locus-tag class description KP728_00010 PF00072 Response regulator receiver domain KP728_00020 PF01584 CheW-like domain KP728_00025 PF13614 AAA domain KP728_00030 PF13677 Membrane MotB of proton-channel complex MotA/MotB KP728_00030 PF00691 OmpA family KP728_00035 PF01618 MotA/TolQ/ExbB proton channel family KP728_00085 PF01584 CheW-like domain KP728_00085 PF02895 Signal transducing histidine kinase, homodimeric domain KP728_00085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_00085 PF01627 Hpt domain KP728_00085 PF00072 Response regulator receiver domain KP728_00090 PF04344 Chemotaxis phosphatase, CheZ KP728_00095 PF00072 Response regulator receiver domain KP728_00100 PF04545 Sigma-70, region 4 KP728_00100 PF04539 Sigma-70 region 3 KP728_00100 PF04542 Sigma-70 region 2 KP728_00105 PF10609 NUBPL iron-transfer P-loop NTPase KP728_00110 PF00448 SRP54-type protein, GTPase domain KP728_00115 PF00771 FHIPEP family KP728_00120 PF01312 FlhB HrpN YscU SpaS Family KP728_00125 PF00990 Diguanylate cyclase, GGDEF domain KP728_00125 PF03707 Bacterial signalling protein N terminal repeat KP728_00125 PF00563 EAL domain KP728_00130 PF00990 Diguanylate cyclase, GGDEF domain KP728_00135 PF03707 Bacterial signalling protein N terminal repeat KP728_00135 PF00990 Diguanylate cyclase, GGDEF domain KP728_00135 PF13188 PAS domain KP728_00135 PF00563 EAL domain KP728_00140 PF01311 Bacterial export proteins, family 1 KP728_00145 PF01313 Bacterial export proteins, family 3 KP728_00150 PF00813 FliP family KP728_00155 PF04347 Flagellar biosynthesis protein, FliO KP728_00160 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KP728_00165 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KP728_00165 PF02154 Flagellar motor switch protein FliM KP728_00185 PF18269 T3SS EscN ATPase C-terminal domain KP728_00185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KP728_00195 PF01706 FliG C-terminal domain KP728_00195 PF14842 FliG N-terminal domain KP728_00195 PF14841 FliG middle domain KP728_00200 PF08345 Flagellar M-ring protein C-terminal KP728_00200 PF01514 Secretory protein of YscJ/FliF family KP728_00205 PF02049 Flagellar hook-basal body complex protein FliE KP728_00210 PF00535 Glycosyl transferase family 2 KP728_00210 PF00534 Glycosyl transferases group 1 KP728_00245 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KP728_00245 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KP728_00255 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KP728_00260 PF02954 Bacterial regulatory protein, Fis family KP728_00260 PF00158 Sigma-54 interaction domain KP728_00260 PF06490 Flagellar regulatory protein FleQ KP728_00265 PF00072 Response regulator receiver domain KP728_00265 PF01339 CheB methylesterase KP728_00270 PF04963 Sigma-54 factor, core binding domain KP728_00270 PF04552 Sigma-54, DNA binding domain KP728_00270 PF00309 Sigma-54 factor, Activator interacting domain (AID) KP728_00275 PF00196 Bacterial regulatory proteins, luxR family KP728_00275 PF00072 Response regulator receiver domain KP728_00290 PF02561 Flagellar protein FliS KP728_00295 PF07196 Flagellin hook IN motif KP728_00295 PF07195 Flagellar hook-associated protein 2 C-terminus KP728_00295 PF02465 Flagellar hook-associated protein 2 N-terminus KP728_00300 PF00700 Bacterial flagellin C-terminal helical region KP728_00300 PF00669 Bacterial flagellin N-terminal helical region KP728_00310 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KP728_00310 PF07196 Flagellin hook IN motif KP728_00315 PF10135 Rod binding protein KP728_00315 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase KP728_00320 PF02119 Flagellar P-ring protein KP728_00325 PF02107 Flagellar L-ring protein KP728_00330 PF00460 Flagella basal body rod protein KP728_00330 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KP728_00335 PF00460 Flagella basal body rod protein KP728_00335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KP728_00340 PF07559 Flagellar basal body protein FlaE KP728_00340 PF00460 Flagella basal body rod protein KP728_00340 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KP728_00345 PF03963 Flagellar hook capping protein - N-terminal region KP728_00350 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KP728_00350 PF00460 Flagella basal body rod protein KP728_00355 PF00460 Flagella basal body rod protein KP728_00360 PF00072 Response regulator receiver domain KP728_00360 PF01584 CheW-like domain KP728_00365 PF01609 Transposase DDE domain KP728_00365 PF05598 Transposase domain (DUF772) KP728_00385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_00385 PF00512 His Kinase A (phospho-acceptor) domain KP728_00390 PF00563 EAL domain KP728_00390 PF00990 Diguanylate cyclase, GGDEF domain KP728_00390 PF03707 Bacterial signalling protein N terminal repeat KP728_00395 PF07730 Histidine kinase KP728_00395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_00400 PF00563 EAL domain KP728_00400 PF00990 Diguanylate cyclase, GGDEF domain KP728_00400 PF03707 Bacterial signalling protein N terminal repeat KP728_00410 PF12729 Four helix bundle sensory module for signal transduction KP728_00410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_00410 PF00672 HAMP domain KP728_00415 PF04356 Protein of unknown function (DUF489) KP728_00425 PF00293 NUDIX domain KP728_00430 PF02617 ATP-dependent Clp protease adaptor protein ClpS KP728_00435 PF10431 C-terminal, D2-small domain, of ClpB protein KP728_00435 PF00004 ATPase family associated with various cellular activities (AAA) KP728_00435 PF17871 AAA lid domain KP728_00435 PF02861 Clp amino terminal domain, pathogenicity island component KP728_00435 PF07724 AAA domain (Cdc48 subfamily) KP728_00440 PF01176 Translation initiation factor 1A / IF-1 KP728_00445 PF03588 Leucyl/phenylalanyl-tRNA protein transferase KP728_00455 PF07992 Pyridine nucleotide-disulphide oxidoreductase KP728_00460 PF17854 FtsK alpha domain KP728_00460 PF09397 Ftsk gamma domain KP728_00460 PF01580 FtsK/SpoIIIE family KP728_00460 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KP728_00470 PF03548 Outer membrane lipoprotein carrier protein LolA KP728_00480 PF00004 ATPase family associated with various cellular activities (AAA) KP728_00480 PF16193 AAA C-terminal domain KP728_00480 PF12002 MgsA AAA+ ATPase C terminal KP728_00485 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KP728_00490 PF02803 Thiolase, C-terminal domain KP728_00490 PF00108 Thiolase, N-terminal domain KP728_00495 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KP728_00495 PF00378 Enoyl-CoA hydratase/isomerase KP728_00495 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KP728_00505 PF00334 Nucleoside diphosphate kinase KP728_00510 PF04055 Radical SAM superfamily KP728_00520 PF13464 Domain of unknown function (DUF4115) KP728_00530 PF01011 PQQ enzyme repeat KP728_00530 PF13360 PQQ-like domain KP728_00535 PF01926 50S ribosome-binding GTPase KP728_00535 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KP728_00540 PF03453 MoeA N-terminal region (domain I and II) KP728_00540 PF03454 MoeA C-terminal region (domain IV) KP728_00540 PF00994 Probable molybdopterin binding domain KP728_00545 PF00899 ThiF family KP728_00565 PF03372 Endonuclease/Exonuclease/phosphatase family KP728_00575 PF00994 Probable molybdopterin binding domain KP728_00575 PF03454 MoeA C-terminal region (domain IV) KP728_00575 PF03453 MoeA N-terminal region (domain I and II) KP728_00580 PF12804 MobA-like NTP transferase domain KP728_00590 PF10414 Sirohaem synthase dimerisation region KP728_00590 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KP728_00590 PF14824 Sirohaem biosynthesis protein central KP728_00595 PF00072 Response regulator receiver domain KP728_00595 PF03861 ANTAR domain KP728_00605 PF07690 Major Facilitator Superfamily KP728_00610 PF18267 Rubredoxin NAD+ reductase C-terminal domain KP728_00610 PF04324 BFD-like [2Fe-2S] binding domain KP728_00610 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KP728_00610 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KP728_00610 PF07992 Pyridine nucleotide-disulphide oxidoreductase KP728_00615 PF00355 Rieske [2Fe-2S] domain KP728_00615 PF11723 Homotrimeric ring hydroxylase KP728_00620 PF04324 BFD-like [2Fe-2S] binding domain KP728_00620 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KP728_00620 PF00384 Molybdopterin oxidoreductase KP728_00620 PF01568 Molydopterin dinucleotide binding domain KP728_00625 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KP728_00640 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase KP728_00650 PF00483 Nucleotidyl transferase KP728_00660 PF04324 BFD-like [2Fe-2S] binding domain KP728_00660 PF01266 FAD dependent oxidoreductase KP728_00680 PF00563 EAL domain KP728_00680 PF00990 Diguanylate cyclase, GGDEF domain KP728_00680 PF08447 PAS fold KP728_00680 PF08448 PAS fold KP728_00685 PF12951 Passenger-associated-transport-repeat KP728_00685 PF12951 Passenger-associated-transport-repeat KP728_00685 PF12951 Passenger-associated-transport-repeat KP728_00690 PF13006 Insertion element 4 transposase N-terminal KP728_00690 PF01609 Transposase DDE domain KP728_00690 PF13006 Insertion element 4 transposase N-terminal KP728_00690 PF01609 Transposase DDE domain KP728_00695 PF03797 Autotransporter beta-domain KP728_00695 PF00082 Subtilase family KP728_00720 PF07995 Glucose / Sorbosone dehydrogenase KP728_00735 PF00072 Response regulator receiver domain KP728_00735 PF13426 PAS domain KP728_00735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_00740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_00740 PF00512 His Kinase A (phospho-acceptor) domain KP728_00780 PF01494 FAD binding domain KP728_00785 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KP728_00795 PF02203 Tar ligand binding domain homologue KP728_00795 PF00672 HAMP domain KP728_00795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_00815 PF03466 LysR substrate binding domain KP728_00815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_00825 PF01062 Bestrophin, RFP-TM, chloride channel KP728_00835 PF00196 Bacterial regulatory proteins, luxR family KP728_00835 PF00072 Response regulator receiver domain KP728_00850 PF00106 short chain dehydrogenase KP728_00970 PF01494 FAD binding domain KP728_00975 PF00857 Isochorismatase family KP728_00990 PF13533 Biotin-lipoyl like KP728_01000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_01000 PF03466 LysR substrate binding domain KP728_01005 PF03466 LysR substrate binding domain KP728_01005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_01010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KP728_01050 PF01106 NifU-like domain KP728_01055 PF01329 Pterin 4 alpha carbinolamine dehydratase KP728_01065 PF02535 ZIP Zinc transporter KP728_01070 PF00849 RNA pseudouridylate synthase KP728_01070 PF01479 S4 domain KP728_01075 PF12111 Polyribonucleotide phosphorylase C terminal KP728_01075 PF00575 S1 RNA binding domain KP728_01075 PF10150 Ribonuclease E/G family KP728_01080 PF00072 Response regulator receiver domain KP728_01080 PF00196 Bacterial regulatory proteins, luxR family KP728_01085 PF17773 UPF0176 acylphosphatase like domain KP728_01085 PF00581 Rhodanese-like domain KP728_01095 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KP728_01105 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KP728_01105 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KP728_01105 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KP728_01150 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KP728_01185 PF00436 Single-strand binding protein family KP728_01190 PF01131 DNA topoisomerase KP728_01190 PF01751 Toprim domain KP728_01195 PF00145 C-5 cytosine-specific DNA methylase KP728_01410 PF04002 RadC-like JAB domain KP728_01455 PF00106 short chain dehydrogenase KP728_01460 PF13193 AMP-binding enzyme C-terminal domain KP728_01460 PF00668 Condensation domain KP728_01460 PF00550 Phosphopantetheine attachment site KP728_01460 PF00501 AMP-binding enzyme KP728_01470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_01470 PF03466 LysR substrate binding domain KP728_01530 PF04610 TrbL/VirB6 plasmid conjugal transfer protein KP728_01555 PF13361 UvrD-like helicase C-terminal domain KP728_01555 PF12705 PD-(D/E)XK nuclease superfamily KP728_01555 PF00580 UvrD/REP helicase N-terminal domain KP728_01570 PF05598 Transposase domain (DUF772) KP728_01570 PF01609 Transposase DDE domain KP728_01575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_01575 PF03466 LysR substrate binding domain KP728_01580 PF01381 Helix-turn-helix KP728_01600 PF01526 Tn3 transposase DDE domain KP728_01600 PF13700 Domain of unknown function (DUF4158) KP728_01625 PF00665 Integrase core domain KP728_01635 PF13356 Arm DNA-binding domain KP728_01635 PF00589 Phage integrase family KP728_01645 PF01066 CDP-alcohol phosphatidyltransferase KP728_01650 PF01541 GIY-YIG catalytic domain KP728_01650 PF02151 UvrB/uvrC motif KP728_01650 PF08459 UvrC Helix-hairpin-helix N-terminal KP728_01660 PF01451 Low molecular weight phosphotyrosine protein phosphatase KP728_01665 PF02348 Cytidylyltransferase KP728_01670 PF02606 Tetraacyldisaccharide-1-P 4'-kinase KP728_01675 PF00664 ABC transporter transmembrane region KP728_01675 PF00005 ABC transporter KP728_01680 PF02472 Biopolymer transport protein ExbD/TolR KP728_01685 PF01618 MotA/TolQ/ExbB proton channel family KP728_01690 PF03772 Competence protein KP728_01690 PF00753 Metallo-beta-lactamase superfamily KP728_01700 PF00005 ABC transporter KP728_01705 PF12704 MacB-like periplasmic core domain KP728_01705 PF02687 FtsX-like permease family KP728_01715 PF03937 Flavinator of succinate dehydrogenase KP728_01720 PF13085 2Fe-2S iron-sulfur cluster binding domain KP728_01730 PF00890 FAD binding domain KP728_01730 PF02910 Fumarate reductase flavoprotein C-term KP728_01735 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KP728_01740 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KP728_01755 PF00005 ABC transporter KP728_01755 PF17912 MalK OB fold domain KP728_01760 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain KP728_01760 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain KP728_01765 PF02685 Glucokinase KP728_01770 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase KP728_01775 PF00920 Dehydratase family KP728_01780 PF01081 KDPG and KHG aldolase KP728_01785 PF00873 AcrB/AcrD/AcrF family KP728_01790 PF00873 AcrB/AcrD/AcrF family KP728_01795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KP728_01805 PF00034 Cytochrome c KP728_01870 PF13356 Arm DNA-binding domain KP728_01870 PF00589 Phage integrase family KP728_01885 PF00672 HAMP domain KP728_01885 PF01627 Hpt domain KP728_01885 PF00072 Response regulator receiver domain KP728_01885 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KP728_01885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_01885 PF00512 His Kinase A (phospho-acceptor) domain KP728_01890 PF17674 HHH domain KP728_01890 PF00575 S1 RNA binding domain KP728_01890 PF09371 Tex-like protein N-terminal domain KP728_01890 PF16921 Tex protein YqgF-like domain KP728_01900 PF01266 FAD dependent oxidoreductase KP728_01900 PF00355 Rieske [2Fe-2S] domain KP728_01915 PF00561 alpha/beta hydrolase fold KP728_01925 PF01066 CDP-alcohol phosphatidyltransferase KP728_01945 PF03618 Kinase/pyrophosphorylase KP728_01950 PF02896 PEP-utilising enzyme, TIM barrel domain KP728_01950 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KP728_01950 PF00391 PEP-utilising enzyme, mobile domain KP728_01955 PF00924 Mechanosensitive ion channel KP728_01955 PF05552 Conserved TM helix KP728_01960 PF00929 Exonuclease KP728_01965 PF14437 MafB19-like deaminase KP728_01970 PF02742 Iron dependent repressor, metal binding and dimerisation domain KP728_01970 PF01325 Iron dependent repressor, N-terminal DNA binding domain KP728_01975 PF01566 Natural resistance-associated macrophage protein KP728_01980 PF00561 alpha/beta hydrolase fold KP728_02015 PF13195 Protein of unknown function (DUF4011) KP728_02015 PF13087 AAA domain KP728_02015 PF13087 AAA domain KP728_02015 PF13086 AAA domain KP728_02015 PF13086 AAA domain KP728_02015 PF13195 Protein of unknown function (DUF4011) KP728_02075 PF00117 Glutamine amidotransferase class-I KP728_02075 PF00958 GMP synthase C terminal domain KP728_02075 PF02540 NAD synthase KP728_02080 PF00571 CBS domain KP728_02080 PF00478 IMP dehydrogenase / GMP reductase domain KP728_02085 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KP728_02085 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KP728_02100 PF00483 Nucleotidyl transferase KP728_02105 PF02719 Polysaccharide biosynthesis protein KP728_02110 PF00953 Glycosyl transferase family 4 KP728_02115 PF18073 Rubredoxin metal binding domain KP728_02125 PF00216 Bacterial DNA-binding protein KP728_02130 PF00575 S1 RNA binding domain KP728_02135 PF02224 Cytidylate kinase KP728_02140 PF00444 Ribosomal protein L36 KP728_02150 PF04371 Porphyromonas-type peptidyl-arginine deiminase KP728_02155 PF00795 Carbon-nitrogen hydrolase KP728_02180 PF00528 Binding-protein-dependent transport system inner membrane component KP728_02185 PF00528 Binding-protein-dependent transport system inner membrane component KP728_02190 PF01547 Bacterial extracellular solute-binding protein KP728_02205 PF00356 Bacterial regulatory proteins, lacI family KP728_02215 PF03795 YCII-related domain KP728_02220 PF02616 Segregation and condensation protein ScpA KP728_02225 PF04079 Segregation and condensation complex subunit ScpB KP728_02230 PF01479 S4 domain KP728_02230 PF00849 RNA pseudouridylate synthase KP728_02245 PF00795 Carbon-nitrogen hydrolase KP728_02250 PF00155 Aminotransferase class I and II KP728_02255 PF00005 ABC transporter KP728_02260 PF03379 CcmB protein KP728_02265 PF01578 Cytochrome C assembly protein KP728_02275 PF03100 CcmE KP728_02280 PF01578 Cytochrome C assembly protein KP728_02280 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal KP728_02285 PF08534 Redoxin KP728_02290 PF03918 Cytochrome C biogenesis protein KP728_02300 PF00561 alpha/beta hydrolase fold KP728_02310 PF00664 ABC transporter transmembrane region KP728_02310 PF00005 ABC transporter KP728_02315 PF00664 ABC transporter transmembrane region KP728_02315 PF00005 ABC transporter KP728_02320 PF01654 Cytochrome bd terminal oxidase subunit I KP728_02325 PF02322 Cytochrome bd terminal oxidase subunit II KP728_02345 PF02129 X-Pro dipeptidyl-peptidase (S15 family) KP728_02345 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain KP728_02350 PF00171 Aldehyde dehydrogenase family KP728_02355 PF01472 PUA domain KP728_02355 PF00696 Amino acid kinase family KP728_02370 PF00206 Lyase KP728_02375 PF01118 Semialdehyde dehydrogenase, NAD binding domain KP728_02385 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase KP728_02385 PF00696 Amino acid kinase family KP728_02390 PF01546 Peptidase family M20/M25/M40 KP728_02390 PF07687 Peptidase dimerisation domain KP728_02395 PF00764 Arginosuccinate synthase KP728_02400 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KP728_02400 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KP728_02410 PF09190 DALR domain KP728_02410 PF01406 tRNA synthetases class I (C) catalytic domain KP728_02415 PF02657 Fe-S metabolism associated domain KP728_02425 PF13006 Insertion element 4 transposase N-terminal KP728_02425 PF01609 Transposase DDE domain KP728_02425 PF01609 Transposase DDE domain KP728_02425 PF13006 Insertion element 4 transposase N-terminal KP728_02430 PF01258 Prokaryotic dksA/traR C4-type zinc finger KP728_02435 PF01809 Putative membrane protein insertion efficiency factor KP728_02440 PF01979 Amidohydrolase family KP728_02445 PF08460 Bacterial SH3 domain KP728_02445 PF01551 Peptidase family M23 KP728_02455 PF06751 Ethanolamine ammonia lyase large subunit (EutB) KP728_02460 PF05985 Ethanolamine ammonia-lyase light chain (EutC) KP728_02490 PF00295 Glycosyl hydrolases family 28 KP728_02505 PF13419 Haloacid dehalogenase-like hydrolase KP728_02515 PF01979 Amidohydrolase family KP728_02525 PF01132 Elongation factor P (EF-P) OB domain KP728_02525 PF08207 Elongation factor P (EF-P) KOW-like domain KP728_02525 PF09285 Elongation factor P, C-terminal KP728_02530 PF04055 Radical SAM superfamily KP728_02535 PF13188 PAS domain KP728_02535 PF03707 Bacterial signalling protein N terminal repeat KP728_02535 PF00990 Diguanylate cyclase, GGDEF domain KP728_02535 PF00563 EAL domain KP728_02545 PF00588 SpoU rRNA Methylase family KP728_02550 PF00459 Inositol monophosphatase family KP728_02555 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KP728_02555 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KP728_02560 PF00545 ribonuclease KP728_02570 PF00005 ABC transporter KP728_02570 PF12848 ABC transporter KP728_02570 PF16326 ABC transporter C-terminal domain KP728_02575 PF00271 Helicase conserved C-terminal domain KP728_02575 PF00270 DEAD/DEAH box helicase KP728_02575 PF03880 DbpA RNA binding domain KP728_02580 PF00156 Phosphoribosyl transferase domain KP728_02585 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KP728_02590 PF07859 alpha/beta hydrolase fold KP728_02595 PF14497 Glutathione S-transferase, C-terminal domain KP728_02595 PF02798 Glutathione S-transferase, N-terminal domain KP728_02600 PF00313 'Cold-shock' DNA-binding domain KP728_02605 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KP728_02610 PF07152 YaeQ protein KP728_02620 PF00990 Diguanylate cyclase, GGDEF domain KP728_02620 PF00563 EAL domain KP728_02620 PF00072 Response regulator receiver domain KP728_02625 PF01435 Peptidase family M48 KP728_02630 PF00749 tRNA synthetases class I (E and Q), catalytic domain KP728_02635 PF00106 short chain dehydrogenase KP728_02640 PF05233 PHB accumulation regulatory domain KP728_02640 PF07879 PHB/PHA accumulation regulator DNA-binding domain KP728_02655 PF01119 DNA mismatch repair protein, C-terminal domain KP728_02655 PF08676 MutL C terminal dimerisation domain KP728_02660 PF01520 N-acetylmuramoyl-L-alanine amidase KP728_02660 PF11741 AMIN domain KP728_02670 PF01256 Carbohydrate kinase KP728_02670 PF03853 YjeF-related protein N-terminus KP728_02675 PF08331 Domain of unknown function (DUF1730) KP728_02680 PF13742 OB-fold nucleic acid binding domain KP728_02680 PF02601 Exonuclease VII, large subunit KP728_02690 PF03781 Sulfatase-modifying factor enzyme 1 KP728_02695 PF01612 3'-5' exonuclease KP728_02695 PF00570 HRDC domain KP728_02720 PF01584 CheW-like domain KP728_02725 PF02743 Cache domain KP728_02725 PF00672 HAMP domain KP728_02725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_02730 PF02245 Methylpurine-DNA glycosylase (MPG) KP728_02735 PF00270 DEAD/DEAH box helicase KP728_02735 PF00271 Helicase conserved C-terminal domain KP728_02735 PF08494 DEAD/H associated KP728_02745 PF04386 Stringent starvation protein B KP728_02750 PF00043 Glutathione S-transferase, C-terminal domain KP728_02750 PF02798 Glutathione S-transferase, N-terminal domain KP728_02755 PF02167 Cytochrome C1 family KP728_02760 PF00032 Cytochrome b(C-terminal)/b6/petD KP728_02760 PF00033 Cytochrome b/b6/petB KP728_02765 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal KP728_02765 PF00355 Rieske [2Fe-2S] domain KP728_02770 PF01464 Transglycosylase SLT domain KP728_02780 PF13417 Glutathione S-transferase, N-terminal domain KP728_02785 PF04055 Radical SAM superfamily KP728_02785 PF01938 TRAM domain KP728_02785 PF00919 Uncharacterized protein family UPF0004 KP728_02790 PF02562 PhoH-like protein KP728_02800 PF02130 Uncharacterized protein family UPF0054 KP728_02810 PF00571 CBS domain KP728_02810 PF03471 Transporter associated domain KP728_02825 PF00171 Aldehyde dehydrogenase family KP728_02835 PF00528 Binding-protein-dependent transport system inner membrane component KP728_02840 PF00528 Binding-protein-dependent transport system inner membrane component KP728_02845 PF00005 ABC transporter KP728_02845 PF08402 TOBE domain KP728_02850 PF02321 Outer membrane efflux protein KP728_02855 PF07690 Major Facilitator Superfamily KP728_02860 PF13533 Biotin-lipoyl like KP728_02865 PF13416 Bacterial extracellular solute-binding protein KP728_02870 PF00202 Aminotransferase class-III KP728_02875 PF00120 Glutamine synthetase, catalytic domain KP728_02880 PF07722 Peptidase C26 KP728_02885 PF00120 Glutamine synthetase, catalytic domain KP728_02890 PF01266 FAD dependent oxidoreductase KP728_02895 PF00072 Response regulator receiver domain KP728_02895 PF00990 Diguanylate cyclase, GGDEF domain KP728_02900 PF01814 Hemerythrin HHE cation binding domain KP728_02905 PF07690 Major Facilitator Superfamily KP728_02905 PF00083 Sugar (and other) transporter KP728_02915 PF00384 Molybdopterin oxidoreductase KP728_02920 PF02634 FdhD/NarQ family KP728_02925 PF07690 Major Facilitator Superfamily KP728_02930 PF00202 Aminotransferase class-III KP728_02940 PF04286 Protein of unknown function (DUF445) KP728_02945 PF00672 HAMP domain KP728_02945 PF01627 Hpt domain KP728_02945 PF00512 His Kinase A (phospho-acceptor) domain KP728_02945 PF00072 Response regulator receiver domain KP728_02945 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KP728_02945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_02950 PF00072 Response regulator receiver domain KP728_02955 PF07690 Major Facilitator Superfamily KP728_02970 PF00106 short chain dehydrogenase KP728_02975 PF00440 Bacterial regulatory proteins, tetR family KP728_02980 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KP728_02985 PF00106 short chain dehydrogenase KP728_02990 PF08240 Alcohol dehydrogenase GroES-like domain KP728_02990 PF00107 Zinc-binding dehydrogenase KP728_02995 PF05088 Bacterial NAD-glutamate dehydrogenase KP728_03005 PF00529 HlyD membrane-fusion protein of T1SS KP728_03005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KP728_03010 PF00873 AcrB/AcrD/AcrF family KP728_03015 PF13006 Insertion element 4 transposase N-terminal KP728_03015 PF01609 Transposase DDE domain KP728_03015 PF13006 Insertion element 4 transposase N-terminal KP728_03015 PF01609 Transposase DDE domain KP728_03020 PF00356 Bacterial regulatory proteins, lacI family KP728_03025 PF05524 PEP-utilising enzyme, N-terminal KP728_03025 PF00391 PEP-utilising enzyme, mobile domain KP728_03025 PF02896 PEP-utilising enzyme, TIM barrel domain KP728_03025 PF00381 PTS HPr component phosphorylation site KP728_03025 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KP728_03030 PF00294 pfkB family carbohydrate kinase KP728_03035 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KP728_03045 PF07549 SecD/SecF GG Motif KP728_03045 PF02355 Protein export membrane protein KP728_03050 PF07549 SecD/SecF GG Motif KP728_03050 PF13721 SecD export protein N-terminal TM region KP728_03050 PF02355 Protein export membrane protein KP728_03055 PF02699 Preprotein translocase subunit KP728_03060 PF01702 Queuine tRNA-ribosyltransferase KP728_03065 PF02547 Queuosine biosynthesis protein KP728_03105 PF02927 Cellulase N-terminal ig-like domain KP728_03105 PF00759 Glycosyl hydrolase family 9 KP728_03115 PF00037 4Fe-4S binding domain KP728_03130 PF01467 Cytidylyltransferase-like KP728_03140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_03140 PF00183 Hsp90 protein KP728_03165 PF00593 TonB dependent receptor KP728_03165 PF07715 TonB-dependent Receptor Plug Domain KP728_03195 PF07532 Bacterial Ig-like domain (group 4) KP728_03200 PF07532 Bacterial Ig-like domain (group 4) KP728_03205 PF07715 TonB-dependent Receptor Plug Domain KP728_03205 PF00593 TonB dependent receptor KP728_03240 PF13520 Amino acid permease KP728_03255 PF01321 Creatinase/Prolidase N-terminal domain KP728_03255 PF00557 Metallopeptidase family M24 KP728_03260 PF00171 Aldehyde dehydrogenase family KP728_03265 PF00701 Dihydrodipicolinate synthetase family KP728_03270 PF07992 Pyridine nucleotide-disulphide oxidoreductase KP728_03270 PF04324 BFD-like [2Fe-2S] binding domain KP728_03280 PF01266 FAD dependent oxidoreductase KP728_03285 PF05544 Proline racemase KP728_03295 PF00448 SRP54-type protein, GTPase domain KP728_03295 PF02881 SRP54-type protein, helical bundle domain KP728_03300 PF14815 NUDIX domain KP728_03300 PF00633 Helix-hairpin-helix motif KP728_03300 PF00730 HhH-GPD superfamily base excision DNA repair protein KP728_03305 PF04362 Bacterial Fe(2+) trafficking KP728_03310 PF00072 Response regulator receiver domain KP728_03310 PF13426 PAS domain KP728_03310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_03315 PF00893 Small Multidrug Resistance protein KP728_03340 PF08212 Lipocalin-like domain KP728_03350 PF12806 Acetyl-CoA dehydrogenase C-terminal like KP728_03350 PF02770 Acyl-CoA dehydrogenase, middle domain KP728_03350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KP728_03350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KP728_03360 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KP728_03360 PF02779 Transketolase, pyrimidine binding domain KP728_03360 PF02780 Transketolase, C-terminal domain KP728_03380 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family KP728_03385 PF00753 Metallo-beta-lactamase superfamily KP728_03385 PF16123 Hydroxyacylglutathione hydrolase C-terminus KP728_03390 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KP728_03390 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KP728_03405 PF03808 Glycosyl transferase WecB/TagA/CpsF family KP728_03420 PF14667 Polysaccharide biosynthesis C-terminal domain KP728_03430 PF13439 Glycosyltransferase Family 4 KP728_03430 PF00534 Glycosyl transferases group 1 KP728_03450 PF02397 Bacterial sugar transferase KP728_03470 PF13411 MerR HTH family regulatory protein KP728_03475 PF00216 Bacterial DNA-binding protein KP728_03480 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KP728_03480 PF03484 tRNA synthetase B5 domain KP728_03480 PF03483 B3/4 domain KP728_03480 PF01588 Putative tRNA binding domain KP728_03480 PF03147 Ferredoxin-fold anticodon binding domain KP728_03485 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KP728_03485 PF01409 tRNA synthetases class II core domain (F) KP728_03490 PF00453 Ribosomal protein L20 KP728_03495 PF01632 Ribosomal protein L35 KP728_03500 PF00707 Translation initiation factor IF-3, C-terminal domain KP728_03500 PF05198 Translation initiation factor IF-3, N-terminal domain KP728_03505 PF02824 TGS domain KP728_03505 PF03129 Anticodon binding domain KP728_03505 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KP728_03505 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KP728_03510 PF00356 Bacterial regulatory proteins, lacI family KP728_03515 PF00686 Starch binding domain KP728_03515 PF00128 Alpha amylase, catalytic domain KP728_03520 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KP728_03530 PF10566 Glycoside hydrolase 97 KP728_03530 PF14508 Glycosyl-hydrolase 97 N-terminal KP728_03530 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation KP728_03540 PF00128 Alpha amylase, catalytic domain KP728_03590 PF03135 CagE, TrbE, VirB family, component of type IV transporter system KP728_03595 PF05101 Type IV secretory pathway, VirB3-like protein KP728_03605 PF01464 Transglycosylase SLT domain KP728_03610 PF00437 Type II/IV secretion system protein KP728_03615 PF03743 Bacterial conjugation TrbI-like protein KP728_03635 PF02534 Type IV secretory system Conjugative DNA transfer KP728_03650 PF04851 Type III restriction enzyme, res subunit KP728_03650 PF00271 Helicase conserved C-terminal domain KP728_03650 PF12344 Ultra-violet resistance protein B KP728_03650 PF17757 UvrB interaction domain KP728_03650 PF02151 UvrB/uvrC motif KP728_03670 PF01555 DNA methylase KP728_03750 PF02203 Tar ligand binding domain homologue KP728_03750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_03750 PF00672 HAMP domain KP728_03925 PF05567 Neisseria PilC beta-propeller domain KP728_03950 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases KP728_03950 PF11892 Domain of unknown function (DUF3412) KP728_03950 PF03641 Possible lysine decarboxylase KP728_03955 PF00593 TonB dependent receptor KP728_03960 PF01914 MarC family integral membrane protein KP728_03970 PF00462 Glutaredoxin KP728_03975 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KP728_03975 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KP728_03980 PF02222 ATP-grasp domain KP728_03980 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KP728_03985 PF00731 AIR carboxylase KP728_03995 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KP728_03995 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KP728_04005 PF00575 S1 RNA binding domain KP728_04005 PF03725 3' exoribonuclease family, domain 2 KP728_04005 PF01138 3' exoribonuclease family, domain 1 KP728_04005 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KP728_04005 PF00013 KH domain KP728_04010 PF00312 Ribosomal protein S15 KP728_04015 PF09157 Pseudouridine synthase II TruB, C-terminal KP728_04015 PF01509 TruB family pseudouridylate synthase (N terminal domain) KP728_04015 PF16198 tRNA pseudouridylate synthase B C-terminal domain KP728_04020 PF02033 Ribosome-binding factor A KP728_04025 PF04760 Translation initiation factor IF-2, N-terminal region KP728_04025 PF11987 Translation-initiation factor 2 KP728_04025 PF00009 Elongation factor Tu GTP binding domain KP728_04025 PF08364 Bacterial translation initiation factor IF-2 associated region KP728_04030 PF00575 S1 RNA binding domain KP728_04030 PF08529 NusA N-terminal domain KP728_04030 PF13184 NusA-like KH domain KP728_04035 PF17384 RimP C-terminal SH3 domain KP728_04035 PF02576 RimP N-terminal domain KP728_04045 PF00361 Proton-conducting membrane transporter KP728_04050 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus KP728_04050 PF00361 Proton-conducting membrane transporter KP728_04055 PF00361 Proton-conducting membrane transporter KP728_04055 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KP728_04060 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KP728_04065 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 KP728_04070 PF12838 4Fe-4S dicluster domain KP728_04075 PF00146 NADH dehydrogenase KP728_04080 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal KP728_04080 PF00384 Molybdopterin oxidoreductase KP728_04080 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KP728_04085 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KP728_04085 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KP728_04085 PF10531 SLBB domain KP728_04095 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit KP728_04100 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit KP728_04105 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit KP728_04110 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KP728_04125 PF00121 Triosephosphate isomerase KP728_04130 PF00106 short chain dehydrogenase KP728_04145 PF00990 Diguanylate cyclase, GGDEF domain KP728_04145 PF00563 EAL domain KP728_04145 PF03707 Bacterial signalling protein N terminal repeat KP728_04160 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KP728_04160 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KP728_04160 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KP728_04160 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KP728_04165 PF17848 Acetyl-coA carboxylase zinc finger domain KP728_04165 PF01039 Carboxyl transferase domain KP728_04170 PF00290 Tryptophan synthase alpha chain KP728_04180 PF00291 Pyridoxal-phosphate dependent enzyme KP728_04185 PF03466 LysR substrate binding domain KP728_04185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_04190 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KP728_04195 PF01416 tRNA pseudouridine synthase KP728_04240 PF02774 Semialdehyde dehydrogenase, dimerisation domain KP728_04240 PF01118 Semialdehyde dehydrogenase, NAD binding domain KP728_04245 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KP728_04245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KP728_04250 PF01264 Chorismate synthase KP728_04260 PF05175 Methyltransferase small domain KP728_04265 PF02630 SCO1/SenC KP728_04270 PF02666 Phosphatidylserine decarboxylase KP728_04280 PF05872 Bacterial protein of unknown function (DUF853) KP728_04285 PF00293 NUDIX domain KP728_04300 PF03449 Transcription elongation factor, N-terminal KP728_04300 PF01272 Transcription elongation factor, GreA/GreB, C-term KP728_04305 PF04055 Radical SAM superfamily KP728_04305 PF18693 TRAM domain KP728_04305 PF00919 Uncharacterized protein family UPF0004 KP728_04325 PF13276 HTH-like domain KP728_04325 PF00665 Integrase core domain KP728_04325 PF13333 Integrase core domain KP728_04330 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) KP728_04335 PF02086 D12 class N6 adenine-specific DNA methyltransferase KP728_04355 PF00990 Diguanylate cyclase, GGDEF domain KP728_04375 PF02321 Outer membrane efflux protein KP728_04380 PF00106 short chain dehydrogenase KP728_04385 PF00873 AcrB/AcrD/AcrF family KP728_04390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KP728_04390 PF00529 HlyD membrane-fusion protein of T1SS KP728_04405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_04405 PF03466 LysR substrate binding domain KP728_04410 PF05736 OprF membrane domain KP728_04410 PF00691 OmpA family KP728_04415 PF03441 FAD binding domain of DNA photolyase KP728_04415 PF00875 DNA photolyase KP728_04420 PF03796 DnaB-like helicase C terminal domain KP728_04420 PF00772 DnaB-like helicase N terminal domain KP728_04425 PF03358 NADPH-dependent FMN reductase KP728_04430 PF00733 Asparagine synthase KP728_04430 PF13537 Glutamine amidotransferase domain KP728_04435 PF13417 Glutathione S-transferase, N-terminal domain KP728_04445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KP728_04445 PF02770 Acyl-CoA dehydrogenase, middle domain KP728_04445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KP728_04460 PF01026 TatD related DNase KP728_04465 PF00899 ThiF family KP728_04480 PF00313 'Cold-shock' DNA-binding domain KP728_04485 PF04306 Protein of unknown function (DUF456) KP728_04490 PF02253 Phospholipase A1 KP728_04495 PF00484 Carbonic anhydrase KP728_04510 PF05681 Fumarate hydratase (Fumerase) KP728_04510 PF05683 Fumarase C-terminus KP728_04515 PF00005 ABC transporter KP728_04520 PF00970 Oxidoreductase FAD-binding domain KP728_04520 PF00175 Oxidoreductase NAD-binding domain KP728_04525 PF00255 Glutathione peroxidase KP728_04530 PF01432 Peptidase family M3 KP728_04535 PF12802 MarR family KP728_04560 PF00854 POT family KP728_04570 PF01915 Glycosyl hydrolase family 3 C-terminal domain KP728_04570 PF00933 Glycosyl hydrolase family 3 N terminal domain KP728_04570 PF14310 Fibronectin type III-like domain KP728_04590 PF07690 Major Facilitator Superfamily KP728_04595 PF00529 HlyD membrane-fusion protein of T1SS KP728_04595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KP728_04600 PF02321 Outer membrane efflux protein KP728_04615 PF03989 DNA gyrase C-terminal domain, beta-propeller KP728_04615 PF00521 DNA gyrase/topoisomerase IV, subunit A KP728_04620 PF05724 Thiopurine S-methyltransferase (TPMT) KP728_04625 PF00210 Ferritin-like domain KP728_04630 PF01804 Penicillin amidase KP728_04635 PF07715 TonB-dependent Receptor Plug Domain KP728_04635 PF00593 TonB dependent receptor KP728_04645 PF00733 Asparagine synthase KP728_04645 PF13537 Glutamine amidotransferase domain KP728_04655 PF07687 Peptidase dimerisation domain KP728_04655 PF01546 Peptidase family M20/M25/M40 KP728_04660 PF03960 ArsC family KP728_04670 PF00132 Bacterial transferase hexapeptide (six repeats) KP728_04670 PF14602 Hexapeptide repeat of succinyl-transferase KP728_04670 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal KP728_04675 PF08335 GlnD PII-uridylyltransferase KP728_04675 PF01966 HD domain KP728_04675 PF01909 Nucleotidyltransferase domain KP728_04680 PF00557 Metallopeptidase family M24 KP728_04685 PF05229 Spore Coat Protein U domain KP728_04715 PF00318 Ribosomal protein S2 KP728_04720 PF00889 Elongation factor TS KP728_04725 PF00990 Diguanylate cyclase, GGDEF domain KP728_04725 PF00072 Response regulator receiver domain KP728_04730 PF00696 Amino acid kinase family KP728_04735 PF01765 Ribosome recycling factor KP728_04740 PF01255 Putative undecaprenyl diphosphate synthase KP728_04750 PF13288 DXP reductoisomerase C-terminal domain KP728_04750 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KP728_04750 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KP728_04755 PF17820 PDZ domain KP728_04755 PF02163 Peptidase family M50 KP728_04760 PF01103 Surface antigen KP728_04760 PF07244 Surface antigen variable number repeat KP728_04770 PF00132 Bacterial transferase hexapeptide (six repeats) KP728_04770 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KP728_04775 PF07977 FabA-like domain KP728_04780 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KP728_04780 PF00132 Bacterial transferase hexapeptide (six repeats) KP728_04785 PF02684 Lipid-A-disaccharide synthetase KP728_04790 PF01351 Ribonuclease HII KP728_04795 PF01336 OB-fold nucleic acid binding domain KP728_04795 PF02811 PHP domain KP728_04795 PF07733 Bacterial DNA polymerase III alpha NTPase domain KP728_04795 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KP728_04795 PF14579 Helix-hairpin-helix motif KP728_04800 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KP728_04805 PF03653 Uncharacterised protein family (UPF0093) KP728_04820 PF03551 Transcriptional regulator PadR-like family KP728_04835 PF02592 Putative vitamin uptake transporter KP728_04840 PF01810 LysE type translocator KP728_04855 PF02574 Homocysteine S-methyltransferase KP728_04860 PF00324 Amino acid permease KP728_04880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KP728_04885 PF13732 Domain of unknown function (DUF4162) KP728_04885 PF00005 ABC transporter KP728_04900 PF09334 tRNA synthetases class I (M) KP728_04900 PF01588 Putative tRNA binding domain KP728_04910 PF04060 Putative Fe-S cluster KP728_04925 PF04542 Sigma-70 region 2 KP728_04925 PF04545 Sigma-70, region 4 KP728_04970 PF01042 Endoribonuclease L-PSP KP728_04980 PF09924 Uncharacterised conserved protein (DUF2156) KP728_04980 PF03706 Lysylphosphatidylglycerol synthase TM region KP728_05015 PF07690 Major Facilitator Superfamily KP728_05020 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KP728_05040 PF08274 PhnA Zinc-Ribbon KP728_05040 PF03831 PhnA domain KP728_05050 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KP728_05075 PF08281 Sigma-70, region 4 KP728_05075 PF04542 Sigma-70 region 2 KP728_05095 PF01258 Prokaryotic dksA/traR C4-type zinc finger KP728_05105 PF07043 Protein of unknown function (DUF1328) KP728_05110 PF01863 Protein of unknown function DUF45 KP728_05120 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KP728_05120 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KP728_05125 PF03797 Autotransporter beta-domain KP728_05125 PF12951 Passenger-associated-transport-repeat KP728_05125 PF00082 Subtilase family KP728_05130 PF02803 Thiolase, C-terminal domain KP728_05130 PF00108 Thiolase, N-terminal domain KP728_05145 PF00072 Response regulator receiver domain KP728_05145 PF00990 Diguanylate cyclase, GGDEF domain KP728_05160 PF01068 ATP dependent DNA ligase domain KP728_05160 PF04679 ATP dependent DNA ligase C terminal region KP728_05160 PF04675 DNA ligase N terminus KP728_05170 PF01068 ATP dependent DNA ligase domain KP728_05170 PF04679 ATP dependent DNA ligase C terminal region KP728_05170 PF04675 DNA ligase N terminus KP728_05175 PF00271 Helicase conserved C-terminal domain KP728_05175 PF08494 DEAD/H associated KP728_05175 PF00270 DEAD/DEAH box helicase KP728_05185 PF01494 FAD binding domain KP728_05190 PF00313 'Cold-shock' DNA-binding domain KP728_05195 PF01048 Phosphorylase superfamily KP728_05200 PF00156 Phosphoribosyl transferase domain KP728_05205 PF00933 Glycosyl hydrolase family 3 N terminal domain KP728_05210 PF04244 Deoxyribodipyrimidine photo-lyase-related protein KP728_05215 PF01593 Flavin containing amine oxidoreductase KP728_05220 PF01323 DSBA-like thioredoxin domain KP728_05225 PF01928 CYTH domain KP728_05230 PF05958 tRNA (Uracil-5-)-methyltransferase KP728_05240 PF02565 Recombination protein O C terminal KP728_05240 PF11967 Recombination protein O N terminal KP728_05245 PF07650 KH domain KP728_05245 PF01926 50S ribosome-binding GTPase KP728_05250 PF14622 Ribonuclease-III-like KP728_05250 PF00035 Double-stranded RNA binding motif KP728_05260 PF10502 Signal peptidase, peptidase S26 KP728_05265 PF00679 Elongation factor G C-terminus KP728_05265 PF00009 Elongation factor Tu GTP binding domain KP728_05265 PF03144 Elongation factor Tu domain 2 KP728_05265 PF06421 GTP-binding protein LepA C-terminus KP728_05280 PF13180 PDZ domain KP728_05290 PF08281 Sigma-70, region 4 KP728_05290 PF04542 Sigma-70 region 2 KP728_05295 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KP728_05295 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KP728_05295 PF00378 Enoyl-CoA hydratase/isomerase KP728_05300 PF00593 TonB dependent receptor KP728_05300 PF07715 TonB-dependent Receptor Plug Domain KP728_05305 PF13181 Tetratricopeptide repeat KP728_05325 PF01545 Cation efflux family KP728_05330 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KP728_05330 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KP728_05335 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KP728_05335 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KP728_05335 PF00378 Enoyl-CoA hydratase/isomerase KP728_05340 PF00378 Enoyl-CoA hydratase/isomerase KP728_05345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KP728_05345 PF02770 Acyl-CoA dehydrogenase, middle domain KP728_05345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KP728_05350 PF00171 Aldehyde dehydrogenase family KP728_05355 PF01381 Helix-turn-helix KP728_05355 PF06114 IrrE N-terminal-like domain KP728_05355 PF09856 Predicted transcriptional regulator (DUF2083) KP728_05365 PF07745 Glycosyl hydrolase family 53 KP728_05370 PF02929 Beta galactosidase small chain KP728_05370 PF16353 Domain of unknown function(DUF4981) KP728_05370 PF00703 Glycosyl hydrolases family 2 KP728_05370 PF02836 Glycosyl hydrolases family 2, TIM barrel domain KP728_05370 PF02837 Glycosyl hydrolases family 2, sugar binding domain KP728_05385 PF05190 MutS family domain IV KP728_05385 PF00488 MutS domain V KP728_05385 PF01624 MutS domain I KP728_05385 PF05188 MutS domain II KP728_05385 PF05192 MutS domain III KP728_05395 PF00141 Peroxidase KP728_05400 PF01479 S4 domain KP728_05405 PF01554 MatE KP728_05410 PF01245 Ribosomal protein L19 KP728_05415 PF01746 tRNA (Guanine-1)-methyltransferase KP728_05420 PF05239 PRC-barrel domain KP728_05420 PF01782 RimM N-terminal domain KP728_05425 PF00886 Ribosomal protein S16 KP728_05435 PF03060 Nitronate monooxygenase KP728_05440 PF02881 SRP54-type protein, helical bundle domain KP728_05440 PF02978 Signal peptide binding domain KP728_05440 PF00448 SRP54-type protein, GTPase domain KP728_05450 PF01263 Aldose 1-epimerase KP728_05455 PF06964 Alpha-L-arabinofuranosidase C-terminal domain KP728_05460 PF03466 LysR substrate binding domain KP728_05460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_05480 PF00072 Response regulator receiver domain KP728_05485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_05485 PF13426 PAS domain KP728_05485 PF00072 Response regulator receiver domain KP728_05490 PF00072 Response regulator receiver domain KP728_05490 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KP728_05490 PF00512 His Kinase A (phospho-acceptor) domain KP728_05490 PF00672 HAMP domain KP728_05490 PF01627 Hpt domain KP728_05490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_05495 PF01739 CheR methyltransferase, SAM binding domain KP728_05495 PF03705 CheR methyltransferase, all-alpha domain KP728_05500 PF01339 CheB methylesterase KP728_05505 PF00512 His Kinase A (phospho-acceptor) domain KP728_05505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_05505 PF13492 GAF domain KP728_05505 PF13493 Domain of unknown function (DUF4118) KP728_05505 PF02702 Osmosensitive K+ channel His kinase sensor domain KP728_05510 PF07237 Protein of unknown function (DUF1428) KP728_05515 PF00085 Thioredoxin KP728_05520 PF00593 TonB dependent receptor KP728_05520 PF07715 TonB-dependent Receptor Plug Domain KP728_05530 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain KP728_05530 PF04616 Glycosyl hydrolases family 43 KP728_05535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_05535 PF00512 His Kinase A (phospho-acceptor) domain KP728_05535 PF08448 PAS fold KP728_05535 PF13188 PAS domain KP728_05535 PF00072 Response regulator receiver domain KP728_05540 PF00512 His Kinase A (phospho-acceptor) domain KP728_05540 PF01627 Hpt domain KP728_05540 PF00072 Response regulator receiver domain KP728_05540 PF00672 HAMP domain KP728_05540 PF17149 Periplasmic sensor domain found in signal transduction proteins KP728_05540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_05550 PF13581 Histidine kinase-like ATPase domain KP728_05555 PF01740 STAS domain KP728_05560 PF08678 Rsbr N terminal KP728_05560 PF01740 STAS domain KP728_05565 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KP728_05575 PF00183 Hsp90 protein KP728_05575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_05580 PF12833 Helix-turn-helix domain KP728_05590 PF05656 Protein of unknown function (DUF805) KP728_05595 PF18073 Rubredoxin metal binding domain KP728_05605 PF03626 Prokaryotic Cytochrome C oxidase subunit IV KP728_05610 PF00510 Cytochrome c oxidase subunit III KP728_05615 PF00115 Cytochrome C and Quinol oxidase polypeptide I KP728_05620 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KP728_05620 PF06481 COX Aromatic Rich Motif KP728_05630 PF02401 LytB protein KP728_05635 PF01252 Signal peptidase (SPase) II KP728_05640 PF06827 Zinc finger found in FPG and IleRS KP728_05640 PF08264 Anticodon-binding domain of tRNA KP728_05640 PF00133 tRNA synthetases class I (I, L, M and V) KP728_05645 PF01687 Riboflavin kinase KP728_05645 PF06574 FAD synthetase KP728_05650 PF03023 Lipid II flippase MurJ KP728_05655 PF01649 Ribosomal protein S20 KP728_05660 PF01018 GTP1/OBG KP728_05660 PF01926 50S ribosome-binding GTPase KP728_05665 PF01016 Ribosomal L27 protein KP728_05670 PF00829 Ribosomal prokaryotic L21 protein KP728_05675 PF17760 UvrA interaction domain KP728_05675 PF00005 ABC transporter KP728_05675 PF17755 UvrA DNA-binding domain KP728_05690 PF00378 Enoyl-CoA hydratase/isomerase KP728_05705 PF04542 Sigma-70 region 2 KP728_05705 PF08281 Sigma-70, region 4 KP728_05715 PF04377 Arginine-tRNA-protein transferase, C terminus KP728_05715 PF04376 Arginine-tRNA-protein transferase, N terminus KP728_05725 PF02222 ATP-grasp domain KP728_05725 PF01370 NAD dependent epimerase/dehydratase family KP728_05750 PF00730 HhH-GPD superfamily base excision DNA repair protein KP728_05765 PF00196 Bacterial regulatory proteins, luxR family KP728_05765 PF00072 Response regulator receiver domain KP728_05770 PF07730 Histidine kinase KP728_05780 PF03775 Septum formation inhibitor MinC, C-terminal domain KP728_05780 PF05209 Septum formation inhibitor MinC, N-terminal domain KP728_05785 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KP728_05790 PF03776 Septum formation topological specificity factor MinE KP728_05800 PF01261 Xylose isomerase-like TIM barrel KP728_05800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KP728_05805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_05805 PF00512 His Kinase A (phospho-acceptor) domain KP728_05810 PF00072 Response regulator receiver domain KP728_05810 PF00486 Transcriptional regulatory protein, C terminal KP728_05825 PF08019 Phosphoethanolamine transferase EptA/EptB KP728_05825 PF00884 Sulfatase KP728_05845 PF07690 Major Facilitator Superfamily KP728_05850 PF02347 Glycine cleavage system P-protein KP728_05855 PF00135 Carboxylesterase family KP728_05860 PF00248 Aldo/keto reductase family KP728_05865 PF18011 C-terminal domain found in long catalases KP728_05865 PF00199 Catalase KP728_05865 PF06628 Catalase-related immune-responsive KP728_05870 PF12833 Helix-turn-helix domain KP728_05870 PF02311 AraC-like ligand binding domain KP728_05885 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region KP728_05885 PF07676 WD40-like Beta Propeller Repeat KP728_05885 PF00326 Prolyl oligopeptidase family KP728_05890 PF04966 Carbohydrate-selective porin, OprB family KP728_05895 PF01011 PQQ enzyme repeat KP728_05905 PF03169 OPT oligopeptide transporter protein KP728_05915 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KP728_05915 PF14579 Helix-hairpin-helix motif KP728_05915 PF02811 PHP domain KP728_05915 PF07733 Bacterial DNA polymerase III alpha NTPase domain KP728_05930 PF01726 LexA DNA binding domain KP728_05930 PF00717 Peptidase S24-like KP728_05955 PF00328 Histidine phosphatase superfamily (branch 2) KP728_05970 PF04542 Sigma-70 region 2 KP728_05970 PF08281 Sigma-70, region 4 KP728_05975 PF01799 [2Fe-2S] binding domain KP728_05975 PF10518 TAT (twin-arginine translocation) pathway signal sequence KP728_05975 PF00111 2Fe-2S iron-sulfur cluster binding domain KP728_05980 PF03450 CO dehydrogenase flavoprotein C-terminal domain KP728_05980 PF00941 FAD binding domain in molybdopterin dehydrogenase KP728_05985 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KP728_05985 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KP728_05990 PF07729 FCD domain KP728_05990 PF00392 Bacterial regulatory proteins, gntR family KP728_06000 PF14592 Chondroitinase B KP728_06005 PF05426 Alginate lyase KP728_06005 PF07940 Heparinase II/III-like protein KP728_06010 PF07690 Major Facilitator Superfamily KP728_06025 PF04239 Protein of unknown function (DUF421) KP728_06030 PF14310 Fibronectin type III-like domain KP728_06030 PF01915 Glycosyl hydrolase family 3 C-terminal domain KP728_06030 PF00933 Glycosyl hydrolase family 3 N terminal domain KP728_06035 PF17755 UvrA DNA-binding domain KP728_06055 PF07992 Pyridine nucleotide-disulphide oxidoreductase KP728_06065 PF07971 Glycosyl hydrolase family 92 KP728_06065 PF17678 Glycosyl hydrolase family 92 N-terminal domain KP728_06085 PF01256 Carbohydrate kinase KP728_06090 PF13456 Reverse transcriptase-like KP728_06090 PF00300 Histidine phosphatase superfamily (branch 1) KP728_06095 PF13977 BetI-type transcriptional repressor, C-terminal KP728_06095 PF00440 Bacterial regulatory proteins, tetR family KP728_06140 PF11867 Domain of unknown function (DUF3387) KP728_06140 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KP728_06140 PF18766 SWI2/SNF2 ATPase KP728_06155 PF01909 Nucleotidyltransferase domain KP728_06160 PF08780 Nucleotidyltransferase substrate binding protein like KP728_06220 PF00440 Bacterial regulatory proteins, tetR family KP728_06250 PF01609 Transposase DDE domain KP728_06250 PF13006 Insertion element 4 transposase N-terminal KP728_06250 PF01609 Transposase DDE domain KP728_06250 PF13006 Insertion element 4 transposase N-terminal KP728_06255 PF11838 ERAP1-like C-terminal domain KP728_06255 PF01433 Peptidase family M1 domain KP728_06260 PF00709 Adenylosuccinate synthetase KP728_06275 PF01145 SPFH domain / Band 7 family KP728_06280 PF01145 SPFH domain / Band 7 family KP728_06280 PF12221 Bacterial membrane protein N terminal KP728_06285 PF00072 Response regulator receiver domain KP728_06290 PF00226 DnaJ domain KP728_06290 PF01556 DnaJ C terminal domain KP728_06300 PF08534 Redoxin KP728_06310 PF06832 Penicillin-Binding Protein C-terminus Family KP728_06310 PF00912 Transglycosylase KP728_06310 PF00905 Penicillin binding protein transpeptidase domain KP728_06335 PF00207 Alpha-2-macroglobulin family KP728_06335 PF07703 Alpha-2-macroglobulin bait region domain KP728_06335 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain KP728_06335 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain KP728_06335 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain KP728_06335 PF11974 Bacterial alpha-2-macroglobulin MG3 domain KP728_06335 PF17962 Bacterial macroglobulin domain 6 KP728_06335 PF01835 MG2 domain KP728_06345 PF07715 TonB-dependent Receptor Plug Domain KP728_06345 PF00593 TonB dependent receptor KP728_06350 PF04303 PrpF protein KP728_06360 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH KP728_06365 PF00330 Aconitase family (aconitate hydratase) KP728_06365 PF00694 Aconitase C-terminal domain KP728_06370 PF00285 Citrate synthase, C-terminal domain KP728_06380 PF02954 Bacterial regulatory protein, Fis family KP728_06380 PF00158 Sigma-54 interaction domain KP728_06380 PF06506 Propionate catabolism activator KP728_06400 PF09115 DNA polymerase III, delta subunit, C terminal KP728_06405 PF02618 YceG-like family KP728_06410 PF04715 Anthranilate synthase component I, N terminal region KP728_06410 PF00425 chorismate binding enzyme KP728_06415 PF00109 Beta-ketoacyl synthase, N-terminal domain KP728_06415 PF02801 Beta-ketoacyl synthase, C-terminal domain KP728_06420 PF00550 Phosphopantetheine attachment site KP728_06430 PF00698 Acyl transferase domain KP728_06440 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KP728_06440 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KP728_06445 PF01783 Ribosomal L32p protein family KP728_06450 PF02620 Large ribosomal RNA subunit accumulation protein YceD KP728_06455 PF02545 Maf-like protein KP728_06475 PF07726 ATPase family associated with various cellular activities (AAA) KP728_06475 PF17863 AAA lid domain KP728_06485 PF01841 Transglutaminase-like superfamily KP728_06485 PF13559 Domain of unknown function (DUF4129) KP728_06485 PF11992 Domain of unknown function (DUF3488) KP728_06495 PF01230 HIT domain KP728_06500 PF02132 RecR protein KP728_06500 PF13662 Toprim domain KP728_06505 PF02575 YbaB/EbfC DNA-binding family KP728_06510 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding KP728_06510 PF12170 DNA polymerase III tau subunit V interacting with alpha KP728_06510 PF12169 DNA polymerase III subunits gamma and tau domain III KP728_06525 PF01926 50S ribosome-binding GTPase KP728_06540 PF12102 Domain of unknown function (DUF3578) KP728_06540 PF07728 AAA domain (dynein-related subfamily) KP728_06565 PF02391 MoaE protein KP728_06570 PF02597 ThiS family KP728_06575 PF01967 MoaC family KP728_06580 PF04055 Radical SAM superfamily KP728_06580 PF06463 Molybdenum Cofactor Synthesis C KP728_06585 PF00753 Metallo-beta-lactamase superfamily KP728_06585 PF12706 Beta-lactamase superfamily domain KP728_06595 PF01075 Glycosyltransferase family 9 (heptosyltransferase) KP728_06615 PF00929 Exonuclease KP728_06620 PF00075 RNase H KP728_06630 PF16123 Hydroxyacylglutathione hydrolase C-terminus KP728_06630 PF00753 Metallo-beta-lactamase superfamily KP728_06635 PF05257 CHAP domain KP728_06635 PF01476 LysM domain KP728_06660 PF00216 Bacterial DNA-binding protein KP728_06665 PF02190 ATP-dependent protease La (LON) substrate-binding domain KP728_06665 PF05362 Lon protease (S16) C-terminal proteolytic domain KP728_06665 PF00004 ATPase family associated with various cellular activities (AAA) KP728_06670 PF10431 C-terminal, D2-small domain, of ClpB protein KP728_06670 PF06689 ClpX C4-type zinc finger KP728_06670 PF07724 AAA domain (Cdc48 subfamily) KP728_06675 PF00574 Clp protease KP728_06680 PF05698 Bacterial trigger factor protein (TF) C-terminus KP728_06680 PF05697 Bacterial trigger factor protein (TF) KP728_06690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_06690 PF00512 His Kinase A (phospho-acceptor) domain KP728_06690 PF00989 PAS fold KP728_06725 PF00180 Isocitrate/isopropylmalate dehydrogenase KP728_06725 PF18324 Hypothetical protein TT1725 KP728_06735 PF00462 Glutaredoxin KP728_06740 PF01435 Peptidase family M48 KP728_06740 PF13181 Tetratricopeptide repeat KP728_06745 PF00072 Response regulator receiver domain KP728_06745 PF00486 Transcriptional regulatory protein, C terminal KP728_06750 PF00512 His Kinase A (phospho-acceptor) domain KP728_06750 PF00989 PAS fold KP728_06750 PF11808 Phosphate regulon sensor protein PhoR KP728_06750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_06755 PF02503 Polyphosphate kinase middle domain KP728_06755 PF13090 Polyphosphate kinase C-terminal domain 2 KP728_06755 PF17941 Polyphosphate kinase C-terminal domain 1 KP728_06755 PF13089 Polyphosphate kinase N-terminal domain KP728_06760 PF02541 Ppx/GppA phosphatase family KP728_06765 PF13439 Glycosyltransferase Family 4 KP728_06765 PF00534 Glycosyl transferases group 1 KP728_06770 PF01569 PAP2 superfamily KP728_06775 PF00149 Calcineurin-like phosphoesterase KP728_06790 PF04305 Protein of unknown function (DUF455) KP728_06795 PF00156 Phosphoribosyl transferase domain KP728_06810 PF02875 Mur ligase family, glutamate ligase domain KP728_06810 PF08245 Mur ligase middle domain KP728_06820 PF00300 Histidine phosphatase superfamily (branch 1) KP728_06830 PF05506 Domain of unknown function (DUF756) KP728_06830 PF04185 Phosphoesterase family KP728_06840 PF08240 Alcohol dehydrogenase GroES-like domain KP728_06840 PF00107 Zinc-binding dehydrogenase KP728_06850 PF12857 TOBE-like domain KP728_06850 PF00005 ABC transporter KP728_06850 PF17850 CysA C-terminal regulatory domain KP728_06855 PF00528 Binding-protein-dependent transport system inner membrane component KP728_06860 PF00528 Binding-protein-dependent transport system inner membrane component KP728_06870 PF00155 Aminotransferase class I and II KP728_06880 PF00849 RNA pseudouridylate synthase KP728_06890 PF00691 OmpA family KP728_06890 PF00223 Photosystem I psaA/psaB protein KP728_06895 PF08240 Alcohol dehydrogenase GroES-like domain KP728_06895 PF00107 Zinc-binding dehydrogenase KP728_06900 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KP728_06900 PF07992 Pyridine nucleotide-disulphide oxidoreductase KP728_06915 PF00043 Glutathione S-transferase, C-terminal domain KP728_06915 PF02798 Glutathione S-transferase, N-terminal domain KP728_06925 PF01609 Transposase DDE domain KP728_06925 PF13006 Insertion element 4 transposase N-terminal KP728_06925 PF01609 Transposase DDE domain KP728_06925 PF13006 Insertion element 4 transposase N-terminal KP728_06930 PF00056 lactate/malate dehydrogenase, NAD binding domain KP728_06930 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KP728_06935 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KP728_06940 PF00679 Elongation factor G C-terminus KP728_06940 PF00009 Elongation factor Tu GTP binding domain KP728_06940 PF03144 Elongation factor Tu domain 2 KP728_06950 PF01425 Amidase KP728_06960 PF01474 Class-II DAHP synthetase family KP728_06965 PF02600 Disulfide bond formation protein DsbB KP728_06970 PF01196 Ribosomal protein L17 KP728_06975 PF01000 RNA polymerase Rpb3/RpoA insert domain KP728_06975 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KP728_06975 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KP728_06980 PF00163 Ribosomal protein S4/S9 N-terminal domain KP728_06980 PF01479 S4 domain KP728_06985 PF00411 Ribosomal protein S11 KP728_06990 PF00416 Ribosomal protein S13/S18 KP728_06995 PF00344 SecY translocase KP728_07000 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KP728_07005 PF00327 Ribosomal protein L30p/L7e KP728_07010 PF00333 Ribosomal protein S5, N-terminal domain KP728_07010 PF03719 Ribosomal protein S5, C-terminal domain KP728_07015 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KP728_07020 PF00347 Ribosomal protein L6 KP728_07025 PF00410 Ribosomal protein S8 KP728_07030 PF00253 Ribosomal protein S14p/S29e KP728_07035 PF00281 Ribosomal protein L5 KP728_07035 PF00673 ribosomal L5P family C-terminus KP728_07040 PF00467 KOW motif KP728_07040 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KP728_07045 PF00238 Ribosomal protein L14p/L23e KP728_07050 PF00366 Ribosomal protein S17 KP728_07055 PF00831 Ribosomal L29 protein KP728_07060 PF00252 Ribosomal protein L16p/L10e KP728_07065 PF07650 KH domain KP728_07065 PF00189 Ribosomal protein S3, C-terminal domain KP728_07070 PF00237 Ribosomal protein L22p/L17e KP728_07075 PF00203 Ribosomal protein S19 KP728_07080 PF00181 Ribosomal Proteins L2, RNA binding domain KP728_07080 PF03947 Ribosomal Proteins L2, C-terminal domain KP728_07085 PF00276 Ribosomal protein L23 KP728_07090 PF00573 Ribosomal protein L4/L1 family KP728_07095 PF00297 Ribosomal protein L3 KP728_07100 PF00338 Ribosomal protein S10p/S20e KP728_07105 PF03144 Elongation factor Tu domain 2 KP728_07105 PF03143 Elongation factor Tu C-terminal domain KP728_07105 PF00009 Elongation factor Tu GTP binding domain KP728_07110 PF00679 Elongation factor G C-terminus KP728_07110 PF14492 Elongation Factor G, domain II KP728_07110 PF03764 Elongation factor G, domain IV KP728_07110 PF00009 Elongation factor Tu GTP binding domain KP728_07110 PF03144 Elongation factor Tu domain 2 KP728_07115 PF00177 Ribosomal protein S7p/S5e KP728_07120 PF00164 Ribosomal protein S12/S23 KP728_07125 PF00623 RNA polymerase Rpb1, domain 2 KP728_07125 PF04983 RNA polymerase Rpb1, domain 3 KP728_07125 PF05000 RNA polymerase Rpb1, domain 4 KP728_07125 PF04998 RNA polymerase Rpb1, domain 5 KP728_07125 PF04997 RNA polymerase Rpb1, domain 1 KP728_07130 PF00562 RNA polymerase Rpb2, domain 6 KP728_07130 PF04563 RNA polymerase beta subunit KP728_07130 PF04561 RNA polymerase Rpb2, domain 2 KP728_07130 PF04565 RNA polymerase Rpb2, domain 3 KP728_07130 PF10385 RNA polymerase beta subunit external 1 domain KP728_07130 PF04560 RNA polymerase Rpb2, domain 7 KP728_07135 PF16320 Ribosomal protein L7/L12 dimerisation domain KP728_07135 PF00542 Ribosomal protein L7/L12 C-terminal domain KP728_07140 PF00466 Ribosomal protein L10 KP728_07145 PF00687 Ribosomal protein L1p/L10e family KP728_07150 PF03946 Ribosomal protein L11, N-terminal domain KP728_07150 PF00298 Ribosomal protein L11, RNA binding domain KP728_07155 PF02357 Transcription termination factor nusG KP728_07155 PF00467 KOW motif KP728_07160 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KP728_07170 PF00009 Elongation factor Tu GTP binding domain KP728_07170 PF03144 Elongation factor Tu domain 2 KP728_07170 PF03143 Elongation factor Tu C-terminal domain KP728_07190 PF01926 50S ribosome-binding GTPase KP728_07190 PF06071 Protein of unknown function (DUF933) KP728_07195 PF01195 Peptidyl-tRNA hydrolase KP728_07200 PF01386 Ribosomal L25p family KP728_07200 PF14693 Ribosomal protein TL5, C-terminal domain KP728_07205 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KP728_07205 PF14572 Phosphoribosyl synthetase-associated domain KP728_07215 PF08544 GHMP kinases C terminal KP728_07215 PF00288 GHMP kinases N terminal domain KP728_07220 PF03550 Outer membrane lipoprotein LolB KP728_07230 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KP728_07230 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KP728_07230 PF01488 Shikimate / quinate 5-dehydrogenase KP728_07235 PF00472 RF-1 domain KP728_07235 PF03462 PCRF domain KP728_07245 PF00994 Probable molybdopterin binding domain KP728_07250 PF03976 Polyphosphate kinase 2 (PPK2) KP728_07260 PF00708 Acylphosphatase KP728_07265 PF08534 Redoxin KP728_07270 PF03631 Virulence factor BrkB KP728_07275 PF03358 NADPH-dependent FMN reductase KP728_07290 PF04073 Aminoacyl-tRNA editing domain KP728_07295 PF00082 Subtilase family KP728_07295 PF04151 Bacterial pre-peptidase C-terminal domain KP728_07300 PF00082 Subtilase family KP728_07300 PF04151 Bacterial pre-peptidase C-terminal domain KP728_07305 PF00082 Subtilase family KP728_07305 PF04151 Bacterial pre-peptidase C-terminal domain KP728_07310 PF01063 Amino-transferase class IV KP728_07325 PF02233 NAD(P) transhydrogenase beta subunit KP728_07330 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch KP728_07330 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KP728_07330 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KP728_07350 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KP728_07350 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KP728_07350 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch KP728_07375 PF01367 5'-3' exonuclease, C-terminal SAM fold KP728_07375 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KP728_07375 PF00476 DNA polymerase family A KP728_07375 PF01612 3'-5' exonuclease KP728_07380 PF00293 NUDIX domain KP728_07390 PF00561 alpha/beta hydrolase fold KP728_07395 PF05175 Methyltransferase small domain KP728_07395 PF17827 PrmC N-terminal domain KP728_07400 PF00578 AhpC/TSA family KP728_07400 PF10417 C-terminal domain of 1-Cys peroxiredoxin KP728_07405 PF13192 Thioredoxin domain KP728_07405 PF07992 Pyridine nucleotide-disulphide oxidoreductase KP728_07410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_07410 PF03466 LysR substrate binding domain KP728_07415 PF14760 Rnk N-terminus KP728_07415 PF01272 Transcription elongation factor, GreA/GreB, C-term KP728_07420 PF00923 Transaldolase/Fructose-6-phosphate aldolase KP728_07430 PF01625 Peptide methionine sulfoxide reductase KP728_07440 PF00072 Response regulator receiver domain KP728_07440 PF00196 Bacterial regulatory proteins, luxR family KP728_07445 PF17149 Periplasmic sensor domain found in signal transduction proteins KP728_07445 PF00512 His Kinase A (phospho-acceptor) domain KP728_07445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_07445 PF00672 HAMP domain KP728_07445 PF01627 Hpt domain KP728_07445 PF00072 Response regulator receiver domain KP728_07450 PF00072 Response regulator receiver domain KP728_07450 PF00990 Diguanylate cyclase, GGDEF domain KP728_07465 PF00749 tRNA synthetases class I (E and Q), catalytic domain KP728_07465 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KP728_07470 PF00892 EamA-like transporter family KP728_07490 PF01728 FtsJ-like methyltransferase KP728_07490 PF18125 RlmM ferredoxin-like domain KP728_07495 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KP728_07495 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KP728_07520 PF00378 Enoyl-CoA hydratase/isomerase KP728_07525 PF00171 Aldehyde dehydrogenase family KP728_07530 PF00501 AMP-binding enzyme KP728_07530 PF13193 AMP-binding enzyme C-terminal domain KP728_07535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_07535 PF03466 LysR substrate binding domain KP728_07540 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit KP728_07540 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KP728_07545 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KP728_07550 PF07729 FCD domain KP728_07550 PF00392 Bacterial regulatory proteins, gntR family KP728_07570 PF01494 FAD binding domain KP728_07575 PF01494 FAD binding domain KP728_07585 PF01923 Cobalamin adenosyltransferase KP728_07590 PF00850 Histone deacetylase domain KP728_07595 PF03968 OstA-like protein KP728_07595 PF04453 LPS transport system D KP728_07600 PF09312 SurA N-terminal domain KP728_07600 PF00639 PPIC-type PPIASE domain KP728_07605 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KP728_07610 PF00398 Ribosomal RNA adenine dimethylase KP728_07615 PF04379 ApaG domain KP728_07620 PF00149 Calcineurin-like phosphoesterase KP728_07625 PF00186 Dihydrofolate reductase KP728_07635 PF00303 Thymidylate synthase KP728_07640 PF01790 Prolipoprotein diacylglyceryl transferase KP728_07660 PF01219 Prokaryotic diacylglycerol kinase KP728_07670 PF08521 Two-component sensor kinase N-terminal KP728_07670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_07670 PF00512 His Kinase A (phospho-acceptor) domain KP728_07675 PF00072 Response regulator receiver domain KP728_07675 PF00486 Transcriptional regulatory protein, C terminal KP728_07680 PF13472 GDSL-like Lipase/Acylhydrolase family KP728_07685 PF00005 ABC transporter KP728_07695 PF02668 Taurine catabolism dioxygenase TauD, TfdA family KP728_07705 PF00005 ABC transporter KP728_07710 PF00528 Binding-protein-dependent transport system inner membrane component KP728_07730 PF00593 TonB dependent receptor KP728_07730 PF07715 TonB-dependent Receptor Plug Domain KP728_07740 PF00248 Aldo/keto reductase family KP728_07745 PF07670 Nucleoside recognition KP728_07745 PF07662 Na+ dependent nucleoside transporter C-terminus KP728_07745 PF01773 Na+ dependent nucleoside transporter N-terminus KP728_07750 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KP728_07750 PF00294 pfkB family carbohydrate kinase KP728_07755 PF01207 Dihydrouridine synthase (Dus) KP728_07760 PF13649 Methyltransferase domain KP728_07775 PF00438 S-adenosylmethionine synthetase, N-terminal domain KP728_07775 PF02772 S-adenosylmethionine synthetase, central domain KP728_07775 PF02773 S-adenosylmethionine synthetase, C-terminal domain KP728_07785 PF00328 Histidine phosphatase superfamily (branch 2) KP728_07790 PF00223 Photosystem I psaA/psaB protein KP728_07790 PF00691 OmpA family KP728_07810 PF00311 Phosphoenolpyruvate carboxylase KP728_07820 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KP728_07820 PF05221 S-adenosyl-L-homocysteine hydrolase KP728_07825 PF13649 Methyltransferase domain KP728_07850 PF00128 Alpha amylase, catalytic domain KP728_07855 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KP728_07865 PF00082 Subtilase family KP728_07865 PF09286 Pro-kumamolisin, activation domain KP728_07870 PF14765 Polyketide synthase dehydratase KP728_07870 PF00550 Phosphopantetheine attachment site KP728_07870 PF08659 KR domain KP728_07870 PF00109 Beta-ketoacyl synthase, N-terminal domain KP728_07870 PF16197 Ketoacyl-synthetase C-terminal extension KP728_07870 PF02801 Beta-ketoacyl synthase, C-terminal domain KP728_07870 PF00698 Acyl transferase domain KP728_07870 PF08240 Alcohol dehydrogenase GroES-like domain KP728_07870 PF00107 Zinc-binding dehydrogenase KP728_07875 PF02219 Methylenetetrahydrofolate reductase KP728_07890 PF00293 NUDIX domain KP728_07900 PF02810 SEC-C motif KP728_07900 PF07517 SecA DEAD-like domain KP728_07900 PF01043 SecA preprotein cross-linking domain KP728_07900 PF07516 SecA Wing and Scaffold domain KP728_07905 PF08525 Opacity-associated protein A N-terminal motif KP728_07905 PF01476 LysM domain KP728_07905 PF01551 Peptidase family M23 KP728_07915 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KP728_07920 PF12327 FtsZ family, C-terminal domain KP728_07920 PF00091 Tubulin/FtsZ family, GTPase domain KP728_07925 PF02491 SHS2 domain inserted in FTSA KP728_07930 PF03799 Cell division protein FtsQ KP728_07930 PF08478 POTRA domain, FtsQ-type KP728_07935 PF07478 D-ala D-ala ligase C-terminus KP728_07935 PF01820 D-ala D-ala ligase N-terminus KP728_07940 PF08245 Mur ligase middle domain KP728_07940 PF02875 Mur ligase family, glutamate ligase domain KP728_07940 PF01225 Mur ligase family, catalytic domain KP728_07945 PF04101 Glycosyltransferase family 28 C-terminal domain KP728_07945 PF03033 Glycosyltransferase family 28 N-terminal domain KP728_07950 PF01098 Cell cycle protein KP728_07955 PF00953 Glycosyl transferase family 4 KP728_07960 PF01225 Mur ligase family, catalytic domain KP728_07960 PF02875 Mur ligase family, glutamate ligase domain KP728_07960 PF08245 Mur ligase middle domain KP728_07965 PF01225 Mur ligase family, catalytic domain KP728_07965 PF02875 Mur ligase family, glutamate ligase domain KP728_07965 PF08245 Mur ligase middle domain KP728_07970 PF03717 Penicillin-binding Protein dimerisation domain KP728_07970 PF00905 Penicillin binding protein transpeptidase domain KP728_07975 PF04999 Cell division protein FtsL KP728_07980 PF01795 MraW methylase family KP728_07985 PF02381 MraZ protein, putative antitoxin-like KP728_08000 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KP728_08010 PF02021 Uncharacterised protein family UPF0102 KP728_08015 PF04307 LexA-binding, inner membrane-associated putative hydrolase KP728_08020 PF02913 FAD linked oxidases, C-terminal domain KP728_08020 PF01565 FAD binding domain KP728_08025 PF07676 WD40-like Beta Propeller Repeat KP728_08025 PF00326 Prolyl oligopeptidase family KP728_08030 PF00072 Response regulator receiver domain KP728_08030 PF00486 Transcriptional regulatory protein, C terminal KP728_08035 PF13493 Domain of unknown function (DUF4118) KP728_08035 PF02702 Osmosensitive K+ channel His kinase sensor domain KP728_08035 PF00512 His Kinase A (phospho-acceptor) domain KP728_08035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_08035 PF13492 GAF domain KP728_08040 PF02669 K+-transporting ATPase, c chain KP728_08050 PF03814 Potassium-transporting ATPase A subunit KP728_08065 PF00892 EamA-like transporter family KP728_08070 PF02567 Phenazine biosynthesis-like protein KP728_08075 PF00155 Aminotransferase class I and II KP728_08075 PF00392 Bacterial regulatory proteins, gntR family KP728_08080 PF00756 Putative esterase KP728_08085 PF04828 Glutathione-dependent formaldehyde-activating enzyme KP728_08090 PF08240 Alcohol dehydrogenase GroES-like domain KP728_08090 PF00107 Zinc-binding dehydrogenase KP728_08095 PF02583 Metal-sensitive transcriptional repressor KP728_08100 PF13581 Histidine kinase-like ATPase domain KP728_08100 PF07536 HWE histidine kinase KP728_08100 PF13426 PAS domain KP728_08115 PF00072 Response regulator receiver domain KP728_08115 PF00486 Transcriptional regulatory protein, C terminal KP728_08120 PF00672 HAMP domain KP728_08120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_08120 PF00512 His Kinase A (phospho-acceptor) domain KP728_08125 PF04107 Glutamate-cysteine ligase family 2(GCS2) KP728_08130 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KP728_08130 PF12833 Helix-turn-helix domain KP728_08135 PF10996 Beta-Casp domain KP728_08135 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KP728_08135 PF00753 Metallo-beta-lactamase superfamily KP728_08140 PF01926 50S ribosome-binding GTPase KP728_08145 PF00034 Cytochrome c KP728_08150 PF01323 DSBA-like thioredoxin domain KP728_08155 PF01323 DSBA-like thioredoxin domain KP728_08165 PF02028 BCCT, betaine/carnitine/choline family transporter KP728_08170 PF00171 Aldehyde dehydrogenase family KP728_08175 PF05199 GMC oxidoreductase KP728_08175 PF00732 GMC oxidoreductase KP728_08185 PF01037 Lrp/AsnC ligand binding domain KP728_08185 PF13404 AsnC-type helix-turn-helix domain KP728_08195 PF01965 DJ-1/PfpI family KP728_08195 PF12833 Helix-turn-helix domain KP728_08205 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain KP728_08205 PF01464 Transglycosylase SLT domain KP728_08210 PF01966 HD domain KP728_08210 PF01743 Poly A polymerase head domain KP728_08210 PF12627 Probable RNA and SrmB- binding site of polymerase A KP728_08220 PF01979 Amidohydrolase family KP728_08225 PF01380 SIS domain KP728_08230 PF00356 Bacterial regulatory proteins, lacI family KP728_08235 PF07690 Major Facilitator Superfamily KP728_08240 PF00392 Bacterial regulatory proteins, gntR family KP728_08240 PF07702 UTRA domain KP728_08255 PF16355 Domain of unknown function (DUF4982) KP728_08255 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 KP728_08255 PF00703 Glycosyl hydrolases family 2 KP728_08255 PF02837 Glycosyl hydrolases family 2, sugar binding domain KP728_08255 PF02836 Glycosyl hydrolases family 2, TIM barrel domain KP728_08280 PF03934 Type II secretion system (T2SS), protein K KP728_08285 PF11612 Type II secretion system (T2SS), protein J KP728_08285 PF07963 Prokaryotic N-terminal methylation motif KP728_08290 PF07963 Prokaryotic N-terminal methylation motif KP728_08290 PF02501 Type II secretion system (T2SS), protein I KP728_08295 PF12019 Type II transport protein GspH KP728_08295 PF07963 Prokaryotic N-terminal methylation motif KP728_08300 PF08334 Type II secretion system (T2SS), protein G KP728_08300 PF07963 Prokaryotic N-terminal methylation motif KP728_08305 PF00482 Type II secretion system (T2SS), protein F KP728_08310 PF00437 Type II/IV secretion system protein KP728_08315 PF03958 Bacterial type II/III secretion system short domain KP728_08315 PF00263 Bacterial type II and III secretion system protein KP728_08360 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KP728_08365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_08365 PF00512 His Kinase A (phospho-acceptor) domain KP728_08370 PF00072 Response regulator receiver domain KP728_08375 PF01590 GAF domain KP728_08375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_08375 PF00512 His Kinase A (phospho-acceptor) domain KP728_08375 PF08446 PAS fold KP728_08375 PF00360 Phytochrome region KP728_08380 PF04972 BON domain KP728_08385 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KP728_08385 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KP728_08390 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KP728_08390 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain KP728_08425 PF01467 Cytidylyltransferase-like KP728_08425 PF00293 NUDIX domain KP728_08435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_08435 PF03466 LysR substrate binding domain KP728_08445 PF11818 C-terminal domain of tail specific protease (DUF3340) KP728_08445 PF17804 Tail specific protease N-terminal domain KP728_08445 PF00595 PDZ domain KP728_08445 PF03572 Peptidase family S41 KP728_08450 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family KP728_08450 PF04055 Radical SAM superfamily KP728_08455 PF03099 Biotin/lipoate A/B protein ligase family KP728_08460 PF04359 Protein of unknown function (DUF493) KP728_08475 PF07943 Penicillin-binding protein 5, C-terminal domain KP728_08475 PF00768 D-alanyl-D-alanine carboxypeptidase KP728_08480 PF05036 Sporulation related domain KP728_08480 PF03330 Lytic transglycolase KP728_08485 PF13406 Transglycosylase SLT domain KP728_08490 PF00295 Glycosyl hydrolases family 28 KP728_08495 PF01098 Cell cycle protein KP728_08500 PF00905 Penicillin binding protein transpeptidase domain KP728_08500 PF03717 Penicillin-binding Protein dimerisation domain KP728_08510 PF04085 rod shape-determining protein MreC KP728_08525 PF00294 pfkB family carbohydrate kinase KP728_08530 PF02954 Bacterial regulatory protein, Fis family KP728_08530 PF00158 Sigma-54 interaction domain KP728_08530 PF01590 GAF domain KP728_08540 PF00107 Zinc-binding dehydrogenase KP728_08540 PF08240 Alcohol dehydrogenase GroES-like domain KP728_08555 PF00497 Bacterial extracellular solute-binding proteins, family 3 KP728_08560 PF13360 PQQ-like domain KP728_08575 PF01433 Peptidase family M1 domain KP728_08575 PF11838 ERAP1-like C-terminal domain KP728_08580 PF03707 Bacterial signalling protein N terminal repeat KP728_08580 PF00990 Diguanylate cyclase, GGDEF domain KP728_08580 PF00563 EAL domain KP728_08585 PF01209 ubiE/COQ5 methyltransferase family KP728_08595 PF13533 Biotin-lipoyl like KP728_08600 PF13673 Acetyltransferase (GNAT) domain KP728_08610 PF00004 ATPase family associated with various cellular activities (AAA) KP728_08610 PF10431 C-terminal, D2-small domain, of ClpB protein KP728_08610 PF07724 AAA domain (Cdc48 subfamily) KP728_08615 PF00227 Proteasome subunit KP728_08620 PF00589 Phage integrase family KP728_08620 PF02899 Phage integrase, N-terminal SAM-like domain KP728_08630 PF01678 Diaminopimelate epimerase KP728_08640 PF04304 Protein of unknown function (DUF454) KP728_08645 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain KP728_08645 PF00326 Prolyl oligopeptidase family KP728_08650 PF00155 Aminotransferase class I and II KP728_08655 PF00326 Prolyl oligopeptidase family KP728_08655 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain KP728_08680 PF03900 Porphobilinogen deaminase, C-terminal domain KP728_08680 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KP728_08685 PF04397 LytTr DNA-binding domain KP728_08685 PF00072 Response regulator receiver domain KP728_08690 PF07694 5TMR of 5TMR-LYT KP728_08690 PF06580 Histidine kinase KP728_08700 PF13632 Glycosyl transferase family group 2 KP728_08710 PF00990 Diguanylate cyclase, GGDEF domain KP728_08715 PF00916 Sulfate permease family KP728_08715 PF01740 STAS domain KP728_08720 PF00150 Cellulase (glycosyl hydrolase family 5) KP728_08720 PF00553 Cellulose binding domain KP728_08725 PF00672 HAMP domain KP728_08725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_08725 PF02203 Tar ligand binding domain homologue KP728_08730 PF00990 Diguanylate cyclase, GGDEF domain KP728_08730 PF03707 Bacterial signalling protein N terminal repeat KP728_08730 PF00563 EAL domain KP728_08750 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KP728_08750 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KP728_08760 PF01204 Trehalase KP728_08765 PF04616 Glycosyl hydrolases family 43 KP728_08785 PF01544 CorA-like Mg2+ transporter protein KP728_08795 PF00324 Amino acid permease KP728_08810 PF00497 Bacterial extracellular solute-binding proteins, family 3 KP728_08815 PF00892 EamA-like transporter family KP728_08840 PF07992 Pyridine nucleotide-disulphide oxidoreductase KP728_08850 PF00990 Diguanylate cyclase, GGDEF domain KP728_08855 PF07759 Protein of unknown function (DUF1615) KP728_08865 PF00326 Prolyl oligopeptidase family KP728_08865 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region KP728_08900 PF13409 Glutathione S-transferase, N-terminal domain KP728_08915 PF07859 alpha/beta hydrolase fold KP728_08920 PF07729 FCD domain KP728_08920 PF00392 Bacterial regulatory proteins, gntR family KP728_08945 PF00326 Prolyl oligopeptidase family KP728_08950 PF07715 TonB-dependent Receptor Plug Domain KP728_08950 PF00593 TonB dependent receptor KP728_08965 PF04542 Sigma-70 region 2 KP728_08965 PF08281 Sigma-70, region 4 KP728_09025 PF00989 PAS fold KP728_09025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_09025 PF00512 His Kinase A (phospho-acceptor) domain KP728_09030 PF17831 Pyruvate dehydrogenase E1 component middle domain KP728_09030 PF00456 Transketolase, thiamine diphosphate binding domain KP728_09035 PF07745 Glycosyl hydrolase family 53 KP728_09070 PF13419 Haloacid dehalogenase-like hydrolase KP728_09075 PF07729 FCD domain KP728_09075 PF00392 Bacterial regulatory proteins, gntR family KP728_09085 PF08659 KR domain KP728_09085 PF02801 Beta-ketoacyl synthase, C-terminal domain KP728_09085 PF00109 Beta-ketoacyl synthase, N-terminal domain KP728_09085 PF00698 Acyl transferase domain KP728_09085 PF00550 Phosphopantetheine attachment site KP728_09085 PF16197 Ketoacyl-synthetase C-terminal extension KP728_09090 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase KP728_09095 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG KP728_09105 PF01039 Carboxyl transferase domain KP728_09110 PF06857 Malonate decarboxylase delta subunit (MdcD) KP728_09115 PF16957 Malonate decarboxylase, alpha subunit, transporter KP728_09130 PF04264 YceI-like domain KP728_09135 PF00881 Nitroreductase family KP728_09160 PF03710 Glutamate-ammonia ligase adenylyltransferase KP728_09160 PF08335 GlnD PII-uridylyltransferase KP728_09180 PF00593 TonB dependent receptor KP728_09180 PF07660 Secretin and TonB N terminus short domain KP728_09180 PF07715 TonB-dependent Receptor Plug Domain KP728_09185 PF16220 Domain of unknown function (DUF4880) KP728_09185 PF04773 FecR protein KP728_09205 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KP728_09205 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KP728_09210 PF00793 DAHP synthetase I family KP728_09220 PF07715 TonB-dependent Receptor Plug Domain KP728_09220 PF00593 TonB dependent receptor KP728_09230 PF00118 TCP-1/cpn60 chaperonin family KP728_09235 PF00166 Chaperonin 10 Kd subunit KP728_09240 PF04231 Endonuclease I KP728_09245 PF03091 CutA1 divalent ion tolerance protein KP728_09250 PF02683 Cytochrome C biogenesis protein transmembrane region KP728_09250 PF11412 Disulphide bond corrector protein DsbC KP728_09255 PF01220 Dehydroquinase class II KP728_09260 PF00364 Biotin-requiring enzyme KP728_09270 PF02785 Biotin carboxylase C-terminal domain KP728_09270 PF00289 Biotin carboxylase, N-terminal domain KP728_09270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KP728_09305 PF02954 Bacterial regulatory protein, Fis family KP728_09310 PF00818 Ice nucleation protein repeat KP728_09310 PF00818 Ice nucleation protein repeat KP728_09325 PF01808 AICARFT/IMPCHase bienzyme KP728_09325 PF02142 MGS-like domain KP728_09330 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KP728_09330 PF02843 Phosphoribosylglycinamide synthetase, C domain KP728_09330 PF02844 Phosphoribosylglycinamide synthetase, N domain KP728_09335 PF12805 FUSC-like inner membrane protein yccS KP728_09340 PF07690 Major Facilitator Superfamily KP728_09345 PF03466 LysR substrate binding domain KP728_09345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_09365 PF03186 CobD/Cbib protein KP728_09365 PF17113 Regulatory signalling modulator protein AmpE KP728_09370 PF00293 NUDIX domain KP728_09370 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain KP728_09370 PF09297 NADH pyrophosphatase zinc ribbon domain KP728_09380 PF01521 Iron-sulphur cluster biosynthesis KP728_09400 PF00072 Response regulator receiver domain KP728_09400 PF00486 Transcriptional regulatory protein, C terminal KP728_09405 PF00072 Response regulator receiver domain KP728_09405 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KP728_09405 PF01627 Hpt domain KP728_09405 PF00512 His Kinase A (phospho-acceptor) domain KP728_09405 PF00672 HAMP domain KP728_09405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_09410 PF00210 Ferritin-like domain KP728_09420 PF00293 NUDIX domain KP728_09435 PF00380 Ribosomal protein S9/S16 KP728_09440 PF00572 Ribosomal protein L13 KP728_09445 PF03232 Ubiquinone biosynthesis protein COQ7 KP728_09450 PF00893 Small Multidrug Resistance protein KP728_09455 PF02675 S-adenosylmethionine decarboxylase KP728_09460 PF00325 Bacterial regulatory proteins, crp family KP728_09460 PF00027 Cyclic nucleotide-binding domain KP728_09470 PF00218 Indole-3-glycerol phosphate synthase KP728_09475 PF02885 Glycosyl transferase family, helical bundle domain KP728_09475 PF00591 Glycosyl transferase family, a/b domain KP728_09485 PF00117 Glutamine amidotransferase class-I KP728_09500 PF01464 Transglycosylase SLT domain KP728_09510 PF00263 Bacterial type II and III secretion system protein KP728_09510 PF03958 Bacterial type II/III secretion system short domain KP728_09525 PF02874 ATP synthase alpha/beta family, beta-barrel domain KP728_09525 PF18269 T3SS EscN ATPase C-terminal domain KP728_09525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KP728_09540 PF01514 Secretory protein of YscJ/FliF family KP728_09555 PF01312 FlhB HrpN YscU SpaS Family KP728_09560 PF00771 FHIPEP family KP728_09575 PF00813 FliP family KP728_09580 PF01313 Bacterial export proteins, family 3 KP728_09630 PF05819 NolX protein KP728_09635 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KP728_09635 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KP728_09640 PF00043 Glutathione S-transferase, C-terminal domain KP728_09640 PF02798 Glutathione S-transferase, N-terminal domain KP728_09645 PF14765 Polyketide synthase dehydratase KP728_09645 PF00550 Phosphopantetheine attachment site KP728_09645 PF02801 Beta-ketoacyl synthase, C-terminal domain KP728_09645 PF00698 Acyl transferase domain KP728_09645 PF08240 Alcohol dehydrogenase GroES-like domain KP728_09645 PF08990 Erythronolide synthase docking KP728_09645 PF16197 Ketoacyl-synthetase C-terminal extension KP728_09645 PF08659 KR domain KP728_09645 PF00109 Beta-ketoacyl synthase, N-terminal domain KP728_09650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_09650 PF03466 LysR substrate binding domain KP728_09660 PF03466 LysR substrate binding domain KP728_09660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_09665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_09665 PF03466 LysR substrate binding domain KP728_09680 PF04715 Anthranilate synthase component I, N terminal region KP728_09680 PF00425 chorismate binding enzyme KP728_09685 PF00781 Diacylglycerol kinase catalytic domain KP728_09695 PF00834 Ribulose-phosphate 3 epimerase family KP728_09705 PF00226 DnaJ domain KP728_09705 PF01556 DnaJ C terminal domain KP728_09705 PF00684 DnaJ central domain KP728_09710 PF01259 SAICAR synthetase KP728_09735 PF02868 Thermolysin metallopeptidase, alpha-helical domain KP728_09735 PF01447 Thermolysin metallopeptidase, catalytic domain KP728_09735 PF07504 Fungalysin/Thermolysin Propeptide Motif KP728_09735 PF01483 Proprotein convertase P-domain KP728_09750 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KP728_09750 PF00361 Proton-conducting membrane transporter KP728_09750 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter KP728_09750 PF13244 Domain of unknown function (DUF4040) KP728_09755 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KP728_09760 PF00361 Proton-conducting membrane transporter KP728_09770 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) KP728_09775 PF03334 Na+/H+ antiporter subunit KP728_09790 PF04209 homogentisate 1,2-dioxygenase KP728_09795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KP728_09800 PF01047 MarR family KP728_09805 PF13006 Insertion element 4 transposase N-terminal KP728_09805 PF01609 Transposase DDE domain KP728_09805 PF13006 Insertion element 4 transposase N-terminal KP728_09805 PF01609 Transposase DDE domain KP728_09815 PF00854 POT family KP728_09820 PF03301 Tryptophan 2,3-dioxygenase KP728_09830 PF00676 Dehydrogenase E1 component KP728_09835 PF02779 Transketolase, pyrimidine binding domain KP728_09835 PF02780 Transketolase, C-terminal domain KP728_09845 PF00364 Biotin-requiring enzyme KP728_09845 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KP728_09845 PF02817 e3 binding domain KP728_09850 PF00270 DEAD/DEAH box helicase KP728_09850 PF00271 Helicase conserved C-terminal domain KP728_09860 PF00106 short chain dehydrogenase KP728_09875 PF00440 Bacterial regulatory proteins, tetR family KP728_09885 PF06903 VirK protein KP728_09890 PF06903 VirK protein KP728_09910 PF13460 NAD(P)H-binding KP728_09915 PF00128 Alpha amylase, catalytic domain KP728_09915 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KP728_09925 PF00128 Alpha amylase, catalytic domain KP728_09930 PF02446 4-alpha-glucanotransferase KP728_09935 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KP728_09935 PF11941 Domain of unknown function (DUF3459) KP728_09935 PF00128 Alpha amylase, catalytic domain KP728_09940 PF00128 Alpha amylase, catalytic domain KP728_09940 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KP728_09940 PF02806 Alpha amylase, C-terminal all-beta domain KP728_09945 PF08323 Starch synthase catalytic domain KP728_09945 PF00534 Glycosyl transferases group 1 KP728_09950 PF00990 Diguanylate cyclase, GGDEF domain KP728_09955 PF05661 Protein of unknown function (DUF808) KP728_09960 PF03109 ABC1 family KP728_09965 PF00884 Sulfatase KP728_09970 PF00924 Mechanosensitive ion channel KP728_09970 PF12795 Mechanosensitive ion channel porin domain KP728_09970 PF12794 Mechanosensitive ion channel inner membrane domain 1 KP728_09995 PF00005 ABC transporter KP728_10000 PF00664 ABC transporter transmembrane region KP728_10000 PF00005 ABC transporter KP728_10000 PF08021 Siderophore-interacting FAD-binding domain KP728_10000 PF04954 Siderophore-interacting protein KP728_10005 PF07715 TonB-dependent Receptor Plug Domain KP728_10005 PF00593 TonB dependent receptor KP728_10020 PF00501 AMP-binding enzyme KP728_10020 PF00668 Condensation domain KP728_10020 PF08242 Methyltransferase domain KP728_10020 PF00550 Phosphopantetheine attachment site KP728_10030 PF00698 Acyl transferase domain KP728_10030 PF00668 Condensation domain KP728_10030 PF16197 Ketoacyl-synthetase C-terminal extension KP728_10030 PF00109 Beta-ketoacyl synthase, N-terminal domain KP728_10030 PF02801 Beta-ketoacyl synthase, C-terminal domain KP728_10030 PF00550 Phosphopantetheine attachment site KP728_10040 PF00975 Thioesterase domain KP728_10045 PF00501 AMP-binding enzyme KP728_10045 PF13193 AMP-binding enzyme C-terminal domain KP728_10055 PF00005 ABC transporter KP728_10065 PF07715 TonB-dependent Receptor Plug Domain KP728_10065 PF00593 TonB dependent receptor KP728_10095 PF01040 UbiA prenyltransferase family KP728_10105 PF06968 Biotin and Thiamin Synthesis associated domain KP728_10105 PF04055 Radical SAM superfamily KP728_10110 PF00155 Aminotransferase class I and II KP728_10115 PF12697 Alpha/beta hydrolase family KP728_10125 PF13649 Methyltransferase domain KP728_10150 PF00291 Pyridoxal-phosphate dependent enzyme KP728_10160 PF01134 Glucose inhibited division protein A KP728_10160 PF13932 GidA associated domain KP728_10170 PF00873 AcrB/AcrD/AcrF family KP728_10180 PF01614 Bacterial transcriptional regulator KP728_10180 PF09339 IclR helix-turn-helix domain KP728_10190 PF02627 Carboxymuconolactone decarboxylase family KP728_10195 PF12146 Serine aminopeptidase, S33 KP728_10200 PF10397 Adenylosuccinate lyase C-terminus KP728_10200 PF00206 Lyase KP728_10205 PF00775 Dioxygenase KP728_10210 PF00775 Dioxygenase KP728_10210 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal KP728_10215 PF02803 Thiolase, C-terminal domain KP728_10215 PF00108 Thiolase, N-terminal domain KP728_10220 PF01144 Coenzyme A transferase KP728_10225 PF01144 Coenzyme A transferase KP728_10230 PF00355 Rieske [2Fe-2S] domain KP728_10240 PF00970 Oxidoreductase FAD-binding domain KP728_10240 PF00111 2Fe-2S iron-sulfur cluster binding domain KP728_10245 PF00455 DeoR C terminal sensor domain KP728_10245 PF08220 DeoR-like helix-turn-helix domain KP728_10250 PF01266 FAD dependent oxidoreductase KP728_10250 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KP728_10255 PF00230 Major intrinsic protein KP728_10260 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KP728_10260 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KP728_10270 PF01494 FAD binding domain KP728_10280 PF00171 Aldehyde dehydrogenase family KP728_10300 PF11871 Domain of unknown function (DUF3391) KP728_10300 PF01966 HD domain KP728_10305 PF00132 Bacterial transferase hexapeptide (six repeats) KP728_10320 PF00920 Dehydratase family KP728_10335 PF01609 Transposase DDE domain KP728_10335 PF05598 Transposase domain (DUF772) KP728_10350 PF05598 Transposase domain (DUF772) KP728_10350 PF01609 Transposase DDE domain KP728_10420 PF00672 HAMP domain KP728_10420 PF02203 Tar ligand binding domain homologue KP728_10420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_10430 PF01638 HxlR-like helix-turn-helix KP728_10435 PF05368 NmrA-like family KP728_10445 PF13006 Insertion element 4 transposase N-terminal KP728_10445 PF01609 Transposase DDE domain KP728_10445 PF13006 Insertion element 4 transposase N-terminal KP728_10445 PF01609 Transposase DDE domain KP728_10450 PF08267 Cobalamin-independent synthase, N-terminal domain KP728_10450 PF01717 Cobalamin-independent synthase, Catalytic domain KP728_10460 PF03358 NADPH-dependent FMN reductase KP728_10465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_10465 PF03466 LysR substrate binding domain KP728_10470 PF02677 Epoxyqueuosine reductase QueH KP728_10475 PF02219 Methylenetetrahydrofolate reductase KP728_10505 PF02321 Outer membrane efflux protein KP728_10510 PF00873 AcrB/AcrD/AcrF family KP728_10515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KP728_10515 PF00529 HlyD membrane-fusion protein of T1SS KP728_10520 PF00512 His Kinase A (phospho-acceptor) domain KP728_10520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_10520 PF00672 HAMP domain KP728_10525 PF00486 Transcriptional regulatory protein, C terminal KP728_10525 PF00072 Response regulator receiver domain KP728_10530 PF07690 Major Facilitator Superfamily KP728_10535 PF00551 Formyl transferase KP728_10545 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KP728_10545 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KP728_10550 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KP728_10555 PF02146 Sir2 family KP728_10560 PF00486 Transcriptional regulatory protein, C terminal KP728_10560 PF00072 Response regulator receiver domain KP728_10565 PF00072 Response regulator receiver domain KP728_10565 PF13188 PAS domain KP728_10565 PF08448 PAS fold KP728_10565 PF00512 His Kinase A (phospho-acceptor) domain KP728_10565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_10575 PF04151 Bacterial pre-peptidase C-terminal domain KP728_10575 PF00082 Subtilase family KP728_10580 PF07690 Major Facilitator Superfamily KP728_10585 PF03466 LysR substrate binding domain KP728_10585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_10595 PF01026 TatD related DNase KP728_10600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_10600 PF03466 LysR substrate binding domain KP728_10605 PF00355 Rieske [2Fe-2S] domain KP728_10610 PF00111 2Fe-2S iron-sulfur cluster binding domain KP728_10620 PF01156 Inosine-uridine preferring nucleoside hydrolase KP728_10625 PF01425 Amidase KP728_10645 PF00561 alpha/beta hydrolase fold KP728_10650 PF03466 LysR substrate binding domain KP728_10650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_10660 PF03466 LysR substrate binding domain KP728_10660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_10665 PF07687 Peptidase dimerisation domain KP728_10665 PF01546 Peptidase family M20/M25/M40 KP728_10670 PF00266 Aminotransferase class-V KP728_10685 PF01014 Uricase KP728_10685 PF09349 OHCU decarboxylase KP728_10690 PF13454 FAD-NAD(P)-binding KP728_10695 PF00576 HIUase/Transthyretin family KP728_10700 PF07308 Protein of unknown function (DUF1456) KP728_10705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_10705 PF00672 HAMP domain KP728_10705 PF02203 Tar ligand binding domain homologue KP728_10710 PF00271 Helicase conserved C-terminal domain KP728_10710 PF00270 DEAD/DEAH box helicase KP728_10710 PF04408 Helicase associated domain (HA2) KP728_10710 PF08482 ATP-dependent helicase C-terminal KP728_10720 PF00849 RNA pseudouridylate synthase KP728_10730 PF00248 Aldo/keto reductase family KP728_10735 PF00107 Zinc-binding dehydrogenase KP728_10735 PF16884 N-terminal domain of oxidoreductase KP728_10740 PF00248 Aldo/keto reductase family KP728_10760 PF12697 Alpha/beta hydrolase family KP728_10765 PF02566 OsmC-like protein KP728_10770 PF01047 MarR family KP728_10775 PF03969 AFG1-like ATPase KP728_10795 PF02492 CobW/HypB/UreG, nucleotide-binding domain KP728_10795 PF07683 Cobalamin synthesis protein cobW C-terminal domain KP728_10850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KP728_10850 PF02770 Acyl-CoA dehydrogenase, middle domain KP728_10850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KP728_10855 PF01039 Carboxyl transferase domain KP728_10860 PF18140 Propionyl-coenzyme A carboxylase BT domain KP728_10860 PF02785 Biotin carboxylase C-terminal domain KP728_10860 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KP728_10860 PF00364 Biotin-requiring enzyme KP728_10860 PF00289 Biotin carboxylase, N-terminal domain KP728_10885 PF00990 Diguanylate cyclase, GGDEF domain KP728_10890 PF00463 Isocitrate lyase family KP728_10895 PF01274 Malate synthase KP728_10900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_10900 PF03466 LysR substrate binding domain KP728_10910 PF00999 Sodium/hydrogen exchanger family KP728_10915 PF12833 Helix-turn-helix domain KP728_10930 PF12706 Beta-lactamase superfamily domain KP728_10935 PF10502 Signal peptidase, peptidase S26 KP728_10940 PF01432 Peptidase family M3 KP728_10945 PF01112 Asparaginase KP728_10955 PF00472 RF-1 domain KP728_10965 PF00849 RNA pseudouridylate synthase KP728_10970 PF01596 O-methyltransferase KP728_10980 PF03109 ABC1 family KP728_10990 PF07478 D-ala D-ala ligase C-terminus KP728_10990 PF01820 D-ala D-ala ligase N-terminus KP728_11005 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family KP728_11010 PF00501 AMP-binding enzyme KP728_11015 PF03692 Putative zinc- or iron-chelating domain KP728_11020 PF00561 alpha/beta hydrolase fold KP728_11025 PF02661 Fic/DOC family KP728_11025 PF13784 Fic/DOC family N-terminal KP728_11030 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KP728_11030 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KP728_11045 PF00588 SpoU rRNA Methylase family KP728_11050 PF07690 Major Facilitator Superfamily KP728_11065 PF02954 Bacterial regulatory protein, Fis family KP728_11065 PF00072 Response regulator receiver domain KP728_11065 PF00158 Sigma-54 interaction domain KP728_11070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_11070 PF00512 His Kinase A (phospho-acceptor) domain KP728_11075 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KP728_11075 PF00205 Thiamine pyrophosphate enzyme, central domain KP728_11075 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KP728_11085 PF00813 FliP family KP728_11105 PF07559 Flagellar basal body protein FlaE KP728_11105 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KP728_11105 PF00460 Flagella basal body rod protein KP728_11110 PF03963 Flagellar hook capping protein - N-terminal region KP728_11125 PF18269 T3SS EscN ATPase C-terminal domain KP728_11125 PF02874 ATP synthase alpha/beta family, beta-barrel domain KP728_11125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KP728_11140 PF08345 Flagellar M-ring protein C-terminal KP728_11140 PF01514 Secretory protein of YscJ/FliF family KP728_11145 PF02049 Flagellar hook-basal body complex protein FliE KP728_11150 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KP728_11150 PF00460 Flagella basal body rod protein KP728_11160 PF02119 Flagellar P-ring protein KP728_11165 PF02107 Flagellar L-ring protein KP728_11175 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KP728_11175 PF00460 Flagella basal body rod protein KP728_11180 PF00460 Flagella basal body rod protein KP728_11180 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KP728_11185 PF00771 FHIPEP family KP728_11200 PF01313 Bacterial export proteins, family 3 KP728_11235 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KP728_11235 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KP728_11240 PF02556 Preprotein translocase subunit SecB KP728_11245 PF00581 Rhodanese-like domain KP728_11265 PF02602 Uroporphyrinogen-III synthase HemD KP728_11285 PF02803 Thiolase, C-terminal domain KP728_11285 PF00108 Thiolase, N-terminal domain KP728_11300 PF00080 Copper/zinc superoxide dismutase (SODC) KP728_11305 PF00080 Copper/zinc superoxide dismutase (SODC) KP728_11310 PF00158 Sigma-54 interaction domain KP728_11310 PF00072 Response regulator receiver domain KP728_11310 PF02954 Bacterial regulatory protein, Fis family KP728_11315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_11315 PF00512 His Kinase A (phospho-acceptor) domain KP728_11315 PF00989 PAS fold KP728_11320 PF00909 Ammonium Transporter Family KP728_11325 PF00543 Nitrogen regulatory protein P-II KP728_11330 PF03951 Glutamine synthetase, beta-Grasp domain KP728_11330 PF00120 Glutamine synthetase, catalytic domain KP728_11335 PF02673 Bacitracin resistance protein BacA KP728_11345 PF01161 Phosphatidylethanolamine-binding protein KP728_11365 PF03061 Thioesterase superfamily KP728_11370 PF13091 PLD-like domain KP728_11375 PF04264 YceI-like domain KP728_11385 PF01883 Iron-sulfur cluster assembly protein KP728_11385 PF10609 NUBPL iron-transfer P-loop NTPase KP728_11415 PF10017 Histidine-specific methyltransferase, SAM-dependent KP728_11420 PF03781 Sulfatase-modifying factor enzyme 1 KP728_11420 PF12867 DinB superfamily KP728_11430 PF00528 Binding-protein-dependent transport system inner membrane component KP728_11435 PF00005 ABC transporter KP728_11435 PF00571 CBS domain KP728_11450 PF00005 ABC transporter KP728_11460 PF01734 Patatin-like phospholipase KP728_11470 PF07660 Secretin and TonB N terminus short domain KP728_11470 PF00593 TonB dependent receptor KP728_11470 PF07715 TonB-dependent Receptor Plug Domain KP728_11475 PF01037 Lrp/AsnC ligand binding domain KP728_11480 PF00351 Biopterin-dependent aromatic amino acid hydroxylase KP728_11490 PF00990 Diguanylate cyclase, GGDEF domain KP728_11490 PF03707 Bacterial signalling protein N terminal repeat KP728_11490 PF00563 EAL domain KP728_11495 PF06745 KaiC KP728_11510 PF00657 GDSL-like Lipase/Acylhydrolase KP728_11525 PF04962 KduI/IolB family KP728_11530 PF00356 Bacterial regulatory proteins, lacI family KP728_11535 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain KP728_11535 PF04616 Glycosyl hydrolases family 43 KP728_11540 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component KP728_11550 PF03480 Bacterial extracellular solute-binding protein, family 7 KP728_11560 PF07859 alpha/beta hydrolase fold KP728_11560 PF13472 GDSL-like Lipase/Acylhydrolase family KP728_11565 PF00135 Carboxylesterase family KP728_11575 PF00248 Aldo/keto reductase family KP728_11605 PF02806 Alpha amylase, C-terminal all-beta domain KP728_11605 PF00128 Alpha amylase, catalytic domain KP728_11605 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KP728_11610 PF00128 Alpha amylase, catalytic domain KP728_11610 PF16657 Maltogenic Amylase, C-terminal domain KP728_11615 PF00128 Alpha amylase, catalytic domain KP728_11615 PF11896 Domain of unknown function (DUF3416) KP728_11660 PF00795 Carbon-nitrogen hydrolase KP728_11660 PF02540 NAD synthase KP728_11720 PF13676 TIR domain KP728_11755 PF00294 pfkB family carbohydrate kinase KP728_11765 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase KP728_11765 PF07055 Enoyl reductase FAD binding domain KP728_11765 PF12241 Trans-2-enoyl-CoA reductase catalytic region KP728_11770 PF00486 Transcriptional regulatory protein, C terminal KP728_11785 PF00072 Response regulator receiver domain KP728_11785 PF00196 Bacterial regulatory proteins, luxR family KP728_11790 PF07730 Histidine kinase KP728_11795 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family KP728_11800 PF01070 FMN-dependent dehydrogenase KP728_11810 PF04679 ATP dependent DNA ligase C terminal region KP728_11810 PF01068 ATP dependent DNA ligase domain KP728_11810 PF13298 DNA polymerase Ligase (LigD) KP728_11815 PF02735 Ku70/Ku80 beta-barrel domain KP728_11830 PF00107 Zinc-binding dehydrogenase KP728_11830 PF08240 Alcohol dehydrogenase GroES-like domain KP728_11835 PF00171 Aldehyde dehydrogenase family KP728_11840 PF01590 GAF domain KP728_11840 PF00158 Sigma-54 interaction domain KP728_11840 PF02954 Bacterial regulatory protein, Fis family KP728_11845 PF00005 ABC transporter KP728_11850 PF00528 Binding-protein-dependent transport system inner membrane component KP728_11855 PF00497 Bacterial extracellular solute-binding proteins, family 3 KP728_11865 PF02423 Ornithine cyclodeaminase/mu-crystallin family KP728_11875 PF07715 TonB-dependent Receptor Plug Domain KP728_11875 PF00593 TonB dependent receptor KP728_11880 PF00155 Aminotransferase class I and II KP728_11885 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain KP728_11900 PF00440 Bacterial regulatory proteins, tetR family KP728_11940 PF08946 Osmosensory transporter coiled coil KP728_11940 PF00083 Sugar (and other) transporter KP728_11945 PF00085 Thioredoxin KP728_11955 PF07859 alpha/beta hydrolase fold KP728_11960 PF09297 NADH pyrophosphatase zinc ribbon domain KP728_11960 PF00293 NUDIX domain KP728_11970 PF01447 Thermolysin metallopeptidase, catalytic domain KP728_11970 PF02868 Thermolysin metallopeptidase, alpha-helical domain KP728_11970 PF16485 Protealysin propeptide KP728_11990 PF05532 CsbD-like KP728_12005 PF04542 Sigma-70 region 2 KP728_12005 PF08281 Sigma-70, region 4 KP728_12030 PF01381 Helix-turn-helix KP728_12035 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB KP728_12040 PF13538 UvrD-like helicase C-terminal domain KP728_12045 PF12705 PD-(D/E)XK nuclease superfamily KP728_12045 PF00580 UvrD/REP helicase N-terminal domain KP728_12045 PF13361 UvrD-like helicase C-terminal domain KP728_12050 PF17946 RecC C-terminal domain KP728_12075 PF00583 Acetyltransferase (GNAT) family KP728_12085 PF00005 ABC transporter KP728_12090 PF02405 Permease MlaE KP728_12095 PF02470 MlaD protein KP728_12100 PF05494 MlaC protein KP728_12110 PF04333 MlaA lipoprotein KP728_12120 PF00255 Glutathione peroxidase KP728_12130 PF02646 RmuC family KP728_12140 PF13520 Amino acid permease KP728_12145 PF07971 Glycosyl hydrolase family 92 KP728_12145 PF17678 Glycosyl hydrolase family 92 N-terminal domain KP728_12155 PF13006 Insertion element 4 transposase N-terminal KP728_12155 PF01609 Transposase DDE domain KP728_12155 PF13006 Insertion element 4 transposase N-terminal KP728_12155 PF01609 Transposase DDE domain KP728_12165 PF00990 Diguanylate cyclase, GGDEF domain KP728_12170 PF13556 PucR C-terminal helix-turn-helix domain KP728_12170 PF17853 GGDEF-like domain KP728_12170 PF05651 Putative sugar diacid recognition KP728_12175 PF02595 Glycerate kinase family KP728_12180 PF07690 Major Facilitator Superfamily KP728_12195 PF01804 Penicillin amidase KP728_12200 PF07715 TonB-dependent Receptor Plug Domain KP728_12200 PF00593 TonB dependent receptor KP728_12230 PF17785 PUA-like domain KP728_12230 PF10672 S-adenosylmethionine-dependent methyltransferase KP728_12235 PF03741 Integral membrane protein TerC family KP728_12240 PF01694 Rhomboid family KP728_12245 PF03009 Glycerophosphoryl diester phosphodiesterase family KP728_12255 PF01569 PAP2 superfamily KP728_12260 PF00593 TonB dependent receptor KP728_12265 PF10396 GTP-binding protein TrmE N-terminus KP728_12265 PF12631 MnmE helical domain KP728_12265 PF01926 50S ribosome-binding GTPase KP728_12275 PF14849 YidC periplasmic domain KP728_12275 PF02096 60Kd inner membrane protein KP728_12280 PF00825 Ribonuclease P KP728_12285 PF00468 Ribosomal protein L34 KP728_12290 PF00308 Bacterial dnaA protein KP728_12290 PF08299 Bacterial dnaA protein helix-turn-helix KP728_12290 PF11638 DnaA N-terminal domain KP728_12295 PF00712 DNA polymerase III beta subunit, N-terminal domain KP728_12295 PF02767 DNA polymerase III beta subunit, central domain KP728_12295 PF02768 DNA polymerase III beta subunit, C-terminal domain KP728_12300 PF02463 RecF/RecN/SMC N terminal domain KP728_12305 PF00986 DNA gyrase B subunit, carboxyl terminus KP728_12305 PF18053 DNA gyrase B subunit insert domain KP728_12305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_12305 PF01751 Toprim domain KP728_12305 PF00204 DNA gyrase B KP728_12315 PF01435 Peptidase family M48 KP728_12325 PF03544 Gram-negative bacterial TonB protein C-terminal KP728_12330 PF01618 MotA/TolQ/ExbB proton channel family KP728_12335 PF02472 Biopolymer transport protein ExbD/TolR KP728_12340 PF02472 Biopolymer transport protein ExbD/TolR KP728_12345 PF02472 Biopolymer transport protein ExbD/TolR KP728_12350 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ KP728_12360 PF13091 PLD-like domain KP728_12360 PF13396 Phospholipase_D-nuclease N-terminal KP728_12365 PF04055 Radical SAM superfamily KP728_12375 PF13006 Insertion element 4 transposase N-terminal KP728_12375 PF01609 Transposase DDE domain KP728_12375 PF13006 Insertion element 4 transposase N-terminal KP728_12375 PF01609 Transposase DDE domain KP728_12380 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) KP728_12395 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KP728_12395 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KP728_12400 PF13180 PDZ domain KP728_12400 PF03572 Peptidase family S41 KP728_12405 PF01551 Peptidase family M23 KP728_12415 PF04389 Peptidase family M28 KP728_12425 PF00150 Cellulase (glycosyl hydrolase family 5) KP728_12430 PF00150 Cellulase (glycosyl hydrolase family 5) KP728_12435 PF00150 Cellulase (glycosyl hydrolase family 5) KP728_12440 PF08240 Alcohol dehydrogenase GroES-like domain KP728_12440 PF00107 Zinc-binding dehydrogenase KP728_12450 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KP728_12450 PF07992 Pyridine nucleotide-disulphide oxidoreductase KP728_12455 PF00310 Glutamine amidotransferases class-II KP728_12455 PF04898 Glutamate synthase central domain KP728_12455 PF01493 GXGXG motif KP728_12455 PF01645 Conserved region in glutamate synthase KP728_12470 PF00398 Ribosomal RNA adenine dimethylase KP728_12490 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain KP728_12490 PF06165 Glycosyltransferase family 36 KP728_12490 PF10091 Putative glucoamylase KP728_12535 PF00271 Helicase conserved C-terminal domain KP728_12535 PF09369 Domain of unknown function (DUF1998) KP728_12535 PF00270 DEAD/DEAH box helicase KP728_12540 PF03006 Haemolysin-III related KP728_12580 PF03466 LysR substrate binding domain KP728_12580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_12630 PF00849 RNA pseudouridylate synthase KP728_12700 PF13091 PLD-like domain KP728_12700 PF13396 Phospholipase_D-nuclease N-terminal KP728_12705 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family KP728_12715 PF00083 Sugar (and other) transporter KP728_12720 PF04632 Fusaric acid resistance protein family KP728_12725 PF02321 Outer membrane efflux protein KP728_12730 PF00529 HlyD membrane-fusion protein of T1SS KP728_12730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KP728_12735 PF07869 Protein of unknown function (DUF1656) KP728_12745 PF01227 GTP cyclohydrolase I KP728_12765 PF07715 TonB-dependent Receptor Plug Domain KP728_12765 PF00593 TonB dependent receptor KP728_12770 PF01925 Sulfite exporter TauE/SafE KP728_12775 PF02810 SEC-C motif KP728_12785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_12785 PF03466 LysR substrate binding domain KP728_12795 PF01263 Aldose 1-epimerase KP728_12800 PF07690 Major Facilitator Superfamily KP728_12805 PF01126 Heme oxygenase KP728_12810 PF01590 GAF domain KP728_12810 PF08446 PAS fold KP728_12810 PF13426 PAS domain KP728_12810 PF00360 Phytochrome region KP728_12820 PF03594 Benzoate membrane transport protein KP728_12855 PF06827 Zinc finger found in FPG and IleRS KP728_12855 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KP728_12855 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KP728_12865 PF04349 Periplasmic glucan biosynthesis protein, MdoG KP728_12870 PF01590 GAF domain KP728_12870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_12870 PF00512 His Kinase A (phospho-acceptor) domain KP728_12870 PF08446 PAS fold KP728_12870 PF00360 Phytochrome region KP728_12875 PF00265 Thymidine kinase KP728_12880 PF00580 UvrD/REP helicase N-terminal domain KP728_12880 PF13361 UvrD-like helicase C-terminal domain KP728_12885 PF13302 Acetyltransferase (GNAT) domain KP728_12895 PF04337 Protein of unknown function, DUF480 KP728_12900 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) KP728_12905 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KP728_12910 PF04820 Tryptophan halogenase KP728_12925 PF00356 Bacterial regulatory proteins, lacI family KP728_12935 PF01553 Acyltransferase KP728_12940 PF00550 Phosphopantetheine attachment site KP728_12940 PF14765 Polyketide synthase dehydratase KP728_12940 PF02801 Beta-ketoacyl synthase, C-terminal domain KP728_12940 PF08659 KR domain KP728_12940 PF16197 Ketoacyl-synthetase C-terminal extension KP728_12940 PF00109 Beta-ketoacyl synthase, N-terminal domain KP728_12940 PF08240 Alcohol dehydrogenase GroES-like domain KP728_12940 PF00698 Acyl transferase domain KP728_13005 PF02614 Glucuronate isomerase KP728_13015 PF00331 Glycosyl hydrolase family 10 KP728_13020 PF08450 SMP-30/Gluconolactonase/LRE-like region KP728_13035 PF02652 L-lactate permease KP728_13065 PF01232 Mannitol dehydrogenase Rossmann domain KP728_13065 PF08125 Mannitol dehydrogenase C-terminal domain KP728_13070 PF07691 PA14 domain KP728_13070 PF01915 Glycosyl hydrolase family 3 C-terminal domain KP728_13070 PF00933 Glycosyl hydrolase family 3 N terminal domain KP728_13070 PF14310 Fibronectin type III-like domain KP728_13075 PF04616 Glycosyl hydrolases family 43 KP728_13075 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain KP728_13080 PF13378 Enolase C-terminal domain-like KP728_13080 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KP728_13090 PF07477 Glycosyl hydrolase family 67 C-terminus KP728_13090 PF07488 Glycosyl hydrolase family 67 middle domain KP728_13090 PF03648 Glycosyl hydrolase family 67 N-terminus KP728_13095 PF00356 Bacterial regulatory proteins, lacI family KP728_13105 PF01171 PP-loop family KP728_13110 PF04381 Putative exonuclease, RdgC KP728_13120 PF12697 Alpha/beta hydrolase family KP728_13125 PF00762 Ferrochelatase KP728_13135 PF02416 mttA/Hcf106 family KP728_13140 PF02416 mttA/Hcf106 family KP728_13145 PF00902 Sec-independent protein translocase protein (TatC) KP728_13155 PF00117 Glutamine amidotransferase class-I KP728_13155 PF00958 GMP synthase C terminal domain KP728_13160 PF00437 Type II/IV secretion system protein KP728_13160 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KP728_13165 PF02091 Glycyl-tRNA synthetase alpha subunit KP728_13170 PF02092 Glycyl-tRNA synthetase beta subunit KP728_13170 PF05746 DALR anticodon binding domain KP728_13175 PF13181 Tetratricopeptide repeat KP728_13180 PF07715 TonB-dependent Receptor Plug Domain KP728_13180 PF00593 TonB dependent receptor KP728_13185 PF01103 Surface antigen KP728_13185 PF17243 POTRA domain TamA domain 1 KP728_13190 PF04357 TamB, inner membrane protein subunit of TAM complex KP728_13210 PF01011 PQQ enzyme repeat KP728_13210 PF13360 PQQ-like domain KP728_13210 PF13570 PQQ-like domain KP728_13230 PF06165 Glycosyltransferase family 36 KP728_13230 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain KP728_13235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_13235 PF00512 His Kinase A (phospho-acceptor) domain KP728_13240 PF02659 Putative manganese efflux pump KP728_13245 PF09339 IclR helix-turn-helix domain KP728_13245 PF01614 Bacterial transcriptional regulator KP728_13250 PF07690 Major Facilitator Superfamily KP728_13255 PF05336 L-rhamnose mutarotase KP728_13260 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KP728_13260 PF13378 Enolase C-terminal domain-like KP728_13265 PF01557 Fumarylacetoacetate (FAA) hydrolase family KP728_13280 PF00248 Aldo/keto reductase family KP728_13285 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain KP728_13285 PF04616 Glycosyl hydrolases family 43 KP728_13310 PF00072 Response regulator receiver domain KP728_13310 PF00196 Bacterial regulatory proteins, luxR family KP728_13315 PF16177 Acetyl-coenzyme A synthetase N-terminus KP728_13315 PF00501 AMP-binding enzyme KP728_13315 PF13193 AMP-binding enzyme C-terminal domain KP728_13330 PF00474 Sodium:solute symporter family KP728_13340 PF00639 PPIC-type PPIASE domain KP728_13340 PF09312 SurA N-terminal domain KP728_13350 PF00480 ROK family KP728_13365 PF04226 Transglycosylase associated protein KP728_13370 PF01648 4'-phosphopantetheinyl transferase superfamily KP728_13375 PF09423 PhoD-like phosphatase KP728_13375 PF16655 PhoD-like phosphatase, N-terminal domain KP728_13380 PF16655 PhoD-like phosphatase, N-terminal domain KP728_13380 PF09423 PhoD-like phosphatase KP728_13385 PF02527 rRNA small subunit methyltransferase G KP728_13405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KP728_13410 PF00873 AcrB/AcrD/AcrF family KP728_13415 PF00830 Ribosomal L28 family KP728_13420 PF00471 Ribosomal protein L33 KP728_13425 PF04909 Amidohydrolase KP728_13430 PF04303 PrpF protein KP728_13435 PF03737 Aldolase/RraA KP728_13440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_13440 PF03466 LysR substrate binding domain KP728_13445 PF13091 PLD-like domain KP728_13445 PF13396 Phospholipase_D-nuclease N-terminal KP728_13455 PF00580 UvrD/REP helicase N-terminal domain KP728_13455 PF13361 UvrD-like helicase C-terminal domain KP728_13460 PF12464 Maltose acetyltransferase KP728_13460 PF14602 Hexapeptide repeat of succinyl-transferase KP728_13485 PF03793 PASTA domain KP728_13485 PF00069 Protein kinase domain KP728_13495 PF00476 DNA polymerase family A KP728_13495 PF01367 5'-3' exonuclease, C-terminal SAM fold KP728_13495 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KP728_13495 PF01612 3'-5' exonuclease KP728_13500 PF01218 Coproporphyrinogen III oxidase KP728_13530 PF04820 Tryptophan halogenase KP728_13535 PF00550 Phosphopantetheine attachment site KP728_13545 PF01553 Acyltransferase KP728_13550 PF07977 FabA-like domain KP728_13590 PF04820 Tryptophan halogenase KP728_13605 PF00109 Beta-ketoacyl synthase, N-terminal domain KP728_13605 PF02801 Beta-ketoacyl synthase, C-terminal domain KP728_13610 PF05166 YcgL domain KP728_13625 PF00723 Glycosyl hydrolases family 15 KP728_13630 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain KP728_13630 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain KP728_13635 PF00999 Sodium/hydrogen exchanger family KP728_13635 PF02254 TrkA-N domain KP728_13640 PF01769 Divalent cation transporter KP728_13640 PF03448 MgtE intracellular N domain KP728_13640 PF00571 CBS domain KP728_13645 PF07715 TonB-dependent Receptor Plug Domain KP728_13645 PF04886 PT repeat KP728_13645 PF00593 TonB dependent receptor KP728_13660 PF00583 Acetyltransferase (GNAT) family KP728_13660 PF13380 CoA binding domain KP728_13660 PF13607 Succinyl-CoA ligase like flavodoxin domain KP728_13670 PF02867 Ribonucleotide reductase, barrel domain KP728_13670 PF03477 ATP cone domain KP728_13670 PF00317 Ribonucleotide reductase, all-alpha domain KP728_13675 PF00268 Ribonucleotide reductase, small chain KP728_13690 PF03061 Thioesterase superfamily KP728_13700 PF02558 Ketopantoate reductase PanE/ApbA KP728_13700 PF08546 Ketopantoate reductase PanE/ApbA C terminal KP728_13705 PF01061 ABC-2 type transporter KP728_13710 PF00005 ABC transporter KP728_13715 PF00970 Oxidoreductase FAD-binding domain KP728_13715 PF00111 2Fe-2S iron-sulfur cluster binding domain KP728_13715 PF00175 Oxidoreductase NAD-binding domain KP728_13720 PF01545 Cation efflux family KP728_13725 PF02583 Metal-sensitive transcriptional repressor KP728_13735 PF01229 Glycosyl hydrolases family 39 KP728_13745 PF01381 Helix-turn-helix KP728_13755 PF00005 ABC transporter KP728_13765 PF01609 Transposase DDE domain KP728_13765 PF13006 Insertion element 4 transposase N-terminal KP728_13765 PF01609 Transposase DDE domain KP728_13765 PF13006 Insertion element 4 transposase N-terminal KP728_13775 PF04820 Tryptophan halogenase KP728_13795 PF00043 Glutathione S-transferase, C-terminal domain KP728_13795 PF02798 Glutathione S-transferase, N-terminal domain KP728_13800 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region KP728_13800 PF00326 Prolyl oligopeptidase family KP728_13825 PF00490 Delta-aminolevulinic acid dehydratase KP728_13830 PF00667 FAD binding domain KP728_13830 PF00175 Oxidoreductase NAD-binding domain KP728_13830 PF00258 Flavodoxin KP728_13840 PF08501 Shikimate dehydrogenase substrate binding domain KP728_13840 PF01488 Shikimate / quinate 5-dehydrogenase KP728_13840 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KP728_13855 PF13307 Helicase C-terminal domain KP728_13855 PF06733 DEAD_2 KP728_13865 PF00199 Catalase KP728_13865 PF06628 Catalase-related immune-responsive KP728_13880 PF01207 Dihydrouridine synthase (Dus) KP728_13890 PF00072 Response regulator receiver domain KP728_13890 PF00486 Transcriptional regulatory protein, C terminal KP728_13895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_13910 PF06167 Glucose-regulated metallo-peptidase M90 KP728_13920 PF02237 Biotin protein ligase C terminal domain KP728_13920 PF03099 Biotin/lipoate A/B protein ligase family KP728_13920 PF08279 HTH domain KP728_13925 PF03309 Type III pantothenate kinase KP728_13940 PF02223 Thymidylate kinase KP728_13965 PF00491 Arginase family KP728_13980 PF05532 CsbD-like KP728_13985 PF00579 tRNA synthetases class I (W and Y) KP728_13990 PF00753 Metallo-beta-lactamase superfamily KP728_14010 PF00892 EamA-like transporter family KP728_14015 PF00892 EamA-like transporter family KP728_14035 PF00005 ABC transporter KP728_14040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KP728_14045 PF07730 Histidine kinase KP728_14050 PF00196 Bacterial regulatory proteins, luxR family KP728_14050 PF00072 Response regulator receiver domain KP728_14070 PF08281 Sigma-70, region 4 KP728_14070 PF04542 Sigma-70 region 2 KP728_14080 PF02789 Cytosol aminopeptidase family, N-terminal domain KP728_14080 PF00883 Cytosol aminopeptidase family, catalytic domain KP728_14085 PF13419 Haloacid dehalogenase-like hydrolase KP728_14090 PF01594 AI-2E family transporter KP728_14110 PF00595 PDZ domain KP728_14130 PF08521 Two-component sensor kinase N-terminal KP728_14130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_14130 PF00512 His Kinase A (phospho-acceptor) domain KP728_14135 PF00072 Response regulator receiver domain KP728_14135 PF00486 Transcriptional regulatory protein, C terminal KP728_14140 PF01370 NAD dependent epimerase/dehydratase family KP728_14140 PF08338 Domain of unknown function (DUF1731) KP728_14175 PF00440 Bacterial regulatory proteins, tetR family KP728_14180 PF00970 Oxidoreductase FAD-binding domain KP728_14180 PF00111 2Fe-2S iron-sulfur cluster binding domain KP728_14180 PF00175 Oxidoreductase NAD-binding domain KP728_14185 PF00487 Fatty acid desaturase KP728_14190 PF13006 Insertion element 4 transposase N-terminal KP728_14190 PF01609 Transposase DDE domain KP728_14190 PF13006 Insertion element 4 transposase N-terminal KP728_14190 PF01609 Transposase DDE domain KP728_14195 PF12792 CSS motif domain associated with EAL KP728_14195 PF00563 EAL domain KP728_14210 PF01078 Magnesium chelatase, subunit ChlI KP728_14210 PF13335 Magnesium chelatase, subunit ChlI C-terminal KP728_14215 PF04380 Membrane fusogenic activity KP728_14220 PF00543 Nitrogen regulatory protein P-II KP728_14275 PF17284 Spermidine synthase tetramerisation domain KP728_14280 PF17944 Arginine decarboxylase C-terminal helical extension KP728_14280 PF17810 Arginine decarboxylase helical bundle domain KP728_14280 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KP728_14285 PF00550 Phosphopantetheine attachment site KP728_14285 PF00501 AMP-binding enzyme KP728_14285 PF13193 AMP-binding enzyme C-terminal domain KP728_14285 PF00668 Condensation domain KP728_14285 PF00975 Thioesterase domain KP728_14285 PF00501 AMP-binding enzyme KP728_14285 PF00975 Thioesterase domain KP728_14285 PF00550 Phosphopantetheine attachment site KP728_14285 PF00668 Condensation domain KP728_14285 PF13193 AMP-binding enzyme C-terminal domain KP728_14290 PF03033 Glycosyltransferase family 28 N-terminal domain KP728_14295 PF01757 Acyltransferase family KP728_14300 PF00106 short chain dehydrogenase KP728_14315 PF00750 tRNA synthetases class I (R) KP728_14315 PF05746 DALR anticodon binding domain KP728_14315 PF03485 Arginyl tRNA synthetase N terminal domain KP728_14320 PF04002 RadC-like JAB domain KP728_14325 PF02441 Flavoprotein KP728_14325 PF04127 DNA / pantothenate metabolism flavoprotein KP728_14330 PF00692 dUTPase KP728_14335 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KP728_14335 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KP728_14335 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KP728_14335 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KP728_14350 PF00535 Glycosyl transferase family 2 KP728_14355 PF01370 NAD dependent epimerase/dehydratase family KP728_14370 PF17762 HTH domain found in ParB protein KP728_14370 PF02195 ParB-like nuclease domain KP728_14375 PF13614 AAA domain KP728_14385 PF00156 Phosphoribosyl transferase domain KP728_14390 PF03372 Endonuclease/Exonuclease/phosphatase family KP728_14395 PF07690 Major Facilitator Superfamily KP728_14405 PF03702 Anhydro-N-acetylmuramic acid kinase KP728_14410 PF04225 Opacity-associated protein A LysM-like domain KP728_14410 PF01551 Peptidase family M23 KP728_14415 PF00579 tRNA synthetases class I (W and Y) KP728_14445 PF01619 Proline dehydrogenase KP728_14445 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KP728_14445 PF14850 DNA-binding domain of Proline dehydrogenase KP728_14445 PF00171 Aldehyde dehydrogenase family KP728_14455 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KP728_14455 PF02790 Cytochrome C oxidase subunit II, transmembrane domain KP728_14460 PF00115 Cytochrome C and Quinol oxidase polypeptide I KP728_14470 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 KP728_14475 PF00510 Cytochrome c oxidase subunit III KP728_14500 PF01040 UbiA prenyltransferase family KP728_14510 PF13593 SBF-like CPA transporter family (DUF4137) KP728_14520 PF01807 CHC2 zinc finger KP728_14520 PF08275 DNA primase catalytic core, N-terminal domain KP728_14520 PF08278 DNA primase DnaG DnaB-binding KP728_14520 PF10410 DnaB-helicase binding domain of primase KP728_14525 PF03631 Virulence factor BrkB KP728_14530 PF09424 Yqey-like protein KP728_14535 PF01165 Ribosomal protein S21 KP728_14540 PF00814 Glycoprotease family KP728_14545 PF02152 Dihydroneopterin aldolase KP728_14550 PF14310 Fibronectin type III-like domain KP728_14550 PF01915 Glycosyl hydrolase family 3 C-terminal domain KP728_14550 PF00933 Glycosyl hydrolase family 3 N terminal domain KP728_14555 PF07995 Glucose / Sorbosone dehydrogenase KP728_14560 PF05360 yiaA/B two helix domain KP728_14575 PF13520 Amino acid permease KP728_14585 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KP728_14585 PF13378 Enolase C-terminal domain-like KP728_14595 PF01510 N-acetylmuramoyl-L-alanine amidase KP728_14600 PF01427 D-ala-D-ala dipeptidase KP728_14645 PF07063 Domain of unknown function (DUF1338) KP728_14650 PF00873 AcrB/AcrD/AcrF family KP728_14655 PF00873 AcrB/AcrD/AcrF family KP728_14660 PF13533 Biotin-lipoyl like KP728_14665 PF01546 Peptidase family M20/M25/M40 KP728_14665 PF07687 Peptidase dimerisation domain KP728_14670 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term KP728_14670 PF14489 QueF-like protein KP728_14675 PF01476 LysM domain KP728_14675 PF00756 Putative esterase KP728_14685 PF03971 Monomeric isocitrate dehydrogenase KP728_14690 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) KP728_14700 PF13006 Insertion element 4 transposase N-terminal KP728_14700 PF01609 Transposase DDE domain KP728_14700 PF13006 Insertion element 4 transposase N-terminal KP728_14700 PF01609 Transposase DDE domain KP728_14705 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KP728_14705 PF07498 Rho termination factor, N-terminal domain KP728_14705 PF07497 Rho termination factor, RNA-binding domain KP728_14710 PF00085 Thioredoxin KP728_14715 PF12300 ATP-dependent RNA helicase RhlB KP728_14715 PF00271 Helicase conserved C-terminal domain KP728_14715 PF00270 DEAD/DEAH box helicase KP728_14720 PF00005 ABC transporter KP728_14725 PF18075 FtsX extracellular domain KP728_14730 PF00072 Response regulator receiver domain KP728_14730 PF01339 CheB methylesterase KP728_14735 PF03167 Uracil DNA glycosylase superfamily KP728_14740 PF04542 Sigma-70 region 2 KP728_14740 PF04545 Sigma-70, region 4 KP728_14745 PF03458 UPF0126 domain KP728_14750 PF07992 Pyridine nucleotide-disulphide oxidoreductase KP728_14770 PF17764 3′ DNA-binding domain (3′BD) KP728_14770 PF00270 DEAD/DEAH box helicase KP728_14770 PF00271 Helicase conserved C-terminal domain KP728_14770 PF18074 Primosomal protein N C-terminal domain KP728_14770 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KP728_14785 PF01554 MatE KP728_14790 PF01343 Peptidase family S49 KP728_14815 PF01300 Telomere recombination KP728_14820 PF01131 DNA topoisomerase KP728_14820 PF01751 Toprim domain KP728_14820 PF13368 Topoisomerase C-terminal repeat KP728_14830 PF07963 Prokaryotic N-terminal methylation motif KP728_14830 PF00114 Pilin (bacterial filament) KP728_14835 PF04361 Protein of unknown function (DUF494) KP728_14840 PF02481 DNA recombination-mediator protein A KP728_14840 PF17782 DprA winged helix domain KP728_14845 PF01476 LysM domain KP728_14850 PF01327 Polypeptide deformylase KP728_14855 PF00551 Formyl transferase KP728_14855 PF02911 Formyl transferase, C-terminal domain KP728_14860 PF01189 16S rRNA methyltransferase RsmB/F KP728_14860 PF01029 NusB family KP728_14875 PF00535 Glycosyl transferase family 2 KP728_14895 PF00925 GTP cyclohydrolase II KP728_14910 PF02580 D-Tyr-tRNA(Tyr) deacylase KP728_14915 PF00140 Sigma-70 factor, region 1.2 KP728_14915 PF04542 Sigma-70 region 2 KP728_14915 PF04545 Sigma-70, region 4 KP728_14915 PF03979 Sigma-70 factor, region 1.1 KP728_14915 PF04539 Sigma-70 region 3 KP728_14915 PF04546 Sigma-70, non-essential region KP728_14930 PF00589 Phage integrase family KP728_14955 PF07996 Type IV secretion system proteins KP728_14970 PF04610 TrbL/VirB6 plasmid conjugal transfer protein KP728_14980 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system KP728_14985 PF09572 XamI restriction endonuclease KP728_14990 PF02384 N-6 DNA Methylase KP728_15000 PF00589 Phage integrase family KP728_15000 PF13356 Arm DNA-binding domain KP728_15115 PF00557 Metallopeptidase family M24 KP728_15120 PF00654 Voltage gated chloride channel KP728_15125 PF01740 STAS domain KP728_15125 PF00916 Sulfate permease family KP728_15170 PF00005 ABC transporter KP728_15185 PF00593 TonB dependent receptor KP728_15185 PF07715 TonB-dependent Receptor Plug Domain KP728_15210 PF07690 Major Facilitator Superfamily KP728_15215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_15215 PF03466 LysR substrate binding domain KP728_15240 PF08240 Alcohol dehydrogenase GroES-like domain KP728_15240 PF13823 Alcohol dehydrogenase GroES-associated KP728_15240 PF00107 Zinc-binding dehydrogenase KP728_15250 PF00664 ABC transporter transmembrane region KP728_15250 PF00005 ABC transporter KP728_15280 PF02954 Bacterial regulatory protein, Fis family KP728_15280 PF00072 Response regulator receiver domain KP728_15280 PF00158 Sigma-54 interaction domain KP728_15295 PF01339 CheB methylesterase KP728_15295 PF01739 CheR methyltransferase, SAM binding domain KP728_15295 PF08448 PAS fold KP728_15295 PF03705 CheR methyltransferase, all-alpha domain KP728_15305 PF05067 Manganese containing catalase KP728_15310 PF05974 Domain of unknown function (DUF892) KP728_15330 PF02743 Cache domain KP728_15330 PF00672 HAMP domain KP728_15330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_15330 PF06580 Histidine kinase KP728_15335 PF04397 LytTr DNA-binding domain KP728_15335 PF00072 Response regulator receiver domain KP728_15345 PF13520 Amino acid permease KP728_15360 PF01431 Peptidase family M13 KP728_15360 PF05649 Peptidase family M13 KP728_15370 PF00248 Aldo/keto reductase family KP728_15375 PF03358 NADPH-dependent FMN reductase KP728_15380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_15380 PF03466 LysR substrate binding domain KP728_15390 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KP728_15405 PF02469 Fasciclin domain KP728_15415 PF00999 Sodium/hydrogen exchanger family KP728_15420 PF00005 ABC transporter KP728_15425 PF01061 ABC-2 type transporter KP728_15450 PF00691 OmpA family KP728_15450 PF13677 Membrane MotB of proton-channel complex MotA/MotB KP728_15455 PF01618 MotA/TolQ/ExbB proton channel family KP728_15470 PF01641 SelR domain KP728_15480 PF01037 Lrp/AsnC ligand binding domain KP728_15485 PF01266 FAD dependent oxidoreductase KP728_15490 PF00842 Alanine racemase, C-terminal domain KP728_15490 PF01168 Alanine racemase, N-terminal domain KP728_15515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_15515 PF00512 His Kinase A (phospho-acceptor) domain KP728_15515 PF00989 PAS fold KP728_15525 PF07995 Glucose / Sorbosone dehydrogenase KP728_15535 PF08468 Methyltransferase small domain N-terminal KP728_15535 PF05175 Methyltransferase small domain KP728_15540 PF00849 RNA pseudouridylate synthase KP728_15540 PF01479 S4 domain KP728_15560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_15560 PF00512 His Kinase A (phospho-acceptor) domain KP728_15560 PF18415 Histidine kinase receptor ArcB trans-membrane domain KP728_15560 PF01627 Hpt domain KP728_15560 PF00989 PAS fold KP728_15560 PF00072 Response regulator receiver domain KP728_15570 PF04461 Protein of unknown function (DUF520) KP728_15575 PF00892 EamA-like transporter family KP728_15580 PF09383 NIL domain KP728_15580 PF00005 ABC transporter KP728_15585 PF00528 Binding-protein-dependent transport system inner membrane component KP728_15590 PF03180 NLPA lipoprotein KP728_15620 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KP728_15620 PF00364 Biotin-requiring enzyme KP728_15620 PF02817 e3 binding domain KP728_15630 PF07992 Pyridine nucleotide-disulphide oxidoreductase KP728_15630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KP728_15645 PF00119 ATP synthase A chain KP728_15650 PF00137 ATP synthase subunit C KP728_15655 PF00430 ATP synthase B/B' CF(0) KP728_15660 PF00213 ATP synthase delta (OSCP) subunit KP728_15665 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KP728_15665 PF00306 ATP synthase alpha/beta chain, C terminal domain KP728_15665 PF02874 ATP synthase alpha/beta family, beta-barrel domain KP728_15670 PF00231 ATP synthase KP728_15675 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KP728_15675 PF02874 ATP synthase alpha/beta family, beta-barrel domain KP728_15680 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KP728_15680 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain KP728_15685 PF01817 Chorismate mutase type II KP728_15695 PF14602 Hexapeptide repeat of succinyl-transferase KP728_15695 PF00132 Bacterial transferase hexapeptide (six repeats) KP728_15695 PF12804 MobA-like NTP transferase domain KP728_15705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_15705 PF00512 His Kinase A (phospho-acceptor) domain KP728_15710 PF02954 Bacterial regulatory protein, Fis family KP728_15710 PF00072 Response regulator receiver domain KP728_15710 PF00158 Sigma-54 interaction domain KP728_15715 PF12704 MacB-like periplasmic core domain KP728_15715 PF00005 ABC transporter KP728_15715 PF02687 FtsX-like permease family KP728_15720 PF02687 FtsX-like permease family KP728_15720 PF12704 MacB-like periplasmic core domain KP728_15720 PF00005 ABC transporter KP728_15725 PF00005 ABC transporter KP728_15730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KP728_15735 PF01380 SIS domain KP728_15740 PF00027 Cyclic nucleotide-binding domain KP728_15740 PF13545 Crp-like helix-turn-helix domain KP728_15765 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KP728_15770 PF05275 Copper resistance protein B precursor (CopB) KP728_15775 PF07732 Multicopper oxidase KP728_15775 PF07731 Multicopper oxidase KP728_15775 PF00394 Multicopper oxidase KP728_15790 PF01432 Peptidase family M3 KP728_15795 PF00109 Beta-ketoacyl synthase, N-terminal domain KP728_15795 PF02801 Beta-ketoacyl synthase, C-terminal domain KP728_15800 PF07977 FabA-like domain KP728_15805 PF11799 impB/mucB/samB family C-terminal domain KP728_15805 PF00817 impB/mucB/samB family KP728_15810 PF13419 Haloacid dehalogenase-like hydrolase KP728_15815 PF07715 TonB-dependent Receptor Plug Domain KP728_15815 PF00593 TonB dependent receptor KP728_15820 PF00756 Putative esterase KP728_15830 PF13185 GAF domain KP728_15845 PF01242 6-pyruvoyl tetrahydropterin synthase KP728_15850 PF07715 TonB-dependent Receptor Plug Domain KP728_15850 PF00593 TonB dependent receptor KP728_15860 PF00271 Helicase conserved C-terminal domain KP728_15860 PF00270 DEAD/DEAH box helicase KP728_15870 PF14497 Glutathione S-transferase, C-terminal domain KP728_15870 PF02798 Glutathione S-transferase, N-terminal domain KP728_15875 PF00437 Type II/IV secretion system protein KP728_15895 PF00291 Pyridoxal-phosphate dependent enzyme KP728_15895 PF00571 CBS domain KP728_15900 PF01053 Cys/Met metabolism PLP-dependent enzyme KP728_15910 PF00005 ABC transporter KP728_15915 PF05045 Rhamnan synthesis protein F KP728_15915 PF14307 Glycosyltransferase WbsX KP728_15935 PF07992 Pyridine nucleotide-disulphide oxidoreductase KP728_15935 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KP728_15940 PF01370 NAD dependent epimerase/dehydratase family KP728_15945 PF00106 short chain dehydrogenase KP728_15950 PF04030 D-arabinono-1,4-lactone oxidase KP728_15950 PF01565 FAD binding domain KP728_15955 PF01040 UbiA prenyltransferase family KP728_15965 PF00766 Electron transfer flavoprotein FAD-binding domain KP728_15965 PF01012 Electron transfer flavoprotein domain KP728_15970 PF01012 Electron transfer flavoprotein domain KP728_15975 PF16363 GDP-mannose 4,6 dehydratase KP728_15980 PF00483 Nucleotidyl transferase KP728_15985 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase KP728_15990 PF04321 RmlD substrate binding domain KP728_15995 PF01050 Mannose-6-phosphate isomerase KP728_15995 PF00483 Nucleotidyl transferase KP728_16000 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KP728_16000 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KP728_16000 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KP728_16000 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KP728_16005 PF01144 Coenzyme A transferase KP728_16010 PF01144 Coenzyme A transferase KP728_16015 PF05045 Rhamnan synthesis protein F KP728_16015 PF14307 Glycosyltransferase WbsX KP728_16035 PF02470 MlaD protein KP728_16035 PF03886 ABC-type transport auxiliary lipoprotein component KP728_16040 PF00005 ABC transporter KP728_16045 PF02405 Permease MlaE KP728_16060 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KP728_16060 PF04073 Aminoacyl-tRNA editing domain KP728_16060 PF03129 Anticodon binding domain KP728_16070 PF01066 CDP-alcohol phosphatidyltransferase KP728_16090 PF08264 Anticodon-binding domain of tRNA KP728_16090 PF00133 tRNA synthetases class I (I, L, M and V) KP728_16090 PF10458 Valyl tRNA synthetase tRNA binding arm KP728_16100 PF00883 Cytosol aminopeptidase family, catalytic domain KP728_16100 PF02789 Cytosol aminopeptidase family, N-terminal domain KP728_16110 PF03739 Lipopolysaccharide export system permease LptF/LptG KP728_16120 PF02899 Phage integrase, N-terminal SAM-like domain KP728_16120 PF00589 Phage integrase family KP728_16125 PF10411 Disulfide bond isomerase protein N-terminus KP728_16125 PF13098 Thioredoxin-like domain KP728_16130 PF02769 AIR synthase related protein, C-terminal domain KP728_16130 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KP728_16130 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal KP728_16135 PF13018 Extended Signal Peptide of Type V secretion system KP728_16135 PF03895 YadA-like membrane anchor domain KP728_16135 PF05658 Head domain of trimeric autotransporter adhesin KP728_16135 PF05662 Coiled stalk of trimeric autotransporter adhesin KP728_16140 PF04151 Bacterial pre-peptidase C-terminal domain KP728_16140 PF00082 Subtilase family KP728_16145 PF03895 YadA-like membrane anchor domain KP728_16145 PF13018 Extended Signal Peptide of Type V secretion system KP728_16145 PF05662 Coiled stalk of trimeric autotransporter adhesin KP728_16145 PF05658 Head domain of trimeric autotransporter adhesin KP728_16150 PF00082 Subtilase family KP728_16150 PF04151 Bacterial pre-peptidase C-terminal domain KP728_16155 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KP728_16155 PF00437 Type II/IV secretion system protein KP728_16160 PF00482 Type II secretion system (T2SS), protein F KP728_16165 PF08334 Type II secretion system (T2SS), protein G KP728_16170 PF12019 Type II transport protein GspH KP728_16175 PF07963 Prokaryotic N-terminal methylation motif KP728_16185 PF03934 Type II secretion system (T2SS), protein K KP728_16190 PF05137 Fimbrial assembly protein (PilN) KP728_16195 PF10741 Type II secretion system (T2SS), protein M subtype b KP728_16205 PF03958 Bacterial type II/III secretion system short domain KP728_16205 PF00263 Bacterial type II and III secretion system protein KP728_16215 PF00392 Bacterial regulatory proteins, gntR family KP728_16215 PF07702 UTRA domain KP728_16225 PF07715 TonB-dependent Receptor Plug Domain KP728_16225 PF00593 TonB dependent receptor KP728_16260 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KP728_16260 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KP728_16275 PF03552 Cellulose synthase KP728_16275 PF00535 Glycosyl transferase family 2 KP728_16275 PF07238 PilZ domain KP728_16280 PF03170 Bacterial cellulose synthase subunit KP728_16285 PF01270 Glycosyl hydrolases family 8 KP728_16290 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) KP728_16305 PF03960 ArsC family KP728_16310 PF01327 Polypeptide deformylase KP728_16315 PF00005 ABC transporter KP728_16315 PF12848 ABC transporter KP728_16325 PF00464 Serine hydroxymethyltransferase KP728_16330 PF03477 ATP cone domain KP728_16340 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KP728_16340 PF01872 RibD C-terminal domain KP728_16345 PF13006 Insertion element 4 transposase N-terminal KP728_16345 PF01609 Transposase DDE domain KP728_16345 PF13006 Insertion element 4 transposase N-terminal KP728_16345 PF01609 Transposase DDE domain KP728_16355 PF00677 Lumazine binding domain KP728_16360 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KP728_16360 PF00925 GTP cyclohydrolase II KP728_16365 PF00885 6,7-dimethyl-8-ribityllumazine synthase KP728_16370 PF01029 NusB family KP728_16375 PF00586 AIR synthase related protein, N-terminal domain KP728_16375 PF02769 AIR synthase related protein, C-terminal domain KP728_16405 PF01979 Amidohydrolase family KP728_16410 PF01979 Amidohydrolase family KP728_16420 PF05394 Avirulence protein KP728_16425 PF00462 Glutaredoxin KP728_16430 PF01522 Polysaccharide deacetylase KP728_16435 PF00593 TonB dependent receptor KP728_16435 PF07715 TonB-dependent Receptor Plug Domain KP728_16450 PF00155 Aminotransferase class I and II KP728_16455 PF03193 RsgA GTPase KP728_16475 PF00128 Alpha amylase, catalytic domain KP728_16490 PF00356 Bacterial regulatory proteins, lacI family KP728_16495 PF00106 short chain dehydrogenase KP728_16500 PF03600 Citrate transporter KP728_16510 PF00486 Transcriptional regulatory protein, C terminal KP728_16510 PF00072 Response regulator receiver domain KP728_16515 PF00512 His Kinase A (phospho-acceptor) domain KP728_16515 PF08521 Two-component sensor kinase N-terminal KP728_16515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_16525 PF00196 Bacterial regulatory proteins, luxR family KP728_16525 PF00072 Response regulator receiver domain KP728_16530 PF00248 Aldo/keto reductase family KP728_16535 PF07715 TonB-dependent Receptor Plug Domain KP728_16535 PF00593 TonB dependent receptor KP728_16540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_16540 PF03466 LysR substrate binding domain KP728_16550 PF07690 Major Facilitator Superfamily KP728_16555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_16555 PF00512 His Kinase A (phospho-acceptor) domain KP728_16565 PF00375 Sodium:dicarboxylate symporter family KP728_16570 PF00390 Malic enzyme, N-terminal domain KP728_16570 PF03949 Malic enzyme, NAD binding domain KP728_16570 PF01515 Phosphate acetyl/butaryl transferase KP728_16595 PF03279 Bacterial lipid A biosynthesis acyltransferase KP728_16600 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) KP728_16605 PF02321 Outer membrane efflux protein KP728_16620 PF00990 Diguanylate cyclase, GGDEF domain KP728_16625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_16630 PF00330 Aconitase family (aconitate hydratase) KP728_16635 PF00694 Aconitase C-terminal domain KP728_16640 PF08241 Methyltransferase domain KP728_16645 PF00180 Isocitrate/isopropylmalate dehydrogenase KP728_16650 PF08502 LeuA allosteric (dimerisation) domain KP728_16650 PF00682 HMGL-like KP728_16655 PF00291 Pyridoxal-phosphate dependent enzyme KP728_16665 PF00205 Thiamine pyrophosphate enzyme, central domain KP728_16665 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KP728_16665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KP728_16670 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KP728_16670 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KP728_16680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_16680 PF02203 Tar ligand binding domain homologue KP728_16680 PF00672 HAMP domain KP728_16685 PF07676 WD40-like Beta Propeller Repeat KP728_16685 PF00326 Prolyl oligopeptidase family KP728_16690 PF00593 TonB dependent receptor KP728_16690 PF07715 TonB-dependent Receptor Plug Domain KP728_16700 PF13667 ThiC-associated domain KP728_16700 PF01964 Radical SAM ThiC family KP728_16705 PF18500 CadC C-terminal domain 1 KP728_16705 PF00486 Transcriptional regulatory protein, C terminal KP728_16710 PF12833 Helix-turn-helix domain KP728_16715 PF07715 TonB-dependent Receptor Plug Domain KP728_16715 PF00593 TonB dependent receptor KP728_16725 PF00719 Inorganic pyrophosphatase KP728_16735 PF03030 Inorganic H+ pyrophosphatase KP728_16745 PF00365 Phosphofructokinase KP728_16755 PF01225 Mur ligase family, catalytic domain KP728_16755 PF02875 Mur ligase family, glutamate ligase domain KP728_16755 PF08245 Mur ligase middle domain KP728_16765 PF01062 Bestrophin, RFP-TM, chloride channel KP728_16770 PF01569 PAP2 superfamily KP728_16800 PF00202 Aminotransferase class-III KP728_16815 PF01593 Flavin containing amine oxidoreductase KP728_16820 PF00034 Cytochrome c KP728_16820 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KP728_16830 PF00155 Aminotransferase class I and II KP728_16835 PF00127 Copper binding proteins, plastocyanin/azurin family KP728_16840 PF01494 FAD binding domain KP728_16845 PF00196 Bacterial regulatory proteins, luxR family KP728_16845 PF17874 MalT-like TPR region KP728_16850 PF00202 Aminotransferase class-III KP728_16860 PF02581 Thiamine monophosphate synthase KP728_16865 PF00301 Rubredoxin KP728_16870 PF13369 Transglutaminase-like superfamily KP728_16880 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KP728_16890 PF01812 5-formyltetrahydrofolate cyclo-ligase family KP728_16900 PF05164 Cell division protein ZapA KP728_16910 PF03695 Uncharacterised protein family (UPF0149) KP728_16915 PF00557 Metallopeptidase family M24 KP728_16915 PF05195 Aminopeptidase P, N-terminal domain KP728_16920 PF00557 Metallopeptidase family M24 KP728_16935 PF06969 HemN C-terminal domain KP728_16935 PF04055 Radical SAM superfamily KP728_16940 PF01725 Ham1 family KP728_16950 PF01138 3' exoribonuclease family, domain 1 KP728_16950 PF03725 3' exoribonuclease family, domain 2 KP728_16955 PF08340 Domain of unknown function (DUF1732) KP728_16955 PF03755 YicC-like family, N-terminal region KP728_16960 PF00625 Guanylate kinase KP728_16965 PF01192 RNA polymerase Rpb6 KP728_16970 PF02824 TGS domain KP728_16970 PF13291 ACT domain KP728_16970 PF04607 Region found in RelA / SpoT proteins KP728_16975 PF01042 Endoribonuclease L-PSP KP728_16980 PF17191 RecG wedge domain KP728_16980 PF00270 DEAD/DEAH box helicase KP728_16980 PF00271 Helicase conserved C-terminal domain KP728_16985 PF01156 Inosine-uridine preferring nucleoside hydrolase KP728_16990 PF01197 Ribosomal protein L31 KP728_16995 PF00285 Citrate synthase, C-terminal domain KP728_17005 PF17092 Penicillin-binding protein OB-like domain KP728_17005 PF00912 Transglycosylase KP728_17005 PF00905 Penicillin binding protein transpeptidase domain KP728_17010 PF11104 Type IV pilus assembly protein PilM; KP728_17015 PF05137 Fimbrial assembly protein (PilN) KP728_17020 PF04350 Pilus assembly protein, PilO KP728_17025 PF04351 Pilus assembly protein, PilP KP728_17030 PF07660 Secretin and TonB N terminus short domain KP728_17030 PF00263 Bacterial type II and III secretion system protein KP728_17030 PF03958 Bacterial type II/III secretion system short domain KP728_17030 PF11741 AMIN domain KP728_17035 PF17863 AAA lid domain KP728_17035 PF07726 ATPase family associated with various cellular activities (AAA) KP728_17065 PF00375 Sodium:dicarboxylate symporter family KP728_17070 PF00456 Transketolase, thiamine diphosphate binding domain KP728_17070 PF02779 Transketolase, pyrimidine binding domain KP728_17070 PF02780 Transketolase, C-terminal domain KP728_17075 PF00593 TonB dependent receptor KP728_17075 PF07715 TonB-dependent Receptor Plug Domain KP728_17080 PF03466 LysR substrate binding domain KP728_17080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_17090 PF01551 Peptidase family M23 KP728_17090 PF04225 Opacity-associated protein A LysM-like domain KP728_17095 PF03734 L,D-transpeptidase catalytic domain KP728_17095 PF01476 LysM domain KP728_17140 PF03459 TOBE domain KP728_17140 PF00005 ABC transporter KP728_17145 PF00528 Binding-protein-dependent transport system inner membrane component KP728_17155 PF04273 Putative phosphatase (DUF442) KP728_17155 PF00753 Metallo-beta-lactamase superfamily KP728_17165 PF03922 OmpW family KP728_17180 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KP728_17180 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KP728_17200 PF00162 Phosphoglycerate kinase KP728_17205 PF13419 Haloacid dehalogenase-like hydrolase KP728_17210 PF00224 Pyruvate kinase, barrel domain KP728_17210 PF02887 Pyruvate kinase, alpha/beta domain KP728_17215 PF00274 Fructose-bisphosphate aldolase class-I KP728_17220 PF01661 Macro domain KP728_17230 PF00291 Pyridoxal-phosphate dependent enzyme KP728_17235 PF10414 Sirohaem synthase dimerisation region KP728_17235 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KP728_17235 PF14824 Sirohaem biosynthesis protein central KP728_17240 PF03466 LysR substrate binding domain KP728_17240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_17250 PF00672 HAMP domain KP728_17250 PF00512 His Kinase A (phospho-acceptor) domain KP728_17250 PF01627 Hpt domain KP728_17250 PF00072 Response regulator receiver domain KP728_17250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_17270 PF01507 Phosphoadenosine phosphosulfate reductase family KP728_17275 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KP728_17275 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KP728_17280 PF00175 Oxidoreductase NAD-binding domain KP728_17280 PF00667 FAD binding domain KP728_17280 PF00258 Flavodoxin KP728_17285 PF01507 Phosphoadenosine phosphosulfate reductase family KP728_17290 PF00009 Elongation factor Tu GTP binding domain KP728_17295 PF00529 HlyD membrane-fusion protein of T1SS KP728_17295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KP728_17300 PF00873 AcrB/AcrD/AcrF family KP728_17315 PF11838 ERAP1-like C-terminal domain KP728_17315 PF01433 Peptidase family M1 domain KP728_17330 PF08032 RNA 2'-O ribose methyltransferase substrate binding KP728_17330 PF00588 SpoU rRNA Methylase family KP728_17335 PF00135 Carboxylesterase family KP728_17345 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation KP728_17345 PF10566 Glycoside hydrolase 97 KP728_17345 PF14508 Glycosyl-hydrolase 97 N-terminal KP728_17350 PF02837 Glycosyl hydrolases family 2, sugar binding domain KP728_17350 PF00703 Glycosyl hydrolases family 2 KP728_17350 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain KP728_17360 PF00356 Bacterial regulatory proteins, lacI family KP728_17370 PF01741 Large-conductance mechanosensitive channel, MscL KP728_17375 PF01557 Fumarylacetoacetate (FAA) hydrolase family KP728_17390 PF02080 TrkA-C domain KP728_17390 PF03600 Citrate transporter KP728_17395 PF02390 Putative methyltransferase KP728_17400 PF05690 Thiazole biosynthesis protein ThiG KP728_17410 PF03797 Autotransporter beta-domain KP728_17410 PF00657 GDSL-like Lipase/Acylhydrolase KP728_17420 PF00589 Phage integrase family KP728_17420 PF14659 Phage integrase, N-terminal SAM-like domain KP728_17420 PF13356 Arm DNA-binding domain KP728_17430 PF01381 Helix-turn-helix KP728_17445 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system KP728_17485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_17485 PF03466 LysR substrate binding domain KP728_17505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_17505 PF03466 LysR substrate binding domain KP728_17510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_17510 PF03466 LysR substrate binding domain KP728_17515 PF07690 Major Facilitator Superfamily KP728_17520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_17520 PF03466 LysR substrate binding domain KP728_17525 PF07690 Major Facilitator Superfamily KP728_17530 PF07859 alpha/beta hydrolase fold KP728_17535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_17535 PF03466 LysR substrate binding domain KP728_17590 PF12728 Helix-turn-helix domain KP728_17595 PF00271 Helicase conserved C-terminal domain KP728_17595 PF00176 SNF2 family N-terminal domain KP728_17610 PF01555 DNA methylase KP728_17720 PF00145 C-5 cytosine-specific DNA methylase KP728_17725 PF01131 DNA topoisomerase KP728_17725 PF01751 Toprim domain KP728_17765 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KP728_17790 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KP728_17790 PF00128 Alpha amylase, catalytic domain KP728_17795 PF08443 RimK-like ATP-grasp domain KP728_17795 PF18030 RimK PreATP-grasp domain KP728_17805 PF00072 Response regulator receiver domain KP728_17805 PF00486 Transcriptional regulatory protein, C terminal KP728_17810 PF00989 PAS fold KP728_17810 PF00512 His Kinase A (phospho-acceptor) domain KP728_17810 PF11808 Phosphate regulon sensor protein PhoR KP728_17810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_17820 PF01121 Dephospho-CoA kinase KP728_17825 PF06750 Bacterial Peptidase A24 N-terminal domain KP728_17825 PF01478 Type IV leader peptidase family KP728_17830 PF00482 Type II secretion system (T2SS), protein F KP728_17835 PF07963 Prokaryotic N-terminal methylation motif KP728_17835 PF00114 Pilin (bacterial filament) KP728_17840 PF00437 Type II/IV secretion system protein KP728_17840 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KP728_17845 PF00158 Sigma-54 interaction domain KP728_17845 PF02954 Bacterial regulatory protein, Fis family KP728_17845 PF00072 Response regulator receiver domain KP728_17850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_17850 PF00512 His Kinase A (phospho-acceptor) domain KP728_17855 PF08442 ATP-grasp domain KP728_17855 PF00549 CoA-ligase KP728_17860 PF02629 CoA binding domain KP728_17860 PF00549 CoA-ligase KP728_17865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_17865 PF03466 LysR substrate binding domain KP728_17880 PF02540 NAD synthase KP728_17880 PF00795 Carbon-nitrogen hydrolase KP728_17890 PF13525 Outer membrane lipoprotein KP728_17895 PF00849 RNA pseudouridylate synthase KP728_17900 PF02578 Multi-copper polyphenol oxidoreductase laccase KP728_17910 PF00672 HAMP domain KP728_17910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_17910 PF02203 Tar ligand binding domain homologue KP728_17915 PF01011 PQQ enzyme repeat KP728_17920 PF00982 Glycosyltransferase family 20 KP728_17925 PF00723 Glycosyl hydrolases family 15 KP728_17930 PF02358 Trehalose-phosphatase KP728_17935 PF07715 TonB-dependent Receptor Plug Domain KP728_17935 PF00593 TonB dependent receptor KP728_17970 PF01541 GIY-YIG catalytic domain KP728_17975 PF07715 TonB-dependent Receptor Plug Domain KP728_17975 PF00593 TonB dependent receptor KP728_17980 PF00296 Luciferase-like monooxygenase KP728_17985 PF00248 Aldo/keto reductase family KP728_17990 PF09084 NMT1/THI5 like KP728_17995 PF00528 Binding-protein-dependent transport system inner membrane component KP728_18000 PF00005 ABC transporter KP728_18005 PF02861 Clp amino terminal domain, pathogenicity island component KP728_18005 PF00004 ATPase family associated with various cellular activities (AAA) KP728_18005 PF10431 C-terminal, D2-small domain, of ClpB protein KP728_18005 PF07724 AAA domain (Cdc48 subfamily) KP728_18005 PF17871 AAA lid domain KP728_18010 PF01053 Cys/Met metabolism PLP-dependent enzyme KP728_18015 PF00593 TonB dependent receptor KP728_18015 PF07715 TonB-dependent Receptor Plug Domain KP728_18025 PF02277 Phosphoribosyltransferase KP728_18040 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KP728_18040 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KP728_18045 PF06276 Ferric iron reductase FhuF-like transporter KP728_18045 PF04183 IucA / IucC family KP728_18050 PF07690 Major Facilitator Superfamily KP728_18055 PF04183 IucA / IucC family KP728_18055 PF06276 Ferric iron reductase FhuF-like transporter KP728_18065 PF00593 TonB dependent receptor KP728_18065 PF07660 Secretin and TonB N terminus short domain KP728_18065 PF07715 TonB-dependent Receptor Plug Domain KP728_18075 PF02254 TrkA-N domain KP728_18075 PF00999 Sodium/hydrogen exchanger family KP728_18080 PF00067 Cytochrome P450 KP728_18085 PF07715 TonB-dependent Receptor Plug Domain KP728_18085 PF00593 TonB dependent receptor KP728_18090 PF07715 TonB-dependent Receptor Plug Domain KP728_18090 PF00593 TonB dependent receptor KP728_18100 PF00593 TonB dependent receptor KP728_18100 PF07715 TonB-dependent Receptor Plug Domain KP728_18105 PF12848 ABC transporter KP728_18105 PF00005 ABC transporter KP728_18115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_18115 PF03466 LysR substrate binding domain KP728_18130 PF04185 Phosphoesterase family KP728_18130 PF05506 Domain of unknown function (DUF756) KP728_18140 PF07690 Major Facilitator Superfamily KP728_18155 PF02938 GAD domain KP728_18155 PF01336 OB-fold nucleic acid binding domain KP728_18155 PF00152 tRNA synthetases class II (D, K and N) KP728_18170 PF01709 Transcriptional regulator KP728_18175 PF02075 Crossover junction endodeoxyribonuclease RuvC KP728_18180 PF01330 RuvA N terminal domain KP728_18180 PF07499 RuvA, C-terminal domain KP728_18190 PF02705 K+ potassium transporter KP728_18195 PF05496 Holliday junction DNA helicase RuvB P-loop domain KP728_18195 PF05491 RuvB C-terminal winged helix domain KP728_18195 PF17864 RuvB AAA lid domain KP728_18200 PF03061 Thioesterase superfamily KP728_18205 PF01618 MotA/TolQ/ExbB proton channel family KP728_18210 PF02472 Biopolymer transport protein ExbD/TolR KP728_18220 PF04052 TolB amino-terminal domain KP728_18220 PF07676 WD40-like Beta Propeller Repeat KP728_18225 PF00691 OmpA family KP728_18235 PF04055 Radical SAM superfamily KP728_18265 PF06508 Queuosine biosynthesis protein QueC KP728_18270 PF03466 LysR substrate binding domain KP728_18270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_18285 PF00672 HAMP domain KP728_18285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_18285 PF02203 Tar ligand binding domain homologue KP728_18295 PF00849 RNA pseudouridylate synthase KP728_18295 PF01479 S4 domain KP728_18315 PF00271 Helicase conserved C-terminal domain KP728_18315 PF00570 HRDC domain KP728_18315 PF16124 RecQ zinc-binding KP728_18315 PF09382 RQC domain KP728_18315 PF00270 DEAD/DEAH box helicase KP728_18320 PF00210 Ferritin-like domain KP728_18325 PF00270 DEAD/DEAH box helicase KP728_18325 PF11898 Domain of unknown function (DUF3418) KP728_18325 PF04408 Helicase associated domain (HA2) KP728_18325 PF00271 Helicase conserved C-terminal domain KP728_18325 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KP728_18340 PF02685 Glucokinase KP728_18355 PF04055 Radical SAM superfamily KP728_18355 PF13186 Iron-sulfur cluster-binding domain KP728_18360 PF05402 Coenzyme PQQ synthesis protein D (PqqD) KP728_18365 PF03070 TENA/THI-4/PQQC family KP728_18370 PF12706 Beta-lactamase superfamily domain KP728_18375 PF08042 PqqA family KP728_18380 PF13291 ACT domain KP728_18380 PF02824 TGS domain KP728_18380 PF04607 Region found in RelA / SpoT proteins KP728_18390 PF00535 Glycosyl transferase family 2 KP728_18395 PF00912 Transglycosylase KP728_18395 PF00905 Penicillin binding protein transpeptidase domain KP728_18395 PF14814 Bifunctional transglycosylase second domain KP728_18405 PF13307 Helicase C-terminal domain KP728_18405 PF04851 Type III restriction enzyme, res subunit KP728_18410 PF00814 Glycoprotease family KP728_18415 PF03747 ADP-ribosylglycohydrolase KP728_18425 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain KP728_18425 PF02951 Prokaryotic glutathione synthetase, N-terminal domain KP728_18430 PF00072 Response regulator receiver domain KP728_18435 PF00072 Response regulator receiver domain KP728_18440 PF01584 CheW-like domain KP728_18445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_18445 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term KP728_18450 PF01584 CheW-like domain KP728_18450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_18450 PF01627 Hpt domain KP728_18450 PF02895 Signal transducing histidine kinase, homodimeric domain KP728_18450 PF00072 Response regulator receiver domain KP728_18465 PF13302 Acetyltransferase (GNAT) domain KP728_18475 PF08281 Sigma-70, region 4 KP728_18475 PF04542 Sigma-70 region 2 KP728_18485 PF01112 Asparaginase KP728_18490 PF03932 CutC family KP728_18520 PF18766 SWI2/SNF2 ATPase KP728_18520 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KP728_18520 PF11867 Domain of unknown function (DUF3387) KP728_18540 PF12161 HsdM N-terminal domain KP728_18540 PF02384 N-6 DNA Methylase KP728_18575 PF00202 Aminotransferase class-III KP728_18610 PF01301 Glycosyl hydrolases family 35 KP728_18615 PF17678 Glycosyl hydrolase family 92 N-terminal domain KP728_18615 PF07971 Glycosyl hydrolase family 92 KP728_18625 PF11975 Family 4 glycosyl hydrolase C-terminal domain KP728_18625 PF02056 Family 4 glycosyl hydrolase KP728_18635 PF13520 Amino acid permease KP728_18640 PF01301 Glycosyl hydrolases family 35 KP728_18650 PF14310 Fibronectin type III-like domain KP728_18650 PF00933 Glycosyl hydrolase family 3 N terminal domain KP728_18650 PF07691 PA14 domain KP728_18650 PF01915 Glycosyl hydrolase family 3 C-terminal domain KP728_18660 PF00728 Glycosyl hydrolase family 20, catalytic domain KP728_18660 PF02838 Glycosyl hydrolase family 20, domain 2 KP728_18660 PF07691 PA14 domain KP728_18665 PF00704 Glycosyl hydrolases family 18 KP728_18665 PF01476 LysM domain KP728_18680 PF02685 Glucokinase KP728_18685 PF04452 RNA methyltransferase KP728_18690 PF00202 Aminotransferase class-III KP728_18695 PF00293 NUDIX domain KP728_18700 PF00459 Inositol monophosphatase family KP728_18705 PF03819 MazG nucleotide pyrophosphohydrolase domain KP728_18710 PF02694 Uncharacterised BCR, YnfA/UPF0060 family KP728_18715 PF16200 C-terminal region of band_7 KP728_18715 PF01145 SPFH domain / Band 7 family KP728_18725 PF08669 Glycine cleavage T-protein C-terminal barrel domain KP728_18725 PF01571 Aminomethyltransferase folate-binding domain KP728_18730 PF01597 Glycine cleavage H-protein KP728_18760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KP728_18760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KP728_18760 PF09317 Domain of unknown function (DUF1974) KP728_18770 PF00440 Bacterial regulatory proteins, tetR family KP728_18775 PF07715 TonB-dependent Receptor Plug Domain KP728_18775 PF00593 TonB dependent receptor KP728_18785 PF01430 Hsp33 protein KP728_18790 PF00912 Transglycosylase KP728_18795 PF00535 Glycosyl transferase family 2 KP728_18800 PF00571 CBS domain KP728_18800 PF00478 IMP dehydrogenase / GMP reductase domain KP728_18805 PF05170 AsmA family KP728_18810 PF03006 Haemolysin-III related KP728_18815 PF00009 Elongation factor Tu GTP binding domain KP728_18815 PF16658 Class II release factor RF3, C-terminal domain KP728_18820 PF01551 Peptidase family M23 KP728_18820 PF08525 Opacity-associated protein A N-terminal motif KP728_18820 PF01476 LysM domain KP728_18825 PF00561 alpha/beta hydrolase fold KP728_18830 PF01053 Cys/Met metabolism PLP-dependent enzyme KP728_18835 PF00696 Amino acid kinase family KP728_18835 PF03447 Homoserine dehydrogenase, NAD binding domain KP728_18835 PF00742 Homoserine dehydrogenase KP728_18840 PF12697 Alpha/beta hydrolase family KP728_18845 PF03313 Serine dehydratase alpha chain KP728_18845 PF03315 Serine dehydratase beta chain KP728_18860 PF01292 Prokaryotic cytochrome b561 KP728_18865 PF04264 YceI-like domain KP728_18870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_18870 PF00512 His Kinase A (phospho-acceptor) domain KP728_18870 PF01627 Hpt domain KP728_18870 PF00072 Response regulator receiver domain KP728_18875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_18875 PF00512 His Kinase A (phospho-acceptor) domain KP728_18875 PF01627 Hpt domain KP728_18875 PF00072 Response regulator receiver domain KP728_18875 PF17149 Periplasmic sensor domain found in signal transduction proteins KP728_18875 PF00672 HAMP domain KP728_18880 PF07690 Major Facilitator Superfamily KP728_18885 PF01208 Uroporphyrinogen decarboxylase (URO-D) KP728_18895 PF01761 3-dehydroquinate synthase KP728_18900 PF01202 Shikimate kinase KP728_18905 PF01243 Pyridoxamine 5'-phosphate oxidase KP728_18905 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region KP728_18910 PF00583 Acetyltransferase (GNAT) family KP728_18920 PF04012 PspA/IM30 family KP728_18945 PF03738 Glutathionylspermidine synthase preATP-grasp KP728_18950 PF07690 Major Facilitator Superfamily KP728_18955 PF09278 MerR, DNA binding KP728_18955 PF00376 MerR family regulatory protein KP728_18970 PF12706 Beta-lactamase superfamily domain KP728_18990 PF00324 Amino acid permease KP728_18995 PF00196 Bacterial regulatory proteins, luxR family KP728_19000 PF00561 alpha/beta hydrolase fold KP728_19005 PF00544 Pectate lyase KP728_19010 PF00324 Amino acid permease KP728_19025 PF01654 Cytochrome bd terminal oxidase subunit I KP728_19030 PF02322 Cytochrome bd terminal oxidase subunit II KP728_19035 PF00756 Putative esterase KP728_19040 PF03448 MgtE intracellular N domain KP728_19040 PF01769 Divalent cation transporter KP728_19040 PF00571 CBS domain KP728_19045 PF00391 PEP-utilising enzyme, mobile domain KP728_19045 PF05524 PEP-utilising enzyme, N-terminal KP728_19045 PF02896 PEP-utilising enzyme, TIM barrel domain KP728_19050 PF00381 PTS HPr component phosphorylation site KP728_19060 PF03668 P-loop ATPase protein family KP728_19065 PF02603 HPr Serine kinase N terminus KP728_19065 PF07475 HPr Serine kinase C-terminal domain KP728_19070 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KP728_19075 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KP728_19080 PF04963 Sigma-54 factor, core binding domain KP728_19080 PF00309 Sigma-54 factor, Activator interacting domain (AID) KP728_19080 PF04552 Sigma-54, DNA binding domain KP728_19085 PF00005 ABC transporter KP728_19090 PF03968 OstA-like protein KP728_19105 PF01380 SIS domain KP728_19105 PF00571 CBS domain KP728_19110 PF01722 BolA-like protein KP728_19115 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KP728_19135 PF00551 Formyl transferase KP728_19145 PF02769 AIR synthase related protein, C-terminal domain KP728_19145 PF00586 AIR synthase related protein, N-terminal domain KP728_19155 PF01594 AI-2E family transporter KP728_19160 PF00308 Bacterial dnaA protein KP728_19165 PF00483 Nucleotidyl transferase KP728_19170 PF01636 Phosphotransferase enzyme family KP728_19180 PF07687 Peptidase dimerisation domain KP728_19180 PF01546 Peptidase family M20/M25/M40 KP728_19200 PF00175 Oxidoreductase NAD-binding domain KP728_19200 PF00667 FAD binding domain KP728_19200 PF00258 Flavodoxin KP728_19205 PF02424 ApbE family KP728_19230 PF13640 2OG-Fe(II) oxygenase superfamily KP728_19230 PF18331 PKHD-type hydroxylase C-terminal domain KP728_19235 PF00593 TonB dependent receptor KP728_19235 PF07715 TonB-dependent Receptor Plug Domain KP728_19240 PF00355 Rieske [2Fe-2S] domain KP728_19250 PF00266 Aminotransferase class-V KP728_19255 PF01458 Uncharacterized protein family (UPF0051) KP728_19260 PF00005 ABC transporter KP728_19265 PF01458 Uncharacterized protein family (UPF0051) KP728_19270 PF02082 Transcriptional regulator KP728_19280 PF01965 DJ-1/PfpI family KP728_19300 PF01551 Peptidase family M23 KP728_19300 PF01476 LysM domain KP728_19310 PF03807 NADP oxidoreductase coenzyme F420-dependent KP728_19310 PF14748 Pyrroline-5-carboxylate reductase dimerisation KP728_19315 PF01168 Alanine racemase, N-terminal domain KP728_19320 PF00437 Type II/IV secretion system protein KP728_19325 PF00437 Type II/IV secretion system protein KP728_19335 PF03352 Methyladenine glycosylase KP728_19335 PF00958 GMP synthase C terminal domain KP728_19335 PF00117 Glutamine amidotransferase class-I KP728_19335 PF13673 Acetyltransferase (GNAT) domain KP728_19335 PF13302 Acetyltransferase (GNAT) domain KP728_19340 PF02622 Uncharacterized ACR, COG1678 KP728_19345 PF03652 Holliday junction resolvase KP728_19350 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KP728_19350 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KP728_19355 PF02566 OsmC-like protein KP728_19365 PF02567 Phenazine biosynthesis-like protein KP728_19370 PF02567 Phenazine biosynthesis-like protein KP728_19375 PF00696 Amino acid kinase family KP728_19375 PF01842 ACT domain KP728_19390 PF08245 Mur ligase middle domain KP728_19400 PF00348 Polyprenyl synthetase KP728_19405 PF00436 Single-strand binding protein family KP728_19410 PF00990 Diguanylate cyclase, GGDEF domain KP728_19410 PF01590 GAF domain KP728_19410 PF00563 EAL domain KP728_19410 PF00360 Phytochrome region KP728_19415 PF14765 Polyketide synthase dehydratase KP728_19415 PF00698 Acyl transferase domain KP728_19415 PF08240 Alcohol dehydrogenase GroES-like domain KP728_19415 PF02801 Beta-ketoacyl synthase, C-terminal domain KP728_19415 PF00107 Zinc-binding dehydrogenase KP728_19415 PF00109 Beta-ketoacyl synthase, N-terminal domain KP728_19415 PF16197 Ketoacyl-synthetase C-terminal extension KP728_19415 PF08659 KR domain KP728_19415 PF00550 Phosphopantetheine attachment site KP728_19420 PF10518 TAT (twin-arginine translocation) pathway signal sequence KP728_19420 PF01799 [2Fe-2S] binding domain KP728_19420 PF00111 2Fe-2S iron-sulfur cluster binding domain KP728_19425 PF03450 CO dehydrogenase flavoprotein C-terminal domain KP728_19425 PF00941 FAD binding domain in molybdopterin dehydrogenase KP728_19430 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KP728_19430 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KP728_19435 PF13478 XdhC Rossmann domain KP728_19435 PF02625 XdhC and CoxI family KP728_19445 PF12804 MobA-like NTP transferase domain KP728_19470 PF13419 Haloacid dehalogenase-like hydrolase KP728_19475 PF04328 Selenoprotein, putative KP728_19480 PF02554 Carbon starvation protein CstA KP728_19480 PF13722 5TM C-terminal transporter carbon starvation CstA KP728_19485 PF02678 Pirin KP728_19485 PF05726 Pirin C-terminal cupin domain KP728_19500 PF02678 Pirin KP728_19500 PF05726 Pirin C-terminal cupin domain KP728_19505 PF04493 Endonuclease V KP728_19510 PF00300 Histidine phosphatase superfamily (branch 1) KP728_19520 PF01431 Peptidase family M13 KP728_19520 PF05649 Peptidase family M13 KP728_19525 PF13091 PLD-like domain KP728_19530 PF00072 Response regulator receiver domain KP728_19530 PF01339 CheB methylesterase KP728_19535 PF01739 CheR methyltransferase, SAM binding domain KP728_19535 PF03705 CheR methyltransferase, all-alpha domain KP728_19540 PF00563 EAL domain KP728_19540 PF00990 Diguanylate cyclase, GGDEF domain KP728_19540 PF13426 PAS domain KP728_19545 PF01584 CheW-like domain KP728_19550 PF00672 HAMP domain KP728_19550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_19555 PF02895 Signal transducing histidine kinase, homodimeric domain KP728_19555 PF01584 CheW-like domain KP728_19555 PF09078 CheY binding KP728_19555 PF01627 Hpt domain KP728_19555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_19565 PF03461 TRCF domain KP728_19565 PF02559 CarD-like/TRCF domain KP728_19565 PF00270 DEAD/DEAH box helicase KP728_19565 PF00271 Helicase conserved C-terminal domain KP728_19565 PF17757 UvrB interaction domain KP728_19575 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ KP728_19580 PF00486 Transcriptional regulatory protein, C terminal KP728_19580 PF00072 Response regulator receiver domain KP728_19585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_19585 PF00512 His Kinase A (phospho-acceptor) domain KP728_19585 PF00672 HAMP domain KP728_19600 PF06123 Inner membrane protein CreD KP728_19615 PF00795 Carbon-nitrogen hydrolase KP728_19625 PF00749 tRNA synthetases class I (E and Q), catalytic domain KP728_19630 PF01475 Ferric uptake regulator family KP728_19640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KP728_19640 PF00529 HlyD membrane-fusion protein of T1SS KP728_19645 PF00873 AcrB/AcrD/AcrF family KP728_19650 PF02321 Outer membrane efflux protein KP728_19670 PF06719 AraC-type transcriptional regulator N-terminus KP728_19670 PF12833 Helix-turn-helix domain KP728_19680 PF03466 LysR substrate binding domain KP728_19680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_19685 PF07690 Major Facilitator Superfamily KP728_19690 PF00248 Aldo/keto reductase family KP728_19700 PF01483 Proprotein convertase P-domain KP728_19700 PF00082 Subtilase family KP728_19705 PF00082 Subtilase family KP728_19715 PF13860 FlgD Ig-like domain KP728_19715 PF05922 Peptidase inhibitor I9 KP728_19715 PF00082 Subtilase family KP728_19715 PF02225 PA domain KP728_19740 PF00593 TonB dependent receptor KP728_19740 PF07715 TonB-dependent Receptor Plug Domain KP728_19755 PF00654 Voltage gated chloride channel KP728_19765 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KP728_19765 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KP728_19800 PF01494 FAD binding domain KP728_19820 PF04542 Sigma-70 region 2 KP728_19820 PF04545 Sigma-70, region 4 KP728_19820 PF04539 Sigma-70 region 3 KP728_19825 PF00270 DEAD/DEAH box helicase KP728_19825 PF00271 Helicase conserved C-terminal domain KP728_19825 PF03880 DbpA RNA binding domain KP728_19830 PF00563 EAL domain KP728_19830 PF00990 Diguanylate cyclase, GGDEF domain KP728_19830 PF08448 PAS fold KP728_19835 PF00849 RNA pseudouridylate synthase KP728_19835 PF01479 S4 domain KP728_19855 PF03737 Aldolase/RraA KP728_19860 PF00144 Beta-lactamase KP728_19865 PF00999 Sodium/hydrogen exchanger family KP728_19875 PF00005 ABC transporter KP728_19875 PF00664 ABC transporter transmembrane region KP728_19900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_19900 PF03466 LysR substrate binding domain KP728_19915 PF04070 Domain of unknown function (DUF378) KP728_19920 PF07043 Protein of unknown function (DUF1328) KP728_19940 PF00085 Thioredoxin KP728_19950 PF13603 Leucyl-tRNA synthetase, Domain 2 KP728_19950 PF00133 tRNA synthetases class I (I, L, M and V) KP728_19950 PF08264 Anticodon-binding domain of tRNA KP728_19965 PF01467 Cytidylyltransferase-like KP728_19985 PF02590 Predicted SPOUT methyltransferase KP728_19995 PF04402 Protein of unknown function (DUF541) KP728_20000 PF02545 Maf-like protein KP728_20005 PF10150 Ribonuclease E/G family KP728_20005 PF00575 S1 RNA binding domain KP728_20010 PF13502 AsmA-like C-terminal region KP728_20010 PF13116 Protein of unknown function KP728_20020 PF01523 Putative modulator of DNA gyrase KP728_20025 PF04751 Protein of unknown function (DUF615) KP728_20030 PF01523 Putative modulator of DNA gyrase KP728_20045 PF00348 Polyprenyl synthetase KP728_20050 PF02609 Exonuclease VII small subunit KP728_20055 PF01171 PP-loop family KP728_20055 PF09179 TilS substrate binding domain KP728_20055 PF11734 TilS substrate C-terminal domain KP728_20060 PF00245 Alkaline phosphatase KP728_20065 PF00375 Sodium:dicarboxylate symporter family KP728_20070 PF13649 Methyltransferase domain KP728_20080 PF00877 NlpC/P60 family KP728_20085 PF00877 NlpC/P60 family KP728_20090 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KP728_20095 PF04235 Protein of unknown function (DUF418) KP728_20100 PF01266 FAD dependent oxidoreductase KP728_20105 PF07992 Pyridine nucleotide-disulphide oxidoreductase KP728_20105 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KP728_20130 PF05649 Peptidase family M13 KP728_20130 PF01431 Peptidase family M13 KP728_20135 PF01431 Peptidase family M13 KP728_20135 PF05649 Peptidase family M13 KP728_20165 PF10609 NUBPL iron-transfer P-loop NTPase KP728_20170 PF00692 dUTPase KP728_20190 PF01738 Dienelactone hydrolase family KP728_20265 PF00082 Subtilase family KP728_20270 PF01668 SmpB protein KP728_20280 PF03658 RnfH family Ubiquitin KP728_20285 PF04355 SmpA / OmlA family KP728_20290 PF01475 Ferric uptake regulator family KP728_20295 PF02463 RecF/RecN/SMC N terminal domain KP728_20300 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding KP728_20300 PF01628 HrcA protein C terminal domain KP728_20305 PF01025 GrpE KP728_20310 PF00012 Hsp70 protein KP728_20315 PF00226 DnaJ domain KP728_20315 PF00684 DnaJ central domain KP728_20315 PF01556 DnaJ C terminal domain KP728_20320 PF08543 Phosphomethylpyrimidine kinase KP728_20325 PF01817 Chorismate mutase type II KP728_20325 PF02153 Prephenate dehydrogenase KP728_20345 PF00664 ABC transporter transmembrane region KP728_20345 PF00005 ABC transporter KP728_20345 PF03412 Peptidase C39 family KP728_20350 PF03466 LysR substrate binding domain KP728_20350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_20355 PF00005 ABC transporter KP728_20355 PF00664 ABC transporter transmembrane region KP728_20365 PF17676 LD-carboxypeptidase C-terminal domain KP728_20365 PF02016 LD-carboxypeptidase N-terminal domain KP728_20370 PF01205 Uncharacterized protein family UPF0029 KP728_20375 PF03641 Possible lysine decarboxylase KP728_20380 PF07992 Pyridine nucleotide-disulphide oxidoreductase KP728_20380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KP728_20385 PF00364 Biotin-requiring enzyme KP728_20385 PF02817 e3 binding domain KP728_20385 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KP728_20390 PF16078 2-oxoglutarate dehydrogenase N-terminus KP728_20390 PF00676 Dehydrogenase E1 component KP728_20390 PF16870 2-oxoglutarate dehydrogenase C-terminal KP728_20390 PF02779 Transketolase, pyrimidine binding domain KP728_20400 PF08007 Cupin superfamily protein KP728_20410 PF08328 Adenylosuccinate lyase C-terminal KP728_20410 PF00206 Lyase KP728_20415 PF01595 Cyclin M transmembrane N-terminal domain KP728_20415 PF03471 Transporter associated domain KP728_20415 PF00571 CBS domain KP728_20420 PF00206 Lyase KP728_20420 PF10415 Fumarase C C-terminus KP728_20445 PF00005 ABC transporter KP728_20450 PF00392 Bacterial regulatory proteins, gntR family KP728_20460 PF00255 Glutathione peroxidase KP728_20465 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KP728_20465 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KP728_20470 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KP728_20470 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KP728_20470 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KP728_20475 PF04102 SlyX KP728_20490 PF00356 Bacterial regulatory proteins, lacI family KP728_20495 PF07690 Major Facilitator Superfamily KP728_20500 PF00294 pfkB family carbohydrate kinase KP728_20510 PF02310 B12 binding domain KP728_20510 PF02574 Homocysteine S-methyltransferase KP728_20510 PF02965 Vitamin B12 dependent methionine synthase, activation domain KP728_20510 PF00809 Pterin binding enzyme KP728_20510 PF02607 B12 binding domain KP728_20515 PF02574 Homocysteine S-methyltransferase KP728_20515 PF00809 Pterin binding enzyme KP728_20520 PF01209 ubiE/COQ5 methyltransferase family KP728_20525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KP728_20525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KP728_20525 PF02770 Acyl-CoA dehydrogenase, middle domain KP728_20540 PF17876 Cold shock domain KP728_20540 PF08461 Ribonuclease R winged-helix domain KP728_20540 PF08206 Ribonuclease B OB domain KP728_20540 PF00773 RNB domain KP728_20540 PF00575 S1 RNA binding domain KP728_20550 PF08032 RNA 2'-O ribose methyltransferase substrate binding KP728_20550 PF00588 SpoU rRNA Methylase family KP728_20560 PF00990 Diguanylate cyclase, GGDEF domain KP728_20565 PF00929 Exonuclease KP728_20575 PF01895 PhoU domain KP728_20580 PF00005 ABC transporter KP728_20585 PF00528 Binding-protein-dependent transport system inner membrane component KP728_20590 PF00528 Binding-protein-dependent transport system inner membrane component KP728_20595 PF12849 PBP superfamily domain KP728_20600 PF12849 PBP superfamily domain KP728_20615 PF00484 Carbonic anhydrase KP728_20620 PF01740 STAS domain KP728_20620 PF00916 Sulfate permease family KP728_20625 PF00730 HhH-GPD superfamily base excision DNA repair protein KP728_20625 PF00633 Helix-hairpin-helix motif KP728_20625 PF10576 Iron-sulfur binding domain of endonuclease III KP728_20635 PF00378 Enoyl-CoA hydratase/isomerase KP728_20640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KP728_20640 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KP728_20645 PF00293 NUDIX domain KP728_20650 PF00581 Rhodanese-like domain KP728_20685 PF00005 ABC transporter KP728_20685 PF16326 ABC transporter C-terminal domain KP728_20685 PF12848 ABC transporter KP728_20695 PF02926 THUMP domain KP728_20695 PF01170 Putative RNA methylase family UPF0020 KP728_20695 PF10672 S-adenosylmethionine-dependent methyltransferase KP728_20700 PF01513 ATP-NAD kinase KP728_20725 PF08411 Exonuclease C-terminal KP728_20725 PF00929 Exonuclease KP728_20730 PF01494 FAD binding domain KP728_20735 PF00266 Aminotransferase class-V KP728_20745 PF06052 3-hydroxyanthranilic acid dioxygenase KP728_20750 PF00484 Carbonic anhydrase KP728_20795 PF04299 Putative FMN-binding domain KP728_20815 PF00152 tRNA synthetases class II (D, K and N) KP728_20815 PF01336 OB-fold nucleic acid binding domain KP728_20820 PF01521 Iron-sulphur cluster biosynthesis KP728_20825 PF01250 Ribosomal protein S6 KP728_20830 PF01084 Ribosomal protein S18 KP728_20835 PF03948 Ribosomal protein L9, C-terminal domain KP728_20835 PF01281 Ribosomal protein L9, N-terminal domain KP728_20840 PF02463 RecF/RecN/SMC N terminal domain KP728_20845 PF04354 ZipA, C-terminal FtsZ-binding domain KP728_20855 PF00155 Aminotransferase class I and II KP728_20860 PF00533 BRCA1 C Terminus (BRCT) domain KP728_20860 PF01653 NAD-dependent DNA ligase adenylation domain KP728_20860 PF03120 NAD-dependent DNA ligase OB-fold domain KP728_20860 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KP728_20860 PF12826 Helix-hairpin-helix motif KP728_20865 PF00152 tRNA synthetases class II (D, K and N) KP728_20875 PF01008 Initiation factor 2 subunit family KP728_20880 PF00521 DNA gyrase/topoisomerase IV, subunit A KP728_20880 PF03989 DNA gyrase C-terminal domain, beta-propeller KP728_20885 PF13360 PQQ-like domain KP728_20900 PF01175 Urocanase Rossmann-like domain KP728_20900 PF17392 Urocanase C-terminal domain KP728_20900 PF17391 Urocanase N-terminal domain KP728_20910 PF00221 Aromatic amino acid lyase KP728_20915 PF07969 Amidohydrolase family KP728_20925 PF00392 Bacterial regulatory proteins, gntR family KP728_20925 PF07702 UTRA domain KP728_20950 PF01794 Ferric reductase like transmembrane component KP728_20955 PF00174 Oxidoreductase molybdopterin binding domain KP728_20960 PF00266 Aminotransferase class-V KP728_20965 PF01817 Chorismate mutase type II KP728_20965 PF01842 ACT domain KP728_20965 PF00800 Prephenate dehydratase KP728_20970 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KP728_20980 PF03544 Gram-negative bacterial TonB protein C-terminal KP728_20985 PF02403 Seryl-tRNA synthetase N-terminal domain KP728_20985 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KP728_20990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_20990 PF03466 LysR substrate binding domain KP728_21020 PF04002 RadC-like JAB domain KP728_21050 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA KP728_21055 PF00145 C-5 cytosine-specific DNA methylase KP728_21060 PF03852 DNA mismatch endonuclease Vsr KP728_21070 PF07728 AAA domain (dynein-related subfamily) KP728_21070 PF12102 Domain of unknown function (DUF3578) KP728_21125 PF02534 Type IV secretory system Conjugative DNA transfer KP728_21180 PF01609 Transposase DDE domain KP728_21180 PF13006 Insertion element 4 transposase N-terminal KP728_21180 PF01609 Transposase DDE domain KP728_21180 PF13006 Insertion element 4 transposase N-terminal KP728_21195 PF00672 HAMP domain KP728_21195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_21195 PF02203 Tar ligand binding domain homologue KP728_21215 PF02627 Carboxymuconolactone decarboxylase family KP728_21220 PF00155 Aminotransferase class I and II KP728_21220 PF00392 Bacterial regulatory proteins, gntR family KP728_21230 PF02203 Tar ligand binding domain homologue KP728_21230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_21230 PF00672 HAMP domain KP728_21235 PF01494 FAD binding domain KP728_21245 PF00072 Response regulator receiver domain KP728_21245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_21245 PF00512 His Kinase A (phospho-acceptor) domain KP728_21245 PF08448 PAS fold KP728_21245 PF13188 PAS domain KP728_21250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_21250 PF13426 PAS domain KP728_21250 PF00072 Response regulator receiver domain KP728_21255 PF06745 KaiC KP728_21260 PF13426 PAS domain KP728_21260 PF00072 Response regulator receiver domain KP728_21260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_21270 PF03918 Cytochrome C biogenesis protein KP728_21275 PF08534 Redoxin KP728_21280 PF01578 Cytochrome C assembly protein KP728_21280 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal KP728_21285 PF03100 CcmE KP728_21295 PF01578 Cytochrome C assembly protein KP728_21300 PF00082 Subtilase family KP728_21310 PF04542 Sigma-70 region 2 KP728_21310 PF08281 Sigma-70, region 4 KP728_21320 PF00034 Cytochrome c KP728_21335 PF05523 WxcM-like, C-terminal KP728_21355 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KP728_21360 PF01943 Polysaccharide biosynthesis protein KP728_21365 PF00535 Glycosyl transferase family 2 KP728_21395 PF00534 Glycosyl transferases group 1 KP728_21395 PF13439 Glycosyltransferase Family 4 KP728_21400 PF00534 Glycosyl transferases group 1 KP728_21400 PF13579 Glycosyl transferase 4-like domain KP728_21420 PF00005 ABC transporter KP728_21425 PF00005 ABC transporter KP728_21425 PF00664 ABC transporter transmembrane region KP728_21430 PF07690 Major Facilitator Superfamily KP728_21435 PF00296 Luciferase-like monooxygenase KP728_21450 PF00571 CBS domain KP728_21450 PF03471 Transporter associated domain KP728_21450 PF01595 Cyclin M transmembrane N-terminal domain KP728_21460 PF01384 Phosphate transporter family KP728_21475 PF00204 DNA gyrase B KP728_21475 PF00986 DNA gyrase B subunit, carboxyl terminus KP728_21475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_21475 PF01751 Toprim domain KP728_21485 PF06418 CTP synthase N-terminus KP728_21485 PF00117 Glutamine amidotransferase class-I KP728_21490 PF00793 DAHP synthetase I family KP728_21500 PF03952 Enolase, N-terminal domain KP728_21500 PF00113 Enolase, C-terminal TIM barrel domain KP728_21505 PF04977 Septum formation initiator KP728_21510 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KP728_21515 PF02542 YgbB family KP728_21520 PF01142 tRNA pseudouridine synthase D (TruD) KP728_21525 PF01713 Smr domain KP728_21530 PF01975 Survival protein SurE KP728_21540 PF09335 SNARE associated Golgi protein KP728_21545 PF01476 LysM domain KP728_21545 PF01551 Peptidase family M23 KP728_21555 PF01985 CRS1 / YhbY (CRM) domain KP728_21560 PF01728 FtsJ-like methyltransferase KP728_21565 PF00004 ATPase family associated with various cellular activities (AAA) KP728_21565 PF17862 AAA+ lid domain KP728_21565 PF06480 FtsH Extracellular KP728_21565 PF01434 Peptidase family M41 KP728_21570 PF00809 Pterin binding enzyme KP728_21580 PF17209 Hfq protein KP728_21585 PF16360 GTP-binding GTPase Middle Region KP728_21585 PF13167 GTP-binding GTPase N-terminal KP728_21585 PF01926 50S ribosome-binding GTPase KP728_21590 PF02464 Competence-damaged protein KP728_21595 PF07715 TonB-dependent Receptor Plug Domain KP728_21595 PF00593 TonB dependent receptor KP728_21600 PF03109 ABC1 family KP728_21605 PF01726 LexA DNA binding domain KP728_21605 PF00717 Peptidase S24-like KP728_21610 PF00154 recA bacterial DNA recombination protein KP728_21615 PF02631 RecX family KP728_21620 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KP728_21620 PF01411 tRNA synthetases class II (A) KP728_21620 PF02272 DHHA1 domain KP728_21625 PF02599 Global regulator protein family KP728_21640 PF13006 Insertion element 4 transposase N-terminal KP728_21640 PF01609 Transposase DDE domain KP728_21640 PF13006 Insertion element 4 transposase N-terminal KP728_21640 PF01609 Transposase DDE domain KP728_21645 PF02678 Pirin KP728_21645 PF17954 Quercetinase C-terminal cupin domain KP728_21650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_21650 PF03466 LysR substrate binding domain KP728_21675 PF02581 Thiamine monophosphate synthase KP728_21675 PF08543 Phosphomethylpyrimidine kinase KP728_21690 PF13638 PIN domain KP728_21690 PF02562 PhoH-like protein KP728_21695 PF00578 AhpC/TSA family KP728_21710 PF00701 Dihydrodipicolinate synthetase family KP728_21720 PF11953 Domain of unknown function (DUF3470) KP728_21720 PF00037 4Fe-4S binding domain KP728_21725 PF05035 2-keto-3-deoxy-galactonokinase KP728_21730 PF08450 SMP-30/Gluconolactonase/LRE-like region KP728_21735 PF13378 Enolase C-terminal domain-like KP728_21735 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KP728_21740 PF01081 KDPG and KHG aldolase KP728_21745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KP728_21745 PF03466 LysR substrate binding domain KP728_21760 PF00942 Cellulose binding domain KP728_21760 PF03442 Carbohydrate binding domain X2 KP728_21775 PF17137 Domain of unknown function (DUF5110) KP728_21775 PF16338 Domain of unknown function (DUF4968) KP728_21775 PF01055 Glycosyl hydrolases family 31 KP728_21785 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KP728_21785 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KP728_21795 PF00083 Sugar (and other) transporter KP728_21810 PF01520 N-acetylmuramoyl-L-alanine amidase KP728_21815 PF02649 Type I GTP cyclohydrolase folE2 KP728_21825 PF01743 Poly A polymerase head domain KP728_21825 PF12626 Polymerase A arginine-rich C-terminus KP728_21825 PF12627 Probable RNA and SrmB- binding site of polymerase A KP728_21830 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KP728_21835 PF02548 Ketopantoate hydroxymethyltransferase KP728_21840 PF02569 Pantoate-beta-alanine ligase KP728_21845 PF02261 Aspartate decarboxylase KP728_21850 PF00342 Phosphoglucose isomerase KP728_21870 PF01915 Glycosyl hydrolase family 3 C-terminal domain KP728_21870 PF00933 Glycosyl hydrolase family 3 N terminal domain KP728_21870 PF14310 Fibronectin type III-like domain KP728_21875 PF00474 Sodium:solute symporter family KP728_21880 PF00563 EAL domain KP728_21880 PF00990 Diguanylate cyclase, GGDEF domain KP728_21880 PF00360 Phytochrome region KP728_21880 PF01590 GAF domain KP728_21885 PF02013 Cellulose or protein binding domain KP728_21885 PF00150 Cellulase (glycosyl hydrolase family 5) KP728_21890 PF00072 Response regulator receiver domain KP728_21900 PF04551 GcpE protein KP728_21905 PF01569 PAP2 superfamily KP728_21910 PF07690 Major Facilitator Superfamily KP728_21915 PF01177 Asp/Glu/Hydantoin racemase KP728_21925 PF01565 FAD binding domain KP728_21925 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KP728_21930 PF01180 Dihydroorotate dehydrogenase KP728_21945 PF00171 Aldehyde dehydrogenase family KP728_21960 PF00535 Glycosyl transferase family 2 KP728_21965 PF14883 Hypothetical glycosyl hydrolase family 13 KP728_21965 PF01522 Polysaccharide deacetylase KP728_21975 PF08479 POTRA domain, ShlB-type KP728_21975 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB KP728_21975 PF17287 POTRA domain KP728_22015 PF00696 Amino acid kinase family KP728_22015 PF01842 ACT domain KP728_22015 PF13840 ACT domain KP728_22015 PF00742 Homoserine dehydrogenase KP728_22015 PF03447 Homoserine dehydrogenase, NAD binding domain KP728_22020 PF08544 GHMP kinases C terminal KP728_22020 PF00288 GHMP kinases N terminal domain KP728_22030 PF00291 Pyridoxal-phosphate dependent enzyme KP728_22030 PF14821 Threonine synthase N terminus KP728_22040 PF00027 Cyclic nucleotide-binding domain KP728_22040 PF13545 Crp-like helix-turn-helix domain KP728_22045 PF03129 Anticodon binding domain KP728_22045 PF13393 Histidyl-tRNA synthetase KP728_22055 PF01634 ATP phosphoribosyltransferase KP728_22055 PF08029 HisG, C-terminal domain KP728_22060 PF00815 Histidinol dehydrogenase KP728_22065 PF00155 Aminotransferase class I and II KP728_22070 PF00475 Imidazoleglycerol-phosphate dehydratase KP728_22075 PF00117 Glutamine amidotransferase class-I KP728_22080 PF00977 Histidine biosynthesis protein KP728_22085 PF00977 Histidine biosynthesis protein KP728_22090 PF01502 Phosphoribosyl-AMP cyclohydrolase KP728_22090 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase KP728_22110 PF03079 ARD/ARD' family KP728_22115 PF00596 Class II Aldolase and Adducin N-terminal domain KP728_22120 PF13520 Amino acid permease KP728_22125 PF13520 Amino acid permease KP728_22135 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KP728_22135 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KP728_22140 PF02913 FAD linked oxidases, C-terminal domain KP728_22140 PF01565 FAD binding domain KP728_22160 PF01132 Elongation factor P (EF-P) OB domain KP728_22160 PF08207 Elongation factor P (EF-P) KOW-like domain KP728_22160 PF09285 Elongation factor P, C-terminal KP728_22165 PF00106 short chain dehydrogenase KP728_22170 PF00682 HMGL-like KP728_22175 PF00378 Enoyl-CoA hydratase/isomerase KP728_22185 PF07664 Ferrous iron transport protein B C terminus KP728_22185 PF02421 Ferrous iron transport protein B KP728_22185 PF07670 Nucleoside recognition KP728_22200 PF00155 Aminotransferase class I and II KP728_22205 PF03475 3-alpha domain KP728_22205 PF03473 MOSC domain KP728_22210 PF00691 OmpA family KP728_22210 PF13677 Membrane MotB of proton-channel complex MotA/MotB KP728_22215 PF01113 Dihydrodipicolinate reductase, N-terminus KP728_22215 PF05173 Dihydrodipicolinate reductase, C-terminus KP728_22220 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KP728_22220 PF00117 Glutamine amidotransferase class-I KP728_22230 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KP728_22230 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KP728_22230 PF02142 MGS-like domain KP728_22235 PF01272 Transcription elongation factor, GreA/GreB, C-term KP728_22235 PF03449 Transcription elongation factor, N-terminal KP728_22245 PF01368 DHH family KP728_22245 PF02272 DHHA1 domain KP728_22245 PF17768 RecJ OB domain KP728_22260 PF04397 LytTr DNA-binding domain KP728_22260 PF00072 Response regulator receiver domain KP728_22270 PF01336 OB-fold nucleic acid binding domain KP728_22270 PF00152 tRNA synthetases class II (D, K and N) KP728_22275 PF00072 Response regulator receiver domain KP728_22280 PF01627 Hpt domain KP728_22280 PF00072 Response regulator receiver domain KP728_22280 PF00512 His Kinase A (phospho-acceptor) domain KP728_22280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KP728_22285 PF00378 Enoyl-CoA hydratase/isomerase KP728_22295 PF13193 AMP-binding enzyme C-terminal domain KP728_22295 PF00501 AMP-binding enzyme KP728_22305 PF00694 Aconitase C-terminal domain KP728_22305 PF00330 Aconitase family (aconitate hydratase) KP728_22320 PF11791 Aconitate B N-terminal domain KP728_22320 PF06434 Aconitate hydratase 2 N-terminus KP728_22320 PF00330 Aconitase family (aconitate hydratase) KP728_22325 PF00561 alpha/beta hydrolase fold KP728_22330 PF00990 Diguanylate cyclase, GGDEF domain KP728_22330 PF00563 EAL domain KP728_22330 PF03707 Bacterial signalling protein N terminal repeat KP728_22335 PF01339 CheB methylesterase KP728_22335 PF00072 Response regulator receiver domain KP728_22340 PF03975 CheD chemotactic sensory transduction KP728_22345 PF03705 CheR methyltransferase, all-alpha domain KP728_22345 PF01739 CheR methyltransferase, SAM binding domain KP728_22350 PF01609 Transposase DDE domain KP728_22350 PF13006 Insertion element 4 transposase N-terminal KP728_22350 PF13006 Insertion element 4 transposase N-terminal KP728_22350 PF01609 Transposase DDE domain KP728_22355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_22355 PF00672 HAMP domain KP728_22355 PF02203 Tar ligand binding domain homologue KP728_22365 PF01584 CheW-like domain KP728_22370 PF07317 Flagellar regulator YcgR KP728_22370 PF07238 PilZ domain KP728_22380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_22380 PF02203 Tar ligand binding domain homologue KP728_22380 PF00672 HAMP domain KP728_22385 PF00672 HAMP domain KP728_22385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_22385 PF02203 Tar ligand binding domain homologue KP728_22390 PF00672 HAMP domain KP728_22390 PF02203 Tar ligand binding domain homologue KP728_22390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_22395 PF02203 Tar ligand binding domain homologue KP728_22395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_22395 PF00672 HAMP domain KP728_22405 PF00672 HAMP domain KP728_22405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_22405 PF02203 Tar ligand binding domain homologue KP728_22410 PF02203 Tar ligand binding domain homologue KP728_22410 PF00672 HAMP domain KP728_22410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_22415 PF08269 Cache domain KP728_22415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KP728_22415 PF08269 Cache domain KP728_22415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain