WS0000 PF00308 Bacterial dnaA protein WS0000 PF08299 Bacterial dnaA protein helix-turn-helix WS0000 PF11638 DnaA N-terminal domain WS0001 PF00712 DNA polymerase III beta subunit, N-terminal domain WS0001 PF02767 DNA polymerase III beta subunit, central domain WS0001 PF02768 DNA polymerase III beta subunit, C-terminal domain WS0002 PF00204 DNA gyrase B WS0002 PF00986 DNA gyrase B subunit, carboxyl terminus WS0002 PF01751 Toprim domain WS0002 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0003 PF14489 QueF-like protein WS0004 PF02660 WS0004 WS0005 PF02152 Dihydroneopterin aldolase WS0006 PF02028 BCCT family transporter WS0007 PF00582 Universal stress protein family WS0009 PF13442 Cytochrome C oxidase, cbb3-type, subunit III WS0010 PF14827 Sensory domain of two-component sensor kinase WS0011 PF00072 Response regulator receiver domain WS0011 PF00486 Transcriptional regulatory protein, C terminal WS0012 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0013 PF07556 WS0013 WS0014 PF00571 CBS domain WS0016 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0017 PF10672 S-adenosylmethionine-dependent methyltransferase WS0018 PF02253 Phospholipase A1 WS0020 PF08901 WS0020 WS0021 PF01966 HD domain WS0021 PF03445 WS0021 WS0021 PF08335 GlnD PII-uridylyltransferase WS0022 PF01380 SIS domain WS0022 PF13522 Glutamine amidotransferase domain WS0023 PF00990 GGDEF domain WS0024 PF00266 Aminotransferase class-V WS0025 PF01370 NAD dependent epimerase/dehydratase family WS0026 PF02634 FdhD/NarQ family WS0027 PF01292 Prokaryotic cytochrome b561 WS0028 PF13247 4Fe-4S dicluster domain WS0029 PF00384 Molybdopterin oxidoreductase WS0029 PF01568 Molydopterin dinucleotide binding domain WS0029 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS0031 PF03795 YCII-related domain WS0032 PF13187 4Fe-4S dicluster domain WS0033 PF00583 Acetyltransferase (GNAT) family WS0035 PF05082 Rop-like WS0036 PF02719 Polysaccharide biosynthesis protein WS0037 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family WS0038 PF00132 Bacterial transferase hexapeptide (six repeats) WS0039 PF02397 WS0039 WS0040 PF00534 Glycosyl transferases group 1 WS0040 PF13477 Glycosyl transferase 4-like WS0042 PF00733 Asparagine synthase WS0042 PF13537 Glutamine amidotransferase domain WS0043 PF02516 Oligosaccharyl transferase STT3 subunit WS0044 PF00534 Glycosyl transferases group 1 WS0044 PF13439 Glycosyltransferase Family 4 WS0046 PF00733 Asparagine synthase WS0046 PF13537 Glutamine amidotransferase domain WS0047 PF13439 Glycosyltransferase Family 4 WS0047 PF13692 Glycosyl transferases group 1 WS0048 PF10096 WS0048 WS0050 PF00534 Glycosyl transferases group 1 WS0050 PF13439 Glycosyltransferase Family 4 WS0051 PF00535 Glycosyl transferase family 2 WS0052 PF00005 ABC transporter WS0052 PF00664 ABC transporter transmembrane region WS0054 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain WS0054 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain WS0054 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain WS0055 PF00072 Response regulator receiver domain WS0055 PF00486 Transcriptional regulatory protein, C terminal WS0056 PF04085 rod shape-determining protein MreC WS0057 PF06723 MreB/Mbl protein WS0058 PF06689 ClpX C4-type zinc finger WS0058 PF07724 AAA domain (Cdc48 subfamily) WS0058 PF10431 C-terminal, D2-small domain, of ClpB protein WS0059 PF00132 Bacterial transferase hexapeptide (six repeats) WS0059 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 WS0060 PF07977 FabA-like domain WS0061 PF02677 WS0061 WS0062 PF04055 Radical SAM superfamily WS0064 PF00977 Histidine biosynthesis protein WS0065 PF00398 Ribosomal RNA adenine dimethylase WS0066 PF00753 Metallo-beta-lactamase superfamily WS0066 PF07521 RNA-metabolising metallo-beta-lactamase WS0067 PF00571 CBS domain WS0067 PF01380 SIS domain WS0068 PF10398 Protein of unknown function (DUF2443) WS0069 PF09924 Uncharacterized conserved protein (DUF2156) WS0070 PF00583 Acetyltransferase (GNAT) family WS0071 PF00013 KH domain WS0071 PF01966 HD domain WS0071 PF12072 WS0071 WS0072 PF01812 5-formyltetrahydrofolate cyclo-ligase family WS0073 PF00578 AhpC/TSA family WS0074 PF00448 SRP54-type protein, GTPase domain WS0075 PF13481 AAA domain WS0075 PF13541 Subunit ChlI of Mg-chelatase WS0076 PF06518 Protein of unknown function (DUF1104) WS0077 PF00072 Response regulator receiver domain WS0077 PF00486 Transcriptional regulatory protein, C terminal WS0078 PF00512 His Kinase A (phospho-acceptor) domain WS0078 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0079 PF14358 WS0079 WS0080 PF00795 Carbon-nitrogen hydrolase WS0081 PF04461 Protein of unknown function (DUF520) WS0083 PF02674 WS0083 WS0084 PF00152 tRNA synthetases class II (D, K and N) WS0084 PF01336 OB-fold nucleic acid binding domain WS0085 PF00464 Serine hydroxymethyltransferase WS0086 PF08966 Domain of unknown function (DUF1882) WS0087 PF05036 Sporulation related domain WS0088 PF00425 chorismate binding enzyme WS0088 PF04715 Anthranilate synthase component I, N terminal region WS0089 PF09624 WS0089 WS0090 PF01502 Phosphoribosyl-AMP cyclohydrolase WS0090 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase WS0091 PF01145 SPFH domain / Band 7 family WS0092 PF01063 Aminotransferase class IV WS0093 PF01370 NAD dependent epimerase/dehydratase family WS0093 PF08338 Domain of unknown function (DUF1731) WS0094 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0095 PF01584 CheW-like domain WS0096 PF01580 FtsK/SpoIIIE family WS0096 PF09397 Ftsk gamma domain WS0096 PF13491 WS0096 WS0099 PF03547 WS0099 WS0101 PF00132 Bacterial transferase hexapeptide (six repeats) WS0101 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD WS0102 PF01842 ACT domain WS0102 PF10369 Small subunit of acetolactate synthase WS0103 PF00205 Thiamine pyrophosphate enzyme, central domain WS0103 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WS0103 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain WS0104 PF02541 Ppx/GppA phosphatase family WS0105 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ WS0106 PF04166 Pyridoxal phosphate biosynthetic protein PdxA WS0108 PF00072 Response regulator receiver domain WS0108 PF00563 EAL domain WS0108 PF00990 GGDEF domain WS0108 PF13426 PAS domain WS0110 PF00005 ABC transporter WS0111 PF00472 RF-1 domain WS0111 PF03462 PCRF domain WS0112 PF02569 Pantoate-beta-alanine ligase WS0113 PF04055 Radical SAM superfamily WS0114 PF12625 WS0114 WS0114 PF12833 Helix-turn-helix domain WS0116 PF00384 Molybdopterin oxidoreductase WS0116 PF01568 Molydopterin dinucleotide binding domain WS0116 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS0116 PF10518 TAT (twin-arginine translocation) pathway signal sequence WS0117 PF13247 4Fe-4S dicluster domain WS0118 PF03916 WS0118 WS0119 PF00072 Response regulator receiver domain WS0119 PF00486 Transcriptional regulatory protein, C terminal WS0120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0121 PF03264 NapC/NirT cytochrome c family, N-terminal region WS0122 PF14537 Cytochrome c3 WS0124 PF00890 FAD binding domain WS0125 PF00563 EAL domain WS0125 PF00990 GGDEF domain WS0125 PF14827 Sensory domain of two-component sensor kinase WS0126 PF00384 Molybdopterin oxidoreductase WS0126 PF01568 Molydopterin dinucleotide binding domain WS0126 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS0127 PF00892 EamA-like transporter family WS0128 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0129 PF03553 WS0129 WS0129 PF13726 WS0129 WS0130 PF00920 Dehydratase family WS0131 PF13380 CoA binding domain WS0132 PF00291 Pyridoxal-phosphate dependent enzyme WS0136 PF12836 Helix-hairpin-helix motif WS0137 PF00731 AIR carboxylase WS0138 PF02540 NAD synthase WS0139 PF01969 Protein of unknown function DUF111 WS0140 PF09861 Domain of unknown function (DUF2088) WS0141 PF01758 Sodium Bile acid symporter family WS0142 PF01098 WS0142 WS0143 PF00849 RNA pseudouridylate synthase WS0143 PF01479 S4 domain WS0145 PF02390 Putative methyltransferase WS0146 PF00005 ABC transporter WS0148 PF01551 Peptidase family M23 WS0149 PF03646 FlaG protein WS0150 PF02465 WS0150 WS0150 PF07195 WS0150 WS0151 PF02561 Flagellar protein FliS WS0153 PF09924 Uncharacterized conserved protein (DUF2156) WS0155 PF01258 Prokaryotic dksA/traR C4-type zinc finger WS0156 PF02590 Predicted SPOUT methyltransferase WS0157 PF01039 Carboxyl transferase domain WS0158 PF00459 Inositol monophosphatase family WS0159 PF13114 WS0159 WS0160 PF09312 SurA N-terminal domain WS0161 PF00132 Bacterial transferase hexapeptide (six repeats) WS0161 PF14602 Hexapeptide repeat of succinyl-transferase WS0161 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal WS0162 PF01207 Dihydrouridine synthase (Dus) WS0163 PF00258 Flavodoxin WS0163 PF00753 Metallo-beta-lactamase superfamily WS0164 PF06865 Protein of unknown function (DUF1255) WS0165 PF06942 WS0165 WS0166 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain WS0167 PF03435 Saccharopine dehydrogenase WS0167 PF16653 WS0167 WS0168 PF00873 AcrB/AcrD/AcrF family WS0170 PF01795 MraW methylase family WS0171 PF00390 Malic enzyme, N-terminal domain WS0171 PF03949 Malic enzyme, NAD binding domain WS0174 PF02464 Competence-damaged protein WS0175 PF03976 Polyphosphate kinase 2 (PPK2) WS0176 PF00133 tRNA synthetases class I (I, L, M and V) WS0176 PF08264 Anticodon-binding domain of tRNA WS0178 PF00115 Cytochrome C and Quinol oxidase polypeptide I WS0179 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO WS0180 PF05545 WS0180 WS0181 PF13442 Cytochrome C oxidase, cbb3-type, subunit III WS0181 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP WS0182 PF13179 WS0182 WS0185 PF05751 WS0185 WS0186 PF00750 tRNA synthetases class I (R) WS0186 PF03485 Arginyl tRNA synthetase N terminal domain WS0186 PF05746 DALR anticodon binding domain WS0187 PF02416 mttA/Hcf106 family WS0188 PF00625 Guanylate kinase WS0190 PF13091 PLD-like domain WS0191 PF01311 WS0191 WS0192 PF00005 ABC transporter WS0193 PF00889 Elongation factor TS WS0194 PF00318 Ribosomal protein S2 WS0196 PF00578 AhpC/TSA family WS0198 PF09335 WS0198 WS0199 PF02754 WS0199 WS0199 PF13534 4Fe-4S dicluster domain WS0200 PF09335 WS0200 WS0201 PF00581 Rhodanese-like domain WS0203 PF00860 Permease family WS0204 PF02606 Tetraacyldisaccharide-1-P 4'-kinase WS0205 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family WS0206 PF02540 NAD synthase WS0207 PF00691 OmpA family WS0207 PF05736 OprF membrane domain WS0208 PF13690 Chemotaxis phosphatase CheX WS0209 PF02092 WS0209 WS0212 PF00072 Response regulator receiver domain WS0212 PF00512 His Kinase A (phospho-acceptor) domain WS0212 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0212 PF08447 PAS fold WS0213 PF00072 Response regulator receiver domain WS0213 PF01627 Hpt domain WS0214 PF00072 Response regulator receiver domain WS0217 PF00133 tRNA synthetases class I (I, L, M and V) WS0217 PF01588 Putative tRNA binding domain WS0217 PF09334 tRNA synthetases class I (M) WS0218 PF00316 Fructose-1-6-bisphosphatase WS0219 PF00834 Ribulose-phosphate 3 epimerase family WS0220 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase WS0221 PF00929 Exonuclease WS0222 PF05175 Methyltransferase small domain WS0223 PF01435 Peptidase family M48 WS0223 PF16491 WS0223 WS0224 PF00117 Glutamine amidotransferase class-I WS0224 PF06418 CTP synthase N-terminus WS0225 PF01368 DHH family WS0225 PF02272 DHHA1 domain WS0226 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS0228 PF16522 WS0228 WS0230 PF17033 WS0230 WS0230 PF17129 WS0230 WS0231 PF00091 Tubulin/FtsZ family, GTPase domain WS0231 PF12327 FtsZ family, C-terminal domain WS0232 PF02491 SHS2 domain inserted in FTSA WS0232 PF14450 Cell division protein FtsA WS0233 PF13145 PPIC-type PPIASE domain WS0233 PF13624 SurA N-terminal domain WS0234 PF00202 Aminotransferase class-III WS0236 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) WS0237 PF00501 AMP-binding enzyme WS0237 PF13193 AMP-binding enzyme C-terminal domain WS0238 PF00696 Amino acid kinase family WS0239 PF01192 RNA polymerase Rpb6 WS0240 PF02824 TGS domain WS0240 PF04607 Region found in RelA / SpoT proteins WS0240 PF13328 HD domain WS0241 PF00579 tRNA synthetases class I (W and Y) WS0241 PF01479 S4 domain WS0242 PF03060 Nitronate monooxygenase WS0243 PF01520 N-acetylmuramoyl-L-alanine amidase WS0245 PF02621 Menaquinone biosynthesis WS0248 PF00005 ABC transporter WS0248 PF12848 ABC transporter WS0248 PF16326 WS0248 WS0249 PF04932 WS0249 WS0250 PF00534 Glycosyl transferases group 1 WS0250 PF01075 Glycosyltransferase family 9 (heptosyltransferase) WS0250 PF13439 Glycosyltransferase Family 4 WS0252 PF00534 Glycosyl transferases group 1 WS0252 PF13439 Glycosyltransferase Family 4 WS0253 PF01075 Glycosyltransferase family 9 (heptosyltransferase) WS0254 PF01075 Glycosyltransferase family 9 (heptosyltransferase) WS0255 PF00534 Glycosyl transferases group 1 WS0255 PF13439 Glycosyltransferase Family 4 WS0256 PF00005 ABC transporter WS0256 PF00664 ABC transporter transmembrane region WS0257 PF00072 Response regulator receiver domain WS0257 PF01584 CheW-like domain WS0258 PF09674 WS0258 WS0259 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WS0261 PF04316 Anti-sigma-28 factor, FlgM WS0264 PF01551 Peptidase family M23 WS0265 PF00293 NUDIX domain WS0266 PF15436 WS0266 WS0267 PF01565 FAD binding domain WS0267 PF02913 FAD linked oxidases, C-terminal domain WS0269 PF01717 Cobalamin-independent synthase, Catalytic domain WS0269 PF08267 Cobalamin-independent synthase, N-terminal domain WS0271 PF03824 WS0271 WS0271 PF06226 WS0271 WS0272 PF01464 Transglycosylase SLT domain WS0273 PF02325 WS0273 WS0274 PF00749 tRNA synthetases class I (E and Q), catalytic domain WS0276 PF00892 EamA-like transporter family WS0277 PF00005 ABC transporter WS0278 PF00497 Bacterial extracellular solute-binding proteins, family 3 WS0279 PF00497 Bacterial extracellular solute-binding proteins, family 3 WS0280 PF00528 Binding-protein-dependent transport system inner membrane component WS0281 PF02743 Cache domain WS0282 PF00665 Integrase core domain WS0282 PF01527 Transposase WS0282 PF13276 WS0282 WS0283 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0287 PF04454 Encapsulating protein for peroxidase WS0288 PF12833 Helix-turn-helix domain WS0289 PF00593 TonB dependent receptor WS0289 PF07715 TonB-dependent Receptor Plug Domain WS0290 PF13531 Bacterial extracellular solute-binding protein WS0291 PF09335 WS0291 WS0292 PF00691 OmpA family WS0292 PF13677 WS0292 WS0293 PF00484 Carbonic anhydrase WS0294 PF00793 DAHP synthetase I family WS0295 PF00885 6,7-dimethyl-8-ribityllumazine synthase WS0296 PF01029 NusB family WS0297 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family WS0298 PF00753 Metallo-beta-lactamase superfamily WS0299 PF01966 HD domain WS0299 PF13286 Phosphohydrolase-associated domain WS0300 PF13584 WS0300 WS0301 PF13437 HlyD family secretion protein WS0302 PF00202 Aminotransferase class-III WS0303 PF02321 Outer membrane efflux protein WS0304 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase WS0305 PF00512 His Kinase A (phospho-acceptor) domain WS0305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0306 PF00072 Response regulator receiver domain WS0306 PF00486 Transcriptional regulatory protein, C terminal WS0307 PF00717 Peptidase S24-like WS0308 PF00118 TCP-1/cpn60 chaperonin family WS0309 PF00166 Chaperonin 10 Kd subunit WS0310 PF00155 Aminotransferase class I and II WS0311 PF00579 tRNA synthetases class I (W and Y) WS0312 PF13649 Methyltransferase domain WS0313 PF03840 Preprotein translocase SecG subunit WS0314 PF01765 Ribosome recycling factor WS0315 PF00156 Phosphoribosyl transferase domain WS0316 PF06271 WS0316 WS0317 PF12832 MFS_1 like family WS0318 PF00119 ATP synthase A chain WS0320 PF02581 Thiamine monophosphate synthase/TENI WS0322 PF12836 Helix-hairpin-helix motif WS0323 PF03033 Glycosyltransferase family 28 N-terminal domain WS0323 PF04101 Glycosyltransferase family 28 C-terminal domain WS0324 PF01411 tRNA synthetases class II (A) WS0324 PF02272 DHHA1 domain WS0324 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WS0325 PF02545 Maf-like protein WS0326 PF03597 WS0326 WS0327 PF13738 Pyridine nucleotide-disulphide oxidoreductase WS0328 PF00830 Ribosomal L28 family WS0329 PF02080 TrkA-C domain WS0329 PF02254 TrkA-N domain WS0330 PF01960 ArgJ family WS0331 PF04325 Protein of unknown function (DUF465) WS0332 PF00800 Prephenate dehydratase WS0332 PF01817 Chorismate mutase type II WS0333 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain WS0333 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain WS0335 PF13500 AAA domain WS0336 PF02617 ATP-dependent Clp protease adaptor protein ClpS WS0337 PF00004 ATPase family associated with various cellular activities (AAA) WS0337 PF02861 Clp amino terminal domain WS0337 PF07724 AAA domain (Cdc48 subfamily) WS0337 PF10431 C-terminal, D2-small domain, of ClpB protein WS0338 PF03588 Leucyl/phenylalanyl-tRNA protein transferase WS0339 PF05673 Protein of unknown function (DUF815) WS0340 PF00483 Nucleotidyl transferase WS0342 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WS0343 PF00899 ThiF family WS0344 PF00072 Response regulator receiver domain WS0344 PF00990 GGDEF domain WS0345 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WS0345 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WS0346 PF01027 Inhibitor of apoptosis-promoting Bax1 WS0348 PF02153 Prephenate dehydrogenase WS0350 PF01103 Surface antigen WS0350 PF07244 Surface antigen variable number repeat WS0351 PF04055 Radical SAM superfamily WS0352 PF00675 Insulinase (Peptidase family M16) WS0352 PF05193 Peptidase M16 inactive domain WS0353 PF00271 Helicase conserved C-terminal domain WS0353 PF04851 Type III restriction enzyme, res subunit WS0354 PF00772 DnaB-like helicase N terminal domain WS0354 PF03796 DnaB-like helicase C terminal domain WS0355 PF03772 WS0355 WS0356 PF04367 WS0356 WS0357 PF01040 UbiA prenyltransferase family WS0361 PF02592 WS0361 WS0363 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD WS0365 PF00521 DNA gyrase/topoisomerase IV, subunit A WS0365 PF03989 DNA gyrase C-terminal domain, beta-propeller WS0367 PF00072 Response regulator receiver domain WS0367 PF00158 Sigma-54 interaction domain WS0368 PF01118 Semialdehyde dehydrogenase, NAD binding domain WS0368 PF02774 Semialdehyde dehydrogenase, dimerisation domain WS0369 PF03350 WS0369 WS0370 PF01208 Uroporphyrinogen decarboxylase (URO-D) WS0371 PF04290 WS0371 WS0372 PF06808 WS0372 WS0373 PF03480 Bacterial extracellular solute-binding protein, family 7 WS0374 PF04055 Radical SAM superfamily WS0374 PF13353 4Fe-4S single cluster domain WS0375 PF04402 Protein of unknown function (DUF541) WS0376 PF00072 Response regulator receiver domain WS0378 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0378 PF11845 WS0378 WS0380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WS0380 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase WS0381 PF13247 4Fe-4S dicluster domain WS0382 PF03916 WS0382 WS0383 PF01578 WS0383 WS0383 PF05140 WS0383 WS0384 PF03653 WS0384 WS0385 PF08238 Sel1 repeat WS0387 PF05573 NosL WS0389 PF02687 WS0389 WS0390 PF00005 ABC transporter WS0393 PF13899 Thioredoxin-like WS0394 PF03473 MOSC domain WS0395 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 WS0395 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain WS0396 PF02597 ThiS family WS0397 PF00899 ThiF family WS0398 PF00990 GGDEF domain WS0398 PF03924 CHASE domain WS0399 PF01243 Pyridoxamine 5'-phosphate oxidase WS0400 PF00375 Sodium:dicarboxylate symporter family WS0402 PF00155 Aminotransferase class I and II WS0403 PF05977 Transmembrane secretion effector WS0404 PF12900 Pyridoxamine 5'-phosphate oxidase WS0407 PF03109 WS0407 WS0408 PF03547 WS0408 WS0409 PF00543 Nitrogen regulatory protein P-II WS0410 PF00909 Ammonium Transporter Family WS0411 PF16576 WS0411 WS0412 PF00873 AcrB/AcrD/AcrF family WS0413 PF02321 Outer membrane efflux protein WS0414 PF00072 Response regulator receiver domain WS0414 PF00990 GGDEF domain WS0414 PF13426 PAS domain WS0415 PF00072 Response regulator receiver domain WS0415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0415 PF08447 PAS fold WS0415 PF13188 PAS domain WS0416 PF00206 Lyase WS0416 PF10397 Adenylosuccinate lyase C-terminus WS0417 PF00849 RNA pseudouridylate synthase WS0418 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) WS0419 PF00795 Carbon-nitrogen hydrolase WS0420 PF00268 Ribonucleotide reductase, small chain WS0421 PF00122 E1-E2 ATPase WS0421 PF00403 Heavy-metal-associated domain WS0421 PF00702 haloacid dehalogenase-like hydrolase WS0422 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily WS0423 PF13561 Enoyl-(Acyl carrier protein) reductase WS0424 PF00121 Triosephosphate isomerase WS0426 PF13432 Tetratricopeptide repeat WS0426 PF13519 von Willebrand factor type A domain WS0426 PF14559 Tetratricopeptide repeat WS0427 PF13519 von Willebrand factor type A domain WS0430 PF00476 DNA polymerase family A WS0430 PF01367 5'-3' exonuclease, C-terminal SAM fold WS0430 PF01612 3'-5' exonuclease WS0430 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain WS0432 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0433 PF08495 WS0433 WS0434 PF00924 Mechanosensitive ion channel WS0435 PF01230 HIT domain WS0436 PF08245 Mur ligase middle domain WS0437 PF00708 Acylphosphatase WS0437 PF12697 Alpha/beta hydrolase family WS0438 PF01820 D-ala D-ala ligase N-terminus WS0438 PF07478 D-ala D-ala ligase C-terminus WS0439 PF02624 YcaO-like family WS0440 PF01330 RuvA N terminal domain WS0440 PF07499 RuvA, C-terminal domain WS0440 PF14520 Helix-hairpin-helix domain WS0441 PF03961 WS0441 WS0442 PF03023 WS0442 WS0443 PF01406 tRNA synthetases class I (C) catalytic domain WS0444 PF01197 Ribosomal protein L31 WS0445 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases WS0446 PF00588 SpoU rRNA Methylase family WS0446 PF08032 RNA 2'-O ribose methyltransferase substrate binding WS0449 PF00155 Aminotransferase class I and II WS0450 PF00742 Homoserine dehydrogenase WS0450 PF01842 ACT domain WS0450 PF03447 Homoserine dehydrogenase, NAD binding domain WS0451 PF02021 Uncharacterised protein family UPF0102 WS0452 PF00085 Thioredoxin WS0454 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS0455 PF01113 Dihydrodipicolinate reductase, N-terminus WS0455 PF05173 Dihydrodipicolinate reductase, C-terminus WS0456 PF00156 Phosphoribosyl transferase domain WS0456 PF13537 Glutamine amidotransferase domain WS0457 PF04055 Radical SAM superfamily WS0457 PF16199 WS0457 WS0458 PF05430 S-adenosyl-L-methionine-dependent methyltransferase WS0461 PF00584 SecE/Sec61-gamma subunits of protein translocation complex WS0462 PF00467 KOW motif WS0462 PF02357 Transcription termination factor nusG WS0463 PF00298 Ribosomal protein L11, RNA binding domain WS0463 PF03946 Ribosomal protein L11, N-terminal domain WS0464 PF00687 Ribosomal protein L1p/L10e family WS0465 PF00466 Ribosomal protein L10 WS0466 PF00542 Ribosomal protein L7/L12 C-terminal domain WS0466 PF16320 WS0466 WS0467 PF00562 RNA polymerase Rpb2, domain 6 WS0467 PF00623 RNA polymerase Rpb1, domain 2 WS0467 PF04560 RNA polymerase Rpb2, domain 7 WS0467 PF04561 RNA polymerase Rpb2, domain 2 WS0467 PF04563 RNA polymerase beta subunit WS0467 PF04565 RNA polymerase Rpb2, domain 3 WS0467 PF04983 RNA polymerase Rpb1, domain 3 WS0467 PF04997 RNA polymerase Rpb1, domain 1 WS0467 PF04998 RNA polymerase Rpb1, domain 5 WS0467 PF05000 RNA polymerase Rpb1, domain 4 WS0467 PF10385 RNA polymerase beta subunit external 1 domain WS0468 PF00164 Ribosomal protein S12/S23 WS0469 PF00177 Ribosomal protein S7p/S5e WS0470 PF00009 Elongation factor Tu GTP binding domain WS0470 PF00679 Elongation factor G C-terminus WS0470 PF03144 Elongation factor Tu domain 2 WS0470 PF03764 Elongation factor G, domain IV WS0470 PF14492 Elongation Factor G, domain II WS0471 PF02811 PHP domain WS0472 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 WS0473 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WS0474 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit WS0475 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit WS0476 PF16514 WS0476 WS0477 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS0477 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region WS0477 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster WS0478 PF00037 4Fe-4S binding domain WS0478 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WS0478 PF13510 2Fe-2S iron-sulfur cluster binding domain WS0479 PF00037 4Fe-4S binding domain WS0479 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS0479 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WS0479 PF13510 2Fe-2S iron-sulfur cluster binding domain WS0481 PF00146 NADH dehydrogenase WS0482 PF12838 4Fe-4S dicluster domain WS0483 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 WS0484 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WS0485 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains WS0485 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WS0487 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains WS0488 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains WS0490 PF09976 Tetratricopeptide repeat WS0494 PF00012 Hsp70 protein WS0495 PF01025 GrpE WS0497 PF00596 Class II Aldolase and Adducin N-terminal domain WS0498 PF00669 Bacterial flagellin N-terminal helical region WS0499 PF00216 Bacterial DNA-binding protein WS0502 PF01042 Endoribonuclease L-PSP WS0503 PF00829 Ribosomal prokaryotic L21 protein WS0504 PF01016 Ribosomal L27 protein WS0505 PF01018 GTP1/OBG WS0505 PF01926 50S ribosome-binding GTPase WS0506 PF00696 Amino acid kinase family WS0507 PF00551 Formyl transferase WS0507 PF02911 Formyl transferase, C-terminal domain WS0508 PF03099 Biotin/lipoate A/B protein ligase family WS0509 PF13614 AAA domain WS0510 PF02195 ParB-like nuclease domain WS0511 PF00430 ATP synthase B/B' CF(0) WS0512 PF00430 ATP synthase B/B' CF(0) WS0513 PF00213 ATP synthase delta (OSCP) subunit WS0514 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WS0514 PF00306 ATP synthase alpha/beta chain, C terminal domain WS0514 PF02874 ATP synthase alpha/beta family, beta-barrel domain WS0515 PF00231 ATP synthase WS0516 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WS0516 PF02874 ATP synthase alpha/beta family, beta-barrel domain WS0517 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain WS0518 PF01618 WS0518 WS0519 PF02472 Biopolymer transport protein ExbD/TolR WS0520 PF13103 TonB C terminal WS0521 PF04052 TolB amino-terminal domain WS0522 PF00691 OmpA family WS0523 PF13432 Tetratricopeptide repeat WS0525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WS0526 PF02954 Bacterial regulatory protein, Fis family WS0527 PF00698 Acyl transferase domain WS0528 PF01048 Phosphorylase superfamily WS0529 PF00300 Histidine phosphatase superfamily (branch 1) WS0530 PF00437 Type II/IV secretion system protein WS0531 PF07963 Prokaryotic N-terminal methylation motif WS0532 PF07963 Prokaryotic N-terminal methylation motif WS0533 PF00437 Type II/IV secretion system protein WS0537 PF07963 Prokaryotic N-terminal methylation motif WS0541 PF00263 WS0541 WS0541 PF07655 WS0541 WS0541 PF07660 Secretin and TonB N terminus short domain WS0542 PF12895 Anaphase-promoting complex, cyclosome, subunit 3 WS0543 PF00437 Type II/IV secretion system protein WS0543 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain WS0544 PF00482 Type II secretion system (T2SS), protein F WS0545 PF01475 Ferric uptake regulator family WS0547 PF00448 SRP54-type protein, GTPase domain WS0547 PF02881 SRP54-type protein, helical bundle domain WS0547 PF02978 Signal peptide binding domain WS0548 PF00886 Ribosomal protein S16 WS0549 PF13083 KH domain WS0550 PF05239 PRC-barrel domain WS0551 PF01746 tRNA (Guanine-1)-methyltransferase WS0552 PF01245 Ribosomal protein L19 WS0553 PF00132 Bacterial transferase hexapeptide (six repeats) WS0554 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain WS0555 PF02130 Uncharacterized protein family UPF0054 WS0556 PF04214 WS0556 WS0557 PF03167 Uracil DNA glycosylase superfamily WS0558 PF02686 Glu-tRNAGln amidotransferase C subunit WS0559 PF00330 Aconitase family (aconitate hydratase) WS0560 PF00543 Nitrogen regulatory protein P-II WS0561 PF00456 Transketolase, thiamine diphosphate binding domain WS0561 PF02779 Transketolase, pyrimidine binding domain WS0561 PF02780 Transketolase, C-terminal domain WS0562 PF12705 PD-(D/E)XK nuclease superfamily WS0563 PF13664 WS0563 WS0564 PF03883 WS0564 WS0565 PF00364 Biotin-requiring enzyme WS0565 PF00682 HMGL-like WS0565 PF02436 Conserved carboxylase domain WS0566 PF02601 WS0566 WS0566 PF13742 WS0566 WS0567 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WS0568 PF00528 Binding-protein-dependent transport system inner membrane component WS0569 PF00528 Binding-protein-dependent transport system inner membrane component WS0569 PF12911 WS0569 WS0570 PF00005 ABC transporter WS0570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WS0571 PF00565 Staphylococcal nuclease homologue WS0572 PF01738 Dienelactone hydrolase family WS0573 PF01435 Peptidase family M48 WS0574 PF03738 Glutathionylspermidine synthase preATP-grasp WS0578 PF13247 4Fe-4S dicluster domain WS0579 PF01292 Prokaryotic cytochrome b561 WS0580 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WS0580 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WS0581 PF05573 NosL WS0582 PF00578 AhpC/TSA family WS0583 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain WS0583 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain WS0583 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain WS0585 PF01479 S4 domain WS0585 PF01728 FtsJ-like methyltransferase WS0586 PF01687 Riboflavin kinase WS0586 PF06574 FAD synthetase WS0587 PF13847 Methyltransferase domain WS0588 PF01546 Peptidase family M20/M25/M40 WS0588 PF07687 Peptidase dimerisation domain WS0589 PF04542 Sigma-70 region 2 WS0589 PF08281 Sigma-70, region 4 WS0590 PF04773 FecR protein WS0590 PF16344 WS0590 WS0591 PF00593 TonB dependent receptor WS0591 PF07660 Secretin and TonB N terminus short domain WS0591 PF07715 TonB-dependent Receptor Plug Domain WS0593 PF03929 WS0593 WS0595 PF00501 AMP-binding enzyme WS0595 PF13193 AMP-binding enzyme C-terminal domain WS0595 PF16177 WS0595 WS0596 PF00929 Exonuclease WS0597 PF00027 Cyclic nucleotide-binding domain WS0597 PF03445 WS0597 WS0597 PF10335 WS0597 WS0598 PF00474 Sodium:solute symporter family WS0599 PF04341 WS0599 WS0601 PF00474 Sodium:solute symporter family WS0602 PF13937 WS0602 WS0603 PF01553 Acyltransferase WS0605 PF13507 CobB/CobQ-like glutamine amidotransferase domain WS0606 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase WS0607 PF01259 SAICAR synthetase WS0608 PF03572 Peptidase family S41 WS0608 PF13180 PDZ domain WS0609 PF00004 ATPase family associated with various cellular activities (AAA) WS0609 PF02861 Clp amino terminal domain WS0609 PF07724 AAA domain (Cdc48 subfamily) WS0609 PF10431 C-terminal, D2-small domain, of ClpB protein WS0610 PF13144 SAF-like WS0611 PF02441 Flavoprotein WS0612 PF01467 Cytidylyltransferase WS0613 PF02223 Thymidylate kinase WS0615 PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB WS0617 PF00117 Glutamine amidotransferase class-I WS0618 PF00977 Histidine biosynthesis protein WS0619 PF00072 Response regulator receiver domain WS0620 PF06325 Ribosomal protein L11 methyltransferase (PrmA) WS0621 PF00004 ATPase family associated with various cellular activities (AAA) WS0621 PF01434 Peptidase family M41 WS0623 PF01066 CDP-alcohol phosphatidyltransferase WS0624 PF00682 HMGL-like WS0624 PF08502 LeuA allosteric (dimerisation) domain WS0626 PF00581 Rhodanese-like domain WS0627 PF11853 WS0627 WS0628 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit WS0629 PF00109 Beta-ketoacyl synthase, N-terminal domain WS0629 PF02801 Beta-ketoacyl synthase, C-terminal domain WS0630 PF00550 Phosphopantetheine attachment site WS0631 PF13561 Enoyl-(Acyl carrier protein) reductase WS0632 PF01165 Ribosomal protein S21 WS0633 PF13384 Homeodomain-like domain WS0634 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase WS0634 PF12801 WS0634 WS0634 PF13746 4Fe-4S dicluster domain WS0635 PF03595 Voltage-dependent anion channel WS0637 PF02687 WS0637 WS0638 PF00005 ABC transporter WS0640 PF00512 His Kinase A (phospho-acceptor) domain WS0640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0641 PF00072 Response regulator receiver domain WS0641 PF00486 Transcriptional regulatory protein, C terminal WS0642 PF01219 Prokaryotic diacylglycerol kinase WS0643 PF00884 Sulfatase WS0643 PF08019 WS0643 WS0644 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0645 PF10670 WS0645 WS0646 PF01891 Cobalt uptake substrate-specific transmembrane region WS0648 PF02361 Cobalt transport protein WS0649 PF00005 ABC transporter WS0650 PF01810 WS0650 WS0651 PF00916 WS0651 WS0651 PF01740 STAS domain WS0652 PF08378 WS0652 WS0653 PF00535 Glycosyl transferase family 2 WS0654 PF01636 Phosphotransferase enzyme family WS0656 PF03641 Possible lysine decarboxylase WS0657 PF00072 Response regulator receiver domain WS0657 PF00486 Transcriptional regulatory protein, C terminal WS0658 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0658 PF08448 PAS fold WS0660 PF00710 Asparaginase WS0661 PF03605 WS0661 WS0662 PF00206 Lyase WS0662 PF10415 Fumarase C C-terminus WS0665 PF00583 Acetyltransferase (GNAT) family WS0668 PF08003 Protein of unknown function (DUF1698) WS0670 PF01467 Cytidylyltransferase WS0670 PF02410 Oligomerisation domain WS0671 PF08753 NikR C terminal nickel binding domain WS0673 PF01402 Ribbon-helix-helix protein, copG family WS0674 PF01478 Type IV leader peptidase family WS0674 PF06750 WS0674 WS0675 PF03739 WS0675 WS0676 PF01416 tRNA pseudouridine synthase WS0677 PF13386 WS0677 WS0678 PF13242 HAD-hyrolase-like WS0679 PF01370 NAD dependent epimerase/dehydratase family WS0680 PF00294 pfkB family carbohydrate kinase WS0680 PF01467 Cytidylyltransferase WS0681 PF13580 SIS domain WS0684 PF03477 ATP cone domain WS0684 PF13597 Anaerobic ribonucleoside-triphosphate reductase WS0686 PF13597 Anaerobic ribonucleoside-triphosphate reductase WS0687 PF04055 Radical SAM superfamily WS0687 PF13353 4Fe-4S single cluster domain WS0688 PF04074 Domain of unknown function (DUF386) WS0689 PF00425 chorismate binding enzyme WS0690 PF01063 Aminotransferase class IV WS0691 PF02082 Transcriptional regulator WS0692 PF00704 Glycosyl hydrolases family 18 WS0693 PF00072 Response regulator receiver domain WS0693 PF07228 Stage II sporulation protein E (SpoIIE) WS0694 PF13581 Histidine kinase-like ATPase domain WS0696 PF08447 PAS fold WS0697 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0698 PF00226 DnaJ domain WS0698 PF00684 DnaJ central domain WS0698 PF01556 DnaJ C terminal domain WS0699 PF02132 RecR protein WS0700 PF00034 Cytochrome c WS0701 PF00842 Alanine racemase, C-terminal domain WS0701 PF01168 Alanine racemase, N-terminal domain WS0702 PF00149 Calcineurin-like phosphoesterase WS0703 PF00892 EamA-like transporter family WS0705 PF01292 Prokaryotic cytochrome b561 WS0705 PF09626 Dihaem cytochrome c WS0706 PF00034 Cytochrome c WS0707 PF03916 WS0707 WS0708 PF13247 4Fe-4S dicluster domain WS0709 PF00384 Molybdopterin oxidoreductase WS0709 PF01568 Molydopterin dinucleotide binding domain WS0709 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS0712 PF00501 AMP-binding enzyme WS0712 PF14535 AMP-binding enzyme C-terminal domain WS0713 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase WS0714 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg WS0714 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WS0715 PF03547 WS0715 WS0716 PF03061 Thioesterase superfamily WS0719 PF00291 Pyridoxal-phosphate dependent enzyme WS0720 PF00881 Nitroreductase family WS0721 PF00768 D-alanyl-D-alanine carboxypeptidase WS0722 PF00375 Sodium:dicarboxylate symporter family WS0724 PF00710 Asparaginase WS0725 PF00892 EamA-like transporter family WS0726 PF00892 EamA-like transporter family WS0730 PF13187 4Fe-4S dicluster domain WS0730 PF13237 4Fe-4S dicluster domain WS0731 PF02613 Nitrate reductase delta subunit WS0735 PF13247 4Fe-4S dicluster domain WS0736 PF01292 Prokaryotic cytochrome b561 WS0737 PF00962 Adenosine/AMP deaminase WS0738 PF01869 BadF/BadG/BcrA/BcrD ATPase family WS0739 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component WS0741 PF00665 Integrase core domain WS0742 PF00665 Integrase core domain WS0742 PF01527 Transposase WS0742 PF13276 WS0742 WS0745 PF00633 Helix-hairpin-helix motif WS0745 PF00730 HhH-GPD superfamily base excision DNA repair protein WS0746 PF00209 Sodium:neurotransmitter symporter family WS0747 PF06808 WS0747 WS0748 PF16868 WS0748 WS0749 PF13442 Cytochrome C oxidase, cbb3-type, subunit III WS0751 PF01022 Bacterial regulatory protein, arsR family WS0752 PF02040 WS0752 WS0753 PF01451 Low molecular weight phosphotyrosine protein phosphatase WS0754 PF03773 WS0754 WS0755 PF13192 Thioredoxin domain WS0756 PF02683 WS0756 WS0757 PF04324 BFD-like [2Fe-2S] binding domain WS0760 PF01451 Low molecular weight phosphotyrosine protein phosphatase WS0761 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0762 PF12849 PBP superfamily domain WS0763 PF03916 WS0763 WS0764 PF00384 Molybdopterin oxidoreductase WS0764 PF01568 Molydopterin dinucleotide binding domain WS0764 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS0765 PF12800 4Fe-4S binding domain WS0765 PF13247 4Fe-4S dicluster domain WS0766 PF01022 Bacterial regulatory protein, arsR family WS0767 PF00440 Bacterial regulatory proteins, tetR family WS0767 PF14246 AefR-like transcriptional repressor, C-terminal region WS0768 PF13533 Biotin-lipoyl like WS0770 PF00873 AcrB/AcrD/AcrF family WS0771 PF02321 Outer membrane efflux protein WS0772 PF00563 EAL domain WS0773 PF05818 WS0773 WS0774 PF01177 Asp/Glu/Hydantoin racemase WS0775 PF00563 EAL domain WS0775 PF00990 GGDEF domain WS0775 PF13426 PAS domain WS0776 PF06039 WS0776 WS0778 PF00258 Flavodoxin WS0780 PF11127 Protein of unknown function (DUF2892) WS0781 PF03352 Methyladenine glycosylase WS0783 PF17033 WS0783 WS0783 PF17129 WS0783 WS0784 PF00155 Aminotransferase class I and II WS0785 PF06445 GyrI-like small molecule binding domain WS0785 PF12833 Helix-turn-helix domain WS0786 PF14602 Hexapeptide repeat of succinyl-transferase WS0786 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle WS0786 PF14790 Tetrahydrodipicolinate N-succinyltransferase N-terminal WS0787 PF08543 Phosphomethylpyrimidine kinase WS0788 PF02581 Thiamine monophosphate synthase/TENI WS0790 PF01300 Telomere recombination WS0790 PF07503 HypF finger WS0791 PF02492 CobW/HypB/UreG, nucleotide-binding domain WS0792 PF01455 HupF/HypC family WS0793 PF01924 Hydrogenase formation hypA family WS0794 PF13087 AAA domain WS0794 PF13604 AAA domain WS0795 PF00586 AIR synthase related protein, N-terminal domain WS0795 PF02769 AIR synthase related protein, C-terminal domain WS0796 PF01155 Hydrogenase expression/synthesis hypA family WS0798 PF02684 WS0798 WS0799 PF01272 Transcription elongation factor, GreA/GreB, C-term WS0799 PF03449 Transcription elongation factor, N-terminal WS0800 PF00692 dUTPase WS0801 PF09976 Tetratricopeptide repeat WS0803 PF03309 Type III pantothenate kinase WS0804 PF01634 ATP phosphoribosyltransferase WS0806 PF00563 EAL domain WS0806 PF00990 GGDEF domain WS0808 PF00581 Rhodanese-like domain WS0809 PF01177 Asp/Glu/Hydantoin racemase WS0810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WS0810 PF07497 Rho termination factor, RNA-binding domain WS0810 PF07498 Rho termination factor, N-terminal domain WS0811 PF12118 WS0811 WS0812 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase WS0812 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal WS0812 PF13288 DXP reductoisomerase C-terminal domain WS0813 PF01148 Cytidylyltransferase family WS0814 PF04307 WS0814 WS0815 PF01134 Glucose inhibited division protein A WS0815 PF13932 GidA associated domain 3 WS0816 PF00472 RF-1 domain WS0816 PF03462 PCRF domain WS0817 PF01649 Ribosomal protein S20 WS0818 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WS0818 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WS0818 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WS0818 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WS0819 PF01252 WS0819 WS0820 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WS0820 PF03129 Anticodon binding domain WS0820 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WS0821 PF00707 Translation initiation factor IF-3, C-terminal domain WS0821 PF05198 Translation initiation factor IF-3, N-terminal domain WS0822 PF01632 Ribosomal protein L35 WS0823 PF00453 Ribosomal protein L20 WS0826 PF00391 PEP-utilising enzyme, mobile domain WS0826 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain WS0826 PF02896 PEP-utilising enzyme, TIM barrel domain WS0827 PF00586 AIR synthase related protein, N-terminal domain WS0827 PF02769 AIR synthase related protein, C-terminal domain WS0829 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WS0830 PF13085 2Fe-2S iron-sulfur cluster binding domain WS0830 PF13183 4Fe-4S dicluster domain WS0831 PF00890 FAD binding domain WS0831 PF02910 Fumarate reductase flavoprotein C-term WS0832 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WS0834 PF00582 Universal stress protein family WS0835 PF00994 Probable molybdopterin binding domain WS0835 PF03453 MoeA N-terminal region (domain I and II) WS0835 PF03454 MoeA C-terminal region (domain IV) WS0837 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WS0838 PF02634 FdhD/NarQ family WS0839 PF00009 Elongation factor Tu GTP binding domain WS0839 PF09107 Elongation factor SelB, winged helix WS0840 PF03841 L-seryl-tRNA selenium transferase WS0841 PF00990 GGDEF domain WS0843 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0843 PF12729 WS0843 WS0844 PF00474 Sodium:solute symporter family WS0845 PF01145 SPFH domain / Band 7 family WS0846 PF01957 NfeD-like C-terminal, partner-binding WS0847 PF01047 MarR family WS0848 PF00563 EAL domain WS0848 PF02378 Phosphotransferase system, EIIC WS0849 PF00072 Response regulator receiver domain WS0849 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0850 PF00072 Response regulator receiver domain WS0850 PF00497 Bacterial extracellular solute-binding proteins, family 3 WS0850 PF00512 His Kinase A (phospho-acceptor) domain WS0850 PF01627 Hpt domain WS0850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0850 PF09084 NMT1/THI5 like WS0852 PF00072 Response regulator receiver domain WS0852 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0853 PF00072 Response regulator receiver domain WS0853 PF00486 Transcriptional regulatory protein, C terminal WS0854 PF00583 Acetyltransferase (GNAT) family WS0855 PF00202 Aminotransferase class-III WS0856 PF06339 WS0856 WS0858 PF13411 MerR HTH family regulatory protein WS0859 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0859 PF12729 WS0859 WS0860 PF00892 EamA-like transporter family WS0861 PF00004 ATPase family associated with various cellular activities (AAA) WS0862 PF13432 Tetratricopeptide repeat WS0864 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0864 PF02743 Cache domain WS0866 PF02069 Prokaryotic metallothionein WS0867 PF02527 rRNA small subunit methyltransferase G WS0868 PF02547 Queuosine biosynthesis protein WS0869 PF00902 Sec-independent protein translocase protein (TatC) WS0870 PF02416 mttA/Hcf106 family WS0872 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WS0872 PF02403 Seryl-tRNA synthetase N-terminal domain WS0873 PF13432 Tetratricopeptide repeat WS0874 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WS0874 PF03466 LysR substrate binding domain WS0876 PF00580 UvrD/REP helicase N-terminal domain WS0876 PF13361 UvrD-like helicase C-terminal domain WS0878 PF01509 TruB family pseudouridylate synthase (N terminal domain) WS0879 PF02599 Global regulator protein family WS0881 PF00288 GHMP kinases N terminal domain WS0883 PF01668 SmpB protein WS0885 PF01618 WS0885 WS0886 PF02472 Biopolymer transport protein ExbD/TolR WS0889 PF00691 OmpA family WS0890 PF02690 WS0890 WS0892 PF00034 Cytochrome c WS0894 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain WS0894 PF02843 Phosphoribosylglycinamide synthetase, C domain WS0894 PF02844 Phosphoribosylglycinamide synthetase, N domain WS0895 PF06271 WS0895 WS0896 PF04453 Organic solvent tolerance protein WS0897 PF02470 WS0897 WS0898 PF00156 Phosphoribosyl transferase domain WS0899 PF00013 KH domain WS0899 PF00575 S1 RNA binding domain WS0899 PF01138 3' exoribonuclease family, domain 1 WS0899 PF03725 3' exoribonuclease family, domain 2 WS0899 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain WS0900 PF00072 Response regulator receiver domain WS0900 PF00486 Transcriptional regulatory protein, C terminal WS0901 PF00512 His Kinase A (phospho-acceptor) domain WS0901 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0901 PF08495 WS0901 WS0901 PF10442 WS0901 WS0902 PF16576 WS0902 WS0903 PF00873 AcrB/AcrD/AcrF family WS0904 PF02321 Outer membrane efflux protein WS0905 PF00440 Bacterial regulatory proteins, tetR family WS0906 PF05940 WS0906 WS0907 PF00005 ABC transporter WS0908 PF00528 Binding-protein-dependent transport system inner membrane component WS0910 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein WS0911 PF00593 TonB dependent receptor WS0911 PF07715 TonB-dependent Receptor Plug Domain WS0913 PF00027 Cyclic nucleotide-binding domain WS0913 PF13545 Crp-like helix-turn-helix domain WS0915 PF00665 Integrase core domain WS0915 PF01527 Transposase WS0915 PF13276 WS0915 WS0916 PF00034 Cytochrome c WS0916 PF13473 Cupredoxin-like domain WS0919 PF05048 Periplasmic copper-binding protein (NosD) WS0920 PF12838 4Fe-4S dicluster domain WS0923 PF12801 WS0923 WS0924 PF00005 ABC transporter WS0925 PF05573 NosL WS0926 PF12679 WS0926 WS0927 PF05573 NosL WS0929 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0930 PF00892 EamA-like transporter family WS0931 PF01914 WS0931 WS0932 PF00501 AMP-binding enzyme WS0932 PF14535 AMP-binding enzyme C-terminal domain WS0933 PF01842 ACT domain WS0934 PF00072 Response regulator receiver domain WS0934 PF00486 Transcriptional regulatory protein, C terminal WS0935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0935 PF14827 Sensory domain of two-component sensor kinase WS0936 PF12800 4Fe-4S binding domain WS0936 PF13247 4Fe-4S dicluster domain WS0937 PF03916 WS0937 WS0938 PF00384 Molybdopterin oxidoreductase WS0938 PF01568 Molydopterin dinucleotide binding domain WS0939 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0939 PF12729 WS0939 WS0940 PF00563 EAL domain WS0940 PF00990 GGDEF domain WS0940 PF13426 PAS domain WS0941 PF01381 Helix-turn-helix WS0942 PF07690 Major Facilitator Superfamily WS0943 PF00563 EAL domain WS0943 PF00571 CBS domain WS0943 PF00990 GGDEF domain WS0944 PF12849 PBP superfamily domain WS0945 PF00005 ABC transporter WS0946 PF00528 Binding-protein-dependent transport system inner membrane component WS0946 PF11812 WS0946 WS0947 PF00528 Binding-protein-dependent transport system inner membrane component WS0947 PF12501 WS0947 WS0948 PF12849 PBP superfamily domain WS0949 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS0950 PF00072 Response regulator receiver domain WS0950 PF00486 Transcriptional regulatory protein, C terminal WS0951 PF00512 His Kinase A (phospho-acceptor) domain WS0951 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0953 PF01256 Carbohydrate kinase WS0953 PF03853 YjeF-related protein N-terminus WS0954 PF05690 Thiazole biosynthesis protein ThiG WS0955 PF04023 FeoA domain WS0956 PF02421 Ferrous iron transport protein B WS0956 PF07664 WS0956 WS0956 PF07670 Nucleoside recognition WS0959 PF00665 Integrase core domain WS0959 PF01527 Transposase WS0959 PF13276 WS0959 WS0960 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB WS0960 PF08479 POTRA domain, ShlB-type WS0960 PF17287 WS0960 WS0963 PF00465 Iron-containing alcohol dehydrogenase WS0964 PF00571 CBS domain WS0964 PF00990 GGDEF domain WS0964 PF08447 PAS fold WS0964 PF13426 PAS domain WS0965 PF00563 EAL domain WS0965 PF00990 GGDEF domain WS0968 PF01578 WS0968 WS0968 PF05140 WS0968 WS0969 PF02335 Cytochrome c552 WS0970 PF03264 NapC/NirT cytochrome c family, N-terminal region WS0971 PF06723 MreB/Mbl protein WS0972 PF02578 Multi-copper polyphenol oxidoreductase laccase WS0973 PF02659 WS0973 WS0974 PF00072 Response regulator receiver domain WS0974 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0975 PF00072 Response regulator receiver domain WS0975 PF00512 His Kinase A (phospho-acceptor) domain WS0975 PF00989 PAS fold WS0975 PF01590 GAF domain WS0975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS0975 PF13426 PAS domain WS0976 PF00583 Acetyltransferase (GNAT) family WS0977 PF00005 ABC transporter WS0978 PF00005 ABC transporter WS0979 PF00528 Binding-protein-dependent transport system inner membrane component WS0981 PF00528 Binding-protein-dependent transport system inner membrane component WS0982 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WS0983 PF03573 outer membrane porin, OprD family WS0984 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WS0985 PF00528 Binding-protein-dependent transport system inner membrane component WS0986 PF00528 Binding-protein-dependent transport system inner membrane component WS0987 PF00005 ABC transporter WS0988 PF00005 ABC transporter WS0989 PF01554 MatE WS0990 PF02311 AraC-like ligand binding domain WS0990 PF12833 Helix-turn-helix domain WS0993 PF00593 TonB dependent receptor WS0993 PF07715 TonB-dependent Receptor Plug Domain WS0994 PF02597 ThiS family WS0995 PF04752 WS0995 WS0995 PF15956 WS0995 WS0996 PF00924 Mechanosensitive ion channel WS0997 PF00586 AIR synthase related protein, N-terminal domain WS0997 PF02769 AIR synthase related protein, C-terminal domain WS1001 PF01206 Sulfurtransferase TusA WS1001 PF02635 DsrE/DsrF-like family WS1002 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1002 PF08376 Nitrate and nitrite sensing WS1003 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases WS1003 PF13241 Putative NAD(P)-binding WS1003 PF14824 Sirohaem biosynthesis protein central WS1004 PF01077 Nitrite and sulphite reductase 4Fe-4S domain WS1004 PF01206 Sulfurtransferase TusA WS1004 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain WS1005 PF14464 Prokaryotic homologs of the JAB domain WS1006 PF00899 ThiF family WS1007 PF02597 ThiS family WS1008 PF00009 Elongation factor Tu GTP binding domain WS1008 PF03143 Elongation factor Tu C-terminal domain WS1009 PF01507 Phosphoadenosine phosphosulfate reductase family WS1010 PF01507 Phosphoadenosine phosphosulfate reductase family WS1011 PF09834 WS1011 WS1012 PF01053 Cys/Met metabolism PLP-dependent enzyme WS1013 PF13649 Methyltransferase domain WS1014 PF07690 Major Facilitator Superfamily WS1015 PF01053 Cys/Met metabolism PLP-dependent enzyme WS1016 PF01709 Transcriptional regulator WS1018 PF07238 PilZ domain WS1019 PF00216 Bacterial DNA-binding protein WS1021 PF00072 Response regulator receiver domain WS1021 PF00563 EAL domain WS1021 PF00990 GGDEF domain WS1021 PF08447 PAS fold WS1022 PF00665 Integrase core domain WS1022 PF01527 Transposase WS1022 PF13276 WS1022 WS1024 PF00563 EAL domain WS1026 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WS1026 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WS1027 PF00342 Phosphoglucose isomerase WS1028 PF00365 Phosphofructokinase WS1029 PF13380 CoA binding domain WS1029 PF13549 ATP-grasp domain WS1029 PF13607 Succinyl-CoA ligase like flavodoxin domain WS1030 PF00162 Phosphoglycerate kinase WS1032 PF01544 CorA-like Mg2+ transporter protein WS1033 PF00072 Response regulator receiver domain WS1033 PF05732 WS1033 WS1034 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1035 PF13458 Periplasmic binding protein WS1037 PF00999 Sodium/hydrogen exchanger family WS1037 PF02254 TrkA-N domain WS1038 PF01432 Peptidase family M3 WS1038 PF08439 Oligopeptidase F WS1043 PF03091 CutA1 divalent ion tolerance protein WS1044 PF00296 Luciferase-like monooxygenase WS1045 PF01475 Ferric uptake regulator family WS1046 PF01297 Periplasmic solute binding protein family WS1047 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1047 PF12729 WS1047 WS1050 PF00551 Formyl transferase WS1053 PF00771 FHIPEP family WS1054 PF00312 Ribosomal protein S15 WS1055 PF03544 Gram-negative bacterial TonB protein C-terminal WS1058 PF01052 Surface presentation of antigens (SPOA) WS1059 PF13690 Chemotaxis phosphatase CheX WS1060 PF00730 HhH-GPD superfamily base excision DNA repair protein WS1060 PF10576 Iron-sulfur binding domain of endonuclease III WS1061 PF03486 HI0933-like protein WS1062 PF13109 WS1062 WS1062 PF13116 WS1062 WS1063 PF02618 YceG-like family WS1064 PF00056 lactate/malate dehydrogenase, NAD binding domain WS1064 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain WS1065 PF00549 CoA-ligase WS1065 PF08442 ATP-grasp domain WS1066 PF00549 CoA-ligase WS1066 PF02629 CoA binding domain WS1067 PF12838 4Fe-4S dicluster domain WS1068 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg WS1068 PF17147 WS1068 WS1069 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WS1070 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase WS1071 PF00692 dUTPase WS1072 PF00364 Biotin-requiring enzyme WS1074 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain WS1074 PF02785 Biotin carboxylase C-terminal domain WS1074 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WS1075 PF00669 Bacterial flagellin N-terminal helical region WS1075 PF00700 Bacterial flagellin C-terminal helical region WS1076 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family WS1077 PF00072 Response regulator receiver domain WS1078 PF01584 CheW-like domain WS1080 PF01627 Hpt domain WS1081 PF00665 Integrase core domain WS1081 PF01527 Transposase WS1081 PF13276 WS1081 WS1085 PF00589 Phage integrase family WS1089 PF13154 WS1089 WS1089 PF13155 Toprim-like WS1091 PF02534 Type IV secretory system Conjugative DNA transfer WS1092 PF00437 Type II/IV secretion system protein WS1094 PF03743 Bacterial conjugation TrbI-like protein WS1095 PF03524 Conjugal transfer protein WS1096 PF04335 VirB8 protein WS1098 PF04610 WS1098 WS1099 PF03135 WS1099 WS1101 PF04956 WS1101 WS1102 PF10881 WS1102 WS1102 PF13086 AAA domain WS1102 PF13087 AAA domain WS1104 PF03432 WS1104 WS1105 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain WS1108 PF00665 Integrase core domain WS1108 PF01527 Transposase WS1108 PF13276 WS1108 WS1109 PF12833 Helix-turn-helix domain WS1110 PF09084 NMT1/THI5 like WS1111 PF00528 Binding-protein-dependent transport system inner membrane component WS1112 PF00005 ABC transporter WS1113 PF09347 Domain of unknown function (DUF1989) WS1114 PF09347 Domain of unknown function (DUF1989) WS1115 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain WS1115 PF00364 Biotin-requiring enzyme WS1115 PF02626 Allophanate hydrolase subunit 2 WS1115 PF02682 Allophanate hydrolase subunit 1 WS1115 PF02785 Biotin carboxylase C-terminal domain WS1115 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WS1117 PF00892 EamA-like transporter family WS1118 PF01425 Amidase WS1120 PF01022 Bacterial regulatory protein, arsR family WS1121 PF00122 E1-E2 ATPase WS1121 PF00403 Heavy-metal-associated domain WS1121 PF00702 haloacid dehalogenase-like hydrolase WS1123 PF01032 FecCD transport family WS1124 PF00005 ABC transporter WS1125 PF01497 Periplasmic binding protein WS1126 PF00593 TonB dependent receptor WS1126 PF07715 TonB-dependent Receptor Plug Domain WS1127 PF13649 Methyltransferase domain WS1128 PF03544 Gram-negative bacterial TonB protein C-terminal WS1129 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) WS1129 PF04851 Type III restriction enzyme, res subunit WS1129 PF12008 Type I restriction and modification enzyme - subunit R C terminal WS1132 PF02661 Fic/DOC family WS1134 PF01420 Type I restriction modification DNA specificity domain WS1135 PF10543 WS1135 WS1136 PF02384 N-6 DNA Methylase WS1136 PF12161 HsdM N-terminal domain WS1138 PF02537 WS1138 WS1139 PF02641 Uncharacterized ACR, COG1993 WS1143 PF13187 4Fe-4S dicluster domain WS1143 PF13237 4Fe-4S dicluster domain WS1144 PF02613 Nitrate reductase delta subunit WS1146 PF00384 Molybdopterin oxidoreductase WS1146 PF01568 Molydopterin dinucleotide binding domain WS1146 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS1147 PF13247 4Fe-4S dicluster domain WS1148 PF01292 Prokaryotic cytochrome b561 WS1149 PF02634 FdhD/NarQ family WS1150 PF05163 DinB family WS1151 PF02169 LPP20 lipoprotein WS1154 PF01810 WS1154 WS1155 PF02311 AraC-like ligand binding domain WS1155 PF12833 Helix-turn-helix domain WS1156 PF04016 Domain of unknown function (DUF364) WS1157 PF00005 ABC transporter WS1157 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WS1158 PF00528 Binding-protein-dependent transport system inner membrane component WS1159 PF00528 Binding-protein-dependent transport system inner membrane component WS1160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WS1161 PF09925 WS1161 WS1162 PF14345 WS1162 WS1163 PF05488 PAAR motif WS1166 PF02525 Flavodoxin-like fold WS1167 PF01638 HxlR-like helix-turn-helix WS1168 PF01638 HxlR-like helix-turn-helix WS1169 PF03358 NADPH-dependent FMN reductase WS1170 PF03927 NapD protein WS1172 PF00037 4Fe-4S binding domain WS1172 PF13187 4Fe-4S dicluster domain WS1174 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) WS1176 PF12801 WS1176 WS1176 PF13237 4Fe-4S dicluster domain WS1177 PF12838 4Fe-4S dicluster domain WS1178 PF00384 Molybdopterin oxidoreductase WS1178 PF01568 Molydopterin dinucleotide binding domain WS1178 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS1178 PF10518 TAT (twin-arginine translocation) pathway signal sequence WS1179 PF01925 WS1179 WS1180 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term WS1181 PF00027 Cyclic nucleotide-binding domain WS1181 PF13545 Crp-like helix-turn-helix domain WS1183 PF03063 Prismane/CO dehydrogenase family WS1186 PF04332 WS1186 WS1187 PF00330 Aconitase family (aconitate hydratase) WS1187 PF06434 Aconitate hydratase 2 N-terminus WS1187 PF11791 Aconitate B N-terminal domain WS1188 PF00291 Pyridoxal-phosphate dependent enzyme WS1189 PF00266 Aminotransferase class-V WS1190 PF01814 Hemerythrin HHE cation binding domain WS1191 PF10006 WS1191 WS1193 PF00027 Cyclic nucleotide-binding domain WS1193 PF13545 Crp-like helix-turn-helix domain WS1194 PF00925 GTP cyclohydrolase II WS1195 PF00994 Probable molybdopterin binding domain WS1195 PF03453 MoeA N-terminal region (domain I and II) WS1195 PF03454 MoeA C-terminal region (domain IV) WS1196 PF02597 ThiS family WS1197 PF02391 MoaE protein WS1198 PF03205 Molybdopterin guanine dinucleotide synthesis protein B WS1199 PF00994 Probable molybdopterin binding domain WS1200 PF01967 MoaC family WS1201 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS1201 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster WS1202 PF00310 Glutamine amidotransferases class-II WS1202 PF01493 GXGXG motif WS1202 PF01645 Conserved region in glutamate synthase WS1202 PF04898 Glutamate synthase central domain WS1205 PF00990 GGDEF domain WS1205 PF08269 Cache domain WS1205 PF08447 PAS fold WS1207 PF00512 His Kinase A (phospho-acceptor) domain WS1207 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1208 PF00072 Response regulator receiver domain WS1208 PF00486 Transcriptional regulatory protein, C terminal WS1209 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1209 PF17201 WS1209 WS1210 PF00226 DnaJ domain WS1210 PF05099 Tellurite resistance protein TerB WS1212 PF01739 CheR methyltransferase, SAM binding domain WS1212 PF03705 CheR methyltransferase, all-alpha domain WS1213 PF01339 CheB methylesterase WS1215 PF01205 Uncharacterized protein family UPF0029 WS1216 PF03653 WS1216 WS1217 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1217 PF17200 WS1217 WS1218 PF00206 Lyase WS1218 PF14698 Argininosuccinate lyase C-terminal WS1219 PF02566 OsmC-like protein WS1220 PF01209 ubiE/COQ5 methyltransferase family WS1221 PF00589 Phage integrase family WS1222 PF00925 GTP cyclohydrolase II WS1222 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase WS1223 PF06629 WS1223 WS1224 PF00440 Bacterial regulatory proteins, tetR family WS1224 PF13972 Bacterial transcriptional repressor WS1225 PF01227 GTP cyclohydrolase I WS1226 PF01435 Peptidase family M48 WS1227 PF01142 tRNA pseudouridine synthase D (TruD) WS1229 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1230 PF00665 Integrase core domain WS1230 PF01527 Transposase WS1230 PF13276 WS1230 WS1232 PF00593 TonB dependent receptor WS1232 PF07715 TonB-dependent Receptor Plug Domain WS1234 PF00809 Pterin binding enzyme WS1234 PF02310 B12 binding domain WS1234 PF02574 Homocysteine S-methyltransferase WS1234 PF02607 B12 binding domain WS1234 PF02965 Vitamin B12 dependent methionine synthase, activation domain WS1236 PF03167 Uracil DNA glycosylase superfamily WS1238 PF13277 YmdB-like protein WS1239 PF00270 DEAD/DEAH box helicase WS1239 PF00271 Helicase conserved C-terminal domain WS1239 PF02559 CarD-like/TRCF domain WS1239 PF03461 TRCF domain WS1240 PF04519 WS1240 WS1241 PF01551 Peptidase family M23 WS1242 PF08245 Mur ligase middle domain WS1243 PF00990 GGDEF domain WS1244 PF04390 Lipopolysaccharide-assembly WS1245 PF00133 tRNA synthetases class I (I, L, M and V) WS1245 PF09334 tRNA synthetases class I (M) WS1245 PF13603 Leucyl-tRNA synthetase, Domain 2 WS1247 PF02355 Protein export membrane protein WS1247 PF07549 SecD/SecF GG Motif WS1248 PF02355 Protein export membrane protein WS1249 PF02699 Preprotein translocase subunit WS1251 PF06965 Na+/H+ antiporter 1 WS1252 PF00580 UvrD/REP helicase N-terminal domain WS1252 PF13361 UvrD-like helicase C-terminal domain WS1253 PF00226 DnaJ domain WS1253 PF01556 DnaJ C terminal domain WS1254 PF13411 MerR HTH family regulatory protein WS1256 PF00004 ATPase family associated with various cellular activities (AAA) WS1256 PF12002 MgsA AAA+ ATPase C terminal WS1256 PF16193 WS1256 WS1257 PF03548 Outer membrane lipoprotein carrier protein LolA WS1258 PF00271 Helicase conserved C-terminal domain WS1258 PF01043 SecA preprotein cross-linking domain WS1258 PF02810 SEC-C motif WS1258 PF07516 SecA Wing and Scaffold domain WS1258 PF07517 SecA DEAD-like domain WS1259 PF02687 WS1259 WS1259 PF12704 MacB-like periplasmic core domain WS1260 PF04359 Protein of unknown function (DUF493) WS1261 PF03061 Thioesterase superfamily WS1262 PF00665 Integrase core domain WS1262 PF01527 Transposase WS1262 PF13276 WS1262 WS1263 PF00593 TonB dependent receptor WS1264 PF00005 ABC transporter WS1264 PF00664 ABC transporter transmembrane region WS1265 PF00005 ABC transporter WS1265 PF00664 ABC transporter transmembrane region WS1266 PF07690 Major Facilitator Superfamily WS1267 PF07690 Major Facilitator Superfamily WS1268 PF02659 WS1268 WS1269 PF02321 Outer membrane efflux protein WS1270 PF13437 HlyD family secretion protein WS1270 PF13533 Biotin-lipoyl like WS1271 PF00873 AcrB/AcrD/AcrF family WS1272 PF00586 AIR synthase related protein, N-terminal domain WS1273 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain WS1273 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain WS1274 PF02445 Quinolinate synthetase A protein WS1275 PF02666 WS1275 WS1276 PF04376 WS1276 WS1276 PF04377 WS1276 WS1277 PF01464 Transglycosylase SLT domain WS1277 PF11873 Domain of unknown function (DUF3393) WS1278 PF01965 DJ-1/PfpI family WS1279 PF01132 Elongation factor P (EF-P) OB domain WS1279 PF08207 Elongation factor P (EF-P) KOW-like domain WS1279 PF09285 Elongation factor P, C-terminal WS1280 PF01116 Fructose-bisphosphate aldolase class-II WS1281 PF13616 PPIC-type PPIASE domain WS1282 PF10947 WS1282 WS1283 PF07264 Etoposide-induced protein 2 WS1284 PF01926 50S ribosome-binding GTPase WS1284 PF10396 GTP-binding protein TrmE N-terminus WS1284 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE WS1285 PF14804 Jag N-terminus WS1286 PF02096 60Kd inner membrane protein WS1286 PF14849 YidC periplasmic domain WS1287 PF01809 WS1287 WS1289 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain WS1289 PF02785 Biotin carboxylase C-terminal domain WS1289 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WS1290 PF02673 WS1290 WS1291 PF03734 L,D-transpeptidase catalytic domain WS1292 PF01926 50S ribosome-binding GTPase WS1292 PF07650 KH domain WS1293 PF07724 AAA domain (Cdc48 subfamily) WS1293 PF10431 C-terminal, D2-small domain, of ClpB protein WS1294 PF00227 Proteasome subunit WS1295 PF01281 Ribosomal protein L9, N-terminal domain WS1295 PF03948 Ribosomal protein L9, C-terminal domain WS1296 PF02943 Ferredoxin thioredoxin reductase catalytic beta chain WS1298 PF01863 Protein of unknown function DUF45 WS1299 PF00011 Hsp20/alpha crystallin family WS1300 PF00171 Aldehyde dehydrogenase family WS1301 PF01235 WS1301 WS1302 PF04551 GcpE protein WS1304 PF00072 Response regulator receiver domain WS1304 PF13426 PAS domain WS1305 PF00400 WD domain, G-beta repeat WS1306 PF01230 HIT domain WS1307 PF01409 tRNA synthetases class II core domain (F) WS1307 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain WS1308 PF01588 Putative tRNA binding domain WS1308 PF03147 Ferredoxin-fold anticodon binding domain WS1308 PF03484 tRNA synthetase B5 domain WS1309 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WS1310 PF02401 LytB protein WS1311 PF00575 S1 RNA binding domain WS1313 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain WS1313 PF01842 ACT domain WS1313 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WS1314 PF17402 WS1314 WS1315 PF00950 WS1315 WS1316 PF00005 ABC transporter WS1317 PF00877 NlpC/P60 family WS1317 PF12912 NLPC_P60 stabilising domain, N term WS1317 PF12913 SH3 domain of the SH3b1 type WS1317 PF12914 SH3 domain of SH3b2 type WS1318 PF03960 ArsC family WS1319 PF05437 WS1319 WS1320 PF03591 WS1320 WS1321 PF00939 Sodium:sulfate symporter transmembrane region WS1322 PF01435 Peptidase family M48 WS1323 PF01451 Low molecular weight phosphotyrosine protein phosphatase WS1325 PF00149 Calcineurin-like phosphoesterase WS1327 PF00581 Rhodanese-like domain WS1328 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1328 PF08447 PAS fold WS1328 PF13426 PAS domain WS1328 PF14827 Sensory domain of two-component sensor kinase WS1329 PF04402 Protein of unknown function (DUF541) WS1330 PF01810 WS1330 WS1333 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1333 PF02743 Cache domain WS1336 PF13566 WS1336 WS1337 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1337 PF13682 Chemoreceptor zinc-binding domain WS1338 PF08447 PAS fold WS1339 PF00072 Response regulator receiver domain WS1340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1340 PF08448 PAS fold WS1342 PF00999 Sodium/hydrogen exchanger family WS1344 PF13442 Cytochrome C oxidase, cbb3-type, subunit III WS1345 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain WS1345 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain WS1346 PF00717 Peptidase S24-like WS1348 PF02502 Ribose/Galactose Isomerase WS1350 PF00156 Phosphoribosyl transferase domain WS1351 PF00291 Pyridoxal-phosphate dependent enzyme WS1352 PF09335 WS1352 WS1353 PF00883 Cytosol aminopeptidase family, catalytic domain WS1353 PF02789 Cytosol aminopeptidase family, N-terminal domain WS1354 PF01926 50S ribosome-binding GTPase WS1354 PF06071 Protein of unknown function (DUF933) WS1355 PF13186 Iron-sulfur cluster-binding domain WS1357 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region WS1361 PF00665 Integrase core domain WS1361 PF01527 Transposase WS1361 PF13276 WS1361 WS1364 PF00665 Integrase core domain WS1364 PF01527 Transposase WS1364 PF13276 WS1364 WS1365 PF07690 Major Facilitator Superfamily WS1366 PF00350 Dynamin family WS1367 PF00350 Dynamin family WS1370 PF12849 PBP superfamily domain WS1371 PF00528 Binding-protein-dependent transport system inner membrane component WS1372 PF00005 ABC transporter WS1374 PF02915 Rubrerythrin WS1374 PF06397 Desulfoferrodoxin, N-terminal domain WS1375 PF00072 Response regulator receiver domain WS1375 PF00512 His Kinase A (phospho-acceptor) domain WS1375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1375 PF13426 PAS domain WS1376 PF00072 Response regulator receiver domain WS1378 PF02080 TrkA-C domain WS1378 PF02254 TrkA-N domain WS1379 PF02386 Cation transport protein WS1381 PF00309 WS1381 WS1381 PF04552 Sigma-54, DNA binding domain WS1381 PF04963 Sigma-54 factor, core binding domain WS1382 PF00111 2Fe-2S iron-sulfur cluster binding domain WS1383 PF04319 WS1383 WS1384 PF03206 WS1384 WS1385 PF14697 4Fe-4S dicluster domain WS1386 PF03270 Protein of unknown function, DUF269 WS1387 PF02579 Dinitrogenase iron-molybdenum cofactor WS1388 PF00148 Nitrogenase component 1 type Oxidoreductase WS1390 PF00148 Nitrogenase component 1 type Oxidoreductase WS1391 PF00148 Nitrogenase component 1 type Oxidoreductase WS1391 PF11844 Domain of unknown function (DUF3364) WS1392 PF00148 Nitrogenase component 1 type Oxidoreductase WS1394 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family WS1396 PF00682 HMGL-like WS1397 PF02579 Dinitrogenase iron-molybdenum cofactor WS1397 PF04055 Radical SAM superfamily WS1398 PF00248 Aldo/keto reductase family WS1399 PF00890 FAD binding domain WS1399 PF02910 Fumarate reductase flavoprotein C-term WS1400 PF06988 NifT/FixU protein WS1402 PF04891 WS1402 WS1403 PF06689 ClpX C4-type zinc finger WS1403 PF07724 AAA domain (Cdc48 subfamily) WS1403 PF10431 C-terminal, D2-small domain, of ClpB protein WS1404 PF00158 Sigma-54 interaction domain WS1404 PF02954 Bacterial regulatory protein, Fis family WS1404 PF13185 GAF domain WS1405 PF02086 D12 class N6 adenine-specific DNA methyltransferase WS1406 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1406 PF02743 Cache domain WS1407 PF13840 ACT domain WS1409 PF03929 WS1409 WS1412 PF02421 Ferrous iron transport protein B WS1412 PF07664 WS1412 WS1412 PF07670 Nucleoside recognition WS1413 PF04023 FeoA domain WS1416 PF00593 TonB dependent receptor WS1416 PF07715 TonB-dependent Receptor Plug Domain WS1417 PF02321 Outer membrane efflux protein WS1418 PF00005 ABC transporter WS1418 PF02687 WS1418 WS1418 PF12704 MacB-like periplasmic core domain WS1419 PF16576 WS1419 WS1421 PF00593 TonB dependent receptor WS1421 PF07660 Secretin and TonB N terminus short domain WS1421 PF07715 TonB-dependent Receptor Plug Domain WS1422 PF04773 FecR protein WS1422 PF16220 WS1422 WS1423 PF04542 Sigma-70 region 2 WS1423 PF08281 Sigma-70, region 4 WS1425 PF00593 TonB dependent receptor WS1425 PF07715 TonB-dependent Receptor Plug Domain WS1426 PF03544 Gram-negative bacterial TonB protein C-terminal WS1427 PF02472 Biopolymer transport protein ExbD/TolR WS1429 PF01618 WS1429 WS1430 PF00384 Molybdopterin oxidoreductase WS1430 PF01568 Molydopterin dinucleotide binding domain WS1430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS1431 PF12800 4Fe-4S binding domain WS1431 PF13247 4Fe-4S dicluster domain WS1432 PF04976 WS1432 WS1433 PF02613 Nitrate reductase delta subunit WS1434 PF00072 Response regulator receiver domain WS1434 PF00486 Transcriptional regulatory protein, C terminal WS1435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WS1436 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1441 PF02219 Methylenetetrahydrofolate reductase WS1442 PF02384 N-6 DNA Methylase WS1443 PF09827 CRISPR associated protein Cas2 WS1444 PF01867 CRISPR associated protein Cas1 WS1445 PF13395 HNH endonuclease WS1449 PF03129 Anticodon binding domain WS1449 PF13393 Histidyl-tRNA synthetase WS1450 PF01075 Glycosyltransferase family 9 (heptosyltransferase) WS1451 PF00403 Heavy-metal-associated domain WS1452 PF01474 Class-II DAHP synthetase family WS1453 PF00285 Citrate synthase WS1454 PF00180 Isocitrate/isopropylmalate dehydrogenase WS1458 PF01936 NYN domain WS1458 PF12872 OST-HTH/LOTUS domain WS1459 PF01734 Patatin-like phospholipase WS1461 PF01361 Tautomerase enzyme WS1462 PF05728 Uncharacterised protein family (UPF0227) WS1463 PF00072 Response regulator receiver domain WS1463 PF00486 Transcriptional regulatory protein, C terminal WS1464 PF00512 His Kinase A (phospho-acceptor) domain WS1464 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1465 PF02646 WS1465 WS1466 PF00005 ABC transporter WS1467 PF00005 ABC transporter WS1467 PF12399 Branched-chain amino acid ATP-binding cassette transporter WS1468 PF02653 WS1468 WS1470 PF02653 WS1470 WS1471 PF13458 Periplasmic binding protein WS1472 PF00588 SpoU rRNA Methylase family WS1475 PF00551 Formyl transferase WS1476 PF01343 Peptidase family S49 WS1477 PF01979 Amidohydrolase family WS1478 PF00924 Mechanosensitive ion channel WS1478 PF05552 Conserved TM helix WS1479 PF01979 Amidohydrolase family WS1481 PF02683 WS1481 WS1482 PF00270 DEAD/DEAH box helicase WS1482 PF00271 Helicase conserved C-terminal domain WS1483 PF00155 Aminotransferase class I and II WS1484 PF01225 Mur ligase family, catalytic domain WS1484 PF02875 Mur ligase family, glutamate ligase domain WS1484 PF08245 Mur ligase middle domain WS1486 PF00488 MutS domain V WS1486 PF01713 Smr domain WS1488 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain WS1489 PF01313 WS1489 WS1491 PF00034 Cytochrome c WS1491 PF03150 Di-haem cytochrome c peroxidase WS1492 PF02621 Menaquinone biosynthesis WS1493 PF00154 recA bacterial DNA recombination protein WS1494 PF00113 Enolase, C-terminal TIM barrel domain WS1494 PF03952 Enolase, N-terminal domain WS1496 PF11741 AMIN domain WS1497 PF01202 Shikimate kinase WS1498 PF00226 DnaJ domain WS1499 PF03631 WS1499 WS1500 PF04055 Radical SAM superfamily WS1500 PF06968 Biotin and Thiamin Synthesis associated domain WS1501 PF01131 DNA topoisomerase WS1501 PF01396 WS1501 WS1501 PF01751 Toprim domain WS1503 PF00669 Bacterial flagellin N-terminal helical region WS1503 PF00700 Bacterial flagellin C-terminal helical region WS1503 PF07196 Flagellin hook IN motif WS1507 PF00730 HhH-GPD superfamily base excision DNA repair protein WS1508 PF00881 Nitroreductase family WS1509 PF01546 Peptidase family M20/M25/M40 WS1510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1510 PF14827 Sensory domain of two-component sensor kinase WS1512 PF13682 Chemoreceptor zinc-binding domain WS1514 PF00004 ATPase family associated with various cellular activities (AAA) WS1514 PF01434 Peptidase family M41 WS1515 PF00919 Uncharacterized protein family UPF0004 WS1515 PF04055 Radical SAM superfamily WS1516 PF00924 Mechanosensitive ion channel WS1517 PF01761 3-dehydroquinate synthase WS1518 PF02080 TrkA-C domain WS1519 PF01702 Queuine tRNA-ribosyltransferase WS1520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1522 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1523 PF00072 Response regulator receiver domain WS1523 PF00486 Transcriptional regulatory protein, C terminal WS1525 PF13202 EF hand WS1525 PF13499 EF-hand domain pair WS1527 PF01814 Hemerythrin HHE cation binding domain WS1529 PF05683 Fumarase C-terminus WS1530 PF05681 WS1530 WS1533 PF00392 Bacterial regulatory proteins, gntR family WS1533 PF07729 FCD domain WS1534 PF13509 S1 domain WS1535 PF03831 PhnA protein WS1536 PF01435 Peptidase family M48 WS1538 PF05987 WS1538 WS1539 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain WS1540 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase WS1541 PF03061 Thioesterase superfamily WS1542 PF07681 WS1542 WS1543 PF13302 Acetyltransferase (GNAT) domain WS1544 PF00875 DNA photolyase WS1544 PF03441 FAD binding domain of DNA photolyase WS1545 PF04463 WS1545 WS1545 PF08349 WS1545 WS1546 PF02374 Anion-transporting ATPase WS1548 PF02554 WS1548 WS1548 PF13722 WS1548 WS1549 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein WS1550 PF00005 ABC transporter WS1552 PF00528 Binding-protein-dependent transport system inner membrane component WS1553 PF00528 Binding-protein-dependent transport system inner membrane component WS1554 PF13242 HAD-hyrolase-like WS1554 PF13344 Haloacid dehalogenase-like hydrolase WS1555 PF13489 Methyltransferase domain WS1556 PF00563 EAL domain WS1556 PF00990 GGDEF domain WS1556 PF13426 PAS domain WS1557 PF08534 Redoxin WS1558 PF00578 AhpC/TSA family WS1559 PF00005 ABC transporter WS1560 PF02687 WS1560 WS1561 PF02687 WS1561 WS1561 PF12704 MacB-like periplasmic core domain WS1562 PF04945 YHS domain WS1562 PF10080 WS1562 WS1564 PF10634 Fe2+ transport protein WS1566 PF03239 WS1566 WS1568 PF00990 GGDEF domain WS1571 PF00122 E1-E2 ATPase WS1571 PF00702 haloacid dehalogenase-like hydrolase WS1577 PF13609 Gram-negative porin WS1578 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain WS1578 PF03900 Porphobilinogen deaminase, C-terminal domain WS1579 PF04186 WS1579 WS1580 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WS1580 PF03129 Anticodon binding domain WS1580 PF04073 Aminoacyl-tRNA editing domain WS1581 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain WS1581 PF01488 Shikimate / quinate 5-dehydrogenase WS1581 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain WS1582 PF00348 Polyprenyl synthetase WS1584 PF09442 Domain of unknown function (DUF2018) WS1585 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain WS1585 PF02777 Iron/manganese superoxide dismutases, C-terminal domain WS1587 PF00815 Histidinol dehydrogenase WS1588 PF00571 CBS domain WS1588 PF01595 WS1588 WS1589 PF00210 Ferritin-like domain WS1590 PF00512 His Kinase A (phospho-acceptor) domain WS1590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1591 PF10135 WS1591 WS1592 PF02119 WS1592 WS1597 PF03575 Peptidase family S51 WS1598 PF04371 Porphyromonas-type peptidyl-arginine deiminase WS1600 PF00814 Glycoprotease family WS1601 PF08534 Redoxin WS1602 PF02602 Uroporphyrinogen-III synthase HemD WS1603 PF00117 Glutamine amidotransferase class-I WS1603 PF00958 GMP synthase C terminal domain WS1604 PF00890 FAD binding domain WS1607 PF01541 GIY-YIG catalytic domain WS1607 PF02151 UvrB/uvrC motif WS1607 PF08459 UvrC Helix-hairpin-helix N-terminal WS1608 PF12833 Helix-turn-helix domain WS1610 PF00593 TonB dependent receptor WS1610 PF07715 TonB-dependent Receptor Plug Domain WS1611 PF12900 Pyridoxamine 5'-phosphate oxidase WS1612 PF12833 Helix-turn-helix domain WS1613 PF01844 HNH endonuclease WS1615 PF01867 CRISPR associated protein Cas1 WS1616 PF09827 CRISPR associated protein Cas2 WS1617 PF01930 Domain of unknown function DUF83 WS1621 PF05670 WS1621 WS1621 PF05833 Fibronectin-binding protein A N-terminus (FbpA) WS1622 PF02463 RecF/RecN/SMC N terminal domain WS1623 PF01513 ATP-NAD kinase WS1625 PF00226 DnaJ domain WS1626 PF01925 WS1626 WS1628 PF00005 ABC transporter WS1629 PF00581 Rhodanese-like domain WS1630 PF01590 GAF domain WS1630 PF01966 HD domain WS1630 PF12706 Beta-lactamase superfamily domain WS1631 PF04773 FecR protein WS1632 PF04575 WS1632 WS1632 PF12895 Anaphase-promoting complex, cyclosome, subunit 3 WS1633 PF00211 Adenylate and Guanylate cyclase catalytic domain WS1633 PF05226 WS1633 WS1634 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD WS1635 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase WS1635 PF14572 Phosphoribosyl synthetase-associated domain WS1636 PF03054 tRNA methyl transferase WS1637 PF01052 Surface presentation of antigens (SPOA) WS1638 PF01052 Surface presentation of antigens (SPOA) WS1638 PF02154 Flagellar motor switch protein FliM WS1639 PF04542 Sigma-70 region 2 WS1639 PF04545 Sigma-70, region 4 WS1641 PF10609 ParA/MinD ATPase like WS1642 PF00448 SRP54-type protein, GTPase domain WS1643 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) WS1644 PF00557 Metallopeptidase family M24 WS1645 PF01220 Dehydroquinase class II WS1646 PF02222 ATP-grasp domain WS1647 PF03486 HI0933-like protein WS1648 PF04073 Aminoacyl-tRNA editing domain WS1649 PF02384 N-6 DNA Methylase WS1649 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) WS1650 PF13245 Part of AAA domain WS1650 PF13361 UvrD-like helicase C-terminal domain WS1651 PF02623 FliW protein WS1652 PF00133 tRNA synthetases class I (I, L, M and V) WS1652 PF08264 Anticodon-binding domain of tRNA WS1652 PF10458 Valyl tRNA synthetase tRNA binding arm WS1653 PF14681 Uracil phosphoribosyltransferase WS1655 PF00009 Elongation factor Tu GTP binding domain WS1655 PF00679 Elongation factor G C-terminus WS1655 PF03144 Elongation factor Tu domain 2 WS1655 PF06421 GTP-binding protein LepA C-terminus WS1656 PF04055 Radical SAM superfamily WS1656 PF13394 4Fe-4S single cluster domain WS1657 PF06508 Queuosine biosynthesis protein QueC WS1659 PF01242 6-pyruvoyl tetrahydropterin synthase WS1660 PF00004 ATPase family associated with various cellular activities (AAA) WS1661 PF01545 Cation efflux family WS1661 PF16916 WS1661 WS1663 PF00905 Penicillin binding protein transpeptidase domain WS1663 PF03717 Penicillin-binding Protein dimerisation domain WS1664 PF02049 WS1664 WS1666 PF00460 Flagella basal body rod protein WS1666 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WS1667 PF00460 Flagella basal body rod protein WS1669 PF01098 WS1669 WS1670 PF00857 Isochorismatase family WS1671 PF13539 D-alanyl-D-alanine carboxypeptidase WS1672 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1673 PF08447 PAS fold WS1674 PF01554 MatE WS1675 PF00795 Carbon-nitrogen hydrolase WS1677 PF00899 ThiF family WS1678 PF01975 Survival protein SurE WS1679 PF00348 Polyprenyl synthetase WS1680 PF13180 PDZ domain WS1681 PF02575 YbaB/EbfC DNA-binding family WS1682 PF02261 Aspartate decarboxylase WS1684 PF01750 Hydrogenase maturation protease WS1685 PF01292 Prokaryotic cytochrome b561 WS1686 PF00374 Nickel-dependent hydrogenase WS1687 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WS1687 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal WS1688 PF02875 Mur ligase family, glutamate ligase domain WS1688 PF08245 Mur ligase middle domain WS1690 PF01106 NifU-like domain WS1691 PF01196 Ribosomal protein L17 WS1692 PF01000 RNA polymerase Rpb3/RpoA insert domain WS1692 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain WS1692 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain WS1693 PF00163 Ribosomal protein S4/S9 N-terminal domain WS1693 PF01479 S4 domain WS1694 PF00411 Ribosomal protein S11 WS1695 PF00416 Ribosomal protein S13/S18 WS1696 PF01176 Translation initiation factor 1A / IF-1 WS1697 PF00557 Metallopeptidase family M24 WS1698 PF00344 SecY translocase WS1699 PF00828 Ribosomal protein L18e/L15 WS1700 PF00333 Ribosomal protein S5, N-terminal domain WS1700 PF03719 Ribosomal protein S5, C-terminal domain WS1701 PF00861 Ribosomal L18p/L5e family WS1702 PF00347 Ribosomal protein L6 WS1703 PF00410 Ribosomal protein S8 WS1704 PF00281 Ribosomal protein L5 WS1704 PF00673 ribosomal L5P family C-terminus WS1705 PF00467 KOW motif WS1705 PF17136 WS1705 WS1706 PF00238 Ribosomal protein L14p/L23e WS1707 PF00366 Ribosomal protein S17 WS1709 PF00252 Ribosomal protein L16p/L10e WS1710 PF00189 Ribosomal protein S3, C-terminal domain WS1710 PF07650 KH domain WS1711 PF00237 Ribosomal protein L22p/L17e WS1712 PF00203 Ribosomal protein S19 WS1713 PF00181 Ribosomal Proteins L2, RNA binding domain WS1713 PF03947 Ribosomal Proteins L2, C-terminal domain WS1714 PF00276 Ribosomal protein L23 WS1715 PF00573 Ribosomal protein L4/L1 family WS1716 PF00297 Ribosomal protein L3 WS1718 PF01351 Ribonuclease HII WS1720 PF11391 WS1720 WS1722 PF04055 Radical SAM superfamily WS1723 PF00534 Glycosyl transferases group 1 WS1723 PF13439 Glycosyltransferase Family 4 WS1724 PF00149 Calcineurin-like phosphoesterase WS1725 PF02582 WS1725 WS1726 PF00072 Response regulator receiver domain WS1726 PF13487 HD domain WS1727 PF00072 Response regulator receiver domain WS1727 PF00497 Bacterial extracellular solute-binding proteins, family 3 WS1727 PF00512 His Kinase A (phospho-acceptor) domain WS1727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1729 PF00696 Amino acid kinase family WS1729 PF01842 ACT domain WS1729 PF13840 ACT domain WS1730 PF12163 DNA replication regulator WS1731 PF13177 DNA polymerase III, delta subunit WS1732 PF00809 Pterin binding enzyme WS1734 PF01381 Helix-turn-helix WS1737 PF00183 Hsp90 protein WS1737 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1738 PF00953 Glycosyl transferase family 4 WS1739 PF00665 Integrase core domain WS1739 PF01527 Transposase WS1739 PF13276 WS1739 WS1740 PF02535 WS1740 WS1741 PF03649 WS1741 WS1742 PF00999 Sodium/hydrogen exchanger family WS1742 PF02080 TrkA-C domain WS1744 PF00578 AhpC/TSA family WS1744 PF10417 C-terminal domain of 1-Cys peroxiredoxin WS1748 PF00174 Oxidoreductase molybdopterin binding domain WS1749 PF01794 WS1749 WS1750 PF02754 WS1750 WS1750 PF13534 4Fe-4S dicluster domain WS1751 PF04055 Radical SAM superfamily WS1751 PF06969 HemN C-terminal domain WS1752 PF10788 WS1752 WS1753 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WS1753 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WS1754 PF01261 Xylose isomerase-like TIM barrel WS1756 PF02169 LPP20 lipoprotein WS1757 PF01973 WS1757 WS1758 PF00460 Flagella basal body rod protein WS1758 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WS1758 PF07196 Flagellin hook IN motif WS1758 PF07559 Flagellar basal body protein FlaE WS1759 PF00460 Flagella basal body rod protein WS1759 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WS1760 PF03963 WS1760 WS1760 PF13860 FlgD Ig-like domain WS1761 PF02120 Flagellar hook-length control protein FliK WS1763 PF00009 Elongation factor Tu GTP binding domain WS1763 PF00679 Elongation factor G C-terminus WS1763 PF03144 Elongation factor Tu domain 2 WS1764 PF00317 Ribonucleotide reductase, all-alpha domain WS1764 PF02867 Ribonucleotide reductase, barrel domain WS1764 PF03477 ATP cone domain WS1765 PF02562 PhoH-like protein WS1765 PF13638 PIN domain WS1766 PF05681 WS1766 WS1767 PF05683 Fumarase C-terminus WS1768 PF03605 WS1768 WS1769 PF00919 Uncharacterized protein family UPF0004 WS1769 PF04055 Radical SAM superfamily WS1770 PF01171 PP-loop family WS1775 PF04028 WS1775 WS1776 PF00919 Uncharacterized protein family UPF0004 WS1776 PF01938 TRAM domain WS1776 PF04055 Radical SAM superfamily WS1778 PF08529 NusA N-terminal domain WS1778 PF13184 NusA-like KH domain WS1779 PF05538 WS1779 WS1780 PF05538 WS1780 WS1781 PF00152 tRNA synthetases class II (D, K and N) WS1781 PF01336 OB-fold nucleic acid binding domain WS1781 PF02938 GAD domain WS1782 PF00406 Adenylate kinase WS1783 PF00994 Probable molybdopterin binding domain WS1784 PF00719 Inorganic pyrophosphatase WS1785 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains WS1786 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains WS1787 PF00072 Response regulator receiver domain WS1787 PF01584 CheW-like domain WS1790 PF00533 BRCA1 C Terminus (BRCT) domain WS1790 PF01653 NAD-dependent DNA ligase adenylation domain WS1790 PF03119 NAD-dependent DNA ligase C4 zinc finger domain WS1790 PF03120 NAD-dependent DNA ligase OB-fold domain WS1790 PF12826 Helix-hairpin-helix motif WS1790 PF14520 Helix-hairpin-helix domain WS1792 PF01171 PP-loop family WS1793 PF07690 Major Facilitator Superfamily WS1795 PF01725 Ham1 family WS1798 PF00072 Response regulator receiver domain WS1798 PF00486 Transcriptional regulatory protein, C terminal WS1799 PF09335 WS1799 WS1801 PF00460 Flagella basal body rod protein WS1801 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WS1802 PF00460 Flagella basal body rod protein WS1802 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WS1803 PF00005 ABC transporter WS1804 PF00528 Binding-protein-dependent transport system inner membrane component WS1805 PF03459 TOBE domain WS1807 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain WS1807 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain WS1808 PF00528 Binding-protein-dependent transport system inner membrane component WS1809 PF13531 Bacterial extracellular solute-binding protein WS1810 PF13531 Bacterial extracellular solute-binding protein WS1811 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WS1811 PF03459 TOBE domain WS1812 PF00694 Aconitase C-terminal domain WS1813 PF00180 Isocitrate/isopropylmalate dehydrogenase WS1817 PF00072 Response regulator receiver domain WS1817 PF00486 Transcriptional regulatory protein, C terminal WS1818 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1819 PF01743 Poly A polymerase head domain WS1821 PF00490 Delta-aminolevulinic acid dehydratase WS1822 PF04972 BON domain WS1823 PF01810 WS1823 WS1824 PF01594 WS1824 WS1825 PF05491 Holliday junction DNA helicase ruvB C-terminus WS1825 PF05496 Holliday junction DNA helicase ruvB N-terminus WS1826 PF02548 Ketopantoate hydroxymethyltransferase WS1827 PF00290 Tryptophan synthase alpha chain WS1829 PF00441 Acyl-CoA dehydrogenase, C-terminal domain WS1829 PF02770 Acyl-CoA dehydrogenase, middle domain WS1829 PF02771 Acyl-CoA dehydrogenase, N-terminal domain WS1830 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein WS1831 PF01717 Cobalamin-independent synthase, Catalytic domain WS1832 PF02566 OsmC-like protein WS1833 PF02589 Uncharacterised ACR, YkgG family COG1556 WS1835 PF07450 WS1835 WS1836 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WS1837 PF12838 4Fe-4S dicluster domain WS1838 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit WS1838 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit WS1838 PF00374 Nickel-dependent hydrogenase WS1839 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains WS1840 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WS1841 PF00146 NADH dehydrogenase WS1842 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains WS1843 PF13187 4Fe-4S dicluster domain WS1844 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 WS1844 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain WS1845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1846 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain WS1846 PF02777 Iron/manganese superoxide dismutases, C-terminal domain WS1849 PF00384 Molybdopterin oxidoreductase WS1849 PF01568 Molydopterin dinucleotide binding domain WS1849 PF10518 TAT (twin-arginine translocation) pathway signal sequence WS1851 PF00990 GGDEF domain WS1851 PF14827 Sensory domain of two-component sensor kinase WS1852 PF02322 WS1852 WS1853 PF01654 WS1853 WS1854 PF14899 WS1854 WS1855 PF02579 Dinitrogenase iron-molybdenum cofactor WS1857 PF02001 WS1857 WS1857 PF02579 Dinitrogenase iron-molybdenum cofactor WS1860 PF00474 Sodium:solute symporter family WS1861 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1861 PF13188 PAS domain WS1861 PF13426 PAS domain WS1863 PF03480 Bacterial extracellular solute-binding protein, family 7 WS1864 PF04290 WS1864 WS1865 PF06808 WS1865 WS1866 PF09335 WS1866 WS1867 PF02698 DUF218 domain WS1868 PF01384 WS1868 WS1869 PF00072 Response regulator receiver domain WS1869 PF01584 CheW-like domain WS1870 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain WS1870 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain WS1871 PF01084 Ribosomal protein S18 WS1872 PF00436 Single-strand binding protein family WS1873 PF01250 Ribosomal protein S6 WS1875 PF00773 RNB domain WS1875 PF08206 Ribonuclease B OB domain WS1876 PF08668 HDOD domain WS1877 PF00311 Phosphoenolpyruvate carboxylase WS1878 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain WS1878 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain WS1879 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain WS1880 PF03776 Septum formation topological specificity factor MinE WS1881 PF04748 Divergent polysaccharide deacetylase WS1882 PF00400 WD domain, G-beta repeat WS1883 PF02481 DNA recombination-mediator protein A WS1884 PF03652 Uncharacterised protein family (UPF0081) WS1885 PF01808 AICARFT/IMPCHase bienzyme WS1885 PF02142 MGS-like domain WS1886 PF00202 Aminotransferase class-III WS1887 PF09527 WS1887 WS1890 PF00140 Sigma-70 factor, region 1 WS1890 PF04539 Sigma-70 region 3 WS1890 PF04542 Sigma-70 region 2 WS1890 PF04545 Sigma-70, region 4 WS1891 PF00795 Carbon-nitrogen hydrolase WS1892 PF02609 Exonuclease VII small subunit WS1893 PF00561 alpha/beta hydrolase fold WS1894 PF01053 Cys/Met metabolism PLP-dependent enzyme WS1895 PF00478 IMP dehydrogenase / GMP reductase domain WS1895 PF00571 CBS domain WS1896 PF01425 Amidase WS1897 PF01264 Chorismate synthase WS1899 PF00035 Double-stranded RNA binding motif WS1899 PF14622 Ribonuclease-III-like WS1900 PF00075 RNase H WS1901 PF13176 Tetratricopeptide repeat WS1901 PF13432 Tetratricopeptide repeat WS1902 PF01807 CHC2 zinc finger WS1902 PF08275 DNA primase catalytic core, N-terminal domain WS1902 PF13662 Toprim domain WS1902 PF16730 WS1902 WS1903 PF02568 Thiamine biosynthesis protein (ThiI) WS1905 PF01522 Polysaccharide deacetylase WS1906 PF01075 Glycosyltransferase family 9 (heptosyltransferase) WS1907 PF00535 Glycosyl transferase family 2 WS1908 PF03279 WS1908 WS1909 PF01075 Glycosyltransferase family 9 (heptosyltransferase) WS1910 PF02541 Ppx/GppA phosphatase family WS1911 PF13187 4Fe-4S dicluster domain WS1912 PF00218 Indole-3-glycerol phosphate synthase WS1914 PF03692 WS1914 WS1915 PF05175 Methyltransferase small domain WS1916 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1916 PF08269 Cache domain WS1917 PF02348 Cytidylyltransferase WS1919 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WS1919 PF03466 LysR substrate binding domain WS1920 PF00890 FAD binding domain WS1920 PF02910 Fumarate reductase flavoprotein C-term WS1921 PF13085 2Fe-2S iron-sulfur cluster binding domain WS1921 PF13183 4Fe-4S dicluster domain WS1922 PF02754 WS1922 WS1923 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1923 PF12729 WS1923 WS1924 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase WS1924 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain WS1926 PF00239 Resolvase, N terminal domain WS1927 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1927 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1930 PF02384 N-6 DNA Methylase WS1931 PF00665 Integrase core domain WS1934 PF03797 Autotransporter beta-domain WS1936 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term WS1937 PF04608 Phosphatidylglycerophosphatase A WS1938 PF01747 ATP-sulfurylase WS1938 PF14306 PUA-like domain WS1939 PF00072 Response regulator receiver domain WS1940 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase WS1940 PF02542 YgbB family WS1941 PF01964 ThiC family WS1942 PF10609 ParA/MinD ATPase like WS1943 PF00005 ABC transporter WS1943 PF09383 NIL domain WS1944 PF00528 Binding-protein-dependent transport system inner membrane component WS1945 PF03180 NLPA lipoprotein WS1947 PF03458 WS1947 WS1948 PF00132 Bacterial transferase hexapeptide (six repeats) WS1949 PF02503 Polyphosphate kinase middle domain WS1949 PF13089 Polyphosphate kinase N-terminal domain WS1949 PF13090 Polyphosphate kinase C-terminal domain WS1951 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1951 PF12729 WS1951 WS1952 PF07690 Major Facilitator Superfamily WS1953 PF00593 TonB dependent receptor WS1953 PF07715 TonB-dependent Receptor Plug Domain WS1954 PF00072 Response regulator receiver domain WS1954 PF00486 Transcriptional regulatory protein, C terminal WS1955 PF00672 HAMP domain WS1955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1955 PF07568 WS1955 WS1955 PF08269 Cache domain WS1956 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1957 PF00665 Integrase core domain WS1957 PF01527 Transposase WS1957 PF13276 WS1957 WS1958 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS1960 PF00271 Helicase conserved C-terminal domain WS1960 PF02151 UvrB/uvrC motif WS1960 PF04851 Type III restriction enzyme, res subunit WS1960 PF12344 Ultra-violet resistance protein B WS1964 PF00270 DEAD/DEAH box helicase WS1964 PF00271 Helicase conserved C-terminal domain WS1966 PF03602 Conserved hypothetical protein 95 WS1967 PF13432 Tetratricopeptide repeat WS1968 PF04773 FecR protein WS1969 PF02405 WS1969 WS1970 PF03748 WS1970 WS1971 PF01648 4'-phosphopantetheinyl transferase superfamily WS1972 PF00004 ATPase family associated with various cellular activities (AAA) WS1972 PF02190 ATP-dependent protease La (LON) domain WS1972 PF05362 Lon protease (S16) C-terminal proteolytic domain WS1973 PF13525 Outer membrane lipoprotein WS1974 PF02623 FliW protein WS1975 PF14748 Pyrroline-5-carboxylate reductase dimerisation WS1976 PF01715 IPP transferase WS1977 PF01553 Acyltransferase WS1977 PF13444 Acetyltransferase (GNAT) domain WS1979 PF00849 RNA pseudouridylate synthase WS1979 PF01479 S4 domain WS1980 PF00005 ABC transporter WS1980 PF00664 ABC transporter transmembrane region WS1981 PF00072 Response regulator receiver domain WS1981 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS1981 PF08448 PAS fold WS1981 PF13426 PAS domain WS1982 PF01253 Translation initiation factor SUI1 WS1983 PF02811 PHP domain WS1983 PF07733 Bacterial DNA polymerase III alpha subunit WS1983 PF14579 Helix-hairpin-helix motif WS1986 PF01882 WS1986 WS1987 PF07726 ATPase family associated with various cellular activities (AAA) WS1988 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal WS1988 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III WS1989 PF02504 Fatty acid synthesis protein WS1990 PF02620 WS1990 WS1991 PF00334 Nucleoside diphosphate kinase WS1994 PF00438 S-adenosylmethionine synthetase, N-terminal domain WS1994 PF02772 S-adenosylmethionine synthetase, central domain WS1994 PF02773 S-adenosylmethionine synthetase, C-terminal domain WS1995 PF00578 AhpC/TSA family WS1995 PF10417 C-terminal domain of 1-Cys peroxiredoxin WS1996 PF02779 Transketolase, pyrimidine binding domain WS1996 PF02780 Transketolase, C-terminal domain WS1996 PF13292 1-deoxy-D-xylulose-5-phosphate synthase WS1997 PF02108 WS1997 WS1998 PF01706 FliG C-terminal domain WS1998 PF14841 FliG middle domain WS1998 PF14842 FliG N-terminal domain WS1999 PF01514 Secretory protein of YscJ/FliF family WS1999 PF08345 WS1999 WS2000 PF00155 Aminotransferase class I and II WS2001 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WS2001 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WS2001 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WS2001 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WS2002 PF04909 Amidohydrolase WS2003 PF00581 Rhodanese-like domain WS2004 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus WS2004 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus WS2005 PF02637 GatB domain WS2005 PF02934 GatB/GatE catalytic domain WS2006 PF04055 Radical SAM superfamily WS2006 PF06463 Molybdenum Cofactor Synthesis C WS2006 PF13353 4Fe-4S single cluster domain WS2007 PF12804 MobA-like NTP transferase domain WS2008 PF13899 Thioredoxin-like WS2009 PF01312 FlhB HrpN YscU SpaS Family WS2010 PF01368 DHH family WS2010 PF02272 DHHA1 domain WS2011 PF01551 Peptidase family M23 WS2012 PF03775 Septum formation inhibitor MinC, C-terminal domain WS2013 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase WS2015 PF00288 GHMP kinases N terminal domain WS2015 PF08544 GHMP kinases C terminal WS2016 PF00009 Elongation factor Tu GTP binding domain WS2016 PF04760 Translation initiation factor IF-2, N-terminal region WS2016 PF11987 Translation-initiation factor 2 WS2017 PF02033 Ribosome-binding factor A WS2018 PF02576 Uncharacterised BCR, YhbC family COG0779 WS2018 PF17384 WS2018 WS2019 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region WS2019 PF01872 RibD C-terminal domain WS2020 PF03886 Protein of unknown function (DUF330) WS2021 PF02470 WS2021 WS2022 PF00005 ABC transporter WS2023 PF02405 WS2023 WS2025 PF08447 PAS fold WS2026 PF09837 Uncharacterized protein conserved in bacteria (DUF2064) WS2030 PF00589 Phage integrase family WS2030 PF02899 Phage integrase, N-terminal SAM-like domain WS2037 PF08245 Mur ligase middle domain WS2038 PF00953 Glycosyl transferase family 4 WS2038 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 WS2039 PF01676 Metalloenzyme superfamily WS2039 PF06415 BPG-independent PGAM N-terminus (iPGM_N) WS2040 PF01926 50S ribosome-binding GTPase WS2040 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal WS2042 PF00892 EamA-like transporter family WS2043 PF01475 Ferric uptake regulator family WS2044 PF10087 WS2044 WS2045 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS2046 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS2047 PF00072 Response regulator receiver domain WS2047 PF00486 Transcriptional regulatory protein, C terminal WS2048 PF00155 Aminotransferase class I and II WS2049 PF00905 Penicillin binding protein transpeptidase domain WS2049 PF00912 Transglycosylase WS2050 PF00117 Glutamine amidotransferase class-I WS2050 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain WS2051 PF04368 WS2051 WS2052 PF01966 HD domain WS2052 PF13286 Phosphohydrolase-associated domain WS2054 PF03448 MgtE intracellular N domain WS2055 PF02050 Flagellar FliJ protein WS2056 PF00709 Adenylosuccinate synthetase WS2057 PF13393 Histidyl-tRNA synthetase WS2058 PF01255 Putative undecaprenyl diphosphate synthase WS2060 PF02441 Flavoprotein WS2060 PF04127 DNA / pantothenate metabolism flavoprotein WS2061 PF02719 Polysaccharide biosynthesis protein WS2062 PF00905 Penicillin binding protein transpeptidase domain WS2062 PF03717 Penicillin-binding Protein dimerisation domain WS2064 PF00583 Acetyltransferase (GNAT) family WS2065 PF01926 50S ribosome-binding GTPase WS2067 PF03968 OstA-like protein WS2069 PF08282 haloacid dehalogenase-like hydrolase WS2070 PF00475 Imidazoleglycerol-phosphate dehydratase WS2071 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel WS2071 PF05036 Sporulation related domain WS2072 PF01464 Transglycosylase SLT domain WS2072 PF01476 LysM domain WS2073 PF01026 TatD related DNase WS2075 PF00677 Lumazine binding domain WS2076 PF01312 FlhB HrpN YscU SpaS Family WS2077 PF03739 WS2077 WS2078 PF01195 Peptidyl-tRNA hydrolase WS2079 PF01386 Ribosomal L25p family WS2079 PF14693 Ribosomal protein TL5, C-terminal domain WS2080 PF00923 Transaldolase WS2081 PF00702 haloacid dehalogenase-like hydrolase WS2082 PF01584 CheW-like domain WS2083 PF00072 Response regulator receiver domain WS2083 PF01584 CheW-like domain WS2083 PF01627 Hpt domain WS2083 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS2083 PF02895 Signal transducing histidine kinase, homodimeric domain WS2084 PF00072 Response regulator receiver domain WS2084 PF01584 CheW-like domain WS2085 PF00149 Calcineurin-like phosphoesterase WS2086 PF01118 Semialdehyde dehydrogenase, NAD binding domain WS2086 PF02774 Semialdehyde dehydrogenase, dimerisation domain WS2087 PF02597 ThiS family WS2088 PF00072 Response regulator receiver domain WS2089 PF12804 MobA-like NTP transferase domain WS2089 PF14602 Hexapeptide repeat of succinyl-transferase WS2090 PF01618 WS2090 WS2092 PF00691 OmpA family WS2092 PF13677 WS2092 WS2093 PF00813 WS2093 WS2094 PF05958 tRNA (Uracil-5-)-methyltransferase WS2095 PF00563 EAL domain WS2095 PF00990 GGDEF domain WS2095 PF04392 ABC transporter substrate binding protein WS2096 PF13177 DNA polymerase III, delta subunit WS2097 PF00591 Glycosyl transferase family, a/b domain WS2098 PF02367 Uncharacterised P-loop hydrolase UPF0079 WS2099 PF00005 ABC transporter WS2100 PF00309 WS2100 WS2100 PF04552 Sigma-54, DNA binding domain WS2100 PF04963 Sigma-54 factor, core binding domain WS2102 PF01258 Prokaryotic dksA/traR C4-type zinc finger WS2103 PF11756 WS2103 WS2104 PF09424 Yqey-like protein WS2105 PF02107 WS2105 WS2106 PF02348 Cytidylyltransferase WS2108 PF00583 Acetyltransferase (GNAT) family WS2109 PF03102 NeuB family WS2109 PF08666 SAF domain WS2110 PF00291 Pyridoxal-phosphate dependent enzyme WS2110 PF14821 Threonine synthase N terminus WS2111 PF01790 WS2111 WS2113 PF00072 Response regulator receiver domain WS2113 PF07228 Stage II sporulation protein E (SpoIIE) WS2113 PF13581 Histidine kinase-like ATPase domain WS2114 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS2115 PF00849 RNA pseudouridylate synthase WS2116 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) WS2117 PF01784 NIF3 (NGG1p interacting factor 3) WS2117 PF02591 Putative zinc ribbon domain WS2118 PF02091 Glycyl-tRNA synthetase alpha subunit WS2119 PF01937 Protein of unknown function DUF89 WS2120 PF13118 WS2120 WS2121 PF00731 AIR carboxylase WS2122 PF01136 WS2122 WS2124 PF00120 Glutamine synthetase, catalytic domain WS2124 PF03951 Glutamine synthetase, beta-Grasp domain WS2125 PF00106 short chain dehydrogenase WS2126 PF02664 S-Ribosylhomocysteinase (LuxS) WS2127 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS2128 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WS2130 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg WS2130 PF17147 WS2130 WS2131 PF14697 4Fe-4S dicluster domain WS2132 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase WS2133 PF13419 Haloacid dehalogenase-like hydrolase WS2134 PF01554 MatE WS2137 PF00380 Ribosomal protein S9/S16 WS2138 PF00572 Ribosomal protein L13 WS2140 PF00696 Amino acid kinase family WS2141 PF04055 Radical SAM superfamily WS2141 PF12345 WS2141 WS2141 PF13353 4Fe-4S single cluster domain WS2143 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain WS2143 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WS2146 PF01300 Telomere recombination WS2147 PF02142 MGS-like domain WS2147 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WS2147 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WS2148 PF01564 Spermine/spermidine synthase WS2148 PF17284 WS2148 WS2149 PF01121 Dephospho-CoA kinase WS2150 PF01678 Diaminopimelate epimerase WS2151 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase WS2152 PF00355 Rieske [2Fe-2S] domain WS2152 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal WS2153 PF00032 Cytochrome b(C-terminal)/b6/petD WS2153 PF00033 Cytochrome b(N-terminal)/b6/petB WS2154 PF00034 Cytochrome c WS2154 PF02167 Cytochrome C1 family WS2155 PF04452 RNA methyltransferase WS2157 PF00762 Ferrochelatase WS2158 PF13098 Thioredoxin-like domain WS2159 PF01578 WS2159 WS2159 PF05140 WS2159 WS2160 PF01479 S4 domain WS2163 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS2164 PF00764 Arginosuccinate synthase WS2165 PF00586 AIR synthase related protein, N-terminal domain WS2165 PF02769 AIR synthase related protein, C-terminal domain WS2166 PF13401 AAA domain WS2167 PF06347 Bacterial SH3 domain WS2168 PF01488 Shikimate / quinate 5-dehydrogenase WS2168 PF08501 Shikimate dehydrogenase substrate binding domain WS2170 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein WS2170 PF16321 WS2170 WS2171 PF00122 E1-E2 ATPase WS2171 PF00403 Heavy-metal-associated domain WS2171 PF00702 haloacid dehalogenase-like hydrolase WS2171 PF12156 WS2171 WS2172 PF00117 Glutamine amidotransferase class-I WS2173 PF01699 Sodium/calcium exchanger protein WS2174 PF00563 EAL domain WS2175 PF00156 Phosphoribosyl transferase domain WS2176 PF00860 Permease family WS2177 PF04055 Radical SAM superfamily WS2178 PF12804 MobA-like NTP transferase domain WS2179 PF07722 Peptidase C26 WS2180 PF00391 PEP-utilising enzyme, mobile domain WS2181 PF08241 Methyltransferase domain WS2182 PF01583 Adenylylsulphate kinase WS2183 PF13578 Methyltransferase domain WS2184 PF04007 WS2184 WS2185 PF00733 Asparagine synthase WS2185 PF13537 Glutamine amidotransferase domain WS2186 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family WS2187 PF00132 Bacterial transferase hexapeptide (six repeats) WS2188 PF01408 Oxidoreductase family, NAD-binding Rossmann fold WS2188 PF02894 Oxidoreductase family, C-terminal alpha/beta domain WS2189 PF02350 UDP-N-acetylglucosamine 2-epimerase WS2190 PF13439 Glycosyltransferase Family 4 WS2192 PF00733 Asparagine synthase WS2192 PF13537 Glutamine amidotransferase domain WS2193 PF04055 Radical SAM superfamily WS2195 PF08241 Methyltransferase domain WS2198 PF00669 Bacterial flagellin N-terminal helical region WS2198 PF00700 Bacterial flagellin C-terminal helical region WS2198 PF07196 Flagellin hook IN motif WS2199 PF01973 WS2199 WS2200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS2201 PF00072 Response regulator receiver domain WS2201 PF00486 Transcriptional regulatory protein, C terminal WS2202 PF05573 NosL WS2203 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WS2203 PF03466 LysR substrate binding domain WS2204 PF03601 WS2204 WS2205 PF01106 NifU-like domain WS2205 PF01592 NifU-like N terminal domain WS2205 PF04324 BFD-like [2Fe-2S] binding domain WS2206 PF00266 Aminotransferase class-V WS2207 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WS2209 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WS2209 PF05697 Bacterial trigger factor protein (TF) WS2209 PF05698 Bacterial trigger factor protein (TF) C-terminus WS2210 PF00574 Clp protease WS2211 PF00990 GGDEF domain WS2212 PF01327 Polypeptide deformylase WS2213 PF01078 Magnesium chelatase, subunit ChlI WS2213 PF13335 WS2213 WS2213 PF13541 Subunit ChlI of Mg-chelatase WS2214 PF00005 ABC transporter WS2214 PF12848 ABC transporter WS2216 PF04264 YceI-like domain WS2217 PF00749 tRNA synthetases class I (E and Q), catalytic domain WS2219 PF01180 Dihydroorotate dehydrogenase WS2220 PF00675 Insulinase (Peptidase family M16) WS2220 PF05193 Peptidase M16 inactive domain WS2221 PF00701 Dihydrodipicolinate synthetase family WS2222 PF13561 Enoyl-(Acyl carrier protein) reductase WS2223 PF01066 CDP-alcohol phosphatidyltransferase WS2224 PF02163 Peptidase family M50 WS2224 PF13180 PDZ domain WS2225 PF01168 Alanine racemase, N-terminal domain WS2226 PF13180 PDZ domain WS2226 PF13365 Trypsin-like peptidase domain WS2228 PF02511 Thymidylate synthase complementing protein WS2229 PF02075 Crossover junction endodeoxyribonuclease RuvC