locus-tag class description WRi_000010 PF00308 Bacterial dnaA protein WRi_000010 PF08299 Bacterial dnaA protein helix-turn-helix WRi_000010 PF11638 DnaA N-terminal domain WRi_000040 PF00925 GTP cyclohydrolase II WRi_000050 PF04335 VirB8 protein WRi_000080 PF00437 Type II/IV secretion system protein WRi_000090 PF02534 Type IV secretory system Conjugative DNA transfer WRi_000110 PF02390 Putative methyltransferase WRi_000110 PF05175 Methyltransferase small domain WRi_000110 PF17827 PrmC N-terminal domain WRi_000120 PF00164 Ribosomal protein S12/S23 WRi_000130 PF00177 Ribosomal protein S7p/S5e WRi_000140 PF00679 Elongation factor G C-terminus WRi_000140 PF03144 Elongation factor Tu domain 2 WRi_000140 PF14492 Elongation Factor G, domain II WRi_000140 PF03764 Elongation factor G, domain IV WRi_000140 PF00009 Elongation factor Tu GTP binding domain WRi_000150 PF03143 Elongation factor Tu C-terminal domain WRi_000150 PF03144 Elongation factor Tu domain 2 WRi_000150 PF00009 Elongation factor Tu GTP binding domain WRi_000180 PF00467 KOW motif WRi_000180 PF02357 Transcription termination factor nusG WRi_000190 PF03946 Ribosomal protein L11, N-terminal domain WRi_000190 PF00298 Ribosomal protein L11, RNA binding domain WRi_000200 PF00687 Ribosomal protein L1p/L10e family WRi_000210 PF00466 Ribosomal protein L10 WRi_000230 PF04997 RNA polymerase Rpb1, domain 1 WRi_000230 PF05000 RNA polymerase Rpb1, domain 4 WRi_000230 PF04998 RNA polymerase Rpb1, domain 5 WRi_000230 PF04563 RNA polymerase beta subunit WRi_000230 PF04561 RNA polymerase Rpb2, domain 2 WRi_000230 PF04565 RNA polymerase Rpb2, domain 3 WRi_000230 PF00623 RNA polymerase Rpb1, domain 2 WRi_000230 PF10385 RNA polymerase beta subunit external 1 domain WRi_000230 PF04983 RNA polymerase Rpb1, domain 3 WRi_000230 PF00562 RNA polymerase Rpb2, domain 6 WRi_000230 PF04560 RNA polymerase Rpb2, domain 7 WRi_000240 PF01207 Dihydrouridine synthase (Dus) WRi_000260 PF02403 Seryl-tRNA synthetase N-terminal domain WRi_000260 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WRi_000270 PF02844 Phosphoribosylglycinamide synthetase, N domain WRi_000270 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain WRi_000270 PF02843 Phosphoribosylglycinamide synthetase, C domain WRi_000300 PF14572 Phosphoribosyl synthetase-associated domain WRi_000300 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase WRi_000310 PF02686 Glu-tRNAGln amidotransferase C subunit WRi_000320 PF04052 TolB amino-terminal domain WRi_000320 PF07676 WD40-like Beta Propeller Repeat WRi_000330 PF12706 Beta-lactamase superfamily domain WRi_000330 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain WRi_000330 PF17770 Ribonuclease J C-terminal domain WRi_000340 PF01556 DnaJ C terminal domain WRi_000340 PF00684 DnaJ central domain WRi_000340 PF00226 DnaJ domain WRi_000430 PF00883 Cytosol aminopeptidase family, catalytic domain WRi_000430 PF02789 Cytosol aminopeptidase family, N-terminal domain WRi_000450 PF00216 Bacterial DNA-binding protein WRi_000470 PF01551 Peptidase family M23 WRi_000480 PF00133 tRNA synthetases class I (I, L, M and V) WRi_000480 PF08264 Anticodon-binding domain of tRNA WRi_000480 PF09334 tRNA synthetases class I (M) WRi_000480 PF13603 Leucyl-tRNA synthetase, Domain 2 WRi_000550 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ WRi_000570 PF00380 Ribosomal protein S9/S16 WRi_000580 PF00572 Ribosomal protein L13 WRi_000600 PF10691 Protein of unknown function (DUF2497) WRi_000610 PF01728 FtsJ-like methyltransferase WRi_000780 PF10609 NUBPL iron-transfer P-loop NTPase WRi_000790 PF01494 FAD binding domain WRi_000810 PF01195 Peptidyl-tRNA hydrolase WRi_000820 PF14693 Ribosomal protein TL5, C-terminal domain WRi_000820 PF01386 Ribosomal L25p family WRi_000850 PF01795 MraW methylase family WRi_000860 PF00083 Sugar (and other) transporter WRi_000860 PF07690 Major Facilitator Superfamily WRi_000870 PF00557 Metallopeptidase family M24 WRi_000880 PF02491 SHS2 domain inserted in FTSA WRi_000890 PF01327 Polypeptide deformylase WRi_000900 PF03167 Uracil DNA glycosylase superfamily WRi_000920 PF00384 Molybdopterin oxidoreductase WRi_000920 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WRi_000920 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal WRi_000930 PF00146 NADH dehydrogenase WRi_000940 PF00490 Delta-aminolevulinic acid dehydratase WRi_000960 PF02091 Glycyl-tRNA synthetase alpha subunit WRi_000970 PF05746 DALR anticodon binding domain WRi_000970 PF02092 Glycyl-tRNA synthetase beta subunit WRi_000980 PF01541 GIY-YIG catalytic domain WRi_000980 PF02151 UvrB/uvrC motif WRi_000980 PF08459 UvrC Helix-hairpin-helix N-terminal WRi_001000 PF08402 TOBE domain WRi_001000 PF00005 ABC transporter WRi_001010 PF02416 mttA/Hcf106 family WRi_001030 PF06055 Exopolysaccharide synthesis, ExoD WRi_001040 PF09190 DALR domain WRi_001040 PF01406 tRNA synthetases class I (C) catalytic domain WRi_001070 PF02934 GatB/GatE catalytic domain WRi_001070 PF02637 GatB domain WRi_001100 PF03652 Holliday junction resolvase WRi_001110 PF02075 Crossover junction endodeoxyribonuclease RuvC WRi_001120 PF00510 Cytochrome c oxidase subunit III WRi_001140 PF03070 TENA/THI-4/PQQC family WRi_001150 PF02773 S-adenosylmethionine synthetase, C-terminal domain WRi_001150 PF00438 S-adenosylmethionine synthetase, N-terminal domain WRi_001150 PF02772 S-adenosylmethionine synthetase, central domain WRi_001170 PF01016 Ribosomal L27 protein WRi_001180 PF00829 Ribosomal prokaryotic L21 protein WRi_001190 PF14602 Hexapeptide repeat of succinyl-transferase WRi_001190 PF12804 MobA-like NTP transferase domain WRi_001190 PF00132 Bacterial transferase hexapeptide (six repeats) WRi_001200 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain WRi_001200 PF01409 tRNA synthetases class II core domain (F) WRi_001220 PF00677 Lumazine binding domain WRi_001290 PF01580 FtsK/SpoIIIE family WRi_001290 PF09397 Ftsk gamma domain WRi_001290 PF13491 4TM region of DNA translocase FtsK/SpoIIIE WRi_001290 PF17854 FtsK alpha domain WRi_001320 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WRi_001360 PF04551 GcpE protein WRi_001420 PF00204 DNA gyrase B WRi_001420 PF00986 DNA gyrase B subunit, carboxyl terminus WRi_001420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WRi_001420 PF01751 Toprim domain WRi_001430 PF02630 SCO1/SenC WRi_001440 PF00929 Exonuclease WRi_001460 PF02556 Preprotein translocase subunit SecB WRi_001470 PF00694 Aconitase C-terminal domain WRi_001470 PF00330 Aconitase family (aconitate hydratase) WRi_001480 PF18327 Proline utilization A proline dehydrogenase N-terminal domain WRi_001480 PF14850 DNA-binding domain of Proline dehydrogenase WRi_001480 PF01619 Proline dehydrogenase WRi_001480 PF00171 Aldehyde dehydrogenase family WRi_001510 PF00893 Small Multidrug Resistance protein WRi_001520 PF00893 Small Multidrug Resistance protein WRi_001530 PF07943 Penicillin-binding protein 5, C-terminal domain WRi_001530 PF00768 D-alanyl-D-alanine carboxypeptidase WRi_001540 PF03799 Cell division protein FtsQ WRi_001540 PF08478 POTRA domain, FtsQ-type WRi_001550 PF01820 D-ala D-ala ligase N-terminus WRi_001550 PF07478 D-ala D-ala ligase C-terminus WRi_001570 PF11953 Domain of unknown function (DUF3470) WRi_001570 PF00037 4Fe-4S binding domain WRi_001580 PF17782 DprA winged helix domain WRi_001580 PF02481 DNA recombination-mediator protein A WRi_001590 PF00121 Triosephosphate isomerase WRi_001610 PF00398 Ribosomal RNA adenine dimethylase WRi_001620 PF00571 CBS domain WRi_001620 PF00478 IMP dehydrogenase / GMP reductase domain WRi_001660 PF02355 Protein export membrane protein WRi_001750 PF01121 Dephospho-CoA kinase WRi_001760 PF01612 3'-5' exonuclease WRi_001760 PF00570 HRDC domain WRi_001780 PF05190 MutS family domain IV WRi_001780 PF00488 MutS domain V WRi_001780 PF05188 MutS domain II WRi_001780 PF05192 MutS domain III WRi_001780 PF01624 MutS domain I WRi_001810 PF00571 CBS domain WRi_001810 PF03471 Transporter associated domain WRi_001810 PF03741 Integral membrane protein TerC family WRi_001820 PF02540 NAD synthase WRi_001820 PF00958 GMP synthase C terminal domain WRi_001820 PF00117 Glutamine amidotransferase class-I WRi_001830 PF03477 ATP cone domain WRi_001830 PF00317 Ribonucleotide reductase, all-alpha domain WRi_001830 PF02867 Ribonucleotide reductase, barrel domain WRi_001840 PF01209 ubiE/COQ5 methyltransferase family WRi_001900 PF00468 Ribosomal protein L34 WRi_001910 PF00528 Binding-protein-dependent transport system inner membrane component WRi_001920 PF02874 ATP synthase alpha/beta family, beta-barrel domain WRi_001920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WRi_001930 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain WRi_002000 PF00596 Class II Aldolase and Adducin N-terminal domain WRi_002020 PF00814 Glycoprotease family WRi_002040 PF00268 Ribonucleotide reductase, small chain WRi_002090 PF02565 Recombination protein O C terminal WRi_002090 PF11967 Recombination protein O N terminal WRi_002100 PF00990 Diguanylate cyclase, GGDEF domain WRi_002100 PF00072 Response regulator receiver domain WRi_002120 PF05088 Bacterial NAD-glutamate dehydrogenase WRi_002130 PF17871 AAA lid domain WRi_002130 PF07724 AAA domain (Cdc48 subfamily) WRi_002130 PF00004 ATPase family associated with various cellular activities (AAA) WRi_002130 PF10431 C-terminal, D2-small domain, of ClpB protein WRi_002130 PF02861 Clp amino terminal domain, pathogenicity island component WRi_002170 PF00156 Phosphoribosyl transferase domain WRi_002180 PF00375 Sodium:dicarboxylate symporter family WRi_002190 PF01979 Amidohydrolase family WRi_002210 PF01578 Cytochrome C assembly protein WRi_002210 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal WRi_002230 PF02355 Protein export membrane protein WRi_002230 PF07549 SecD/SecF GG Motif WRi_002260 PF02096 60Kd inner membrane protein WRi_002260 PF14849 YidC periplasmic domain WRi_002270 PF00885 6,7-dimethyl-8-ribityllumazine synthase WRi_002280 PF01029 NusB family WRi_002310 PF00692 dUTPase WRi_002320 PF00696 Amino acid kinase family WRi_002330 PF01926 50S ribosome-binding GTPase WRi_002340 PF00472 RF-1 domain WRi_002340 PF03462 PCRF domain WRi_002350 PF07690 Major Facilitator Superfamily WRi_002400 PF02646 RmuC family WRi_002430 PF01425 Amidase WRi_002440 PF04055 Radical SAM superfamily WRi_002440 PF00919 Uncharacterized protein family UPF0004 WRi_002490 PF03330 Lytic transglycolase WRi_002500 PF08245 Mur ligase middle domain WRi_002500 PF02875 Mur ligase family, glutamate ligase domain WRi_002500 PF01225 Mur ligase family, catalytic domain WRi_002510 PF00113 Enolase, C-terminal TIM barrel domain WRi_002510 PF03952 Enolase, N-terminal domain WRi_002520 PF01018 GTP1/OBG WRi_002520 PF01926 50S ribosome-binding GTPase WRi_002550 PF00462 Glutaredoxin WRi_002570 PF01515 Phosphate acetyl/butaryl transferase WRi_002570 PF03949 Malic enzyme, NAD binding domain WRi_002570 PF00390 Malic enzyme, N-terminal domain WRi_002580 PF01066 CDP-alcohol phosphatidyltransferase WRi_002610 PF13525 Outer membrane lipoprotein WRi_002620 PF01709 Transcriptional regulator WRi_002630 PF01476 LysM domain WRi_002630 PF01551 Peptidase family M23 WRi_002630 PF08525 Opacity-associated protein A N-terminal motif WRi_002690 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WRi_002690 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WRi_002700 PF00902 Sec-independent protein translocase protein (TatC) WRi_002710 PF01316 Arginine repressor, DNA binding domain WRi_002710 PF02863 Arginine repressor, C-terminal domain WRi_002720 PF00497 Bacterial extracellular solute-binding proteins, family 3 WRi_002730 PF00528 Binding-protein-dependent transport system inner membrane component WRi_002740 PF00005 ABC transporter WRi_002770 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family WRi_002810 PF08264 Anticodon-binding domain of tRNA WRi_002810 PF00133 tRNA synthetases class I (I, L, M and V) WRi_002850 PF06418 CTP synthase N-terminus WRi_002850 PF00117 Glutamine amidotransferase class-I WRi_002860 PF14437 MafB19-like deaminase WRi_002890 PF00083 Sugar (and other) transporter WRi_002890 PF07690 Major Facilitator Superfamily WRi_002910 PF00004 ATPase family associated with various cellular activities (AAA) WRi_002910 PF17862 AAA+ lid domain WRi_002910 PF01434 Peptidase family M41 WRi_002920 PF02780 Transketolase, C-terminal domain WRi_002920 PF00364 Biotin-requiring enzyme WRi_002920 PF02779 Transketolase, pyrimidine binding domain WRi_002950 PF06421 GTP-binding protein LepA C-terminus WRi_002950 PF00679 Elongation factor G C-terminus WRi_002950 PF14492 Elongation Factor G, domain II WRi_002950 PF00009 Elongation factor Tu GTP binding domain WRi_002950 PF03144 Elongation factor Tu domain 2 WRi_003010 PF01743 Poly A polymerase head domain WRi_003010 PF12627 Probable RNA and SrmB- binding site of polymerase A WRi_003010 PF13735 tRNA nucleotidyltransferase domain 2 putative WRi_003030 PF06071 Protein of unknown function (DUF933) WRi_003030 PF01926 50S ribosome-binding GTPase WRi_003060 PF00625 Guanylate kinase WRi_003080 PF00890 FAD binding domain WRi_003080 PF02910 Fumarate reductase flavoprotein C-term WRi_003090 PF00749 tRNA synthetases class I (E and Q), catalytic domain WRi_003110 PF02785 Biotin carboxylase C-terminal domain WRi_003110 PF00289 Biotin carboxylase, N-terminal domain WRi_003110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WRi_003120 PF02628 Cytochrome oxidase assembly protein WRi_003160 PF00137 ATP synthase subunit C WRi_003170 PF00119 ATP synthase A chain WRi_003190 PF01588 Putative tRNA binding domain WRi_003190 PF03484 tRNA synthetase B5 domain WRi_003190 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain WRi_003190 PF03147 Ferredoxin-fold anticodon binding domain WRi_003190 PF03483 B3/4 domain WRi_003210 PF00133 tRNA synthetases class I (I, L, M and V) WRi_003210 PF08264 Anticodon-binding domain of tRNA WRi_003220 PF00854 POT family WRi_003230 PF00919 Uncharacterized protein family UPF0004 WRi_003230 PF01938 TRAM domain WRi_003230 PF04055 Radical SAM superfamily WRi_003250 PF00676 Dehydrogenase E1 component WRi_003260 PF00849 RNA pseudouridylate synthase WRi_003260 PF01479 S4 domain WRi_003270 PF00083 Sugar (and other) transporter WRi_003270 PF08946 Osmosensory transporter coiled coil WRi_003280 PF00152 tRNA synthetases class II (D, K and N) WRi_003280 PF02938 GAD domain WRi_003280 PF01336 OB-fold nucleic acid binding domain WRi_003300 PF00005 ABC transporter WRi_003390 PF01467 Cytidylyltransferase-like WRi_003420 PF01255 Putative undecaprenyl diphosphate synthase WRi_003430 PF01765 Ribosome recycling factor WRi_003440 PF00696 Amino acid kinase family WRi_003450 PF00889 Elongation factor TS WRi_003460 PF00318 Ribosomal protein S2 WRi_003480 PF02699 Preprotein translocase subunit WRi_003490 PF01380 SIS domain WRi_003510 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WRi_003550 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain WRi_003550 PF01565 FAD binding domain WRi_003560 PF03900 Porphobilinogen deaminase, C-terminal domain WRi_003560 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain WRi_003570 PF02817 e3 binding domain WRi_003570 PF00364 Biotin-requiring enzyme WRi_003570 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WRi_003630 PF07517 SecA DEAD-like domain WRi_003630 PF01043 SecA preprotein cross-linking domain WRi_003630 PF07516 SecA Wing and Scaffold domain WRi_003630 PF02810 SEC-C motif WRi_003660 PF00923 Transaldolase/Fructose-6-phosphate aldolase WRi_003700 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WRi_003750 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain WRi_003750 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain WRi_003760 PF02441 Flavoprotein WRi_003770 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) WRi_003780 PF01595 Cyclin M transmembrane N-terminal domain WRi_003780 PF03471 Transporter associated domain WRi_003780 PF00571 CBS domain WRi_003790 PF00202 Aminotransferase class-III WRi_003800 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit WRi_003840 PF03485 Arginyl tRNA synthetase N terminal domain WRi_003840 PF05746 DALR anticodon binding domain WRi_003840 PF00750 tRNA synthetases class I (R) WRi_003890 PF00005 ABC transporter WRi_003890 PF00664 ABC transporter transmembrane region WRi_003950 PF01098 Cell cycle protein WRi_003960 PF01209 ubiE/COQ5 methyltransferase family WRi_003970 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family WRi_003970 PF04055 Radical SAM superfamily WRi_003980 PF00830 Ribosomal L28 family WRi_004000 PF04384 Iron-sulphur cluster assembly WRi_004020 PF01479 S4 domain WRi_004020 PF00163 Ribosomal protein S4/S9 N-terminal domain WRi_004030 PF00456 Transketolase, thiamine diphosphate binding domain WRi_004030 PF02779 Transketolase, pyrimidine binding domain WRi_004030 PF02780 Transketolase, C-terminal domain WRi_004080 PF07690 Major Facilitator Superfamily WRi_004100 PF00692 dUTPase WRi_004130 PF02386 Cation transport protein WRi_004140 PF00571 CBS domain WRi_004140 PF03448 MgtE intracellular N domain WRi_004140 PF01769 Divalent cation transporter WRi_004150 PF00472 RF-1 domain WRi_004150 PF03462 PCRF domain WRi_004190 PF00005 ABC transporter WRi_004200 PF05173 Dihydrodipicolinate reductase, C-terminus WRi_004200 PF01113 Dihydrodipicolinate reductase, N-terminus WRi_004240 PF00950 ABC 3 transport family WRi_004260 PF08544 GHMP kinases C terminal WRi_004260 PF00288 GHMP kinases N terminal domain WRi_004270 PF00580 UvrD/REP helicase N-terminal domain WRi_004270 PF13361 UvrD-like helicase C-terminal domain WRi_004270 PF12705 PD-(D/E)XK nuclease superfamily WRi_004290 PF04002 RadC-like JAB domain WRi_004310 PF06271 RDD family WRi_004330 PF00772 DnaB-like helicase N terminal domain WRi_004330 PF03796 DnaB-like helicase C terminal domain WRi_004350 PF09334 tRNA synthetases class I (M) WRi_004350 PF08264 Anticodon-binding domain of tRNA WRi_004370 PF08241 Methyltransferase domain WRi_004380 PF13662 Toprim domain WRi_004380 PF08275 DNA primase catalytic core, N-terminal domain WRi_004380 PF01807 CHC2 zinc finger WRi_004400 PF13784 Fic/DOC family N-terminal WRi_004400 PF02661 Fic/DOC family WRi_004410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WRi_004460 PF00444 Ribosomal protein L36 WRi_004470 PF03618 Kinase/pyrophosphorylase WRi_004480 PF01578 Cytochrome C assembly protein WRi_004490 PF00709 Adenylosuccinate synthetase WRi_004520 PF01176 Translation initiation factor 1A / IF-1 WRi_004530 PF02545 Maf-like protein WRi_004550 PF01235 Sodium:alanine symporter family WRi_004590 PF00118 TCP-1/cpn60 chaperonin family WRi_004600 PF00166 Chaperonin 10 Kd subunit WRi_004610 PF01571 Aminomethyltransferase folate-binding domain WRi_004620 PF17768 RecJ OB domain WRi_004620 PF02272 DHHA1 domain WRi_004620 PF01368 DHH family WRi_004640 PF00115 Cytochrome C and Quinol oxidase polypeptide I WRi_004660 PF00005 ABC transporter WRi_004660 PF00664 ABC transporter transmembrane region WRi_004670 PF02190 ATP-dependent protease La (LON) substrate-binding domain WRi_004670 PF00004 ATPase family associated with various cellular activities (AAA) WRi_004670 PF05362 Lon protease (S16) C-terminal proteolytic domain WRi_004680 PF07724 AAA domain (Cdc48 subfamily) WRi_004680 PF10431 C-terminal, D2-small domain, of ClpB protein WRi_004680 PF06689 ClpX C4-type zinc finger WRi_004690 PF00574 Clp protease WRi_004700 PF05697 Bacterial trigger factor protein (TF) WRi_004700 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WRi_004700 PF05698 Bacterial trigger factor protein (TF) C-terminus WRi_004720 PF04972 BON domain WRi_004730 PF02951 Prokaryotic glutathione synthetase, N-terminal domain WRi_004730 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain WRi_004740 PF03033 Glycosyltransferase family 28 N-terminal domain WRi_004740 PF04101 Glycosyltransferase family 28 C-terminal domain WRi_004760 PF07992 Pyridine nucleotide-disulphide oxidoreductase WRi_004760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WRi_004800 PF00075 RNase H WRi_004810 PF01040 UbiA prenyltransferase family WRi_004820 PF00115 Cytochrome C and Quinol oxidase polypeptide I WRi_004830 PF02790 Cytochrome C oxidase subunit II, transmembrane domain WRi_004830 PF00116 Cytochrome C oxidase subunit II, periplasmic domain WRi_004860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WRi_004860 PF00529 HlyD membrane-fusion protein of T1SS WRi_004900 PF00925 GTP cyclohydrolase II WRi_004900 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase WRi_004910 PF01272 Transcription elongation factor, GreA/GreB, C-term WRi_004910 PF03449 Transcription elongation factor, N-terminal WRi_004920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WRi_004920 PF00306 ATP synthase alpha/beta chain, C terminal domain WRi_004920 PF02874 ATP synthase alpha/beta family, beta-barrel domain WRi_004930 PF00213 ATP synthase delta (OSCP) subunit WRi_004940 PF02021 Uncharacterised protein family UPF0102 WRi_004950 PF01196 Ribosomal protein L17 WRi_004960 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain WRi_004960 PF01000 RNA polymerase Rpb3/RpoA insert domain WRi_004960 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain WRi_004970 PF00411 Ribosomal protein S11 WRi_004980 PF00416 Ribosomal protein S13/S18 WRi_005000 PF00344 SecY translocase WRi_005010 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A WRi_005020 PF03719 Ribosomal protein S5, C-terminal domain WRi_005020 PF00333 Ribosomal protein S5, N-terminal domain WRi_005030 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast WRi_005040 PF00347 Ribosomal protein L6 WRi_005050 PF00410 Ribosomal protein S8 WRi_005060 PF00253 Ribosomal protein S14p/S29e WRi_005070 PF00281 Ribosomal protein L5 WRi_005070 PF00673 ribosomal L5P family C-terminus WRi_005080 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 WRi_005090 PF00238 Ribosomal protein L14p/L23e WRi_005100 PF00366 Ribosomal protein S17 WRi_005110 PF00831 Ribosomal L29 protein WRi_005120 PF00252 Ribosomal protein L16p/L10e WRi_005130 PF07650 KH domain WRi_005130 PF00189 Ribosomal protein S3, C-terminal domain WRi_005140 PF00237 Ribosomal protein L22p/L17e WRi_005150 PF00203 Ribosomal protein S19 WRi_005160 PF03947 Ribosomal Proteins L2, C-terminal domain WRi_005160 PF00181 Ribosomal Proteins L2, RNA binding domain WRi_005170 PF00276 Ribosomal protein L23 WRi_005180 PF00573 Ribosomal protein L4/L1 family WRi_005190 PF00297 Ribosomal protein L3 WRi_005200 PF00338 Ribosomal protein S10p/S20e WRi_005210 PF00009 Elongation factor Tu GTP binding domain WRi_005210 PF03143 Elongation factor Tu C-terminal domain WRi_005210 PF03144 Elongation factor Tu domain 2 WRi_005240 PF00117 Glutamine amidotransferase class-I WRi_005240 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain WRi_005270 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded WRi_005300 PF02896 PEP-utilising enzyme, TIM barrel domain WRi_005300 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain WRi_005300 PF00391 PEP-utilising enzyme, mobile domain WRi_005330 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WRi_005400 PF00239 Resolvase, N terminal domain WRi_005400 PF02796 Helix-turn-helix domain of resolvase WRi_005620 PF00023 Ankyrin repeat WRi_005640 PF18755 Restriction Enzyme Adenine Methylase Associated WRi_005640 PF01555 DNA methylase WRi_005670 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WRi_005670 PF01348 Type II intron maturase WRi_005720 PF00271 Helicase conserved C-terminal domain WRi_005720 PF12419 SNF2 Helicase protein WRi_005720 PF00176 SNF2 family N-terminal domain WRi_005730 PF00132 Bacterial transferase hexapeptide (six repeats) WRi_005730 PF14602 Hexapeptide repeat of succinyl-transferase WRi_005730 PF12804 MobA-like NTP transferase domain WRi_005740 PF16363 GDP-mannose 4,6 dehydratase WRi_005780 PF00664 ABC transporter transmembrane region WRi_005780 PF00005 ABC transporter WRi_005790 PF01212 Beta-eliminating lyase WRi_005800 PF01212 Beta-eliminating lyase WRi_005820 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain WRi_005820 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain WRi_005820 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain WRi_005830 PF00892 EamA-like transporter family WRi_005870 PF04002 RadC-like JAB domain WRi_005880 PF01381 Helix-turn-helix WRi_005980 PF07992 Pyridine nucleotide-disulphide oxidoreductase WRi_005990 PF00578 AhpC/TSA family WRi_005990 PF10417 C-terminal domain of 1-Cys peroxiredoxin WRi_006010 PF00462 Glutaredoxin WRi_006020 PF06574 FAD synthetase WRi_006020 PF01687 Riboflavin kinase WRi_006030 PF01252 Signal peptidase (SPase) II WRi_006040 PF05193 Peptidase M16 inactive domain WRi_006040 PF00675 Insulinase (Peptidase family M16) WRi_006060 PF00551 Formyl transferase WRi_006100 PF01668 SmpB protein WRi_006110 PF01790 Prolipoprotein diacylglyceryl transferase WRi_006120 PF00005 ABC transporter WRi_006120 PF00664 ABC transporter transmembrane region WRi_006180 PF00436 Single-strand binding protein family WRi_006190 PF00701 Dihydrodipicolinate synthetase family WRi_006200 PF12826 Helix-hairpin-helix motif WRi_006200 PF03119 NAD-dependent DNA ligase C4 zinc finger domain WRi_006200 PF03120 NAD-dependent DNA ligase OB-fold domain WRi_006200 PF00533 BRCA1 C Terminus (BRCT) domain WRi_006200 PF01653 NAD-dependent DNA ligase adenylation domain WRi_006210 PF00749 tRNA synthetases class I (E and Q), catalytic domain WRi_006220 PF14579 Helix-hairpin-helix motif WRi_006220 PF02811 PHP domain WRi_006220 PF07733 Bacterial DNA polymerase III alpha NTPase domain WRi_006220 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WRi_006230 PF01250 Ribosomal protein S6 WRi_006240 PF01084 Ribosomal protein S18 WRi_006250 PF03948 Ribosomal protein L9, C-terminal domain WRi_006250 PF01281 Ribosomal protein L9, N-terminal domain WRi_006260 PF10397 Adenylosuccinate lyase C-terminus WRi_006260 PF00206 Lyase WRi_006280 PF13685 Iron-containing alcohol dehydrogenase WRi_006310 PF00730 HhH-GPD superfamily base excision DNA repair protein WRi_006310 PF10576 Iron-sulfur binding domain of endonuclease III WRi_006310 PF00633 Helix-hairpin-helix motif WRi_006330 PF18324 Hypothetical protein TT1725 WRi_006330 PF00180 Isocitrate/isopropylmalate dehydrogenase WRi_006360 PF07498 Rho termination factor, N-terminal domain WRi_006360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WRi_006360 PF07497 Rho termination factor, RNA-binding domain WRi_006430 PF00814 Glycoprotease family WRi_006450 PF00266 Aminotransferase class-V WRi_006460 PF02129 X-Pro dipeptidyl-peptidase (S15 family) WRi_006470 PF00005 ABC transporter WRi_006480 PF01521 Iron-sulphur cluster biosynthesis WRi_006490 PF13286 Phosphohydrolase-associated domain WRi_006490 PF01966 HD domain WRi_006500 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region WRi_006500 PF01872 RibD C-terminal domain WRi_006530 PF00834 Ribulose-phosphate 3 epimerase family WRi_006550 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal WRi_006550 PF14602 Hexapeptide repeat of succinyl-transferase WRi_006550 PF00132 Bacterial transferase hexapeptide (six repeats) WRi_006600 PF00905 Penicillin binding protein transpeptidase domain WRi_006600 PF03717 Penicillin-binding Protein dimerisation domain WRi_006610 PF03422 Carbohydrate binding module (family 6) WRi_006610 PF00457 Glycosyl hydrolases family 11 WRi_006610 PF01522 Polysaccharide deacetylase WRi_006620 PF04002 RadC-like JAB domain WRi_006800 PF00011 Hsp20/alpha crystallin family WRi_006980 PF17482 Phage tail sheath C-terminal domain WRi_006980 PF04984 Phage tail sheath protein subtilisin-like domain WRi_007190 PF17761 DUF1016 N-terminal domain WRi_007190 PF06250 YhcG PDDEXK nuclease domain WRi_007250 PF00589 Phage integrase family WRi_007250 PF02899 Phage integrase, N-terminal SAM-like domain WRi_007260 PF07992 Pyridine nucleotide-disulphide oxidoreductase WRi_007260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WRi_007330 PF07650 KH domain WRi_007330 PF01926 50S ribosome-binding GTPase WRi_007350 PF02322 Cytochrome bd terminal oxidase subunit II WRi_007360 PF01654 Cytochrome bd terminal oxidase subunit I WRi_007370 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain WRi_007370 PF02777 Iron/manganese superoxide dismutases, C-terminal domain WRi_007380 PF00675 Insulinase (Peptidase family M16) WRi_007380 PF05193 Peptidase M16 inactive domain WRi_007400 PF01702 Queuine tRNA-ribosyltransferase WRi_007440 PF00072 Response regulator receiver domain WRi_007440 PF00486 Transcriptional regulatory protein, C terminal WRi_007450 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus WRi_007450 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus WRi_007460 PF04608 Phosphatidylglycerophosphatase A WRi_007490 PF13085 2Fe-2S iron-sulfur cluster binding domain WRi_007500 PF02130 Uncharacterized protein family UPF0054 WRi_007520 PF00091 Tubulin/FtsZ family, GTPase domain WRi_007520 PF12327 FtsZ family, C-terminal domain WRi_007540 PF13335 Magnesium chelatase, subunit ChlI C-terminal WRi_007540 PF01078 Magnesium chelatase, subunit ChlI WRi_007670 PF00886 Ribosomal protein S16 WRi_007680 PF00348 Polyprenyl synthetase WRi_007690 PF01025 GrpE WRi_007700 PF00579 tRNA synthetases class I (W and Y) WRi_007720 PF00034 Cytochrome c WRi_007800 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WRi_007800 PF03129 Anticodon binding domain WRi_007810 PF01648 4'-phosphopantetheinyl transferase superfamily WRi_007820 PF00361 Proton-conducting membrane transporter WRi_007820 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WRi_007820 PF13244 Domain of unknown function (DUF4040) WRi_007860 PF01300 Telomere recombination WRi_007900 PF00270 DEAD/DEAH box helicase WRi_007900 PF00271 Helicase conserved C-terminal domain WRi_007900 PF17191 RecG wedge domain WRi_007980 PF01145 SPFH domain / Band 7 family WRi_007990 PF01145 SPFH domain / Band 7 family WRi_008000 PF13180 PDZ domain WRi_008060 PF02151 UvrB/uvrC motif WRi_008060 PF04851 Type III restriction enzyme, res subunit WRi_008060 PF17757 UvrB interaction domain WRi_008060 PF12344 Ultra-violet resistance protein B WRi_008060 PF00271 Helicase conserved C-terminal domain WRi_008100 PF03918 Cytochrome C biogenesis protein WRi_008120 PF00111 2Fe-2S iron-sulfur cluster binding domain WRi_008130 PF08245 Mur ligase middle domain WRi_008190 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WRi_008200 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WRi_008210 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WRi_008220 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WRi_008230 PF03135 CagE, TrbE, VirB family, component of type IV transporter system WRi_008250 PF01921 tRNA synthetases class I (K) WRi_008260 PF01411 tRNA synthetases class II (A) WRi_008260 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WRi_008260 PF02272 DHHA1 domain WRi_008280 PF01632 Ribosomal protein L35 WRi_008290 PF00453 Ribosomal protein L20 WRi_008300 PF02911 Formyl transferase, C-terminal domain WRi_008300 PF00551 Formyl transferase WRi_008310 PF01808 AICARFT/IMPCHase bienzyme WRi_008310 PF02142 MGS-like domain WRi_008330 PF01676 Metalloenzyme superfamily WRi_008330 PF06415 BPG-independent PGAM N-terminus (iPGM_N) WRi_008340 PF00698 Acyl transferase domain WRi_008350 PF01197 Ribosomal protein L31 WRi_008360 PF01513 ATP-NAD kinase WRi_008390 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain WRi_008390 PF00013 KH domain WRi_008390 PF01138 3' exoribonuclease family, domain 1 WRi_008390 PF03725 3' exoribonuclease family, domain 2 WRi_008390 PF00575 S1 RNA binding domain WRi_008400 PF00312 Ribosomal protein S15 WRi_008410 PF01509 TruB family pseudouridylate synthase (N terminal domain) WRi_008410 PF16198 tRNA pseudouridylate synthase B C-terminal domain WRi_008480 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WRi_008480 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WRi_008500 PF10502 Signal peptidase, peptidase S26 WRi_008510 PF00012 Hsp70 protein WRi_008520 PF07743 HSCB C-terminal oligomerisation domain WRi_008530 PF01521 Iron-sulphur cluster biosynthesis WRi_008540 PF01592 NifU-like N terminal domain WRi_008550 PF00448 SRP54-type protein, GTPase domain WRi_008550 PF02881 SRP54-type protein, helical bundle domain WRi_008560 PF18073 Rubredoxin metal binding domain WRi_008610 PF00186 Dihydrofolate reductase WRi_008620 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) WRi_008620 PF00809 Pterin binding enzyme WRi_008640 PF03070 TENA/THI-4/PQQC family WRi_008660 PF00085 Thioredoxin WRi_008720 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain WRi_008720 PF02769 AIR synthase related protein, C-terminal domain WRi_008720 PF00586 AIR synthase related protein, N-terminal domain WRi_008740 PF17755 UvrA DNA-binding domain WRi_008740 PF17760 UvrA interaction domain WRi_008770 PF02875 Mur ligase family, glutamate ligase domain WRi_008770 PF08245 Mur ligase middle domain WRi_008780 PF01053 Cys/Met metabolism PLP-dependent enzyme WRi_008800 PF00012 Hsp70 protein WRi_008810 PF00575 S1 RNA binding domain WRi_008810 PF12111 Polyribonucleotide phosphorylase C terminal WRi_008810 PF10150 Ribonuclease E/G family WRi_008820 PF00471 Ribosomal protein L33 WRi_008840 PF01297 Zinc-uptake complex component A periplasmic WRi_008850 PF00005 ABC transporter WRi_008860 PF03109 ABC1 family WRi_008880 PF08240 Alcohol dehydrogenase GroES-like domain WRi_008880 PF00107 Zinc-binding dehydrogenase WRi_008900 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 WRi_008910 PF01027 Inhibitor of apoptosis-promoting Bax1 WRi_008920 PF00588 SpoU rRNA Methylase family WRi_008920 PF08032 RNA 2'-O ribose methyltransferase substrate binding WRi_008940 PF01118 Semialdehyde dehydrogenase, NAD binding domain WRi_008940 PF02774 Semialdehyde dehydrogenase, dimerisation domain WRi_008970 PF13520 Amino acid permease WRi_008990 PF00696 Amino acid kinase family WRi_008990 PF01842 ACT domain WRi_008990 PF13840 ACT domain WRi_009090 PF13361 UvrD-like helicase C-terminal domain WRi_009090 PF00580 UvrD/REP helicase N-terminal domain WRi_009110 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 WRi_009120 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WRi_009130 PF00361 Proton-conducting membrane transporter WRi_009130 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WRi_009140 PF00361 Proton-conducting membrane transporter WRi_009150 PF00361 Proton-conducting membrane transporter WRi_009160 PF03099 Biotin/lipoate A/B protein ligase family WRi_009160 PF08279 HTH domain WRi_009160 PF02237 Biotin protein ligase C terminal domain WRi_009180 PF03100 CcmE WRi_009240 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit WRi_009240 PF10531 SLBB domain WRi_009240 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region WRi_009270 PF00707 Translation initiation factor IF-3, C-terminal domain WRi_009270 PF05198 Translation initiation factor IF-3, N-terminal domain WRi_009280 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WRi_009280 PF03129 Anticodon binding domain WRi_009280 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WRi_009290 PF12838 4Fe-4S dicluster domain WRi_009300 PF12631 MnmE helical domain WRi_009300 PF01926 50S ribosome-binding GTPase WRi_009300 PF10396 GTP-binding protein TrmE N-terminus WRi_009320 PF07992 Pyridine nucleotide-disulphide oxidoreductase WRi_009330 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III WRi_009330 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal WRi_009340 PF02504 Fatty acid synthesis protein WRi_009350 PF01783 Ribosomal L32p protein family WRi_009360 PF02405 Permease MlaE WRi_009370 PF00005 ABC transporter WRi_009400 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase WRi_009400 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain WRi_009400 PF13288 DXP reductoisomerase C-terminal domain WRi_009430 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WRi_009450 PF00266 Aminotransferase class-V WRi_009460 PF01523 Putative modulator of DNA gyrase WRi_009520 PF00476 DNA polymerase family A WRi_009520 PF01367 5'-3' exonuclease, C-terminal SAM fold WRi_009520 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain WRi_009590 PF01321 Creatinase/Prolidase N-terminal domain WRi_009590 PF00557 Metallopeptidase family M24 WRi_009600 PF13932 GidA associated domain WRi_009600 PF01134 Glucose inhibited division protein A WRi_009620 PF03023 Lipid II flippase MurJ WRi_009700 PF04860 Phage portal protein WRi_009720 PF03099 Biotin/lipoate A/B protein ligase family WRi_009730 PF17676 LD-carboxypeptidase C-terminal domain WRi_009730 PF02016 LD-carboxypeptidase N-terminal domain WRi_009760 PF00528 Binding-protein-dependent transport system inner membrane component WRi_009770 PF01245 Ribosomal protein L19 WRi_009780 PF01746 tRNA (Guanine-1)-methyltransferase WRi_009790 PF01259 SAICAR synthetase WRi_009800 PF00586 AIR synthase related protein, N-terminal domain WRi_009800 PF02769 AIR synthase related protein, C-terminal domain WRi_009830 PF03471 Transporter associated domain WRi_009830 PF00571 CBS domain WRi_009840 PF01208 Uroporphyrinogen decarboxylase (URO-D) WRi_009870 PF00285 Citrate synthase, C-terminal domain WRi_009880 PF01649 Ribosomal protein S20 WRi_009900 PF02899 Phage integrase, N-terminal SAM-like domain WRi_009900 PF00589 Phage integrase family WRi_009930 PF01594 AI-2E family transporter WRi_009950 PF02542 YgbB family WRi_009950 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase WRi_009960 PF02222 ATP-grasp domain WRi_009960 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain WRi_009970 PF04379 ApaG domain WRi_009990 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WRi_010060 PF00239 Resolvase, N terminal domain WRi_010060 PF02796 Helix-turn-helix domain of resolvase WRi_010280 PF00023 Ankyrin repeat WRi_010300 PF18755 Restriction Enzyme Adenine Methylase Associated WRi_010300 PF01555 DNA methylase WRi_010330 PF01348 Type II intron maturase WRi_010330 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WRi_010380 PF00271 Helicase conserved C-terminal domain WRi_010380 PF00176 SNF2 family N-terminal domain WRi_010380 PF12419 SNF2 Helicase protein WRi_010390 PF14602 Hexapeptide repeat of succinyl-transferase WRi_010390 PF12804 MobA-like NTP transferase domain WRi_010390 PF00132 Bacterial transferase hexapeptide (six repeats) WRi_010400 PF16363 GDP-mannose 4,6 dehydratase WRi_010440 PF00664 ABC transporter transmembrane region WRi_010440 PF00005 ABC transporter WRi_010450 PF01212 Beta-eliminating lyase WRi_010460 PF01212 Beta-eliminating lyase WRi_010480 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain WRi_010480 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain WRi_010480 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain WRi_010490 PF00892 EamA-like transporter family WRi_010530 PF04002 RadC-like JAB domain WRi_010540 PF01381 Helix-turn-helix WRi_010570 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WRi_010590 PF00528 Binding-protein-dependent transport system inner membrane component WRi_010610 PF01396 Topoisomerase DNA binding C4 zinc finger WRi_010610 PF13368 Topoisomerase C-terminal repeat WRi_010610 PF01751 Toprim domain WRi_010610 PF01131 DNA topoisomerase WRi_010650 PF00464 Serine hydroxymethyltransferase WRi_010700 PF07690 Major Facilitator Superfamily WRi_010760 PF01545 Cation efflux family WRi_010780 PF02660 Glycerol-3-phosphate acyltransferase WRi_010790 PF01235 Sodium:alanine symporter family WRi_010800 PF01235 Sodium:alanine symporter family WRi_010810 PF01066 CDP-alcohol phosphatidyltransferase WRi_010820 PF02666 Phosphatidylserine decarboxylase WRi_010830 PF00154 recA bacterial DNA recombination protein WRi_010880 PF00684 DnaJ central domain WRi_010880 PF01556 DnaJ C terminal domain WRi_010880 PF00226 DnaJ domain WRi_010890 PF08245 Mur ligase middle domain WRi_010890 PF02875 Mur ligase family, glutamate ligase domain WRi_010910 PF03364 Polyketide cyclase / dehydrase and lipid transport WRi_010920 PF13462 Thioredoxin WRi_010970 PF12169 DNA polymerase III subunits gamma and tau domain III WRi_010980 PF02575 YbaB/EbfC DNA-binding family WRi_010990 PF13505 Outer membrane protein beta-barrel domain WRi_011000 PF00140 Sigma-70 factor, region 1.2 WRi_011000 PF04542 Sigma-70 region 2 WRi_011000 PF04545 Sigma-70, region 4 WRi_011020 PF00712 DNA polymerase III beta subunit, N-terminal domain WRi_011020 PF02767 DNA polymerase III beta subunit, central domain WRi_011020 PF02768 DNA polymerase III beta subunit, C-terminal domain WRi_011040 PF01416 tRNA pseudouridine synthase WRi_011060 PF00033 Cytochrome b/b6/petB WRi_011060 PF02167 Cytochrome C1 family WRi_011060 PF00032 Cytochrome b(C-terminal)/b6/petD WRi_011070 PF00032 Cytochrome b(C-terminal)/b6/petD WRi_011070 PF00033 Cytochrome b/b6/petB WRi_011080 PF00226 DnaJ domain WRi_011080 PF00684 DnaJ central domain WRi_011080 PF01556 DnaJ C terminal domain WRi_011100 PF00684 DnaJ central domain WRi_011100 PF01556 DnaJ C terminal domain WRi_011100 PF00226 DnaJ domain WRi_011120 PF03129 Anticodon binding domain WRi_011120 PF13393 Histidyl-tRNA synthetase WRi_011130 PF01975 Survival protein SurE WRi_011140 PF02881 SRP54-type protein, helical bundle domain WRi_011140 PF00448 SRP54-type protein, GTPase domain WRi_011140 PF02978 Signal peptide binding domain WRi_011160 PF07992 Pyridine nucleotide-disulphide oxidoreductase WRi_011170 PF07977 FabA-like domain WRi_011190 PF01103 Surface antigen WRi_011190 PF07244 Surface antigen variable number repeat WRi_011200 PF02163 Peptidase family M50 WRi_011200 PF17820 PDZ domain WRi_011230 PF00216 Bacterial DNA-binding protein WRi_011240 PF00575 S1 RNA binding domain WRi_011250 PF02390 Putative methyltransferase WRi_011300 PF01039 Carboxyl transferase domain WRi_011330 PF06827 Zinc finger found in FPG and IleRS WRi_011330 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain WRi_011330 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain WRi_011340 PF01243 Pyridoxamine 5'-phosphate oxidase WRi_011340 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region WRi_011360 PF00753 Metallo-beta-lactamase superfamily WRi_011360 PF03772 Competence protein WRi_011380 PF00849 RNA pseudouridylate synthase WRi_011390 PF01219 Prokaryotic diacylglycerol kinase WRi_011430 PF00162 Phosphoglycerate kinase WRi_011450 PF03060 Nitronate monooxygenase WRi_011480 PF03135 CagE, TrbE, VirB family, component of type IV transporter system WRi_011520 PF00364 Biotin-requiring enzyme WRi_011520 PF02817 e3 binding domain WRi_011520 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WRi_011550 PF13662 Toprim domain WRi_011550 PF02132 RecR protein WRi_011560 PF00334 Nucleoside diphosphate kinase WRi_011580 PF00762 Ferrochelatase WRi_011610 PF00227 Proteasome subunit WRi_011620 PF00004 ATPase family associated with various cellular activities (AAA) WRi_011620 PF07724 AAA domain (Cdc48 subfamily) WRi_011620 PF10431 C-terminal, D2-small domain, of ClpB protein WRi_011650 PF00348 Polyprenyl synthetase WRi_011660 PF00550 Phosphopantetheine attachment site WRi_011670 PF00109 Beta-ketoacyl synthase, N-terminal domain WRi_011670 PF02801 Beta-ketoacyl synthase, C-terminal domain WRi_011710 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WRi_011720 PF02511 Thymidylate synthase complementing protein WRi_011780 PF00271 Helicase conserved C-terminal domain WRi_011780 PF17764 3′ DNA-binding domain (3′BD) WRi_011780 PF18074 Primosomal protein N C-terminal domain WRi_011780 PF18319 PriA DNA helicase Cys-rich region (CRR) domain WRi_011780 PF00270 DEAD/DEAH box helicase WRi_011790 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal WRi_011790 PF00355 Rieske [2Fe-2S] domain WRi_011800 PF03989 DNA gyrase C-terminal domain, beta-propeller WRi_011800 PF00521 DNA gyrase/topoisomerase IV, subunit A WRi_011840 PF02632 BioY family WRi_011850 PF00881 Nitroreductase family WRi_011860 PF01678 Diaminopimelate epimerase WRi_011870 PF00549 CoA-ligase WRi_011870 PF02629 CoA binding domain WRi_011880 PF08442 ATP-grasp domain WRi_011880 PF00549 CoA-ligase WRi_011910 PF04452 RNA methyltransferase WRi_011940 PF01218 Coproporphyrinogen III oxidase WRi_011950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WRi_011950 PF00512 His Kinase A (phospho-acceptor) domain WRi_011950 PF08448 PAS fold WRi_011950 PF13188 PAS domain WRi_011950 PF00072 Response regulator receiver domain WRi_011960 PF13614 AAA domain WRi_011970 PF02195 ParB-like nuclease domain WRi_011970 PF17762 HTH domain found in ParB protein WRi_012000 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WRi_012010 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WRi_012030 PF01050 Mannose-6-phosphate isomerase WRi_012030 PF00483 Nucleotidyl transferase WRi_012040 PF12704 MacB-like periplasmic core domain WRi_012040 PF02687 FtsX-like permease family WRi_012070 PF00231 ATP synthase WRi_012080 PF01523 Putative modulator of DNA gyrase WRi_012090 PF00313 'Cold-shock' DNA-binding domain WRi_012100 PF00270 DEAD/DEAH box helicase WRi_012100 PF00271 Helicase conserved C-terminal domain WRi_012110 PF17871 AAA lid domain WRi_012110 PF07724 AAA domain (Cdc48 subfamily) WRi_012110 PF00004 ATPase family associated with various cellular activities (AAA) WRi_012110 PF02861 Clp amino terminal domain, pathogenicity island component WRi_012110 PF10431 C-terminal, D2-small domain, of ClpB protein WRi_012130 PF01791 DeoC/LacD family aldolase WRi_012150 PF01180 Dihydroorotate dehydrogenase WRi_012160 PF00035 Double-stranded RNA binding motif WRi_012160 PF14622 Ribonuclease-III-like WRi_012180 PF13091 PLD-like domain WRi_012220 PF00210 Ferritin-like domain WRi_012230 PF02104 SURF1 family WRi_012240 PF00999 Sodium/hydrogen exchanger family WRi_012240 PF02254 TrkA-N domain WRi_012260 PF02223 Thymidylate kinase WRi_012280 PF06480 FtsH Extracellular WRi_012280 PF17862 AAA+ lid domain WRi_012280 PF00004 ATPase family associated with various cellular activities (AAA) WRi_012280 PF01434 Peptidase family M41 WRi_012290 PF01171 PP-loop family WRi_012300 PF00691 OmpA family WRi_012350 PF00719 Inorganic pyrophosphatase WRi_012370 PF09312 SurA N-terminal domain WRi_012370 PF00639 PPIC-type PPIASE domain WRi_012380 PF07992 Pyridine nucleotide-disulphide oxidoreductase WRi_012430 PF00905 Penicillin binding protein transpeptidase domain WRi_012430 PF03717 Penicillin-binding Protein dimerisation domain WRi_012440 PF02401 LytB protein WRi_012700 PF01258 Prokaryotic dksA/traR C4-type zinc finger WRi_012740 PF01926 50S ribosome-binding GTPase WRi_012740 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal WRi_012770 PF00953 Glycosyl transferase family 4 WRi_012780 PF01351 Ribonuclease HII WRi_012820 PF00361 Proton-conducting membrane transporter WRi_012830 PF01098 Cell cycle protein WRi_012840 PF00156 Phosphoribosyl transferase domain WRi_012840 PF13537 Glutamine amidotransferase domain WRi_012850 PF02245 Methylpurine-DNA glycosylase (MPG) WRi_012860 PF05496 Holliday junction DNA helicase RuvB P-loop domain WRi_012860 PF05491 RuvB C-terminal winged helix domain WRi_012860 PF17864 RuvB AAA lid domain WRi_012870 PF01330 RuvA N terminal domain WRi_012870 PF07499 RuvA, C-terminal domain WRi_012890 PF00579 tRNA synthetases class I (W and Y) WRi_012920 PF00293 NUDIX domain WRi_012930 PF01026 TatD related DNase WRi_012940 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain WRi_012940 PF00056 lactate/malate dehydrogenase, NAD binding domain WRi_012950 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit WRi_012960 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WRi_012970 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 WRi_012980 PF01230 HIT domain WRi_013010 PF08245 Mur ligase middle domain WRi_013010 PF01225 Mur ligase family, catalytic domain WRi_013010 PF02875 Mur ligase family, glutamate ligase domain WRi_013020 PF08338 Domain of unknown function (DUF1731) WRi_013020 PF01370 NAD dependent epimerase/dehydratase family WRi_013040 PF00183 Hsp90 protein WRi_013060 PF00155 Aminotransferase class I and II WRi_013080 PF08207 Elongation factor P (EF-P) KOW-like domain WRi_013080 PF01132 Elongation factor P (EF-P) OB domain WRi_013080 PF09285 Elongation factor P, C-terminal WRi_013090 PF01782 RimM N-terminal domain WRi_013090 PF05239 PRC-barrel domain WRi_013100 PF00202 Aminotransferase class-III WRi_013110 PF00989 PAS fold WRi_013110 PF00512 His Kinase A (phospho-acceptor) domain WRi_013110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WRi_013120 PF00578 AhpC/TSA family WRi_013130 PF02463 RecF/RecN/SMC N terminal domain WRi_013200 PF02142 MGS-like domain WRi_013200 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WRi_013200 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WRi_013260 PF04546 Sigma-70, non-essential region WRi_013260 PF03979 Sigma-70 factor, region 1.1 WRi_013260 PF00140 Sigma-70 factor, region 1.2 WRi_013260 PF04542 Sigma-70 region 2 WRi_013260 PF04545 Sigma-70, region 4 WRi_013260 PF04539 Sigma-70 region 3 WRi_013270 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WRi_013290 PF00361 Proton-conducting membrane transporter WRi_013290 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WRi_013290 PF13244 Domain of unknown function (DUF4040) WRi_013300 PF03334 Na+/H+ antiporter subunit WRi_013320 PF01192 RNA polymerase Rpb6 WRi_013340 PF00731 AIR carboxylase WRi_013350 PF01119 DNA mismatch repair protein, C-terminal domain WRi_013350 PF08676 MutL C terminal dimerisation domain WRi_013360 PF16078 2-oxoglutarate dehydrogenase N-terminus WRi_013360 PF00676 Dehydrogenase E1 component WRi_013360 PF16870 2-oxoglutarate dehydrogenase C-terminal WRi_013360 PF02779 Transketolase, pyrimidine binding domain WRi_013410 PF02661 Fic/DOC family WRi_013410 PF13784 Fic/DOC family N-terminal WRi_013420 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase WRi_013460 PF01040 UbiA prenyltransferase family WRi_013470 PF02033 Ribosome-binding factor A WRi_013480 PF11987 Translation-initiation factor 2 WRi_013480 PF04760 Translation initiation factor IF-2, N-terminal region WRi_013480 PF00009 Elongation factor Tu GTP binding domain WRi_013490 PF08529 NusA N-terminal domain WRi_013490 PF00575 S1 RNA binding domain WRi_013490 PF13184 NusA-like KH domain WRi_013500 PF00873 AcrB/AcrD/AcrF family WRi_013520 PF00120 Glutamine synthetase, catalytic domain