locus-tag	class	description
XaFJ1_GM000029	COG3451	type IV secretory pathway VirB4
XaFJ1_GM000040	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
XaFJ1_GM000041	COG0187	DNA topoisomerase II activity
XaFJ1_GM000042	COG1266	CAAX protease self-immunity
XaFJ1_GM000043	COG0501	Belongs to the peptidase M48B family
XaFJ1_GM000052	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
XaFJ1_GM000056	COG1304	FMN binding
XaFJ1_GM000062	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
XaFJ1_GM000063	COG1074	ATP-dependent DNA helicase activity
XaFJ1_GM000064	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
XaFJ1_GM000065	COG1127	ABC transporter
XaFJ1_GM000066	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
XaFJ1_GM000067	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
XaFJ1_GM000071	COG2853	Lipoprotein
XaFJ1_GM000072	COG0386	Belongs to the glutathione peroxidase family
XaFJ1_GM000073	COG1322	Protein conserved in bacteria
XaFJ1_GM000075	COG3693	PFAM glycoside hydrolase, family 10
XaFJ1_GM000078	COG2211	Major facilitator Superfamily
XaFJ1_GM000081	COG2937	Belongs to the GPAT DAPAT family
XaFJ1_GM000086	COG0284	orotidine-5'-phosphate decarboxylase activity
XaFJ1_GM000087	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
XaFJ1_GM000094	COG3186	Phenylalanine-4-hydroxylase
XaFJ1_GM000095	COG1522	sequence-specific DNA binding
XaFJ1_GM000097	COG0246	Mannitol dehydrogenase
XaFJ1_GM000098	COG1472	Belongs to the glycosyl hydrolase 3 family
XaFJ1_GM000100	COG4948	Mandelate Racemase Muconate Lactonizing
XaFJ1_GM000102	COG3661	Belongs to the glycosyl hydrolase 67 family
XaFJ1_GM000105	COG0037	tRNA processing
XaFJ1_GM000109	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
XaFJ1_GM000113	COG0805	protein transport
XaFJ1_GM000115	COG0519	Catalyzes the synthesis of GMP from XMP
XaFJ1_GM000115	COG0518	GMP synthase (glutamine-hydrolyzing) activity
XaFJ1_GM000117	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
XaFJ1_GM000121	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
XaFJ1_GM000122	COG3265	gluconokinase activity
XaFJ1_GM000123	COG2211	Major facilitator Superfamily
XaFJ1_GM000124	COG3459	Glycosyltransferase 36 associated
XaFJ1_GM000125	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
XaFJ1_GM000126	COG2205	protein histidine kinase activity
XaFJ1_GM000127	COG0457	Tetratricopeptide repeat
XaFJ1_GM000131	COG1971	Probably functions as a manganese efflux pump
XaFJ1_GM000141	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
XaFJ1_GM000145	COG2091	lysine biosynthetic process via aminoadipic acid
XaFJ1_GM000146	COG3540	Alkaline phosphatase
XaFJ1_GM000148	COG0357	Ribosomal RNA small subunit methyltransferase G
XaFJ1_GM000149	COG1192	Involved in chromosome partitioning
XaFJ1_GM000152	COG0463	Glycosyl transferase, family 2
XaFJ1_GM000154	COG0227	Belongs to the bacterial ribosomal protein bL28 family
XaFJ1_GM000155	COG0267	Belongs to the bacterial ribosomal protein bL33 family
XaFJ1_GM000158	COG0210	DNA helicase
XaFJ1_GM000160	COG0589	response to stress
XaFJ1_GM000165	COG0408	coproporphyrinogen oxidase activity
XaFJ1_GM000168	COG1271	oxidase subunit
XaFJ1_GM000169	COG1294	oxidase, subunit
XaFJ1_GM000170	COG0318	PFAM AMP-dependent synthetase and ligase
XaFJ1_GM000173	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
XaFJ1_GM000177	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
XaFJ1_GM000182	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_GM000185	COG0463	Glycosyl transferase, family 2
XaFJ1_GM000187	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
XaFJ1_GM000189	COG3100	YcgL domain-containing protein
XaFJ1_GM000191	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
XaFJ1_GM000193	COG0045	succinate-CoA ligase (ADP-forming) activity
XaFJ1_GM000193	COG1042	CoA-binding domain protein
XaFJ1_GM000193	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
XaFJ1_GM000197	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
XaFJ1_GM000198	COG1960	acyl-CoA dehydrogenase activity
XaFJ1_GM000199	COG3245	cytochrome
XaFJ1_GM000203	COG0523	cobalamin synthesis protein
XaFJ1_GM000205	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
XaFJ1_GM000206	COG1846	Transcriptional regulator
XaFJ1_GM000207	COG1764	response to oxidative stress
XaFJ1_GM000208	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
XaFJ1_GM000209	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
XaFJ1_GM000214	COG1902	pentaerythritol trinitrate reductase activity
XaFJ1_GM000215	COG2084	Dehydrogenase
XaFJ1_GM000217	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
XaFJ1_GM000220	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
XaFJ1_GM000222	COG0745	RESPONSE REGULATOR receiver
XaFJ1_GM000223	COG2205	protein histidine kinase activity
XaFJ1_GM000228	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
XaFJ1_GM000228	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
XaFJ1_GM000235	COG0180	Tryptophanyl-tRNA synthetase
XaFJ1_GM000241	COG3279	Response regulator of the LytR AlgR family
XaFJ1_GM000244	COG0753	catalase activity
XaFJ1_GM000245	COG1320	monovalent cation:proton antiporter activity
XaFJ1_GM000246	COG2212	antiporter activity
XaFJ1_GM000248	COG0651	ATP synthesis coupled electron transport
XaFJ1_GM000249	COG1006	Multisubunit Na H antiporter MnhC subunit
XaFJ1_GM000250	COG2111	Na H antiporter
XaFJ1_GM000250	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
XaFJ1_GM000262	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
XaFJ1_GM000263	COG0134	indole-3-glycerol-phosphate synthase activity
XaFJ1_GM000268	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
XaFJ1_GM000270	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
XaFJ1_GM000273	COG1051	belongs to the nudix hydrolase family
XaFJ1_GM000282	COG2816	NAD+ diphosphatase activity
XaFJ1_GM000285	COG1289	transmembrane transporter activity
XaFJ1_GM000286	COG0151	Belongs to the GarS family
XaFJ1_GM000287	COG0138	bifunctional purine biosynthesis protein purh
XaFJ1_GM000289	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
XaFJ1_GM000291	COG2264	protein methyltransferase activity
XaFJ1_GM000292	COG0439	Biotin carboxylase
XaFJ1_GM000293	COG0511	ligase activity, forming carbon-carbon bonds
XaFJ1_GM000294	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
XaFJ1_GM000295	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
XaFJ1_GM000298	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
XaFJ1_GM000299	COG0459	protein refolding
XaFJ1_GM000302	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
XaFJ1_GM000305	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
XaFJ1_GM000306	COG0584	glycerophosphoryl diester phosphodiesterase
XaFJ1_GM000311	COG2353	YceI-like domain
XaFJ1_GM000320	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
XaFJ1_GM000322	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
XaFJ1_GM000323	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
XaFJ1_GM000334	COG0156	8-amino-7-oxononanoate synthase activity
XaFJ1_GM000335	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
XaFJ1_GM000336	COG1040	competence protein
XaFJ1_GM000338	COG2267	carboxylic ester hydrolase activity
XaFJ1_GM000339	COG0606	chelatase, subunit chli
XaFJ1_GM000340	COG2960	long-chain fatty acid transporting porin activity
XaFJ1_GM000343	COG1166	arginine decarboxylase activity
XaFJ1_GM000344	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
XaFJ1_GM000345	COG1819	glycosyl
XaFJ1_GM000346	COG2755	lipolytic protein G-D-S-L family
XaFJ1_GM000346	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
XaFJ1_GM000349	COG4221	oxidoreductase activity
XaFJ1_GM000353	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
XaFJ1_GM000357	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
XaFJ1_GM000362	COG0739	heme binding
XaFJ1_GM000363	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
XaFJ1_GM000364	COG1064	alcohol dehydrogenase
XaFJ1_GM000367	COG4942	peptidase
XaFJ1_GM000368	COG0793	Belongs to the peptidase S41A family
XaFJ1_GM000375	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
XaFJ1_GM000378	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
XaFJ1_GM000383	COG1612	heme a metabolic process
XaFJ1_GM000384	COG0109	protoheme IX farnesyltransferase activity
XaFJ1_GM000388	COG0358	DNA primase activity
XaFJ1_GM000389	COG1295	ribonuclease BN
XaFJ1_GM000394	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
XaFJ1_GM000396	COG0531	amino acid
XaFJ1_GM000397	COG4948	Mandelate Racemase Muconate Lactonizing
XaFJ1_GM000399	COG3023	N-Acetylmuramoyl-L-alanine amidase
XaFJ1_GM000404	COG5383	Protein conserved in bacteria
XaFJ1_GM000405	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
XaFJ1_GM000411	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
XaFJ1_GM000416	COG4807	Protein conserved in bacteria
XaFJ1_GM000422	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_GM000423	COG0179	Fumarylacetoacetate (FAA) hydrolase
XaFJ1_GM000424	COG4948	Mandelate Racemase Muconate Lactonizing
XaFJ1_GM000425	COG3254	rhamnose metabolic process
XaFJ1_GM000426	COG0738	Major facilitator superfamily
XaFJ1_GM000427	COG1414	Transcriptional regulator
XaFJ1_GM000429	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
XaFJ1_GM000432	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
XaFJ1_GM000434	COG0583	DNA-binding transcription factor activity
XaFJ1_GM000435	COG3634	alkyl hydroperoxide reductase activity
XaFJ1_GM000437	COG2890	protein-(glutamine-N5) methyltransferase activity
XaFJ1_GM000441	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
XaFJ1_GM000441	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
XaFJ1_GM000452	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
XaFJ1_GM000457	COG1295	ribonuclease BN
XaFJ1_GM000458	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
XaFJ1_GM000460	COG0521	Mo-molybdopterin cofactor biosynthetic process
XaFJ1_GM000462	COG5297	Belongs to the glycosyl hydrolase family 6
XaFJ1_GM000464	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
XaFJ1_GM000465	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
XaFJ1_GM000469	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
XaFJ1_GM000471	COG0193	aminoacyl-tRNA hydrolase activity
XaFJ1_GM000472	COG0012	GTP binding
XaFJ1_GM000475	COG0250	Participates in transcription elongation, termination and antitermination
XaFJ1_GM000476	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
XaFJ1_GM000478	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
XaFJ1_GM000479	COG0222	ribosome binding
XaFJ1_GM000480	COG0085	RNA polymerase activity
XaFJ1_GM000481	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
XaFJ1_GM000483	COG0049	tRNA binding
XaFJ1_GM000484	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
XaFJ1_GM000486	COG0051	transcription antitermination factor activity, RNA binding
XaFJ1_GM000488	COG0088	Forms part of the polypeptide exit tunnel
XaFJ1_GM000489	COG0089	rRNA binding
XaFJ1_GM000490	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
XaFJ1_GM000495	COG0255	Belongs to the universal ribosomal protein uL29 family
XaFJ1_GM000496	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
XaFJ1_GM000498	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
XaFJ1_GM000499	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
XaFJ1_GM000500	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
XaFJ1_GM000503	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
XaFJ1_GM000505	COG1841	ribosomal large subunit assembly
XaFJ1_GM000507	COG0201	protein transport
XaFJ1_GM000508	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
XaFJ1_GM000510	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
XaFJ1_GM000512	COG0203	ribosomal protein L17
XaFJ1_GM000513	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
XaFJ1_GM000515	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
XaFJ1_GM000518	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
XaFJ1_GM000520	COG0039	L-malate dehydrogenase activity
XaFJ1_GM000522	COG0625	glutathione transferase activity
XaFJ1_GM000527	COG0584	glycerophosphoryl diester phosphodiesterase
XaFJ1_GM000530	COG0446	pyridine nucleotide-disulphide oxidoreductase
XaFJ1_GM000530	COG1902	pentaerythritol trinitrate reductase activity
XaFJ1_GM000532	COG2885	chlorophyll binding
XaFJ1_GM000534	COG1187	pseudouridine synthase activity
XaFJ1_GM000535	COG0156	8-amino-7-oxononanoate synthase activity
XaFJ1_GM000538	COG0588	phosphoglycerate mutase activity
XaFJ1_GM000539	COG0285	dihydrofolate synthase activity
XaFJ1_GM000543	COG2833	Protein of unknown function (DUF455)
XaFJ1_GM000544	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
XaFJ1_GM000546	COG0438	transferase activity, transferring glycosyl groups
XaFJ1_GM000547	COG0248	Ppx GppA phosphatase
XaFJ1_GM000548	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
XaFJ1_GM000551	COG4783	chaperone-mediated protein folding
XaFJ1_GM000554	COG0473	3-isopropylmalate dehydrogenase activity
XaFJ1_GM000556	COG0544	peptidyl-prolyl cis-trans isomerase activity
XaFJ1_GM000561	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
XaFJ1_GM000563	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
XaFJ1_GM000565	COG0328	RNA-DNA hybrid ribonuclease activity
XaFJ1_GM000566	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
XaFJ1_GM000567	COG0631	protein serine/threonine phosphatase activity
XaFJ1_GM000569	COG0859	PFAM glycosyl transferase family 9
XaFJ1_GM000570	COG3642	lipopolysaccharide core region biosynthetic process
XaFJ1_GM000571	COG1234	tRNA 3'-trailer cleavage
XaFJ1_GM000572	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
XaFJ1_GM000574	COG0315	cyclic pyranopterin monophosphate synthase activity
XaFJ1_GM000575	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
XaFJ1_GM000576	COG0314	molybdopterin synthase activity
XaFJ1_GM000577	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
XaFJ1_GM000581	COG0537	adenosine 5'-monophosphoramidase activity
XaFJ1_GM000585	COG0714	Associated with various cellular activities
XaFJ1_GM000589	COG1399	metal-binding, possibly nucleic acid-binding protein
XaFJ1_GM000590	COG0333	Belongs to the bacterial ribosomal protein bL32 family
XaFJ1_GM000591	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
XaFJ1_GM000592	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
XaFJ1_GM000593	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_GM000596	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
XaFJ1_GM000597	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
XaFJ1_GM000598	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
XaFJ1_GM000605	COG0372	Belongs to the citrate synthase family
XaFJ1_GM000608	COG4771	TonB-dependent receptor
XaFJ1_GM000611	COG4771	TonB-dependent receptor
XaFJ1_GM000615	COG0840	transmembrane signaling receptor activity
XaFJ1_GM000617	COG0678	peroxiredoxin activity
XaFJ1_GM000621	COG0604	alcohol dehydrogenase
XaFJ1_GM000622	COG0330	HflC and HflK could
XaFJ1_GM000623	COG0330	HflC and HflK could
XaFJ1_GM000624	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
XaFJ1_GM000625	COG3511	phospholipase C
XaFJ1_GM000627	COG0189	ligase activity
XaFJ1_GM000629	COG0745	RESPONSE REGULATOR receiver
XaFJ1_GM000630	COG0642	Histidine kinase
XaFJ1_GM000632	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
XaFJ1_GM000661	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
XaFJ1_GM000661	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
XaFJ1_GM000663	COG1262	PFAM Formylglycine-generating sulfatase enzyme
XaFJ1_GM000665	COG1174	glycine betaine transport
XaFJ1_GM000666	COG1125	glycine betaine transport
XaFJ1_GM000667	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
XaFJ1_GM000668	COG0564	pseudouridine synthase activity
XaFJ1_GM000671	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
XaFJ1_GM000672	COG3387	PFAM Glycoside hydrolase 15-related
XaFJ1_GM000673	COG1877	trehalose-phosphatase activity
XaFJ1_GM000685	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
XaFJ1_GM000686	COG1136	(ABC) transporter
XaFJ1_GM000687	COG0577	efflux transmembrane transporter activity
XaFJ1_GM000693	COG0542	response to heat
XaFJ1_GM000696	COG0019	diaminopimelate decarboxylase activity
XaFJ1_GM000697	COG4264	IucA IucC family
XaFJ1_GM000698	COG2814	Major facilitator Superfamily
XaFJ1_GM000699	COG4264	IucA IucC family
XaFJ1_GM000701	COG4772	TonB-dependent receptor
XaFJ1_GM000703	COG4651	solute:proton antiporter activity
XaFJ1_GM000703	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
XaFJ1_GM000709	COG4206	TonB-dependent receptor
XaFJ1_GM000710	COG2211	Major facilitator Superfamily
XaFJ1_GM000712	COG2199	diguanylate cyclase activity
XaFJ1_GM000712	COG2203	Gaf domain
XaFJ1_GM000716	COG1301	dicarboxylic acid transport
XaFJ1_GM000723	COG1560	Kdo2-lipid A biosynthetic process
XaFJ1_GM000724	COG1519	Transferase
XaFJ1_GM000725	COG1538	Outer membrane efflux protein
XaFJ1_GM000726	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
XaFJ1_GM000728	COG5001	Diguanylate cyclase
XaFJ1_GM000728	COG3300	MHYT domain
XaFJ1_GM000729	COG0473	3-isopropylmalate dehydrogenase activity
XaFJ1_GM000732	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
XaFJ1_GM000734	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
XaFJ1_GM000738	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
XaFJ1_GM000739	COG0840	transmembrane signaling receptor activity
XaFJ1_GM000742	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
XaFJ1_GM000744	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
XaFJ1_GM000749	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
XaFJ1_GM000755	COG0586	Pfam SNARE associated Golgi protein
XaFJ1_GM000758	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
XaFJ1_GM000759	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
XaFJ1_GM000761	COG1773	rubredoxin
XaFJ1_GM000762	COG2912	Transglutaminase-like superfamily
XaFJ1_GM000764	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
XaFJ1_GM000766	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
XaFJ1_GM000771	COG0006	proline dipeptidase activity
XaFJ1_GM000772	COG0006	proline dipeptidase activity
XaFJ1_GM000775	COG0635	Involved in the biosynthesis of porphyrin-containing compound
XaFJ1_GM000778	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
XaFJ1_GM000779	COG1561	YicC-like family, N-terminal region
XaFJ1_GM000780	COG0194	GDP metabolic process
XaFJ1_GM000781	COG1758	RNA polymerase activity
XaFJ1_GM000782	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
XaFJ1_GM000784	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
XaFJ1_GM000786	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
XaFJ1_GM000787	COG1077	Cell shape determining protein MreB Mrl
XaFJ1_GM000788	COG1792	Involved in formation and maintenance of cell shape
XaFJ1_GM000789	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
XaFJ1_GM000790	COG0768	penicillin binding
XaFJ1_GM000791	COG0772	Belongs to the SEDS family
XaFJ1_GM000793	COG5434	Belongs to the glycosyl hydrolase 28 family
XaFJ1_GM000794	COG2951	lytic endotransglycosylase activity
XaFJ1_GM000796	COG1686	Belongs to the peptidase S11 family
XaFJ1_GM000797	COG2921	Belongs to the UPF0250 family
XaFJ1_GM000798	COG0321	lipoyl(octanoyl) transferase activity
XaFJ1_GM000799	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
XaFJ1_GM000803	COG1051	belongs to the nudix hydrolase family
XaFJ1_GM000803	COG1056	cytidyltransferase-related domain
XaFJ1_GM000807	COG1090	epimerase
XaFJ1_GM000809	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
XaFJ1_GM000812	COG2205	protein histidine kinase activity
XaFJ1_GM000812	COG2202	Pas domain
XaFJ1_GM000813	COG0784	Response regulator, receiver
XaFJ1_GM000814	COG4191	Histidine kinase
XaFJ1_GM000815	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
XaFJ1_GM000820	COG4305	rare lipoprotein A
XaFJ1_GM000822	COG2188	Transcriptional regulator
XaFJ1_GM000824	COG1609	Transcriptional regulator
XaFJ1_GM000825	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
XaFJ1_GM000826	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
XaFJ1_GM000828	COG0741	lytic transglycosylase activity
XaFJ1_GM000830	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
XaFJ1_GM000836	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
XaFJ1_GM000839	COG0218	Necessary for normal cell division and for the maintenance of normal septation
XaFJ1_GM000844	COG2205	protein histidine kinase activity
XaFJ1_GM000845	COG0745	RESPONSE REGULATOR receiver
XaFJ1_GM000846	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
XaFJ1_GM000852	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
XaFJ1_GM000855	COG0436	Aminotransferase
XaFJ1_GM000856	COG1162	GTPase activity
XaFJ1_GM000858	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
XaFJ1_GM000858	COG5297	Belongs to the glycosyl hydrolase family 6
XaFJ1_GM000861	COG2814	Major facilitator Superfamily
XaFJ1_GM000869	COG2194	sulfuric ester hydrolase activity
XaFJ1_GM000871	COG0745	RESPONSE REGULATOR receiver
XaFJ1_GM000872	COG2205	protein histidine kinase activity
XaFJ1_GM000874	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
XaFJ1_GM000875	COG2894	cell division
XaFJ1_GM000878	COG4585	Histidine kinase
XaFJ1_GM000887	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
XaFJ1_GM000889	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
XaFJ1_GM000892	COG1946	Acyl-CoA thioesterase
XaFJ1_GM000893	COG1250	3-hydroxyacyl-CoA dehydrogenase
XaFJ1_GM000893	COG1024	Enoyl-CoA hydratase
XaFJ1_GM000895	COG0824	Thioesterase
XaFJ1_GM000896	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
XaFJ1_GM000897	COG0261	This protein binds to 23S rRNA in the presence of protein L20
XaFJ1_GM000898	COG0211	Belongs to the bacterial ribosomal protein bL27 family
XaFJ1_GM000899	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
XaFJ1_GM000902	COG0196	riboflavin kinase activity
XaFJ1_GM000908	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
XaFJ1_GM000909	COG1845	cytochrome c oxidase, subunit III
XaFJ1_GM000910	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
XaFJ1_GM000912	COG0156	8-amino-7-oxononanoate synthase activity
XaFJ1_GM000915	COG0129	dihydroxy-acid dehydratase activity
XaFJ1_GM000919	COG1879	ABC-type sugar transport system periplasmic component
XaFJ1_GM000920	COG1129	ABC transporter
XaFJ1_GM000921	COG1172	Belongs to the binding-protein-dependent transport system permease family
XaFJ1_GM000922	COG1172	Belongs to the binding-protein-dependent transport system permease family
XaFJ1_GM000923	COG0475	glutathione-regulated potassium exporter activity
XaFJ1_GM000926	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
XaFJ1_GM000927	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
XaFJ1_GM000928	COG2070	2-Nitropropane dioxygenase
XaFJ1_GM000931	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
XaFJ1_GM000933	COG0335	large ribosomal subunit rRNA binding
XaFJ1_GM000934	COG0534	Mate efflux family protein
XaFJ1_GM000936	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
XaFJ1_GM000941	COG3590	peptidase
XaFJ1_GM000943	COG4206	TonB-dependent receptor
XaFJ1_GM000944	COG0489	protein tyrosine kinase activity
XaFJ1_GM000945	COG0717	Belongs to the dCTP deaminase family
XaFJ1_GM000950	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
XaFJ1_GM000954	COG2890	protein-(glutamine-N5) methyltransferase activity
XaFJ1_GM000955	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
XaFJ1_GM000956	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
XaFJ1_GM000957	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
XaFJ1_GM000972	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_GM000973	COG0149	triose-phosphate isomerase activity
XaFJ1_GM000974	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
XaFJ1_GM000975	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
XaFJ1_GM000977	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
XaFJ1_GM000978	COG0649	NAD binding
XaFJ1_GM000979	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
XaFJ1_GM000980	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
XaFJ1_GM000981	COG1034	ATP synthesis coupled electron transport
XaFJ1_GM000982	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
XaFJ1_GM000988	COG1007	ATP synthesis coupled electron transport
XaFJ1_GM000990	COG0195	Participates in both transcription termination and antitermination
XaFJ1_GM000992	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
XaFJ1_GM000995	COG1185	polyribonucleotide nucleotidyltransferase activity
XaFJ1_GM000996	COG3300	MHYT domain
XaFJ1_GM000996	COG5001	Diguanylate cyclase
XaFJ1_GM001001	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
XaFJ1_GM001002	COG0719	Fe-S assembly protein
XaFJ1_GM001003	COG0396	ATPase activity
XaFJ1_GM001004	COG3755	Protein conserved in bacteria
XaFJ1_GM001005	COG0719	Fe-S assembly protein
XaFJ1_GM001012	COG0384	phenazine biosynthesis protein PhzF
XaFJ1_GM001013	COG0527	aspartate kinase activity
XaFJ1_GM001017	COG0142	geranyltranstransferase activity
XaFJ1_GM001018	COG0629	single-stranded DNA binding
XaFJ1_GM001021	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
XaFJ1_GM001024	COG1012	belongs to the aldehyde dehydrogenase family
XaFJ1_GM001026	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
XaFJ1_GM001029	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
XaFJ1_GM001036	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
XaFJ1_GM001040	COG1024	Enoyl-CoA hydratase
XaFJ1_GM001041	COG1024	Enoyl-CoA hydratase
XaFJ1_GM001043	COG1024	Enoyl-CoA hydratase
XaFJ1_GM001048	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
XaFJ1_GM001049	COG3104	oligopeptide transport
XaFJ1_GM001050	COG1297	OPT oligopeptide transporter protein
XaFJ1_GM001051	COG0823	Involved in the tonB-independent uptake of proteins
XaFJ1_GM001051	COG1506	peptidase
XaFJ1_GM001057	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
XaFJ1_GM001059	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
XaFJ1_GM001060	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
XaFJ1_GM001068	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
XaFJ1_GM001070	COG1960	acyl-CoA dehydrogenase activity
XaFJ1_GM001075	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
XaFJ1_GM001075	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
XaFJ1_GM001077	COG0860	N-Acetylmuramoyl-L-alanine amidase
XaFJ1_GM001078	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
XaFJ1_GM001082	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_GM001088	COG2081	HI0933 family
XaFJ1_GM001089	COG4681	YaeQ
XaFJ1_GM001091	COG0625	glutathione transferase activity
XaFJ1_GM001095	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
XaFJ1_GM001097	COG0513	Belongs to the DEAD box helicase family
XaFJ1_GM001101	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
XaFJ1_GM001103	COG1472	Belongs to the glycosyl hydrolase 3 family
XaFJ1_GM001112	COG0386	Belongs to the glutathione peroxidase family
XaFJ1_GM001122	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
XaFJ1_GM001123	COG0084	hydrolase, TatD family'
XaFJ1_GM001126	COG0305	Participates in initiation and elongation during chromosome replication
XaFJ1_GM001127	COG0415	Belongs to the DNA photolyase family
XaFJ1_GM001129	COG3047	cAMP biosynthetic process
XaFJ1_GM001129	COG2885	chlorophyll binding
XaFJ1_GM001130	COG3706	GGDEF domain
XaFJ1_GM001132	COG1819	glycosyl
XaFJ1_GM001133	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
XaFJ1_GM001137	COG2877	3-deoxy-8-phosphooctulonate synthase activity
XaFJ1_GM001139	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
XaFJ1_GM001140	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
XaFJ1_GM001141	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
XaFJ1_GM001143	COG2840	Smr protein MutS2
XaFJ1_GM001144	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
XaFJ1_GM001149	COG1534	Rna-binding protein
XaFJ1_GM001150	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
XaFJ1_GM001151	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
XaFJ1_GM001152	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
XaFJ1_GM001153	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
XaFJ1_GM001155	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
XaFJ1_GM001156	COG1546	Belongs to the CinA family
XaFJ1_GM001157	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
XaFJ1_GM001158	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
XaFJ1_GM001159	COG2137	regulation of response to DNA damage stimulus
XaFJ1_GM001160	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
XaFJ1_GM001161	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
XaFJ1_GM001164	COG0351	phosphomethylpyrimidine kinase
XaFJ1_GM001164	COG0352	thiamine-phosphate diphosphorylase activity
XaFJ1_GM001167	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
XaFJ1_GM001168	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
XaFJ1_GM001170	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
XaFJ1_GM001172	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
XaFJ1_GM001173	COG3734	2-keto-3-deoxy-galactonokinase
XaFJ1_GM001175	COG4948	Mandelate Racemase Muconate Lactonizing
XaFJ1_GM001176	COG0800	Aldolase
XaFJ1_GM001180	COG1501	Belongs to the glycosyl hydrolase 31 family
XaFJ1_GM001181	COG1070	Carbohydrate kinase
XaFJ1_GM001183	COG0477	Major facilitator Superfamily
XaFJ1_GM001185	COG0860	N-Acetylmuramoyl-L-alanine amidase
XaFJ1_GM001187	COG0617	tRNA 3'-terminal CCA addition
XaFJ1_GM001189	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
XaFJ1_GM001192	COG0166	Belongs to the GPI family
XaFJ1_GM001193	COG1472	Belongs to the glycosyl hydrolase 3 family
XaFJ1_GM001196	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
XaFJ1_GM001199	COG0210	DNA helicase
XaFJ1_GM001201	COG0812	UDP-N-acetylmuramate dehydrogenase activity
XaFJ1_GM001202	COG0167	dihydroorotate dehydrogenase activity
XaFJ1_GM001205	COG1012	belongs to the aldehyde dehydrogenase family
XaFJ1_GM001216	COG1136	(ABC) transporter
XaFJ1_GM001216	COG0577	efflux transmembrane transporter activity
XaFJ1_GM001228	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
XaFJ1_GM001230	COG0124	histidyl-tRNA synthetase
XaFJ1_GM001233	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
XaFJ1_GM001234	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
XaFJ1_GM001235	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
XaFJ1_GM001240	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
XaFJ1_GM001240	COG0140	phosphoribosyl-ATP diphosphatase activity
XaFJ1_GM001241	COG1702	phosphate starvation-inducible protein PhoH
XaFJ1_GM001243	COG0741	lytic transglycosylase activity
XaFJ1_GM001244	COG0723	plastoquinol--plastocyanin reductase activity
XaFJ1_GM001245	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
XaFJ1_GM001246	COG2857	Cytochrome c1
XaFJ1_GM001247	COG0625	glutathione transferase activity
XaFJ1_GM001248	COG2969	positive regulation of protein catabolic process
XaFJ1_GM001255	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
XaFJ1_GM001256	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_GM001257	COG2095	MarC family integral membrane protein
XaFJ1_GM001259	COG1611	Belongs to the LOG family
XaFJ1_GM001260	COG3275	phosphorelay sensor kinase activity
XaFJ1_GM001268	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
XaFJ1_GM001277	COG4133	protoheme IX ABC transporter activity
XaFJ1_GM001278	COG0436	Aminotransferase
XaFJ1_GM001281	COG2203	Gaf domain
XaFJ1_GM001281	COG2200	EAL domain
XaFJ1_GM001281	COG2199	diguanylate cyclase activity
XaFJ1_GM001282	COG2205	protein histidine kinase activity
XaFJ1_GM001282	COG0784	Response regulator, receiver
XaFJ1_GM001288	COG1187	pseudouridine synthase activity
XaFJ1_GM001289	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
XaFJ1_GM001290	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
XaFJ1_GM001291	COG2350	Protein conserved in bacteria
XaFJ1_GM001296	COG0395	ABC-type sugar transport system, permease component
XaFJ1_GM001299	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
XaFJ1_GM001300	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
XaFJ1_GM001301	COG0235	Class ii aldolase
XaFJ1_GM001302	COG0531	amino acid
XaFJ1_GM001303	COG0531	amino acid
XaFJ1_GM001305	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
XaFJ1_GM001307	COG0277	FAD linked oxidase domain protein
XaFJ1_GM001310	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
XaFJ1_GM001313	COG1024	Enoyl-CoA hydratase
XaFJ1_GM001318	COG0505	Belongs to the CarA family
XaFJ1_GM001320	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
XaFJ1_GM001321	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
XaFJ1_GM001323	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
XaFJ1_GM001324	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
XaFJ1_GM001327	COG0784	Response regulator, receiver
XaFJ1_GM001327	COG2198	Histidine kinase
XaFJ1_GM001327	COG2205	protein histidine kinase activity
XaFJ1_GM001329	COG0318	PFAM AMP-dependent synthetase and ligase
XaFJ1_GM001338	COG0840	transmembrane signaling receptor activity
XaFJ1_GM001340	COG0835	chemotaxis
XaFJ1_GM001343	COG0840	transmembrane signaling receptor activity
XaFJ1_GM001344	COG0840	transmembrane signaling receptor activity
XaFJ1_GM001346	COG0840	transmembrane signaling receptor activity
XaFJ1_GM001348	COG0840	transmembrane signaling receptor activity
XaFJ1_GM001350	COG0745	RESPONSE REGULATOR receiver
XaFJ1_GM001352	COG0835	chemotaxis
XaFJ1_GM001353	COG1192	Involved in chromosome partitioning
XaFJ1_GM001354	COG1360	Flagellar Motor Protein
XaFJ1_GM001355	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
XaFJ1_GM001356	COG0784	Response regulator, receiver
XaFJ1_GM001356	COG2198	Histidine kinase
XaFJ1_GM001356	COG0643	Histidine kinase
XaFJ1_GM001357	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
XaFJ1_GM001364	COG1684	flagellar biosynthetic protein fliR
XaFJ1_GM001367	COG3190	flagellar
XaFJ1_GM001375	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
XaFJ1_GM001377	COG1677	Flagellar hook-basal body complex protein FliE
XaFJ1_GM001382	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_GM001383	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_GM001384	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
XaFJ1_GM001388	COG2201	protein-glutamate methylesterase activity
XaFJ1_GM001390	COG2197	response regulator
XaFJ1_GM001396	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
XaFJ1_GM001399	COG1256	bacterial-type flagellum assembly
XaFJ1_GM001402	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
XaFJ1_GM001404	COG4787	bacterial-type flagellum-dependent cell motility
XaFJ1_GM001405	COG1749	Flagellar hook protein flgE
XaFJ1_GM001406	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
XaFJ1_GM001407	COG1558	bacterial-type flagellum-dependent cell motility
XaFJ1_GM001409	COG0784	Response regulator, receiver
XaFJ1_GM001409	COG0835	chemotaxis
XaFJ1_GM001418	COG1116	anion transmembrane transporter activity
XaFJ1_GM001420	COG0840	transmembrane signaling receptor activity
XaFJ1_GM001421	COG2915	High frequency lysogenization protein hflD homolog
XaFJ1_GM001422	COG0482	sulfurtransferase activity
XaFJ1_GM001425	COG0542	response to heat
XaFJ1_GM001429	COG0492	ferredoxin-NADP+ reductase activity
XaFJ1_GM001430	COG1674	ftsk spoiiie
XaFJ1_GM001433	COG1230	cation diffusion facilitator family transporter
XaFJ1_GM001434	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
XaFJ1_GM001435	COG0038	chloride channel
XaFJ1_GM001445	COG1595	DNA-templated transcription, initiation
XaFJ1_GM001449	COG3038	cytochrome b561
XaFJ1_GM001473	COG2207	Transcriptional regulator
XaFJ1_GM001482	COG4790	Type iii secretion
XaFJ1_GM001493	COG2963	transposase activity
XaFJ1_GM001494	COG2192	nodulation
XaFJ1_GM001501	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
XaFJ1_GM001504	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
XaFJ1_GM001510	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
XaFJ1_GM001510	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
XaFJ1_GM001510	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_GM001510	COG3321	synthase
XaFJ1_GM001510	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
XaFJ1_GM001512	COG2050	protein possibly involved in aromatic compounds catabolism
XaFJ1_GM001535	COG5000	phosphorelay sensor kinase activity
XaFJ1_GM001535	COG5002	protein histidine kinase activity
XaFJ1_GM001538	COG3713	MltA-interacting MipA family protein
XaFJ1_GM001539	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
XaFJ1_GM001543	COG1196	nuclear chromosome segregation
XaFJ1_GM001561	COG0582	viral genome integration into host DNA
XaFJ1_GM001567	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
XaFJ1_GM001568	COG0303	'Molybdopterin
XaFJ1_GM001569	COG0746	molybdenum cofactor guanylyltransferase activity
XaFJ1_GM001570	COG1160	GTP binding
XaFJ1_GM001571	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
XaFJ1_GM001576	COG0820	rRNA (adenine-C2-)-methyltransferase activity
XaFJ1_GM001579	COG1250	3-hydroxyacyl-CoA dehydrogenase
XaFJ1_GM001579	COG1024	Enoyl-CoA hydratase
XaFJ1_GM001580	COG0183	Belongs to the thiolase family
XaFJ1_GM001582	COG1210	Utp--glucose-1-phosphate uridylyltransferase
XaFJ1_GM001584	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
XaFJ1_GM001585	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
XaFJ1_GM001587	COG0776	regulation of translation
XaFJ1_GM001590	COG0257	Belongs to the bacterial ribosomal protein bL36 family
XaFJ1_GM001592	COG2957	Belongs to the agmatine deiminase family
XaFJ1_GM001593	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
XaFJ1_GM001598	COG0316	Belongs to the HesB IscA family
XaFJ1_GM001598	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
XaFJ1_GM001601	COG3064	Membrane
XaFJ1_GM001603	COG1530	ribonuclease E activity
XaFJ1_GM001620	COG0582	viral genome integration into host DNA
XaFJ1_GM001622	COG2205	protein histidine kinase activity
XaFJ1_GM001622	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
XaFJ1_GM001623	COG2183	response to ionizing radiation
XaFJ1_GM001624	COG0784	Response regulator, receiver
XaFJ1_GM001624	COG4191	Histidine kinase
XaFJ1_GM001626	COG3243	poly(R)-hydroxyalkanoic acid synthase
XaFJ1_GM001628	COG1183	phosphatidylcholine synthase activity
XaFJ1_GM001629	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_GM001634	COG0668	transmembrane transport
XaFJ1_GM001635	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
XaFJ1_GM001637	COG1321	iron dependent repressor
XaFJ1_GM001638	COG1914	H( )-stimulated, divalent metal cation uptake system
XaFJ1_GM001639	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
XaFJ1_GM001641	COG2900	Belongs to the SlyX family
XaFJ1_GM001644	COG0386	Belongs to the glutathione peroxidase family
XaFJ1_GM001646	COG1725	Transcriptional regulator
XaFJ1_GM001647	COG1131	(ABC) transporter
XaFJ1_GM001655	COG2850	peptidyl-arginine hydroxylation
XaFJ1_GM001657	COG0567	Dehydrogenase, E1 component
XaFJ1_GM001662	COG1739	Uncharacterized protein family UPF0029
XaFJ1_GM001663	COG1132	(ABC) transporter
XaFJ1_GM001664	COG0287	Prephenate dehydrogenase
XaFJ1_GM001664	COG1605	Chorismate mutase
XaFJ1_GM001666	COG0484	heat shock protein binding
XaFJ1_GM001667	COG0443	Heat shock 70 kDa protein
XaFJ1_GM001668	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
XaFJ1_GM001669	COG1420	regulation of RNA biosynthetic process
XaFJ1_GM001670	COG0497	DNA recombination
XaFJ1_GM001671	COG0735	belongs to the Fur family
XaFJ1_GM001672	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
XaFJ1_GM001675	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
XaFJ1_GM001676	COG1253	flavin adenine dinucleotide binding
XaFJ1_GM001682	COG1635	Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur
XaFJ1_GM001683	COG5001	Diguanylate cyclase
XaFJ1_GM001684	COG0069	glutamate synthase activity
XaFJ1_GM001685	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
XaFJ1_GM001689	COG0583	DNA-binding transcription factor activity
XaFJ1_GM001693	COG1605	Chorismate mutase
XaFJ1_GM001693	COG0077	Prephenate dehydratase
XaFJ1_GM001694	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
XaFJ1_GM001695	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
XaFJ1_GM001703	COG4221	oxidoreductase activity
XaFJ1_GM001706	COG1228	amidohydrolase
XaFJ1_GM001709	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
XaFJ1_GM001718	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
XaFJ1_GM001719	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
XaFJ1_GM001720	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
XaFJ1_GM001724	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
XaFJ1_GM001727	COG0316	Belongs to the HesB IscA family
XaFJ1_GM001741	COG0288	reversible hydration of carbon dioxide
XaFJ1_GM001742	COG0662	Cupin 2, conserved barrel domain protein
XaFJ1_GM001746	COG2925	Exonuclease
XaFJ1_GM001751	COG2902	Dehydrogenase
XaFJ1_GM001753	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
XaFJ1_GM001754	COG1960	acyl-CoA dehydrogenase activity
XaFJ1_GM001755	COG2226	methyltransferase
XaFJ1_GM001762	COG1136	(ABC) transporter
XaFJ1_GM001773	COG4359	Dephosphorylates 2-hydroxy-3-keto-5-methylthiopentenyl- 1-phosphate (HK-MTPenyl-1-P) yielding 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene)
XaFJ1_GM001783	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
XaFJ1_GM001793	COG0582	viral genome integration into host DNA
XaFJ1_GM001794	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
XaFJ1_GM001797	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
XaFJ1_GM001799	COG1663	tetraacyldisaccharide 4'-kinase activity
XaFJ1_GM001802	COG0811	peptide transport
XaFJ1_GM001805	COG4591	ABC-type transport system involved in lipoprotein release permease component
XaFJ1_GM001808	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
XaFJ1_GM001811	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
XaFJ1_GM001812	COG2009	succinate dehydrogenase
XaFJ1_GM001813	COG0354	folic acid binding
XaFJ1_GM001815	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
XaFJ1_GM001819	COG0800	Aldolase
XaFJ1_GM001824	COG2948	multi-organism process
XaFJ1_GM001831	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
XaFJ1_GM001853	COG0556	nucleotide-excision repair
XaFJ1_GM001856	COG2963	transposase activity
XaFJ1_GM001860	COG2801	Transposase and inactivated derivatives
XaFJ1_GM001862	COG1017	nitric oxide dioxygenase activity
XaFJ1_GM001862	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
XaFJ1_GM001873	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
XaFJ1_GM001876	COG0165	Argininosuccinate lyase
XaFJ1_GM001879	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
XaFJ1_GM001880	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
XaFJ1_GM001882	COG0137	argininosuccinate synthase activity
XaFJ1_GM001883	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
XaFJ1_GM001886	COG2166	iron-sulfur cluster assembly
XaFJ1_GM001894	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
XaFJ1_GM001900	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
XaFJ1_GM001902	COG4677	pectinesterase activity
XaFJ1_GM001903	COG5434	Belongs to the glycosyl hydrolase 28 family
XaFJ1_GM001907	COG0402	S-adenosylhomocysteine deaminase activity
XaFJ1_GM001909	COG1509	lysine 2,3-aminomutase activity
XaFJ1_GM001910	COG2951	lytic endotransglycosylase activity
XaFJ1_GM001913	COG0840	transmembrane signaling receptor activity
XaFJ1_GM001914	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
XaFJ1_GM001915	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
XaFJ1_GM001916	COG1862	Preprotein translocase
XaFJ1_GM001918	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
XaFJ1_GM001920	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
XaFJ1_GM001921	COG3291	Pkd domain containing protein
XaFJ1_GM001922	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
XaFJ1_GM001926	COG0644	oxidoreductase
XaFJ1_GM001927	COG0405	Gamma-glutamyltransferase
XaFJ1_GM001928	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
XaFJ1_GM001931	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
XaFJ1_GM001932	COG0742	ribosomal rna small subunit methyltransferase
XaFJ1_GM001935	COG3345	alpha-galactosidase
XaFJ1_GM001947	COG0531	amino acid
XaFJ1_GM001950	COG0006	proline dipeptidase activity
XaFJ1_GM001952	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
XaFJ1_GM001955	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
XaFJ1_GM001956	COG3938	Belongs to the proline racemase family
XaFJ1_GM001958	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
XaFJ1_GM001962	COG0686	Belongs to the AlaDH PNT family
XaFJ1_GM001963	COG2733	membrane
XaFJ1_GM001964	COG3850	Histidine kinase
XaFJ1_GM001964	COG4999	Histidine kinase
XaFJ1_GM001964	COG3437	response regulator, receiver
XaFJ1_GM001964	COG2205	protein histidine kinase activity
XaFJ1_GM001965	COG3437	response regulator, receiver
XaFJ1_GM001973	COG0494	nUDIX hydrolase
XaFJ1_GM001975	COG1024	Enoyl-CoA hydratase
XaFJ1_GM001977	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
XaFJ1_GM001979	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
XaFJ1_GM001981	COG0573	inorganic phosphate transmembrane transporter activity
XaFJ1_GM001982	COG0581	inorganic phosphate transmembrane transporter activity
XaFJ1_GM001984	COG0704	Plays a role in the regulation of phosphate uptake
XaFJ1_GM001988	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
XaFJ1_GM001990	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
XaFJ1_GM001992	COG0557	exoribonuclease II activity
XaFJ1_GM001998	COG2814	Major facilitator Superfamily
XaFJ1_GM001999	COG1566	PFAM secretion protein HlyD family protein
XaFJ1_GM002006	COG0367	asparagine synthase
XaFJ1_GM002008	COG1393	Belongs to the ArsC family
XaFJ1_GM002010	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
XaFJ1_GM002011	COG0024	Methionine aminopeptidase
XaFJ1_GM002019	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
XaFJ1_GM002021	COG0528	UMP kinase activity
XaFJ1_GM002023	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
XaFJ1_GM002024	COG0575	Belongs to the CDS family
XaFJ1_GM002025	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
XaFJ1_GM002026	COG0750	zinc metalloprotease
XaFJ1_GM002028	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
XaFJ1_GM002030	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
XaFJ1_GM002045	COG1187	pseudouridine synthase activity
XaFJ1_GM002057	COG0735	belongs to the Fur family
XaFJ1_GM002060	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
XaFJ1_GM002062	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
XaFJ1_GM002064	COG0588	phosphoglycerate mutase activity
XaFJ1_GM002065	COG1515	deoxyribonuclease V activity
XaFJ1_GM002067	COG1741	Belongs to the pirin family
XaFJ1_GM002069	COG1966	Carbon starvation protein
XaFJ1_GM002070	COG2879	small protein
XaFJ1_GM002074	COG0552	protein localization to endoplasmic reticulum
XaFJ1_GM002075	COG1194	a g-specific adenine glycosylase
XaFJ1_GM002081	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
XaFJ1_GM002083	COG4535	Mg2 and Co2 transporter CorC
XaFJ1_GM002085	COG0598	Magnesium transport protein CorA
XaFJ1_GM002086	COG1012	belongs to the aldehyde dehydrogenase family
XaFJ1_GM002087	COG1177	transmembrane transport
XaFJ1_GM002088	COG1176	ABC-type spermidine putrescine transport system, permease component I
XaFJ1_GM002089	COG3842	ATPase activity
XaFJ1_GM002093	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
XaFJ1_GM002094	COG0174	glutamine synthetase
XaFJ1_GM002095	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
XaFJ1_GM002097	COG0477	Major facilitator Superfamily
XaFJ1_GM002099	COG0784	Response regulator, receiver
XaFJ1_GM002099	COG2205	protein histidine kinase activity
XaFJ1_GM002099	COG5002	protein histidine kinase activity
XaFJ1_GM002101	COG0243	molybdopterin cofactor binding
XaFJ1_GM002103	COG1012	belongs to the aldehyde dehydrogenase family
XaFJ1_GM002110	COG3209	COG3209 Rhs family protein
XaFJ1_GM002119	COG3178	'Phosphotransferase
XaFJ1_GM002120	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
XaFJ1_GM002126	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
XaFJ1_GM002135	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
XaFJ1_GM002138	COG1137	ATPase activity
XaFJ1_GM002144	COG1660	Displays ATPase and GTPase activities
XaFJ1_GM002146	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
XaFJ1_GM002147	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
XaFJ1_GM002148	COG2239	Acts as a magnesium transporter
XaFJ1_GM002151	COG1113	amino acid transport
XaFJ1_GM002152	COG0840	transmembrane signaling receptor activity
XaFJ1_GM002153	COG0840	transmembrane signaling receptor activity
XaFJ1_GM002156	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
XaFJ1_GM002157	COG1678	Uncharacterized ACR, COG1678
XaFJ1_GM002160	COG0519	Catalyzes the synthesis of GMP from XMP
XaFJ1_GM002163	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
XaFJ1_GM002171	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
XaFJ1_GM002174	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
XaFJ1_GM002178	COG2353	YceI-like domain
XaFJ1_GM002179	COG3038	cytochrome b561
XaFJ1_GM002182	COG1760	l-serine dehydratase
XaFJ1_GM002183	COG3706	GGDEF domain
XaFJ1_GM002187	COG0460	homoserine dehydrogenase
XaFJ1_GM002187	COG0527	aspartate kinase activity
XaFJ1_GM002188	COG0626	cystathionine gamma-synthase activity
XaFJ1_GM002189	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
XaFJ1_GM002190	COG0739	heme binding
XaFJ1_GM002191	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
XaFJ1_GM002192	COG1272	protein, Hemolysin III
XaFJ1_GM002193	COG0517	IMP dehydrogenase activity
XaFJ1_GM002194	COG0463	Glycosyl transferase, family 2
XaFJ1_GM002196	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
XaFJ1_GM002198	COG4206	TonB-dependent receptor
XaFJ1_GM002206	COG0509	glycine decarboxylation via glycine cleavage system
XaFJ1_GM002207	COG0404	The glycine cleavage system catalyzes the degradation of glycine
XaFJ1_GM002209	COG0330	HflC and HflK could
XaFJ1_GM002211	COG3956	TIGRFAM MazG family protein
XaFJ1_GM002212	COG1218	3'(2'),5'-bisphosphate nucleotidase
XaFJ1_GM002213	COG0494	nUDIX hydrolase
XaFJ1_GM002215	COG1385	rRNA (uridine-N3-)-methyltransferase activity
XaFJ1_GM002218	COG0837	glucose binding
XaFJ1_GM002221	COG1388	LysM domain
XaFJ1_GM002221	COG3858	chitin binding
XaFJ1_GM002222	COG3525	Glycosyl hydrolase, family 20, catalytic domain
XaFJ1_GM002224	COG1472	Belongs to the glycosyl hydrolase 3 family
XaFJ1_GM002226	COG3537	Alpha-1,2-mannosidase
XaFJ1_GM002228	COG5001	Diguanylate cyclase
XaFJ1_GM002233	COG1446	asparaginase
XaFJ1_GM002234	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
XaFJ1_GM002235	COG0523	cobalamin synthesis protein
XaFJ1_GM002237	COG4774	siderophore transport
XaFJ1_GM002242	COG0784	Response regulator, receiver
XaFJ1_GM002242	COG2198	Histidine kinase
XaFJ1_GM002242	COG0643	Histidine kinase
XaFJ1_GM002243	COG0840	transmembrane signaling receptor activity
XaFJ1_GM002244	COG0835	chemotaxis
XaFJ1_GM002247	COG0189	ligase activity
XaFJ1_GM002251	COG1199	ATP-dependent helicase activity
XaFJ1_GM002253	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
XaFJ1_GM002254	COG1216	Glycosyl transferase, family 2
XaFJ1_GM002256	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
XaFJ1_GM002260	COG1643	Atp-dependent helicase
XaFJ1_GM002261	COG0783	Belongs to the Dps family
XaFJ1_GM002262	COG0514	ATP-dependent DNA helicase (RecQ)
XaFJ1_GM002267	COG0220	tRNA (guanine-N7-)-methyltransferase activity
XaFJ1_GM002268	COG0471	metal ion transport
XaFJ1_GM002268	COG3273	potassium ion transport
XaFJ1_GM002271	COG0179	Fumarylacetoacetate (FAA) hydrolase
XaFJ1_GM002274	COG2963	transposase activity
XaFJ1_GM002293	COG3210	domain, Protein
XaFJ1_GM002294	COG2831	hemolysin activation secretion protein
XaFJ1_GM002295	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
XaFJ1_GM002298	COG0438	transferase activity, transferring glycosyl groups
XaFJ1_GM002300	COG2895	sulfate adenylyltransferase (ATP) activity
XaFJ1_GM002300	COG0529	Catalyzes the synthesis of activated sulfate
XaFJ1_GM002301	COG0175	sulfate reduction
XaFJ1_GM002303	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
XaFJ1_GM002304	COG3588	fructose-bisphosphate aldolase
XaFJ1_GM002307	COG0469	pyruvate kinase activity
XaFJ1_GM002310	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
XaFJ1_GM002312	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
XaFJ1_GM002313	COG0640	Transcriptional regulator
XaFJ1_GM002314	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
XaFJ1_GM002314	COG3453	Protein conserved in bacteria
XaFJ1_GM002315	COG0725	ABC transporter, periplasmic molybdate-binding protein
XaFJ1_GM002316	COG4149	molybdate abc transporter
XaFJ1_GM002317	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
XaFJ1_GM002327	COG2801	Transposase and inactivated derivatives
XaFJ1_GM002341	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
XaFJ1_GM002353	COG0714	Associated with various cellular activities
XaFJ1_GM002359	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
XaFJ1_GM002362	COG0254	rRNA binding
XaFJ1_GM002366	COG2963	transposase activity
XaFJ1_GM002374	COG1280	lysine exporter protein (LysE YggA)
XaFJ1_GM002376	COG0174	glutamine synthetase
XaFJ1_GM002397	COG1475	DNA binding
XaFJ1_GM002404	COG3210	domain, Protein
XaFJ1_GM002419	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
XaFJ1_GM002420	COG0602	queuosine metabolic process
XaFJ1_GM002422	COG2885	chlorophyll binding
XaFJ1_GM002425	COG0848	biopolymer transport protein
XaFJ1_GM002427	COG0824	Thioesterase
XaFJ1_GM002429	COG3158	transport of potassium into the cell
XaFJ1_GM002430	COG0632	four-way junction helicase activity
XaFJ1_GM002436	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
XaFJ1_GM002443	COG0488	(ABC) transporter
XaFJ1_GM002447	COG2311	Membrane
XaFJ1_GM002449	COG0791	NLP P60 protein
XaFJ1_GM002450	COG0791	NLP P60 protein
XaFJ1_GM002453	COG1301	dicarboxylic acid transport
XaFJ1_GM002454	COG0037	tRNA processing
XaFJ1_GM002455	COG1722	exodeoxyribonuclease VII activity
XaFJ1_GM002456	COG0142	geranyltranstransferase activity
XaFJ1_GM002458	COG0312	modulator of DNA gyrase
XaFJ1_GM002460	COG0312	modulator of DNA gyrase
XaFJ1_GM002462	COG1530	ribonuclease E activity
XaFJ1_GM002467	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
XaFJ1_GM002477	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
XaFJ1_GM002480	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
XaFJ1_GM002483	COG0495	leucyl-tRNA aminoacylation
XaFJ1_GM002485	COG3118	belongs to the thioredoxin family
XaFJ1_GM002487	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
XaFJ1_GM002489	COG2040	homocysteine
XaFJ1_GM002491	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
XaFJ1_GM002491	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
XaFJ1_GM002493	COG2878	Part of a membrane complex involved in electron transport
XaFJ1_GM002496	COG1595	DNA-templated transcription, initiation
XaFJ1_GM002501	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
XaFJ1_GM002504	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
XaFJ1_GM002505	COG0251	oxidation-reduction process
XaFJ1_GM002506	COG0392	lysyltransferase activity
XaFJ1_GM002510	COG1902	pentaerythritol trinitrate reductase activity
XaFJ1_GM002514	COG2200	EAL domain
XaFJ1_GM002523	COG2205	protein histidine kinase activity
XaFJ1_GM002523	COG2198	Histidine kinase
XaFJ1_GM002523	COG0784	Response regulator, receiver
XaFJ1_GM002539	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
XaFJ1_GM002541	COG1472	Belongs to the glycosyl hydrolase 3 family
XaFJ1_GM002543	COG2954	triphosphatase activity
XaFJ1_GM002546	COG1381	Involved in DNA repair and RecF pathway recombination
XaFJ1_GM002547	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
XaFJ1_GM002550	COG0681	Belongs to the peptidase S26 family
XaFJ1_GM002551	COG0481	GTPase activity
XaFJ1_GM002552	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
XaFJ1_GM002555	COG1250	3-hydroxyacyl-CoA dehydrogenase
XaFJ1_GM002555	COG1024	Enoyl-CoA hydratase
XaFJ1_GM002557	COG2855	membrane
XaFJ1_GM002572	COG0596	Alpha beta hydrolase
XaFJ1_GM002572	COG0508	dehydrogenase complex catalyzes the overall conversion of
XaFJ1_GM002574	COG0308	aminopeptidase N
XaFJ1_GM002575	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
XaFJ1_GM002577	COG2226	methyltransferase
XaFJ1_GM002583	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
XaFJ1_GM002587	COG1505	serine-type exopeptidase activity
XaFJ1_GM002590	COG1733	regulation of RNA biosynthetic process
XaFJ1_GM002593	COG0181	hydroxymethylbilane synthase activity
XaFJ1_GM002595	COG0400	carboxylic ester hydrolase activity
XaFJ1_GM002598	COG2204	response regulator
XaFJ1_GM002600	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
XaFJ1_GM002608	COG4191	Histidine kinase
XaFJ1_GM002611	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
XaFJ1_GM002620	COG1714	RDD family
XaFJ1_GM002638	COG1475	DNA binding
XaFJ1_GM002662	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
XaFJ1_GM002668	COG1450	Type ii and iii secretion system protein
XaFJ1_GM002671	COG3166	PFAM Fimbrial assembly family protein
XaFJ1_GM002672	COG3156	type II secretion system protein K
XaFJ1_GM002673	COG4795	General secretion pathway protein
XaFJ1_GM002675	COG4970	Tfp pilus assembly protein FimT
XaFJ1_GM002676	COG2165	general secretion pathway protein
XaFJ1_GM002677	COG1459	type II secretion system
XaFJ1_GM002678	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
XaFJ1_GM002679	COG1404	Belongs to the peptidase S8 family
XaFJ1_GM002680	COG5295	Hep Hag repeat protein
XaFJ1_GM002681	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
XaFJ1_GM002681	COG0047	phosphoribosylformylglycinamidine synthase activity
XaFJ1_GM002682	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
XaFJ1_GM002683	COG4974	Belongs to the 'phage' integrase family
XaFJ1_GM002687	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
XaFJ1_GM002689	COG0525	valine-tRNA ligase activity
XaFJ1_GM002692	COG1183	phosphatidylcholine synthase activity
XaFJ1_GM002694	COG0442	prolyl-tRNA aminoacylation
XaFJ1_GM002697	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
XaFJ1_GM002698	COG1127	ABC transporter
XaFJ1_GM002699	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
XaFJ1_GM002699	COG3218	ABC-type transport auxiliary lipoprotein component
XaFJ1_GM002702	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
XaFJ1_GM002702	COG0644	oxidoreductase
XaFJ1_GM002712	COG2086	electron transfer activity
XaFJ1_GM002719	COG0438	transferase activity, transferring glycosyl groups
XaFJ1_GM002726	COG0626	cystathionine gamma-synthase activity
XaFJ1_GM002733	COG0625	glutathione transferase activity
XaFJ1_GM002735	COG0513	Belongs to the DEAD box helicase family
XaFJ1_GM002736	COG0720	synthase
XaFJ1_GM002738	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
XaFJ1_GM002739	COG1956	GAF domain-containing protein
XaFJ1_GM002741	COG4206	TonB-dependent receptor
XaFJ1_GM002742	COG0546	phosphoglycolate phosphatase activity
XaFJ1_GM002743	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
XaFJ1_GM002744	COG0339	signal peptide processing
XaFJ1_GM002745	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
XaFJ1_GM002750	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
XaFJ1_GM002753	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
XaFJ1_GM002757	COG3104	oligopeptide transport
XaFJ1_GM002758	COG3483	tryptophan 2,3-dioxygenase activity
XaFJ1_GM002760	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
XaFJ1_GM002762	COG1196	nuclear chromosome segregation
XaFJ1_GM002762	COG3264	Mechanosensitive ion channel
XaFJ1_GM002769	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
XaFJ1_GM002770	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
XaFJ1_GM002774	COG2096	Adenosyltransferase
XaFJ1_GM002777	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
XaFJ1_GM002778	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
XaFJ1_GM002780	COG2967	ApaG domain
XaFJ1_GM002781	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
XaFJ1_GM002786	COG0861	Integral membrane protein TerC family
XaFJ1_GM002787	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
XaFJ1_GM002788	COG0642	Histidine kinase
XaFJ1_GM002791	COG4181	ATPase activity
XaFJ1_GM002792	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
XaFJ1_GM002794	COG4771	TonB-dependent receptor
XaFJ1_GM002796	COG0667	Aldo Keto reductase
XaFJ1_GM002797	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
XaFJ1_GM002801	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
XaFJ1_GM002803	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
XaFJ1_GM002820	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
XaFJ1_GM002821	COG0494	nUDIX hydrolase
XaFJ1_GM002823	COG0653	protein targeting
XaFJ1_GM002824	COG0739	heme binding
XaFJ1_GM002826	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
XaFJ1_GM002829	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
XaFJ1_GM002830	COG1181	Belongs to the D-alanine--D-alanine ligase family
XaFJ1_GM002832	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
XaFJ1_GM002835	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
XaFJ1_GM002838	COG3116	cell division
XaFJ1_GM002839	COG0275	rRNA processing
XaFJ1_GM002840	COG2001	Belongs to the MraZ family
XaFJ1_GM002844	COG0277	FAD linked oxidase domain protein
XaFJ1_GM002845	COG0745	RESPONSE REGULATOR receiver
XaFJ1_GM002846	COG2205	protein histidine kinase activity
XaFJ1_GM002848	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
XaFJ1_GM002849	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
XaFJ1_GM002852	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
XaFJ1_GM002853	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
XaFJ1_GM002854	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
XaFJ1_GM002857	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
XaFJ1_GM002857	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
XaFJ1_GM002860	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
XaFJ1_GM002862	COG0488	(ABC) transporter
XaFJ1_GM002863	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
XaFJ1_GM002864	COG1490	D-aminoacyl-tRNA deacylase activity
XaFJ1_GM002872	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
XaFJ1_GM002873	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
XaFJ1_GM002873	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
XaFJ1_GM002875	COG0242	peptide deformylase activity
XaFJ1_GM002876	COG1652	LysM domain
XaFJ1_GM002877	COG0758	DNA mediated transformation
XaFJ1_GM002878	COG2922	Belongs to the Smg family
XaFJ1_GM002880	COG1714	RDD family
XaFJ1_GM002881	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
XaFJ1_GM002881	COG1754	DNA topoisomerase type I activity
XaFJ1_GM002882	COG0009	L-threonylcarbamoyladenylate synthase
XaFJ1_GM002885	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_GM002887	COG0616	signal peptide processing
XaFJ1_GM002888	COG0534	Mate efflux family protein
XaFJ1_GM002890	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
XaFJ1_GM002892	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
XaFJ1_GM002893	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
XaFJ1_GM002894	COG2201	protein-glutamate methylesterase activity
XaFJ1_GM002895	COG2177	Part of the ABC transporter FtsEX involved in
XaFJ1_GM002896	COG2884	Cell division ATP-binding protein ftsE
XaFJ1_GM002898	COG3118	belongs to the thioredoxin family
XaFJ1_GM002899	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
XaFJ1_GM002908	COG1518	maintenance of DNA repeat elements
XaFJ1_GM002909	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
XaFJ1_GM002910	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
XaFJ1_GM002912	COG0577	efflux transmembrane transporter activity
XaFJ1_GM002912	COG1136	(ABC) transporter
XaFJ1_GM002914	COG1136	(ABC) transporter
XaFJ1_GM002914	COG0577	efflux transmembrane transporter activity
XaFJ1_GM002916	COG0577	efflux transmembrane transporter activity
XaFJ1_GM002918	COG4191	Histidine kinase
XaFJ1_GM002919	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
XaFJ1_GM002922	COG0355	proton-transporting ATP synthase activity, rotational mechanism
XaFJ1_GM002923	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
XaFJ1_GM002925	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
XaFJ1_GM002926	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
XaFJ1_GM002927	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
XaFJ1_GM002929	COG0356	it plays a direct role in the translocation of protons across the membrane
XaFJ1_GM002931	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
XaFJ1_GM002932	COG0508	dehydrogenase complex catalyzes the overall conversion of
XaFJ1_GM002939	COG0697	spore germination
XaFJ1_GM002940	COG1666	GTP binding
XaFJ1_GM002942	COG1187	pseudouridine synthase activity
XaFJ1_GM002948	COG2801	Transposase and inactivated derivatives
XaFJ1_GM002951	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
XaFJ1_GM002953	COG0793	Belongs to the peptidase S41A family
XaFJ1_GM002955	COG2963	transposase activity
XaFJ1_GM002969	COG0025	NhaP-type Na H and K H
XaFJ1_GM002972	COG3384	dioxygenase
XaFJ1_GM002973	COG0583	DNA-binding transcription factor activity
XaFJ1_GM002976	COG0667	Aldo Keto reductase
XaFJ1_GM002978	COG3706	GGDEF domain
XaFJ1_GM002981	COG4774	siderophore transport
XaFJ1_GM002985	COG0531	amino acid
XaFJ1_GM002986	COG5297	Belongs to the glycosyl hydrolase family 6
XaFJ1_GM002986	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
XaFJ1_GM002988	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
XaFJ1_GM002988	COG5297	Belongs to the glycosyl hydrolase family 6
XaFJ1_GM002990	COG5297	Belongs to the glycosyl hydrolase family 6
XaFJ1_GM002990	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
XaFJ1_GM002992	COG0612	Peptidase, M16
XaFJ1_GM002997	COG1113	amino acid transport
XaFJ1_GM002999	COG0697	spore germination
XaFJ1_GM003005	COG3511	phospholipase C
XaFJ1_GM003006	COG0628	permease
XaFJ1_GM003015	COG1199	ATP-dependent helicase activity
XaFJ1_GM003016	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
XaFJ1_GM003024	COG0625	glutathione transferase activity
XaFJ1_GM003028	COG4555	ABC transporter
XaFJ1_GM003030	COG0633	Ferredoxin
XaFJ1_GM003030	COG0543	2 iron, 2 sulfur cluster binding
XaFJ1_GM003031	COG1131	(ABC) transporter
XaFJ1_GM003032	COG0842	Transport permease protein
XaFJ1_GM003036	COG1643	Atp-dependent helicase
XaFJ1_GM003042	COG1187	pseudouridine synthase activity
XaFJ1_GM003045	COG2130	NADP-dependent
XaFJ1_GM003046	COG1414	Transcriptional regulator
XaFJ1_GM003049	COG1131	(ABC) transporter
XaFJ1_GM003050	COG4771	TonB-dependent receptor
XaFJ1_GM003051	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
XaFJ1_GM003052	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
XaFJ1_GM003054	COG3485	protocatechuate 3,4-dioxygenase
XaFJ1_GM003055	COG3485	protocatechuate 3,4-dioxygenase
XaFJ1_GM003057	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
XaFJ1_GM003070	COG1022	Amp-dependent synthetase and ligase
XaFJ1_GM003071	COG1024	Enoyl-CoA hydratase
XaFJ1_GM003072	COG0659	secondary active sulfate transmembrane transporter activity
XaFJ1_GM003073	COG2199	diguanylate cyclase activity
XaFJ1_GM003087	COG0339	signal peptide processing
XaFJ1_GM003091	COG0564	pseudouridine synthase activity
XaFJ1_GM003095	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
XaFJ1_GM003096	COG0318	PFAM AMP-dependent synthetase and ligase
XaFJ1_GM003097	COG0727	PFAM Uncharacterised protein family (UPF0153)
XaFJ1_GM003099	COG0596	Alpha beta hydrolase
XaFJ1_GM003101	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
XaFJ1_GM003107	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
XaFJ1_GM003117	COG2204	response regulator
XaFJ1_GM003118	COG3852	Histidine kinase
XaFJ1_GM003119	COG0004	ammonium transporteR
XaFJ1_GM003120	COG0347	Belongs to the P(II) protein family
XaFJ1_GM003121	COG0174	glutamine synthetase
XaFJ1_GM003127	COG2050	protein possibly involved in aromatic compounds catabolism
XaFJ1_GM003128	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
XaFJ1_GM003130	COG2062	phosphohistidine phosphatase, SixA
XaFJ1_GM003140	COG2271	Major facilitator Superfamily
XaFJ1_GM003144	COG1205	dead DEAH box helicase
XaFJ1_GM003144	COG1111	helicase
XaFJ1_GM003147	COG0067	glutamate synthase
XaFJ1_GM003147	COG0069	glutamate synthase activity
XaFJ1_GM003147	COG0070	glutamate synthase
XaFJ1_GM003148	COG0493	'glutamate synthase
XaFJ1_GM003149	COG1803	Methylglyoxal synthase
XaFJ1_GM003150	COG3135	benzoate transporter
XaFJ1_GM003155	COG2951	lytic endotransglycosylase activity
XaFJ1_GM003157	COG0730	response to heat
XaFJ1_GM003163	COG0302	gtp cyclohydrolase
XaFJ1_GM003164	COG0477	Major facilitator Superfamily
XaFJ1_GM003166	COG0840	transmembrane signaling receptor activity
XaFJ1_GM003170	COG3132	Protein of unknown function, DUF480
XaFJ1_GM003171	COG0729	surface antigen
XaFJ1_GM003172	COG2911	Protein conserved in bacteria
XaFJ1_GM003173	COG0473	3-isopropylmalate dehydrogenase activity
XaFJ1_GM003180	COG1752	Esterase of the alpha-beta hydrolase superfamily
XaFJ1_GM003181	COG1473	amidohydrolase
XaFJ1_GM003183	COG0861	Integral membrane protein TerC family
XaFJ1_GM003184	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
XaFJ1_GM003190	COG0531	amino acid
XaFJ1_GM003191	COG4566	intracellular signal transduction
XaFJ1_GM003192	COG4191	Histidine kinase
XaFJ1_GM003193	COG1285	pathogenesis
XaFJ1_GM003199	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
XaFJ1_GM003200	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
XaFJ1_GM003203	COG0210	DNA helicase
XaFJ1_GM003205	COG1122	ATPase activity
XaFJ1_GM003206	COG1733	regulation of RNA biosynthetic process
XaFJ1_GM003212	COG0594	ribonuclease P activity