locus-tag class description WS0000 PF11638 DnaA N-terminal domain WS0000 PF08299 Bacterial dnaA protein helix-turn-helix WS0000 PF00308 Bacterial dnaA protein WS0001 PF02767 DNA polymerase III beta subunit, central domain WS0001 PF02768 DNA polymerase III beta subunit, C-terminal domain WS0001 PF00712 DNA polymerase III beta subunit, N-terminal domain WS0002 PF01751 Toprim domain WS0002 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0002 PF00204 DNA gyrase B WS0002 PF00986 DNA gyrase B subunit, carboxyl terminus WS0003 PF14489 QueF-like protein WS0004 PF02660 Glycerol-3-phosphate acyltransferase WS0006 PF02028 BCCT, betaine/carnitine/choline family transporter WS0007 PF00582 Universal stress protein family WS0009 PF13442 Cytochrome C oxidase, cbb3-type, subunit III WS0011 PF00486 Transcriptional regulatory protein, C terminal WS0011 PF00072 Response regulator receiver domain WS0012 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0012 PF00512 His Kinase A (phospho-acceptor) domain WS0013 PF07556 Protein of unknown function (DUF1538) WS0014 PF00571 CBS domain WS0016 PF00512 His Kinase A (phospho-acceptor) domain WS0016 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0017 PF17785 PUA-like domain WS0017 PF10672 S-adenosylmethionine-dependent methyltransferase WS0018 PF02253 Phospholipase A1 WS0021 PF01909 Nucleotidyltransferase domain WS0021 PF01966 HD domain WS0021 PF08335 GlnD PII-uridylyltransferase WS0021 PF01842 ACT domain WS0022 PF01380 SIS domain WS0023 PF00990 Diguanylate cyclase, GGDEF domain WS0023 PF00072 Response regulator receiver domain WS0024 PF00266 Aminotransferase class-V WS0025 PF01370 NAD dependent epimerase/dehydratase family WS0026 PF02634 FdhD/NarQ family WS0028 PF13247 4Fe-4S dicluster domain WS0029 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS0029 PF00384 Molybdopterin oxidoreductase WS0029 PF01568 Molydopterin dinucleotide binding domain WS0033 PF00583 Acetyltransferase (GNAT) family WS0036 PF02719 Polysaccharide biosynthesis protein WS0037 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family WS0039 PF02397 Bacterial sugar transferase WS0040 PF13477 Glycosyl transferase 4-like WS0040 PF00534 Glycosyl transferases group 1 WS0042 PF13537 Glutamine amidotransferase domain WS0042 PF00733 Asparagine synthase WS0043 PF02516 Oligosaccharyl transferase STT3 subunit WS0043 PF18527 STT3/PglB C-terminal beta-barrel domain WS0044 PF13439 Glycosyltransferase Family 4 WS0044 PF00534 Glycosyl transferases group 1 WS0046 PF00733 Asparagine synthase WS0046 PF13537 Glutamine amidotransferase domain WS0050 PF00534 Glycosyl transferases group 1 WS0050 PF13439 Glycosyltransferase Family 4 WS0052 PF00664 ABC transporter transmembrane region WS0052 PF00005 ABC transporter WS0054 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain WS0054 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain WS0054 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain WS0055 PF00486 Transcriptional regulatory protein, C terminal WS0055 PF00072 Response regulator receiver domain WS0058 PF07724 AAA domain (Cdc48 subfamily) WS0058 PF10431 C-terminal, D2-small domain, of ClpB protein WS0058 PF06689 ClpX C4-type zinc finger WS0059 PF00132 Bacterial transferase hexapeptide (six repeats) WS0059 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 WS0060 PF07977 FabA-like domain WS0061 PF02677 Epoxyqueuosine reductase QueH WS0062 PF04055 Radical SAM superfamily WS0064 PF00977 Histidine biosynthesis protein WS0065 PF00398 Ribosomal RNA adenine dimethylase WS0066 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain WS0066 PF17770 Ribonuclease J C-terminal domain WS0066 PF00753 Metallo-beta-lactamase superfamily WS0067 PF00571 CBS domain WS0067 PF01380 SIS domain WS0068 PF10398 Protein of unknown function (DUF2443) WS0070 PF00583 Acetyltransferase (GNAT) family WS0071 PF01966 HD domain WS0071 PF00013 KH domain WS0071 PF12072 Domain of unknown function (DUF3552) WS0073 PF00578 AhpC/TSA family WS0074 PF00448 SRP54-type protein, GTPase domain WS0075 PF18073 Rubredoxin metal binding domain WS0077 PF00072 Response regulator receiver domain WS0077 PF00486 Transcriptional regulatory protein, C terminal WS0078 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0078 PF07689 KaiB domain WS0078 PF00512 His Kinase A (phospho-acceptor) domain WS0081 PF04461 Protein of unknown function (DUF520) WS0084 PF01336 OB-fold nucleic acid binding domain WS0084 PF00152 tRNA synthetases class II (D, K and N) WS0085 PF00464 Serine hydroxymethyltransferase WS0088 PF00425 chorismate binding enzyme WS0088 PF04715 Anthranilate synthase component I, N terminal region WS0090 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase WS0090 PF01502 Phosphoribosyl-AMP cyclohydrolase WS0092 PF01063 Amino-transferase class IV WS0093 PF08338 Domain of unknown function (DUF1731) WS0093 PF01370 NAD dependent epimerase/dehydratase family WS0094 PF00672 HAMP domain WS0094 PF02203 Tar ligand binding domain homologue WS0094 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0095 PF01584 CheW-like domain WS0096 PF17854 FtsK alpha domain WS0096 PF09397 Ftsk gamma domain WS0096 PF01580 FtsK/SpoIIIE family WS0101 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD WS0101 PF00132 Bacterial transferase hexapeptide (six repeats) WS0102 PF10369 Small subunit of acetolactate synthase WS0103 PF00205 Thiamine pyrophosphate enzyme, central domain WS0103 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WS0103 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain WS0104 PF02541 Ppx/GppA phosphatase family WS0105 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ WS0106 PF04166 Pyridoxal phosphate biosynthetic protein PdxA WS0108 PF00563 EAL domain WS0108 PF12792 CSS motif domain associated with EAL WS0110 PF00005 ABC transporter WS0111 PF03462 PCRF domain WS0111 PF00472 RF-1 domain WS0112 PF02569 Pantoate-beta-alanine ligase WS0113 PF06969 HemN C-terminal domain WS0113 PF04055 Radical SAM superfamily WS0114 PF12852 Cupin WS0114 PF12833 Helix-turn-helix domain WS0116 PF01568 Molydopterin dinucleotide binding domain WS0116 PF00384 Molybdopterin oxidoreductase WS0116 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS0116 PF10518 TAT (twin-arginine translocation) pathway signal sequence WS0117 PF13247 4Fe-4S dicluster domain WS0118 PF03916 Polysulphide reductase, NrfD WS0119 PF00486 Transcriptional regulatory protein, C terminal WS0119 PF00072 Response regulator receiver domain WS0120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0120 PF00512 His Kinase A (phospho-acceptor) domain WS0120 PF00989 PAS fold WS0120 PF13188 PAS domain WS0120 PF13426 PAS domain WS0121 PF03264 NapC/NirT cytochrome c family, N-terminal region WS0124 PF00890 FAD binding domain WS0124 PF14537 Cytochrome c3 WS0125 PF00563 EAL domain WS0125 PF08448 PAS fold WS0125 PF00990 Diguanylate cyclase, GGDEF domain WS0126 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS0126 PF00384 Molybdopterin oxidoreductase WS0126 PF01568 Molydopterin dinucleotide binding domain WS0128 PF02743 Cache domain WS0128 PF00672 HAMP domain WS0128 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0129 PF03553 Na+/H+ antiporter family WS0129 PF13726 Na+-H+ antiporter family WS0130 PF00920 Dehydratase family WS0131 PF13380 CoA binding domain WS0132 PF00291 Pyridoxal-phosphate dependent enzyme WS0132 PF13291 ACT domain WS0137 PF00731 AIR carboxylase WS0138 PF02540 NAD synthase WS0139 PF01969 Protein of unknown function DUF111 WS0140 PF09861 Lactate racemase N-terminal domain WS0141 PF01758 Sodium Bile acid symporter family WS0142 PF01098 Cell cycle protein WS0143 PF01479 S4 domain WS0143 PF00849 RNA pseudouridylate synthase WS0145 PF02390 Putative methyltransferase WS0146 PF00005 ABC transporter WS0150 PF07195 Flagellar hook-associated protein 2 C-terminus WS0150 PF02465 Flagellar hook-associated protein 2 N-terminus WS0151 PF02561 Flagellar protein FliS WS0156 PF02590 Predicted SPOUT methyltransferase WS0157 PF01039 Carboxyl transferase domain WS0157 PF17848 Acetyl-coA carboxylase zinc finger domain WS0160 PF00639 PPIC-type PPIASE domain WS0160 PF09312 SurA N-terminal domain WS0161 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal WS0161 PF14602 Hexapeptide repeat of succinyl-transferase WS0161 PF00132 Bacterial transferase hexapeptide (six repeats) WS0162 PF01207 Dihydrouridine synthase (Dus) WS0163 PF00258 Flavodoxin WS0163 PF00753 Metallo-beta-lactamase superfamily WS0164 PF06865 Pyrimidine/purine nucleoside phosphorylase WS0165 PF06942 GlpM protein WS0166 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain WS0167 PF03435 Saccharopine dehydrogenase NADP binding domain WS0167 PF16653 Saccharopine dehydrogenase C-terminal domain WS0168 PF00873 AcrB/AcrD/AcrF family WS0170 PF01795 MraW methylase family WS0171 PF01515 Phosphate acetyl/butaryl transferase WS0171 PF00390 Malic enzyme, N-terminal domain WS0171 PF03949 Malic enzyme, NAD binding domain WS0174 PF02464 Competence-damaged protein WS0175 PF03976 Polyphosphate kinase 2 (PPK2) WS0176 PF08264 Anticodon-binding domain of tRNA WS0176 PF00133 tRNA synthetases class I (I, L, M and V) WS0178 PF00115 Cytochrome C and Quinol oxidase polypeptide I WS0181 PF13442 Cytochrome C oxidase, cbb3-type, subunit III WS0181 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP WS0186 PF00750 tRNA synthetases class I (R) WS0186 PF05746 DALR anticodon binding domain WS0186 PF03485 Arginyl tRNA synthetase N terminal domain WS0187 PF02416 mttA/Hcf106 family WS0188 PF00625 Guanylate kinase WS0191 PF01311 Bacterial export proteins, family 1 WS0192 PF00005 ABC transporter WS0193 PF00889 Elongation factor TS WS0194 PF00318 Ribosomal protein S2 WS0196 PF00578 AhpC/TSA family WS0198 PF09335 SNARE associated Golgi protein WS0200 PF09335 SNARE associated Golgi protein WS0203 PF00860 Permease family WS0204 PF02606 Tetraacyldisaccharide-1-P 4'-kinase WS0205 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family WS0206 PF02540 NAD synthase WS0207 PF00691 OmpA family WS0207 PF05736 OprF membrane domain WS0209 PF02092 Glycyl-tRNA synthetase beta subunit WS0212 PF00512 His Kinase A (phospho-acceptor) domain WS0212 PF01627 Hpt domain WS0212 PF00072 Response regulator receiver domain WS0212 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) WS0212 PF00672 HAMP domain WS0212 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0213 PF00072 Response regulator receiver domain WS0214 PF00072 Response regulator receiver domain WS0214 PF01339 CheB methylesterase WS0217 PF01588 Putative tRNA binding domain WS0217 PF00133 tRNA synthetases class I (I, L, M and V) WS0217 PF09334 tRNA synthetases class I (M) WS0218 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain WS0219 PF00834 Ribulose-phosphate 3 epimerase family WS0220 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase WS0221 PF14579 Helix-hairpin-helix motif WS0221 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WS0221 PF02811 PHP domain WS0221 PF11490 DNA polymerase III polC-type N-terminus II WS0221 PF00929 Exonuclease WS0221 PF14480 DNA polymerase III polC-type N-terminus I WS0221 PF07733 Bacterial DNA polymerase III alpha NTPase domain WS0222 PF05175 Methyltransferase small domain WS0222 PF17827 PrmC N-terminal domain WS0223 PF16491 CAAX prenyl protease N-terminal, five membrane helices WS0223 PF01435 Peptidase family M48 WS0224 PF00117 Glutamine amidotransferase class-I WS0224 PF06418 CTP synthase N-terminus WS0225 PF01368 DHH family WS0225 PF17768 RecJ OB domain WS0225 PF02272 DHHA1 domain WS0226 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS0231 PF12327 FtsZ family, C-terminal domain WS0231 PF00091 Tubulin/FtsZ family, GTPase domain WS0232 PF02491 SHS2 domain inserted in FTSA WS0233 PF13145 PPIC-type PPIASE domain WS0234 PF00202 Aminotransferase class-III WS0237 PF00501 AMP-binding enzyme WS0237 PF13193 AMP-binding enzyme C-terminal domain WS0238 PF00696 Amino acid kinase family WS0239 PF01192 RNA polymerase Rpb6 WS0240 PF13291 ACT domain WS0240 PF02824 TGS domain WS0240 PF04607 Region found in RelA / SpoT proteins WS0241 PF00579 tRNA synthetases class I (W and Y) WS0241 PF01479 S4 domain WS0243 PF01520 N-acetylmuramoyl-L-alanine amidase WS0243 PF04122 Putative cell wall binding repeat 2 WS0245 PF02621 Menaquinone biosynthesis WS0250 PF00534 Glycosyl transferases group 1 WS0250 PF13439 Glycosyltransferase Family 4 WS0252 PF00534 Glycosyl transferases group 1 WS0254 PF01075 Glycosyltransferase family 9 (heptosyltransferase) WS0255 PF13439 Glycosyltransferase Family 4 WS0255 PF00534 Glycosyl transferases group 1 WS0256 PF00664 ABC transporter transmembrane region WS0256 PF00005 ABC transporter WS0257 PF00072 Response regulator receiver domain WS0257 PF01584 CheW-like domain WS0259 PF00460 Flagella basal body rod protein WS0259 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WS0264 PF10145 Phage-related minor tail protein WS0264 PF01551 Peptidase family M23 WS0264 PF01464 Transglycosylase SLT domain WS0266 PF15436 Plasminogen-binding protein pgbA N-terminal WS0266 PF15437 Plasminogen-binding protein pgbA C-terminal WS0267 PF02913 FAD linked oxidases, C-terminal domain WS0267 PF01565 FAD binding domain WS0269 PF01717 Cobalamin-independent synthase, Catalytic domain WS0269 PF08267 Cobalamin-independent synthase, N-terminal domain WS0271 PF03824 High-affinity nickel-transport protein WS0274 PF00749 tRNA synthetases class I (E and Q), catalytic domain WS0277 PF00005 ABC transporter WS0278 PF00497 Bacterial extracellular solute-binding proteins, family 3 WS0279 PF00497 Bacterial extracellular solute-binding proteins, family 3 WS0280 PF00528 Binding-protein-dependent transport system inner membrane component WS0283 PF17202 Single cache domain 3 WS0283 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0283 PF00672 HAMP domain WS0287 PF04454 Encapsulating protein for peroxidase WS0289 PF07715 TonB-dependent Receptor Plug Domain WS0289 PF00593 TonB dependent receptor WS0291 PF09335 SNARE associated Golgi protein WS0292 PF00691 OmpA family WS0292 PF13677 Membrane MotB of proton-channel complex MotA/MotB WS0293 PF00484 Carbonic anhydrase WS0294 PF00793 DAHP synthetase I family WS0295 PF00885 6,7-dimethyl-8-ribityllumazine synthase WS0296 PF01029 NusB family WS0297 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family WS0299 PF13286 Phosphohydrolase-associated domain WS0299 PF01966 HD domain WS0302 PF00202 Aminotransferase class-III WS0305 PF00672 HAMP domain WS0305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0305 PF00512 His Kinase A (phospho-acceptor) domain WS0305 PF13426 PAS domain WS0306 PF00072 Response regulator receiver domain WS0306 PF00486 Transcriptional regulatory protein, C terminal WS0307 PF10502 Signal peptidase, peptidase S26 WS0308 PF00118 TCP-1/cpn60 chaperonin family WS0309 PF00166 Chaperonin 10 Kd subunit WS0310 PF00155 Aminotransferase class I and II WS0311 PF00579 tRNA synthetases class I (W and Y) WS0312 PF13649 Methyltransferase domain WS0313 PF03840 Preprotein translocase SecG subunit WS0314 PF01765 Ribosome recycling factor WS0315 PF00156 Phosphoribosyl transferase domain WS0318 PF00119 ATP synthase A chain WS0323 PF03033 Glycosyltransferase family 28 N-terminal domain WS0323 PF04101 Glycosyltransferase family 28 C-terminal domain WS0324 PF02272 DHHA1 domain WS0324 PF01411 tRNA synthetases class II (A) WS0324 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WS0325 PF02545 Maf-like protein WS0327 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS0328 PF00830 Ribosomal L28 family WS0330 PF01960 ArgJ family WS0332 PF00800 Prephenate dehydratase WS0332 PF01817 Chorismate mutase type II WS0332 PF01842 ACT domain WS0333 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain WS0333 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain WS0336 PF02617 ATP-dependent Clp protease adaptor protein ClpS WS0337 PF00004 ATPase family associated with various cellular activities (AAA) WS0337 PF10431 C-terminal, D2-small domain, of ClpB protein WS0337 PF02861 Clp amino terminal domain, pathogenicity island component WS0337 PF17871 AAA lid domain WS0337 PF07724 AAA domain (Cdc48 subfamily) WS0338 PF03588 Leucyl/phenylalanyl-tRNA protein transferase WS0340 PF00483 Nucleotidyl transferase WS0342 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WS0343 PF00899 ThiF family WS0344 PF00990 Diguanylate cyclase, GGDEF domain WS0344 PF17151 Periplasmic sensor domain WS0345 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WS0345 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WS0346 PF01027 Inhibitor of apoptosis-promoting Bax1 WS0347 PF02581 Thiamine monophosphate synthase WS0347 PF17792 ThiD2 family WS0348 PF01842 ACT domain WS0348 PF02153 Prephenate dehydrogenase WS0350 PF07244 Surface antigen variable number repeat WS0350 PF01103 Surface antigen WS0351 PF04055 Radical SAM superfamily WS0352 PF05193 Peptidase M16 inactive domain WS0353 PF00271 Helicase conserved C-terminal domain WS0353 PF04851 Type III restriction enzyme, res subunit WS0354 PF00772 DnaB-like helicase N terminal domain WS0354 PF03796 DnaB-like helicase C terminal domain WS0361 PF02592 Putative vitamin uptake transporter WS0363 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD WS0365 PF03989 DNA gyrase C-terminal domain, beta-propeller WS0365 PF00521 DNA gyrase/topoisomerase IV, subunit A WS0367 PF00158 Sigma-54 interaction domain WS0367 PF02954 Bacterial regulatory protein, Fis family WS0367 PF00072 Response regulator receiver domain WS0368 PF01118 Semialdehyde dehydrogenase, NAD binding domain WS0368 PF02774 Semialdehyde dehydrogenase, dimerisation domain WS0370 PF01208 Uroporphyrinogen decarboxylase (URO-D) WS0372 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component WS0373 PF03480 Bacterial extracellular solute-binding protein, family 7 WS0374 PF04055 Radical SAM superfamily WS0376 PF00072 Response regulator receiver domain WS0376 PF00486 Transcriptional regulatory protein, C terminal WS0378 PF00989 PAS fold WS0378 PF00512 His Kinase A (phospho-acceptor) domain WS0378 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0380 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase WS0380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WS0381 PF00037 4Fe-4S binding domain WS0381 PF13247 4Fe-4S dicluster domain WS0382 PF03916 Polysulphide reductase, NrfD WS0383 PF01578 Cytochrome C assembly protein WS0383 PF05140 ResB-like family WS0390 PF00005 ABC transporter WS0394 PF03473 MOSC domain WS0394 PF03475 3-alpha domain WS0398 PF00563 EAL domain WS0398 PF00990 Diguanylate cyclase, GGDEF domain WS0398 PF03707 Bacterial signalling protein N terminal repeat WS0399 PF01243 Pyridoxamine 5'-phosphate oxidase WS0400 PF00375 Sodium:dicarboxylate symporter family WS0402 PF00155 Aminotransferase class I and II WS0403 PF07690 Major Facilitator Superfamily WS0407 PF03109 ABC1 family WS0409 PF00543 Nitrogen regulatory protein P-II WS0410 PF00909 Ammonium Transporter Family WS0411 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WS0411 PF00529 HlyD membrane-fusion protein of T1SS WS0412 PF00873 AcrB/AcrD/AcrF family WS0414 PF00990 Diguanylate cyclase, GGDEF domain WS0414 PF00072 Response regulator receiver domain WS0415 PF00072 Response regulator receiver domain WS0415 PF00486 Transcriptional regulatory protein, C terminal WS0416 PF00206 Lyase WS0416 PF10397 Adenylosuccinate lyase C-terminus WS0417 PF00849 RNA pseudouridylate synthase WS0420 PF00268 Ribonucleotide reductase, small chain WS0421 PF00403 Heavy-metal-associated domain WS0424 PF00121 Triosephosphate isomerase WS0430 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain WS0430 PF00476 DNA polymerase family A WS0430 PF01367 5'-3' exonuclease, C-terminal SAM fold WS0432 PF00672 HAMP domain WS0432 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0432 PF17202 Single cache domain 3 WS0435 PF01230 HIT domain WS0436 PF01225 Mur ligase family, catalytic domain WS0436 PF08245 Mur ligase middle domain WS0436 PF02875 Mur ligase family, glutamate ligase domain WS0437 PF00708 Acylphosphatase WS0438 PF01820 D-ala D-ala ligase N-terminus WS0438 PF07478 D-ala D-ala ligase C-terminus WS0439 PF18381 YcaO cyclodehydratase C-terminal domain WS0439 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding WS0440 PF01330 RuvA N terminal domain WS0440 PF07499 RuvA, C-terminal domain WS0442 PF03023 Lipid II flippase MurJ WS0443 PF01406 tRNA synthetases class I (C) catalytic domain WS0444 PF01197 Ribosomal protein L31 WS0445 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases WS0446 PF00588 SpoU rRNA Methylase family WS0446 PF08032 RNA 2'-O ribose methyltransferase substrate binding WS0449 PF00155 Aminotransferase class I and II WS0450 PF03447 Homoserine dehydrogenase, NAD binding domain WS0450 PF00742 Homoserine dehydrogenase WS0450 PF01842 ACT domain WS0451 PF02021 Uncharacterised protein family UPF0102 WS0452 PF00085 Thioredoxin WS0454 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS0455 PF01113 Dihydrodipicolinate reductase, N-terminus WS0455 PF05173 Dihydrodipicolinate reductase, C-terminus WS0456 PF00156 Phosphoribosyl transferase domain WS0457 PF04055 Radical SAM superfamily WS0457 PF16199 Radical_SAM C-terminal domain WS0462 PF02357 Transcription termination factor nusG WS0463 PF03946 Ribosomal protein L11, N-terminal domain WS0463 PF00298 Ribosomal protein L11, RNA binding domain WS0464 PF00687 Ribosomal protein L1p/L10e family WS0465 PF00466 Ribosomal protein L10 WS0466 PF16320 Ribosomal protein L7/L12 dimerisation domain WS0466 PF00542 Ribosomal protein L7/L12 C-terminal domain WS0467 PF00623 RNA polymerase Rpb1, domain 2 WS0467 PF04983 RNA polymerase Rpb1, domain 3 WS0467 PF05000 RNA polymerase Rpb1, domain 4 WS0467 PF04998 RNA polymerase Rpb1, domain 5 WS0467 PF04563 RNA polymerase beta subunit WS0467 PF04561 RNA polymerase Rpb2, domain 2 WS0467 PF04565 RNA polymerase Rpb2, domain 3 WS0467 PF04560 RNA polymerase Rpb2, domain 7 WS0467 PF10385 RNA polymerase beta subunit external 1 domain WS0467 PF04997 RNA polymerase Rpb1, domain 1 WS0467 PF00562 RNA polymerase Rpb2, domain 6 WS0468 PF00164 Ribosomal protein S12/S23 WS0469 PF00177 Ribosomal protein S7p/S5e WS0470 PF03144 Elongation factor Tu domain 2 WS0470 PF00009 Elongation factor Tu GTP binding domain WS0470 PF14492 Elongation Factor G, domain II WS0470 PF00679 Elongation factor G C-terminus WS0470 PF03764 Elongation factor G, domain IV WS0471 PF02811 PHP domain WS0472 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 WS0473 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WS0474 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit WS0475 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit WS0477 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS0477 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster WS0477 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region WS0478 PF12838 4Fe-4S dicluster domain WS0478 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WS0478 PF01568 Molydopterin dinucleotide binding domain WS0478 PF00384 Molybdopterin oxidoreductase WS0478 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS0479 PF01568 Molydopterin dinucleotide binding domain WS0479 PF00384 Molybdopterin oxidoreductase WS0479 PF12838 4Fe-4S dicluster domain WS0479 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS0479 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WS0481 PF00146 NADH dehydrogenase WS0482 PF12838 4Fe-4S dicluster domain WS0483 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 WS0484 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WS0485 PF00361 Proton-conducting membrane transporter WS0485 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WS0487 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus WS0487 PF00361 Proton-conducting membrane transporter WS0488 PF00361 Proton-conducting membrane transporter WS0494 PF00012 Hsp70 protein WS0495 PF01025 GrpE WS0499 PF00216 Bacterial DNA-binding protein WS0502 PF01042 Endoribonuclease L-PSP WS0503 PF00829 Ribosomal prokaryotic L21 protein WS0504 PF01016 Ribosomal L27 protein WS0505 PF01018 GTP1/OBG WS0505 PF01926 50S ribosome-binding GTPase WS0506 PF00696 Amino acid kinase family WS0507 PF02911 Formyl transferase, C-terminal domain WS0507 PF00551 Formyl transferase WS0508 PF02237 Biotin protein ligase C terminal domain WS0508 PF08279 HTH domain WS0508 PF03099 Biotin/lipoate A/B protein ligase family WS0509 PF13614 AAA domain WS0510 PF17762 HTH domain found in ParB protein WS0510 PF02195 ParB-like nuclease domain WS0512 PF00430 ATP synthase B/B' CF(0) WS0513 PF00213 ATP synthase delta (OSCP) subunit WS0514 PF02874 ATP synthase alpha/beta family, beta-barrel domain WS0514 PF00306 ATP synthase alpha/beta chain, C terminal domain WS0514 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WS0515 PF00231 ATP synthase WS0516 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WS0516 PF02874 ATP synthase alpha/beta family, beta-barrel domain WS0517 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain WS0518 PF01618 MotA/TolQ/ExbB proton channel family WS0519 PF02472 Biopolymer transport protein ExbD/TolR WS0521 PF04052 TolB amino-terminal domain WS0525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WS0526 PF02954 Bacterial regulatory protein, Fis family WS0526 PF00158 Sigma-54 interaction domain WS0526 PF00072 Response regulator receiver domain WS0527 PF00698 Acyl transferase domain WS0528 PF01048 Phosphorylase superfamily WS0530 PF00437 Type II/IV secretion system protein WS0531 PF08334 Type II secretion system (T2SS), protein G WS0531 PF07963 Prokaryotic N-terminal methylation motif WS0532 PF08334 Type II secretion system (T2SS), protein G WS0532 PF07963 Prokaryotic N-terminal methylation motif WS0533 PF00437 Type II/IV secretion system protein WS0541 PF00263 Bacterial type II and III secretion system protein WS0541 PF03958 Bacterial type II/III secretion system short domain WS0543 PF00437 Type II/IV secretion system protein WS0545 PF01475 Ferric uptake regulator family WS0547 PF00448 SRP54-type protein, GTPase domain WS0547 PF02881 SRP54-type protein, helical bundle domain WS0547 PF02978 Signal peptide binding domain WS0548 PF00886 Ribosomal protein S16 WS0550 PF01782 RimM N-terminal domain WS0551 PF01746 tRNA (Guanine-1)-methyltransferase WS0552 PF01245 Ribosomal protein L19 WS0553 PF06426 Serine acetyltransferase, N-terminal WS0553 PF00132 Bacterial transferase hexapeptide (six repeats) WS0554 PF17944 Arginine decarboxylase C-terminal helical extension WS0554 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain WS0554 PF17810 Arginine decarboxylase helical bundle domain WS0555 PF02130 Uncharacterized protein family UPF0054 WS0557 PF03167 Uracil DNA glycosylase superfamily WS0558 PF02686 Glu-tRNAGln amidotransferase C subunit WS0559 PF00330 Aconitase family (aconitate hydratase) WS0560 PF00543 Nitrogen regulatory protein P-II WS0561 PF02779 Transketolase, pyrimidine binding domain WS0561 PF02780 Transketolase, C-terminal domain WS0561 PF00456 Transketolase, thiamine diphosphate binding domain WS0565 PF00364 Biotin-requiring enzyme WS0565 PF02436 Conserved carboxylase domain WS0565 PF00682 HMGL-like WS0566 PF02601 Exonuclease VII, large subunit WS0566 PF13742 OB-fold nucleic acid binding domain WS0567 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WS0568 PF00528 Binding-protein-dependent transport system inner membrane component WS0569 PF12911 N-terminal TM domain of oligopeptide transport permease C WS0569 PF00528 Binding-protein-dependent transport system inner membrane component WS0570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WS0570 PF00005 ABC transporter WS0572 PF01738 Dienelactone hydrolase family WS0573 PF01435 Peptidase family M48 WS0574 PF03738 Glutathionylspermidine synthase preATP-grasp WS0578 PF13247 4Fe-4S dicluster domain WS0580 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WS0580 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WS0582 PF00578 AhpC/TSA family WS0583 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain WS0583 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain WS0583 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain WS0585 PF01479 S4 domain WS0585 PF01728 FtsJ-like methyltransferase WS0586 PF01687 Riboflavin kinase WS0586 PF06574 FAD synthetase WS0587 PF13847 Methyltransferase domain WS0588 PF01546 Peptidase family M20/M25/M40 WS0588 PF07687 Peptidase dimerisation domain WS0591 PF00593 TonB dependent receptor WS0591 PF07660 Secretin and TonB N terminus short domain WS0591 PF07715 TonB-dependent Receptor Plug Domain WS0595 PF13193 AMP-binding enzyme C-terminal domain WS0595 PF00501 AMP-binding enzyme WS0595 PF16177 Acetyl-coenzyme A synthetase N-terminus WS0596 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WS0596 PF14579 Helix-hairpin-helix motif WS0596 PF02811 PHP domain WS0596 PF11490 DNA polymerase III polC-type N-terminus II WS0596 PF14480 DNA polymerase III polC-type N-terminus I WS0596 PF00929 Exonuclease WS0596 PF07733 Bacterial DNA polymerase III alpha NTPase domain WS0598 PF00474 Sodium:solute symporter family WS0599 PF04341 Protein of unknown function, DUF485 WS0601 PF00474 Sodium:solute symporter family WS0603 PF01553 Acyltransferase WS0606 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase WS0607 PF01259 SAICAR synthetase WS0608 PF03572 Peptidase family S41 WS0608 PF13180 PDZ domain WS0609 PF00004 ATPase family associated with various cellular activities (AAA) WS0609 PF10431 C-terminal, D2-small domain, of ClpB protein WS0609 PF07724 AAA domain (Cdc48 subfamily) WS0609 PF02861 Clp amino terminal domain, pathogenicity island component WS0609 PF17871 AAA lid domain WS0611 PF02441 Flavoprotein WS0612 PF01467 Cytidylyltransferase-like WS0613 PF02223 Thymidylate kinase WS0614 PF00156 Phosphoribosyl transferase domain WS0617 PF00117 Glutamine amidotransferase class-I WS0618 PF00977 Histidine biosynthesis protein WS0621 PF00004 ATPase family associated with various cellular activities (AAA) WS0621 PF17862 AAA+ lid domain WS0621 PF01434 Peptidase family M41 WS0622 PF02666 Phosphatidylserine decarboxylase WS0623 PF01066 CDP-alcohol phosphatidyltransferase WS0624 PF08502 LeuA allosteric (dimerisation) domain WS0624 PF00682 HMGL-like WS0628 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit WS0629 PF02801 Beta-ketoacyl synthase, C-terminal domain WS0629 PF00109 Beta-ketoacyl synthase, N-terminal domain WS0630 PF00550 Phosphopantetheine attachment site WS0632 PF01165 Ribosomal protein S21 WS0634 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase WS0634 PF12801 4Fe-4S binding domain WS0634 PF13746 4Fe-4S dicluster domain WS0638 PF00005 ABC transporter WS0640 PF00672 HAMP domain WS0640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0640 PF00512 His Kinase A (phospho-acceptor) domain WS0641 PF00072 Response regulator receiver domain WS0641 PF00486 Transcriptional regulatory protein, C terminal WS0642 PF01219 Prokaryotic diacylglycerol kinase WS0643 PF00884 Sulfatase WS0643 PF08019 Phosphoethanolamine transferase EptA/EptB WS0644 PF00672 HAMP domain WS0644 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0644 PF17200 Single Cache domain 2 WS0646 PF01891 Cobalt uptake substrate-specific transmembrane region WS0649 PF00005 ABC transporter WS0651 PF00916 Sulfate permease family WS0651 PF01740 STAS domain WS0654 PF01636 Phosphotransferase enzyme family WS0656 PF03641 Possible lysine decarboxylase WS0657 PF00486 Transcriptional regulatory protein, C terminal WS0657 PF00072 Response regulator receiver domain WS0658 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0658 PF02743 Cache domain WS0658 PF00512 His Kinase A (phospho-acceptor) domain WS0660 PF17763 Glutaminase/Asparaginase C-terminal domain WS0660 PF00710 Asparaginase, N-terminal WS0661 PF03605 Anaerobic c4-dicarboxylate membrane transporter WS0662 PF00206 Lyase WS0662 PF10415 Fumarase C C-terminus WS0668 PF08003 Protein of unknown function (DUF1698) WS0670 PF01467 Cytidylyltransferase-like WS0671 PF01402 Ribbon-helix-helix protein, copG family WS0671 PF08753 NikR C terminal nickel binding domain WS0673 PF01402 Ribbon-helix-helix protein, copG family WS0673 PF08753 NikR C terminal nickel binding domain WS0674 PF06750 Bacterial Peptidase A24 N-terminal domain WS0674 PF01478 Type IV leader peptidase family WS0676 PF01416 tRNA pseudouridine synthase WS0679 PF01370 NAD dependent epimerase/dehydratase family WS0680 PF01467 Cytidylyltransferase-like WS0680 PF00294 pfkB family carbohydrate kinase WS0681 PF13580 SIS domain WS0689 PF00425 chorismate binding enzyme WS0690 PF01063 Amino-transferase class IV WS0691 PF02082 Transcriptional regulator WS0693 PF00158 Sigma-54 interaction domain WS0693 PF02954 Bacterial regulatory protein, Fis family WS0693 PF00072 Response regulator receiver domain WS0696 PF07536 HWE histidine kinase WS0696 PF13426 PAS domain WS0696 PF13581 Histidine kinase-like ATPase domain WS0697 PF00672 HAMP domain WS0697 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0697 PF12729 Four helix bundle sensory module for signal transduction WS0698 PF01556 DnaJ C terminal domain WS0698 PF00226 DnaJ domain WS0698 PF00684 DnaJ central domain WS0699 PF02132 RecR protein WS0700 PF13442 Cytochrome C oxidase, cbb3-type, subunit III WS0701 PF01168 Alanine racemase, N-terminal domain WS0701 PF00842 Alanine racemase, C-terminal domain WS0702 PF00149 Calcineurin-like phosphoesterase WS0708 PF13247 4Fe-4S dicluster domain WS0708 PF00037 4Fe-4S binding domain WS0709 PF01568 Molydopterin dinucleotide binding domain WS0709 PF10518 TAT (twin-arginine translocation) pathway signal sequence WS0709 PF00384 Molybdopterin oxidoreductase WS0709 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS0712 PF14535 AMP-binding enzyme C-terminal domain WS0712 PF00501 AMP-binding enzyme WS0719 PF00291 Pyridoxal-phosphate dependent enzyme WS0720 PF00881 Nitroreductase family WS0721 PF00768 D-alanyl-D-alanine carboxypeptidase WS0721 PF07943 Penicillin-binding protein 5, C-terminal domain WS0722 PF00375 Sodium:dicarboxylate symporter family WS0735 PF13247 4Fe-4S dicluster domain WS0737 PF00962 Adenosine/AMP deaminase WS0738 PF01869 BadF/BadG/BcrA/BcrD ATPase family WS0739 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component WS0741 PF13276 HTH-like domain WS0741 PF13333 Integrase core domain WS0741 PF00665 Integrase core domain WS0745 PF00633 Helix-hairpin-helix motif WS0745 PF14815 NUDIX domain WS0745 PF00730 HhH-GPD superfamily base excision DNA repair protein WS0746 PF00209 Sodium:neurotransmitter symporter family WS0752 PF02040 Arsenical pump membrane protein WS0753 PF01451 Low molecular weight phosphotyrosine protein phosphatase WS0756 PF00085 Thioredoxin WS0756 PF02683 Cytochrome C biogenesis protein transmembrane region WS0756 PF11412 Disulphide bond corrector protein DsbC WS0760 PF01451 Low molecular weight phosphotyrosine protein phosphatase WS0761 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0761 PF00672 HAMP domain WS0762 PF12849 PBP superfamily domain WS0764 PF00384 Molybdopterin oxidoreductase WS0764 PF01568 Molydopterin dinucleotide binding domain WS0764 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS0765 PF13247 4Fe-4S dicluster domain WS0766 PF01022 Bacterial regulatory protein, arsR family WS0767 PF17934 Tetracyclin repressor-like, C-terminal domain WS0767 PF00440 Bacterial regulatory proteins, tetR family WS0768 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WS0770 PF00873 AcrB/AcrD/AcrF family WS0771 PF02321 Outer membrane efflux protein WS0772 PF00563 EAL domain WS0772 PF10388 EAL-domain associated signalling protein domain WS0774 PF01177 Asp/Glu/Hydantoin racemase WS0775 PF08495 FIST N domain WS0775 PF00990 Diguanylate cyclase, GGDEF domain WS0775 PF00563 EAL domain WS0775 PF10442 FIST C domain WS0776 PF06039 Malate:quinone oxidoreductase (Mqo) WS0778 PF00258 Flavodoxin WS0781 PF00117 Glutamine amidotransferase class-I WS0781 PF00958 GMP synthase C terminal domain WS0781 PF03352 Methyladenine glycosylase WS0781 PF13302 Acetyltransferase (GNAT) domain WS0781 PF13673 Acetyltransferase (GNAT) domain WS0784 PF00155 Aminotransferase class I and II WS0785 PF12833 Helix-turn-helix domain WS0786 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle WS0786 PF14602 Hexapeptide repeat of succinyl-transferase WS0787 PF08543 Phosphomethylpyrimidine kinase WS0788 PF02581 Thiamine monophosphate synthase WS0790 PF07503 HypF finger WS0790 PF17788 HypF Kae1-like domain WS0790 PF01300 Telomere recombination WS0790 PF00708 Acylphosphatase WS0791 PF02492 CobW/HypB/UreG, nucleotide-binding domain WS0792 PF01455 HupF/HypC family WS0793 PF01924 Hydrogenase formation hypA family WS0795 PF00586 AIR synthase related protein, N-terminal domain WS0795 PF02769 AIR synthase related protein, C-terminal domain WS0796 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA WS0798 PF02684 Lipid-A-disaccharide synthetase WS0799 PF01272 Transcription elongation factor, GreA/GreB, C-term WS0799 PF03449 Transcription elongation factor, N-terminal WS0800 PF00692 dUTPase WS0802 PF15437 Plasminogen-binding protein pgbA C-terminal WS0803 PF03309 Type III pantothenate kinase WS0804 PF01634 ATP phosphoribosyltransferase WS0806 PF00563 EAL domain WS0806 PF00990 Diguanylate cyclase, GGDEF domain WS0806 PF08448 PAS fold WS0808 PF00581 Rhodanese-like domain WS0809 PF01177 Asp/Glu/Hydantoin racemase WS0810 PF07498 Rho termination factor, N-terminal domain WS0810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WS0810 PF07497 Rho termination factor, RNA-binding domain WS0812 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase WS0812 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain WS0812 PF13288 DXP reductoisomerase C-terminal domain WS0815 PF01134 Glucose inhibited division protein A WS0815 PF13932 GidA associated domain WS0816 PF03462 PCRF domain WS0816 PF00472 RF-1 domain WS0817 PF01649 Ribosomal protein S20 WS0818 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WS0818 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WS0818 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WS0818 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WS0819 PF01252 Signal peptidase (SPase) II WS0820 PF03129 Anticodon binding domain WS0820 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WS0820 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WS0821 PF00707 Translation initiation factor IF-3, C-terminal domain WS0821 PF05198 Translation initiation factor IF-3, N-terminal domain WS0822 PF01632 Ribosomal protein L35 WS0823 PF00453 Ribosomal protein L20 WS0826 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain WS0826 PF00391 PEP-utilising enzyme, mobile domain WS0826 PF02896 PEP-utilising enzyme, TIM barrel domain WS0827 PF00586 AIR synthase related protein, N-terminal domain WS0827 PF02769 AIR synthase related protein, C-terminal domain WS0827 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain WS0829 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WS0830 PF13183 4Fe-4S dicluster domain WS0830 PF13085 2Fe-2S iron-sulfur cluster binding domain WS0831 PF00890 FAD binding domain WS0831 PF02910 Fumarate reductase flavoprotein C-term WS0832 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WS0834 PF00582 Universal stress protein family WS0835 PF00994 Probable molybdopterin binding domain WS0835 PF03454 MoeA C-terminal region (domain IV) WS0835 PF03453 MoeA N-terminal region (domain I and II) WS0838 PF02634 FdhD/NarQ family WS0839 PF09107 Elongation factor SelB, winged helix WS0839 PF03144 Elongation factor Tu domain 2 WS0839 PF00009 Elongation factor Tu GTP binding domain WS0839 PF09106 Elongation factor SelB, winged helix WS0840 PF03841 L-seryl-tRNA selenium transferase WS0841 PF05230 MASE2 domain WS0841 PF00990 Diguanylate cyclase, GGDEF domain WS0843 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0843 PF16591 Helical bimodular sensor domain WS0843 PF00672 HAMP domain WS0844 PF00474 Sodium:solute symporter family WS0845 PF01145 SPFH domain / Band 7 family WS0845 PF16200 C-terminal region of band_7 WS0848 PF13188 PAS domain WS0848 PF00563 EAL domain WS0848 PF00990 Diguanylate cyclase, GGDEF domain WS0848 PF03707 Bacterial signalling protein N terminal repeat WS0849 PF00072 Response regulator receiver domain WS0850 PF00672 HAMP domain WS0850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0850 PF00512 His Kinase A (phospho-acceptor) domain WS0850 PF01627 Hpt domain WS0850 PF00072 Response regulator receiver domain WS0850 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) WS0852 PF00072 Response regulator receiver domain WS0853 PF00158 Sigma-54 interaction domain WS0853 PF00072 Response regulator receiver domain WS0853 PF02954 Bacterial regulatory protein, Fis family WS0854 PF00583 Acetyltransferase (GNAT) family WS0855 PF00202 Aminotransferase class-III WS0856 PF06339 Ectoine synthase WS0859 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0859 PF00672 HAMP domain WS0859 PF12729 Four helix bundle sensory module for signal transduction WS0861 PF06480 FtsH Extracellular WS0861 PF01434 Peptidase family M41 WS0861 PF00004 ATPase family associated with various cellular activities (AAA) WS0861 PF17862 AAA+ lid domain WS0864 PF00672 HAMP domain WS0864 PF16591 Helical bimodular sensor domain WS0864 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0867 PF02527 rRNA small subunit methyltransferase G WS0868 PF02547 Queuosine biosynthesis protein WS0869 PF00902 Sec-independent protein translocase protein (TatC) WS0872 PF02403 Seryl-tRNA synthetase N-terminal domain WS0872 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WS0874 PF03466 LysR substrate binding domain WS0874 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WS0876 PF00580 UvrD/REP helicase N-terminal domain WS0876 PF13361 UvrD-like helicase C-terminal domain WS0878 PF01509 TruB family pseudouridylate synthase (N terminal domain) WS0879 PF02599 Global regulator protein family WS0881 PF00288 GHMP kinases N terminal domain WS0883 PF01668 SmpB protein WS0885 PF01618 MotA/TolQ/ExbB proton channel family WS0886 PF02472 Biopolymer transport protein ExbD/TolR WS0894 PF02844 Phosphoribosylglycinamide synthetase, N domain WS0894 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain WS0894 PF02843 Phosphoribosylglycinamide synthetase, C domain WS0896 PF04453 LPS transport system D WS0896 PF03968 OstA-like protein WS0899 PF01138 3' exoribonuclease family, domain 1 WS0899 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain WS0899 PF00013 KH domain WS0899 PF03725 3' exoribonuclease family, domain 2 WS0899 PF00575 S1 RNA binding domain WS0900 PF00486 Transcriptional regulatory protein, C terminal WS0900 PF00072 Response regulator receiver domain WS0901 PF13426 PAS domain WS0901 PF00512 His Kinase A (phospho-acceptor) domain WS0901 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0901 PF00672 HAMP domain WS0902 PF00529 HlyD membrane-fusion protein of T1SS WS0902 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WS0903 PF00873 AcrB/AcrD/AcrF family WS0904 PF02321 Outer membrane efflux protein WS0907 PF00005 ABC transporter WS0908 PF00528 Binding-protein-dependent transport system inner membrane component WS0911 PF07715 TonB-dependent Receptor Plug Domain WS0911 PF00593 TonB dependent receptor WS0914 PF18793 Nitrous oxide reductase propeller repeat 2 WS0914 PF18764 Nitrous oxide reductase propeller repeat WS0916 PF18764 Nitrous oxide reductase propeller repeat WS0916 PF13473 Cupredoxin-like domain WS0916 PF18793 Nitrous oxide reductase propeller repeat 2 WS0920 PF12838 4Fe-4S dicluster domain WS0920 PF12800 4Fe-4S binding domain WS0923 PF13187 4Fe-4S dicluster domain WS0923 PF12801 4Fe-4S binding domain WS0924 PF00005 ABC transporter WS0929 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0929 PF00672 HAMP domain WS0929 PF17202 Single cache domain 3 WS0930 PF00892 EamA-like transporter family WS0931 PF01914 MarC family integral membrane protein WS0932 PF14535 AMP-binding enzyme C-terminal domain WS0932 PF00501 AMP-binding enzyme WS0934 PF00486 Transcriptional regulatory protein, C terminal WS0934 PF00072 Response regulator receiver domain WS0935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0935 PF00512 His Kinase A (phospho-acceptor) domain WS0935 PF00072 Response regulator receiver domain WS0935 PF08448 PAS fold WS0935 PF13188 PAS domain WS0936 PF13247 4Fe-4S dicluster domain WS0938 PF01568 Molydopterin dinucleotide binding domain WS0938 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS0938 PF00384 Molybdopterin oxidoreductase WS0939 PF00672 HAMP domain WS0939 PF16591 Helical bimodular sensor domain WS0939 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0940 PF00990 Diguanylate cyclase, GGDEF domain WS0940 PF03707 Bacterial signalling protein N terminal repeat WS0940 PF00563 EAL domain WS0944 PF12849 PBP superfamily domain WS0945 PF00005 ABC transporter WS0946 PF00528 Binding-protein-dependent transport system inner membrane component WS0947 PF00528 Binding-protein-dependent transport system inner membrane component WS0948 PF12849 PBP superfamily domain WS0949 PF00672 HAMP domain WS0949 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0949 PF17202 Single cache domain 3 WS0950 PF00486 Transcriptional regulatory protein, C terminal WS0950 PF00072 Response regulator receiver domain WS0951 PF00512 His Kinase A (phospho-acceptor) domain WS0951 PF11808 Phosphate regulon sensor protein PhoR WS0951 PF00989 PAS fold WS0951 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0953 PF01256 Carbohydrate kinase WS0953 PF03853 YjeF-related protein N-terminus WS0954 PF05690 Thiazole biosynthesis protein ThiG WS0956 PF02421 Ferrous iron transport protein B WS0956 PF07670 Nucleoside recognition WS0956 PF07664 Ferrous iron transport protein B C terminus WS0960 PF08479 POTRA domain, ShlB-type WS0960 PF17287 POTRA domain WS0960 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB WS0963 PF00465 Iron-containing alcohol dehydrogenase WS0964 PF08448 PAS fold WS0964 PF00990 Diguanylate cyclase, GGDEF domain WS0965 PF10442 FIST C domain WS0965 PF00990 Diguanylate cyclase, GGDEF domain WS0965 PF08495 FIST N domain WS0965 PF00563 EAL domain WS0968 PF01578 Cytochrome C assembly protein WS0968 PF05140 ResB-like family WS0969 PF02335 Cytochrome c552 WS0970 PF03264 NapC/NirT cytochrome c family, N-terminal region WS0973 PF02659 Putative manganese efflux pump WS0974 PF00072 Response regulator receiver domain WS0975 PF09308 LuxQ, periplasmic WS0975 PF00512 His Kinase A (phospho-acceptor) domain WS0975 PF00072 Response regulator receiver domain WS0975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0977 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WS0977 PF00005 ABC transporter WS0978 PF00005 ABC transporter WS0979 PF00528 Binding-protein-dependent transport system inner membrane component WS0981 PF00528 Binding-protein-dependent transport system inner membrane component WS0982 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WS0984 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WS0985 PF00528 Binding-protein-dependent transport system inner membrane component WS0986 PF12911 N-terminal TM domain of oligopeptide transport permease C WS0986 PF00528 Binding-protein-dependent transport system inner membrane component WS0987 PF00005 ABC transporter WS0988 PF00005 ABC transporter WS0989 PF01554 MatE WS0996 PF00924 Mechanosensitive ion channel WS0997 PF00586 AIR synthase related protein, N-terminal domain WS0997 PF02769 AIR synthase related protein, C-terminal domain WS1002 PF00672 HAMP domain WS1002 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1003 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases WS1003 PF10414 Sirohaem synthase dimerisation region WS1003 PF14824 Sirohaem biosynthesis protein central WS1004 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain WS1004 PF01077 Nitrite and sulphite reductase 4Fe-4S domain WS1006 PF00899 ThiF family WS1008 PF00009 Elongation factor Tu GTP binding domain WS1009 PF01507 Phosphoadenosine phosphosulfate reductase family WS1010 PF01507 Phosphoadenosine phosphosulfate reductase family WS1012 PF01053 Cys/Met metabolism PLP-dependent enzyme WS1013 PF13649 Methyltransferase domain WS1014 PF07690 Major Facilitator Superfamily WS1015 PF01053 Cys/Met metabolism PLP-dependent enzyme WS1016 PF01709 Transcriptional regulator WS1019 PF00216 Bacterial DNA-binding protein WS1021 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1021 PF08447 PAS fold WS1024 PF00563 EAL domain WS1024 PF05231 MASE1 WS1026 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WS1026 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WS1027 PF00342 Phosphoglucose isomerase WS1028 PF00365 Phosphofructokinase WS1030 PF00162 Phosphoglycerate kinase WS1032 PF01544 CorA-like Mg2+ transporter protein WS1033 PF00072 Response regulator receiver domain WS1033 PF00486 Transcriptional regulatory protein, C terminal WS1034 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1034 PF00989 PAS fold WS1034 PF00512 His Kinase A (phospho-acceptor) domain WS1034 PF08447 PAS fold WS1035 PF13458 Periplasmic binding protein WS1037 PF00999 Sodium/hydrogen exchanger family WS1037 PF02254 TrkA-N domain WS1038 PF01432 Peptidase family M3 WS1038 PF08439 Oligopeptidase F WS1044 PF00296 Luciferase-like monooxygenase WS1045 PF01475 Ferric uptake regulator family WS1046 PF01297 Zinc-uptake complex component A periplasmic WS1047 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1047 PF00672 HAMP domain WS1050 PF00551 Formyl transferase WS1053 PF00771 FHIPEP family WS1054 PF00312 Ribosomal protein S15 WS1058 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term WS1058 PF04509 CheC-like family WS1060 PF00730 HhH-GPD superfamily base excision DNA repair protein WS1060 PF00633 Helix-hairpin-helix motif WS1060 PF10576 Iron-sulfur binding domain of endonuclease III WS1064 PF00056 lactate/malate dehydrogenase, NAD binding domain WS1064 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain WS1065 PF00549 CoA-ligase WS1065 PF08442 ATP-grasp domain WS1066 PF00549 CoA-ligase WS1066 PF02629 CoA binding domain WS1068 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg WS1068 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase WS1068 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II WS1069 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WS1071 PF00692 dUTPase WS1072 PF00364 Biotin-requiring enzyme WS1074 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WS1074 PF00289 Biotin carboxylase, N-terminal domain WS1074 PF02785 Biotin carboxylase C-terminal domain WS1075 PF00669 Bacterial flagellin N-terminal helical region WS1075 PF00700 Bacterial flagellin C-terminal helical region WS1075 PF07196 Flagellin hook IN motif WS1076 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family WS1078 PF01584 CheW-like domain WS1080 PF01584 CheW-like domain WS1080 PF07194 P2 response regulator binding domain WS1080 PF02895 Signal transducing histidine kinase, homodimeric domain WS1080 PF01627 Hpt domain WS1080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1092 PF00437 Type II/IV secretion system protein WS1094 PF03743 Bacterial conjugation TrbI-like protein WS1102 PF13087 AAA domain WS1102 PF13086 AAA domain WS1102 PF13195 Protein of unknown function (DUF4011) WS1105 PF13614 AAA domain WS1112 PF00005 ABC transporter WS1114 PF09347 Domain of unknown function (DUF1989) WS1115 PF00289 Biotin carboxylase, N-terminal domain WS1115 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WS1115 PF02785 Biotin carboxylase C-terminal domain WS1118 PF01425 Amidase WS1119 PF01425 Amidase WS1120 PF01022 Bacterial regulatory protein, arsR family WS1121 PF00403 Heavy-metal-associated domain WS1124 PF00005 ABC transporter WS1125 PF01497 Periplasmic binding protein WS1126 PF07660 Secretin and TonB N terminus short domain WS1126 PF00593 TonB dependent receptor WS1126 PF07715 TonB-dependent Receptor Plug Domain WS1127 PF13649 Methyltransferase domain WS1129 PF18766 SWI2/SNF2 ATPase WS1129 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) WS1129 PF12008 Type I restriction and modification enzyme - subunit R C terminal WS1136 PF12161 HsdM N-terminal domain WS1136 PF02384 N-6 DNA Methylase WS1138 PF02537 CrcB-like protein, Camphor Resistance (CrcB) WS1146 PF01568 Molydopterin dinucleotide binding domain WS1146 PF00384 Molybdopterin oxidoreductase WS1146 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS1147 PF13247 4Fe-4S dicluster domain WS1149 PF02634 FdhD/NarQ family WS1157 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WS1157 PF00005 ABC transporter WS1158 PF00528 Binding-protein-dependent transport system inner membrane component WS1159 PF00528 Binding-protein-dependent transport system inner membrane component WS1166 PF02525 Flavodoxin-like fold WS1167 PF01638 HxlR-like helix-turn-helix WS1168 PF01638 HxlR-like helix-turn-helix WS1172 PF13187 4Fe-4S dicluster domain WS1172 PF12800 4Fe-4S binding domain WS1172 PF00037 4Fe-4S binding domain WS1174 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) WS1176 PF12801 4Fe-4S binding domain WS1176 PF12837 4Fe-4S binding domain WS1177 PF12838 4Fe-4S dicluster domain WS1177 PF12800 4Fe-4S binding domain WS1178 PF10518 TAT (twin-arginine translocation) pathway signal sequence WS1178 PF01568 Molydopterin dinucleotide binding domain WS1178 PF00384 Molybdopterin oxidoreductase WS1178 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS1179 PF01925 Sulfite exporter TauE/SafE WS1181 PF00027 Cyclic nucleotide-binding domain WS1181 PF00325 Bacterial regulatory proteins, crp family WS1183 PF03063 Prismane/CO dehydrogenase family WS1187 PF11791 Aconitate B N-terminal domain WS1187 PF06434 Aconitate hydratase 2 N-terminus WS1187 PF00330 Aconitase family (aconitate hydratase) WS1188 PF00291 Pyridoxal-phosphate dependent enzyme WS1189 PF00266 Aminotransferase class-V WS1193 PF13545 Crp-like helix-turn-helix domain WS1193 PF00027 Cyclic nucleotide-binding domain WS1194 PF00925 GTP cyclohydrolase II WS1195 PF03453 MoeA N-terminal region (domain I and II) WS1195 PF03454 MoeA C-terminal region (domain IV) WS1195 PF00994 Probable molybdopterin binding domain WS1197 PF02391 MoaE protein WS1199 PF00994 Probable molybdopterin binding domain WS1200 PF01967 MoaC family WS1201 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster WS1201 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS1202 PF01645 Conserved region in glutamate synthase WS1202 PF04898 Glutamate synthase central domain WS1202 PF01493 GXGXG motif WS1202 PF00310 Glutamine amidotransferases class-II WS1205 PF08447 PAS fold WS1205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1207 PF00512 His Kinase A (phospho-acceptor) domain WS1207 PF00672 HAMP domain WS1207 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1208 PF00072 Response regulator receiver domain WS1208 PF00486 Transcriptional regulatory protein, C terminal WS1209 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1209 PF13426 PAS domain WS1209 PF08447 PAS fold WS1210 PF05099 Tellurite resistance protein TerB WS1210 PF00226 DnaJ domain WS1212 PF03705 CheR methyltransferase, all-alpha domain WS1212 PF01739 CheR methyltransferase, SAM binding domain WS1213 PF01339 CheB methylesterase WS1213 PF00072 Response regulator receiver domain WS1215 PF09186 Domain of unknown function (DUF1949) WS1215 PF01205 Uncharacterized protein family UPF0029 WS1217 PF17202 Single cache domain 3 WS1217 PF00672 HAMP domain WS1217 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1218 PF14698 Argininosuccinate lyase C-terminal WS1218 PF00206 Lyase WS1220 PF01209 ubiE/COQ5 methyltransferase family WS1221 PF00589 Phage integrase family WS1221 PF18644 Phage integrase SAM-like domain WS1222 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase WS1222 PF00925 GTP cyclohydrolase II WS1224 PF02909 Tetracyclin repressor-like, C-terminal domain WS1224 PF00440 Bacterial regulatory proteins, tetR family WS1225 PF01227 GTP cyclohydrolase I WS1226 PF01435 Peptidase family M48 WS1227 PF01142 tRNA pseudouridine synthase D (TruD) WS1229 PF16591 Helical bimodular sensor domain WS1229 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1229 PF00672 HAMP domain WS1232 PF07715 TonB-dependent Receptor Plug Domain WS1232 PF00593 TonB dependent receptor WS1234 PF02574 Homocysteine S-methyltransferase WS1234 PF00809 Pterin binding enzyme WS1234 PF02607 B12 binding domain WS1234 PF02310 B12 binding domain WS1234 PF02965 Vitamin B12 dependent methionine synthase, activation domain WS1238 PF13277 YmdB-like protein WS1239 PF17757 UvrB interaction domain WS1239 PF03461 TRCF domain WS1239 PF02559 CarD-like/TRCF domain WS1239 PF00270 DEAD/DEAH box helicase WS1239 PF00271 Helicase conserved C-terminal domain WS1241 PF04225 Opacity-associated protein A LysM-like domain WS1241 PF01551 Peptidase family M23 WS1243 PF00072 Response regulator receiver domain WS1243 PF00990 Diguanylate cyclase, GGDEF domain WS1245 PF09334 tRNA synthetases class I (M) WS1245 PF13603 Leucyl-tRNA synthetase, Domain 2 WS1245 PF00133 tRNA synthetases class I (I, L, M and V) WS1247 PF07549 SecD/SecF GG Motif WS1247 PF02355 Protein export membrane protein WS1248 PF02355 Protein export membrane protein WS1249 PF02699 Preprotein translocase subunit WS1251 PF06965 Na+/H+ antiporter 1 WS1252 PF13361 UvrD-like helicase C-terminal domain WS1252 PF12705 PD-(D/E)XK nuclease superfamily WS1252 PF00580 UvrD/REP helicase N-terminal domain WS1253 PF00226 DnaJ domain WS1253 PF01556 DnaJ C terminal domain WS1253 PF00684 DnaJ central domain WS1254 PF13411 MerR HTH family regulatory protein WS1256 PF01661 Macro domain WS1256 PF16193 AAA C-terminal domain WS1256 PF05496 Holliday junction DNA helicase RuvB P-loop domain WS1256 PF12002 MgsA AAA+ ATPase C terminal WS1257 PF03548 Outer membrane lipoprotein carrier protein LolA WS1258 PF02810 SEC-C motif WS1258 PF07517 SecA DEAD-like domain WS1258 PF07516 SecA Wing and Scaffold domain WS1258 PF01043 SecA preprotein cross-linking domain WS1258 PF00271 Helicase conserved C-terminal domain WS1260 PF04359 Protein of unknown function (DUF493) WS1261 PF03061 Thioesterase superfamily WS1264 PF04954 Siderophore-interacting protein WS1264 PF00005 ABC transporter WS1264 PF00664 ABC transporter transmembrane region WS1264 PF08021 Siderophore-interacting FAD-binding domain WS1265 PF00005 ABC transporter WS1265 PF00664 ABC transporter transmembrane region WS1267 PF07690 Major Facilitator Superfamily WS1268 PF02659 Putative manganese efflux pump WS1270 PF00529 HlyD membrane-fusion protein of T1SS WS1270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WS1271 PF00873 AcrB/AcrD/AcrF family WS1272 PF00586 AIR synthase related protein, N-terminal domain WS1272 PF02769 AIR synthase related protein, C-terminal domain WS1273 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain WS1273 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain WS1274 PF02445 Quinolinate synthetase A protein WS1275 PF02666 Phosphatidylserine decarboxylase WS1276 PF04377 Arginine-tRNA-protein transferase, C terminus WS1276 PF04376 Arginine-tRNA-protein transferase, N terminus WS1277 PF01464 Transglycosylase SLT domain WS1277 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain WS1279 PF01132 Elongation factor P (EF-P) OB domain WS1279 PF09285 Elongation factor P, C-terminal WS1279 PF08207 Elongation factor P (EF-P) KOW-like domain WS1280 PF01116 Fructose-bisphosphate aldolase class-II WS1284 PF01926 50S ribosome-binding GTPase WS1284 PF10396 GTP-binding protein TrmE N-terminus WS1284 PF12631 MnmE helical domain WS1286 PF02096 60Kd inner membrane protein WS1286 PF14849 YidC periplasmic domain WS1287 PF01809 Putative membrane protein insertion efficiency factor WS1289 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WS1289 PF00289 Biotin carboxylase, N-terminal domain WS1289 PF02785 Biotin carboxylase C-terminal domain WS1290 PF02673 Bacitracin resistance protein BacA WS1292 PF07650 KH domain WS1292 PF01926 50S ribosome-binding GTPase WS1293 PF10431 C-terminal, D2-small domain, of ClpB protein WS1293 PF07724 AAA domain (Cdc48 subfamily) WS1294 PF00227 Proteasome subunit WS1295 PF03948 Ribosomal protein L9, C-terminal domain WS1295 PF01281 Ribosomal protein L9, N-terminal domain WS1299 PF00011 Hsp20/alpha crystallin family WS1300 PF00171 Aldehyde dehydrogenase family WS1301 PF01235 Sodium:alanine symporter family WS1302 PF04551 GcpE protein WS1304 PF00989 PAS fold WS1306 PF01230 HIT domain WS1307 PF01409 tRNA synthetases class II core domain (F) WS1307 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain WS1308 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain WS1308 PF03484 tRNA synthetase B5 domain WS1308 PF03147 Ferredoxin-fold anticodon binding domain WS1308 PF01588 Putative tRNA binding domain WS1309 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WS1310 PF02401 LytB protein WS1311 PF00575 S1 RNA binding domain WS1313 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain WS1313 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WS1313 PF01842 ACT domain WS1315 PF00950 ABC 3 transport family WS1316 PF00005 ABC transporter WS1320 PF03591 AzlC protein WS1321 PF00939 Sodium:sulfate symporter transmembrane region WS1322 PF01435 Peptidase family M48 WS1323 PF01451 Low molecular weight phosphotyrosine protein phosphatase WS1325 PF00149 Calcineurin-like phosphoesterase WS1328 PF00989 PAS fold WS1328 PF00512 His Kinase A (phospho-acceptor) domain WS1328 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1330 PF01810 LysE type translocator WS1333 PF02743 Cache domain WS1333 PF00672 HAMP domain WS1333 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1337 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1337 PF05227 CHASE3 domain WS1337 PF00672 HAMP domain WS1339 PF12833 Helix-turn-helix domain WS1339 PF00072 Response regulator receiver domain WS1340 PF00989 PAS fold WS1340 PF00512 His Kinase A (phospho-acceptor) domain WS1340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1342 PF00999 Sodium/hydrogen exchanger family WS1342 PF02254 TrkA-N domain WS1342 PF02080 TrkA-C domain WS1345 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain WS1345 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain WS1346 PF10502 Signal peptidase, peptidase S26 WS1347 PF02163 Peptidase family M50 WS1348 PF02502 Ribose/Galactose Isomerase WS1350 PF00156 Phosphoribosyl transferase domain WS1351 PF00291 Pyridoxal-phosphate dependent enzyme WS1352 PF09335 SNARE associated Golgi protein WS1353 PF02789 Cytosol aminopeptidase family, N-terminal domain WS1353 PF00883 Cytosol aminopeptidase family, catalytic domain WS1354 PF06071 Protein of unknown function (DUF933) WS1354 PF01926 50S ribosome-binding GTPase WS1357 PF14437 MafB19-like deaminase WS1366 PF00350 Dynamin family WS1370 PF12849 PBP superfamily domain WS1371 PF00528 Binding-protein-dependent transport system inner membrane component WS1372 PF00005 ABC transporter WS1374 PF02915 Rubrerythrin WS1375 PF09308 LuxQ, periplasmic WS1375 PF00072 Response regulator receiver domain WS1375 PF00512 His Kinase A (phospho-acceptor) domain WS1375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1376 PF00486 Transcriptional regulatory protein, C terminal WS1376 PF00072 Response regulator receiver domain WS1378 PF02080 TrkA-C domain WS1378 PF02254 TrkA-N domain WS1379 PF02386 Cation transport protein WS1381 PF04552 Sigma-54, DNA binding domain WS1381 PF04963 Sigma-54 factor, core binding domain WS1381 PF00309 Sigma-54 factor, Activator interacting domain (AID) WS1382 PF00111 2Fe-2S iron-sulfur cluster binding domain WS1384 PF03206 Nitrogen fixation protein NifW WS1385 PF13237 4Fe-4S dicluster domain WS1386 PF03270 Protein of unknown function, DUF269 WS1387 PF02579 Dinitrogenase iron-molybdenum cofactor WS1390 PF00148 Nitrogenase component 1 type Oxidoreductase WS1391 PF00148 Nitrogenase component 1 type Oxidoreductase WS1391 PF11844 Domain of unknown function (DUF3364) WS1392 PF00148 Nitrogenase component 1 type Oxidoreductase WS1394 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family WS1396 PF00682 HMGL-like WS1397 PF04055 Radical SAM superfamily WS1397 PF02579 Dinitrogenase iron-molybdenum cofactor WS1398 PF00248 Aldo/keto reductase family WS1399 PF02910 Fumarate reductase flavoprotein C-term WS1399 PF00890 FAD binding domain WS1400 PF06988 NifT/FixU protein WS1403 PF10431 C-terminal, D2-small domain, of ClpB protein WS1403 PF06689 ClpX C4-type zinc finger WS1403 PF07724 AAA domain (Cdc48 subfamily) WS1404 PF02954 Bacterial regulatory protein, Fis family WS1404 PF00158 Sigma-54 interaction domain WS1404 PF01590 GAF domain WS1405 PF02086 D12 class N6 adenine-specific DNA methyltransferase WS1406 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1406 PF02743 Cache domain WS1406 PF00672 HAMP domain WS1412 PF07670 Nucleoside recognition WS1412 PF07664 Ferrous iron transport protein B C terminus WS1412 PF04023 FeoA domain WS1412 PF17910 FeoB cytosolic helical domain WS1412 PF02421 Ferrous iron transport protein B WS1413 PF04023 FeoA domain WS1416 PF07715 TonB-dependent Receptor Plug Domain WS1416 PF00593 TonB dependent receptor WS1417 PF02321 Outer membrane efflux protein WS1418 PF12704 MacB-like periplasmic core domain WS1418 PF00005 ABC transporter WS1418 PF02687 FtsX-like permease family WS1419 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WS1421 PF07715 TonB-dependent Receptor Plug Domain WS1421 PF00593 TonB dependent receptor WS1425 PF07715 TonB-dependent Receptor Plug Domain WS1425 PF00593 TonB dependent receptor WS1426 PF03544 Gram-negative bacterial TonB protein C-terminal WS1427 PF02472 Biopolymer transport protein ExbD/TolR WS1429 PF01618 MotA/TolQ/ExbB proton channel family WS1430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS1430 PF01568 Molydopterin dinucleotide binding domain WS1430 PF00384 Molybdopterin oxidoreductase WS1431 PF12800 4Fe-4S binding domain WS1431 PF13247 4Fe-4S dicluster domain WS1434 PF00072 Response regulator receiver domain WS1434 PF12833 Helix-turn-helix domain WS1435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WS1436 PF00072 Response regulator receiver domain WS1436 PF08448 PAS fold WS1436 PF00512 His Kinase A (phospho-acceptor) domain WS1436 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1436 PF13188 PAS domain WS1442 PF12161 HsdM N-terminal domain WS1442 PF02384 N-6 DNA Methylase WS1443 PF09827 CRISPR associated protein Cas2 WS1444 PF01867 CRISPR associated protein Cas1 WS1445 PF18470 Cas9 alpha-helical lobe domain WS1445 PF13395 HNH endonuclease WS1445 PF18541 RuvC endonuclease subdomain 3 WS1449 PF13393 Histidyl-tRNA synthetase WS1449 PF03129 Anticodon binding domain WS1450 PF01075 Glycosyltransferase family 9 (heptosyltransferase) WS1452 PF01474 Class-II DAHP synthetase family WS1453 PF00285 Citrate synthase, C-terminal domain WS1454 PF00180 Isocitrate/isopropylmalate dehydrogenase WS1459 PF01734 Patatin-like phospholipase WS1461 PF01361 Tautomerase enzyme WS1462 PF05728 Uncharacterised protein family (UPF0227) WS1463 PF00486 Transcriptional regulatory protein, C terminal WS1463 PF00072 Response regulator receiver domain WS1464 PF00512 His Kinase A (phospho-acceptor) domain WS1464 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1464 PF00672 HAMP domain WS1465 PF02646 RmuC family WS1466 PF00005 ABC transporter WS1467 PF00005 ABC transporter WS1467 PF12399 Branched-chain amino acid ATP-binding cassette transporter WS1468 PF11862 Domain of unknown function (DUF3382) WS1468 PF02653 Branched-chain amino acid transport system / permease component WS1470 PF02653 Branched-chain amino acid transport system / permease component WS1471 PF13458 Periplasmic binding protein WS1472 PF00588 SpoU rRNA Methylase family WS1475 PF00551 Formyl transferase WS1475 PF01842 ACT domain WS1476 PF01343 Peptidase family S49 WS1477 PF01979 Amidohydrolase family WS1478 PF00924 Mechanosensitive ion channel WS1481 PF02683 Cytochrome C biogenesis protein transmembrane region WS1482 PF00271 Helicase conserved C-terminal domain WS1482 PF00270 DEAD/DEAH box helicase WS1483 PF00155 Aminotransferase class I and II WS1484 PF01225 Mur ligase family, catalytic domain WS1484 PF02875 Mur ligase family, glutamate ligase domain WS1484 PF08245 Mur ligase middle domain WS1486 PF00488 MutS domain V WS1486 PF01713 Smr domain WS1488 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain WS1489 PF01313 Bacterial export proteins, family 3 WS1491 PF03150 Di-haem cytochrome c peroxidase WS1491 PF00034 Cytochrome c WS1492 PF02621 Menaquinone biosynthesis WS1493 PF00154 recA bacterial DNA recombination protein WS1494 PF00113 Enolase, C-terminal TIM barrel domain WS1494 PF03952 Enolase, N-terminal domain WS1497 PF01202 Shikimate kinase WS1499 PF03631 Virulence factor BrkB WS1500 PF04055 Radical SAM superfamily WS1500 PF06968 Biotin and Thiamin Synthesis associated domain WS1501 PF01131 DNA topoisomerase WS1501 PF01751 Toprim domain WS1501 PF01396 Topoisomerase DNA binding C4 zinc finger WS1503 PF00669 Bacterial flagellin N-terminal helical region WS1503 PF00700 Bacterial flagellin C-terminal helical region WS1503 PF07196 Flagellin hook IN motif WS1508 PF00881 Nitroreductase family WS1509 PF07687 Peptidase dimerisation domain WS1509 PF01546 Peptidase family M20/M25/M40 WS1510 PF17200 Single Cache domain 2 WS1510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1510 PF00672 HAMP domain WS1514 PF00004 ATPase family associated with various cellular activities (AAA) WS1514 PF17862 AAA+ lid domain WS1514 PF06480 FtsH Extracellular WS1514 PF01434 Peptidase family M41 WS1515 PF04055 Radical SAM superfamily WS1515 PF00919 Uncharacterized protein family UPF0004 WS1517 PF01761 3-dehydroquinate synthase WS1519 PF01702 Queuine tRNA-ribosyltransferase WS1520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1520 PF02743 Cache domain WS1520 PF00672 HAMP domain WS1522 PF00512 His Kinase A (phospho-acceptor) domain WS1522 PF13426 PAS domain WS1522 PF00672 HAMP domain WS1522 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1523 PF00072 Response regulator receiver domain WS1523 PF00486 Transcriptional regulatory protein, C terminal WS1527 PF01814 Hemerythrin HHE cation binding domain WS1529 PF05683 Fumarase C-terminus WS1530 PF05681 Fumarate hydratase (Fumerase) WS1533 PF07729 FCD domain WS1533 PF00392 Bacterial regulatory proteins, gntR family WS1535 PF08274 PhnA Zinc-Ribbon WS1535 PF03831 PhnA domain WS1536 PF01435 Peptidase family M48 WS1538 PF05987 Bacterial protein of unknown function (DUF898) WS1539 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain WS1539 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain WS1540 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase WS1541 PF03061 Thioesterase superfamily WS1543 PF13302 Acetyltransferase (GNAT) domain WS1544 PF00875 DNA photolyase WS1544 PF03441 FAD binding domain of DNA photolyase WS1546 PF02374 Anion-transporting ATPase WS1548 PF13722 5TM C-terminal transporter carbon starvation CstA WS1548 PF02554 Carbon starvation protein CstA WS1550 PF00005 ABC transporter WS1552 PF00528 Binding-protein-dependent transport system inner membrane component WS1553 PF00528 Binding-protein-dependent transport system inner membrane component WS1554 PF13344 Haloacid dehalogenase-like hydrolase WS1554 PF18407 GCN5-related N-acetyltransferase like domain WS1555 PF08241 Methyltransferase domain WS1556 PF00563 EAL domain WS1556 PF13188 PAS domain WS1556 PF03707 Bacterial signalling protein N terminal repeat WS1556 PF00990 Diguanylate cyclase, GGDEF domain WS1558 PF00578 AhpC/TSA family WS1559 PF12704 MacB-like periplasmic core domain WS1559 PF02687 FtsX-like permease family WS1559 PF00005 ABC transporter WS1564 PF10634 Fe2+ transport protein WS1566 PF03239 Iron permease FTR1 family WS1568 PF00072 Response regulator receiver domain WS1568 PF00990 Diguanylate cyclase, GGDEF domain WS1577 PF05538 Campylobacter major outer membrane protein WS1578 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain WS1578 PF03900 Porphobilinogen deaminase, C-terminal domain WS1580 PF03129 Anticodon binding domain WS1580 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WS1580 PF04073 Aminoacyl-tRNA editing domain WS1581 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain WS1581 PF01488 Shikimate / quinate 5-dehydrogenase WS1581 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain WS1582 PF00348 Polyprenyl synthetase WS1583 PF08757 CotH kinase protein WS1585 PF02777 Iron/manganese superoxide dismutases, C-terminal domain WS1585 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain WS1587 PF00815 Histidinol dehydrogenase WS1588 PF01595 Cyclin M transmembrane N-terminal domain WS1588 PF03471 Transporter associated domain WS1588 PF00571 CBS domain WS1589 PF00210 Ferritin-like domain WS1590 PF00512 His Kinase A (phospho-acceptor) domain WS1590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1590 PF00989 PAS fold WS1592 PF02119 Flagellar P-ring protein WS1597 PF03575 Peptidase family S51 WS1598 PF04371 Porphyromonas-type peptidyl-arginine deiminase WS1600 PF00814 Glycoprotease family WS1601 PF08534 Redoxin WS1603 PF00117 Glutamine amidotransferase class-I WS1603 PF00958 GMP synthase C terminal domain WS1604 PF00890 FAD binding domain WS1607 PF08459 UvrC Helix-hairpin-helix N-terminal WS1607 PF02151 UvrB/uvrC motif WS1607 PF01541 GIY-YIG catalytic domain WS1610 PF00593 TonB dependent receptor WS1610 PF07715 TonB-dependent Receptor Plug Domain WS1615 PF01867 CRISPR associated protein Cas1 WS1616 PF09827 CRISPR associated protein Cas2 WS1617 PF01930 Domain of unknown function DUF83 WS1622 PF13476 AAA domain WS1623 PF01513 ATP-NAD kinase WS1628 PF00005 ABC transporter WS1628 PF17755 UvrA DNA-binding domain WS1628 PF17760 UvrA interaction domain WS1630 PF11849 Domain of unknown function (DUF3369) WS1633 PF00211 Adenylate and Guanylate cyclase catalytic domain WS1634 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD WS1635 PF14572 Phosphoribosyl synthetase-associated domain WS1635 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase WS1637 PF04509 CheC-like family WS1637 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term WS1638 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term WS1638 PF02154 Flagellar motor switch protein FliM WS1639 PF04545 Sigma-70, region 4 WS1639 PF04539 Sigma-70 region 3 WS1639 PF04542 Sigma-70 region 2 WS1641 PF10609 NUBPL iron-transfer P-loop NTPase WS1642 PF00448 SRP54-type protein, GTPase domain WS1643 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) WS1644 PF01321 Creatinase/Prolidase N-terminal domain WS1644 PF00557 Metallopeptidase family M24 WS1645 PF01220 Dehydroquinase class II WS1646 PF02222 ATP-grasp domain WS1648 PF04073 Aminoacyl-tRNA editing domain WS1650 PF13361 UvrD-like helicase C-terminal domain WS1650 PF00580 UvrD/REP helicase N-terminal domain WS1651 PF02623 FliW protein WS1652 PF10458 Valyl tRNA synthetase tRNA binding arm WS1652 PF00133 tRNA synthetases class I (I, L, M and V) WS1652 PF08264 Anticodon-binding domain of tRNA WS1655 PF03144 Elongation factor Tu domain 2 WS1655 PF00679 Elongation factor G C-terminus WS1655 PF00009 Elongation factor Tu GTP binding domain WS1655 PF06421 GTP-binding protein LepA C-terminus WS1656 PF04055 Radical SAM superfamily WS1657 PF06508 Queuosine biosynthesis protein QueC WS1659 PF01242 6-pyruvoyl tetrahydropterin synthase WS1660 PF17758 Proteasomal ATPase OB N-terminal domain WS1660 PF00004 ATPase family associated with various cellular activities (AAA) WS1660 PF16450 Proteasomal ATPase OB C-terminal domain WS1661 PF01545 Cation efflux family WS1661 PF16916 Dimerisation domain of Zinc Transporter WS1664 PF02049 Flagellar hook-basal body complex protein FliE WS1666 PF00460 Flagella basal body rod protein WS1666 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WS1667 PF00460 Flagella basal body rod protein WS1669 PF01098 Cell cycle protein WS1672 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1672 PF00672 HAMP domain WS1672 PF17202 Single cache domain 3 WS1673 PF08447 PAS fold WS1673 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1674 PF01554 MatE WS1675 PF00795 Carbon-nitrogen hydrolase WS1677 PF00899 ThiF family WS1678 PF01975 Survival protein SurE WS1679 PF00348 Polyprenyl synthetase WS1681 PF02575 YbaB/EbfC DNA-binding family WS1682 PF02261 Aspartate decarboxylase WS1684 PF01750 Hydrogenase maturation protease WS1685 PF01292 Prokaryotic cytochrome b561 WS1686 PF00374 Nickel-dependent hydrogenase WS1687 PF10518 TAT (twin-arginine translocation) pathway signal sequence WS1687 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal WS1687 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WS1688 PF08245 Mur ligase middle domain WS1688 PF02875 Mur ligase family, glutamate ligase domain WS1690 PF01106 NifU-like domain WS1691 PF01196 Ribosomal protein L17 WS1692 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain WS1692 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain WS1692 PF01000 RNA polymerase Rpb3/RpoA insert domain WS1693 PF00163 Ribosomal protein S4/S9 N-terminal domain WS1693 PF01479 S4 domain WS1694 PF00411 Ribosomal protein S11 WS1695 PF00416 Ribosomal protein S13/S18 WS1696 PF01176 Translation initiation factor 1A / IF-1 WS1697 PF00557 Metallopeptidase family M24 WS1698 PF00344 SecY translocase WS1699 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A WS1700 PF03719 Ribosomal protein S5, C-terminal domain WS1700 PF00333 Ribosomal protein S5, N-terminal domain WS1701 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast WS1702 PF00347 Ribosomal protein L6 WS1703 PF00410 Ribosomal protein S8 WS1704 PF00673 ribosomal L5P family C-terminus WS1704 PF00281 Ribosomal protein L5 WS1705 PF00467 KOW motif WS1705 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 WS1706 PF00238 Ribosomal protein L14p/L23e WS1707 PF00366 Ribosomal protein S17 WS1709 PF00252 Ribosomal protein L16p/L10e WS1710 PF07650 KH domain WS1710 PF00189 Ribosomal protein S3, C-terminal domain WS1711 PF00237 Ribosomal protein L22p/L17e WS1712 PF00203 Ribosomal protein S19 WS1713 PF00181 Ribosomal Proteins L2, RNA binding domain WS1713 PF03947 Ribosomal Proteins L2, C-terminal domain WS1714 PF00276 Ribosomal protein L23 WS1715 PF00573 Ribosomal protein L4/L1 family WS1716 PF00297 Ribosomal protein L3 WS1718 PF01351 Ribonuclease HII WS1722 PF04055 Radical SAM superfamily WS1722 PF06969 HemN C-terminal domain WS1723 PF00534 Glycosyl transferases group 1 WS1723 PF13439 Glycosyltransferase Family 4 WS1726 PF00072 Response regulator receiver domain WS1727 PF00072 Response regulator receiver domain WS1727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1727 PF00512 His Kinase A (phospho-acceptor) domain WS1727 PF00989 PAS fold WS1727 PF18415 Histidine kinase receptor ArcB trans-membrane domain WS1727 PF01627 Hpt domain WS1728 PF00293 NUDIX domain WS1729 PF00696 Amino acid kinase family WS1729 PF13840 ACT domain WS1729 PF01842 ACT domain WS1732 PF00809 Pterin binding enzyme WS1737 PF00183 Hsp90 protein WS1738 PF00953 Glycosyl transferase family 4 WS1740 PF02535 ZIP Zinc transporter WS1741 PF03649 Uncharacterised protein family (UPF0014) WS1742 PF03471 Transporter associated domain WS1742 PF00999 Sodium/hydrogen exchanger family WS1742 PF02080 TrkA-C domain WS1744 PF00578 AhpC/TSA family WS1748 PF00174 Oxidoreductase molybdopterin binding domain WS1749 PF01794 Ferric reductase like transmembrane component WS1751 PF04055 Radical SAM superfamily WS1751 PF06969 HemN C-terminal domain WS1752 PF10788 Protein of unknown function (DUF2603) WS1753 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WS1753 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WS1754 PF01261 Xylose isomerase-like TIM barrel WS1758 PF00460 Flagella basal body rod protein WS1758 PF07559 Flagellar basal body protein FlaE WS1758 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WS1758 PF07196 Flagellin hook IN motif WS1759 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WS1759 PF00460 Flagella basal body rod protein WS1759 PF07196 Flagellin hook IN motif WS1759 PF07559 Flagellar basal body protein FlaE WS1760 PF13861 FlgD Tudor-like domain WS1760 PF13860 FlgD Ig-like domain WS1760 PF03963 Flagellar hook capping protein - N-terminal region WS1764 PF00317 Ribonucleotide reductase, all-alpha domain WS1764 PF02867 Ribonucleotide reductase, barrel domain WS1764 PF03477 ATP cone domain WS1765 PF02562 PhoH-like protein WS1765 PF13638 PIN domain WS1766 PF05681 Fumarate hydratase (Fumerase) WS1768 PF03605 Anaerobic c4-dicarboxylate membrane transporter WS1769 PF04055 Radical SAM superfamily WS1769 PF18693 TRAM domain WS1769 PF00919 Uncharacterized protein family UPF0004 WS1770 PF01171 PP-loop family WS1776 PF04055 Radical SAM superfamily WS1776 PF01938 TRAM domain WS1776 PF00919 Uncharacterized protein family UPF0004 WS1778 PF13184 NusA-like KH domain WS1778 PF08529 NusA N-terminal domain WS1779 PF05538 Campylobacter major outer membrane protein WS1780 PF05538 Campylobacter major outer membrane protein WS1781 PF01336 OB-fold nucleic acid binding domain WS1781 PF02938 GAD domain WS1781 PF00152 tRNA synthetases class II (D, K and N) WS1784 PF00719 Inorganic pyrophosphatase WS1785 PF00361 Proton-conducting membrane transporter WS1786 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WS1786 PF00361 Proton-conducting membrane transporter WS1786 PF13244 Domain of unknown function (DUF4040) WS1787 PF00072 Response regulator receiver domain WS1790 PF12826 Helix-hairpin-helix motif WS1790 PF03120 NAD-dependent DNA ligase OB-fold domain WS1790 PF03119 NAD-dependent DNA ligase C4 zinc finger domain WS1790 PF01653 NAD-dependent DNA ligase adenylation domain WS1790 PF00533 BRCA1 C Terminus (BRCT) domain WS1792 PF01171 PP-loop family WS1793 PF07690 Major Facilitator Superfamily WS1795 PF01725 Ham1 family WS1798 PF00072 Response regulator receiver domain WS1798 PF00486 Transcriptional regulatory protein, C terminal WS1801 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WS1801 PF00460 Flagella basal body rod protein WS1802 PF00460 Flagella basal body rod protein WS1802 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WS1803 PF00005 ABC transporter WS1803 PF08402 TOBE domain WS1804 PF00528 Binding-protein-dependent transport system inner membrane component WS1807 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain WS1807 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain WS1808 PF00528 Binding-protein-dependent transport system inner membrane component WS1811 PF03459 TOBE domain WS1811 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WS1812 PF00694 Aconitase C-terminal domain WS1813 PF00180 Isocitrate/isopropylmalate dehydrogenase WS1817 PF00072 Response regulator receiver domain WS1817 PF00486 Transcriptional regulatory protein, C terminal WS1818 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1818 PF00512 His Kinase A (phospho-acceptor) domain WS1818 PF08521 Two-component sensor kinase N-terminal WS1819 PF12627 Probable RNA and SrmB- binding site of polymerase A WS1819 PF01743 Poly A polymerase head domain WS1819 PF01966 HD domain WS1821 PF00490 Delta-aminolevulinic acid dehydratase WS1822 PF04972 BON domain WS1823 PF01810 LysE type translocator WS1824 PF01594 AI-2E family transporter WS1825 PF05491 RuvB C-terminal winged helix domain WS1825 PF05496 Holliday junction DNA helicase RuvB P-loop domain WS1825 PF17864 RuvB AAA lid domain WS1826 PF02548 Ketopantoate hydroxymethyltransferase WS1827 PF00290 Tryptophan synthase alpha chain WS1831 PF08267 Cobalamin-independent synthase, N-terminal domain WS1831 PF01717 Cobalamin-independent synthase, Catalytic domain WS1836 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WS1837 PF12838 4Fe-4S dicluster domain WS1838 PF00374 Nickel-dependent hydrogenase WS1838 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit WS1838 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit WS1839 PF00361 Proton-conducting membrane transporter WS1839 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WS1840 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WS1841 PF00146 NADH dehydrogenase WS1842 PF00361 Proton-conducting membrane transporter WS1843 PF13247 4Fe-4S dicluster domain WS1845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1845 PF08447 PAS fold WS1845 PF13426 PAS domain WS1846 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain WS1846 PF02777 Iron/manganese superoxide dismutases, C-terminal domain WS1849 PF00384 Molybdopterin oxidoreductase WS1849 PF18364 Molybdopterin oxidoreductase N-terminal domain WS1849 PF01568 Molydopterin dinucleotide binding domain WS1851 PF00990 Diguanylate cyclase, GGDEF domain WS1852 PF02322 Cytochrome bd terminal oxidase subunit II WS1853 PF01654 Cytochrome bd terminal oxidase subunit I WS1857 PF02001 Protein of unknown function DUF134 WS1860 PF00474 Sodium:solute symporter family WS1861 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1861 PF00512 His Kinase A (phospho-acceptor) domain WS1861 PF00989 PAS fold WS1863 PF03480 Bacterial extracellular solute-binding protein, family 7 WS1864 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component WS1865 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component WS1868 PF01384 Phosphate transporter family WS1869 PF01584 CheW-like domain WS1869 PF00072 Response regulator receiver domain WS1870 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain WS1870 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain WS1871 PF01084 Ribosomal protein S18 WS1872 PF00436 Single-strand binding protein family WS1873 PF01250 Ribosomal protein S6 WS1874 PF06144 DNA polymerase III, delta subunit WS1875 PF00773 RNB domain WS1877 PF00311 Phosphoenolpyruvate carboxylase WS1878 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain WS1878 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain WS1879 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain WS1880 PF03776 Septum formation topological specificity factor MinE WS1884 PF03652 Holliday junction resolvase WS1885 PF01808 AICARFT/IMPCHase bienzyme WS1885 PF02142 MGS-like domain WS1886 PF00202 Aminotransferase class-III WS1890 PF04542 Sigma-70 region 2 WS1890 PF00140 Sigma-70 factor, region 1.2 WS1890 PF04545 Sigma-70, region 4 WS1890 PF04539 Sigma-70 region 3 WS1893 PF00561 alpha/beta hydrolase fold WS1894 PF01053 Cys/Met metabolism PLP-dependent enzyme WS1895 PF00571 CBS domain WS1895 PF00478 IMP dehydrogenase / GMP reductase domain WS1896 PF01425 Amidase WS1897 PF01264 Chorismate synthase WS1899 PF14622 Ribonuclease-III-like WS1899 PF00035 Double-stranded RNA binding motif WS1900 PF00075 RNase H WS1902 PF13662 Toprim domain WS1902 PF16730 DnaG-primase C-terminal, helicase-binding domain WS1902 PF08275 DNA primase catalytic core, N-terminal domain WS1902 PF01807 CHC2 zinc finger WS1905 PF01522 Polysaccharide deacetylase WS1907 PF00535 Glycosyl transferase family 2 WS1909 PF01075 Glycosyltransferase family 9 (heptosyltransferase) WS1910 PF02541 Ppx/GppA phosphatase family WS1911 PF12838 4Fe-4S dicluster domain WS1912 PF00218 Indole-3-glycerol phosphate synthase WS1914 PF03692 Putative zinc- or iron-chelating domain WS1915 PF05175 Methyltransferase small domain WS1916 PF08447 PAS fold WS1916 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1916 PF13426 PAS domain WS1917 PF02348 Cytidylyltransferase WS1919 PF03466 LysR substrate binding domain WS1919 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WS1920 PF00890 FAD binding domain WS1920 PF02910 Fumarate reductase flavoprotein C-term WS1921 PF13183 4Fe-4S dicluster domain WS1921 PF13085 2Fe-2S iron-sulfur cluster binding domain WS1922 PF02754 Cysteine-rich domain WS1923 PF12729 Four helix bundle sensory module for signal transduction WS1923 PF00672 HAMP domain WS1923 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1924 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase WS1924 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain WS1926 PF00239 Resolvase, N terminal domain WS1926 PF02796 Helix-turn-helix domain of resolvase WS1927 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1927 PF00512 His Kinase A (phospho-acceptor) domain WS1938 PF14306 PUA-like domain WS1938 PF01747 ATP-sulfurylase WS1939 PF00072 Response regulator receiver domain WS1939 PF00486 Transcriptional regulatory protein, C terminal WS1940 PF02542 YgbB family WS1940 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase WS1941 PF01964 Radical SAM ThiC family WS1942 PF10609 NUBPL iron-transfer P-loop NTPase WS1942 PF01883 Iron-sulfur cluster assembly protein WS1943 PF00005 ABC transporter WS1943 PF09383 NIL domain WS1944 PF00528 Binding-protein-dependent transport system inner membrane component WS1945 PF03180 NLPA lipoprotein WS1947 PF03458 UPF0126 domain WS1948 PF00132 Bacterial transferase hexapeptide (six repeats) WS1949 PF13089 Polyphosphate kinase N-terminal domain WS1949 PF17941 Polyphosphate kinase C-terminal domain 1 WS1949 PF13090 Polyphosphate kinase C-terminal domain 2 WS1949 PF02503 Polyphosphate kinase middle domain WS1951 PF00672 HAMP domain WS1951 PF16591 Helical bimodular sensor domain WS1951 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1953 PF07715 TonB-dependent Receptor Plug Domain WS1953 PF00593 TonB dependent receptor WS1954 PF00072 Response regulator receiver domain WS1954 PF00486 Transcriptional regulatory protein, C terminal WS1955 PF12282 Signal transduction histidine kinase WS1955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1955 PF07568 Histidine kinase WS1956 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1956 PF02203 Tar ligand binding domain homologue WS1956 PF00672 HAMP domain WS1958 PF00672 HAMP domain WS1958 PF16591 Helical bimodular sensor domain WS1958 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1960 PF02151 UvrB/uvrC motif WS1960 PF04851 Type III restriction enzyme, res subunit WS1960 PF12344 Ultra-violet resistance protein B WS1960 PF00271 Helicase conserved C-terminal domain WS1960 PF17757 UvrB interaction domain WS1964 PF18319 PriA DNA helicase Cys-rich region (CRR) domain WS1964 PF18074 Primosomal protein N C-terminal domain WS1964 PF00271 Helicase conserved C-terminal domain WS1964 PF00270 DEAD/DEAH box helicase WS1969 PF02405 Permease MlaE WS1971 PF01648 4'-phosphopantetheinyl transferase superfamily WS1972 PF05362 Lon protease (S16) C-terminal proteolytic domain WS1972 PF02190 ATP-dependent protease La (LON) substrate-binding domain WS1972 PF00004 ATPase family associated with various cellular activities (AAA) WS1973 PF13525 Outer membrane lipoprotein WS1974 PF02623 FliW protein WS1975 PF14748 Pyrroline-5-carboxylate reductase dimerisation WS1975 PF03807 NADP oxidoreductase coenzyme F420-dependent WS1979 PF00849 RNA pseudouridylate synthase WS1979 PF01479 S4 domain WS1980 PF00664 ABC transporter transmembrane region WS1980 PF00005 ABC transporter WS1981 PF00072 Response regulator receiver domain WS1981 PF13426 PAS domain WS1981 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1983 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WS1983 PF14579 Helix-hairpin-helix motif WS1983 PF02811 PHP domain WS1983 PF07733 Bacterial DNA polymerase III alpha NTPase domain WS1987 PF17863 AAA lid domain WS1987 PF07726 ATPase family associated with various cellular activities (AAA) WS1988 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal WS1988 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III WS1989 PF02504 Fatty acid synthesis protein WS1991 PF00334 Nucleoside diphosphate kinase WS1994 PF02772 S-adenosylmethionine synthetase, central domain WS1994 PF02773 S-adenosylmethionine synthetase, C-terminal domain WS1994 PF00438 S-adenosylmethionine synthetase, N-terminal domain WS1995 PF00578 AhpC/TSA family WS1995 PF10417 C-terminal domain of 1-Cys peroxiredoxin WS1996 PF02779 Transketolase, pyrimidine binding domain WS1996 PF02780 Transketolase, C-terminal domain WS1996 PF13292 1-deoxy-D-xylulose-5-phosphate synthase WS1998 PF01706 FliG C-terminal domain WS1998 PF14841 FliG middle domain WS1998 PF14842 FliG N-terminal domain WS1999 PF08345 Flagellar M-ring protein C-terminal WS1999 PF01514 Secretory protein of YscJ/FliF family WS2000 PF00155 Aminotransferase class I and II WS2001 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WS2001 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WS2001 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WS2001 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WS2002 PF04909 Amidohydrolase WS2003 PF00581 Rhodanese-like domain WS2004 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus WS2004 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus WS2005 PF02934 GatB/GatE catalytic domain WS2005 PF02637 GatB domain WS2006 PF06463 Molybdenum Cofactor Synthesis C WS2006 PF04055 Radical SAM superfamily WS2007 PF12804 MobA-like NTP transferase domain WS2009 PF01312 FlhB HrpN YscU SpaS Family WS2010 PF01368 DHH family WS2010 PF02272 DHHA1 domain WS2013 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase WS2015 PF08544 GHMP kinases C terminal WS2015 PF00288 GHMP kinases N terminal domain WS2016 PF04760 Translation initiation factor IF-2, N-terminal region WS2016 PF11987 Translation-initiation factor 2 WS2016 PF00009 Elongation factor Tu GTP binding domain WS2017 PF02033 Ribosome-binding factor A WS2018 PF02576 RimP N-terminal domain WS2018 PF17384 RimP C-terminal SH3 domain WS2019 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region WS2019 PF01872 RibD C-terminal domain WS2022 PF00005 ABC transporter WS2022 PF09383 NIL domain WS2023 PF02405 Permease MlaE WS2030 PF14659 Phage integrase, N-terminal SAM-like domain WS2030 PF00589 Phage integrase family WS2037 PF08245 Mur ligase middle domain WS2038 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 WS2038 PF00953 Glycosyl transferase family 4 WS2039 PF06415 BPG-independent PGAM N-terminus (iPGM_N) WS2039 PF01676 Metalloenzyme superfamily WS2040 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal WS2040 PF01926 50S ribosome-binding GTPase WS2042 PF00892 EamA-like transporter family WS2043 PF01475 Ferric uptake regulator family WS2045 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS2046 PF02743 Cache domain WS2046 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS2046 PF00512 His Kinase A (phospho-acceptor) domain WS2047 PF00072 Response regulator receiver domain WS2047 PF00486 Transcriptional regulatory protein, C terminal WS2048 PF00155 Aminotransferase class I and II WS2049 PF00912 Transglycosylase WS2049 PF17092 Penicillin-binding protein OB-like domain WS2049 PF00905 Penicillin binding protein transpeptidase domain WS2050 PF00117 Glutamine amidotransferase class-I WS2050 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain WS2052 PF01966 HD domain WS2056 PF00709 Adenylosuccinate synthetase WS2057 PF13393 Histidyl-tRNA synthetase WS2058 PF01255 Putative undecaprenyl diphosphate synthase WS2060 PF04127 DNA / pantothenate metabolism flavoprotein WS2060 PF02441 Flavoprotein WS2061 PF02719 Polysaccharide biosynthesis protein WS2062 PF00905 Penicillin binding protein transpeptidase domain WS2062 PF03717 Penicillin-binding Protein dimerisation domain WS2064 PF00583 Acetyltransferase (GNAT) family WS2065 PF01926 50S ribosome-binding GTPase WS2070 PF00475 Imidazoleglycerol-phosphate dehydratase WS2071 PF03330 Lytic transglycolase WS2071 PF05036 Sporulation related domain WS2072 PF01476 LysM domain WS2072 PF06725 3D domain WS2073 PF01026 TatD related DNase WS2075 PF00677 Lumazine binding domain WS2076 PF01312 FlhB HrpN YscU SpaS Family WS2078 PF01195 Peptidyl-tRNA hydrolase WS2079 PF01386 Ribosomal L25p family WS2079 PF14693 Ribosomal protein TL5, C-terminal domain WS2080 PF00923 Transaldolase/Fructose-6-phosphate aldolase WS2082 PF01584 CheW-like domain WS2083 PF02895 Signal transducing histidine kinase, homodimeric domain WS2083 PF01584 CheW-like domain WS2083 PF01627 Hpt domain WS2083 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS2083 PF07194 P2 response regulator binding domain WS2084 PF00072 Response regulator receiver domain WS2084 PF01584 CheW-like domain WS2086 PF02774 Semialdehyde dehydrogenase, dimerisation domain WS2086 PF01118 Semialdehyde dehydrogenase, NAD binding domain WS2088 PF00072 Response regulator receiver domain WS2088 PF12833 Helix-turn-helix domain WS2089 PF14602 Hexapeptide repeat of succinyl-transferase WS2089 PF12804 MobA-like NTP transferase domain WS2090 PF01618 MotA/TolQ/ExbB proton channel family WS2092 PF00691 OmpA family WS2092 PF13677 Membrane MotB of proton-channel complex MotA/MotB WS2093 PF00813 FliP family WS2094 PF05958 tRNA (Uracil-5-)-methyltransferase WS2095 PF03707 Bacterial signalling protein N terminal repeat WS2095 PF00563 EAL domain WS2095 PF00990 Diguanylate cyclase, GGDEF domain WS2096 PF12169 DNA polymerase III subunits gamma and tau domain III WS2096 PF12170 DNA polymerase III tau subunit V interacting with alpha WS2097 PF02885 Glycosyl transferase family, helical bundle domain WS2097 PF00591 Glycosyl transferase family, a/b domain WS2098 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE WS2099 PF00005 ABC transporter WS2099 PF12399 Branched-chain amino acid ATP-binding cassette transporter WS2100 PF04963 Sigma-54 factor, core binding domain WS2100 PF04552 Sigma-54, DNA binding domain WS2100 PF00309 Sigma-54 factor, Activator interacting domain (AID) WS2104 PF09424 Yqey-like protein WS2105 PF02107 Flagellar L-ring protein WS2106 PF02348 Cytidylyltransferase WS2109 PF08666 SAF domain WS2109 PF03102 NeuB family WS2110 PF00291 Pyridoxal-phosphate dependent enzyme WS2111 PF01790 Prolipoprotein diacylglyceryl transferase WS2113 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS2113 PF00512 His Kinase A (phospho-acceptor) domain WS2113 PF08448 PAS fold WS2113 PF13188 PAS domain WS2113 PF00072 Response regulator receiver domain WS2114 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS2114 PF00672 HAMP domain WS2115 PF00849 RNA pseudouridylate synthase WS2116 PF02390 Putative methyltransferase WS2116 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) WS2117 PF01784 NIF3 (NGG1p interacting factor 3) WS2118 PF02091 Glycyl-tRNA synthetase alpha subunit WS2121 PF00731 AIR carboxylase WS2124 PF00120 Glutamine synthetase, catalytic domain WS2124 PF03951 Glutamine synthetase, beta-Grasp domain WS2125 PF00106 short chain dehydrogenase WS2126 PF02664 S-Ribosylhomocysteinase (LuxS) WS2127 PF00512 His Kinase A (phospho-acceptor) domain WS2127 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS2127 PF00989 PAS fold WS2128 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WS2130 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II WS2130 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg WS2132 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase WS2133 PF13419 Haloacid dehalogenase-like hydrolase WS2134 PF01554 MatE WS2137 PF00380 Ribosomal protein S9/S16 WS2138 PF00572 Ribosomal protein L13 WS2140 PF00696 Amino acid kinase family WS2143 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WS2143 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain WS2147 PF02142 MGS-like domain WS2147 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WS2147 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WS2148 PF17284 Spermidine synthase tetramerisation domain WS2149 PF01121 Dephospho-CoA kinase WS2150 PF01678 Diaminopimelate epimerase WS2153 PF00033 Cytochrome b/b6/petB WS2153 PF00032 Cytochrome b(C-terminal)/b6/petD WS2155 PF04452 RNA methyltransferase WS2157 PF00762 Ferrochelatase WS2159 PF05140 ResB-like family WS2159 PF01578 Cytochrome C assembly protein WS2160 PF01479 S4 domain WS2163 PF13426 PAS domain WS2163 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS2163 PF08447 PAS fold WS2164 PF00764 Arginosuccinate synthase WS2165 PF02769 AIR synthase related protein, C-terminal domain WS2165 PF00586 AIR synthase related protein, N-terminal domain WS2168 PF08501 Shikimate dehydrogenase substrate binding domain WS2171 PF00403 Heavy-metal-associated domain WS2172 PF00117 Glutamine amidotransferase class-I WS2173 PF01699 Sodium/calcium exchanger protein WS2175 PF00156 Phosphoribosyl transferase domain WS2176 PF00860 Permease family WS2177 PF04055 Radical SAM superfamily WS2178 PF00483 Nucleotidyl transferase WS2179 PF00117 Glutamine amidotransferase class-I WS2180 PF00391 PEP-utilising enzyme, mobile domain WS2180 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain WS2185 PF13537 Glutamine amidotransferase domain WS2185 PF00733 Asparagine synthase WS2186 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family WS2187 PF00132 Bacterial transferase hexapeptide (six repeats) WS2188 PF01408 Oxidoreductase family, NAD-binding Rossmann fold WS2188 PF02894 Oxidoreductase family, C-terminal alpha/beta domain WS2189 PF02350 UDP-N-acetylglucosamine 2-epimerase WS2192 PF00733 Asparagine synthase WS2192 PF13537 Glutamine amidotransferase domain WS2198 PF07196 Flagellin hook IN motif WS2198 PF00669 Bacterial flagellin N-terminal helical region WS2198 PF00700 Bacterial flagellin C-terminal helical region WS2200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS2201 PF00072 Response regulator receiver domain WS2201 PF00486 Transcriptional regulatory protein, C terminal WS2203 PF03466 LysR substrate binding domain WS2203 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WS2204 PF03601 Conserved hypothetical protein 698 WS2205 PF01106 NifU-like domain WS2205 PF01592 NifU-like N terminal domain WS2205 PF04324 BFD-like [2Fe-2S] binding domain WS2206 PF00266 Aminotransferase class-V WS2207 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WS2207 PF18269 T3SS EscN ATPase C-terminal domain WS2209 PF05697 Bacterial trigger factor protein (TF) WS2209 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WS2209 PF05698 Bacterial trigger factor protein (TF) C-terminus WS2210 PF00574 Clp protease WS2212 PF01327 Polypeptide deformylase WS2213 PF13335 Magnesium chelatase, subunit ChlI C-terminal WS2213 PF01078 Magnesium chelatase, subunit ChlI WS2214 PF00005 ABC transporter WS2214 PF12848 ABC transporter WS2216 PF04264 YceI-like domain WS2217 PF00749 tRNA synthetases class I (E and Q), catalytic domain WS2219 PF01180 Dihydroorotate dehydrogenase WS2220 PF05193 Peptidase M16 inactive domain WS2220 PF00675 Insulinase (Peptidase family M16) WS2221 PF00701 Dihydrodipicolinate synthetase family WS2223 PF01066 CDP-alcohol phosphatidyltransferase WS2224 PF02163 Peptidase family M50 WS2224 PF17820 PDZ domain WS2225 PF01168 Alanine racemase, N-terminal domain WS2226 PF17820 PDZ domain WS2226 PF13180 PDZ domain WS2228 PF02511 Thymidylate synthase complementing protein WS2229 PF02075 Crossover junction endodeoxyribonuclease RuvC