locus-tag	class	description
DEJ70_00005	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
DEJ70_00015	COG2076	Multidrug Resistance protein
DEJ70_00030	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
DEJ70_00035	COG0126	phosphoglycerate kinase activity
DEJ70_00050	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
DEJ70_00060	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
DEJ70_00065	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
DEJ70_00070	COG2801	Transposase and inactivated derivatives
DEJ70_00085	COG3344	reverse transcriptase
DEJ70_00090	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DEJ70_00090	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DEJ70_00095	COG0232	Belongs to the dGTPase family. Type 2 subfamily
DEJ70_00100	COG0316	Belongs to the HesB IscA family
DEJ70_00115	COG2945	thiolester hydrolase activity
DEJ70_00120	COG1104	cysteine desulfurase activity
DEJ70_00125	COG0670	Belongs to the BI1 family
DEJ70_00130	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
DEJ70_00150	COG3344	reverse transcriptase
DEJ70_00165	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
DEJ70_00175	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
DEJ70_00200	COG0629	single-stranded DNA binding
DEJ70_00205	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DEJ70_00220	COG3344	reverse transcriptase
DEJ70_00240	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
DEJ70_00275	COG2801	Transposase and inactivated derivatives
DEJ70_00285	COG2801	Transposase and inactivated derivatives
DEJ70_00290	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
DEJ70_00295	COG0799	negative regulation of ribosome biogenesis
DEJ70_00305	COG1012	belongs to the aldehyde dehydrogenase family
DEJ70_00315	COG0494	nUDIX hydrolase
DEJ70_00320	COG0084	hydrolase, TatD family'
DEJ70_00325	COG0039	L-malate dehydrogenase activity
DEJ70_00330	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DEJ70_00335	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DEJ70_00340	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DEJ70_00345	COG0537	adenosine 5'-monophosphoramidase activity
DEJ70_00365	COG1090	epimerase
DEJ70_00375	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
DEJ70_00380	COG0416	fatty acid biosynthetic process
DEJ70_00385	COG0333	Belongs to the bacterial ribosomal protein bL32 family
DEJ70_00390	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
DEJ70_00395	COG1127	ABC transporter
DEJ70_00400	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
DEJ70_00415	COG0543	2 iron, 2 sulfur cluster binding
DEJ70_00415	COG0493	'glutamate synthase
DEJ70_00420	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
DEJ70_00435	COG0750	zinc metalloprotease
DEJ70_00450	COG0776	regulation of translation
DEJ70_00455	COG0539	negative regulation of cytoplasmic translation
DEJ70_00460	COG0220	tRNA (guanine-N7-)-methyltransferase activity
DEJ70_00480	COG2801	Transposase and inactivated derivatives
DEJ70_00505	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
DEJ70_00510	COG0045	succinate-CoA ligase (ADP-forming) activity
DEJ70_00525	COG1385	rRNA (uridine-N3-)-methyltransferase activity
DEJ70_00555	COG1192	Involved in chromosome partitioning
DEJ70_00560	COG1475	DNA binding
DEJ70_00565	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
DEJ70_00565	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
DEJ70_00580	COG3344	reverse transcriptase
DEJ70_00590	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
DEJ70_00595	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
DEJ70_00605	COG0156	8-amino-7-oxononanoate synthase activity
DEJ70_00615	COG0326	Molecular chaperone. Has ATPase activity
DEJ70_00630	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
DEJ70_00660	COG0666	response to abiotic stimulus
DEJ70_00665	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
DEJ70_00670	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
DEJ70_00675	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DEJ70_00680	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DEJ70_00685	COG0142	geranyltranstransferase activity
DEJ70_00695	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
DEJ70_00700	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
DEJ70_00715	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
DEJ70_00725	COG0105	UTP biosynthetic process
DEJ70_00730	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DEJ70_00735	COG4536	flavin adenine dinucleotide binding
DEJ70_00740	COG3750	Belongs to the UPF0335 family
DEJ70_00745	COG0163	prenyltransferase activity
DEJ70_00750	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
DEJ70_00765	COG0495	leucyl-tRNA aminoacylation
DEJ70_00780	COG0776	regulation of translation
DEJ70_00830	COG2801	Transposase and inactivated derivatives
DEJ70_00870	COG3344	reverse transcriptase
DEJ70_00890	COG0321	lipoyl(octanoyl) transferase activity
DEJ70_00895	COG1619	proteins homologs of microcin C7 resistance protein MccF
DEJ70_00905	COG0587	DNA-directed DNA polymerase activity
DEJ70_00910	COG0360	Binds together with S18 to 16S ribosomal RNA
DEJ70_00915	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
DEJ70_00920	COG0359	binds to the 23S rRNA
DEJ70_00925	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
DEJ70_00940	COG2801	Transposase and inactivated derivatives
DEJ70_00955	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DEJ70_01000	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
DEJ70_01000	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
DEJ70_01010	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
DEJ70_01025	COG2801	Transposase and inactivated derivatives
DEJ70_01060	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
DEJ70_01075	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
DEJ70_01105	COG3344	reverse transcriptase
DEJ70_01120	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
DEJ70_01125	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
DEJ70_01125	COG2857	Cytochrome c1
DEJ70_01130	COG0556	nucleotide-excision repair
DEJ70_01135	COG2801	Transposase and inactivated derivatives
DEJ70_01150	COG0484	heat shock protein binding
DEJ70_01160	COG0124	histidyl-tRNA synthetase
DEJ70_01165	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
DEJ70_01175	COG0531	amino acid
DEJ70_01180	COG1113	amino acid transport
DEJ70_01190	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
DEJ70_01195	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
DEJ70_01200	COG2967	ApaG domain
DEJ70_01205	COG1178	ABC-type Fe3 transport system permease component
DEJ70_01255	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
DEJ70_01265	COG3451	type IV secretory pathway VirB4
DEJ70_01270	COG3704	protein secretion by the type IV secretion system
DEJ70_01275	COG3704	protein secretion by the type IV secretion system
DEJ70_01280	COG1340	protein secretion by the type IV secretion system
DEJ70_01280	COG3704	protein secretion by the type IV secretion system
DEJ70_01300	COG2801	Transposase and inactivated derivatives
DEJ70_01320	COG3344	reverse transcriptase
DEJ70_01330	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DEJ70_01335	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
DEJ70_01345	COG0072	phenylalanine-tRNA ligase activity
DEJ70_01345	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DEJ70_01355	COG0356	it plays a direct role in the translocation of protons across the membrane
DEJ70_01360	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DEJ70_01380	COG1612	heme a metabolic process
DEJ70_01385	COG0439	Biotin carboxylase
DEJ70_01395	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DEJ70_01400	COG0071	Belongs to the small heat shock protein (HSP20) family
DEJ70_01410	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
DEJ70_01425	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
DEJ70_01435	COG3827	peptidoglycan binding
DEJ70_01440	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
DEJ70_01460	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
DEJ70_01465	COG0343	queuine tRNA-ribosyltransferase activity
DEJ70_01475	COG0612	Peptidase, M16
DEJ70_01480	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
DEJ70_01525	COG0445	tRNA wobble uridine modification
DEJ70_01565	COG3451	type IV secretory pathway VirB4
DEJ70_01580	COG2070	2-Nitropropane dioxygenase
DEJ70_01590	COG0649	NAD binding
DEJ70_01600	COG3344	reverse transcriptase
DEJ70_01610	COG2801	Transposase and inactivated derivatives
DEJ70_01620	COG2801	Transposase and inactivated derivatives
DEJ70_01635	COG0745	RESPONSE REGULATOR receiver
DEJ70_01640	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
DEJ70_01645	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
DEJ70_01660	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
DEJ70_01665	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
DEJ70_01700	COG0726	polysaccharide deacetylase
DEJ70_01705	COG0768	penicillin binding
DEJ70_01710	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
DEJ70_01715	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
DEJ70_01720	COG0740	serine-type endopeptidase activity
DEJ70_01725	COG0544	peptidyl-prolyl cis-trans isomerase activity
DEJ70_01750	COG0220	tRNA (guanine-N7-)-methyltransferase activity
DEJ70_01750	COG2890	protein-(glutamine-N5) methyltransferase activity
DEJ70_01755	COG3344	reverse transcriptase
DEJ70_01765	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
DEJ70_01770	COG0049	tRNA binding
DEJ70_01775	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DEJ70_01780	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
DEJ70_01795	COG0250	Participates in transcription elongation, termination and antitermination
DEJ70_01800	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
DEJ70_01805	COG0081	regulation of translation
DEJ70_01810	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
DEJ70_01820	COG0085	RNA polymerase activity
DEJ70_01820	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
DEJ70_01835	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
DEJ70_01840	COG0151	Belongs to the GarS family
DEJ70_01850	COG0473	3-isopropylmalate dehydrogenase activity
DEJ70_01895	COG3344	reverse transcriptase
DEJ70_01925	COG2801	Transposase and inactivated derivatives
DEJ70_01945	COG2171	N-acyltransferase activity
DEJ70_01955	COG1053	succinate dehydrogenase
DEJ70_01965	COG0194	GDP metabolic process
DEJ70_01980	COG0540	Belongs to the ATCase OTCase family
DEJ70_01985	COG1840	ABC-type Fe3 transport system, periplasmic component
DEJ70_01995	COG2801	Transposase and inactivated derivatives
DEJ70_02005	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
DEJ70_02010	COG0254	rRNA binding
DEJ70_02015	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
DEJ70_02025	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
DEJ70_02040	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
DEJ70_02060	COG0291	Belongs to the bacterial ribosomal protein bL35 family
DEJ70_02065	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
DEJ70_02070	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
DEJ70_02080	COG0138	bifunctional purine biosynthesis protein purh
DEJ70_02085	COG2801	Transposase and inactivated derivatives
DEJ70_02095	COG2801	Transposase and inactivated derivatives
DEJ70_02115	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
DEJ70_02120	COG2801	Transposase and inactivated derivatives
DEJ70_02130	COG0285	dihydrofolate synthase activity
DEJ70_02145	COG2867	negative regulation of translational initiation
DEJ70_02150	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DEJ70_02180	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
DEJ70_02185	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
DEJ70_02190	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
DEJ70_02195	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DEJ70_02205	COG0592	DNA-directed DNA polymerase activity
DEJ70_02210	COG0101	tRNA pseudouridine synthase activity
DEJ70_02215	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
DEJ70_02225	COG0193	aminoacyl-tRNA hydrolase activity
DEJ70_02230	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
DEJ70_02250	COG0275	rRNA processing
DEJ70_02255	COG0477	Major facilitator Superfamily
DEJ70_02260	COG0024	Methionine aminopeptidase
DEJ70_02265	COG0849	cell division
DEJ70_02270	COG0242	peptide deformylase activity
DEJ70_02275	COG1573	uracil-dna glycosylase
DEJ70_02290	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
DEJ70_02305	COG1295	ribonuclease BN
DEJ70_02310	COG1028	Short-chain dehydrogenase reductase Sdr
DEJ70_02315	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
DEJ70_02325	COG0564	pseudouridine synthase activity
DEJ70_02335	COG2333	competence protein COMEC
DEJ70_02335	COG0658	competence protein
DEJ70_02355	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
DEJ70_02375	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DEJ70_02380	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
DEJ70_02390	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
DEJ70_02400	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DEJ70_02420	COG3344	reverse transcriptase
DEJ70_02430	COG2801	Transposase and inactivated derivatives
DEJ70_02445	COG0493	'glutamate synthase
DEJ70_02445	COG0543	2 iron, 2 sulfur cluster binding
DEJ70_02450	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DEJ70_02460	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
DEJ70_02470	COG0482	sulfurtransferase activity
DEJ70_02485	COG2885	chlorophyll binding
DEJ70_02490	COG0037	tRNA processing
DEJ70_02495	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DEJ70_02500	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DEJ70_02510	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DEJ70_02535	COG0508	dehydrogenase complex catalyzes the overall conversion of
DEJ70_02575	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
DEJ70_02585	COG2205	protein histidine kinase activity
DEJ70_02590	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DEJ70_02605	COG3344	reverse transcriptase
DEJ70_02620	COG0628	permease
DEJ70_02630	COG4974	Belongs to the 'phage' integrase family
DEJ70_02640	COG0268	Binds directly to 16S ribosomal RNA
DEJ70_02645	COG0372	Belongs to the citrate synthase family
DEJ70_02675	COG2255	four-way junction helicase activity
DEJ70_02680	COG0632	four-way junction helicase activity
DEJ70_02685	COG3474	cytochrome
DEJ70_02705	COG0839	Belongs to the complex I subunit 6 family
DEJ70_02710	COG0713	ATP synthesis coupled electron transport
DEJ70_02715	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
DEJ70_02720	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DEJ70_02725	COG1007	ATP synthesis coupled electron transport
DEJ70_02735	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
DEJ70_02740	COG2801	Transposase and inactivated derivatives
DEJ70_02775	COG2801	Transposase and inactivated derivatives
DEJ70_02810	COG3344	reverse transcriptase
DEJ70_02835	COG0542	response to heat
DEJ70_02840	COG2902	Dehydrogenase
DEJ70_02850	COG3706	GGDEF domain
DEJ70_02850	COG0745	RESPONSE REGULATOR receiver
DEJ70_02855	COG1381	Involved in DNA repair and RecF pathway recombination
DEJ70_02885	COG2801	Transposase and inactivated derivatives
DEJ70_02890	COG2801	Transposase and inactivated derivatives
DEJ70_02900	COG0305	Participates in initiation and elongation during chromosome replication
DEJ70_02930	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
DEJ70_02935	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
DEJ70_02950	COG2801	Transposase and inactivated derivatives
DEJ70_02965	COG0174	glutamine synthetase
DEJ70_02970	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
DEJ70_02985	COG3577	Aspartyl protease
DEJ70_02995	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
DEJ70_03010	COG0756	dUTP diphosphatase activity
DEJ70_03020	COG3344	reverse transcriptase
DEJ70_03030	COG0450	alkyl hydroperoxide reductase
DEJ70_03040	COG2801	Transposase and inactivated derivatives
DEJ70_03045	COG3344	reverse transcriptase
DEJ70_03085	COG3344	reverse transcriptase
DEJ70_03100	COG2801	Transposase and inactivated derivatives
DEJ70_03110	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
DEJ70_03115	COG1121	(ABC) transporter
DEJ70_03120	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
DEJ70_03135	COG0267	Belongs to the bacterial ribosomal protein bL33 family
DEJ70_03140	COG1530	ribonuclease E activity
DEJ70_03150	COG0271	Belongs to the BolA IbaG family
DEJ70_03155	COG0626	cystathionine gamma-synthase activity
DEJ70_03165	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
DEJ70_03175	COG0009	L-threonylcarbamoyladenylate synthase
DEJ70_03200	COG0305	Participates in initiation and elongation during chromosome replication
DEJ70_03210	COG1714	RDD family
DEJ70_03220	COG2801	Transposase and inactivated derivatives
DEJ70_03235	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
DEJ70_03240	COG0237	dephospho-CoA kinase activity
DEJ70_03250	COG3344	reverse transcriptase
DEJ70_03255	COG3344	reverse transcriptase
DEJ70_03270	COG3344	reverse transcriptase
DEJ70_03280	COG2801	Transposase and inactivated derivatives
DEJ70_03290	COG0666	response to abiotic stimulus
DEJ70_03295	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DEJ70_03310	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DEJ70_03320	COG2801	Transposase and inactivated derivatives
DEJ70_03330	COG3344	reverse transcriptase
DEJ70_03350	COG2801	Transposase and inactivated derivatives
DEJ70_03365	COG0805	protein transport
DEJ70_03390	COG3344	reverse transcriptase
DEJ70_03405	COG2801	Transposase and inactivated derivatives
DEJ70_03410	COG0617	tRNA 3'-terminal CCA addition
DEJ70_03420	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
DEJ70_03420	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DEJ70_03435	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DEJ70_03450	COG1074	ATP-dependent DNA helicase activity
DEJ70_03505	COG0358	DNA primase activity
DEJ70_03510	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
DEJ70_03530	COG2801	Transposase and inactivated derivatives
DEJ70_03545	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
DEJ70_03560	COG3344	reverse transcriptase
DEJ70_03565	COG2801	Transposase and inactivated derivatives
DEJ70_03580	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
DEJ70_03590	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DEJ70_03605	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
DEJ70_03615	COG0575	Belongs to the CDS family
DEJ70_03620	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
DEJ70_03630	COG0508	dehydrogenase complex catalyzes the overall conversion of
DEJ70_03635	COG3344	reverse transcriptase
DEJ70_03655	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
DEJ70_03670	COG0012	GTP binding
DEJ70_03680	COG1494	fructose-1,6-bisphosphatase
DEJ70_03695	COG3842	ATPase activity
DEJ70_03700	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DEJ70_03710	COG3932	Exopolysaccharide synthesis, ExoD
DEJ70_03715	COG0215	cysteine-tRNA ligase activity
DEJ70_03735	COG0109	protoheme IX farnesyltransferase activity
DEJ70_03740	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
DEJ70_03745	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
DEJ70_03750	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DEJ70_03760	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
DEJ70_03765	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DEJ70_03780	COG4974	Belongs to the 'phage' integrase family
DEJ70_03795	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
DEJ70_03805	COG0525	valine-tRNA ligase activity
DEJ70_03820	COG0284	orotidine-5'-phosphate decarboxylase activity
DEJ70_03835	COG2801	Transposase and inactivated derivatives
DEJ70_03845	COG3344	reverse transcriptase
DEJ70_03865	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
DEJ70_03880	COG2801	Transposase and inactivated derivatives
DEJ70_03890	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
DEJ70_03910	COG2801	Transposase and inactivated derivatives
DEJ70_03915	COG3344	reverse transcriptase
DEJ70_03925	COG2801	Transposase and inactivated derivatives
DEJ70_03940	COG0736	holo-[acyl-carrier-protein] synthase activity
DEJ70_03965	COG3344	reverse transcriptase
DEJ70_03990	COG2801	Transposase and inactivated derivatives
DEJ70_04005	COG1115	amino acid carrier protein
DEJ70_04015	COG2801	Transposase and inactivated derivatives
DEJ70_04020	COG0424	maF-like protein
DEJ70_04035	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
DEJ70_04045	COG2801	Transposase and inactivated derivatives
DEJ70_04050	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
DEJ70_04055	COG0218	Necessary for normal cell division and for the maintenance of normal septation
DEJ70_04060	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
DEJ70_04085	COG2801	Transposase and inactivated derivatives
DEJ70_04095	COG2814	Major facilitator Superfamily
DEJ70_04110	COG3344	reverse transcriptase
DEJ70_04120	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
DEJ70_04125	COG3344	reverse transcriptase
DEJ70_04135	COG2801	Transposase and inactivated derivatives
DEJ70_04150	COG1674	ftsk spoiiie
DEJ70_04165	COG2801	Transposase and inactivated derivatives
DEJ70_04180	COG2801	Transposase and inactivated derivatives
DEJ70_04190	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
DEJ70_04195	COG0148	phosphopyruvate hydratase activity
DEJ70_04210	COG3346	SURF1 family
DEJ70_04240	COG2801	Transposase and inactivated derivatives
DEJ70_04250	COG0114	fumarate hydratase activity
DEJ70_04265	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DEJ70_04270	COG2801	Transposase and inactivated derivatives
DEJ70_04285	COG0484	heat shock protein binding
DEJ70_04300	COG0823	Involved in the tonB-independent uptake of proteins
DEJ70_04305	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DEJ70_04310	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DEJ70_04315	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
DEJ70_04320	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
DEJ70_04340	COG0227	Belongs to the bacterial ribosomal protein bL28 family
DEJ70_04345	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
DEJ70_04360	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DEJ70_04385	COG3344	reverse transcriptase
DEJ70_04410	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DEJ70_04430	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DEJ70_04440	COG0508	dehydrogenase complex catalyzes the overall conversion of
DEJ70_04440	COG0022	dehydrogenase e1 component
DEJ70_04450	COG0681	Belongs to the peptidase S26 family
DEJ70_04465	COG0316	Belongs to the HesB IscA family
DEJ70_04470	COG0822	iron-sulfur transferase activity
DEJ70_04475	COG0552	protein localization to endoplasmic reticulum
DEJ70_04505	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
DEJ70_04510	COG0459	protein refolding
DEJ70_04520	COG2801	Transposase and inactivated derivatives
DEJ70_04525	COG3344	reverse transcriptase
DEJ70_04535	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
DEJ70_04540	COG0477	Major facilitator Superfamily
DEJ70_04550	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DEJ70_04560	COG2801	Transposase and inactivated derivatives
DEJ70_04570	COG3505	Type IV secretory pathway VirD4
DEJ70_04575	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
DEJ70_04590	COG3736	Type IV secretory pathway, component VirB8
DEJ70_04615	COG0717	Belongs to the dCTP deaminase family
DEJ70_04620	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DEJ70_04635	COG0233	cytoplasmic translational termination
DEJ70_04640	COG0528	UMP kinase activity
DEJ70_04645	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
DEJ70_04650	COG0052	Belongs to the universal ribosomal protein uS2 family
DEJ70_04660	COG1862	Preprotein translocase
DEJ70_04695	COG0504	CTP synthase activity
DEJ70_04705	COG0590	tRNA wobble adenosine to inosine editing
DEJ70_04715	COG4133	protoheme IX ABC transporter activity
DEJ70_04720	COG0018	arginyl-trna synthetase
DEJ70_04735	COG1132	(ABC) transporter
DEJ70_04745	COG2814	Major facilitator Superfamily
DEJ70_04780	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
DEJ70_04790	COG0281	malic enzyme
DEJ70_04790	COG0280	phosphate acetyltransferase
DEJ70_04795	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
DEJ70_04810	COG0217	transcriptional regulatory protein
DEJ70_04815	COG0739	heme binding
DEJ70_04850	COG0574	Belongs to the PEP-utilizing enzyme family
DEJ70_04850	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DEJ70_04855	COG2003	Belongs to the UPF0758 family
DEJ70_04950	COG2801	Transposase and inactivated derivatives
DEJ70_04975	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DEJ70_04980	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
DEJ70_04985	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DEJ70_04990	COG0792	nuclease activity
DEJ70_04995	COG0203	ribosomal protein L17
DEJ70_05000	COG0202	RNA polymerase activity
DEJ70_05005	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
DEJ70_05010	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
DEJ70_05015	COG0563	adenylate kinase activity
DEJ70_05020	COG0201	protein transport
DEJ70_05025	COG0200	Binds to the 23S rRNA
DEJ70_05030	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
DEJ70_05035	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
DEJ70_05040	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
DEJ70_05045	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
DEJ70_05050	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
DEJ70_05055	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
DEJ70_05060	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
DEJ70_05065	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
DEJ70_05070	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
DEJ70_05075	COG0255	Belongs to the universal ribosomal protein uL29 family
DEJ70_05080	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
DEJ70_05085	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
DEJ70_05090	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
DEJ70_05095	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
DEJ70_05100	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
DEJ70_05110	COG0088	Forms part of the polypeptide exit tunnel
DEJ70_05115	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
DEJ70_05120	COG0051	transcription antitermination factor activity, RNA binding
DEJ70_05125	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
DEJ70_05150	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
DEJ70_05165	COG3344	reverse transcriptase
DEJ70_05180	COG0261	This protein binds to 23S rRNA in the presence of protein L20
DEJ70_05185	COG0211	Belongs to the bacterial ribosomal protein bL27 family
DEJ70_05195	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
DEJ70_05200	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
DEJ70_05210	COG1845	cytochrome c oxidase, subunit III
DEJ70_05215	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
DEJ70_05220	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
DEJ70_05225	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
DEJ70_05225	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DEJ70_05250	COG3344	reverse transcriptase
DEJ70_05270	COG0230	Belongs to the bacterial ribosomal protein bL34 family
DEJ70_05275	COG0573	inorganic phosphate transmembrane transporter activity
DEJ70_05280	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
DEJ70_05285	COG0355	proton-transporting ATP synthase activity, rotational mechanism
DEJ70_05300	COG3344	reverse transcriptase
DEJ70_05320	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
DEJ70_05325	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
DEJ70_05335	COG0307	riboflavin synthase, alpha
DEJ70_05345	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DEJ70_05380	COG3344	reverse transcriptase
DEJ70_05390	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DEJ70_05390	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DEJ70_05395	COG0154	amidase activity
DEJ70_05400	COG0187	DNA topoisomerase II activity
DEJ70_05420	COG0688	phosphatidylethanolamine metabolic process
DEJ70_05425	COG1183	phosphatidylcholine synthase activity
DEJ70_05430	COG1115	amino acid carrier protein
DEJ70_05435	COG1115	amino acid carrier protein
DEJ70_05445	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
DEJ70_05455	COG1230	cation diffusion facilitator family transporter
DEJ70_05475	COG2801	Transposase and inactivated derivatives
DEJ70_05480	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DEJ70_05490	COG0322	excinuclease ABC activity
DEJ70_05495	COG0751	glycine-tRNA ligase activity
DEJ70_05500	COG0752	glycyl-tRNA synthetase alpha subunit
DEJ70_05520	COG2801	Transposase and inactivated derivatives
DEJ70_05525	COG0113	porphobilinogen synthase activity
DEJ70_05530	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
DEJ70_05535	COG1034	ATP synthesis coupled electron transport
DEJ70_05545	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
DEJ70_05560	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
DEJ70_05565	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
DEJ70_05575	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DEJ70_05590	COG3344	reverse transcriptase
DEJ70_05605	COG0571	ribonuclease III activity
DEJ70_05610	COG0167	dihydroorotate dehydrogenase activity
DEJ70_05625	COG1830	Aldolase
DEJ70_05635	COG0542	response to heat
DEJ70_05640	COG0513	Belongs to the DEAD box helicase family
DEJ70_05645	COG1278	Cold shock
DEJ70_05650	COG0312	modulator of DNA gyrase
DEJ70_05655	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
DEJ70_05670	COG4591	ABC-type transport system involved in lipoprotein release permease component
DEJ70_05695	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
DEJ70_05700	COG2009	succinate dehydrogenase
DEJ70_05725	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DEJ70_05730	COG1006	Multisubunit Na H antiporter MnhC subunit
DEJ70_05740	COG2111	Na H antiporter
DEJ70_05740	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
DEJ70_05755	COG1758	RNA polymerase activity
DEJ70_05765	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
DEJ70_05785	COG0330	HflC and HflK could
DEJ70_05805	COG2801	Transposase and inactivated derivatives
DEJ70_05815	COG2801	Transposase and inactivated derivatives
DEJ70_05905	COG2801	Transposase and inactivated derivatives
DEJ70_05910	COG0149	triose-phosphate isomerase activity
DEJ70_05920	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
DEJ70_05930	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
DEJ70_05940	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DEJ70_05945	COG0228	four-way junction DNA binding
DEJ70_05950	COG0142	geranyltranstransferase activity
DEJ70_05955	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
DEJ70_05965	COG2801	Transposase and inactivated derivatives
DEJ70_05985	COG2801	Transposase and inactivated derivatives
DEJ70_05990	COG0567	Dehydrogenase, E1 component
DEJ70_06000	COG2801	Transposase and inactivated derivatives
DEJ70_06030	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
DEJ70_06050	COG2801	Transposase and inactivated derivatives
DEJ70_06065	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
DEJ70_06070	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
DEJ70_06090	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
DEJ70_06100	COG0612	Peptidase, M16
DEJ70_06105	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
DEJ70_06110	COG0196	riboflavin kinase activity
DEJ70_06125	COG0481	GTPase activity
DEJ70_06140	COG1253	flavin adenine dinucleotide binding
DEJ70_06145	COG0519	Catalyzes the synthesis of GMP from XMP
DEJ70_06145	COG0518	GMP synthase (glutamine-hydrolyzing) activity
DEJ70_06150	COG1450	Type ii and iii secretion system protein
DEJ70_06170	COG3344	reverse transcriptase
DEJ70_06180	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
DEJ70_06185	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
DEJ70_06190	COG0257	Belongs to the bacterial ribosomal protein bL36 family
DEJ70_06210	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
DEJ70_06220	COG2801	Transposase and inactivated derivatives
DEJ70_06240	COG3344	reverse transcriptase
DEJ70_06255	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DEJ70_06265	COG3344	reverse transcriptase
DEJ70_06275	COG2801	Transposase and inactivated derivatives
DEJ70_06290	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DEJ70_06305	COG0812	UDP-N-acetylmuramate dehydrogenase activity
DEJ70_06310	COG1301	dicarboxylic acid transport
DEJ70_06315	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
DEJ70_06325	COG2801	Transposase and inactivated derivatives
DEJ70_06335	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DEJ70_06345	COG2801	Transposase and inactivated derivatives
DEJ70_06360	COG2801	Transposase and inactivated derivatives
DEJ70_06370	COG1181	Belongs to the D-alanine--D-alanine ligase family
DEJ70_06390	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
DEJ70_06395	COG0758	DNA mediated transformation
DEJ70_06405	COG2801	Transposase and inactivated derivatives
DEJ70_06415	COG0653	protein targeting
DEJ70_06435	COG1322	Protein conserved in bacteria
DEJ70_06440	COG1686	Belongs to the peptidase S11 family
DEJ70_06445	COG2003	Belongs to the UPF0758 family
DEJ70_06460	COG1138	Cytochrome C-type biogenesis protein
DEJ70_06470	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
DEJ70_06480	COG3344	reverse transcriptase
DEJ70_06495	COG3344	reverse transcriptase
DEJ70_06505	COG2239	Acts as a magnesium transporter
DEJ70_06525	COG0564	pseudouridine synthase activity
DEJ70_06530	COG0477	Major facilitator Superfamily
DEJ70_06550	COG3344	reverse transcriptase
DEJ70_06565	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
DEJ70_06580	COG3344	reverse transcriptase
DEJ70_06600	COG0477	Major facilitator Superfamily
DEJ70_06605	COG0564	pseudouridine synthase activity
DEJ70_06625	COG2239	Acts as a magnesium transporter
DEJ70_06635	COG3344	reverse transcriptase
DEJ70_06700	COG2801	Transposase and inactivated derivatives
DEJ70_06715	COG2003	Belongs to the UPF0758 family
DEJ70_06745	COG2801	Transposase and inactivated derivatives
DEJ70_06765	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
DEJ70_06770	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
DEJ70_06775	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
DEJ70_06785	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DEJ70_06800	COG0492	ferredoxin-NADP+ reductase activity
DEJ70_06820	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
DEJ70_06840	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
DEJ70_06845	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
DEJ70_06850	COG0336	Belongs to the RNA methyltransferase TrmD family
DEJ70_06855	COG0335	large ribosomal subunit rRNA binding
DEJ70_06860	COG0581	inorganic phosphate transmembrane transporter activity
DEJ70_06865	COG0047	phosphoribosylformylglycinamidine synthase activity
DEJ70_06870	COG2801	Transposase and inactivated derivatives
DEJ70_06875	COG0259	pyridoxamine-phosphate oxidase activity
DEJ70_06880	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
DEJ70_06915	COG0489	protein tyrosine kinase activity
DEJ70_06930	COG3344	reverse transcriptase
DEJ70_06945	COG2801	Transposase and inactivated derivatives
DEJ70_06970	COG0772	Belongs to the SEDS family
DEJ70_06975	COG1104	cysteine desulfurase activity
DEJ70_06985	COG2801	Transposase and inactivated derivatives
DEJ70_07005	COG3344	reverse transcriptase
DEJ70_07015	COG2003	Belongs to the UPF0758 family
DEJ70_07020	COG1396	sequence-specific DNA binding
DEJ70_07035	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
DEJ70_07040	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DEJ70_07060	COG1132	(ABC) transporter
DEJ70_07085	COG0697	spore germination
DEJ70_07110	COG0312	modulator of DNA gyrase
DEJ70_07115	COG0723	plastoquinol--plastocyanin reductase activity
DEJ70_07140	COG1268	BioY protein
DEJ70_07155	COG3344	reverse transcriptase
DEJ70_07170	COG1253	flavin adenine dinucleotide binding