WS0000 SM00382 ATPases associated with a variety of cellular activities WS0000 SM00760 Bacterial dnaA protein helix-turn-helix domain WS0001 SM00480 DNA polymerase III beta subunit WS0002 SM00387 Histidine kinase-like ATPases WS0002 SM00433 TopoisomeraseII WS0004 SM01207 WS0004 WS0005 SM00905 Dihydroneopterin aldolase WS0011 SM00448 cheY-homologous receiver domain WS0011 SM00862 Transcriptional regulatory protein, C terminal WS0012 SM00387 Histidine kinase-like ATPases WS0012 SM00388 His Kinase A (phosphoacceptor) domain WS0014 SM00116 Domain in cystathionine beta-synthase and other proteins. WS0016 SM00387 Histidine kinase-like ATPases WS0016 SM00388 His Kinase A (phosphoacceptor) domain WS0023 SM00267 diguanylate cyclase WS0029 SM00926 Molybdopterin oxidoreductase Fe4S4 domain WS0052 SM00382 ATPases associated with a variety of cellular activities WS0054 SM00984 UDP binding domain WS0055 SM00448 cheY-homologous receiver domain WS0055 SM00862 Transcriptional regulatory protein, C terminal WS0058 SM00382 ATPases associated with a variety of cellular activities WS0058 SM00994 ClpX C4-type zinc finger WS0058 SM01086 C-terminal, D2-small domain, of ClpB protein WS0062 SM00729 Elongator protein 3, MiaB family, Radical SAM WS0065 SM00650 Ribosomal RNA adenine dimethylases WS0066 SM00849 Metallo-beta-lactamase superfamily WS0067 SM00116 Domain in cystathionine beta-synthase and other proteins. WS0071 SM00322 K homology RNA-binding domain WS0071 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. WS0074 SM00382 ATPases associated with a variety of cellular activities WS0074 SM00962 SRP54-type protein, GTPase domain WS0075 SM00382 ATPases associated with a variety of cellular activities WS0077 SM00448 cheY-homologous receiver domain WS0077 SM00862 Transcriptional regulatory protein, C terminal WS0078 SM00387 Histidine kinase-like ATPases WS0078 SM00388 His Kinase A (phosphoacceptor) domain WS0091 SM00244 prohibitin homologues WS0094 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS0095 SM00260 Two component signalling adaptor domain WS0096 SM00382 ATPases associated with a variety of cellular activities WS0096 SM00843 WS0096 WS0108 SM00052 Putative diguanylate phosphodiesterase WS0108 SM00091 PAS domain WS0108 SM00267 diguanylate cyclase WS0108 SM00448 cheY-homologous receiver domain WS0110 SM00382 ATPases associated with a variety of cellular activities WS0111 SM00937 WS0111 WS0113 SM00729 Elongator protein 3, MiaB family, Radical SAM WS0114 SM00342 helix_turn_helix, arabinose operon control protein WS0116 SM00926 Molybdopterin oxidoreductase Fe4S4 domain WS0119 SM00448 cheY-homologous receiver domain WS0119 SM00862 Transcriptional regulatory protein, C terminal WS0120 SM00387 Histidine kinase-like ATPases WS0125 SM00052 Putative diguanylate phosphodiesterase WS0125 SM00267 diguanylate cyclase WS0126 SM00926 Molybdopterin oxidoreductase Fe4S4 domain WS0128 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS0131 SM00881 CoA binding domain WS0136 SM00278 Helix-hairpin-helix DNA-binding motif class 1 WS0137 SM01001 AIR carboxylase WS0143 SM00363 S4 RNA-binding domain WS0144 SM00060 Fibronectin type 3 domain WS0146 SM00382 ATPases associated with a variety of cellular activities WS0163 SM00849 Metallo-beta-lactamase superfamily WS0171 SM00919 Malic enzyme, NAD binding domain WS0171 SM01274 WS0171 WS0186 SM00836 DALR anticodon binding domain WS0186 SM01016 Arginyl tRNA synthetase N terminal dom WS0188 SM00072 Guanylate kinase homologues. WS0190 SM00155 Phospholipase D. Active site motifs. WS0192 SM00382 ATPases associated with a variety of cellular activities WS0201 SM00450 Rhodanese Homology Domain WS0212 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) WS0212 SM00091 PAS domain WS0212 SM00387 Histidine kinase-like ATPases WS0212 SM00388 His Kinase A (phosphoacceptor) domain WS0212 SM00448 cheY-homologous receiver domain WS0213 SM00448 cheY-homologous receiver domain WS0214 SM00448 cheY-homologous receiver domain WS0221 SM00479 WS0221 WS0231 SM00864 Tubulin/FtsZ family, GTPase domain WS0231 SM00865 Tubulin/FtsZ family, C-terminal domain WS0232 SM00842 Cell division protein FtsA WS0239 SM01409 WS0239 WS0240 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. WS0240 SM00954 Region found in RelA / SpoT proteins WS0241 SM00363 S4 RNA-binding domain WS0243 SM00646 WS0243 WS0248 SM00382 ATPases associated with a variety of cellular activities WS0256 SM00382 ATPases associated with a variety of cellular activities WS0257 SM00260 Two component signalling adaptor domain WS0257 SM00448 cheY-homologous receiver domain WS0277 SM00382 ATPases associated with a variety of cellular activities WS0278 SM00062 Bacterial periplasmic substrate-binding proteins WS0278 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. WS0279 SM00062 Bacterial periplasmic substrate-binding proteins WS0279 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. WS0283 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS0288 SM00342 helix_turn_helix, arabinose operon control protein WS0293 SM00947 Carbonic anhydrase WS0297 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family WS0298 SM00849 Metallo-beta-lactamase superfamily WS0299 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. WS0305 SM00387 Histidine kinase-like ATPases WS0305 SM00388 His Kinase A (phosphoacceptor) domain WS0306 SM00448 cheY-homologous receiver domain WS0306 SM00862 Transcriptional regulatory protein, C terminal WS0309 SM00883 Chaperonin 10 Kd subunit WS0322 SM00278 Helix-hairpin-helix DNA-binding motif class 1 WS0324 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain WS0332 SM00830 Chorismate mutase type II WS0337 SM00382 ATPases associated with a variety of cellular activities WS0337 SM01086 C-terminal, D2-small domain, of ClpB protein WS0344 SM00267 diguanylate cyclase WS0344 SM00448 cheY-homologous receiver domain WS0345 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WS0353 SM00487 DEAD-like helicases superfamily WS0353 SM00490 helicase superfamily c-terminal domain WS0365 SM00434 DNA Topoisomerase IV WS0367 SM00382 ATPases associated with a variety of cellular activities WS0367 SM00448 cheY-homologous receiver domain WS0368 SM00859 Semialdehyde dehydrogenase, NAD binding domain WS0374 SM00729 Elongator protein 3, MiaB family, Radical SAM WS0376 SM00448 cheY-homologous receiver domain WS0378 SM00387 Histidine kinase-like ATPases WS0385 SM00671 Sel1-like repeats. WS0390 SM00382 ATPases associated with a variety of cellular activities WS0395 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain WS0398 SM00267 diguanylate cyclase WS0398 SM01079 WS0398 WS0409 SM00938 Nitrogen regulatory protein P-II WS0414 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) WS0414 SM00091 PAS domain WS0414 SM00267 diguanylate cyclase WS0414 SM00448 cheY-homologous receiver domain WS0415 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) WS0415 SM00091 PAS domain WS0415 SM00387 Histidine kinase-like ATPases WS0415 SM00448 cheY-homologous receiver domain WS0416 SM00998 Adenylosuccinate lyase C-terminus WS0417 SM00363 S4 RNA-binding domain WS0426 SM00028 Tetratricopeptide repeats WS0426 SM00327 von Willebrand factor (vWF) type A domain WS0427 SM00327 von Willebrand factor (vWF) type A domain WS0430 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs WS0430 SM00474 3'-5' exonuclease WS0430 SM00475 5'-3' exonuclease WS0430 SM00482 DNA polymerase A domain WS0432 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS0440 SM00278 Helix-hairpin-helix DNA-binding motif class 1 WS0446 SM00967 RNA 2'-O ribose methyltransferase substrate binding WS0457 SM00729 Elongator protein 3, MiaB family, Radical SAM WS0462 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. WS0462 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. WS0463 SM00649 Ribosomal protein L11/L12 WS0467 SM00663 RNA polymerase I subunit A N-terminus WS0470 SM00838 Elongation factor G C-terminus WS0470 SM00889 Elongation factor G, domain IV WS0477 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region WS0478 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WS0479 SM00926 Molybdopterin oxidoreductase Fe4S4 domain WS0479 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WS0490 SM00028 Tetratricopeptide repeats WS0493 SM00320 WD40 repeats WS0497 SM01007 Class II Aldolase and Adducin N-terminal domain WS0499 SM00411 bacterial (prokaryotic) histone like domain WS0510 SM00470 ParB-like nuclease domain WS0516 SM00382 ATPases associated with a variety of cellular activities WS0527 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. WS0529 SM00855 Phosphoglycerate mutase family WS0530 SM00382 ATPases associated with a variety of cellular activities WS0543 SM00382 ATPases associated with a variety of cellular activities WS0547 SM00382 ATPases associated with a variety of cellular activities WS0547 SM00962 SRP54-type protein, GTPase domain WS0547 SM00963 SRP54-type protein, helical bundle domain WS0557 SM00986 Uracil DNA glycosylase superfamily WS0557 SM00987 UreE urease accessory protein, C-terminal domain WS0560 SM00938 Nitrogen regulatory protein P-II WS0561 SM00861 Transketolase, pyrimidine binding domain WS0570 SM00382 ATPases associated with a variety of cellular activities WS0583 SM00984 UDP binding domain WS0585 SM00363 S4 RNA-binding domain WS0586 SM00904 Riboflavin kinase WS0591 SM00965 Secretin and TonB N terminus short domain WS0596 SM00479 WS0596 WS0597 SM00100 Cyclic nucleotide-monophosphate binding domain WS0603 SM00563 Phosphate acyltransferases WS0605 SM01211 WS0605 WS0608 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. WS0608 SM00245 tail specific protease WS0609 SM00382 ATPases associated with a variety of cellular activities WS0609 SM01086 C-terminal, D2-small domain, of ClpB protein WS0619 SM00448 cheY-homologous receiver domain WS0621 SM00382 ATPases associated with a variety of cellular activities WS0624 SM00917 LeuA allosteric (dimerisation) domain WS0626 SM00450 Rhodanese Homology Domain WS0629 SM00825 Beta-ketoacyl synthase WS0631 SM00822 WS0631 WS0638 SM00382 ATPases associated with a variety of cellular activities WS0640 SM00387 Histidine kinase-like ATPases WS0640 SM00388 His Kinase A (phosphoacceptor) domain WS0641 SM00448 cheY-homologous receiver domain WS0641 SM00862 Transcriptional regulatory protein, C terminal WS0644 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS0649 SM00382 ATPases associated with a variety of cellular activities WS0657 SM00448 cheY-homologous receiver domain WS0657 SM00862 Transcriptional regulatory protein, C terminal WS0658 SM00091 PAS domain WS0658 SM00387 Histidine kinase-like ATPases WS0660 SM00870 WS0660 WS0692 SM00636 WS0692 WS0693 SM00448 cheY-homologous receiver domain WS0697 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS0698 SM00271 DnaJ molecular chaperone homology domain WS0701 SM01005 Alanine racemase, C-terminal domain WS0709 SM00926 Molybdopterin oxidoreductase Fe4S4 domain WS0745 SM00478 endonuclease III WS0751 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor WS0753 SM00226 Low molecular weight phosphatase family WS0760 SM00226 Low molecular weight phosphatase family WS0761 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS0761 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain WS0764 SM00926 Molybdopterin oxidoreductase Fe4S4 domain WS0766 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor WS0772 SM00052 Putative diguanylate phosphodiesterase WS0775 SM00052 Putative diguanylate phosphodiesterase WS0775 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) WS0775 SM00267 diguanylate cyclase WS0785 SM00342 helix_turn_helix, arabinose operon control protein WS0785 SM00871 Bacterial transcription activator, effector binding domain WS0806 SM00052 Putative diguanylate phosphodiesterase WS0806 SM00267 diguanylate cyclase WS0808 SM00450 Rhodanese Homology Domain WS0810 SM00357 Cold shock protein domain WS0810 SM00382 ATPases associated with a variety of cellular activities WS0810 SM00959 Rho termination factor, N-terminal domain WS0815 SM01228 WS0815 WS0816 SM00937 WS0816 WS0820 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain WS0835 SM00852 Probable molybdopterin binding domain WS0841 SM00267 diguanylate cyclase WS0843 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS0845 SM00244 prohibitin homologues WS0847 SM00347 helix_turn_helix multiple antibiotic resistance protein WS0848 SM00052 Putative diguanylate phosphodiesterase WS0849 SM00387 Histidine kinase-like ATPases WS0849 SM00388 His Kinase A (phosphoacceptor) domain WS0849 SM00448 cheY-homologous receiver domain WS0850 SM00062 Bacterial periplasmic substrate-binding proteins WS0850 SM00387 Histidine kinase-like ATPases WS0850 SM00388 His Kinase A (phosphoacceptor) domain WS0850 SM00448 cheY-homologous receiver domain WS0852 SM00387 Histidine kinase-like ATPases WS0852 SM00448 cheY-homologous receiver domain WS0853 SM00448 cheY-homologous receiver domain WS0853 SM00862 Transcriptional regulatory protein, C terminal WS0859 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS0861 SM00382 ATPases associated with a variety of cellular activities WS0862 SM00028 Tetratricopeptide repeats WS0864 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS0864 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain WS0873 SM00028 Tetratricopeptide repeats WS0894 SM01209 WS0894 WS0894 SM01210 WS0894 WS0899 SM00316 Ribosomal protein S1-like RNA-binding domain WS0899 SM00322 K homology RNA-binding domain WS0900 SM00448 cheY-homologous receiver domain WS0900 SM00862 Transcriptional regulatory protein, C terminal WS0901 SM00387 Histidine kinase-like ATPases WS0901 SM00388 His Kinase A (phosphoacceptor) domain WS0901 SM00897 FIST N domain WS0901 SM01204 WS0901 WS0907 SM00382 ATPases associated with a variety of cellular activities WS0912 SM00320 WD40 repeats WS0913 SM00100 Cyclic nucleotide-monophosphate binding domain WS0919 SM00710 Parallel beta-helix repeats WS0919 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses WS0924 SM00382 ATPases associated with a variety of cellular activities WS0929 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS0934 SM00448 cheY-homologous receiver domain WS0934 SM00862 Transcriptional regulatory protein, C terminal WS0935 SM00387 Histidine kinase-like ATPases WS0938 SM00926 Molybdopterin oxidoreductase Fe4S4 domain WS0939 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS0940 SM00052 Putative diguanylate phosphodiesterase WS0940 SM00091 PAS domain WS0940 SM00267 diguanylate cyclase WS0941 SM00530 Helix-turn-helix XRE-family like proteins WS0943 SM00052 Putative diguanylate phosphodiesterase WS0943 SM00267 diguanylate cyclase WS0945 SM00382 ATPases associated with a variety of cellular activities WS0949 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS0950 SM00448 cheY-homologous receiver domain WS0950 SM00862 Transcriptional regulatory protein, C terminal WS0951 SM00387 Histidine kinase-like ATPases WS0951 SM00388 His Kinase A (phosphoacceptor) domain WS0955 SM00899 WS0955 WS0964 SM00116 Domain in cystathionine beta-synthase and other proteins. WS0964 SM00267 diguanylate cyclase WS0965 SM00052 Putative diguanylate phosphodiesterase WS0965 SM00267 diguanylate cyclase WS0971 SM00268 Actin WS0974 SM00387 Histidine kinase-like ATPases WS0974 SM00388 His Kinase A (phosphoacceptor) domain WS0974 SM00448 cheY-homologous receiver domain WS0975 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. WS0975 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) WS0975 SM00387 Histidine kinase-like ATPases WS0975 SM00388 His Kinase A (phosphoacceptor) domain WS0975 SM00448 cheY-homologous receiver domain WS0977 SM00382 ATPases associated with a variety of cellular activities WS0978 SM00382 ATPases associated with a variety of cellular activities WS0987 SM00382 ATPases associated with a variety of cellular activities WS0988 SM00382 ATPases associated with a variety of cellular activities WS0990 SM00342 helix_turn_helix, arabinose operon control protein WS1002 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS1005 SM00232 JAB/MPN domain WS1019 SM00411 bacterial (prokaryotic) histone like domain WS1021 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) WS1021 SM00091 PAS domain WS1021 SM00267 diguanylate cyclase WS1021 SM00448 cheY-homologous receiver domain WS1024 SM00052 Putative diguanylate phosphodiesterase WS1026 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WS1029 SM00881 CoA binding domain WS1033 SM00448 cheY-homologous receiver domain WS1034 SM00387 Histidine kinase-like ATPases WS1047 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS1054 SM01387 WS1054 WS1060 SM00478 endonuclease III WS1060 SM00525 WS1060 WS1066 SM00881 CoA binding domain WS1074 SM00878 Biotin carboxylase C-terminal domain WS1077 SM00448 cheY-homologous receiver domain WS1078 SM00260 Two component signalling adaptor domain WS1080 SM00073 Histidine Phosphotransfer domain WS1092 SM00382 ATPases associated with a variety of cellular activities WS1109 SM00342 helix_turn_helix, arabinose operon control protein WS1112 SM00382 ATPases associated with a variety of cellular activities WS1115 SM00796 Allophanate hydrolase subunit 1 WS1115 SM00797 Allophanate hydrolase subunit 2 WS1115 SM00878 Biotin carboxylase C-terminal domain WS1120 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor WS1124 SM00382 ATPases associated with a variety of cellular activities WS1129 SM00487 DEAD-like helicases superfamily WS1146 SM00926 Molybdopterin oxidoreductase Fe4S4 domain WS1155 SM00342 helix_turn_helix, arabinose operon control protein WS1157 SM00382 ATPases associated with a variety of cellular activities WS1167 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor WS1171 SM00320 WD40 repeats WS1178 SM00926 Molybdopterin oxidoreductase Fe4S4 domain WS1181 SM00100 Cyclic nucleotide-monophosphate binding domain WS1181 SM00419 helix_turn_helix, cAMP Regulatory protein WS1193 SM00100 Cyclic nucleotide-monophosphate binding domain WS1193 SM00419 helix_turn_helix, cAMP Regulatory protein WS1195 SM00852 Probable molybdopterin binding domain WS1199 SM00852 Probable molybdopterin binding domain WS1205 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) WS1205 SM00091 PAS domain WS1205 SM00267 diguanylate cyclase WS1207 SM00387 Histidine kinase-like ATPases WS1207 SM00388 His Kinase A (phosphoacceptor) domain WS1208 SM00448 cheY-homologous receiver domain WS1208 SM00862 Transcriptional regulatory protein, C terminal WS1209 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS1210 SM00271 DnaJ molecular chaperone homology domain WS1212 SM00138 Methyltransferase, chemotaxis proteins WS1217 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS1217 SM01049 WS1217 WS1229 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS1234 SM01018 B12 binding domain WS1236 SM00986 Uracil DNA glycosylase superfamily WS1236 SM00987 UreE urease accessory protein, C-terminal domain WS1239 SM00487 DEAD-like helicases superfamily WS1239 SM00490 helicase superfamily c-terminal domain WS1239 SM00982 WS1239 WS1239 SM01058 CarD-like/TRCF domain WS1243 SM00267 diguanylate cyclase WS1249 SM01323 WS1249 WS1253 SM00271 DnaJ molecular chaperone homology domain WS1254 SM00422 helix_turn_helix, mercury resistance WS1256 SM00382 ATPases associated with a variety of cellular activities WS1258 SM00957 SecA DEAD-like domain WS1258 SM00958 SecA preprotein cross-linking domain WS1264 SM00382 ATPases associated with a variety of cellular activities WS1265 SM00382 ATPases associated with a variety of cellular activities WS1279 SM00841 Elongation factor P, C-terminal WS1279 SM01185 WS1279 WS1285 SM01245 WS1285 WS1287 SM01234 WS1287 WS1289 SM00878 Biotin carboxylase C-terminal domain WS1293 SM00382 ATPases associated with a variety of cellular activities WS1293 SM01086 C-terminal, D2-small domain, of ClpB protein WS1304 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) WS1304 SM00091 PAS domain WS1304 SM00448 cheY-homologous receiver domain WS1305 SM00320 WD40 repeats WS1308 SM00874 tRNA synthetase B5 domain WS1308 SM00896 Ferredoxin-fold anticodon binding domain WS1311 SM00316 Ribosomal protein S1-like RNA-binding domain WS1316 SM00382 ATPases associated with a variety of cellular activities WS1323 SM00226 Low molecular weight phosphatase family WS1327 SM00450 Rhodanese Homology Domain WS1328 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) WS1328 SM00091 PAS domain WS1328 SM00387 Histidine kinase-like ATPases WS1333 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS1337 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS1339 SM00388 His Kinase A (phosphoacceptor) domain WS1339 SM00448 cheY-homologous receiver domain WS1340 SM00387 Histidine kinase-like ATPases WS1372 SM00382 ATPases associated with a variety of cellular activities WS1375 SM00387 Histidine kinase-like ATPases WS1375 SM00388 His Kinase A (phosphoacceptor) domain WS1375 SM00448 cheY-homologous receiver domain WS1376 SM00448 cheY-homologous receiver domain WS1403 SM00382 ATPases associated with a variety of cellular activities WS1403 SM00994 ClpX C4-type zinc finger WS1403 SM01086 C-terminal, D2-small domain, of ClpB protein WS1404 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. WS1404 SM00382 ATPases associated with a variety of cellular activities WS1406 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS1406 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain WS1413 SM00899 WS1413 WS1418 SM00382 ATPases associated with a variety of cellular activities WS1421 SM00965 Secretin and TonB N terminus short domain WS1430 SM00926 Molybdopterin oxidoreductase Fe4S4 domain WS1434 SM00448 cheY-homologous receiver domain WS1434 SM00862 Transcriptional regulatory protein, C terminal WS1436 SM00387 Histidine kinase-like ATPases WS1454 SM01329 WS1454 WS1463 SM00448 cheY-homologous receiver domain WS1463 SM00862 Transcriptional regulatory protein, C terminal WS1464 SM00387 Histidine kinase-like ATPases WS1464 SM00388 His Kinase A (phosphoacceptor) domain WS1466 SM00382 ATPases associated with a variety of cellular activities WS1467 SM00382 ATPases associated with a variety of cellular activities WS1482 SM00487 DEAD-like helicases superfamily WS1482 SM00490 helicase superfamily c-terminal domain WS1486 SM00463 Small MutS-related domain WS1486 SM00533 DNA-binding domain of DNA mismatch repair MUTS family WS1486 SM00534 ATPase domain of DNA mismatch repair MUTS family WS1493 SM00382 ATPases associated with a variety of cellular activities WS1494 SM01192 WS1494 WS1494 SM01193 WS1494 WS1498 SM00271 DnaJ molecular chaperone homology domain WS1500 SM00729 Elongator protein 3, MiaB family, Radical SAM WS1500 SM00876 Biotin and Thiamin Synthesis associated domain WS1501 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain WS1501 SM00437 Bacterial DNA topoisomerase I DNA-binding domain WS1501 SM00493 WS1501 WS1505 SM00028 Tetratricopeptide repeats WS1507 SM00478 endonuclease III WS1510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS1510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain WS1514 SM00382 ATPases associated with a variety of cellular activities WS1515 SM00729 Elongator protein 3, MiaB family, Radical SAM WS1520 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS1522 SM00387 Histidine kinase-like ATPases WS1523 SM00448 cheY-homologous receiver domain WS1523 SM00862 Transcriptional regulatory protein, C terminal WS1525 SM00054 EF-hand, calcium binding motif WS1533 SM00345 helix_turn_helix gluconate operon transcriptional repressor WS1533 SM00895 WS1533 WS1550 SM00382 ATPases associated with a variety of cellular activities WS1556 SM00052 Putative diguanylate phosphodiesterase WS1556 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) WS1556 SM00091 PAS domain WS1556 SM00267 diguanylate cyclase WS1559 SM00382 ATPases associated with a variety of cellular activities WS1568 SM00267 diguanylate cyclase WS1568 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain WS1590 SM00387 Histidine kinase-like ATPases WS1590 SM00388 His Kinase A (phosphoacceptor) domain WS1607 SM00465 GIY-YIG type nucleases (URI domain) WS1608 SM00342 helix_turn_helix, arabinose operon control protein WS1612 SM00342 helix_turn_helix, arabinose operon control protein WS1625 SM00271 DnaJ molecular chaperone homology domain WS1629 SM00450 Rhodanese Homology Domain WS1630 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. WS1630 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. WS1630 SM00849 Metallo-beta-lactamase superfamily WS1632 SM00028 Tetratricopeptide repeats WS1633 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain WS1633 SM01080 WS1633 WS1635 SM01400 WS1635 WS1642 SM00382 ATPases associated with a variety of cellular activities WS1642 SM00962 SRP54-type protein, GTPase domain WS1655 SM00838 Elongation factor G C-terminus WS1660 SM00382 ATPases associated with a variety of cellular activities WS1672 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS1673 SM00091 PAS domain WS1692 SM00662 RNA polymerases D WS1693 SM00363 S4 RNA-binding domain WS1693 SM01390 WS1693 WS1696 SM00316 Ribosomal protein S1-like RNA-binding domain WS1705 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. WS1706 SM01374 WS1706 WS1710 SM00322 K homology RNA-binding domain WS1713 SM01382 WS1713 WS1713 SM01383 WS1713 WS1722 SM00729 Elongator protein 3, MiaB family, Radical SAM WS1726 SM00448 cheY-homologous receiver domain WS1726 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. WS1727 SM00062 Bacterial periplasmic substrate-binding proteins WS1727 SM00387 Histidine kinase-like ATPases WS1727 SM00388 His Kinase A (phosphoacceptor) domain WS1727 SM00448 cheY-homologous receiver domain WS1751 SM00729 Elongator protein 3, MiaB family, Radical SAM WS1754 SM00518 AP endonuclease family 2 WS1759 SM00495 Chitin-binding domain type 3 WS1763 SM00838 Elongation factor G C-terminus WS1765 SM00670 Large family of predicted nucleotide-binding domains WS1769 SM00729 Elongator protein 3, MiaB family, Radical SAM WS1776 SM00729 Elongator protein 3, MiaB family, Radical SAM WS1778 SM00316 Ribosomal protein S1-like RNA-binding domain WS1783 SM00852 Probable molybdopterin binding domain WS1787 SM00260 Two component signalling adaptor domain WS1787 SM00448 cheY-homologous receiver domain WS1790 SM00278 Helix-hairpin-helix DNA-binding motif class 1 WS1790 SM00292 breast cancer carboxy-terminal domain WS1790 SM00532 Ligase N family WS1796 SM00388 His Kinase A (phosphoacceptor) domain WS1798 SM00448 cheY-homologous receiver domain WS1798 SM00862 Transcriptional regulatory protein, C terminal WS1803 SM00382 ATPases associated with a variety of cellular activities WS1813 SM01329 WS1813 WS1817 SM00448 cheY-homologous receiver domain WS1817 SM00862 Transcriptional regulatory protein, C terminal WS1818 SM00387 Histidine kinase-like ATPases WS1821 SM01004 Delta-aminolevulinic acid dehydratase WS1822 SM00749 bacterial OsmY and nodulation domain WS1825 SM00382 ATPases associated with a variety of cellular activities WS1844 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain WS1845 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS1851 SM00267 diguanylate cyclase WS1861 SM00091 PAS domain WS1861 SM00387 Histidine kinase-like ATPases WS1861 SM00388 His Kinase A (phosphoacceptor) domain WS1869 SM00260 Two component signalling adaptor domain WS1869 SM00448 cheY-homologous receiver domain WS1875 SM00357 Cold shock protein domain WS1875 SM00955 WS1875 WS1882 SM00320 WD40 repeats WS1884 SM00732 Likely ribonuclease with RNase H fold. WS1885 SM00798 AICARFT/IMPCHase bienzyme WS1885 SM00851 MGS-like domain WS1895 SM00116 Domain in cystathionine beta-synthase and other proteins. WS1895 SM01240 WS1895 WS1899 SM00358 Double-stranded RNA binding motif WS1899 SM00535 Ribonuclease III family WS1901 SM00028 Tetratricopeptide repeats WS1902 SM00400 zinc finger WS1902 SM00493 WS1902 WS1916 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS1916 SM01049 WS1916 WS1923 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS1924 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase WS1926 SM00857 Resolvase, N terminal domain WS1927 SM00387 Histidine kinase-like ATPases WS1934 SM00869 Autotransporter beta-domain WS1939 SM00448 cheY-homologous receiver domain WS1943 SM00382 ATPases associated with a variety of cellular activities WS1943 SM00930 WS1943 WS1951 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS1954 SM00448 cheY-homologous receiver domain WS1954 SM00862 Transcriptional regulatory protein, C terminal WS1955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain WS1958 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS1960 SM00487 DEAD-like helicases superfamily WS1960 SM00490 helicase superfamily c-terminal domain WS1964 SM00487 DEAD-like helicases superfamily WS1964 SM00490 helicase superfamily c-terminal domain WS1972 SM00382 ATPases associated with a variety of cellular activities WS1972 SM00464 Found in ATP-dependent protease La (LON) WS1977 SM00563 Phosphate acyltransferases WS1979 SM00363 S4 RNA-binding domain WS1980 SM00382 ATPases associated with a variety of cellular activities WS1981 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) WS1981 SM00091 PAS domain WS1981 SM00387 Histidine kinase-like ATPases WS1981 SM00388 His Kinase A (phosphoacceptor) domain WS1981 SM00448 cheY-homologous receiver domain WS1983 SM00481 DNA polymerase alpha chain like domain WS1991 SM00562 WS1991 WS1996 SM00861 Transketolase, pyrimidine binding domain WS2003 SM00450 Rhodanese Homology Domain WS2005 SM00845 GatB domain WS2006 SM00729 Elongator protein 3, MiaB family, Radical SAM WS2022 SM00382 ATPases associated with a variety of cellular activities WS2046 SM00387 Histidine kinase-like ATPases WS2047 SM00448 cheY-homologous receiver domain WS2047 SM00862 Transcriptional regulatory protein, C terminal WS2050 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain WS2052 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. WS2056 SM00788 Adenylosuccinate synthetase WS2072 SM00257 Lysin motif WS2082 SM00260 Two component signalling adaptor domain WS2083 SM00073 Histidine Phosphotransfer domain WS2083 SM00260 Two component signalling adaptor domain WS2083 SM00387 Histidine kinase-like ATPases WS2083 SM00448 cheY-homologous receiver domain WS2083 SM01231 WS2083 WS2084 SM00260 Two component signalling adaptor domain WS2084 SM00448 cheY-homologous receiver domain WS2086 SM00859 Semialdehyde dehydrogenase, NAD binding domain WS2088 SM00448 cheY-homologous receiver domain WS2095 SM00052 Putative diguanylate phosphodiesterase WS2095 SM00267 diguanylate cyclase WS2096 SM00382 ATPases associated with a variety of cellular activities WS2099 SM00382 ATPases associated with a variety of cellular activities WS2109 SM00858 WS2109 WS2113 SM00331 Sigma factor PP2C-like phosphatases WS2113 SM00448 cheY-homologous receiver domain WS2114 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS2114 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain WS2121 SM01001 AIR carboxylase WS2124 SM01230 WS2124 WS2127 SM00387 Histidine kinase-like ATPases WS2127 SM00388 His Kinase A (phosphoacceptor) domain WS2147 SM00851 MGS-like domain WS2147 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WS2151 SM00047 Lysozyme subfamily 2 WS2160 SM00363 S4 RNA-binding domain WS2163 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). WS2171 SM00746 metallochaperone-like domain WS2174 SM00052 Putative diguanylate phosphodiesterase WS2193 SM00729 Elongator protein 3, MiaB family, Radical SAM WS2200 SM00387 Histidine kinase-like ATPases WS2201 SM00448 cheY-homologous receiver domain WS2201 SM00862 Transcriptional regulatory protein, C terminal WS2207 SM00382 ATPases associated with a variety of cellular activities WS2211 SM00267 diguanylate cyclase WS2214 SM00382 ATPases associated with a variety of cellular activities WS2216 SM00867 YceI-like domain WS2221 SM01130 WS2221 WS2224 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. WS2226 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2.