locus-tag class description CO538_000005 PF01208 Uroporphyrinogen decarboxylase (URO-D) CO538_000015 PF00893 Small Multidrug Resistance protein CO538_000030 PF00464 Serine hydroxymethyltransferase CO538_000035 PF00162 Phosphoglycerate kinase CO538_000050 PF00834 Ribulose-phosphate 3 epimerase family CO538_000060 PF00312 Ribosomal protein S15 CO538_000065 PF16198 tRNA pseudouridylate synthase B C-terminal domain CO538_000065 PF01509 TruB family pseudouridylate synthase (N terminal domain) CO538_000070 PF13333 Integrase core domain CO538_000070 PF00665 Integrase core domain CO538_000070 PF13276 HTH-like domain CO538_000075 PF01527 Transposase CO538_000085 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_000090 PF01872 RibD C-terminal domain CO538_000090 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CO538_000095 PF01966 HD domain CO538_000095 PF13286 Phosphohydrolase-associated domain CO538_000100 PF01521 Iron-sulphur cluster biosynthesis CO538_000105 PF00005 ABC transporter CO538_000115 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CO538_000120 PF00266 Aminotransferase class-V CO538_000125 PF01027 Inhibitor of apoptosis-promoting Bax1 CO538_000130 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CO538_000145 PF00107 Zinc-binding dehydrogenase CO538_000145 PF08240 Alcohol dehydrogenase GroES-like domain CO538_000150 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_000175 PF02401 LytB protein CO538_000200 PF00436 Single-strand binding protein family CO538_000205 PF00701 Dihydrodipicolinate synthetase family CO538_000220 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_000230 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CO538_000230 PF01926 50S ribosome-binding GTPase CO538_000240 PF01039 Carboxyl transferase domain CO538_000290 PF00579 tRNA synthetases class I (W and Y) CO538_000305 PF00171 Aldehyde dehydrogenase family CO538_000315 PF00293 NUDIX domain CO538_000320 PF01026 TatD related DNase CO538_000325 PF00056 lactate/malate dehydrogenase, NAD binding domain CO538_000325 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CO538_000330 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CO538_000335 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CO538_000340 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CO538_000345 PF01230 HIT domain CO538_000360 PF08245 Mur ligase middle domain CO538_000360 PF02875 Mur ligase family, glutamate ligase domain CO538_000360 PF01225 Mur ligase family, catalytic domain CO538_000365 PF08338 Domain of unknown function (DUF1731) CO538_000365 PF01370 NAD dependent epimerase/dehydratase family CO538_000375 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CO538_000375 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CO538_000380 PF02504 Fatty acid synthesis protein CO538_000385 PF01783 Ribosomal L32p protein family CO538_000390 PF02405 Permease MlaE CO538_000395 PF00005 ABC transporter CO538_000400 PF00448 SRP54-type protein, GTPase domain CO538_000400 PF02881 SRP54-type protein, helical bundle domain CO538_000400 PF02978 Signal peptide binding domain CO538_000415 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO538_000420 PF07977 FabA-like domain CO538_000430 PF07244 Surface antigen variable number repeat CO538_000430 PF01103 Surface antigen CO538_000435 PF02163 Peptidase family M50 CO538_000435 PF17820 PDZ domain CO538_000450 PF00216 Bacterial DNA-binding protein CO538_000455 PF00575 S1 RNA binding domain CO538_000460 PF02390 Putative methyltransferase CO538_000480 PF13276 HTH-like domain CO538_000480 PF00665 Integrase core domain CO538_000480 PF13333 Integrase core domain CO538_000500 PF01678 Diaminopimelate epimerase CO538_000505 PF00549 CoA-ligase CO538_000505 PF02629 CoA binding domain CO538_000510 PF00549 CoA-ligase CO538_000510 PF08442 ATP-grasp domain CO538_000525 PF04452 RNA methyltransferase CO538_000545 PF01218 Coproporphyrinogen III oxidase CO538_000550 PF00072 Response regulator receiver domain CO538_000550 PF13188 PAS domain CO538_000550 PF08448 PAS fold CO538_000550 PF00512 His Kinase A (phospho-acceptor) domain CO538_000550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO538_000555 PF13614 AAA domain CO538_000560 PF17762 HTH domain found in ParB protein CO538_000560 PF02195 ParB-like nuclease domain CO538_000565 PF02542 YgbB family CO538_000565 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CO538_000580 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_000590 PF01782 RimM N-terminal domain CO538_000590 PF05239 PRC-barrel domain CO538_000595 PF09285 Elongation factor P, C-terminal CO538_000595 PF08207 Elongation factor P (EF-P) KOW-like domain CO538_000595 PF01132 Elongation factor P (EF-P) OB domain CO538_000605 PF00155 Aminotransferase class I and II CO538_000615 PF00183 Hsp90 protein CO538_000630 PF02132 RecR protein CO538_000630 PF13662 Toprim domain CO538_000650 PF00270 DEAD/DEAH box helicase CO538_000650 PF00271 Helicase conserved C-terminal domain CO538_000650 PF17764 3′ DNA-binding domain (3′BD) CO538_000650 PF18074 Primosomal protein N C-terminal domain CO538_000650 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CO538_000660 PF12796 Ankyrin repeats (3 copies) CO538_000660 PF13606 Ankyrin repeat CO538_000665 PF02511 Thymidylate synthase complementing protein CO538_000670 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CO538_000675 PF00109 Beta-ketoacyl synthase, N-terminal domain CO538_000675 PF02801 Beta-ketoacyl synthase, C-terminal domain CO538_000680 PF00550 Phosphopantetheine attachment site CO538_000685 PF00348 Polyprenyl synthetase CO538_000695 PF00004 ATPase family associated with various cellular activities (AAA) CO538_000695 PF10431 C-terminal, D2-small domain, of ClpB protein CO538_000695 PF07724 AAA domain (Cdc48 subfamily) CO538_000700 PF00227 Proteasome subunit CO538_000715 PF00762 Ferrochelatase CO538_000725 PF00334 Nucleoside diphosphate kinase CO538_000730 PF00202 Aminotransferase class-III CO538_000735 PF03471 Transporter associated domain CO538_000735 PF00571 CBS domain CO538_000735 PF01595 Cyclin M transmembrane N-terminal domain CO538_000740 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) CO538_000745 PF02441 Flavoprotein CO538_000750 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CO538_000750 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CO538_000765 PF08264 Anticodon-binding domain of tRNA CO538_000765 PF00133 tRNA synthetases class I (I, L, M and V) CO538_000765 PF13603 Leucyl-tRNA synthetase, Domain 2 CO538_000765 PF09334 tRNA synthetases class I (M) CO538_000770 PF01551 Peptidase family M23 CO538_000775 PF13411 MerR HTH family regulatory protein CO538_000780 PF00216 Bacterial DNA-binding protein CO538_000870 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_000885 PF03099 Biotin/lipoate A/B protein ligase family CO538_000890 PF02016 LD-carboxypeptidase N-terminal domain CO538_000890 PF17676 LD-carboxypeptidase C-terminal domain CO538_000900 PF02811 PHP domain CO538_000900 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CO538_000900 PF14579 Helix-hairpin-helix motif CO538_000900 PF07733 Bacterial DNA polymerase III alpha NTPase domain CO538_000905 PF01250 Ribosomal protein S6 CO538_000910 PF01084 Ribosomal protein S18 CO538_000915 PF01281 Ribosomal protein L9, N-terminal domain CO538_000915 PF03948 Ribosomal protein L9, C-terminal domain CO538_000920 PF00206 Lyase CO538_000920 PF10397 Adenylosuccinate lyase C-terminus CO538_000935 PF00665 Integrase core domain CO538_000935 PF13333 Integrase core domain CO538_000935 PF13276 HTH-like domain CO538_000940 PF01527 Transposase CO538_000945 PF13685 Iron-containing alcohol dehydrogenase CO538_000950 PF01546 Peptidase family M20/M25/M40 CO538_000950 PF07687 Peptidase dimerisation domain CO538_000990 PF00186 Dihydrofolate reductase CO538_000995 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CO538_000995 PF00809 Pterin binding enzyme CO538_001000 PF02152 Dihydroneopterin aldolase CO538_001005 PF03070 TENA/THI-4/PQQC family CO538_001055 PF00085 Thioredoxin CO538_001060 PF01612 3'-5' exonuclease CO538_001060 PF00570 HRDC domain CO538_001075 PF07650 KH domain CO538_001075 PF01926 50S ribosome-binding GTPase CO538_001100 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_001115 PF00033 Cytochrome b/b6/petB CO538_001115 PF00032 Cytochrome b(C-terminal)/b6/petD CO538_001120 PF02167 Cytochrome C1 family CO538_001120 PF00032 Cytochrome b(C-terminal)/b6/petD CO538_001120 PF00033 Cytochrome b/b6/petB CO538_001125 PF04851 Type III restriction enzyme, res subunit CO538_001125 PF00271 Helicase conserved C-terminal domain CO538_001125 PF12344 Ultra-violet resistance protein B CO538_001125 PF17757 UvrB interaction domain CO538_001125 PF02151 UvrB/uvrC motif CO538_001145 PF00684 DnaJ central domain CO538_001145 PF00226 DnaJ domain CO538_001145 PF01556 DnaJ C terminal domain CO538_001155 PF03129 Anticodon binding domain CO538_001155 PF13393 Histidyl-tRNA synthetase CO538_001160 PF01975 Survival protein SurE CO538_001170 PF13520 Amino acid permease CO538_001175 PF00324 Amino acid permease CO538_001185 PF02774 Semialdehyde dehydrogenase, dimerisation domain CO538_001185 PF01118 Semialdehyde dehydrogenase, NAD binding domain CO538_001190 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CO538_001190 PF02222 ATP-grasp domain CO538_001195 PF04379 ApaG domain CO538_001200 PF00528 Binding-protein-dependent transport system inner membrane component CO538_001250 PF01921 tRNA synthetases class I (K) CO538_001260 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CO538_001265 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CO538_001270 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CO538_001275 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CO538_001280 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CO538_001315 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_001320 PF17768 RecJ OB domain CO538_001320 PF02272 DHHA1 domain CO538_001320 PF01368 DHH family CO538_001325 PF01938 TRAM domain CO538_001325 PF04055 Radical SAM superfamily CO538_001325 PF00919 Uncharacterized protein family UPF0004 CO538_001330 PF08264 Anticodon-binding domain of tRNA CO538_001330 PF00133 tRNA synthetases class I (I, L, M and V) CO538_001340 PF03483 B3/4 domain CO538_001340 PF03147 Ferredoxin-fold anticodon binding domain CO538_001340 PF01588 Putative tRNA binding domain CO538_001340 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CO538_001340 PF03484 tRNA synthetase B5 domain CO538_001350 PF00119 ATP synthase A chain CO538_001355 PF00137 ATP synthase subunit C CO538_001375 PF02628 Cytochrome oxidase assembly protein CO538_001380 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CO538_001380 PF00289 Biotin carboxylase, N-terminal domain CO538_001380 PF02785 Biotin carboxylase C-terminal domain CO538_001390 PF00749 tRNA synthetases class I (E and Q), catalytic domain CO538_001395 PF00011 Hsp20/alpha crystallin family CO538_001400 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CO538_001410 PF00380 Ribosomal protein S9/S16 CO538_001415 PF00572 Ribosomal protein L13 CO538_001420 PF02321 Outer membrane efflux protein CO538_001425 PF10691 Protein of unknown function (DUF2497) CO538_001430 PF01728 FtsJ-like methyltransferase CO538_001455 PF01702 Queuine tRNA-ribosyltransferase CO538_001465 PF05193 Peptidase M16 inactive domain CO538_001465 PF00675 Insulinase (Peptidase family M16) CO538_001470 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CO538_001470 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CO538_001500 PF03023 Lipid II flippase MurJ CO538_001515 PF01134 Glucose inhibited division protein A CO538_001515 PF13932 GidA associated domain CO538_001520 PF01321 Creatinase/Prolidase N-terminal domain CO538_001520 PF00557 Metallopeptidase family M24 CO538_001555 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CO538_001570 PF03060 Nitronate monooxygenase CO538_001580 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CO538_001590 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_001625 PF00486 Transcriptional regulatory protein, C terminal CO538_001625 PF00072 Response regulator receiver domain CO538_001630 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CO538_001630 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CO538_001635 PF04608 Phosphatidylglycerophosphatase A CO538_001650 PF13085 2Fe-2S iron-sulfur cluster binding domain CO538_001655 PF02130 Uncharacterized protein family UPF0054 CO538_001665 PF12327 FtsZ family, C-terminal domain CO538_001665 PF00091 Tubulin/FtsZ family, GTPase domain CO538_001690 PF01522 Polysaccharide deacetylase CO538_001695 PF00905 Penicillin binding protein transpeptidase domain CO538_001695 PF03717 Penicillin-binding Protein dimerisation domain CO538_001700 PF05362 Lon protease (S16) C-terminal proteolytic domain CO538_001700 PF00004 ATPase family associated with various cellular activities (AAA) CO538_001700 PF02190 ATP-dependent protease La (LON) substrate-binding domain CO538_001705 PF07724 AAA domain (Cdc48 subfamily) CO538_001705 PF06689 ClpX C4-type zinc finger CO538_001705 PF10431 C-terminal, D2-small domain, of ClpB protein CO538_001710 PF00574 Clp protease CO538_001715 PF05697 Bacterial trigger factor protein (TF) CO538_001715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CO538_001715 PF05698 Bacterial trigger factor protein (TF) C-terminus CO538_001725 PF04972 BON domain CO538_001740 PF17827 PrmC N-terminal domain CO538_001740 PF05175 Methyltransferase small domain CO538_001740 PF02390 Putative methyltransferase CO538_001745 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_001755 PF00164 Ribosomal protein S12/S23 CO538_001760 PF00177 Ribosomal protein S7p/S5e CO538_001765 PF00679 Elongation factor G C-terminus CO538_001765 PF03764 Elongation factor G, domain IV CO538_001765 PF00009 Elongation factor Tu GTP binding domain CO538_001765 PF14492 Elongation Factor G, domain II CO538_001765 PF03144 Elongation factor Tu domain 2 CO538_001770 PF00009 Elongation factor Tu GTP binding domain CO538_001770 PF03144 Elongation factor Tu domain 2 CO538_001770 PF03143 Elongation factor Tu C-terminal domain CO538_001785 PF02357 Transcription termination factor nusG CO538_001785 PF00467 KOW motif CO538_001790 PF03946 Ribosomal protein L11, N-terminal domain CO538_001790 PF00298 Ribosomal protein L11, RNA binding domain CO538_001795 PF00687 Ribosomal protein L1p/L10e family CO538_001800 PF00466 Ribosomal protein L10 CO538_001810 PF04983 RNA polymerase Rpb1, domain 3 CO538_001810 PF05000 RNA polymerase Rpb1, domain 4 CO538_001810 PF04998 RNA polymerase Rpb1, domain 5 CO538_001810 PF04563 RNA polymerase beta subunit CO538_001810 PF10385 RNA polymerase beta subunit external 1 domain CO538_001810 PF04565 RNA polymerase Rpb2, domain 3 CO538_001810 PF00623 RNA polymerase Rpb1, domain 2 CO538_001810 PF00562 RNA polymerase Rpb2, domain 6 CO538_001810 PF04560 RNA polymerase Rpb2, domain 7 CO538_001810 PF04561 RNA polymerase Rpb2, domain 2 CO538_001810 PF04997 RNA polymerase Rpb1, domain 1 CO538_001815 PF01207 Dihydrouridine synthase (Dus) CO538_001825 PF02403 Seryl-tRNA synthetase N-terminal domain CO538_001825 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CO538_001830 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CO538_001830 PF02843 Phosphoribosylglycinamide synthetase, C domain CO538_001830 PF02844 Phosphoribosylglycinamide synthetase, N domain CO538_001840 PF00180 Isocitrate/isopropylmalate dehydrogenase CO538_001840 PF18324 Hypothetical protein TT1725 CO538_001850 PF01527 Transposase CO538_001885 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_001935 PF00132 Bacterial transferase hexapeptide (six repeats) CO538_001935 PF14602 Hexapeptide repeat of succinyl-transferase CO538_001935 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CO538_001945 PF02910 Fumarate reductase flavoprotein C-term CO538_001945 PF00890 FAD binding domain CO538_001955 PF00625 Guanylate kinase CO538_001970 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CO538_001970 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CO538_001975 PF13416 Bacterial extracellular solute-binding protein CO538_001995 PF01513 ATP-NAD kinase CO538_002000 PF01197 Ribosomal protein L31 CO538_002005 PF00698 Acyl transferase domain CO538_002015 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CO538_002015 PF01676 Metalloenzyme superfamily CO538_002030 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CO538_002030 PF01411 tRNA synthetases class II (A) CO538_002030 PF02272 DHHA1 domain CO538_002050 PF01632 Ribosomal protein L35 CO538_002055 PF00453 Ribosomal protein L20 CO538_002060 PF00551 Formyl transferase CO538_002060 PF02911 Formyl transferase, C-terminal domain CO538_002070 PF01808 AICARFT/IMPCHase bienzyme CO538_002070 PF02142 MGS-like domain CO538_002090 PF00730 HhH-GPD superfamily base excision DNA repair protein CO538_002090 PF00633 Helix-hairpin-helix motif CO538_002090 PF10576 Iron-sulfur binding domain of endonuclease III CO538_002105 PF08245 Mur ligase middle domain CO538_002120 PF02875 Mur ligase family, glutamate ligase domain CO538_002120 PF08245 Mur ligase middle domain CO538_002135 PF03364 Polyketide cyclase / dehydrase and lipid transport CO538_002140 PF13462 Thioredoxin CO538_002170 PF12169 DNA polymerase III subunits gamma and tau domain III CO538_002175 PF02575 YbaB/EbfC DNA-binding family CO538_002180 PF13505 Outer membrane protein beta-barrel domain CO538_002185 PF04545 Sigma-70, region 4 CO538_002185 PF04542 Sigma-70 region 2 CO538_002185 PF00140 Sigma-70 factor, region 1.2 CO538_002195 PF02768 DNA polymerase III beta subunit, C-terminal domain CO538_002195 PF02767 DNA polymerase III beta subunit, central domain CO538_002195 PF00712 DNA polymerase III beta subunit, N-terminal domain CO538_002200 PF01416 tRNA pseudouridine synthase CO538_002205 PF00154 recA bacterial DNA recombination protein CO538_002215 PF01195 Peptidyl-tRNA hydrolase CO538_002220 PF14693 Ribosomal protein TL5, C-terminal domain CO538_002220 PF01386 Ribosomal L25p family CO538_002240 PF01795 MraW methylase family CO538_002245 PF00083 Sugar (and other) transporter CO538_002245 PF07690 Major Facilitator Superfamily CO538_002250 PF00557 Metallopeptidase family M24 CO538_002255 PF02491 SHS2 domain inserted in FTSA CO538_002260 PF01327 Polypeptide deformylase CO538_002265 PF03167 Uracil DNA glycosylase superfamily CO538_002280 PF00156 Phosphoribosyl transferase domain CO538_002280 PF13537 Glutamine amidotransferase domain CO538_002295 PF03631 Virulence factor BrkB CO538_002305 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CO538_002305 PF02142 MGS-like domain CO538_002305 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CO538_002315 PF00849 RNA pseudouridylate synthase CO538_002325 PF00753 Metallo-beta-lactamase superfamily CO538_002325 PF03772 Competence protein CO538_002345 PF02223 Thymidylate kinase CO538_002355 PF02254 TrkA-N domain CO538_002355 PF00999 Sodium/hydrogen exchanger family CO538_002360 PF00696 Amino acid kinase family CO538_002360 PF01842 ACT domain CO538_002360 PF13840 ACT domain CO538_002365 PF02463 RecF/RecN/SMC N terminal domain CO538_002370 PF00578 AhpC/TSA family CO538_002375 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CO538_002375 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CO538_002380 PF04101 Glycosyltransferase family 28 C-terminal domain CO538_002380 PF03033 Glycosyltransferase family 28 N-terminal domain CO538_002390 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CO538_002390 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO538_002410 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_002435 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO538_002440 PF09312 SurA N-terminal domain CO538_002450 PF00719 Inorganic pyrophosphatase CO538_002475 PF00691 OmpA family CO538_002480 PF01171 PP-loop family CO538_002485 PF17862 AAA+ lid domain CO538_002485 PF06480 FtsH Extracellular CO538_002485 PF01434 Peptidase family M41 CO538_002485 PF00004 ATPase family associated with various cellular activities (AAA) CO538_002490 PF00004 ATPase family associated with various cellular activities (AAA) CO538_002490 PF01434 Peptidase family M41 CO538_002490 PF17862 AAA+ lid domain CO538_002490 PF06480 FtsH Extracellular CO538_002500 PF00004 ATPase family associated with various cellular activities (AAA) CO538_002500 PF17862 AAA+ lid domain CO538_002500 PF06480 FtsH Extracellular CO538_002500 PF01434 Peptidase family M41 CO538_002525 PF02817 e3 binding domain CO538_002525 PF00364 Biotin-requiring enzyme CO538_002525 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CO538_002555 PF00005 ABC transporter CO538_002555 PF00664 ABC transporter transmembrane region CO538_002565 PF00814 Glycoprotease family CO538_002575 PF00989 PAS fold CO538_002575 PF13188 PAS domain CO538_002575 PF13426 PAS domain CO538_002575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO538_002575 PF00512 His Kinase A (phospho-acceptor) domain CO538_002580 PF00202 Aminotransferase class-III CO538_002595 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_002610 PF01594 AI-2E family transporter CO538_002620 PF00589 Phage integrase family CO538_002620 PF02899 Phage integrase, N-terminal SAM-like domain CO538_002630 PF01649 Ribosomal protein S20 CO538_002635 PF00285 Citrate synthase, C-terminal domain CO538_002665 PF17864 RuvB AAA lid domain CO538_002665 PF05491 RuvB C-terminal winged helix domain CO538_002665 PF05496 Holliday junction DNA helicase RuvB P-loop domain CO538_002670 PF01330 RuvA N terminal domain CO538_002670 PF07499 RuvA, C-terminal domain CO538_002675 PF00034 Cytochrome c CO538_002685 PF00580 UvrD/REP helicase N-terminal domain CO538_002685 PF13361 UvrD-like helicase C-terminal domain CO538_002695 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CO538_002700 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CO538_002705 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CO538_002705 PF00361 Proton-conducting membrane transporter CO538_002710 PF00361 Proton-conducting membrane transporter CO538_002715 PF00361 Proton-conducting membrane transporter CO538_002720 PF02237 Biotin protein ligase C terminal domain CO538_002720 PF03099 Biotin/lipoate A/B protein ligase family CO538_002725 PF03100 CcmE CO538_002800 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_002830 PF00004 ATPase family associated with various cellular activities (AAA) CO538_002830 PF17871 AAA lid domain CO538_002830 PF10431 C-terminal, D2-small domain, of ClpB protein CO538_002830 PF02861 Clp amino terminal domain, pathogenicity island component CO538_002830 PF07724 AAA domain (Cdc48 subfamily) CO538_002835 PF05088 Bacterial NAD-glutamate dehydrogenase CO538_002845 PF00072 Response regulator receiver domain CO538_002845 PF00990 Diguanylate cyclase, GGDEF domain CO538_002850 PF11967 Recombination protein O N terminal CO538_002850 PF02565 Recombination protein O C terminal CO538_002895 PF00772 DnaB-like helicase N terminal domain CO538_002895 PF03796 DnaB-like helicase C terminal domain CO538_002920 PF01040 UbiA prenyltransferase family CO538_002925 PF02033 Ribosome-binding factor A CO538_002930 PF11987 Translation-initiation factor 2 CO538_002930 PF00009 Elongation factor Tu GTP binding domain CO538_002930 PF04760 Translation initiation factor IF-2, N-terminal region CO538_002935 PF13184 NusA-like KH domain CO538_002935 PF00575 S1 RNA binding domain CO538_002935 PF08529 NusA N-terminal domain CO538_002960 PF00120 Glutamine synthetase, catalytic domain CO538_002965 PF11638 DnaA N-terminal domain CO538_002965 PF00308 Bacterial dnaA protein CO538_002965 PF08299 Bacterial dnaA protein helix-turn-helix CO538_002970 PF07549 SecD/SecF GG Motif CO538_002970 PF02355 Protein export membrane protein CO538_002985 PF02096 60Kd inner membrane protein CO538_002985 PF14849 YidC periplasmic domain CO538_002990 PF00885 6,7-dimethyl-8-ribityllumazine synthase CO538_002995 PF01029 NusB family CO538_003005 PF00692 dUTPase CO538_003015 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_003025 PF00578 AhpC/TSA family CO538_003025 PF10417 C-terminal domain of 1-Cys peroxiredoxin CO538_003030 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO538_003040 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_003080 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_003105 PF03109 ABC1 family CO538_003110 PF00005 ABC transporter CO538_003115 PF01297 Zinc-uptake complex component A periplasmic CO538_003130 PF00471 Ribosomal protein L33 CO538_003135 PF00575 S1 RNA binding domain CO538_003135 PF10150 Ribonuclease E/G family CO538_003135 PF12111 Polyribonucleotide phosphorylase C terminal CO538_003140 PF00012 Hsp70 protein CO538_003145 PF01722 BolA-like protein CO538_003150 PF01053 Cys/Met metabolism PLP-dependent enzyme CO538_003155 PF08245 Mur ligase middle domain CO538_003155 PF02875 Mur ligase family, glutamate ligase domain CO538_003170 PF01300 Telomere recombination CO538_003175 PF12169 DNA polymerase III subunits gamma and tau domain III CO538_003190 PF13244 Domain of unknown function (DUF4040) CO538_003190 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CO538_003190 PF00361 Proton-conducting membrane transporter CO538_003195 PF00772 DnaB-like helicase N terminal domain CO538_003195 PF03796 DnaB-like helicase C terminal domain CO538_003205 PF06271 RDD family CO538_003225 PF01979 Amidohydrolase family CO538_003230 PF00570 HRDC domain CO538_003230 PF01612 3'-5' exonuclease CO538_003235 PF01121 Dephospho-CoA kinase CO538_003245 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_003250 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_003265 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_003285 PF12796 Ankyrin repeats (3 copies) CO538_003290 PF00268 Ribonucleotide reductase, small chain CO538_003305 PF09334 tRNA synthetases class I (M) CO538_003305 PF08264 Anticodon-binding domain of tRNA CO538_003310 PF01527 Transposase CO538_003315 PF13333 Integrase core domain CO538_003315 PF00665 Integrase core domain CO538_003315 PF13276 HTH-like domain CO538_003325 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_003355 PF00902 Sec-independent protein translocase protein (TatC) CO538_003360 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CO538_003360 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CO538_003380 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_003400 PF13735 tRNA nucleotidyltransferase domain 2 putative CO538_003400 PF12627 Probable RNA and SrmB- binding site of polymerase A CO538_003400 PF01743 Poly A polymerase head domain CO538_003410 PF00749 tRNA synthetases class I (E and Q), catalytic domain CO538_003425 PF00950 ABC 3 transport family CO538_003435 PF00288 GHMP kinases N terminal domain CO538_003435 PF08544 GHMP kinases C terminal CO538_003440 PF12705 PD-(D/E)XK nuclease superfamily CO538_003440 PF00580 UvrD/REP helicase N-terminal domain CO538_003440 PF13361 UvrD-like helicase C-terminal domain CO538_003480 PF00111 2Fe-2S iron-sulfur cluster binding domain CO538_003495 PF01807 CHC2 zinc finger CO538_003495 PF08275 DNA primase catalytic core, N-terminal domain CO538_003495 PF13662 Toprim domain CO538_003500 PF08241 Methyltransferase domain CO538_003510 PF00814 Glycoprotease family CO538_003535 PF01258 Prokaryotic dksA/traR C4-type zinc finger CO538_003540 PF00684 DnaJ central domain CO538_003540 PF00226 DnaJ domain CO538_003540 PF01556 DnaJ C terminal domain CO538_003550 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_003565 PF02875 Mur ligase family, glutamate ligase domain CO538_003565 PF01225 Mur ligase family, catalytic domain CO538_003565 PF08245 Mur ligase middle domain CO538_003570 PF03330 Lytic transglycolase CO538_003580 PF01494 FAD binding domain CO538_003595 PF01467 Cytidylyltransferase-like CO538_003610 PF01255 Putative undecaprenyl diphosphate synthase CO538_003620 PF02817 e3 binding domain CO538_003620 PF00364 Biotin-requiring enzyme CO538_003620 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CO538_003625 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_003660 PF01926 50S ribosome-binding GTPase CO538_003660 PF06071 Protein of unknown function (DUF933) CO538_003670 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CO538_003685 PF00005 ABC transporter CO538_003690 PF02416 mttA/Hcf106 family CO538_003700 PF06055 Exopolysaccharide synthesis, ExoD CO538_003705 PF01406 tRNA synthetases class I (C) catalytic domain CO538_003705 PF09190 DALR domain CO538_003720 PF00075 RNase H CO538_003725 PF01040 UbiA prenyltransferase family CO538_003730 PF00115 Cytochrome C and Quinol oxidase polypeptide I CO538_003735 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CO538_003735 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CO538_003740 PF00529 HlyD membrane-fusion protein of T1SS CO538_003740 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CO538_003750 PF00676 Dehydrogenase E1 component CO538_003755 PF02637 GatB domain CO538_003755 PF02934 GatB/GatE catalytic domain CO538_003770 PF00589 Phage integrase family CO538_003770 PF02899 Phage integrase, N-terminal SAM-like domain CO538_003775 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CO538_003775 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO538_003785 PF00115 Cytochrome C and Quinol oxidase polypeptide I CO538_003795 PF00133 tRNA synthetases class I (I, L, M and V) CO538_003795 PF08264 Anticodon-binding domain of tRNA CO538_003810 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CO538_003835 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_003855 PF05173 Dihydrodipicolinate reductase, C-terminus CO538_003855 PF01113 Dihydrodipicolinate reductase, N-terminus CO538_003860 PF00005 ABC transporter CO538_003880 PF13288 DXP reductoisomerase C-terminal domain CO538_003880 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CO538_003880 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CO538_003895 PF01527 Transposase CO538_003905 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_003915 PF13333 Integrase core domain CO538_003915 PF13276 HTH-like domain CO538_003915 PF00665 Integrase core domain CO538_003925 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CO538_003925 PF03129 Anticodon binding domain CO538_003930 PF01648 4'-phosphopantetheinyl transferase superfamily CO538_003955 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_003995 PF01235 Sodium:alanine symporter family CO538_004010 PF02545 Maf-like protein CO538_004015 PF01176 Translation initiation factor 1A / IF-1 CO538_004025 PF00709 Adenylosuccinate synthetase CO538_004040 PF00696 Amino acid kinase family CO538_004045 PF01926 50S ribosome-binding GTPase CO538_004050 PF03462 PCRF domain CO538_004050 PF00472 RF-1 domain CO538_004085 PF07690 Major Facilitator Superfamily CO538_004100 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_004110 PF04551 GcpE protein CO538_004115 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_004140 PF09397 Ftsk gamma domain CO538_004140 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CO538_004140 PF17854 FtsK alpha domain CO538_004140 PF01580 FtsK/SpoIIIE family CO538_004145 PF02325 YGGT family CO538_004150 PF01527 Transposase CO538_004155 PF13333 Integrase core domain CO538_004155 PF13276 HTH-like domain CO538_004155 PF00665 Integrase core domain CO538_004170 PF13276 HTH-like domain CO538_004170 PF00665 Integrase core domain CO538_004170 PF13333 Integrase core domain CO538_004175 PF01527 Transposase CO538_004180 PF01018 GTP1/OBG CO538_004180 PF01926 50S ribosome-binding GTPase CO538_004185 PF00113 Enolase, C-terminal TIM barrel domain CO538_004185 PF03952 Enolase, N-terminal domain CO538_004195 PF02875 Mur ligase family, glutamate ligase domain CO538_004195 PF08245 Mur ligase middle domain CO538_004195 PF01225 Mur ligase family, catalytic domain CO538_004200 PF02104 SURF1 family CO538_004205 PF00210 Ferritin-like domain CO538_004240 PF00206 Lyase CO538_004240 PF10415 Fumarase C C-terminus CO538_004255 PF00586 AIR synthase related protein, N-terminal domain CO538_004255 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CO538_004255 PF02769 AIR synthase related protein, C-terminal domain CO538_004275 PF00226 DnaJ domain CO538_004275 PF00684 DnaJ central domain CO538_004275 PF01556 DnaJ C terminal domain CO538_004280 PF17770 Ribonuclease J C-terminal domain CO538_004280 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CO538_004280 PF12706 Beta-lactamase superfamily domain CO538_004290 PF07676 WD40-like Beta Propeller Repeat CO538_004295 PF02686 Glu-tRNAGln amidotransferase C subunit CO538_004300 PF14572 Phosphoribosyl synthetase-associated domain CO538_004300 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CO538_004305 PF02779 Transketolase, pyrimidine binding domain CO538_004305 PF00456 Transketolase, thiamine diphosphate binding domain CO538_004305 PF02780 Transketolase, C-terminal domain CO538_004310 PF01479 S4 domain CO538_004310 PF00163 Ribosomal protein S4/S9 N-terminal domain CO538_004320 PF04384 Iron-sulphur cluster assembly CO538_004330 PF00830 Ribosomal L28 family CO538_004335 PF04055 Radical SAM superfamily CO538_004335 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CO538_004345 PF00929 Exonuclease CO538_004370 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_004395 PF00004 ATPase family associated with various cellular activities (AAA) CO538_004395 PF17862 AAA+ lid domain CO538_004395 PF06480 FtsH Extracellular CO538_004395 PF01434 Peptidase family M41 CO538_004415 PF17755 UvrA DNA-binding domain CO538_004415 PF17760 UvrA interaction domain CO538_004425 PF00364 Biotin-requiring enzyme CO538_004425 PF02779 Transketolase, pyrimidine binding domain CO538_004425 PF02780 Transketolase, C-terminal domain CO538_004435 PF10502 Signal peptidase, peptidase S26 CO538_004440 PF00012 Hsp70 protein CO538_004445 PF00226 DnaJ domain CO538_004445 PF07743 HSCB C-terminal oligomerisation domain CO538_004450 PF01521 Iron-sulphur cluster biosynthesis CO538_004455 PF01592 NifU-like N terminal domain CO538_004460 PF00448 SRP54-type protein, GTPase domain CO538_004460 PF02881 SRP54-type protein, helical bundle domain CO538_004485 PF01571 Aminomethyltransferase folate-binding domain CO538_004490 PF00166 Chaperonin 10 Kd subunit CO538_004495 PF00118 TCP-1/cpn60 chaperonin family CO538_004510 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_004520 PF18073 Rubredoxin metal binding domain CO538_004525 PF00083 Sugar (and other) transporter CO538_004525 PF07690 Major Facilitator Superfamily CO538_004535 PF01751 Toprim domain CO538_004535 PF01396 Topoisomerase DNA binding C4 zinc finger CO538_004535 PF13368 Topoisomerase C-terminal repeat CO538_004535 PF01131 DNA topoisomerase CO538_004555 PF02534 Type IV secretory system Conjugative DNA transfer CO538_004560 PF00437 Type II/IV secretion system protein CO538_004575 PF04335 VirB8 protein CO538_004580 PF00925 GTP cyclohydrolase II CO538_004600 PF00692 dUTPase CO538_004605 PF02386 Cation transport protein CO538_004620 PF01765 Ribosome recycling factor CO538_004625 PF00696 Amino acid kinase family CO538_004630 PF00889 Elongation factor TS CO538_004635 PF00318 Ribosomal protein S2 CO538_004645 PF02699 Preprotein translocase subunit CO538_004650 PF01380 SIS domain CO538_004680 PF06418 CTP synthase N-terminus CO538_004680 PF00117 Glutamine amidotransferase class-I CO538_004690 PF14437 MafB19-like deaminase CO538_004700 PF00005 ABC transporter CO538_004705 PF05746 DALR anticodon binding domain CO538_004705 PF03485 Arginyl tRNA synthetase N terminal domain CO538_004705 PF00750 tRNA synthetases class I (R) CO538_004720 PF00664 ABC transporter transmembrane region CO538_004720 PF00005 ABC transporter CO538_004725 PF01209 ubiE/COQ5 methyltransferase family CO538_004730 PF07690 Major Facilitator Superfamily CO538_004765 PF00462 Glutaredoxin CO538_004775 PF00390 Malic enzyme, N-terminal domain CO538_004775 PF03949 Malic enzyme, NAD binding domain CO538_004775 PF01515 Phosphate acetyl/butaryl transferase CO538_004780 PF01066 CDP-alcohol phosphatidyltransferase CO538_004795 PF01709 Transcriptional regulator CO538_004800 PF08525 Opacity-associated protein A N-terminal motif CO538_004800 PF01476 LysM domain CO538_004800 PF01551 Peptidase family M23 CO538_004835 PF02896 PEP-utilising enzyme, TIM barrel domain CO538_004835 PF00391 PEP-utilising enzyme, mobile domain CO538_004835 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CO538_004840 PF04002 RadC-like JAB domain CO538_004955 PF01272 Transcription elongation factor, GreA/GreB, C-term CO538_004955 PF03449 Transcription elongation factor, N-terminal CO538_004960 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CO538_004960 PF00306 ATP synthase alpha/beta chain, C terminal domain CO538_004960 PF02874 ATP synthase alpha/beta family, beta-barrel domain CO538_004965 PF00213 ATP synthase delta (OSCP) subunit CO538_004970 PF02021 Uncharacterised protein family UPF0102 CO538_004975 PF01196 Ribosomal protein L17 CO538_004980 PF01000 RNA polymerase Rpb3/RpoA insert domain CO538_004980 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CO538_004980 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CO538_004985 PF00411 Ribosomal protein S11 CO538_004990 PF00416 Ribosomal protein S13/S18 CO538_005000 PF00344 SecY translocase CO538_005005 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CO538_005010 PF03719 Ribosomal protein S5, C-terminal domain CO538_005010 PF00333 Ribosomal protein S5, N-terminal domain CO538_005015 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CO538_005020 PF00347 Ribosomal protein L6 CO538_005025 PF00410 Ribosomal protein S8 CO538_005030 PF00253 Ribosomal protein S14p/S29e CO538_005035 PF00673 ribosomal L5P family C-terminus CO538_005035 PF00281 Ribosomal protein L5 CO538_005040 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CO538_005045 PF00238 Ribosomal protein L14p/L23e CO538_005050 PF00366 Ribosomal protein S17 CO538_005055 PF00831 Ribosomal L29 protein CO538_005060 PF00252 Ribosomal protein L16p/L10e CO538_005065 PF07650 KH domain CO538_005065 PF00189 Ribosomal protein S3, C-terminal domain CO538_005070 PF00237 Ribosomal protein L22p/L17e CO538_005075 PF00203 Ribosomal protein S19 CO538_005080 PF03947 Ribosomal Proteins L2, C-terminal domain CO538_005080 PF00181 Ribosomal Proteins L2, RNA binding domain CO538_005085 PF00276 Ribosomal protein L23 CO538_005090 PF00573 Ribosomal protein L4/L1 family CO538_005095 PF00297 Ribosomal protein L3 CO538_005100 PF00338 Ribosomal protein S10p/S20e CO538_005105 PF03144 Elongation factor Tu domain 2 CO538_005105 PF03143 Elongation factor Tu C-terminal domain CO538_005105 PF00009 Elongation factor Tu GTP binding domain CO538_005120 PF00117 Glutamine amidotransferase class-I CO538_005120 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CO538_005130 PF00923 Transaldolase/Fructose-6-phosphate aldolase CO538_005145 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_005160 PF00829 Ribosomal prokaryotic L21 protein CO538_005165 PF01016 Ribosomal L27 protein CO538_005175 PF02772 S-adenosylmethionine synthetase, central domain CO538_005175 PF02773 S-adenosylmethionine synthetase, C-terminal domain CO538_005175 PF00438 S-adenosylmethionine synthetase, N-terminal domain CO538_005180 PF03070 TENA/THI-4/PQQC family CO538_005190 PF00510 Cytochrome c oxidase subunit III CO538_005195 PF02075 Crossover junction endodeoxyribonuclease RuvC CO538_005200 PF03652 Holliday junction resolvase CO538_005205 PF02867 Ribonucleotide reductase, barrel domain CO538_005205 PF00317 Ribonucleotide reductase, all-alpha domain CO538_005205 PF03477 ATP cone domain CO538_005230 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_005250 PF00468 Ribosomal protein L34 CO538_005255 PF00528 Binding-protein-dependent transport system inner membrane component CO538_005260 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CO538_005260 PF02874 ATP synthase alpha/beta family, beta-barrel domain CO538_005265 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CO538_005280 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_005300 PF12804 MobA-like NTP transferase domain CO538_005300 PF14602 Hexapeptide repeat of succinyl-transferase CO538_005300 PF00132 Bacterial transferase hexapeptide (six repeats) CO538_005305 PF01409 tRNA synthetases class II core domain (F) CO538_005305 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CO538_005315 PF00677 Lumazine binding domain CO538_005325 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CO538_005325 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CO538_005325 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CO538_005325 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CO538_005360 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_005370 PF00476 DNA polymerase family A CO538_005370 PF01367 5'-3' exonuclease, C-terminal SAM fold CO538_005370 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CO538_005375 PF01425 Amidase CO538_005380 PF00204 DNA gyrase B CO538_005380 PF01751 Toprim domain CO538_005380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO538_005380 PF00986 DNA gyrase B subunit, carboxyl terminus CO538_005400 PF02666 Phosphatidylserine decarboxylase CO538_005405 PF01066 CDP-alcohol phosphatidyltransferase CO538_005410 PF01235 Sodium:alanine symporter family CO538_005415 PF01235 Sodium:alanine symporter family CO538_005420 PF02660 Glycerol-3-phosphate acyltransferase CO538_005430 PF01545 Cation efflux family CO538_005455 PF08032 RNA 2'-O ribose methyltransferase substrate binding CO538_005455 PF00588 SpoU rRNA Methylase family CO538_005465 PF01541 GIY-YIG catalytic domain CO538_005465 PF02151 UvrB/uvrC motif CO538_005465 PF08459 UvrC Helix-hairpin-helix N-terminal CO538_005470 PF05746 DALR anticodon binding domain CO538_005470 PF02092 Glycyl-tRNA synthetase beta subunit CO538_005475 PF02091 Glycyl-tRNA synthetase alpha subunit CO538_005490 PF01527 Transposase CO538_005495 PF13333 Integrase core domain CO538_005495 PF00665 Integrase core domain CO538_005495 PF13276 HTH-like domain CO538_005500 PF00490 Delta-aminolevulinic acid dehydratase CO538_005505 PF00146 NADH dehydrogenase CO538_005510 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CO538_005510 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CO538_005510 PF00384 Molybdopterin oxidoreductase CO538_005520 PF00883 Cytosol aminopeptidase family, catalytic domain CO538_005520 PF02789 Cytosol aminopeptidase family, N-terminal domain CO538_005530 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CO538_005530 PF14850 DNA-binding domain of Proline dehydrogenase CO538_005530 PF01619 Proline dehydrogenase CO538_005530 PF00171 Aldehyde dehydrogenase family CO538_005535 PF00330 Aconitase family (aconitate hydratase) CO538_005535 PF00694 Aconitase C-terminal domain CO538_005540 PF02556 Preprotein translocase subunit SecB CO538_005550 PF00929 Exonuclease CO538_005555 PF02630 SCO1/SenC CO538_005565 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_005580 PF00035 Double-stranded RNA binding motif CO538_005580 PF14622 Ribonuclease-III-like CO538_005585 PF01180 Dihydroorotate dehydrogenase CO538_005600 PF01791 DeoC/LacD family aldolase CO538_005610 PF10431 C-terminal, D2-small domain, of ClpB protein CO538_005610 PF02861 Clp amino terminal domain, pathogenicity island component CO538_005610 PF00004 ATPase family associated with various cellular activities (AAA) CO538_005610 PF07724 AAA domain (Cdc48 subfamily) CO538_005610 PF17871 AAA lid domain CO538_005615 PF00271 Helicase conserved C-terminal domain CO538_005615 PF00270 DEAD/DEAH box helicase CO538_005620 PF00313 'Cold-shock' DNA-binding domain CO538_005625 PF01523 Putative modulator of DNA gyrase CO538_005630 PF00231 ATP synthase CO538_005645 PF12704 MacB-like periplasmic core domain CO538_005645 PF02687 FtsX-like permease family CO538_005670 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CO538_005675 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CO538_005700 PF04545 Sigma-70, region 4 CO538_005700 PF00140 Sigma-70 factor, region 1.2 CO538_005700 PF04546 Sigma-70, non-essential region CO538_005700 PF04539 Sigma-70 region 3 CO538_005700 PF03979 Sigma-70 factor, region 1.1 CO538_005700 PF04542 Sigma-70 region 2 CO538_005705 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CO538_005715 PF00361 Proton-conducting membrane transporter CO538_005715 PF13244 Domain of unknown function (DUF4040) CO538_005715 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CO538_005730 PF01192 RNA polymerase Rpb6 CO538_005740 PF00731 AIR carboxylase CO538_005745 PF01119 DNA mismatch repair protein, C-terminal domain CO538_005745 PF08676 MutL C terminal dimerisation domain CO538_005755 PF01145 SPFH domain / Band 7 family CO538_005760 PF01145 SPFH domain / Band 7 family CO538_005765 PF13180 PDZ domain CO538_005885 PF00121 Triosephosphate isomerase CO538_005895 PF00398 Ribosomal RNA adenine dimethylase CO538_005900 PF00571 CBS domain CO538_005900 PF00478 IMP dehydrogenase / GMP reductase domain CO538_005905 PF07497 Rho termination factor, RNA-binding domain CO538_005905 PF07498 Rho termination factor, N-terminal domain CO538_005905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CO538_005920 PF00886 Ribosomal protein S16 CO538_005925 PF00348 Polyprenyl synthetase CO538_005930 PF01025 GrpE CO538_005935 PF00579 tRNA synthetases class I (W and Y) CO538_005955 PF01527 Transposase CO538_005960 PF13333 Integrase core domain CO538_005960 PF00665 Integrase core domain CO538_005960 PF13276 HTH-like domain CO538_005965 PF16078 2-oxoglutarate dehydrogenase N-terminus CO538_005965 PF00676 Dehydrogenase E1 component CO538_005965 PF16870 2-oxoglutarate dehydrogenase C-terminal CO538_005965 PF02779 Transketolase, pyrimidine binding domain CO538_006005 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CO538_006010 PF13091 PLD-like domain CO538_006040 PF01790 Prolipoprotein diacylglyceryl transferase CO538_006045 PF01668 SmpB protein CO538_006065 PF00551 Formyl transferase CO538_006075 PF05193 Peptidase M16 inactive domain CO538_006075 PF00675 Insulinase (Peptidase family M16) CO538_006080 PF01252 Signal peptidase (SPase) II CO538_006085 PF06574 FAD synthetase CO538_006085 PF01687 Riboflavin kinase CO538_006090 PF00462 Glutaredoxin CO538_006100 PF03144 Elongation factor Tu domain 2 CO538_006100 PF00009 Elongation factor Tu GTP binding domain CO538_006100 PF00679 Elongation factor G C-terminus CO538_006100 PF14492 Elongation Factor G, domain II CO538_006100 PF06421 GTP-binding protein LepA C-terminus CO538_006115 PF03471 Transporter associated domain CO538_006115 PF03741 Integral membrane protein TerC family CO538_006120 PF00117 Glutamine amidotransferase class-I CO538_006120 PF00958 GMP synthase C terminal domain CO538_006120 PF02540 NAD synthase CO538_006125 PF03958 Bacterial type II/III secretion system short domain CO538_006125 PF00263 Bacterial type II and III secretion system protein CO538_006145 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_006155 PF01578 Cytochrome C assembly protein CO538_006160 PF03618 Kinase/pyrophosphorylase CO538_006165 PF00444 Ribosomal protein L36 CO538_006185 PF17191 RecG wedge domain CO538_006185 PF00271 Helicase conserved C-terminal domain CO538_006185 PF00270 DEAD/DEAH box helicase CO538_006215 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_006230 PF00919 Uncharacterized protein family UPF0004 CO538_006230 PF04055 Radical SAM superfamily CO538_006240 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_006265 PF02355 Protein export membrane protein CO538_006275 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CO538_006275 PF03900 Porphobilinogen deaminase, C-terminal domain CO538_006280 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CO538_006280 PF01565 FAD binding domain CO538_006285 PF00375 Sodium:dicarboxylate symporter family CO538_006290 PF00156 Phosphoribosyl transferase domain CO538_006310 PF01653 NAD-dependent DNA ligase adenylation domain CO538_006310 PF12826 Helix-hairpin-helix motif CO538_006310 PF00533 BRCA1 C Terminus (BRCT) domain CO538_006310 PF03120 NAD-dependent DNA ligase OB-fold domain CO538_006345 PF07478 D-ala D-ala ligase C-terminus CO538_006345 PF01820 D-ala D-ala ligase N-terminus CO538_006360 PF00037 4Fe-4S binding domain CO538_006360 PF11953 Domain of unknown function (DUF3470) CO538_006365 PF02481 DNA recombination-mediator protein A CO538_006365 PF17782 DprA winged helix domain CO538_006385 PF02810 SEC-C motif CO538_006385 PF07517 SecA DEAD-like domain CO538_006385 PF07516 SecA Wing and Scaffold domain CO538_006385 PF01043 SecA preprotein cross-linking domain CO538_006405 PF02646 RmuC family CO538_006410 PF07943 Penicillin-binding protein 5, C-terminal domain CO538_006410 PF00768 D-alanyl-D-alanine carboxypeptidase CO538_006415 PF04002 RadC-like JAB domain CO538_006430 PF01578 Cytochrome C assembly protein CO538_006430 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CO538_006440 PF05192 MutS domain III CO538_006440 PF05190 MutS family domain IV CO538_006440 PF00488 MutS domain V CO538_006440 PF05188 MutS domain II CO538_006440 PF01624 MutS domain I CO538_006450 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_006465 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_006475 PF01769 Divalent cation transporter CO538_006475 PF00571 CBS domain CO538_006475 PF03448 MgtE intracellular N domain CO538_006495 PF01479 S4 domain CO538_006495 PF00849 RNA pseudouridylate synthase CO538_006500 PF00083 Sugar (and other) transporter CO538_006500 PF08946 Osmosensory transporter coiled coil CO538_006520 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_006535 PF01336 OB-fold nucleic acid binding domain CO538_006535 PF02938 GAD domain CO538_006535 PF00152 tRNA synthetases class II (D, K and N) CO538_006550 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_006570 PF00083 Sugar (and other) transporter CO538_006570 PF08946 Osmosensory transporter coiled coil CO538_006575 PF01479 S4 domain CO538_006575 PF00849 RNA pseudouridylate synthase CO538_006595 PF01769 Divalent cation transporter CO538_006595 PF00571 CBS domain CO538_006595 PF03448 MgtE intracellular N domain CO538_006605 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_006685 PF04002 RadC-like JAB domain CO538_006710 PF13091 PLD-like domain CO538_006735 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CO538_006735 PF10531 SLBB domain CO538_006735 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CO538_006740 PF00707 Translation initiation factor IF-3, C-terminal domain CO538_006740 PF05198 Translation initiation factor IF-3, N-terminal domain CO538_006745 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CO538_006745 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CO538_006745 PF03129 Anticodon binding domain CO538_006755 PF12838 4Fe-4S dicluster domain CO538_006760 PF12631 MnmE helical domain CO538_006760 PF01926 50S ribosome-binding GTPase CO538_006760 PF10396 GTP-binding protein TrmE N-terminus CO538_006770 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO538_006785 PF00953 Glycosyl transferase family 4 CO538_006790 PF01351 Ribonuclease HII CO538_006810 PF02769 AIR synthase related protein, C-terminal domain CO538_006810 PF00586 AIR synthase related protein, N-terminal domain CO538_006815 PF01259 SAICAR synthetase CO538_006820 PF01746 tRNA (Guanine-1)-methyltransferase CO538_006825 PF01245 Ribosomal protein L19 CO538_006830 PF00528 Binding-protein-dependent transport system inner membrane component CO538_006845 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CO538_006845 PF01243 Pyridoxamine 5'-phosphate oxidase CO538_006850 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CO538_006850 PF06827 Zinc finger found in FPG and IleRS CO538_006850 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CO538_006885 PF10609 NUBPL iron-transfer P-loop NTPase CO538_006900 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_006940 PF01098 Cell cycle protein CO538_006945 PF00266 Aminotransferase class-V CO538_006970 PF08671 Anti-repressor SinI CO538_006970 PF01381 Helix-turn-helix CO538_006975 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_006985 PF04002 RadC-like JAB domain CO538_006990 PF01381 Helix-turn-helix CO538_006995 PF01119 DNA mismatch repair protein, C-terminal domain CO538_006995 PF08676 MutL C terminal dimerisation domain CO538_007005 PF12804 MobA-like NTP transferase domain CO538_007005 PF00132 Bacterial transferase hexapeptide (six repeats) CO538_007005 PF14602 Hexapeptide repeat of succinyl-transferase CO538_007010 PF01370 NAD dependent epimerase/dehydratase family CO538_007030 PF00005 ABC transporter CO538_007030 PF00664 ABC transporter transmembrane region CO538_007035 PF01212 Beta-eliminating lyase CO538_007040 PF01212 Beta-eliminating lyase CO538_007050 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CO538_007050 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CO538_007050 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CO538_007055 PF00892 EamA-like transporter family CO538_007080 PF01523 Putative modulator of DNA gyrase CO538_007085 PF00355 Rieske [2Fe-2S] domain CO538_007085 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CO538_007090 PF03989 DNA gyrase C-terminal domain, beta-propeller CO538_007090 PF00521 DNA gyrase/topoisomerase IV, subunit A CO538_007110 PF02632 BioY family CO538_007115 PF00881 Nitroreductase family CO538_007125 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO538_007140 PF03471 Transporter associated domain CO538_007140 PF00571 CBS domain