locus-tag class description Xcom_00005 PF00308 Bacterial dnaA protein Xcom_00005 PF08299 Bacterial dnaA protein helix-turn-helix Xcom_00005 PF11638 DnaA N-terminal domain Xcom_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain Xcom_00010 PF02767 DNA polymerase III beta subunit, central domain Xcom_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain Xcom_00015 PF02463 RecF/RecN/SMC N terminal domain Xcom_00020 PF00986 DNA gyrase B subunit, carboxyl terminus Xcom_00020 PF18053 DNA gyrase B subunit insert domain Xcom_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_00020 PF01751 Toprim domain Xcom_00020 PF00204 DNA gyrase B Xcom_00030 PF01435 Peptidase family M48 Xcom_00045 PF01618 MotA/TolQ/ExbB proton channel family Xcom_00050 PF02472 Biopolymer transport protein ExbD/TolR Xcom_00055 PF02472 Biopolymer transport protein ExbD/TolR Xcom_00060 PF02472 Biopolymer transport protein ExbD/TolR Xcom_00070 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Xcom_00080 PF13396 Phospholipase_D-nuclease N-terminal Xcom_00080 PF13091 PLD-like domain Xcom_00095 PF04055 Radical SAM superfamily Xcom_00105 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Xcom_00120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Xcom_00120 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Xcom_00125 PF13180 PDZ domain Xcom_00125 PF03572 Peptidase family S41 Xcom_00130 PF01551 Peptidase family M23 Xcom_00140 PF04389 Peptidase family M28 Xcom_00150 PF00150 Cellulase (glycosyl hydrolase family 5) Xcom_00155 PF00150 Cellulase (glycosyl hydrolase family 5) Xcom_00160 PF00150 Cellulase (glycosyl hydrolase family 5) Xcom_00190 PF07992 Pyridine nucleotide-disulphide oxidoreductase Xcom_00190 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Xcom_00195 PF01493 GXGXG motif Xcom_00195 PF00310 Glutamine amidotransferases class-II Xcom_00195 PF01645 Conserved region in glutamate synthase Xcom_00195 PF04898 Glutamate synthase central domain Xcom_00215 PF01804 Penicillin amidase Xcom_00225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_00225 PF03466 LysR substrate binding domain Xcom_00285 PF00270 DEAD/DEAH box helicase Xcom_00285 PF00271 Helicase conserved C-terminal domain Xcom_00285 PF09369 Domain of unknown function (DUF1998) Xcom_00290 PF03006 Haemolysin-III related Xcom_00310 PF00106 short chain dehydrogenase Xcom_00335 PF05532 CsbD-like Xcom_00355 PF01447 Thermolysin metallopeptidase, catalytic domain Xcom_00355 PF02868 Thermolysin metallopeptidase, alpha-helical domain Xcom_00355 PF16485 Protealysin propeptide Xcom_00365 PF00293 NUDIX domain Xcom_00365 PF13344 Haloacid dehalogenase-like hydrolase Xcom_00380 PF00085 Thioredoxin Xcom_00390 PF00083 Sugar (and other) transporter Xcom_00390 PF08946 Osmosensory transporter coiled coil Xcom_00430 PF17863 AAA lid domain Xcom_00430 PF07726 ATPase family associated with various cellular activities (AAA) Xcom_00480 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Xcom_00485 PF00155 Aminotransferase class I and II Xcom_00490 PF00593 TonB dependent receptor Xcom_00490 PF07715 TonB-dependent Receptor Plug Domain Xcom_00510 PF00171 Aldehyde dehydrogenase family Xcom_00530 PF02735 Ku70/Ku80 beta-barrel domain Xcom_00535 PF01070 FMN-dependent dehydrogenase Xcom_00550 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family Xcom_00555 PF07730 Histidine kinase Xcom_00560 PF00196 Bacterial regulatory proteins, luxR family Xcom_00560 PF00072 Response regulator receiver domain Xcom_00580 PF18500 CadC C-terminal domain 1 Xcom_00580 PF00486 Transcriptional regulatory protein, C terminal Xcom_00585 PF07055 Enoyl reductase FAD binding domain Xcom_00585 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Xcom_00585 PF12241 Trans-2-enoyl-CoA reductase catalytic region Xcom_00595 PF00294 pfkB family carbohydrate kinase Xcom_00640 PF11896 Domain of unknown function (DUF3416) Xcom_00640 PF00128 Alpha amylase, catalytic domain Xcom_00645 PF16657 Maltogenic Amylase, C-terminal domain Xcom_00645 PF00128 Alpha amylase, catalytic domain Xcom_00650 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Xcom_00650 PF02806 Alpha amylase, C-terminal all-beta domain Xcom_00650 PF00128 Alpha amylase, catalytic domain Xcom_00660 PF00248 Aldo/keto reductase family Xcom_00665 PF00135 Carboxylesterase family Xcom_00670 PF07859 alpha/beta hydrolase fold Xcom_00670 PF13472 GDSL-like Lipase/Acylhydrolase family Xcom_00680 PF03480 Bacterial extracellular solute-binding protein, family 7 Xcom_00690 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Xcom_00695 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain Xcom_00695 PF04616 Glycosyl hydrolases family 43 Xcom_00700 PF00356 Bacterial regulatory proteins, lacI family Xcom_00705 PF04962 KduI/IolB family Xcom_00720 PF00657 GDSL-like Lipase/Acylhydrolase Xcom_00730 PF00351 Biopterin-dependent aromatic amino acid hydroxylase Xcom_00735 PF01037 Lrp/AsnC ligand binding domain Xcom_00740 PF07715 TonB-dependent Receptor Plug Domain Xcom_00740 PF07660 Secretin and TonB N terminus short domain Xcom_00740 PF00593 TonB dependent receptor Xcom_00745 PF01734 Patatin-like phospholipase Xcom_00750 PF07687 Peptidase dimerisation domain Xcom_00750 PF01546 Peptidase family M20/M25/M40 Xcom_00760 PF00005 ABC transporter Xcom_00775 PF00005 ABC transporter Xcom_00775 PF00571 CBS domain Xcom_00780 PF00528 Binding-protein-dependent transport system inner membrane component Xcom_00790 PF03781 Sulfatase-modifying factor enzyme 1 Xcom_00790 PF12867 DinB superfamily Xcom_00825 PF10609 NUBPL iron-transfer P-loop NTPase Xcom_00825 PF01883 Iron-sulfur cluster assembly protein Xcom_00840 PF13091 PLD-like domain Xcom_00845 PF03061 Thioesterase superfamily Xcom_00875 PF08240 Alcohol dehydrogenase GroES-like domain Xcom_00875 PF00107 Zinc-binding dehydrogenase Xcom_00885 PF02673 Bacitracin resistance protein BacA Xcom_00895 PF03951 Glutamine synthetase, beta-Grasp domain Xcom_00895 PF00120 Glutamine synthetase, catalytic domain Xcom_00900 PF00543 Nitrogen regulatory protein P-II Xcom_00905 PF00909 Ammonium Transporter Family Xcom_00910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_00910 PF00512 His Kinase A (phospho-acceptor) domain Xcom_00910 PF00989 PAS fold Xcom_00915 PF02954 Bacterial regulatory protein, Fis family Xcom_00915 PF00072 Response regulator receiver domain Xcom_00915 PF00158 Sigma-54 interaction domain Xcom_00920 PF00080 Copper/zinc superoxide dismutase (SODC) Xcom_00925 PF00080 Copper/zinc superoxide dismutase (SODC) Xcom_00935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Xcom_00945 PF02803 Thiolase, C-terminal domain Xcom_00945 PF00108 Thiolase, N-terminal domain Xcom_00980 PF00581 Rhodanese-like domain Xcom_00985 PF02556 Preprotein translocase subunit SecB Xcom_00990 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Xcom_00990 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Xcom_01005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Xcom_01005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Xcom_01005 PF00205 Thiamine pyrophosphate enzyme, central domain Xcom_01010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_01015 PF02954 Bacterial regulatory protein, Fis family Xcom_01015 PF00072 Response regulator receiver domain Xcom_01015 PF00158 Sigma-54 interaction domain Xcom_01030 PF07690 Major Facilitator Superfamily Xcom_01035 PF00588 SpoU rRNA Methylase family Xcom_01050 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Xcom_01050 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Xcom_01055 PF13784 Fic/DOC family N-terminal Xcom_01055 PF02661 Fic/DOC family Xcom_01060 PF00561 alpha/beta hydrolase fold Xcom_01065 PF03692 Putative zinc- or iron-chelating domain Xcom_01070 PF00501 AMP-binding enzyme Xcom_01075 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family Xcom_01085 PF01820 D-ala D-ala ligase N-terminus Xcom_01085 PF07478 D-ala D-ala ligase C-terminus Xcom_01100 PF03109 ABC1 family Xcom_01110 PF00849 RNA pseudouridylate synthase Xcom_01120 PF00472 RF-1 domain Xcom_01130 PF01112 Asparaginase Xcom_01135 PF01432 Peptidase family M3 Xcom_01170 PF13396 Phospholipase_D-nuclease N-terminal Xcom_01170 PF13091 PLD-like domain Xcom_01175 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family Xcom_01180 PF00106 short chain dehydrogenase Xcom_01185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_01185 PF03466 LysR substrate binding domain Xcom_01195 PF00083 Sugar (and other) transporter Xcom_01200 PF04632 Fusaric acid resistance protein family Xcom_01205 PF02321 Outer membrane efflux protein Xcom_01210 PF00529 HlyD membrane-fusion protein of T1SS Xcom_01210 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Xcom_01215 PF07869 Protein of unknown function (DUF1656) Xcom_01225 PF01227 GTP cyclohydrolase I Xcom_01245 PF01925 Sulfite exporter TauE/SafE Xcom_01250 PF02810 SEC-C motif Xcom_01260 PF01263 Aldose 1-epimerase Xcom_01265 PF07690 Major Facilitator Superfamily Xcom_01270 PF01126 Heme oxygenase Xcom_01275 PF13426 PAS domain Xcom_01275 PF00360 Phytochrome region Xcom_01275 PF01590 GAF domain Xcom_01275 PF08446 PAS fold Xcom_01280 PF03594 Benzoate membrane transport protein Xcom_01310 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Xcom_01310 PF06827 Zinc finger found in FPG and IleRS Xcom_01310 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Xcom_01320 PF04349 Periplasmic glucan biosynthesis protein, MdoG Xcom_01325 PF00512 His Kinase A (phospho-acceptor) domain Xcom_01325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_01325 PF00360 Phytochrome region Xcom_01325 PF08446 PAS fold Xcom_01325 PF01590 GAF domain Xcom_01330 PF00265 Thymidine kinase Xcom_01335 PF00580 UvrD/REP helicase N-terminal domain Xcom_01335 PF13361 UvrD-like helicase C-terminal domain Xcom_01355 PF04337 Protein of unknown function, DUF480 Xcom_01365 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) Xcom_01370 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Xcom_01375 PF04820 Tryptophan halogenase Xcom_01390 PF00356 Bacterial regulatory proteins, lacI family Xcom_01405 PF01553 Acyltransferase Xcom_01415 PF00550 Phosphopantetheine attachment site Xcom_01415 PF00107 Zinc-binding dehydrogenase Xcom_01415 PF16197 Ketoacyl-synthetase C-terminal extension Xcom_01415 PF08240 Alcohol dehydrogenase GroES-like domain Xcom_01415 PF00109 Beta-ketoacyl synthase, N-terminal domain Xcom_01415 PF02801 Beta-ketoacyl synthase, C-terminal domain Xcom_01415 PF00698 Acyl transferase domain Xcom_01415 PF14765 Polyketide synthase dehydratase Xcom_01415 PF08659 KR domain Xcom_01445 PF04616 Glycosyl hydrolases family 43 Xcom_01465 PF00331 Glycosyl hydrolase family 10 Xcom_01465 PF03422 Carbohydrate binding module (family 6) Xcom_01465 PF00553 Cellulose binding domain Xcom_01475 PF00331 Glycosyl hydrolase family 10 Xcom_01475 PF00553 Cellulose binding domain Xcom_01475 PF03422 Carbohydrate binding module (family 6) Xcom_01480 PF02614 Glucuronate isomerase Xcom_01485 PF02837 Glycosyl hydrolases family 2, sugar binding domain Xcom_01485 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Xcom_01485 PF00703 Glycosyl hydrolases family 2 Xcom_01485 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 Xcom_01485 PF16355 Domain of unknown function (DUF4982) Xcom_01490 PF00331 Glycosyl hydrolase family 10 Xcom_01495 PF08450 SMP-30/Gluconolactonase/LRE-like region Xcom_01515 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Xcom_01515 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Xcom_01525 PF00202 Aminotransferase class-III Xcom_01540 PF00171 Aldehyde dehydrogenase family Xcom_01580 PF01232 Mannitol dehydrogenase Rossmann domain Xcom_01580 PF08125 Mannitol dehydrogenase C-terminal domain Xcom_01585 PF14310 Fibronectin type III-like domain Xcom_01585 PF07691 PA14 domain Xcom_01585 PF01915 Glycosyl hydrolase family 3 C-terminal domain Xcom_01585 PF00933 Glycosyl hydrolase family 3 N terminal domain Xcom_01590 PF04616 Glycosyl hydrolases family 43 Xcom_01590 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain Xcom_01595 PF13378 Enolase C-terminal domain-like Xcom_01595 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Xcom_01605 PF07477 Glycosyl hydrolase family 67 C-terminus Xcom_01605 PF07488 Glycosyl hydrolase family 67 middle domain Xcom_01605 PF03648 Glycosyl hydrolase family 67 N-terminus Xcom_01610 PF00356 Bacterial regulatory proteins, lacI family Xcom_01630 PF04381 Putative exonuclease, RdgC Xcom_01650 PF12697 Alpha/beta hydrolase family Xcom_01655 PF00762 Ferrochelatase Xcom_01665 PF02416 mttA/Hcf106 family Xcom_01670 PF02416 mttA/Hcf106 family Xcom_01675 PF00902 Sec-independent protein translocase protein (TatC) Xcom_01685 PF00958 GMP synthase C terminal domain Xcom_01685 PF00117 Glutamine amidotransferase class-I Xcom_01700 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Xcom_01700 PF00437 Type II/IV secretion system protein Xcom_01705 PF02091 Glycyl-tRNA synthetase alpha subunit Xcom_01715 PF02092 Glycyl-tRNA synthetase beta subunit Xcom_01715 PF05746 DALR anticodon binding domain Xcom_01720 PF13181 Tetratricopeptide repeat Xcom_01725 PF00593 TonB dependent receptor Xcom_01725 PF07715 TonB-dependent Receptor Plug Domain Xcom_01730 PF17243 POTRA domain TamA domain 1 Xcom_01730 PF01103 Surface antigen Xcom_01735 PF04357 TamB, inner membrane protein subunit of TAM complex Xcom_01755 PF13570 PQQ-like domain Xcom_01755 PF01011 PQQ enzyme repeat Xcom_01755 PF13360 PQQ-like domain Xcom_01775 PF06165 Glycosyltransferase family 36 Xcom_01775 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Xcom_01790 PF00512 His Kinase A (phospho-acceptor) domain Xcom_01790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_01795 PF02659 Putative manganese efflux pump Xcom_01800 PF09339 IclR helix-turn-helix domain Xcom_01800 PF01614 Bacterial transcriptional regulator Xcom_01805 PF07690 Major Facilitator Superfamily Xcom_01810 PF05336 L-rhamnose mutarotase Xcom_01815 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Xcom_01815 PF13378 Enolase C-terminal domain-like Xcom_01825 PF01557 Fumarylacetoacetate (FAA) hydrolase family Xcom_01840 PF00248 Aldo/keto reductase family Xcom_01850 PF04616 Glycosyl hydrolases family 43 Xcom_01850 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain Xcom_01880 PF00072 Response regulator receiver domain Xcom_01880 PF00196 Bacterial regulatory proteins, luxR family Xcom_01885 PF00501 AMP-binding enzyme Xcom_01885 PF13193 AMP-binding enzyme C-terminal domain Xcom_01885 PF16177 Acetyl-coenzyme A synthetase N-terminus Xcom_01895 PF04341 Protein of unknown function, DUF485 Xcom_01900 PF00474 Sodium:solute symporter family Xcom_01910 PF03372 Endonuclease/Exonuclease/phosphatase family Xcom_01920 PF04226 Transglycosylase associated protein Xcom_01925 PF01648 4'-phosphopantetheinyl transferase superfamily Xcom_01930 PF16655 PhoD-like phosphatase, N-terminal domain Xcom_01930 PF09423 PhoD-like phosphatase Xcom_01935 PF09423 PhoD-like phosphatase Xcom_01935 PF16655 PhoD-like phosphatase, N-terminal domain Xcom_01940 PF02527 rRNA small subunit methyltransferase G Xcom_01965 PF13533 Biotin-lipoyl like Xcom_01970 PF00873 AcrB/AcrD/AcrF family Xcom_01980 PF00830 Ribosomal L28 family Xcom_01985 PF00471 Ribosomal protein L33 Xcom_01995 PF04909 Amidohydrolase Xcom_02005 PF04303 PrpF protein Xcom_02010 PF03737 Aldolase/RraA Xcom_02015 PF03466 LysR substrate binding domain Xcom_02015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_02020 PF13396 Phospholipase_D-nuclease N-terminal Xcom_02020 PF13091 PLD-like domain Xcom_02040 PF13361 UvrD-like helicase C-terminal domain Xcom_02040 PF00580 UvrD/REP helicase N-terminal domain Xcom_02050 PF12464 Maltose acetyltransferase Xcom_02050 PF14602 Hexapeptide repeat of succinyl-transferase Xcom_02075 PF05638 Type VI secretion system effector, Hcp Xcom_02105 PF17871 AAA lid domain Xcom_02105 PF10431 C-terminal, D2-small domain, of ClpB protein Xcom_02105 PF00004 ATPase family associated with various cellular activities (AAA) Xcom_02105 PF07724 AAA domain (Cdc48 subfamily) Xcom_02135 PF04542 Sigma-70 region 2 Xcom_02135 PF08281 Sigma-70, region 4 Xcom_02145 PF03793 PASTA domain Xcom_02145 PF00069 Protein kinase domain Xcom_02160 PF04717 Type VI secretion system, phage-baseplate injector Xcom_02160 PF16671 Actin cross-linking domain Xcom_02175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_02175 PF03466 LysR substrate binding domain Xcom_02180 PF00248 Aldo/keto reductase family Xcom_02210 PF00069 Protein kinase domain Xcom_02240 PF01367 5'-3' exonuclease, C-terminal SAM fold Xcom_02240 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Xcom_02240 PF00476 DNA polymerase family A Xcom_02240 PF01612 3'-5' exonuclease Xcom_02250 PF01218 Coproporphyrinogen III oxidase Xcom_02295 PF04820 Tryptophan halogenase Xcom_02300 PF00550 Phosphopantetheine attachment site Xcom_02310 PF01553 Acyltransferase Xcom_02315 PF07977 FabA-like domain Xcom_02365 PF00535 Glycosyl transferase family 2 Xcom_02380 PF05166 YcgL domain Xcom_02395 PF00723 Glycosyl hydrolases family 15 Xcom_02420 PF02254 TrkA-N domain Xcom_02420 PF00999 Sodium/hydrogen exchanger family Xcom_02430 PF00194 Eukaryotic-type carbonic anhydrase Xcom_02440 PF03448 MgtE intracellular N domain Xcom_02440 PF00571 CBS domain Xcom_02440 PF01769 Divalent cation transporter Xcom_02445 PF13607 Succinyl-CoA ligase like flavodoxin domain Xcom_02445 PF00583 Acetyltransferase (GNAT) family Xcom_02445 PF13380 CoA binding domain Xcom_02460 PF03477 ATP cone domain Xcom_02460 PF02867 Ribonucleotide reductase, barrel domain Xcom_02460 PF00317 Ribonucleotide reductase, all-alpha domain Xcom_02470 PF00268 Ribonucleotide reductase, small chain Xcom_02475 PF00258 Flavodoxin Xcom_02500 PF01420 Type I restriction modification DNA specificity domain Xcom_02505 PF02384 N-6 DNA Methylase Xcom_02515 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Xcom_02515 PF08463 EcoEI R protein C-terminal Xcom_02515 PF00271 Helicase conserved C-terminal domain Xcom_02515 PF04851 Type III restriction enzyme, res subunit Xcom_02555 PF00300 Histidine phosphatase superfamily (branch 1) Xcom_02555 PF13456 Reverse transcriptase-like Xcom_02560 PF01256 Carbohydrate kinase Xcom_02585 PF07971 Glycosyl hydrolase family 92 Xcom_02585 PF17678 Glycosyl hydrolase family 92 N-terminal domain Xcom_02595 PF00106 short chain dehydrogenase Xcom_02605 PF07992 Pyridine nucleotide-disulphide oxidoreductase Xcom_02625 PF17755 UvrA DNA-binding domain Xcom_02650 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Xcom_02650 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Xcom_02655 PF03450 CO dehydrogenase flavoprotein C-terminal domain Xcom_02655 PF00941 FAD binding domain in molybdopterin dehydrogenase Xcom_02660 PF00111 2Fe-2S iron-sulfur cluster binding domain Xcom_02660 PF01799 [2Fe-2S] binding domain Xcom_02695 PF01726 LexA DNA binding domain Xcom_02695 PF00717 Peptidase S24-like Xcom_02710 PF14579 Helix-hairpin-helix motif Xcom_02710 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Xcom_02710 PF07733 Bacterial DNA polymerase III alpha NTPase domain Xcom_02710 PF02811 PHP domain Xcom_02720 PF00326 Prolyl oligopeptidase family Xcom_02730 PF03169 OPT oligopeptide transporter protein Xcom_02750 PF07676 WD40-like Beta Propeller Repeat Xcom_02750 PF00326 Prolyl oligopeptidase family Xcom_02750 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region Xcom_02765 PF02311 AraC-like ligand binding domain Xcom_02765 PF12833 Helix-turn-helix domain Xcom_02790 PF18011 C-terminal domain found in long catalases Xcom_02790 PF00199 Catalase Xcom_02790 PF06628 Catalase-related immune-responsive Xcom_02795 PF00248 Aldo/keto reductase family Xcom_02800 PF00135 Carboxylesterase family Xcom_02805 PF02347 Glycine cleavage system P-protein Xcom_02825 PF00664 ABC transporter transmembrane region Xcom_02825 PF03412 Peptidase C39 family Xcom_02825 PF00005 ABC transporter Xcom_02850 PF08019 Phosphoethanolamine transferase EptA/EptB Xcom_02850 PF00884 Sulfatase Xcom_02865 PF00486 Transcriptional regulatory protein, C terminal Xcom_02865 PF00072 Response regulator receiver domain Xcom_02870 PF08521 Two-component sensor kinase N-terminal Xcom_02870 PF00512 His Kinase A (phospho-acceptor) domain Xcom_02870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_02880 PF03776 Septum formation topological specificity factor MinE Xcom_02885 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Xcom_02890 PF03775 Septum formation inhibitor MinC, C-terminal domain Xcom_02890 PF05209 Septum formation inhibitor MinC, N-terminal domain Xcom_02905 PF07730 Histidine kinase Xcom_02910 PF00196 Bacterial regulatory proteins, luxR family Xcom_02910 PF00072 Response regulator receiver domain Xcom_02925 PF00730 HhH-GPD superfamily base excision DNA repair protein Xcom_02955 PF02222 ATP-grasp domain Xcom_02975 PF04376 Arginine-tRNA-protein transferase, N terminus Xcom_02975 PF04377 Arginine-tRNA-protein transferase, C terminus Xcom_02990 PF04542 Sigma-70 region 2 Xcom_02990 PF08281 Sigma-70, region 4 Xcom_03005 PF00378 Enoyl-CoA hydratase/isomerase Xcom_03020 PF17760 UvrA interaction domain Xcom_03020 PF00005 ABC transporter Xcom_03020 PF17755 UvrA DNA-binding domain Xcom_03025 PF00829 Ribosomal prokaryotic L21 protein Xcom_03030 PF01016 Ribosomal L27 protein Xcom_03035 PF01926 50S ribosome-binding GTPase Xcom_03035 PF01018 GTP1/OBG Xcom_03040 PF01649 Ribosomal protein S20 Xcom_03045 PF03023 Lipid II flippase MurJ Xcom_03050 PF01687 Riboflavin kinase Xcom_03050 PF06574 FAD synthetase Xcom_03055 PF06827 Zinc finger found in FPG and IleRS Xcom_03055 PF00133 tRNA synthetases class I (I, L, M and V) Xcom_03055 PF08264 Anticodon-binding domain of tRNA Xcom_03060 PF01252 Signal peptidase (SPase) II Xcom_03065 PF02401 LytB protein Xcom_03075 PF06481 COX Aromatic Rich Motif Xcom_03075 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Xcom_03080 PF00115 Cytochrome C and Quinol oxidase polypeptide I Xcom_03085 PF00510 Cytochrome c oxidase subunit III Xcom_03090 PF03626 Prokaryotic Cytochrome C oxidase subunit IV Xcom_03100 PF18073 Rubredoxin metal binding domain Xcom_03105 PF05656 Protein of unknown function (DUF805) Xcom_03115 PF12833 Helix-turn-helix domain Xcom_03120 PF00183 Hsp90 protein Xcom_03120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_03130 PF01740 STAS domain Xcom_03130 PF08678 Rsbr N terminal Xcom_03140 PF13581 Histidine kinase-like ATPase domain Xcom_03150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_03150 PF00672 HAMP domain Xcom_03150 PF17149 Periplasmic sensor domain found in signal transduction proteins Xcom_03150 PF00512 His Kinase A (phospho-acceptor) domain Xcom_03150 PF01627 Hpt domain Xcom_03150 PF00072 Response regulator receiver domain Xcom_03155 PF00072 Response regulator receiver domain Xcom_03155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_03155 PF00512 His Kinase A (phospho-acceptor) domain Xcom_03155 PF08448 PAS fold Xcom_03155 PF13188 PAS domain Xcom_03160 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain Xcom_03160 PF04616 Glycosyl hydrolases family 43 Xcom_03165 PF00593 TonB dependent receptor Xcom_03165 PF07715 TonB-dependent Receptor Plug Domain Xcom_03170 PF00085 Thioredoxin Xcom_03175 PF07237 Protein of unknown function (DUF1428) Xcom_03180 PF13492 GAF domain Xcom_03180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_03180 PF00512 His Kinase A (phospho-acceptor) domain Xcom_03180 PF02702 Osmosensitive K+ channel His kinase sensor domain Xcom_03180 PF13493 Domain of unknown function (DUF4118) Xcom_03185 PF01339 CheB methylesterase Xcom_03190 PF01739 CheR methyltransferase, SAM binding domain Xcom_03190 PF03705 CheR methyltransferase, all-alpha domain Xcom_03195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_03195 PF00512 His Kinase A (phospho-acceptor) domain Xcom_03195 PF00672 HAMP domain Xcom_03195 PF00072 Response regulator receiver domain Xcom_03195 PF01627 Hpt domain Xcom_03195 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Xcom_03200 PF13426 PAS domain Xcom_03200 PF00072 Response regulator receiver domain Xcom_03200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_03205 PF00072 Response regulator receiver domain Xcom_03210 PF06964 Alpha-L-arabinofuranosidase C-terminal domain Xcom_03215 PF01263 Aldose 1-epimerase Xcom_03220 PF01578 Cytochrome C assembly protein Xcom_03225 PF02978 Signal peptide binding domain Xcom_03225 PF00448 SRP54-type protein, GTPase domain Xcom_03225 PF02881 SRP54-type protein, helical bundle domain Xcom_03230 PF03060 Nitronate monooxygenase Xcom_03235 PF01063 Amino-transferase class IV Xcom_03240 PF00886 Ribosomal protein S16 Xcom_03245 PF01782 RimM N-terminal domain Xcom_03245 PF05239 PRC-barrel domain Xcom_03250 PF01746 tRNA (Guanine-1)-methyltransferase Xcom_03255 PF01245 Ribosomal protein L19 Xcom_03260 PF01554 MatE Xcom_03280 PF01479 S4 domain Xcom_03295 PF00488 MutS domain V Xcom_03295 PF01624 MutS domain I Xcom_03295 PF05190 MutS family domain IV Xcom_03295 PF05188 MutS domain II Xcom_03295 PF05192 MutS domain III Xcom_03330 PF00106 short chain dehydrogenase Xcom_03345 PF00750 tRNA synthetases class I (R) Xcom_03345 PF03485 Arginyl tRNA synthetase N terminal domain Xcom_03345 PF05746 DALR anticodon binding domain Xcom_03350 PF04002 RadC-like JAB domain Xcom_03355 PF02441 Flavoprotein Xcom_03355 PF04127 DNA / pantothenate metabolism flavoprotein Xcom_03360 PF00692 dUTPase Xcom_03365 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Xcom_03365 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Xcom_03365 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Xcom_03365 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Xcom_03380 PF00535 Glycosyl transferase family 2 Xcom_03385 PF01370 NAD dependent epimerase/dehydratase family Xcom_03400 PF02195 ParB-like nuclease domain Xcom_03400 PF17762 HTH domain found in ParB protein Xcom_03405 PF13614 AAA domain Xcom_03415 PF00156 Phosphoribosyl transferase domain Xcom_03420 PF03372 Endonuclease/Exonuclease/phosphatase family Xcom_03425 PF07690 Major Facilitator Superfamily Xcom_03435 PF03702 Anhydro-N-acetylmuramic acid kinase Xcom_03440 PF04225 Opacity-associated protein A LysM-like domain Xcom_03440 PF01551 Peptidase family M23 Xcom_03445 PF00579 tRNA synthetases class I (W and Y) Xcom_03480 PF00171 Aldehyde dehydrogenase family Xcom_03480 PF01619 Proline dehydrogenase Xcom_03480 PF14850 DNA-binding domain of Proline dehydrogenase Xcom_03480 PF18327 Proline utilization A proline dehydrogenase N-terminal domain Xcom_03490 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Xcom_03490 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Xcom_03495 PF00115 Cytochrome C and Quinol oxidase polypeptide I Xcom_03505 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 Xcom_03510 PF00510 Cytochrome c oxidase subunit III Xcom_03535 PF01040 UbiA prenyltransferase family Xcom_03545 PF13593 SBF-like CPA transporter family (DUF4137) Xcom_03550 PF01807 CHC2 zinc finger Xcom_03550 PF08275 DNA primase catalytic core, N-terminal domain Xcom_03550 PF08278 DNA primase DnaG DnaB-binding Xcom_03550 PF10410 DnaB-helicase binding domain of primase Xcom_03555 PF03631 Virulence factor BrkB Xcom_03565 PF09424 Yqey-like protein Xcom_03570 PF01165 Ribosomal protein S21 Xcom_03575 PF00814 Glycoprotease family Xcom_03580 PF02152 Dihydroneopterin aldolase Xcom_03585 PF00933 Glycosyl hydrolase family 3 N terminal domain Xcom_03585 PF14310 Fibronectin type III-like domain Xcom_03585 PF01915 Glycosyl hydrolase family 3 C-terminal domain Xcom_03590 PF07995 Glucose / Sorbosone dehydrogenase Xcom_03595 PF05360 yiaA/B two helix domain Xcom_03610 PF13520 Amino acid permease Xcom_03620 PF13378 Enolase C-terminal domain-like Xcom_03620 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Xcom_03630 PF01510 N-acetylmuramoyl-L-alanine amidase Xcom_03635 PF01427 D-ala-D-ala dipeptidase Xcom_03685 PF07063 Domain of unknown function (DUF1338) Xcom_03690 PF00873 AcrB/AcrD/AcrF family Xcom_03695 PF00873 AcrB/AcrD/AcrF family Xcom_03700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Xcom_03705 PF01546 Peptidase family M20/M25/M40 Xcom_03705 PF07687 Peptidase dimerisation domain Xcom_03715 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term Xcom_03715 PF14489 QueF-like protein Xcom_03720 PF01476 LysM domain Xcom_03720 PF04972 BON domain Xcom_03730 PF03971 Monomeric isocitrate dehydrogenase Xcom_03740 PF03466 LysR substrate binding domain Xcom_03740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_03745 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) Xcom_03755 PF07497 Rho termination factor, RNA-binding domain Xcom_03755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Xcom_03755 PF07498 Rho termination factor, N-terminal domain Xcom_03760 PF00085 Thioredoxin Xcom_03765 PF00271 Helicase conserved C-terminal domain Xcom_03765 PF00270 DEAD/DEAH box helicase Xcom_03765 PF12300 ATP-dependent RNA helicase RhlB Xcom_03770 PF00005 ABC transporter Xcom_03775 PF18075 FtsX extracellular domain Xcom_03780 PF00072 Response regulator receiver domain Xcom_03785 PF03167 Uracil DNA glycosylase superfamily Xcom_03790 PF04545 Sigma-70, region 4 Xcom_03790 PF04542 Sigma-70 region 2 Xcom_03795 PF03458 UPF0126 domain Xcom_03800 PF07992 Pyridine nucleotide-disulphide oxidoreductase Xcom_03815 PF00043 Glutathione S-transferase, C-terminal domain Xcom_03815 PF13417 Glutathione S-transferase, N-terminal domain Xcom_03820 PF00271 Helicase conserved C-terminal domain Xcom_03820 PF00270 DEAD/DEAH box helicase Xcom_03820 PF17764 3′ DNA-binding domain (3′BD) Xcom_03820 PF18074 Primosomal protein N C-terminal domain Xcom_03820 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Xcom_03840 PF01554 MatE Xcom_03845 PF01343 Peptidase family S49 Xcom_03870 PF01300 Telomere recombination Xcom_03875 PF13368 Topoisomerase C-terminal repeat Xcom_03875 PF01131 DNA topoisomerase Xcom_03875 PF01751 Toprim domain Xcom_03885 PF00114 Pilin (bacterial filament) Xcom_03885 PF07963 Prokaryotic N-terminal methylation motif Xcom_03890 PF04361 Protein of unknown function (DUF494) Xcom_03895 PF17782 DprA winged helix domain Xcom_03895 PF02481 DNA recombination-mediator protein A Xcom_03900 PF01476 LysM domain Xcom_03905 PF01327 Polypeptide deformylase Xcom_03910 PF02911 Formyl transferase, C-terminal domain Xcom_03910 PF00551 Formyl transferase Xcom_03915 PF01029 NusB family Xcom_03915 PF01189 16S rRNA methyltransferase RsmB/F Xcom_03930 PF00535 Glycosyl transferase family 2 Xcom_03950 PF00925 GTP cyclohydrolase II Xcom_03965 PF03279 Bacterial lipid A biosynthesis acyltransferase Xcom_03970 PF02580 D-Tyr-tRNA(Tyr) deacylase Xcom_03975 PF04539 Sigma-70 region 3 Xcom_03975 PF03979 Sigma-70 factor, region 1.1 Xcom_03975 PF04545 Sigma-70, region 4 Xcom_03975 PF04542 Sigma-70 region 2 Xcom_03975 PF00140 Sigma-70 factor, region 1.2 Xcom_03975 PF04546 Sigma-70, non-essential region Xcom_03990 PF01494 FAD binding domain Xcom_04005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_04005 PF03466 LysR substrate binding domain Xcom_04015 PF00557 Metallopeptidase family M24 Xcom_04025 PF00654 Voltage gated chloride channel Xcom_04030 PF01740 STAS domain Xcom_04030 PF00916 Sulfate permease family Xcom_04060 PF02525 Flavodoxin-like fold Xcom_04065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_04065 PF03466 LysR substrate binding domain Xcom_04085 PF01042 Endoribonuclease L-PSP Xcom_04090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_04090 PF03466 LysR substrate binding domain Xcom_04100 PF00005 ABC transporter Xcom_04115 PF00593 TonB dependent receptor Xcom_04115 PF07715 TonB-dependent Receptor Plug Domain Xcom_04160 PF00107 Zinc-binding dehydrogenase Xcom_04160 PF08240 Alcohol dehydrogenase GroES-like domain Xcom_04160 PF13823 Alcohol dehydrogenase GroES-associated Xcom_04175 PF00005 ABC transporter Xcom_04175 PF00664 ABC transporter transmembrane region Xcom_04185 PF03275 UDP-galactopyranose mutase Xcom_04195 PF16363 GDP-mannose 4,6 dehydratase Xcom_04215 PF02322 Cytochrome bd terminal oxidase subunit II Xcom_04220 PF01654 Cytochrome bd terminal oxidase subunit I Xcom_04235 PF00072 Response regulator receiver domain Xcom_04235 PF00158 Sigma-54 interaction domain Xcom_04235 PF02954 Bacterial regulatory protein, Fis family Xcom_04250 PF08448 PAS fold Xcom_04250 PF01339 CheB methylesterase Xcom_04250 PF03705 CheR methyltransferase, all-alpha domain Xcom_04250 PF01739 CheR methyltransferase, SAM binding domain Xcom_04270 PF05067 Manganese containing catalase Xcom_04275 PF05974 Domain of unknown function (DUF892) Xcom_04295 PF02743 Cache domain Xcom_04295 PF00672 HAMP domain Xcom_04295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_04295 PF06580 Histidine kinase Xcom_04300 PF00072 Response regulator receiver domain Xcom_04300 PF04397 LytTr DNA-binding domain Xcom_04310 PF13520 Amino acid permease Xcom_04325 PF01431 Peptidase family M13 Xcom_04325 PF05649 Peptidase family M13 Xcom_04340 PF00248 Aldo/keto reductase family Xcom_04345 PF03358 NADPH-dependent FMN reductase Xcom_04350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_04350 PF03466 LysR substrate binding domain Xcom_04355 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Xcom_04365 PF03167 Uracil DNA glycosylase superfamily Xcom_04370 PF02469 Fasciclin domain Xcom_04380 PF00999 Sodium/hydrogen exchanger family Xcom_04385 PF00005 ABC transporter Xcom_04390 PF01061 ABC-2 type transporter Xcom_04420 PF00691 OmpA family Xcom_04420 PF13677 Membrane MotB of proton-channel complex MotA/MotB Xcom_04425 PF01618 MotA/TolQ/ExbB proton channel family Xcom_04450 PF01037 Lrp/AsnC ligand binding domain Xcom_04455 PF01266 FAD dependent oxidoreductase Xcom_04460 PF01168 Alanine racemase, N-terminal domain Xcom_04460 PF00842 Alanine racemase, C-terminal domain Xcom_04485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_04485 PF00512 His Kinase A (phospho-acceptor) domain Xcom_04485 PF00989 PAS fold Xcom_04495 PF07995 Glucose / Sorbosone dehydrogenase Xcom_04505 PF08468 Methyltransferase small domain N-terminal Xcom_04505 PF05175 Methyltransferase small domain Xcom_04510 PF00849 RNA pseudouridylate synthase Xcom_04510 PF01479 S4 domain Xcom_04515 PF13419 Haloacid dehalogenase-like hydrolase Xcom_04540 PF01627 Hpt domain Xcom_04540 PF00512 His Kinase A (phospho-acceptor) domain Xcom_04540 PF00989 PAS fold Xcom_04540 PF18415 Histidine kinase receptor ArcB trans-membrane domain Xcom_04540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_04540 PF00072 Response regulator receiver domain Xcom_04550 PF04461 Protein of unknown function (DUF520) Xcom_04555 PF00892 EamA-like transporter family Xcom_04560 PF09383 NIL domain Xcom_04560 PF00005 ABC transporter Xcom_04565 PF00528 Binding-protein-dependent transport system inner membrane component Xcom_04570 PF03180 NLPA lipoprotein Xcom_04620 PF02817 e3 binding domain Xcom_04620 PF00364 Biotin-requiring enzyme Xcom_04620 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Xcom_04630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Xcom_04630 PF07992 Pyridine nucleotide-disulphide oxidoreductase Xcom_04660 PF00119 ATP synthase A chain Xcom_04665 PF00137 ATP synthase subunit C Xcom_04670 PF00430 ATP synthase B/B' CF(0) Xcom_04675 PF00213 ATP synthase delta (OSCP) subunit Xcom_04680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Xcom_04680 PF00306 ATP synthase alpha/beta chain, C terminal domain Xcom_04680 PF02874 ATP synthase alpha/beta family, beta-barrel domain Xcom_04685 PF00231 ATP synthase Xcom_04690 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Xcom_04690 PF02874 ATP synthase alpha/beta family, beta-barrel domain Xcom_04695 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Xcom_04695 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Xcom_04710 PF14602 Hexapeptide repeat of succinyl-transferase Xcom_04710 PF00132 Bacterial transferase hexapeptide (six repeats) Xcom_04710 PF12804 MobA-like NTP transferase domain Xcom_04715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_04715 PF00512 His Kinase A (phospho-acceptor) domain Xcom_04720 PF02954 Bacterial regulatory protein, Fis family Xcom_04720 PF00158 Sigma-54 interaction domain Xcom_04720 PF00072 Response regulator receiver domain Xcom_04730 PF12704 MacB-like periplasmic core domain Xcom_04730 PF00005 ABC transporter Xcom_04730 PF02687 FtsX-like permease family Xcom_04735 PF02687 FtsX-like permease family Xcom_04735 PF12704 MacB-like periplasmic core domain Xcom_04740 PF00005 ABC transporter Xcom_04745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Xcom_04750 PF01380 SIS domain Xcom_04775 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Xcom_04780 PF05275 Copper resistance protein B precursor (CopB) Xcom_04785 PF07731 Multicopper oxidase Xcom_04785 PF07732 Multicopper oxidase Xcom_04785 PF00394 Multicopper oxidase Xcom_04800 PF01432 Peptidase family M3 Xcom_04810 PF00109 Beta-ketoacyl synthase, N-terminal domain Xcom_04810 PF02801 Beta-ketoacyl synthase, C-terminal domain Xcom_04815 PF07977 FabA-like domain Xcom_04825 PF11799 impB/mucB/samB family C-terminal domain Xcom_04825 PF00817 impB/mucB/samB family Xcom_04830 PF13419 Haloacid dehalogenase-like hydrolase Xcom_04840 PF13185 GAF domain Xcom_04855 PF01242 6-pyruvoyl tetrahydropterin synthase Xcom_04860 PF00271 Helicase conserved C-terminal domain Xcom_04860 PF00270 DEAD/DEAH box helicase Xcom_04875 PF02798 Glutathione S-transferase, N-terminal domain Xcom_04875 PF14497 Glutathione S-transferase, C-terminal domain Xcom_04880 PF00437 Type II/IV secretion system protein Xcom_04900 PF00571 CBS domain Xcom_04900 PF00291 Pyridoxal-phosphate dependent enzyme Xcom_04905 PF01053 Cys/Met metabolism PLP-dependent enzyme Xcom_04915 PF00534 Glycosyl transferases group 1 Xcom_04915 PF13439 Glycosyltransferase Family 4 Xcom_04925 PF00005 ABC transporter Xcom_04930 PF00069 Protein kinase domain Xcom_04930 PF13847 Methyltransferase domain Xcom_04935 PF00534 Glycosyl transferases group 1 Xcom_04935 PF13477 Glycosyl transferase 4-like Xcom_04940 PF16363 GDP-mannose 4,6 dehydratase Xcom_04945 PF16363 GDP-mannose 4,6 dehydratase Xcom_04975 PF00535 Glycosyl transferase family 2 Xcom_04985 PF00766 Electron transfer flavoprotein FAD-binding domain Xcom_04985 PF01012 Electron transfer flavoprotein domain Xcom_04990 PF01012 Electron transfer flavoprotein domain Xcom_04995 PF16363 GDP-mannose 4,6 dehydratase Xcom_05000 PF00483 Nucleotidyl transferase Xcom_05005 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Xcom_05010 PF04321 RmlD substrate binding domain Xcom_05015 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Xcom_05015 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Xcom_05015 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Xcom_05020 PF01050 Mannose-6-phosphate isomerase Xcom_05020 PF00483 Nucleotidyl transferase Xcom_05025 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Xcom_05025 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Xcom_05025 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Xcom_05025 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Xcom_05030 PF01144 Coenzyme A transferase Xcom_05035 PF01144 Coenzyme A transferase Xcom_05060 PF02470 MlaD protein Xcom_05060 PF03886 ABC-type transport auxiliary lipoprotein component Xcom_05065 PF00005 ABC transporter Xcom_05070 PF02405 Permease MlaE Xcom_05080 PF00816 H-NS histone family Xcom_05085 PF04073 Aminoacyl-tRNA editing domain Xcom_05085 PF03129 Anticodon binding domain Xcom_05085 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Xcom_05095 PF01066 CDP-alcohol phosphatidyltransferase Xcom_05115 PF13276 HTH-like domain Xcom_05115 PF13683 Integrase core domain Xcom_05125 PF01464 Transglycosylase SLT domain Xcom_05125 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Xcom_05130 PF07715 TonB-dependent Receptor Plug Domain Xcom_05130 PF00593 TonB dependent receptor Xcom_05135 PF10458 Valyl tRNA synthetase tRNA binding arm Xcom_05135 PF00133 tRNA synthetases class I (I, L, M and V) Xcom_05135 PF08264 Anticodon-binding domain of tRNA Xcom_05150 PF02789 Cytosol aminopeptidase family, N-terminal domain Xcom_05150 PF00883 Cytosol aminopeptidase family, catalytic domain Xcom_05160 PF03739 Lipopolysaccharide export system permease LptF/LptG Xcom_05175 PF02899 Phage integrase, N-terminal SAM-like domain Xcom_05175 PF00589 Phage integrase family Xcom_05190 PF10411 Disulfide bond isomerase protein N-terminus Xcom_05190 PF13098 Thioredoxin-like domain Xcom_05200 PF02769 AIR synthase related protein, C-terminal domain Xcom_05200 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Xcom_05200 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal Xcom_05210 PF13018 Extended Signal Peptide of Type V secretion system Xcom_05210 PF03895 YadA-like membrane anchor domain Xcom_05210 PF05662 Coiled stalk of trimeric autotransporter adhesin Xcom_05210 PF05658 Head domain of trimeric autotransporter adhesin Xcom_05215 PF00082 Subtilase family Xcom_05215 PF04151 Bacterial pre-peptidase C-terminal domain Xcom_05220 PF05662 Coiled stalk of trimeric autotransporter adhesin Xcom_05220 PF13018 Extended Signal Peptide of Type V secretion system Xcom_05220 PF05658 Head domain of trimeric autotransporter adhesin Xcom_05220 PF03895 YadA-like membrane anchor domain Xcom_05225 PF04151 Bacterial pre-peptidase C-terminal domain Xcom_05225 PF00082 Subtilase family Xcom_05230 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Xcom_05230 PF00437 Type II/IV secretion system protein Xcom_05240 PF00482 Type II secretion system (T2SS), protein F Xcom_05245 PF08334 Type II secretion system (T2SS), protein G Xcom_05250 PF12019 Type II transport protein GspH Xcom_05255 PF07963 Prokaryotic N-terminal methylation motif Xcom_05265 PF03934 Type II secretion system (T2SS), protein K Xcom_05270 PF05137 Fimbrial assembly protein (PilN) Xcom_05275 PF10741 Type II secretion system (T2SS), protein M subtype b Xcom_05285 PF00263 Bacterial type II and III secretion system protein Xcom_05285 PF03958 Bacterial type II/III secretion system short domain Xcom_05295 PF00392 Bacterial regulatory proteins, gntR family Xcom_05295 PF07702 UTRA domain Xcom_05305 PF07715 TonB-dependent Receptor Plug Domain Xcom_05305 PF00593 TonB dependent receptor Xcom_05345 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Xcom_05345 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Xcom_05360 PF07238 PilZ domain Xcom_05360 PF00535 Glycosyl transferase family 2 Xcom_05360 PF03552 Cellulose synthase Xcom_05365 PF03170 Bacterial cellulose synthase subunit Xcom_05370 PF01270 Glycosyl hydrolases family 8 Xcom_05375 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) Xcom_05395 PF03960 ArsC family Xcom_05405 PF01327 Polypeptide deformylase Xcom_05410 PF02645 Uncharacterised protein, DegV family COG1307 Xcom_05430 PF01979 Amidohydrolase family Xcom_05435 PF01979 Amidohydrolase family Xcom_05450 PF00462 Glutaredoxin Xcom_05455 PF01522 Polysaccharide deacetylase Xcom_05470 PF00155 Aminotransferase class I and II Xcom_05475 PF03193 RsgA GTPase Xcom_05490 PF00128 Alpha amylase, catalytic domain Xcom_05505 PF00356 Bacterial regulatory proteins, lacI family Xcom_05510 PF00106 short chain dehydrogenase Xcom_05515 PF03600 Citrate transporter Xcom_05530 PF00486 Transcriptional regulatory protein, C terminal Xcom_05530 PF00072 Response regulator receiver domain Xcom_05535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_05535 PF00512 His Kinase A (phospho-acceptor) domain Xcom_05535 PF08521 Two-component sensor kinase N-terminal Xcom_05550 PF00196 Bacterial regulatory proteins, luxR family Xcom_05550 PF00072 Response regulator receiver domain Xcom_05565 PF00248 Aldo/keto reductase family Xcom_05570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_05570 PF03466 LysR substrate binding domain Xcom_05580 PF07690 Major Facilitator Superfamily Xcom_05590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_05590 PF00512 His Kinase A (phospho-acceptor) domain Xcom_05590 PF02743 Cache domain Xcom_05600 PF00375 Sodium:dicarboxylate symporter family Xcom_05605 PF00390 Malic enzyme, N-terminal domain Xcom_05605 PF01515 Phosphate acetyl/butaryl transferase Xcom_05605 PF03949 Malic enzyme, NAD binding domain Xcom_05630 PF03279 Bacterial lipid A biosynthesis acyltransferase Xcom_05640 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Xcom_05645 PF02321 Outer membrane efflux protein Xcom_05660 PF00990 Diguanylate cyclase, GGDEF domain Xcom_05660 PF17151 Periplasmic sensor domain Xcom_05665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_05670 PF00330 Aconitase family (aconitate hydratase) Xcom_05675 PF00694 Aconitase C-terminal domain Xcom_05680 PF00180 Isocitrate/isopropylmalate dehydrogenase Xcom_05685 PF00682 HMGL-like Xcom_05685 PF08502 LeuA allosteric (dimerisation) domain Xcom_05690 PF00291 Pyridoxal-phosphate dependent enzyme Xcom_05700 PF00205 Thiamine pyrophosphate enzyme, central domain Xcom_05700 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Xcom_05700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Xcom_05705 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Xcom_05705 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Xcom_05715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_05715 PF12729 Four helix bundle sensory module for signal transduction Xcom_05715 PF00672 HAMP domain Xcom_05720 PF00593 TonB dependent receptor Xcom_05720 PF07715 TonB-dependent Receptor Plug Domain Xcom_05730 PF13667 ThiC-associated domain Xcom_05730 PF01964 Radical SAM ThiC family Xcom_05735 PF18500 CadC C-terminal domain 1 Xcom_05735 PF00486 Transcriptional regulatory protein, C terminal Xcom_05740 PF12833 Helix-turn-helix domain Xcom_05745 PF07715 TonB-dependent Receptor Plug Domain Xcom_05745 PF00593 TonB dependent receptor Xcom_05755 PF00719 Inorganic pyrophosphatase Xcom_05765 PF03030 Inorganic H+ pyrophosphatase Xcom_05795 PF04610 TrbL/VirB6 plasmid conjugal transfer protein Xcom_05805 PF00365 Phosphofructokinase Xcom_05815 PF02875 Mur ligase family, glutamate ligase domain Xcom_05815 PF01225 Mur ligase family, catalytic domain Xcom_05815 PF08245 Mur ligase middle domain Xcom_05825 PF01062 Bestrophin, RFP-TM, chloride channel Xcom_05830 PF01569 PAP2 superfamily Xcom_05845 PF00027 Cyclic nucleotide-binding domain Xcom_05845 PF00520 Ion transport protein Xcom_05850 PF00202 Aminotransferase class-III Xcom_05865 PF01593 Flavin containing amine oxidoreductase Xcom_05870 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Xcom_05870 PF00034 Cytochrome c Xcom_05880 PF00155 Aminotransferase class I and II Xcom_05885 PF00127 Copper binding proteins, plastocyanin/azurin family Xcom_05890 PF17874 MalT-like TPR region Xcom_05890 PF00196 Bacterial regulatory proteins, luxR family Xcom_05895 PF00202 Aminotransferase class-III Xcom_05910 PF02581 Thiamine monophosphate synthase Xcom_05915 PF00301 Rubredoxin Xcom_05920 PF13369 Transglutaminase-like superfamily Xcom_05930 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Xcom_05940 PF01812 5-formyltetrahydrofolate cyclo-ligase family Xcom_05950 PF05164 Cell division protein ZapA Xcom_05960 PF03695 Uncharacterised protein family (UPF0149) Xcom_05965 PF05195 Aminopeptidase P, N-terminal domain Xcom_05965 PF00557 Metallopeptidase family M24 Xcom_05975 PF00557 Metallopeptidase family M24 Xcom_05990 PF06969 HemN C-terminal domain Xcom_05990 PF04055 Radical SAM superfamily Xcom_05995 PF01725 Ham1 family Xcom_06005 PF01138 3' exoribonuclease family, domain 1 Xcom_06005 PF03725 3' exoribonuclease family, domain 2 Xcom_06010 PF03755 YicC-like family, N-terminal region Xcom_06010 PF08340 Domain of unknown function (DUF1732) Xcom_06015 PF00625 Guanylate kinase Xcom_06020 PF01192 RNA polymerase Rpb6 Xcom_06025 PF02824 TGS domain Xcom_06025 PF13291 ACT domain Xcom_06025 PF04607 Region found in RelA / SpoT proteins Xcom_06030 PF01042 Endoribonuclease L-PSP Xcom_06035 PF00270 DEAD/DEAH box helicase Xcom_06035 PF00271 Helicase conserved C-terminal domain Xcom_06035 PF17191 RecG wedge domain Xcom_06040 PF01156 Inosine-uridine preferring nucleoside hydrolase Xcom_06045 PF01197 Ribosomal protein L31 Xcom_06050 PF00285 Citrate synthase, C-terminal domain Xcom_06065 PF17092 Penicillin-binding protein OB-like domain Xcom_06065 PF00905 Penicillin binding protein transpeptidase domain Xcom_06065 PF00912 Transglycosylase Xcom_06090 PF00263 Bacterial type II and III secretion system protein Xcom_06090 PF11741 AMIN domain Xcom_06090 PF03958 Bacterial type II/III secretion system short domain Xcom_06090 PF07660 Secretin and TonB N terminus short domain Xcom_06100 PF17863 AAA lid domain Xcom_06100 PF07726 ATPase family associated with various cellular activities (AAA) Xcom_06120 PF00092 von Willebrand factor type A domain Xcom_06120 PF07584 Aerotolerance regulator N-terminal Xcom_06135 PF00375 Sodium:dicarboxylate symporter family Xcom_06140 PF02779 Transketolase, pyrimidine binding domain Xcom_06140 PF00456 Transketolase, thiamine diphosphate binding domain Xcom_06140 PF02780 Transketolase, C-terminal domain Xcom_06145 PF00593 TonB dependent receptor Xcom_06145 PF07715 TonB-dependent Receptor Plug Domain Xcom_06150 PF04225 Opacity-associated protein A LysM-like domain Xcom_06150 PF01551 Peptidase family M23 Xcom_06155 PF01476 LysM domain Xcom_06155 PF03734 L,D-transpeptidase catalytic domain Xcom_06190 PF00005 ABC transporter Xcom_06190 PF03459 TOBE domain Xcom_06195 PF00528 Binding-protein-dependent transport system inner membrane component Xcom_06205 PF04273 Putative phosphatase (DUF442) Xcom_06205 PF00753 Metallo-beta-lactamase superfamily Xcom_06215 PF03922 OmpW family Xcom_06220 PF03922 OmpW family Xcom_06230 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Xcom_06230 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Xcom_06255 PF00162 Phosphoglycerate kinase Xcom_06265 PF02887 Pyruvate kinase, alpha/beta domain Xcom_06265 PF00224 Pyruvate kinase, barrel domain Xcom_06275 PF00274 Fructose-bisphosphate aldolase class-I Xcom_06280 PF01661 Macro domain Xcom_06290 PF00291 Pyridoxal-phosphate dependent enzyme Xcom_06295 PF10414 Sirohaem synthase dimerisation region Xcom_06295 PF14824 Sirohaem biosynthesis protein central Xcom_06295 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Xcom_06300 PF03466 LysR substrate binding domain Xcom_06300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_06320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_06320 PF00512 His Kinase A (phospho-acceptor) domain Xcom_06320 PF01627 Hpt domain Xcom_06320 PF00072 Response regulator receiver domain Xcom_06340 PF01507 Phosphoadenosine phosphosulfate reductase family Xcom_06345 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Xcom_06345 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Xcom_06350 PF00258 Flavodoxin Xcom_06350 PF00175 Oxidoreductase NAD-binding domain Xcom_06350 PF00667 FAD binding domain Xcom_06355 PF01507 Phosphoadenosine phosphosulfate reductase family Xcom_06360 PF00009 Elongation factor Tu GTP binding domain Xcom_06370 PF00529 HlyD membrane-fusion protein of T1SS Xcom_06370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Xcom_06375 PF00873 AcrB/AcrD/AcrF family Xcom_06380 PF01433 Peptidase family M1 domain Xcom_06380 PF11838 ERAP1-like C-terminal domain Xcom_06390 PF00588 SpoU rRNA Methylase family Xcom_06390 PF08032 RNA 2'-O ribose methyltransferase substrate binding Xcom_06395 PF00135 Carboxylesterase family Xcom_06405 PF14508 Glycosyl-hydrolase 97 N-terminal Xcom_06405 PF10566 Glycoside hydrolase 97 Xcom_06405 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation Xcom_06410 PF02837 Glycosyl hydrolases family 2, sugar binding domain Xcom_06410 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain Xcom_06410 PF00703 Glycosyl hydrolases family 2 Xcom_06420 PF00356 Bacterial regulatory proteins, lacI family Xcom_06430 PF01741 Large-conductance mechanosensitive channel, MscL Xcom_06435 PF01557 Fumarylacetoacetate (FAA) hydrolase family Xcom_06455 PF03600 Citrate transporter Xcom_06455 PF02080 TrkA-C domain Xcom_06460 PF02390 Putative methyltransferase Xcom_06470 PF05690 Thiazole biosynthesis protein ThiG Xcom_06480 PF03797 Autotransporter beta-domain Xcom_06480 PF00657 GDSL-like Lipase/Acylhydrolase Xcom_06510 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Xcom_06510 PF00128 Alpha amylase, catalytic domain Xcom_06515 PF18030 RimK PreATP-grasp domain Xcom_06515 PF08443 RimK-like ATP-grasp domain Xcom_06525 PF00072 Response regulator receiver domain Xcom_06525 PF00486 Transcriptional regulatory protein, C terminal Xcom_06530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_06530 PF00512 His Kinase A (phospho-acceptor) domain Xcom_06530 PF00989 PAS fold Xcom_06530 PF11808 Phosphate regulon sensor protein PhoR Xcom_06550 PF01121 Dephospho-CoA kinase Xcom_06555 PF06750 Bacterial Peptidase A24 N-terminal domain Xcom_06555 PF01478 Type IV leader peptidase family Xcom_06560 PF00482 Type II secretion system (T2SS), protein F Xcom_06565 PF00114 Pilin (bacterial filament) Xcom_06565 PF07963 Prokaryotic N-terminal methylation motif Xcom_06570 PF07963 Prokaryotic N-terminal methylation motif Xcom_06570 PF00114 Pilin (bacterial filament) Xcom_06575 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Xcom_06575 PF00437 Type II/IV secretion system protein Xcom_06580 PF02954 Bacterial regulatory protein, Fis family Xcom_06580 PF00158 Sigma-54 interaction domain Xcom_06580 PF00072 Response regulator receiver domain Xcom_06585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_06585 PF00512 His Kinase A (phospho-acceptor) domain Xcom_06590 PF00549 CoA-ligase Xcom_06590 PF08442 ATP-grasp domain Xcom_06595 PF02629 CoA binding domain Xcom_06595 PF00549 CoA-ligase Xcom_06610 PF00795 Carbon-nitrogen hydrolase Xcom_06610 PF02540 NAD synthase Xcom_06620 PF13525 Outer membrane lipoprotein Xcom_06625 PF00849 RNA pseudouridylate synthase Xcom_06640 PF04134 Protein of unknown function, DUF393 Xcom_06645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_06645 PF02203 Tar ligand binding domain homologue Xcom_06645 PF00672 HAMP domain Xcom_06655 PF01011 PQQ enzyme repeat Xcom_06660 PF00982 Glycosyltransferase family 20 Xcom_06665 PF00723 Glycosyl hydrolases family 15 Xcom_06670 PF02358 Trehalose-phosphatase Xcom_06675 PF07715 TonB-dependent Receptor Plug Domain Xcom_06675 PF00593 TonB dependent receptor Xcom_06715 PF01541 GIY-YIG catalytic domain Xcom_06725 PF17871 AAA lid domain Xcom_06725 PF10431 C-terminal, D2-small domain, of ClpB protein Xcom_06725 PF00004 ATPase family associated with various cellular activities (AAA) Xcom_06725 PF07724 AAA domain (Cdc48 subfamily) Xcom_06725 PF02861 Clp amino terminal domain, pathogenicity island component Xcom_06730 PF00593 TonB dependent receptor Xcom_06730 PF07715 TonB-dependent Receptor Plug Domain Xcom_06745 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Xcom_06745 PF12557 Cob(I)alamin adenosyltransferase N terminal Xcom_06750 PF17113 Regulatory signalling modulator protein AmpE Xcom_06750 PF03186 CobD/Cbib protein Xcom_06760 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Xcom_06760 PF07685 CobB/CobQ-like glutamine amidotransferase domain Xcom_06765 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Xcom_06770 PF02277 Phosphoribosyltransferase Xcom_06780 PF02654 Cobalamin-5-phosphate synthase Xcom_06790 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Xcom_06790 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Xcom_06800 PF07690 Major Facilitator Superfamily Xcom_06805 PF04183 IucA / IucC family Xcom_06805 PF06276 Ferric iron reductase FhuF-like transporter Xcom_06815 PF00593 TonB dependent receptor Xcom_06815 PF07715 TonB-dependent Receptor Plug Domain Xcom_06815 PF07660 Secretin and TonB N terminus short domain Xcom_06825 PF02254 TrkA-N domain Xcom_06825 PF00999 Sodium/hydrogen exchanger family Xcom_06835 PF00067 Cytochrome P450 Xcom_06865 PF00593 TonB dependent receptor Xcom_06865 PF07715 TonB-dependent Receptor Plug Domain Xcom_06885 PF00005 ABC transporter Xcom_06885 PF12848 ABC transporter Xcom_06895 PF03466 LysR substrate binding domain Xcom_06895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_06905 PF07859 alpha/beta hydrolase fold Xcom_06905 PF13472 GDSL-like Lipase/Acylhydrolase family Xcom_06910 PF05506 Domain of unknown function (DUF756) Xcom_06910 PF04185 Phosphoesterase family Xcom_06925 PF07690 Major Facilitator Superfamily Xcom_06940 PF01336 OB-fold nucleic acid binding domain Xcom_06940 PF00152 tRNA synthetases class II (D, K and N) Xcom_06940 PF02938 GAD domain Xcom_06955 PF01709 Transcriptional regulator Xcom_06960 PF02075 Crossover junction endodeoxyribonuclease RuvC Xcom_06965 PF07499 RuvA, C-terminal domain Xcom_06965 PF01330 RuvA N terminal domain Xcom_06970 PF02705 K+ potassium transporter Xcom_06980 PF17864 RuvB AAA lid domain Xcom_06980 PF05491 RuvB C-terminal winged helix domain Xcom_06980 PF05496 Holliday junction DNA helicase RuvB P-loop domain Xcom_06985 PF03061 Thioesterase superfamily Xcom_06990 PF01618 MotA/TolQ/ExbB proton channel family Xcom_06995 PF02472 Biopolymer transport protein ExbD/TolR Xcom_07005 PF04052 TolB amino-terminal domain Xcom_07005 PF07676 WD40-like Beta Propeller Repeat Xcom_07010 PF00691 OmpA family Xcom_07020 PF04055 Radical SAM superfamily Xcom_07030 PF06508 Queuosine biosynthesis protein QueC Xcom_07035 PF07536 HWE histidine kinase Xcom_07035 PF13426 PAS domain Xcom_07035 PF13581 Histidine kinase-like ATPase domain Xcom_07055 PF00672 HAMP domain Xcom_07055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_07055 PF02203 Tar ligand binding domain homologue Xcom_07070 PF01479 S4 domain Xcom_07070 PF00849 RNA pseudouridylate synthase Xcom_07105 PF00570 HRDC domain Xcom_07105 PF00270 DEAD/DEAH box helicase Xcom_07105 PF09382 RQC domain Xcom_07105 PF16124 RecQ zinc-binding Xcom_07105 PF00271 Helicase conserved C-terminal domain Xcom_07110 PF00210 Ferritin-like domain Xcom_07115 PF00271 Helicase conserved C-terminal domain Xcom_07115 PF04408 Helicase associated domain (HA2) Xcom_07115 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Xcom_07115 PF11898 Domain of unknown function (DUF3418) Xcom_07115 PF00270 DEAD/DEAH box helicase Xcom_07125 PF02685 Glucokinase Xcom_07145 PF13186 Iron-sulfur cluster-binding domain Xcom_07145 PF04055 Radical SAM superfamily Xcom_07150 PF05402 Coenzyme PQQ synthesis protein D (PqqD) Xcom_07155 PF03070 TENA/THI-4/PQQC family Xcom_07160 PF12706 Beta-lactamase superfamily domain Xcom_07165 PF08042 PqqA family Xcom_07170 PF13291 ACT domain Xcom_07170 PF02824 TGS domain Xcom_07170 PF04607 Region found in RelA / SpoT proteins Xcom_07185 PF00535 Glycosyl transferase family 2 Xcom_07190 PF14814 Bifunctional transglycosylase second domain Xcom_07190 PF00912 Transglycosylase Xcom_07190 PF00905 Penicillin binding protein transpeptidase domain Xcom_07200 PF13307 Helicase C-terminal domain Xcom_07200 PF04851 Type III restriction enzyme, res subunit Xcom_07205 PF00814 Glycoprotease family Xcom_07225 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Xcom_07225 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Xcom_07230 PF00072 Response regulator receiver domain Xcom_07235 PF00072 Response regulator receiver domain Xcom_07245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_07245 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Xcom_07250 PF00072 Response regulator receiver domain Xcom_07250 PF01627 Hpt domain Xcom_07250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_07250 PF01584 CheW-like domain Xcom_07265 PF13302 Acetyltransferase (GNAT) domain Xcom_07280 PF04542 Sigma-70 region 2 Xcom_07280 PF08281 Sigma-70, region 4 Xcom_07285 PF12034 Domain of unknown function (DUF3520) Xcom_07285 PF12450 von Willebrand factor Xcom_07285 PF00092 von Willebrand factor type A domain Xcom_07290 PF01112 Asparaginase Xcom_07295 PF03932 CutC family Xcom_07330 PF01301 Glycosyl hydrolases family 35 Xcom_07335 PF17678 Glycosyl hydrolase family 92 N-terminal domain Xcom_07335 PF07971 Glycosyl hydrolase family 92 Xcom_07345 PF07691 PA14 domain Xcom_07345 PF14310 Fibronectin type III-like domain Xcom_07345 PF00933 Glycosyl hydrolase family 3 N terminal domain Xcom_07345 PF01915 Glycosyl hydrolase family 3 C-terminal domain Xcom_07360 PF00704 Glycosyl hydrolases family 18 Xcom_07360 PF01476 LysM domain Xcom_07375 PF02685 Glucokinase Xcom_07380 PF04452 RNA methyltransferase Xcom_07385 PF00202 Aminotransferase class-III Xcom_07390 PF00293 NUDIX domain Xcom_07395 PF00459 Inositol monophosphatase family Xcom_07400 PF03819 MazG nucleotide pyrophosphohydrolase domain Xcom_07405 PF02694 Uncharacterised BCR, YnfA/UPF0060 family Xcom_07420 PF01571 Aminomethyltransferase folate-binding domain Xcom_07420 PF08669 Glycine cleavage T-protein C-terminal barrel domain Xcom_07425 PF01597 Glycine cleavage H-protein Xcom_07450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Xcom_07450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Xcom_07450 PF09317 Domain of unknown function (DUF1974) Xcom_07455 PF00561 alpha/beta hydrolase fold Xcom_07460 PF00440 Bacterial regulatory proteins, tetR family Xcom_07465 PF00593 TonB dependent receptor Xcom_07465 PF07715 TonB-dependent Receptor Plug Domain Xcom_07475 PF01430 Hsp33 protein Xcom_07480 PF00912 Transglycosylase Xcom_07485 PF00535 Glycosyl transferase family 2 Xcom_07490 PF00571 CBS domain Xcom_07490 PF00478 IMP dehydrogenase / GMP reductase domain Xcom_07495 PF05170 AsmA family Xcom_07500 PF03006 Haemolysin-III related Xcom_07505 PF16658 Class II release factor RF3, C-terminal domain Xcom_07505 PF00009 Elongation factor Tu GTP binding domain Xcom_07510 PF01551 Peptidase family M23 Xcom_07510 PF08525 Opacity-associated protein A N-terminal motif Xcom_07510 PF01476 LysM domain Xcom_07520 PF01053 Cys/Met metabolism PLP-dependent enzyme Xcom_07525 PF03447 Homoserine dehydrogenase, NAD binding domain Xcom_07525 PF00696 Amino acid kinase family Xcom_07525 PF00742 Homoserine dehydrogenase Xcom_07535 PF00561 alpha/beta hydrolase fold Xcom_07540 PF03315 Serine dehydratase beta chain Xcom_07540 PF03313 Serine dehydratase alpha chain Xcom_07560 PF04264 YceI-like domain Xcom_07565 PF00072 Response regulator receiver domain Xcom_07565 PF01627 Hpt domain Xcom_07565 PF00512 His Kinase A (phospho-acceptor) domain Xcom_07565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_07570 PF00072 Response regulator receiver domain Xcom_07570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_07570 PF00672 HAMP domain Xcom_07570 PF17149 Periplasmic sensor domain found in signal transduction proteins Xcom_07570 PF01627 Hpt domain Xcom_07570 PF00512 His Kinase A (phospho-acceptor) domain Xcom_07575 PF17149 Periplasmic sensor domain found in signal transduction proteins Xcom_07575 PF00672 HAMP domain Xcom_07575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_07575 PF00512 His Kinase A (phospho-acceptor) domain Xcom_07575 PF01627 Hpt domain Xcom_07575 PF00072 Response regulator receiver domain Xcom_07580 PF17149 Periplasmic sensor domain found in signal transduction proteins Xcom_07580 PF00672 HAMP domain Xcom_07580 PF00512 His Kinase A (phospho-acceptor) domain Xcom_07580 PF01627 Hpt domain Xcom_07580 PF00072 Response regulator receiver domain Xcom_07580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_07585 PF07690 Major Facilitator Superfamily Xcom_07590 PF01208 Uroporphyrinogen decarboxylase (URO-D) Xcom_07600 PF01761 3-dehydroquinate synthase Xcom_07605 PF01202 Shikimate kinase Xcom_07610 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Xcom_07610 PF01243 Pyridoxamine 5'-phosphate oxidase Xcom_07620 PF04012 PspA/IM30 family Xcom_07645 PF03738 Glutathionylspermidine synthase preATP-grasp Xcom_07650 PF07690 Major Facilitator Superfamily Xcom_07655 PF09278 MerR, DNA binding Xcom_07655 PF00376 MerR family regulatory protein Xcom_07700 PF12706 Beta-lactamase superfamily domain Xcom_07735 PF00324 Amino acid permease Xcom_07740 PF00196 Bacterial regulatory proteins, luxR family Xcom_07750 PF00561 alpha/beta hydrolase fold Xcom_07770 PF00544 Pectate lyase Xcom_07775 PF00324 Amino acid permease Xcom_07785 PF01654 Cytochrome bd terminal oxidase subunit I Xcom_07790 PF02322 Cytochrome bd terminal oxidase subunit II Xcom_07795 PF00756 Putative esterase Xcom_07800 PF00571 CBS domain Xcom_07800 PF03448 MgtE intracellular N domain Xcom_07800 PF01769 Divalent cation transporter Xcom_07810 PF05524 PEP-utilising enzyme, N-terminal Xcom_07810 PF02896 PEP-utilising enzyme, TIM barrel domain Xcom_07810 PF00391 PEP-utilising enzyme, mobile domain Xcom_07815 PF00381 PTS HPr component phosphorylation site Xcom_07825 PF03668 P-loop ATPase protein family Xcom_07830 PF07475 HPr Serine kinase C-terminal domain Xcom_07830 PF02603 HPr Serine kinase N terminus Xcom_07835 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Xcom_07840 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Xcom_07845 PF00309 Sigma-54 factor, Activator interacting domain (AID) Xcom_07845 PF04552 Sigma-54, DNA binding domain Xcom_07845 PF04963 Sigma-54 factor, core binding domain Xcom_07850 PF00005 ABC transporter Xcom_07855 PF03968 OstA-like protein Xcom_07870 PF01380 SIS domain Xcom_07870 PF00571 CBS domain Xcom_07875 PF01722 BolA-like protein Xcom_07880 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Xcom_07900 PF00551 Formyl transferase Xcom_07910 PF00586 AIR synthase related protein, N-terminal domain Xcom_07910 PF02769 AIR synthase related protein, C-terminal domain Xcom_07920 PF01594 AI-2E family transporter Xcom_07925 PF00308 Bacterial dnaA protein Xcom_07930 PF00483 Nucleotidyl transferase Xcom_07935 PF01636 Phosphotransferase enzyme family Xcom_07965 PF00667 FAD binding domain Xcom_07965 PF00175 Oxidoreductase NAD-binding domain Xcom_07965 PF00258 Flavodoxin Xcom_07970 PF02424 ApbE family Xcom_07995 PF13640 2OG-Fe(II) oxygenase superfamily Xcom_07995 PF18331 PKHD-type hydroxylase C-terminal domain Xcom_08000 PF00593 TonB dependent receptor Xcom_08000 PF07715 TonB-dependent Receptor Plug Domain Xcom_08005 PF00355 Rieske [2Fe-2S] domain Xcom_08010 PF00583 Acetyltransferase (GNAT) family Xcom_08015 PF00266 Aminotransferase class-V Xcom_08020 PF01458 Uncharacterized protein family (UPF0051) Xcom_08025 PF00005 ABC transporter Xcom_08030 PF01458 Uncharacterized protein family (UPF0051) Xcom_08035 PF02082 Transcriptional regulator Xcom_08045 PF01965 DJ-1/PfpI family Xcom_08065 PF01551 Peptidase family M23 Xcom_08075 PF03807 NADP oxidoreductase coenzyme F420-dependent Xcom_08075 PF14748 Pyrroline-5-carboxylate reductase dimerisation Xcom_08080 PF01168 Alanine racemase, N-terminal domain Xcom_08085 PF00437 Type II/IV secretion system protein Xcom_08090 PF00437 Type II/IV secretion system protein Xcom_08110 PF03352 Methyladenine glycosylase Xcom_08110 PF00117 Glutamine amidotransferase class-I Xcom_08110 PF00958 GMP synthase C terminal domain Xcom_08110 PF13302 Acetyltransferase (GNAT) domain Xcom_08110 PF13673 Acetyltransferase (GNAT) domain Xcom_08120 PF02622 Uncharacterized ACR, COG1678 Xcom_08125 PF03652 Holliday junction resolvase Xcom_08130 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Xcom_08130 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Xcom_08135 PF02566 OsmC-like protein Xcom_08145 PF02567 Phenazine biosynthesis-like protein Xcom_08150 PF02567 Phenazine biosynthesis-like protein Xcom_08155 PF00696 Amino acid kinase family Xcom_08155 PF01842 ACT domain Xcom_08170 PF08245 Mur ligase middle domain Xcom_08170 PF02875 Mur ligase family, glutamate ligase domain Xcom_08185 PF00348 Polyprenyl synthetase Xcom_08190 PF00436 Single-strand binding protein family Xcom_08195 PF00990 Diguanylate cyclase, GGDEF domain Xcom_08195 PF00360 Phytochrome region Xcom_08195 PF00563 EAL domain Xcom_08195 PF01590 GAF domain Xcom_08200 PF16197 Ketoacyl-synthetase C-terminal extension Xcom_08200 PF00109 Beta-ketoacyl synthase, N-terminal domain Xcom_08200 PF02801 Beta-ketoacyl synthase, C-terminal domain Xcom_08200 PF00107 Zinc-binding dehydrogenase Xcom_08200 PF00550 Phosphopantetheine attachment site Xcom_08200 PF14765 Polyketide synthase dehydratase Xcom_08200 PF08240 Alcohol dehydrogenase GroES-like domain Xcom_08200 PF00698 Acyl transferase domain Xcom_08200 PF08659 KR domain Xcom_08205 PF00111 2Fe-2S iron-sulfur cluster binding domain Xcom_08205 PF01799 [2Fe-2S] binding domain Xcom_08205 PF10518 TAT (twin-arginine translocation) pathway signal sequence Xcom_08210 PF03450 CO dehydrogenase flavoprotein C-terminal domain Xcom_08210 PF00941 FAD binding domain in molybdopterin dehydrogenase Xcom_08215 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Xcom_08215 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Xcom_08220 PF13478 XdhC Rossmann domain Xcom_08220 PF02625 XdhC and CoxI family Xcom_08265 PF04328 Selenoprotein, putative Xcom_08275 PF02678 Pirin Xcom_08275 PF05726 Pirin C-terminal cupin domain Xcom_08290 PF02678 Pirin Xcom_08290 PF05726 Pirin C-terminal cupin domain Xcom_08305 PF04493 Endonuclease V Xcom_08310 PF00300 Histidine phosphatase superfamily (branch 1) Xcom_08320 PF01431 Peptidase family M13 Xcom_08320 PF05649 Peptidase family M13 Xcom_08325 PF13091 PLD-like domain Xcom_08330 PF00072 Response regulator receiver domain Xcom_08330 PF01339 CheB methylesterase Xcom_08335 PF03705 CheR methyltransferase, all-alpha domain Xcom_08335 PF01739 CheR methyltransferase, SAM binding domain Xcom_08340 PF13426 PAS domain Xcom_08340 PF00990 Diguanylate cyclase, GGDEF domain Xcom_08340 PF00563 EAL domain Xcom_08345 PF01584 CheW-like domain Xcom_08350 PF02203 Tar ligand binding domain homologue Xcom_08350 PF00672 HAMP domain Xcom_08350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_08355 PF01584 CheW-like domain Xcom_08355 PF09078 CheY binding Xcom_08355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_08355 PF01627 Hpt domain Xcom_08355 PF02895 Signal transducing histidine kinase, homodimeric domain Xcom_08365 PF00270 DEAD/DEAH box helicase Xcom_08365 PF03461 TRCF domain Xcom_08365 PF02559 CarD-like/TRCF domain Xcom_08365 PF17757 UvrB interaction domain Xcom_08365 PF00271 Helicase conserved C-terminal domain Xcom_08380 PF00072 Response regulator receiver domain Xcom_08380 PF00486 Transcriptional regulatory protein, C terminal Xcom_08385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_08385 PF00512 His Kinase A (phospho-acceptor) domain Xcom_08385 PF00672 HAMP domain Xcom_08395 PF06123 Inner membrane protein CreD Xcom_08420 PF00749 tRNA synthetases class I (E and Q), catalytic domain Xcom_08425 PF01475 Ferric uptake regulator family Xcom_08435 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Xcom_08435 PF00529 HlyD membrane-fusion protein of T1SS Xcom_08440 PF00873 AcrB/AcrD/AcrF family Xcom_08445 PF02321 Outer membrane efflux protein Xcom_08450 PF00440 Bacterial regulatory proteins, tetR family Xcom_08450 PF16859 Tetracyclin repressor-like, C-terminal domain Xcom_08455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_08455 PF03466 LysR substrate binding domain Xcom_08465 PF12833 Helix-turn-helix domain Xcom_08465 PF06719 AraC-type transcriptional regulator N-terminus Xcom_08475 PF03466 LysR substrate binding domain Xcom_08475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_08485 PF00248 Aldo/keto reductase family Xcom_08495 PF01483 Proprotein convertase P-domain Xcom_08495 PF00082 Subtilase family Xcom_08505 PF00082 Subtilase family Xcom_08505 PF01483 Proprotein convertase P-domain Xcom_08515 PF00593 TonB dependent receptor Xcom_08515 PF07715 TonB-dependent Receptor Plug Domain Xcom_08535 PF00654 Voltage gated chloride channel Xcom_08550 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Xcom_08550 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Xcom_08595 PF04539 Sigma-70 region 3 Xcom_08595 PF04545 Sigma-70, region 4 Xcom_08595 PF04542 Sigma-70 region 2 Xcom_08600 PF03880 DbpA RNA binding domain Xcom_08600 PF00271 Helicase conserved C-terminal domain Xcom_08600 PF00270 DEAD/DEAH box helicase Xcom_08605 PF08448 PAS fold Xcom_08605 PF00990 Diguanylate cyclase, GGDEF domain Xcom_08605 PF00563 EAL domain Xcom_08610 PF01479 S4 domain Xcom_08610 PF00849 RNA pseudouridylate synthase Xcom_08615 PF08448 PAS fold Xcom_08615 PF00990 Diguanylate cyclase, GGDEF domain Xcom_08635 PF03737 Aldolase/RraA Xcom_08640 PF00144 Beta-lactamase Xcom_08645 PF00999 Sodium/hydrogen exchanger family Xcom_08650 PF00512 His Kinase A (phospho-acceptor) domain Xcom_08650 PF00672 HAMP domain Xcom_08650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_08655 PF00486 Transcriptional regulatory protein, C terminal Xcom_08655 PF00072 Response regulator receiver domain Xcom_08660 PF02321 Outer membrane efflux protein Xcom_08675 PF00873 AcrB/AcrD/AcrF family Xcom_08685 PF00664 ABC transporter transmembrane region Xcom_08685 PF00005 ABC transporter Xcom_08715 PF01022 Bacterial regulatory protein, arsR family Xcom_08720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_08720 PF03466 LysR substrate binding domain Xcom_08730 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Xcom_08735 PF04070 Domain of unknown function (DUF378) Xcom_08770 PF00085 Thioredoxin Xcom_08780 PF13603 Leucyl-tRNA synthetase, Domain 2 Xcom_08780 PF08264 Anticodon-binding domain of tRNA Xcom_08780 PF00133 tRNA synthetases class I (I, L, M and V) Xcom_08810 PF02590 Predicted SPOUT methyltransferase Xcom_08825 PF04402 Protein of unknown function (DUF541) Xcom_08830 PF02545 Maf-like protein Xcom_08835 PF10150 Ribonuclease E/G family Xcom_08835 PF00575 S1 RNA binding domain Xcom_08840 PF13502 AsmA-like C-terminal region Xcom_08840 PF13116 Protein of unknown function Xcom_08850 PF01523 Putative modulator of DNA gyrase Xcom_08855 PF04751 Protein of unknown function (DUF615) Xcom_08860 PF01523 Putative modulator of DNA gyrase Xcom_08870 PF14521 Lysine-specific metallo-endopeptidase Xcom_08875 PF00348 Polyprenyl synthetase Xcom_08880 PF02609 Exonuclease VII small subunit Xcom_08885 PF11734 TilS substrate C-terminal domain Xcom_08885 PF09179 TilS substrate binding domain Xcom_08885 PF01171 PP-loop family Xcom_08895 PF00245 Alkaline phosphatase Xcom_08900 PF00375 Sodium:dicarboxylate symporter family Xcom_08905 PF13649 Methyltransferase domain Xcom_08915 PF00877 NlpC/P60 family Xcom_08920 PF00877 NlpC/P60 family Xcom_08925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Xcom_08930 PF04235 Protein of unknown function (DUF418) Xcom_08935 PF01266 FAD dependent oxidoreductase Xcom_08940 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Xcom_08940 PF07992 Pyridine nucleotide-disulphide oxidoreductase Xcom_08960 PF05649 Peptidase family M13 Xcom_08960 PF01431 Peptidase family M13 Xcom_08970 PF01431 Peptidase family M13 Xcom_08970 PF05649 Peptidase family M13 Xcom_08990 PF10609 NUBPL iron-transfer P-loop NTPase Xcom_09000 PF00692 dUTPase Xcom_09020 PF01738 Dienelactone hydrolase family Xcom_09025 PF04055 Radical SAM superfamily Xcom_09025 PF18693 TRAM domain Xcom_09025 PF00919 Uncharacterized protein family UPF0004 Xcom_09030 PF03449 Transcription elongation factor, N-terminal Xcom_09030 PF01272 Transcription elongation factor, GreA/GreB, C-term Xcom_09050 PF00293 NUDIX domain Xcom_09055 PF05872 Bacterial protein of unknown function (DUF853) Xcom_09065 PF02666 Phosphatidylserine decarboxylase Xcom_09070 PF02630 SCO1/SenC Xcom_09075 PF05175 Methyltransferase small domain Xcom_09080 PF01264 Chorismate synthase Xcom_09085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Xcom_09085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Xcom_09090 PF02774 Semialdehyde dehydrogenase, dimerisation domain Xcom_09090 PF01118 Semialdehyde dehydrogenase, NAD binding domain Xcom_09105 PF01416 tRNA pseudouridine synthase Xcom_09110 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Xcom_09115 PF03466 LysR substrate binding domain Xcom_09115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_09120 PF00291 Pyridoxal-phosphate dependent enzyme Xcom_09130 PF00290 Tryptophan synthase alpha chain Xcom_09135 PF17848 Acetyl-coA carboxylase zinc finger domain Xcom_09135 PF01039 Carboxyl transferase domain Xcom_09140 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Xcom_09140 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Xcom_09140 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Xcom_09140 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Xcom_09155 PF03707 Bacterial signalling protein N terminal repeat Xcom_09155 PF00563 EAL domain Xcom_09155 PF00990 Diguanylate cyclase, GGDEF domain Xcom_09185 PF00106 short chain dehydrogenase Xcom_09190 PF00121 Triosephosphate isomerase Xcom_09205 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Xcom_09210 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Xcom_09215 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Xcom_09220 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Xcom_09230 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Xcom_09230 PF10531 SLBB domain Xcom_09230 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Xcom_09235 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal Xcom_09235 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Xcom_09235 PF00384 Molybdopterin oxidoreductase Xcom_09240 PF00146 NADH dehydrogenase Xcom_09245 PF12838 4Fe-4S dicluster domain Xcom_09250 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Xcom_09255 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Xcom_09260 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Xcom_09260 PF00361 Proton-conducting membrane transporter Xcom_09265 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus Xcom_09265 PF00361 Proton-conducting membrane transporter Xcom_09270 PF00361 Proton-conducting membrane transporter Xcom_09280 PF17384 RimP C-terminal SH3 domain Xcom_09280 PF02576 RimP N-terminal domain Xcom_09285 PF00575 S1 RNA binding domain Xcom_09285 PF13184 NusA-like KH domain Xcom_09285 PF08529 NusA N-terminal domain Xcom_09290 PF08364 Bacterial translation initiation factor IF-2 associated region Xcom_09290 PF11987 Translation-initiation factor 2 Xcom_09290 PF04760 Translation initiation factor IF-2, N-terminal region Xcom_09290 PF00009 Elongation factor Tu GTP binding domain Xcom_09295 PF02033 Ribosome-binding factor A Xcom_09300 PF16198 tRNA pseudouridylate synthase B C-terminal domain Xcom_09300 PF09157 Pseudouridine synthase II TruB, C-terminal Xcom_09300 PF01509 TruB family pseudouridylate synthase (N terminal domain) Xcom_09305 PF00312 Ribosomal protein S15 Xcom_09310 PF00575 S1 RNA binding domain Xcom_09310 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Xcom_09310 PF01138 3' exoribonuclease family, domain 1 Xcom_09310 PF03725 3' exoribonuclease family, domain 2 Xcom_09310 PF00013 KH domain Xcom_09320 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Xcom_09320 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Xcom_09330 PF00731 AIR carboxylase Xcom_09335 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Xcom_09335 PF02222 ATP-grasp domain Xcom_09340 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Xcom_09340 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Xcom_09345 PF00462 Glutaredoxin Xcom_09355 PF01914 MarC family integral membrane protein Xcom_09365 PF00593 TonB dependent receptor Xcom_09370 PF03641 Possible lysine decarboxylase Xcom_09370 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases Xcom_09370 PF11892 Domain of unknown function (DUF3412) Xcom_09375 PF00114 Pilin (bacterial filament) Xcom_09375 PF07963 Prokaryotic N-terminal methylation motif Xcom_09395 PF05567 Neisseria PilC beta-propeller domain Xcom_09415 PF02151 UvrB/uvrC motif Xcom_09415 PF04851 Type III restriction enzyme, res subunit Xcom_09415 PF00271 Helicase conserved C-terminal domain Xcom_09415 PF12344 Ultra-violet resistance protein B Xcom_09415 PF17757 UvrB interaction domain Xcom_09435 PF02534 Type IV secretory system Conjugative DNA transfer Xcom_09455 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation Xcom_09455 PF10566 Glycoside hydrolase 97 Xcom_09455 PF14508 Glycosyl-hydrolase 97 N-terminal Xcom_09465 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Xcom_09470 PF00686 Starch binding domain Xcom_09470 PF00128 Alpha amylase, catalytic domain Xcom_09475 PF00356 Bacterial regulatory proteins, lacI family Xcom_09480 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Xcom_09480 PF03129 Anticodon binding domain Xcom_09480 PF02824 TGS domain Xcom_09480 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Xcom_09485 PF05198 Translation initiation factor IF-3, N-terminal domain Xcom_09485 PF00707 Translation initiation factor IF-3, C-terminal domain Xcom_09490 PF01632 Ribosomal protein L35 Xcom_09495 PF00453 Ribosomal protein L20 Xcom_09500 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Xcom_09500 PF01409 tRNA synthetases class II core domain (F) Xcom_09505 PF03484 tRNA synthetase B5 domain Xcom_09505 PF03483 B3/4 domain Xcom_09505 PF01588 Putative tRNA binding domain Xcom_09505 PF03147 Ferredoxin-fold anticodon binding domain Xcom_09505 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Xcom_09510 PF00216 Bacterial DNA-binding protein Xcom_09515 PF13411 MerR HTH family regulatory protein Xcom_09535 PF02397 Bacterial sugar transferase Xcom_09555 PF13439 Glycosyltransferase Family 4 Xcom_09555 PF00534 Glycosyl transferases group 1 Xcom_09565 PF14667 Polysaccharide biosynthesis C-terminal domain Xcom_09580 PF03808 Glycosyl transferase WecB/TagA/CpsF family Xcom_09595 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Xcom_09595 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Xcom_09600 PF00753 Metallo-beta-lactamase superfamily Xcom_09600 PF16123 Hydroxyacylglutathione hydrolase C-terminus Xcom_09605 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family Xcom_09625 PF02780 Transketolase, C-terminal domain Xcom_09625 PF02779 Transketolase, pyrimidine binding domain Xcom_09625 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Xcom_09635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Xcom_09635 PF02770 Acyl-CoA dehydrogenase, middle domain Xcom_09635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Xcom_09635 PF12806 Acetyl-CoA dehydrogenase C-terminal like Xcom_09645 PF08212 Lipocalin-like domain Xcom_09675 PF13426 PAS domain Xcom_09675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_09675 PF00072 Response regulator receiver domain Xcom_09685 PF04362 Bacterial Fe(2+) trafficking Xcom_09690 PF10576 Iron-sulfur binding domain of endonuclease III Xcom_09690 PF00730 HhH-GPD superfamily base excision DNA repair protein Xcom_09690 PF14815 NUDIX domain Xcom_09690 PF00633 Helix-hairpin-helix motif Xcom_09700 PF02881 SRP54-type protein, helical bundle domain Xcom_09700 PF00448 SRP54-type protein, GTPase domain Xcom_09710 PF05544 Proline racemase Xcom_09715 PF01266 FAD dependent oxidoreductase Xcom_09725 PF07992 Pyridine nucleotide-disulphide oxidoreductase Xcom_09725 PF04324 BFD-like [2Fe-2S] binding domain Xcom_09730 PF00701 Dihydrodipicolinate synthetase family Xcom_09735 PF00171 Aldehyde dehydrogenase family Xcom_09740 PF00557 Metallopeptidase family M24 Xcom_09740 PF01321 Creatinase/Prolidase N-terminal domain Xcom_09755 PF13520 Amino acid permease Xcom_09790 PF00593 TonB dependent receptor Xcom_09790 PF07715 TonB-dependent Receptor Plug Domain Xcom_09800 PF07532 Bacterial Ig-like domain (group 4) Xcom_09805 PF04616 Glycosyl hydrolases family 43 Xcom_09815 PF00593 TonB dependent receptor Xcom_09815 PF07715 TonB-dependent Receptor Plug Domain Xcom_09835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_09835 PF00183 Hsp90 protein Xcom_09845 PF01467 Cytidylyltransferase-like Xcom_09860 PF00037 4Fe-4S binding domain Xcom_09870 PF00759 Glycosyl hydrolase family 9 Xcom_09870 PF02927 Cellulase N-terminal ig-like domain Xcom_09915 PF02547 Queuosine biosynthesis protein Xcom_09920 PF01702 Queuine tRNA-ribosyltransferase Xcom_09925 PF02699 Preprotein translocase subunit Xcom_09930 PF02355 Protein export membrane protein Xcom_09930 PF13721 SecD export protein N-terminal TM region Xcom_09930 PF07549 SecD/SecF GG Motif Xcom_09935 PF07549 SecD/SecF GG Motif Xcom_09935 PF02355 Protein export membrane protein Xcom_09960 PF00942 Cellulose binding domain Xcom_09960 PF03442 Carbohydrate binding domain X2 Xcom_09975 PF01055 Glycosyl hydrolases family 31 Xcom_09975 PF17137 Domain of unknown function (DUF5110) Xcom_09975 PF16338 Domain of unknown function (DUF4968) Xcom_09985 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Xcom_09985 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Xcom_09995 PF00083 Sugar (and other) transporter Xcom_10015 PF01520 N-acetylmuramoyl-L-alanine amidase Xcom_10020 PF02649 Type I GTP cyclohydrolase folE2 Xcom_10030 PF01743 Poly A polymerase head domain Xcom_10030 PF12626 Polymerase A arginine-rich C-terminus Xcom_10030 PF12627 Probable RNA and SrmB- binding site of polymerase A Xcom_10035 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Xcom_10040 PF02548 Ketopantoate hydroxymethyltransferase Xcom_10045 PF02569 Pantoate-beta-alanine ligase Xcom_10050 PF02261 Aspartate decarboxylase Xcom_10055 PF00342 Phosphoglucose isomerase Xcom_10080 PF14310 Fibronectin type III-like domain Xcom_10080 PF01915 Glycosyl hydrolase family 3 C-terminal domain Xcom_10080 PF00933 Glycosyl hydrolase family 3 N terminal domain Xcom_10090 PF00474 Sodium:solute symporter family Xcom_10095 PF00990 Diguanylate cyclase, GGDEF domain Xcom_10095 PF00563 EAL domain Xcom_10095 PF01590 GAF domain Xcom_10095 PF00360 Phytochrome region Xcom_10105 PF02013 Cellulose or protein binding domain Xcom_10105 PF00150 Cellulase (glycosyl hydrolase family 5) Xcom_10110 PF00072 Response regulator receiver domain Xcom_10120 PF04551 GcpE protein Xcom_10125 PF01569 PAP2 superfamily Xcom_10130 PF07690 Major Facilitator Superfamily Xcom_10135 PF01177 Asp/Glu/Hydantoin racemase Xcom_10140 PF00892 EamA-like transporter family Xcom_10145 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Xcom_10145 PF01565 FAD binding domain Xcom_10150 PF01180 Dihydroorotate dehydrogenase Xcom_10170 PF00171 Aldehyde dehydrogenase family Xcom_10185 PF03073 TspO/MBR family Xcom_10190 PF00696 Amino acid kinase family Xcom_10190 PF01842 ACT domain Xcom_10190 PF00742 Homoserine dehydrogenase Xcom_10190 PF03447 Homoserine dehydrogenase, NAD binding domain Xcom_10190 PF13840 ACT domain Xcom_10195 PF00288 GHMP kinases N terminal domain Xcom_10195 PF08544 GHMP kinases C terminal Xcom_10205 PF14821 Threonine synthase N terminus Xcom_10205 PF00291 Pyridoxal-phosphate dependent enzyme Xcom_10215 PF00027 Cyclic nucleotide-binding domain Xcom_10215 PF13545 Crp-like helix-turn-helix domain Xcom_10220 PF03129 Anticodon binding domain Xcom_10220 PF13393 Histidyl-tRNA synthetase Xcom_10230 PF08029 HisG, C-terminal domain Xcom_10230 PF01634 ATP phosphoribosyltransferase Xcom_10235 PF00815 Histidinol dehydrogenase Xcom_10240 PF00155 Aminotransferase class I and II Xcom_10245 PF00475 Imidazoleglycerol-phosphate dehydratase Xcom_10250 PF00117 Glutamine amidotransferase class-I Xcom_10255 PF00977 Histidine biosynthesis protein Xcom_10260 PF00977 Histidine biosynthesis protein Xcom_10265 PF01502 Phosphoribosyl-AMP cyclohydrolase Xcom_10265 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Xcom_10285 PF03079 ARD/ARD' family Xcom_10290 PF00596 Class II Aldolase and Adducin N-terminal domain Xcom_10295 PF13520 Amino acid permease Xcom_10300 PF13520 Amino acid permease Xcom_10310 PF01842 ACT domain Xcom_10310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Xcom_10310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Xcom_10315 PF02913 FAD linked oxidases, C-terminal domain Xcom_10315 PF01565 FAD binding domain Xcom_10335 PF08207 Elongation factor P (EF-P) KOW-like domain Xcom_10335 PF09285 Elongation factor P, C-terminal Xcom_10335 PF01132 Elongation factor P (EF-P) OB domain Xcom_10340 PF00106 short chain dehydrogenase Xcom_10345 PF00682 HMGL-like Xcom_10355 PF00378 Enoyl-CoA hydratase/isomerase Xcom_10365 PF02421 Ferrous iron transport protein B Xcom_10365 PF07664 Ferrous iron transport protein B C terminus Xcom_10365 PF07670 Nucleoside recognition Xcom_10380 PF00155 Aminotransferase class I and II Xcom_10385 PF03475 3-alpha domain Xcom_10385 PF03473 MOSC domain Xcom_10395 PF01113 Dihydrodipicolinate reductase, N-terminus Xcom_10395 PF05173 Dihydrodipicolinate reductase, C-terminus Xcom_10400 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Xcom_10400 PF00117 Glutamine amidotransferase class-I Xcom_10410 PF02142 MGS-like domain Xcom_10410 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Xcom_10410 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Xcom_10415 PF01272 Transcription elongation factor, GreA/GreB, C-term Xcom_10415 PF03449 Transcription elongation factor, N-terminal Xcom_10425 PF17768 RecJ OB domain Xcom_10425 PF01368 DHH family Xcom_10425 PF02272 DHHA1 domain Xcom_10435 PF00072 Response regulator receiver domain Xcom_10435 PF04397 LytTr DNA-binding domain Xcom_10445 PF01336 OB-fold nucleic acid binding domain Xcom_10445 PF00152 tRNA synthetases class II (D, K and N) Xcom_10450 PF00072 Response regulator receiver domain Xcom_10455 PF01627 Hpt domain Xcom_10455 PF00512 His Kinase A (phospho-acceptor) domain Xcom_10455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_10455 PF00072 Response regulator receiver domain Xcom_10460 PF01627 Hpt domain Xcom_10460 PF00072 Response regulator receiver domain Xcom_10460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_10460 PF00512 His Kinase A (phospho-acceptor) domain Xcom_10465 PF00378 Enoyl-CoA hydratase/isomerase Xcom_10470 PF13193 AMP-binding enzyme C-terminal domain Xcom_10470 PF00501 AMP-binding enzyme Xcom_10485 PF00330 Aconitase family (aconitate hydratase) Xcom_10485 PF00694 Aconitase C-terminal domain Xcom_10500 PF11791 Aconitate B N-terminal domain Xcom_10500 PF00330 Aconitase family (aconitate hydratase) Xcom_10500 PF06434 Aconitate hydratase 2 N-terminus Xcom_10505 PF00561 alpha/beta hydrolase fold Xcom_10510 PF00563 EAL domain Xcom_10510 PF00990 Diguanylate cyclase, GGDEF domain Xcom_10510 PF03707 Bacterial signalling protein N terminal repeat Xcom_10515 PF00072 Response regulator receiver domain Xcom_10515 PF01339 CheB methylesterase Xcom_10520 PF03975 CheD chemotactic sensory transduction Xcom_10525 PF03705 CheR methyltransferase, all-alpha domain Xcom_10525 PF01739 CheR methyltransferase, SAM binding domain Xcom_10530 PF02203 Tar ligand binding domain homologue Xcom_10530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_10530 PF00672 HAMP domain Xcom_10540 PF01584 CheW-like domain Xcom_10545 PF07317 Flagellar regulator YcgR Xcom_10545 PF07238 PilZ domain Xcom_10555 PF02203 Tar ligand binding domain homologue Xcom_10555 PF00672 HAMP domain Xcom_10555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_10560 PF00672 HAMP domain Xcom_10560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_10560 PF02203 Tar ligand binding domain homologue Xcom_10565 PF00672 HAMP domain Xcom_10565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_10565 PF02203 Tar ligand binding domain homologue Xcom_10570 PF00672 HAMP domain Xcom_10570 PF02203 Tar ligand binding domain homologue Xcom_10570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_10575 PF00672 HAMP domain Xcom_10575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_10575 PF02203 Tar ligand binding domain homologue Xcom_10585 PF02203 Tar ligand binding domain homologue Xcom_10585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_10585 PF00672 HAMP domain Xcom_10590 PF00672 HAMP domain Xcom_10590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_10590 PF02203 Tar ligand binding domain homologue Xcom_10595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_10595 PF00672 HAMP domain Xcom_10595 PF02203 Tar ligand binding domain homologue Xcom_10600 PF00672 HAMP domain Xcom_10600 PF02203 Tar ligand binding domain homologue Xcom_10600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_10610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_10610 PF00672 HAMP domain Xcom_10610 PF02203 Tar ligand binding domain homologue Xcom_10615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_10615 PF00672 HAMP domain Xcom_10615 PF02203 Tar ligand binding domain homologue Xcom_10625 PF00672 HAMP domain Xcom_10625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_10630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_10635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_10635 PF02895 Signal transducing histidine kinase, homodimeric domain Xcom_10635 PF01627 Hpt domain Xcom_10635 PF09078 CheY binding Xcom_10635 PF01584 CheW-like domain Xcom_10640 PF00072 Response regulator receiver domain Xcom_10655 PF13614 AAA domain Xcom_10660 PF13677 Membrane MotB of proton-channel complex MotA/MotB Xcom_10660 PF00691 OmpA family Xcom_10665 PF01618 MotA/TolQ/ExbB proton channel family Xcom_10685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_10685 PF07194 P2 response regulator binding domain Xcom_10685 PF01627 Hpt domain Xcom_10685 PF01584 CheW-like domain Xcom_10685 PF02895 Signal transducing histidine kinase, homodimeric domain Xcom_10690 PF04344 Chemotaxis phosphatase, CheZ Xcom_10695 PF00072 Response regulator receiver domain Xcom_10700 PF04545 Sigma-70, region 4 Xcom_10700 PF04542 Sigma-70 region 2 Xcom_10700 PF04539 Sigma-70 region 3 Xcom_10705 PF10609 NUBPL iron-transfer P-loop NTPase Xcom_10710 PF00448 SRP54-type protein, GTPase domain Xcom_10715 PF00771 FHIPEP family Xcom_10720 PF01312 FlhB HrpN YscU SpaS Family Xcom_10725 PF03707 Bacterial signalling protein N terminal repeat Xcom_10725 PF00990 Diguanylate cyclase, GGDEF domain Xcom_10725 PF00563 EAL domain Xcom_10730 PF00990 Diguanylate cyclase, GGDEF domain Xcom_10730 PF13188 PAS domain Xcom_10730 PF03707 Bacterial signalling protein N terminal repeat Xcom_10730 PF00563 EAL domain Xcom_10740 PF00563 EAL domain Xcom_10740 PF13188 PAS domain Xcom_10740 PF00990 Diguanylate cyclase, GGDEF domain Xcom_10740 PF03707 Bacterial signalling protein N terminal repeat Xcom_10745 PF01311 Bacterial export proteins, family 1 Xcom_10750 PF01313 Bacterial export proteins, family 3 Xcom_10805 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Xcom_10805 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Xcom_10815 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Xcom_10820 PF00072 Response regulator receiver domain Xcom_10820 PF00158 Sigma-54 interaction domain Xcom_10820 PF02954 Bacterial regulatory protein, Fis family Xcom_10825 PF01339 CheB methylesterase Xcom_10825 PF00072 Response regulator receiver domain Xcom_10835 PF00072 Response regulator receiver domain Xcom_10835 PF00196 Bacterial regulatory proteins, luxR family Xcom_10850 PF02561 Flagellar protein FliS Xcom_10855 PF02465 Flagellar hook-associated protein 2 N-terminus Xcom_10855 PF07195 Flagellar hook-associated protein 2 C-terminus Xcom_10855 PF07196 Flagellin hook IN motif Xcom_10860 PF00700 Bacterial flagellin C-terminal helical region Xcom_10860 PF00669 Bacterial flagellin N-terminal helical region Xcom_10865 PF00669 Bacterial flagellin N-terminal helical region Xcom_10865 PF00700 Bacterial flagellin C-terminal helical region Xcom_10870 PF07196 Flagellin hook IN motif Xcom_10870 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Xcom_10875 PF10135 Rod binding protein Xcom_10875 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Xcom_10880 PF02119 Flagellar P-ring protein Xcom_10885 PF02107 Flagellar L-ring protein Xcom_10890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Xcom_10890 PF00460 Flagella basal body rod protein Xcom_10900 PF00460 Flagella basal body rod protein Xcom_10900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Xcom_10905 PF07559 Flagellar basal body protein FlaE Xcom_10905 PF00460 Flagella basal body rod protein Xcom_10905 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Xcom_10910 PF03963 Flagellar hook capping protein - N-terminal region Xcom_10915 PF00460 Flagella basal body rod protein Xcom_10915 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Xcom_10925 PF01584 CheW-like domain Xcom_10925 PF00072 Response regulator receiver domain Xcom_10945 PF13188 PAS domain Xcom_10945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_10945 PF00512 His Kinase A (phospho-acceptor) domain Xcom_10945 PF00989 PAS fold Xcom_10945 PF13426 PAS domain Xcom_10955 PF00563 EAL domain Xcom_10955 PF00990 Diguanylate cyclase, GGDEF domain Xcom_10955 PF03707 Bacterial signalling protein N terminal repeat Xcom_10960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_10960 PF07730 Histidine kinase Xcom_10965 PF03707 Bacterial signalling protein N terminal repeat Xcom_10965 PF00990 Diguanylate cyclase, GGDEF domain Xcom_10965 PF00563 EAL domain Xcom_10975 PF12729 Four helix bundle sensory module for signal transduction Xcom_10975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_10975 PF00672 HAMP domain Xcom_10980 PF04356 Protein of unknown function (DUF489) Xcom_10990 PF00293 NUDIX domain Xcom_10995 PF02617 ATP-dependent Clp protease adaptor protein ClpS Xcom_11000 PF02861 Clp amino terminal domain, pathogenicity island component Xcom_11000 PF00004 ATPase family associated with various cellular activities (AAA) Xcom_11000 PF10431 C-terminal, D2-small domain, of ClpB protein Xcom_11000 PF07724 AAA domain (Cdc48 subfamily) Xcom_11000 PF17871 AAA lid domain Xcom_11005 PF01176 Translation initiation factor 1A / IF-1 Xcom_11010 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Xcom_11025 PF07992 Pyridine nucleotide-disulphide oxidoreductase Xcom_11030 PF01580 FtsK/SpoIIIE family Xcom_11030 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Xcom_11030 PF17854 FtsK alpha domain Xcom_11030 PF09397 Ftsk gamma domain Xcom_11040 PF03548 Outer membrane lipoprotein carrier protein LolA Xcom_11055 PF00004 ATPase family associated with various cellular activities (AAA) Xcom_11055 PF12002 MgsA AAA+ ATPase C terminal Xcom_11055 PF16193 AAA C-terminal domain Xcom_11060 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Xcom_11065 PF00108 Thiolase, N-terminal domain Xcom_11065 PF02803 Thiolase, C-terminal domain Xcom_11070 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Xcom_11070 PF00378 Enoyl-CoA hydratase/isomerase Xcom_11070 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Xcom_11080 PF00334 Nucleoside diphosphate kinase Xcom_11085 PF04055 Radical SAM superfamily Xcom_11095 PF13464 Domain of unknown function (DUF4115) Xcom_11105 PF13360 PQQ-like domain Xcom_11105 PF01011 PQQ enzyme repeat Xcom_11110 PF01926 50S ribosome-binding GTPase Xcom_11110 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Xcom_11115 PF00994 Probable molybdopterin binding domain Xcom_11115 PF03454 MoeA C-terminal region (domain IV) Xcom_11115 PF03453 MoeA N-terminal region (domain I and II) Xcom_11120 PF00899 ThiF family Xcom_11150 PF08240 Alcohol dehydrogenase GroES-like domain Xcom_11150 PF13823 Alcohol dehydrogenase GroES-associated Xcom_11150 PF00107 Zinc-binding dehydrogenase Xcom_11160 PF03372 Endonuclease/Exonuclease/phosphatase family Xcom_11170 PF03453 MoeA N-terminal region (domain I and II) Xcom_11170 PF00994 Probable molybdopterin binding domain Xcom_11170 PF03454 MoeA C-terminal region (domain IV) Xcom_11175 PF12804 MobA-like NTP transferase domain Xcom_11200 PF10414 Sirohaem synthase dimerisation region Xcom_11200 PF14824 Sirohaem biosynthesis protein central Xcom_11200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Xcom_11205 PF03861 ANTAR domain Xcom_11205 PF00072 Response regulator receiver domain Xcom_11215 PF07690 Major Facilitator Superfamily Xcom_11220 PF07992 Pyridine nucleotide-disulphide oxidoreductase Xcom_11220 PF18267 Rubredoxin NAD+ reductase C-terminal domain Xcom_11220 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Xcom_11220 PF04324 BFD-like [2Fe-2S] binding domain Xcom_11220 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Xcom_11225 PF00355 Rieske [2Fe-2S] domain Xcom_11225 PF11723 Homotrimeric ring hydroxylase Xcom_11230 PF04324 BFD-like [2Fe-2S] binding domain Xcom_11230 PF01568 Molydopterin dinucleotide binding domain Xcom_11230 PF00384 Molybdopterin oxidoreductase Xcom_11230 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Xcom_11235 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Xcom_11250 PF05974 Domain of unknown function (DUF892) Xcom_11265 PF00563 EAL domain Xcom_11265 PF00990 Diguanylate cyclase, GGDEF domain Xcom_11265 PF08447 PAS fold Xcom_11265 PF08448 PAS fold Xcom_11270 PF12951 Passenger-associated-transport-repeat Xcom_11275 PF00072 Response regulator receiver domain Xcom_11275 PF00196 Bacterial regulatory proteins, luxR family Xcom_11280 PF00072 Response regulator receiver domain Xcom_11280 PF13426 PAS domain Xcom_11280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_11280 PF00512 His Kinase A (phospho-acceptor) domain Xcom_11280 PF08448 PAS fold Xcom_11290 PF00873 AcrB/AcrD/AcrF family Xcom_11295 PF00529 HlyD membrane-fusion protein of T1SS Xcom_11295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Xcom_11305 PF03797 Autotransporter beta-domain Xcom_11305 PF00082 Subtilase family Xcom_11315 PF07694 5TMR of 5TMR-LYT Xcom_11315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_11315 PF06580 Histidine kinase Xcom_11320 PF04397 LytTr DNA-binding domain Xcom_11320 PF00072 Response regulator receiver domain Xcom_11325 PF00144 Beta-lactamase Xcom_11335 PF07995 Glucose / Sorbosone dehydrogenase Xcom_11340 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Xcom_11430 PF00034 Cytochrome c Xcom_11440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Xcom_11445 PF00873 AcrB/AcrD/AcrF family Xcom_11450 PF00873 AcrB/AcrD/AcrF family Xcom_11460 PF01081 KDPG and KHG aldolase Xcom_11465 PF00920 Dehydratase family Xcom_11470 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Xcom_11475 PF02685 Glucokinase Xcom_11480 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Xcom_11480 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Xcom_11485 PF00005 ABC transporter Xcom_11485 PF17912 MalK OB fold domain Xcom_11490 PF01571 Aminomethyltransferase folate-binding domain Xcom_11500 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Xcom_11505 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Xcom_11510 PF00890 FAD binding domain Xcom_11510 PF02910 Fumarate reductase flavoprotein C-term Xcom_11520 PF13085 2Fe-2S iron-sulfur cluster binding domain Xcom_11525 PF03937 Flavinator of succinate dehydrogenase Xcom_11535 PF12704 MacB-like periplasmic core domain Xcom_11535 PF02687 FtsX-like permease family Xcom_11540 PF00005 ABC transporter Xcom_11550 PF03772 Competence protein Xcom_11550 PF00753 Metallo-beta-lactamase superfamily Xcom_11555 PF01618 MotA/TolQ/ExbB proton channel family Xcom_11565 PF00005 ABC transporter Xcom_11565 PF00664 ABC transporter transmembrane region Xcom_11570 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Xcom_11575 PF02348 Cytidylyltransferase Xcom_11580 PF01451 Low molecular weight phosphotyrosine protein phosphatase Xcom_11590 PF08459 UvrC Helix-hairpin-helix N-terminal Xcom_11590 PF02151 UvrB/uvrC motif Xcom_11590 PF01541 GIY-YIG catalytic domain Xcom_11595 PF01066 CDP-alcohol phosphatidyltransferase Xcom_11620 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Xcom_11620 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Xcom_11620 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Xcom_11630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Xcom_11645 PF00196 Bacterial regulatory proteins, luxR family Xcom_11645 PF00072 Response regulator receiver domain Xcom_11650 PF12111 Polyribonucleotide phosphorylase C terminal Xcom_11650 PF10150 Ribonuclease E/G family Xcom_11650 PF00575 S1 RNA binding domain Xcom_11655 PF01479 S4 domain Xcom_11655 PF00849 RNA pseudouridylate synthase Xcom_11660 PF11737 Protein of unknown function (DUF3300) Xcom_11665 PF02535 ZIP Zinc transporter Xcom_11675 PF01329 Pterin 4 alpha carbinolamine dehydratase Xcom_11680 PF01106 NifU-like domain Xcom_11695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Xcom_11695 PF00529 HlyD membrane-fusion protein of T1SS Xcom_11700 PF00873 AcrB/AcrD/AcrF family Xcom_11705 PF00440 Bacterial regulatory proteins, tetR family Xcom_11705 PF18665 Tetracyclin repressor-like, C-terminal domain Xcom_11715 PF06441 Epoxide hydrolase N terminus Xcom_11750 PF02585 GlcNAc-PI de-N-acetylase Xcom_11750 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Xcom_11765 PF08241 Methyltransferase domain Xcom_11765 PF12697 Alpha/beta hydrolase family Xcom_11775 PF00106 short chain dehydrogenase Xcom_11780 PF01925 Sulfite exporter TauE/SafE Xcom_11795 PF04143 Sulphur transport Xcom_11810 PF07859 alpha/beta hydrolase fold Xcom_11830 PF03377 TAL effector repeat Xcom_11900 PF00072 Response regulator receiver domain Xcom_11900 PF09308 LuxQ, periplasmic Xcom_11900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_11900 PF00512 His Kinase A (phospho-acceptor) domain Xcom_11905 PF00575 S1 RNA binding domain Xcom_11905 PF16921 Tex protein YqgF-like domain Xcom_11905 PF17674 HHH domain Xcom_11905 PF09371 Tex-like protein N-terminal domain Xcom_11915 PF01266 FAD dependent oxidoreductase Xcom_11915 PF00355 Rieske [2Fe-2S] domain Xcom_11930 PF00561 alpha/beta hydrolase fold Xcom_11940 PF01066 CDP-alcohol phosphatidyltransferase Xcom_11960 PF03618 Kinase/pyrophosphorylase Xcom_11965 PF00391 PEP-utilising enzyme, mobile domain Xcom_11965 PF02896 PEP-utilising enzyme, TIM barrel domain Xcom_11965 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Xcom_11970 PF05552 Conserved TM helix Xcom_11970 PF00924 Mechanosensitive ion channel Xcom_11975 PF00929 Exonuclease Xcom_11980 PF14437 MafB19-like deaminase Xcom_11985 PF01325 Iron dependent repressor, N-terminal DNA binding domain Xcom_11985 PF02742 Iron dependent repressor, metal binding and dimerisation domain Xcom_11990 PF01566 Natural resistance-associated macrophage protein Xcom_11995 PF00561 alpha/beta hydrolase fold Xcom_12010 PF05977 Transmembrane secretion effector Xcom_12015 PF07969 Amidohydrolase family Xcom_12025 PF00857 Isochorismatase family Xcom_12035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_12035 PF07730 Histidine kinase Xcom_12040 PF00072 Response regulator receiver domain Xcom_12040 PF00196 Bacterial regulatory proteins, luxR family Xcom_12060 PF03466 LysR substrate binding domain Xcom_12060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_12065 PF03601 Conserved hypothetical protein 698 Xcom_12075 PF00067 Cytochrome P450 Xcom_12080 PF00111 2Fe-2S iron-sulfur cluster binding domain Xcom_12085 PF07992 Pyridine nucleotide-disulphide oxidoreductase Xcom_12085 PF14759 Reductase C-terminal Xcom_12090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_12090 PF03466 LysR substrate binding domain Xcom_12095 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Xcom_12095 PF00361 Proton-conducting membrane transporter Xcom_12095 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Xcom_12100 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) Xcom_12110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_12110 PF03466 LysR substrate binding domain Xcom_12130 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Xcom_12155 PF13406 Transglycosylase SLT domain Xcom_12170 PF00196 Bacterial regulatory proteins, luxR family Xcom_12170 PF00072 Response regulator receiver domain Xcom_12175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_12175 PF07730 Histidine kinase Xcom_12180 PF00072 Response regulator receiver domain Xcom_12180 PF00196 Bacterial regulatory proteins, luxR family Xcom_12185 PF00067 Cytochrome P450 Xcom_12190 PF05199 GMC oxidoreductase Xcom_12190 PF00732 GMC oxidoreductase Xcom_12200 PF00072 Response regulator receiver domain Xcom_12200 PF00486 Transcriptional regulatory protein, C terminal Xcom_12205 PF00034 Cytochrome c Xcom_12205 PF03150 Di-haem cytochrome c peroxidase Xcom_12210 PF00512 His Kinase A (phospho-acceptor) domain Xcom_12210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_12215 PF03466 LysR substrate binding domain Xcom_12215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_12235 PF00069 Protein kinase domain Xcom_12275 PF04717 Type VI secretion system, phage-baseplate injector Xcom_12290 PF00589 Phage integrase family Xcom_12290 PF13356 Arm DNA-binding domain Xcom_12295 PF00117 Glutamine amidotransferase class-I Xcom_12295 PF02540 NAD synthase Xcom_12295 PF00958 GMP synthase C terminal domain Xcom_12300 PF00478 IMP dehydrogenase / GMP reductase domain Xcom_12300 PF00571 CBS domain Xcom_12305 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Xcom_12305 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Xcom_12315 PF02254 TrkA-N domain Xcom_12315 PF00999 Sodium/hydrogen exchanger family Xcom_12325 PF00483 Nucleotidyl transferase Xcom_12330 PF02719 Polysaccharide biosynthesis protein Xcom_12335 PF00953 Glycosyl transferase family 4 Xcom_12340 PF18073 Rubredoxin metal binding domain Xcom_12350 PF00216 Bacterial DNA-binding protein Xcom_12355 PF00575 S1 RNA binding domain Xcom_12360 PF02224 Cytidylate kinase Xcom_12365 PF00444 Ribosomal protein L36 Xcom_12375 PF04371 Porphyromonas-type peptidyl-arginine deiminase Xcom_12380 PF00795 Carbon-nitrogen hydrolase Xcom_12405 PF00528 Binding-protein-dependent transport system inner membrane component Xcom_12410 PF00528 Binding-protein-dependent transport system inner membrane component Xcom_12430 PF00356 Bacterial regulatory proteins, lacI family Xcom_12440 PF03795 YCII-related domain Xcom_12445 PF02616 Segregation and condensation protein ScpA Xcom_12450 PF04079 Segregation and condensation complex subunit ScpB Xcom_12455 PF00849 RNA pseudouridylate synthase Xcom_12455 PF01479 S4 domain Xcom_12470 PF00795 Carbon-nitrogen hydrolase Xcom_12475 PF00155 Aminotransferase class I and II Xcom_12480 PF00005 ABC transporter Xcom_12485 PF03379 CcmB protein Xcom_12490 PF01578 Cytochrome C assembly protein Xcom_12500 PF03100 CcmE Xcom_12505 PF01578 Cytochrome C assembly protein Xcom_12505 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Xcom_12510 PF08534 Redoxin Xcom_12515 PF03918 Cytochrome C biogenesis protein Xcom_12525 PF00561 alpha/beta hydrolase fold Xcom_12530 PF00313 'Cold-shock' DNA-binding domain Xcom_12535 PF00664 ABC transporter transmembrane region Xcom_12535 PF00005 ABC transporter Xcom_12540 PF00664 ABC transporter transmembrane region Xcom_12540 PF00005 ABC transporter Xcom_12545 PF01654 Cytochrome bd terminal oxidase subunit I Xcom_12550 PF02322 Cytochrome bd terminal oxidase subunit II Xcom_12570 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Xcom_12570 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Xcom_12580 PF00171 Aldehyde dehydrogenase family Xcom_12585 PF01472 PUA domain Xcom_12585 PF00696 Amino acid kinase family Xcom_12595 PF00206 Lyase Xcom_12600 PF01118 Semialdehyde dehydrogenase, NAD binding domain Xcom_12610 PF00696 Amino acid kinase family Xcom_12610 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase Xcom_12625 PF00764 Arginosuccinate synthase Xcom_12630 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Xcom_12630 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Xcom_12640 PF01406 tRNA synthetases class I (C) catalytic domain Xcom_12640 PF09190 DALR domain Xcom_12645 PF02657 Fe-S metabolism associated domain Xcom_12655 PF01258 Prokaryotic dksA/traR C4-type zinc finger Xcom_12660 PF01809 Putative membrane protein insertion efficiency factor Xcom_12665 PF01979 Amidohydrolase family Xcom_12670 PF01551 Peptidase family M23 Xcom_12670 PF08460 Bacterial SH3 domain Xcom_12690 PF06751 Ethanolamine ammonia lyase large subunit (EutB) Xcom_12695 PF05985 Ethanolamine ammonia-lyase light chain (EutC) Xcom_12705 PF00753 Metallo-beta-lactamase superfamily Xcom_12720 PF01095 Pectinesterase Xcom_12730 PF13419 Haloacid dehalogenase-like hydrolase Xcom_12740 PF01979 Amidohydrolase family Xcom_12750 PF09285 Elongation factor P, C-terminal Xcom_12750 PF08207 Elongation factor P (EF-P) KOW-like domain Xcom_12750 PF01132 Elongation factor P (EF-P) OB domain Xcom_12755 PF04055 Radical SAM superfamily Xcom_12760 PF00563 EAL domain Xcom_12760 PF13188 PAS domain Xcom_12760 PF03707 Bacterial signalling protein N terminal repeat Xcom_12760 PF00990 Diguanylate cyclase, GGDEF domain Xcom_12770 PF00588 SpoU rRNA Methylase family Xcom_12775 PF00459 Inositol monophosphatase family Xcom_12780 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Xcom_12780 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Xcom_12785 PF00545 ribonuclease Xcom_12800 PF03880 DbpA RNA binding domain Xcom_12800 PF00271 Helicase conserved C-terminal domain Xcom_12800 PF00270 DEAD/DEAH box helicase Xcom_12805 PF00156 Phosphoribosyl transferase domain Xcom_12810 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Xcom_12815 PF00135 Carboxylesterase family Xcom_12820 PF02798 Glutathione S-transferase, N-terminal domain Xcom_12820 PF14497 Glutathione S-transferase, C-terminal domain Xcom_12825 PF00313 'Cold-shock' DNA-binding domain Xcom_12830 PF07152 YaeQ protein Xcom_12840 PF00563 EAL domain Xcom_12840 PF00990 Diguanylate cyclase, GGDEF domain Xcom_12840 PF00072 Response regulator receiver domain Xcom_12845 PF01435 Peptidase family M48 Xcom_12850 PF00749 tRNA synthetases class I (E and Q), catalytic domain Xcom_12855 PF00106 short chain dehydrogenase Xcom_12860 PF05233 PHB accumulation regulatory domain Xcom_12860 PF07879 PHB/PHA accumulation regulator DNA-binding domain Xcom_12880 PF01119 DNA mismatch repair protein, C-terminal domain Xcom_12880 PF08676 MutL C terminal dimerisation domain Xcom_12885 PF01520 N-acetylmuramoyl-L-alanine amidase Xcom_12885 PF11741 AMIN domain Xcom_12890 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Xcom_12895 PF01256 Carbohydrate kinase Xcom_12895 PF03853 YjeF-related protein N-terminus Xcom_12900 PF08331 Domain of unknown function (DUF1730) Xcom_12905 PF13742 OB-fold nucleic acid binding domain Xcom_12905 PF02601 Exonuclease VII, large subunit Xcom_12920 PF03781 Sulfatase-modifying factor enzyme 1 Xcom_12935 PF00570 HRDC domain Xcom_12935 PF01612 3'-5' exonuclease Xcom_12940 PF04679 ATP dependent DNA ligase C terminal region Xcom_12940 PF01068 ATP dependent DNA ligase domain Xcom_12940 PF13298 DNA polymerase Ligase (LigD) Xcom_12970 PF01584 CheW-like domain Xcom_12975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_12975 PF00672 HAMP domain Xcom_12975 PF02743 Cache domain Xcom_12980 PF02245 Methylpurine-DNA glycosylase (MPG) Xcom_12985 PF00270 DEAD/DEAH box helicase Xcom_12985 PF08494 DEAD/H associated Xcom_12985 PF00271 Helicase conserved C-terminal domain Xcom_13005 PF04386 Stringent starvation protein B Xcom_13010 PF02798 Glutathione S-transferase, N-terminal domain Xcom_13010 PF00043 Glutathione S-transferase, C-terminal domain Xcom_13015 PF02167 Cytochrome C1 family Xcom_13020 PF00033 Cytochrome b/b6/petB Xcom_13020 PF00032 Cytochrome b(C-terminal)/b6/petD Xcom_13025 PF00355 Rieske [2Fe-2S] domain Xcom_13025 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Xcom_13035 PF01464 Transglycosylase SLT domain Xcom_13050 PF01938 TRAM domain Xcom_13050 PF00919 Uncharacterized protein family UPF0004 Xcom_13050 PF04055 Radical SAM superfamily Xcom_13055 PF02562 PhoH-like protein Xcom_13065 PF02130 Uncharacterized protein family UPF0054 Xcom_13075 PF03471 Transporter associated domain Xcom_13075 PF00571 CBS domain Xcom_13090 PF00171 Aldehyde dehydrogenase family Xcom_13095 PF00528 Binding-protein-dependent transport system inner membrane component Xcom_13100 PF00528 Binding-protein-dependent transport system inner membrane component Xcom_13110 PF08402 TOBE domain Xcom_13110 PF00005 ABC transporter Xcom_13115 PF02321 Outer membrane efflux protein Xcom_13120 PF07690 Major Facilitator Superfamily Xcom_13125 PF13533 Biotin-lipoyl like Xcom_13130 PF13416 Bacterial extracellular solute-binding protein Xcom_13135 PF00202 Aminotransferase class-III Xcom_13140 PF00120 Glutamine synthetase, catalytic domain Xcom_13145 PF07722 Peptidase C26 Xcom_13150 PF00120 Glutamine synthetase, catalytic domain Xcom_13155 PF01266 FAD dependent oxidoreductase Xcom_13160 PF00072 Response regulator receiver domain Xcom_13160 PF00990 Diguanylate cyclase, GGDEF domain Xcom_13165 PF01814 Hemerythrin HHE cation binding domain Xcom_13170 PF00083 Sugar (and other) transporter Xcom_13170 PF07690 Major Facilitator Superfamily Xcom_13180 PF00384 Molybdopterin oxidoreductase Xcom_13185 PF02634 FdhD/NarQ family Xcom_13190 PF07690 Major Facilitator Superfamily Xcom_13200 PF00202 Aminotransferase class-III Xcom_13210 PF04286 Protein of unknown function (DUF445) Xcom_13215 PF00072 Response regulator receiver domain Xcom_13215 PF01627 Hpt domain Xcom_13215 PF00512 His Kinase A (phospho-acceptor) domain Xcom_13215 PF00672 HAMP domain Xcom_13215 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Xcom_13215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_13220 PF00072 Response regulator receiver domain Xcom_13225 PF07690 Major Facilitator Superfamily Xcom_13230 PF05088 Bacterial NAD-glutamate dehydrogenase Xcom_13240 PF00529 HlyD membrane-fusion protein of T1SS Xcom_13240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Xcom_13245 PF00873 AcrB/AcrD/AcrF family Xcom_13250 PF00356 Bacterial regulatory proteins, lacI family Xcom_13255 PF05524 PEP-utilising enzyme, N-terminal Xcom_13255 PF00391 PEP-utilising enzyme, mobile domain Xcom_13255 PF02896 PEP-utilising enzyme, TIM barrel domain Xcom_13255 PF00381 PTS HPr component phosphorylation site Xcom_13255 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Xcom_13260 PF00294 pfkB family carbohydrate kinase Xcom_13265 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Xcom_13290 PF03466 LysR substrate binding domain Xcom_13290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_13305 PF01081 KDPG and KHG aldolase Xcom_13310 PF13378 Enolase C-terminal domain-like Xcom_13310 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Xcom_13315 PF08450 SMP-30/Gluconolactonase/LRE-like region Xcom_13320 PF05035 2-keto-3-deoxy-galactonokinase Xcom_13325 PF11953 Domain of unknown function (DUF3470) Xcom_13325 PF00037 4Fe-4S binding domain Xcom_13335 PF00701 Dihydrodipicolinate synthetase family Xcom_13350 PF00578 AhpC/TSA family Xcom_13355 PF13638 PIN domain Xcom_13355 PF02562 PhoH-like protein Xcom_13370 PF08543 Phosphomethylpyrimidine kinase Xcom_13395 PF03466 LysR substrate binding domain Xcom_13395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_13400 PF17954 Quercetinase C-terminal cupin domain Xcom_13400 PF02678 Pirin Xcom_13405 PF13426 PAS domain Xcom_13405 PF08447 PAS fold Xcom_13405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_13420 PF02599 Global regulator protein family Xcom_13425 PF02272 DHHA1 domain Xcom_13425 PF01411 tRNA synthetases class II (A) Xcom_13425 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Xcom_13430 PF02631 RecX family Xcom_13440 PF00154 recA bacterial DNA recombination protein Xcom_13445 PF00717 Peptidase S24-like Xcom_13445 PF01726 LexA DNA binding domain Xcom_13450 PF03109 ABC1 family Xcom_13455 PF02464 Competence-damaged protein Xcom_13460 PF13167 GTP-binding GTPase N-terminal Xcom_13460 PF16360 GTP-binding GTPase Middle Region Xcom_13460 PF01926 50S ribosome-binding GTPase Xcom_13465 PF17209 Hfq protein Xcom_13475 PF00809 Pterin binding enzyme Xcom_13480 PF17862 AAA+ lid domain Xcom_13480 PF06480 FtsH Extracellular Xcom_13480 PF01434 Peptidase family M41 Xcom_13480 PF00004 ATPase family associated with various cellular activities (AAA) Xcom_13485 PF01728 FtsJ-like methyltransferase Xcom_13490 PF01985 CRS1 / YhbY (CRM) domain Xcom_13495 PF04430 Protein of unknown function (DUF498/DUF598) Xcom_13500 PF01551 Peptidase family M23 Xcom_13500 PF01476 LysM domain Xcom_13505 PF09335 SNARE associated Golgi protein Xcom_13515 PF01975 Survival protein SurE Xcom_13520 PF01713 Smr domain Xcom_13525 PF01142 tRNA pseudouridine synthase D (TruD) Xcom_13530 PF02542 YgbB family Xcom_13535 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Xcom_13540 PF04977 Septum formation initiator Xcom_13545 PF03952 Enolase, N-terminal domain Xcom_13545 PF00113 Enolase, C-terminal TIM barrel domain Xcom_13555 PF00793 DAHP synthetase I family Xcom_13560 PF00117 Glutamine amidotransferase class-I Xcom_13560 PF06418 CTP synthase N-terminus Xcom_13570 PF00204 DNA gyrase B Xcom_13570 PF00986 DNA gyrase B subunit, carboxyl terminus Xcom_13570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_13570 PF01751 Toprim domain Xcom_13585 PF01384 Phosphate transporter family Xcom_13600 PF00571 CBS domain Xcom_13600 PF03471 Transporter associated domain Xcom_13600 PF01595 Cyclin M transmembrane N-terminal domain Xcom_13615 PF00296 Luciferase-like monooxygenase Xcom_13620 PF00083 Sugar (and other) transporter Xcom_13625 PF00005 ABC transporter Xcom_13625 PF00664 ABC transporter transmembrane region Xcom_13630 PF00005 ABC transporter Xcom_13650 PF00534 Glycosyl transferases group 1 Xcom_13650 PF13579 Glycosyl transferase 4-like domain Xcom_13670 PF08241 Methyltransferase domain Xcom_13685 PF00535 Glycosyl transferase family 2 Xcom_13690 PF01943 Polysaccharide biosynthesis protein Xcom_13695 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Xcom_13715 PF05523 WxcM-like, C-terminal Xcom_13730 PF00034 Cytochrome c Xcom_13745 PF04542 Sigma-70 region 2 Xcom_13745 PF08281 Sigma-70, region 4 Xcom_13755 PF00082 Subtilase family Xcom_13760 PF01578 Cytochrome C assembly protein Xcom_13765 PF04995 Heme exporter protein D (CcmD) Xcom_13770 PF03100 CcmE Xcom_13775 PF01578 Cytochrome C assembly protein Xcom_13775 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Xcom_13780 PF08534 Redoxin Xcom_13785 PF03918 Cytochrome C biogenesis protein Xcom_13795 PF13426 PAS domain Xcom_13795 PF00072 Response regulator receiver domain Xcom_13795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_13800 PF06745 KaiC Xcom_13810 PF00672 HAMP domain Xcom_13810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_13810 PF00512 His Kinase A (phospho-acceptor) domain Xcom_13810 PF00072 Response regulator receiver domain Xcom_13810 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Xcom_13810 PF01627 Hpt domain Xcom_13815 PF00512 His Kinase A (phospho-acceptor) domain Xcom_13815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_13815 PF00072 Response regulator receiver domain Xcom_13815 PF13188 PAS domain Xcom_13815 PF08448 PAS fold Xcom_13830 PF02203 Tar ligand binding domain homologue Xcom_13830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_13830 PF00672 HAMP domain Xcom_13885 PF03466 LysR substrate binding domain Xcom_13885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_13890 PF02525 Flavodoxin-like fold Xcom_13895 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Xcom_13895 PF02403 Seryl-tRNA synthetase N-terminal domain Xcom_13900 PF03544 Gram-negative bacterial TonB protein C-terminal Xcom_13910 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Xcom_13915 PF00800 Prephenate dehydratase Xcom_13915 PF01842 ACT domain Xcom_13915 PF01817 Chorismate mutase type II Xcom_13920 PF00266 Aminotransferase class-V Xcom_13925 PF00174 Oxidoreductase molybdopterin binding domain Xcom_13930 PF01794 Ferric reductase like transmembrane component Xcom_13955 PF00392 Bacterial regulatory proteins, gntR family Xcom_13955 PF07702 UTRA domain Xcom_13970 PF07969 Amidohydrolase family Xcom_13975 PF00221 Aromatic amino acid lyase Xcom_13985 PF17391 Urocanase N-terminal domain Xcom_13985 PF17392 Urocanase C-terminal domain Xcom_13985 PF01175 Urocanase Rossmann-like domain Xcom_13995 PF13360 PQQ-like domain Xcom_14000 PF03989 DNA gyrase C-terminal domain, beta-propeller Xcom_14000 PF00521 DNA gyrase/topoisomerase IV, subunit A Xcom_14005 PF01008 Initiation factor 2 subunit family Xcom_14020 PF00152 tRNA synthetases class II (D, K and N) Xcom_14025 PF00533 BRCA1 C Terminus (BRCT) domain Xcom_14025 PF03120 NAD-dependent DNA ligase OB-fold domain Xcom_14025 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Xcom_14025 PF12826 Helix-hairpin-helix motif Xcom_14025 PF01653 NAD-dependent DNA ligase adenylation domain Xcom_14030 PF00155 Aminotransferase class I and II Xcom_14040 PF04354 ZipA, C-terminal FtsZ-binding domain Xcom_14045 PF02463 RecF/RecN/SMC N terminal domain Xcom_14050 PF01281 Ribosomal protein L9, N-terminal domain Xcom_14050 PF03948 Ribosomal protein L9, C-terminal domain Xcom_14055 PF01084 Ribosomal protein S18 Xcom_14060 PF01250 Ribosomal protein S6 Xcom_14065 PF01521 Iron-sulphur cluster biosynthesis Xcom_14075 PF01336 OB-fold nucleic acid binding domain Xcom_14075 PF00152 tRNA synthetases class II (D, K and N) Xcom_14100 PF00196 Bacterial regulatory proteins, luxR family Xcom_14100 PF00072 Response regulator receiver domain Xcom_14145 PF00484 Carbonic anhydrase Xcom_14150 PF06052 3-hydroxyanthranilic acid dioxygenase Xcom_14160 PF00266 Aminotransferase class-V Xcom_14165 PF01494 FAD binding domain Xcom_14175 PF08411 Exonuclease C-terminal Xcom_14175 PF00929 Exonuclease Xcom_14195 PF01513 ATP-NAD kinase Xcom_14200 PF10672 S-adenosylmethionine-dependent methyltransferase Xcom_14200 PF02926 THUMP domain Xcom_14200 PF01170 Putative RNA methylase family UPF0020 Xcom_14240 PF00581 Rhodanese-like domain Xcom_14245 PF00293 NUDIX domain Xcom_14250 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Xcom_14250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Xcom_14255 PF00378 Enoyl-CoA hydratase/isomerase Xcom_14265 PF00633 Helix-hairpin-helix motif Xcom_14265 PF00730 HhH-GPD superfamily base excision DNA repair protein Xcom_14265 PF10576 Iron-sulfur binding domain of endonuclease III Xcom_14270 PF01740 STAS domain Xcom_14270 PF00916 Sulfate permease family Xcom_14275 PF00484 Carbonic anhydrase Xcom_14290 PF12849 PBP superfamily domain Xcom_14295 PF12849 PBP superfamily domain Xcom_14300 PF00528 Binding-protein-dependent transport system inner membrane component Xcom_14305 PF00528 Binding-protein-dependent transport system inner membrane component Xcom_14310 PF00005 ABC transporter Xcom_14315 PF01895 PhoU domain Xcom_14325 PF00929 Exonuclease Xcom_14335 PF07694 5TMR of 5TMR-LYT Xcom_14335 PF00990 Diguanylate cyclase, GGDEF domain Xcom_14345 PF00588 SpoU rRNA Methylase family Xcom_14345 PF08032 RNA 2'-O ribose methyltransferase substrate binding Xcom_14360 PF00773 RNB domain Xcom_14360 PF08206 Ribonuclease B OB domain Xcom_14360 PF17876 Cold shock domain Xcom_14360 PF08461 Ribonuclease R winged-helix domain Xcom_14360 PF00575 S1 RNA binding domain Xcom_14385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Xcom_14385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Xcom_14385 PF02770 Acyl-CoA dehydrogenase, middle domain Xcom_14390 PF01209 ubiE/COQ5 methyltransferase family Xcom_14395 PF02574 Homocysteine S-methyltransferase Xcom_14395 PF00809 Pterin binding enzyme Xcom_14400 PF02574 Homocysteine S-methyltransferase Xcom_14400 PF00809 Pterin binding enzyme Xcom_14400 PF02965 Vitamin B12 dependent methionine synthase, activation domain Xcom_14400 PF02310 B12 binding domain Xcom_14400 PF02607 B12 binding domain Xcom_14410 PF00294 pfkB family carbohydrate kinase Xcom_14415 PF07690 Major Facilitator Superfamily Xcom_14420 PF00356 Bacterial regulatory proteins, lacI family Xcom_14435 PF04102 SlyX Xcom_14440 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Xcom_14440 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Xcom_14440 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Xcom_14445 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Xcom_14445 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Xcom_14450 PF00255 Glutathione peroxidase Xcom_14460 PF00392 Bacterial regulatory proteins, gntR family Xcom_14465 PF00005 ABC transporter Xcom_14495 PF00206 Lyase Xcom_14495 PF10415 Fumarase C C-terminus Xcom_14500 PF01595 Cyclin M transmembrane N-terminal domain Xcom_14500 PF00571 CBS domain Xcom_14500 PF03471 Transporter associated domain Xcom_14510 PF00206 Lyase Xcom_14510 PF08328 Adenylosuccinate lyase C-terminal Xcom_14520 PF08007 Cupin superfamily protein Xcom_14530 PF00676 Dehydrogenase E1 component Xcom_14530 PF02779 Transketolase, pyrimidine binding domain Xcom_14530 PF16870 2-oxoglutarate dehydrogenase C-terminal Xcom_14530 PF16078 2-oxoglutarate dehydrogenase N-terminus Xcom_14535 PF00364 Biotin-requiring enzyme Xcom_14535 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Xcom_14535 PF02817 e3 binding domain Xcom_14540 PF07992 Pyridine nucleotide-disulphide oxidoreductase Xcom_14540 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Xcom_14545 PF03641 Possible lysine decarboxylase Xcom_14550 PF01205 Uncharacterized protein family UPF0029 Xcom_14555 PF00664 ABC transporter transmembrane region Xcom_14555 PF00005 ABC transporter Xcom_14565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_14565 PF03466 LysR substrate binding domain Xcom_14570 PF00664 ABC transporter transmembrane region Xcom_14570 PF03412 Peptidase C39 family Xcom_14570 PF00005 ABC transporter Xcom_14595 PF08543 Phosphomethylpyrimidine kinase Xcom_14605 PF01556 DnaJ C terminal domain Xcom_14605 PF00226 DnaJ domain Xcom_14605 PF00684 DnaJ central domain Xcom_14610 PF00012 Hsp70 protein Xcom_14615 PF01025 GrpE Xcom_14620 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Xcom_14620 PF01628 HrcA protein C terminal domain Xcom_14625 PF02463 RecF/RecN/SMC N terminal domain Xcom_14630 PF01475 Ferric uptake regulator family Xcom_14635 PF04355 SmpA / OmlA family Xcom_14640 PF03658 RnfH family Ubiquitin Xcom_14645 PF03364 Polyketide cyclase / dehydrase and lipid transport Xcom_14650 PF01668 SmpB protein Xcom_14680 PF00990 Diguanylate cyclase, GGDEF domain Xcom_14690 PF08448 PAS fold Xcom_14690 PF00990 Diguanylate cyclase, GGDEF domain Xcom_14695 PF02321 Outer membrane efflux protein Xcom_14700 PF00106 short chain dehydrogenase Xcom_14705 PF00873 AcrB/AcrD/AcrF family Xcom_14710 PF00529 HlyD membrane-fusion protein of T1SS Xcom_14710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Xcom_14725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_14725 PF03466 LysR substrate binding domain Xcom_14735 PF00691 OmpA family Xcom_14735 PF05736 OprF membrane domain Xcom_14740 PF00875 DNA photolyase Xcom_14740 PF03441 FAD binding domain of DNA photolyase Xcom_14745 PF00772 DnaB-like helicase N terminal domain Xcom_14745 PF03796 DnaB-like helicase C terminal domain Xcom_14750 PF03358 NADPH-dependent FMN reductase Xcom_14755 PF13537 Glutamine amidotransferase domain Xcom_14755 PF00733 Asparagine synthase Xcom_14765 PF00043 Glutathione S-transferase, C-terminal domain Xcom_14765 PF02798 Glutathione S-transferase, N-terminal domain Xcom_14775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Xcom_14775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Xcom_14775 PF02770 Acyl-CoA dehydrogenase, middle domain Xcom_14790 PF01026 TatD related DNase Xcom_14810 PF00313 'Cold-shock' DNA-binding domain Xcom_14820 PF02253 Phospholipase A1 Xcom_14825 PF00484 Carbonic anhydrase Xcom_14840 PF05681 Fumarate hydratase (Fumerase) Xcom_14840 PF05683 Fumarase C-terminus Xcom_14845 PF00005 ABC transporter Xcom_14850 PF00970 Oxidoreductase FAD-binding domain Xcom_14850 PF00175 Oxidoreductase NAD-binding domain Xcom_14855 PF00255 Glutathione peroxidase Xcom_14860 PF01432 Peptidase family M3 Xcom_14865 PF12802 MarR family Xcom_14890 PF00854 POT family Xcom_14900 PF01915 Glycosyl hydrolase family 3 C-terminal domain Xcom_14900 PF00933 Glycosyl hydrolase family 3 N terminal domain Xcom_14900 PF07691 PA14 domain Xcom_14900 PF14310 Fibronectin type III-like domain Xcom_14925 PF07690 Major Facilitator Superfamily Xcom_14930 PF00529 HlyD membrane-fusion protein of T1SS Xcom_14930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Xcom_14935 PF02321 Outer membrane efflux protein Xcom_14950 PF00521 DNA gyrase/topoisomerase IV, subunit A Xcom_14950 PF03989 DNA gyrase C-terminal domain, beta-propeller Xcom_14955 PF05724 Thiopurine S-methyltransferase (TPMT) Xcom_14960 PF00210 Ferritin-like domain Xcom_14965 PF01804 Penicillin amidase Xcom_14970 PF07715 TonB-dependent Receptor Plug Domain Xcom_14970 PF00593 TonB dependent receptor Xcom_14980 PF13537 Glutamine amidotransferase domain Xcom_14980 PF00733 Asparagine synthase Xcom_14985 PF01546 Peptidase family M20/M25/M40 Xcom_14985 PF07687 Peptidase dimerisation domain Xcom_14990 PF03960 ArsC family Xcom_14995 PF14602 Hexapeptide repeat of succinyl-transferase Xcom_14995 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Xcom_14995 PF00132 Bacterial transferase hexapeptide (six repeats) Xcom_15000 PF01909 Nucleotidyltransferase domain Xcom_15000 PF01966 HD domain Xcom_15000 PF08335 GlnD PII-uridylyltransferase Xcom_15005 PF00557 Metallopeptidase family M24 Xcom_15040 PF00318 Ribosomal protein S2 Xcom_15045 PF00889 Elongation factor TS Xcom_15050 PF00990 Diguanylate cyclase, GGDEF domain Xcom_15050 PF00072 Response regulator receiver domain Xcom_15055 PF00696 Amino acid kinase family Xcom_15060 PF01765 Ribosome recycling factor Xcom_15065 PF01255 Putative undecaprenyl diphosphate synthase Xcom_15075 PF13288 DXP reductoisomerase C-terminal domain Xcom_15075 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Xcom_15075 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Xcom_15080 PF02163 Peptidase family M50 Xcom_15080 PF17820 PDZ domain Xcom_15085 PF01103 Surface antigen Xcom_15085 PF07244 Surface antigen variable number repeat Xcom_15095 PF00132 Bacterial transferase hexapeptide (six repeats) Xcom_15095 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Xcom_15100 PF07977 FabA-like domain Xcom_15105 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Xcom_15105 PF00132 Bacterial transferase hexapeptide (six repeats) Xcom_15110 PF02684 Lipid-A-disaccharide synthetase Xcom_15115 PF01351 Ribonuclease HII Xcom_15120 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Xcom_15120 PF02811 PHP domain Xcom_15120 PF01336 OB-fold nucleic acid binding domain Xcom_15120 PF07733 Bacterial DNA polymerase III alpha NTPase domain Xcom_15120 PF14579 Helix-hairpin-helix motif Xcom_15125 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Xcom_15160 PF03551 Transcriptional regulator PadR-like family Xcom_15180 PF02592 Putative vitamin uptake transporter Xcom_15190 PF02574 Homocysteine S-methyltransferase Xcom_15220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Xcom_15240 PF01588 Putative tRNA binding domain Xcom_15240 PF09334 tRNA synthetases class I (M) Xcom_15250 PF04060 Putative Fe-S cluster Xcom_15265 PF04542 Sigma-70 region 2 Xcom_15265 PF04545 Sigma-70, region 4 Xcom_15310 PF01042 Endoribonuclease L-PSP Xcom_15320 PF09924 Uncharacterised conserved protein (DUF2156) Xcom_15320 PF03706 Lysylphosphatidylglycerol synthase TM region Xcom_15355 PF07690 Major Facilitator Superfamily Xcom_15360 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Xcom_15370 PF08274 PhnA Zinc-Ribbon Xcom_15370 PF03831 PhnA domain Xcom_15380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Xcom_15405 PF01258 Prokaryotic dksA/traR C4-type zinc finger Xcom_15415 PF07043 Protein of unknown function (DUF1328) Xcom_15420 PF01863 Protein of unknown function DUF45 Xcom_15435 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Xcom_15435 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Xcom_15440 PF03797 Autotransporter beta-domain Xcom_15440 PF12951 Passenger-associated-transport-repeat Xcom_15440 PF00082 Subtilase family Xcom_15445 PF00108 Thiolase, N-terminal domain Xcom_15445 PF02803 Thiolase, C-terminal domain Xcom_15465 PF00072 Response regulator receiver domain Xcom_15465 PF00990 Diguanylate cyclase, GGDEF domain Xcom_15485 PF04679 ATP dependent DNA ligase C terminal region Xcom_15485 PF04675 DNA ligase N terminus Xcom_15485 PF01068 ATP dependent DNA ligase domain Xcom_15495 PF01068 ATP dependent DNA ligase domain Xcom_15495 PF04679 ATP dependent DNA ligase C terminal region Xcom_15495 PF04675 DNA ligase N terminus Xcom_15500 PF00271 Helicase conserved C-terminal domain Xcom_15500 PF08494 DEAD/H associated Xcom_15500 PF00270 DEAD/DEAH box helicase Xcom_15510 PF01494 FAD binding domain Xcom_15515 PF00313 'Cold-shock' DNA-binding domain Xcom_15530 PF00933 Glycosyl hydrolase family 3 N terminal domain Xcom_15535 PF04244 Deoxyribodipyrimidine photo-lyase-related protein Xcom_15540 PF01593 Flavin containing amine oxidoreductase Xcom_15545 PF01323 DSBA-like thioredoxin domain Xcom_15555 PF05958 tRNA (Uracil-5-)-methyltransferase Xcom_15570 PF11967 Recombination protein O N terminal Xcom_15570 PF02565 Recombination protein O C terminal Xcom_15580 PF07650 KH domain Xcom_15580 PF01926 50S ribosome-binding GTPase Xcom_15585 PF14622 Ribonuclease-III-like Xcom_15585 PF00035 Double-stranded RNA binding motif Xcom_15595 PF10502 Signal peptidase, peptidase S26 Xcom_15600 PF00679 Elongation factor G C-terminus Xcom_15600 PF00009 Elongation factor Tu GTP binding domain Xcom_15600 PF03144 Elongation factor Tu domain 2 Xcom_15600 PF06421 GTP-binding protein LepA C-terminus Xcom_15605 PF13180 PDZ domain Xcom_15615 PF04542 Sigma-70 region 2 Xcom_15615 PF08281 Sigma-70, region 4 Xcom_15620 PF00378 Enoyl-CoA hydratase/isomerase Xcom_15620 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Xcom_15620 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Xcom_15630 PF01545 Cation efflux family Xcom_15635 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Xcom_15635 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Xcom_15640 PF00378 Enoyl-CoA hydratase/isomerase Xcom_15640 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Xcom_15640 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Xcom_15645 PF00378 Enoyl-CoA hydratase/isomerase Xcom_15650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Xcom_15650 PF02770 Acyl-CoA dehydrogenase, middle domain Xcom_15650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Xcom_15655 PF00171 Aldehyde dehydrogenase family Xcom_15660 PF06114 IrrE N-terminal-like domain Xcom_15660 PF01381 Helix-turn-helix Xcom_15660 PF09856 Predicted transcriptional regulator (DUF2083) Xcom_15670 PF07745 Glycosyl hydrolase family 53 Xcom_15675 PF02837 Glycosyl hydrolases family 2, sugar binding domain Xcom_15675 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 Xcom_15675 PF00703 Glycosyl hydrolases family 2 Xcom_15675 PF16355 Domain of unknown function (DUF4982) Xcom_15675 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Xcom_15690 PF03033 Glycosyltransferase family 28 N-terminal domain Xcom_15695 PF00501 AMP-binding enzyme Xcom_15695 PF13193 AMP-binding enzyme C-terminal domain Xcom_15695 PF00550 Phosphopantetheine attachment site Xcom_15695 PF00668 Condensation domain Xcom_15695 PF00975 Thioesterase domain Xcom_15705 PF17284 Spermidine synthase tetramerisation domain Xcom_15725 PF00754 F5/8 type C domain Xcom_15725 PF07555 beta-N-acetylglucosaminidase Xcom_15725 PF00963 Cohesin domain Xcom_15725 PF02838 Glycosyl hydrolase family 20, domain 2 Xcom_15725 PF00041 Fibronectin type III domain Xcom_15735 PF00543 Nitrogen regulatory protein P-II Xcom_15740 PF04380 Membrane fusogenic activity Xcom_15745 PF13335 Magnesium chelatase, subunit ChlI C-terminal Xcom_15745 PF01078 Magnesium chelatase, subunit ChlI Xcom_15760 PF00563 EAL domain Xcom_15760 PF12792 CSS motif domain associated with EAL Xcom_15765 PF00487 Fatty acid desaturase Xcom_15770 PF00111 2Fe-2S iron-sulfur cluster binding domain Xcom_15770 PF00970 Oxidoreductase FAD-binding domain Xcom_15770 PF00175 Oxidoreductase NAD-binding domain Xcom_15775 PF00440 Bacterial regulatory proteins, tetR family Xcom_15800 PF01139 tRNA-splicing ligase RtcB Xcom_15835 PF08338 Domain of unknown function (DUF1731) Xcom_15835 PF01370 NAD dependent epimerase/dehydratase family Xcom_15840 PF00072 Response regulator receiver domain Xcom_15840 PF00486 Transcriptional regulatory protein, C terminal Xcom_15845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_15845 PF00512 His Kinase A (phospho-acceptor) domain Xcom_15845 PF08521 Two-component sensor kinase N-terminal Xcom_15865 PF00595 PDZ domain Xcom_15885 PF01594 AI-2E family transporter Xcom_15890 PF13419 Haloacid dehalogenase-like hydrolase Xcom_15895 PF02789 Cytosol aminopeptidase family, N-terminal domain Xcom_15895 PF00883 Cytosol aminopeptidase family, catalytic domain Xcom_15905 PF08281 Sigma-70, region 4 Xcom_15905 PF04542 Sigma-70 region 2 Xcom_15910 PF00199 Catalase Xcom_15925 PF00196 Bacterial regulatory proteins, luxR family Xcom_15925 PF00072 Response regulator receiver domain Xcom_15930 PF07730 Histidine kinase Xcom_15935 PF13533 Biotin-lipoyl like Xcom_15940 PF00005 ABC transporter Xcom_15960 PF00892 EamA-like transporter family Xcom_15965 PF00892 EamA-like transporter family Xcom_15985 PF00753 Metallo-beta-lactamase superfamily Xcom_15990 PF00579 tRNA synthetases class I (W and Y) Xcom_15995 PF05532 CsbD-like Xcom_16010 PF00491 Arginase family Xcom_16040 PF02223 Thymidylate kinase Xcom_16055 PF03309 Type III pantothenate kinase Xcom_16060 PF02237 Biotin protein ligase C terminal domain Xcom_16060 PF03099 Biotin/lipoate A/B protein ligase family Xcom_16060 PF08279 HTH domain Xcom_16075 PF06167 Glucose-regulated metallo-peptidase M90 Xcom_16090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_16090 PF00672 HAMP domain Xcom_16090 PF00512 His Kinase A (phospho-acceptor) domain Xcom_16095 PF00072 Response regulator receiver domain Xcom_16095 PF00486 Transcriptional regulatory protein, C terminal Xcom_16105 PF01207 Dihydrouridine synthase (Dus) Xcom_16130 PF00199 Catalase Xcom_16130 PF06628 Catalase-related immune-responsive Xcom_16140 PF13307 Helicase C-terminal domain Xcom_16140 PF06733 DEAD_2 Xcom_16155 PF01488 Shikimate / quinate 5-dehydrogenase Xcom_16155 PF08501 Shikimate dehydrogenase substrate binding domain Xcom_16155 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Xcom_16165 PF00175 Oxidoreductase NAD-binding domain Xcom_16165 PF00258 Flavodoxin Xcom_16165 PF00667 FAD binding domain Xcom_16175 PF00490 Delta-aminolevulinic acid dehydratase Xcom_16200 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region Xcom_16200 PF00326 Prolyl oligopeptidase family Xcom_16205 PF00043 Glutathione S-transferase, C-terminal domain Xcom_16205 PF02798 Glutathione S-transferase, N-terminal domain Xcom_16225 PF04820 Tryptophan halogenase Xcom_16240 PF00005 ABC transporter Xcom_16250 PF01381 Helix-turn-helix Xcom_16260 PF01229 Glycosyl hydrolases family 39 Xcom_16265 PF02583 Metal-sensitive transcriptional repressor Xcom_16270 PF01545 Cation efflux family Xcom_16275 PF00175 Oxidoreductase NAD-binding domain Xcom_16275 PF01383 CpcD/allophycocyanin linker domain Xcom_16280 PF00005 ABC transporter Xcom_16285 PF01061 ABC-2 type transporter Xcom_16290 PF08546 Ketopantoate reductase PanE/ApbA C terminal Xcom_16290 PF02558 Ketopantoate reductase PanE/ApbA Xcom_16305 PF01420 Type I restriction modification DNA specificity domain Xcom_16320 PF00440 Bacterial regulatory proteins, tetR family Xcom_16330 PF11838 ERAP1-like C-terminal domain Xcom_16330 PF01433 Peptidase family M1 domain Xcom_16335 PF00709 Adenylosuccinate synthetase Xcom_16345 PF01145 SPFH domain / Band 7 family Xcom_16350 PF01145 SPFH domain / Band 7 family Xcom_16350 PF12221 Bacterial membrane protein N terminal Xcom_16355 PF00072 Response regulator receiver domain Xcom_16360 PF00226 DnaJ domain Xcom_16360 PF01556 DnaJ C terminal domain Xcom_16370 PF08534 Redoxin Xcom_16380 PF06832 Penicillin-Binding Protein C-terminus Family Xcom_16380 PF00912 Transglycosylase Xcom_16380 PF00905 Penicillin binding protein transpeptidase domain Xcom_16400 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain Xcom_16400 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain Xcom_16400 PF07703 Alpha-2-macroglobulin bait region domain Xcom_16400 PF17962 Bacterial macroglobulin domain 6 Xcom_16400 PF00207 Alpha-2-macroglobulin family Xcom_16400 PF01835 MG2 domain Xcom_16400 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain Xcom_16400 PF11974 Bacterial alpha-2-macroglobulin MG3 domain Xcom_16415 PF07715 TonB-dependent Receptor Plug Domain Xcom_16415 PF00593 TonB dependent receptor Xcom_16420 PF04303 PrpF protein Xcom_16430 PF00694 Aconitase C-terminal domain Xcom_16430 PF00330 Aconitase family (aconitate hydratase) Xcom_16435 PF00285 Citrate synthase, C-terminal domain Xcom_16445 PF06506 Propionate catabolism activator Xcom_16445 PF02954 Bacterial regulatory protein, Fis family Xcom_16445 PF00158 Sigma-54 interaction domain Xcom_16470 PF09115 DNA polymerase III, delta subunit, C terminal Xcom_16475 PF02618 YceG-like family Xcom_16480 PF00425 chorismate binding enzyme Xcom_16480 PF04715 Anthranilate synthase component I, N terminal region Xcom_16485 PF02801 Beta-ketoacyl synthase, C-terminal domain Xcom_16485 PF00109 Beta-ketoacyl synthase, N-terminal domain Xcom_16490 PF00550 Phosphopantetheine attachment site Xcom_16500 PF00698 Acyl transferase domain Xcom_16510 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Xcom_16510 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Xcom_16515 PF01783 Ribosomal L32p protein family Xcom_16520 PF02620 Large ribosomal RNA subunit accumulation protein YceD Xcom_16525 PF02545 Maf-like protein Xcom_16535 PF17863 AAA lid domain Xcom_16535 PF07726 ATPase family associated with various cellular activities (AAA) Xcom_16545 PF11992 Domain of unknown function (DUF3488) Xcom_16545 PF13559 Domain of unknown function (DUF4129) Xcom_16545 PF01841 Transglutaminase-like superfamily Xcom_16555 PF01230 HIT domain Xcom_16560 PF02132 RecR protein Xcom_16560 PF13662 Toprim domain Xcom_16565 PF02575 YbaB/EbfC DNA-binding family Xcom_16570 PF12170 DNA polymerase III tau subunit V interacting with alpha Xcom_16570 PF12169 DNA polymerase III subunits gamma and tau domain III Xcom_16570 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding Xcom_16610 PF02391 MoaE protein Xcom_16615 PF02597 ThiS family Xcom_16620 PF01967 MoaC family Xcom_16630 PF06463 Molybdenum Cofactor Synthesis C Xcom_16630 PF04055 Radical SAM superfamily Xcom_16635 PF12706 Beta-lactamase superfamily domain Xcom_16635 PF00753 Metallo-beta-lactamase superfamily Xcom_16645 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Xcom_16665 PF00929 Exonuclease Xcom_16670 PF00075 RNase H Xcom_16680 PF16123 Hydroxyacylglutathione hydrolase C-terminus Xcom_16680 PF00753 Metallo-beta-lactamase superfamily Xcom_16685 PF05257 CHAP domain Xcom_16685 PF01476 LysM domain Xcom_16705 PF00216 Bacterial DNA-binding protein Xcom_16710 PF02190 ATP-dependent protease La (LON) substrate-binding domain Xcom_16710 PF00004 ATPase family associated with various cellular activities (AAA) Xcom_16710 PF05362 Lon protease (S16) C-terminal proteolytic domain Xcom_16715 PF06689 ClpX C4-type zinc finger Xcom_16715 PF10431 C-terminal, D2-small domain, of ClpB protein Xcom_16715 PF07724 AAA domain (Cdc48 subfamily) Xcom_16720 PF00574 Clp protease Xcom_16725 PF05697 Bacterial trigger factor protein (TF) Xcom_16725 PF05698 Bacterial trigger factor protein (TF) C-terminus Xcom_16765 PF18324 Hypothetical protein TT1725 Xcom_16765 PF00180 Isocitrate/isopropylmalate dehydrogenase Xcom_16775 PF00462 Glutaredoxin Xcom_16780 PF01435 Peptidase family M48 Xcom_16780 PF13181 Tetratricopeptide repeat Xcom_16785 PF00072 Response regulator receiver domain Xcom_16785 PF00486 Transcriptional regulatory protein, C terminal Xcom_16790 PF00989 PAS fold Xcom_16790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_16790 PF00512 His Kinase A (phospho-acceptor) domain Xcom_16790 PF11808 Phosphate regulon sensor protein PhoR Xcom_16795 PF17941 Polyphosphate kinase C-terminal domain 1 Xcom_16795 PF13090 Polyphosphate kinase C-terminal domain 2 Xcom_16795 PF02503 Polyphosphate kinase middle domain Xcom_16795 PF13089 Polyphosphate kinase N-terminal domain Xcom_16800 PF02541 Ppx/GppA phosphatase family Xcom_16805 PF00534 Glycosyl transferases group 1 Xcom_16805 PF13439 Glycosyltransferase Family 4 Xcom_16810 PF01569 PAP2 superfamily Xcom_16815 PF00149 Calcineurin-like phosphoesterase Xcom_16830 PF04305 Protein of unknown function (DUF455) Xcom_16840 PF00156 Phosphoribosyl transferase domain Xcom_16855 PF08245 Mur ligase middle domain Xcom_16855 PF02875 Mur ligase family, glutamate ligase domain Xcom_16860 PF00300 Histidine phosphatase superfamily (branch 1) Xcom_16865 PF10459 Peptidase S46 Xcom_16870 PF05506 Domain of unknown function (DUF756) Xcom_16870 PF04185 Phosphoesterase family Xcom_16885 PF08240 Alcohol dehydrogenase GroES-like domain Xcom_16885 PF00107 Zinc-binding dehydrogenase Xcom_16900 PF00005 ABC transporter Xcom_16900 PF12857 TOBE-like domain Xcom_16900 PF17850 CysA C-terminal regulatory domain Xcom_16905 PF00528 Binding-protein-dependent transport system inner membrane component Xcom_16910 PF00528 Binding-protein-dependent transport system inner membrane component Xcom_16920 PF00155 Aminotransferase class I and II Xcom_16930 PF00849 RNA pseudouridylate synthase Xcom_16940 PF00223 Photosystem I psaA/psaB protein Xcom_16940 PF00691 OmpA family Xcom_16945 PF00107 Zinc-binding dehydrogenase Xcom_16945 PF08240 Alcohol dehydrogenase GroES-like domain Xcom_16950 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Xcom_16950 PF07992 Pyridine nucleotide-disulphide oxidoreductase Xcom_16970 PF00043 Glutathione S-transferase, C-terminal domain Xcom_16970 PF02798 Glutathione S-transferase, N-terminal domain Xcom_16975 PF00056 lactate/malate dehydrogenase, NAD binding domain Xcom_16975 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Xcom_16980 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Xcom_16995 PF01425 Amidase Xcom_17005 PF01474 Class-II DAHP synthetase family Xcom_17025 PF02600 Disulfide bond formation protein DsbB Xcom_17030 PF01196 Ribosomal protein L17 Xcom_17035 PF01000 RNA polymerase Rpb3/RpoA insert domain Xcom_17035 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Xcom_17035 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Xcom_17040 PF00163 Ribosomal protein S4/S9 N-terminal domain Xcom_17040 PF01479 S4 domain Xcom_17045 PF00411 Ribosomal protein S11 Xcom_17050 PF00416 Ribosomal protein S13/S18 Xcom_17055 PF00344 SecY translocase Xcom_17060 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Xcom_17065 PF00327 Ribosomal protein L30p/L7e Xcom_17070 PF00333 Ribosomal protein S5, N-terminal domain Xcom_17070 PF03719 Ribosomal protein S5, C-terminal domain Xcom_17075 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Xcom_17080 PF00347 Ribosomal protein L6 Xcom_17085 PF00410 Ribosomal protein S8 Xcom_17090 PF00253 Ribosomal protein S14p/S29e Xcom_17095 PF00673 ribosomal L5P family C-terminus Xcom_17095 PF00281 Ribosomal protein L5 Xcom_17100 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Xcom_17100 PF00467 KOW motif Xcom_17105 PF00238 Ribosomal protein L14p/L23e Xcom_17110 PF00366 Ribosomal protein S17 Xcom_17115 PF00831 Ribosomal L29 protein Xcom_17120 PF00252 Ribosomal protein L16p/L10e Xcom_17125 PF07650 KH domain Xcom_17125 PF00189 Ribosomal protein S3, C-terminal domain Xcom_17130 PF00237 Ribosomal protein L22p/L17e Xcom_17135 PF00203 Ribosomal protein S19 Xcom_17140 PF03947 Ribosomal Proteins L2, C-terminal domain Xcom_17140 PF00181 Ribosomal Proteins L2, RNA binding domain Xcom_17145 PF00276 Ribosomal protein L23 Xcom_17150 PF00573 Ribosomal protein L4/L1 family Xcom_17155 PF00297 Ribosomal protein L3 Xcom_17160 PF00338 Ribosomal protein S10p/S20e Xcom_17175 PF00009 Elongation factor Tu GTP binding domain Xcom_17175 PF03143 Elongation factor Tu C-terminal domain Xcom_17175 PF03144 Elongation factor Tu domain 2 Xcom_17180 PF03764 Elongation factor G, domain IV Xcom_17180 PF14492 Elongation Factor G, domain II Xcom_17180 PF00679 Elongation factor G C-terminus Xcom_17180 PF03144 Elongation factor Tu domain 2 Xcom_17180 PF00009 Elongation factor Tu GTP binding domain Xcom_17185 PF00177 Ribosomal protein S7p/S5e Xcom_17190 PF00164 Ribosomal protein S12/S23 Xcom_17195 PF04997 RNA polymerase Rpb1, domain 1 Xcom_17195 PF04998 RNA polymerase Rpb1, domain 5 Xcom_17195 PF00623 RNA polymerase Rpb1, domain 2 Xcom_17195 PF04983 RNA polymerase Rpb1, domain 3 Xcom_17195 PF05000 RNA polymerase Rpb1, domain 4 Xcom_17200 PF04565 RNA polymerase Rpb2, domain 3 Xcom_17200 PF04560 RNA polymerase Rpb2, domain 7 Xcom_17200 PF10385 RNA polymerase beta subunit external 1 domain Xcom_17200 PF04563 RNA polymerase beta subunit Xcom_17200 PF00562 RNA polymerase Rpb2, domain 6 Xcom_17200 PF04561 RNA polymerase Rpb2, domain 2 Xcom_17205 PF00542 Ribosomal protein L7/L12 C-terminal domain Xcom_17205 PF16320 Ribosomal protein L7/L12 dimerisation domain Xcom_17210 PF00466 Ribosomal protein L10 Xcom_17215 PF00687 Ribosomal protein L1p/L10e family Xcom_17220 PF00298 Ribosomal protein L11, RNA binding domain Xcom_17220 PF03946 Ribosomal protein L11, N-terminal domain Xcom_17225 PF02357 Transcription termination factor nusG Xcom_17225 PF00467 KOW motif Xcom_17230 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Xcom_17240 PF03144 Elongation factor Tu domain 2 Xcom_17240 PF03143 Elongation factor Tu C-terminal domain Xcom_17240 PF00009 Elongation factor Tu GTP binding domain Xcom_17260 PF01926 50S ribosome-binding GTPase Xcom_17260 PF06071 Protein of unknown function (DUF933) Xcom_17265 PF01195 Peptidyl-tRNA hydrolase Xcom_17270 PF01386 Ribosomal L25p family Xcom_17270 PF14693 Ribosomal protein TL5, C-terminal domain Xcom_17275 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Xcom_17275 PF14572 Phosphoribosyl synthetase-associated domain Xcom_17285 PF00288 GHMP kinases N terminal domain Xcom_17285 PF08544 GHMP kinases C terminal Xcom_17290 PF03550 Outer membrane lipoprotein LolB Xcom_17300 PF01488 Shikimate / quinate 5-dehydrogenase Xcom_17300 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Xcom_17300 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Xcom_17305 PF00472 RF-1 domain Xcom_17305 PF03462 PCRF domain Xcom_17315 PF00994 Probable molybdopterin binding domain Xcom_17320 PF03976 Polyphosphate kinase 2 (PPK2) Xcom_17330 PF00708 Acylphosphatase Xcom_17335 PF08534 Redoxin Xcom_17340 PF03631 Virulence factor BrkB Xcom_17345 PF03358 NADPH-dependent FMN reductase Xcom_17355 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain Xcom_17355 PF17189 Glycosyl hydrolase family 30 beta sandwich domain Xcom_17365 PF04073 Aminoacyl-tRNA editing domain Xcom_17370 PF04151 Bacterial pre-peptidase C-terminal domain Xcom_17370 PF00082 Subtilase family Xcom_17375 PF04151 Bacterial pre-peptidase C-terminal domain Xcom_17375 PF00082 Subtilase family Xcom_17380 PF00082 Subtilase family Xcom_17380 PF04151 Bacterial pre-peptidase C-terminal domain Xcom_17385 PF01063 Amino-transferase class IV Xcom_17400 PF02233 NAD(P) transhydrogenase beta subunit Xcom_17405 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Xcom_17425 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Xcom_17425 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Xcom_17425 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Xcom_17445 PF01612 3'-5' exonuclease Xcom_17445 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Xcom_17445 PF01367 5'-3' exonuclease, C-terminal SAM fold Xcom_17445 PF00476 DNA polymerase family A Xcom_17450 PF00293 NUDIX domain Xcom_17460 PF00561 alpha/beta hydrolase fold Xcom_17465 PF17827 PrmC N-terminal domain Xcom_17465 PF05175 Methyltransferase small domain Xcom_17470 PF00578 AhpC/TSA family Xcom_17470 PF10417 C-terminal domain of 1-Cys peroxiredoxin Xcom_17475 PF07992 Pyridine nucleotide-disulphide oxidoreductase Xcom_17475 PF13192 Thioredoxin domain Xcom_17480 PF03466 LysR substrate binding domain Xcom_17480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_17490 PF01272 Transcription elongation factor, GreA/GreB, C-term Xcom_17490 PF14760 Rnk N-terminus Xcom_17495 PF00923 Transaldolase/Fructose-6-phosphate aldolase Xcom_17510 PF01625 Peptide methionine sulfoxide reductase Xcom_17520 PF00072 Response regulator receiver domain Xcom_17520 PF00196 Bacterial regulatory proteins, luxR family Xcom_17525 PF00672 HAMP domain Xcom_17525 PF00512 His Kinase A (phospho-acceptor) domain Xcom_17525 PF01627 Hpt domain Xcom_17525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_17525 PF17149 Periplasmic sensor domain found in signal transduction proteins Xcom_17525 PF00072 Response regulator receiver domain Xcom_17530 PF00072 Response regulator receiver domain Xcom_17545 PF00749 tRNA synthetases class I (E and Q), catalytic domain Xcom_17545 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Xcom_17555 PF00892 EamA-like transporter family Xcom_17575 PF18125 RlmM ferredoxin-like domain Xcom_17575 PF01728 FtsJ-like methyltransferase Xcom_17580 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Xcom_17580 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Xcom_17585 PF08450 SMP-30/Gluconolactonase/LRE-like region Xcom_17605 PF00378 Enoyl-CoA hydratase/isomerase Xcom_17610 PF00171 Aldehyde dehydrogenase family Xcom_17615 PF13193 AMP-binding enzyme C-terminal domain Xcom_17615 PF00501 AMP-binding enzyme Xcom_17620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_17620 PF03466 LysR substrate binding domain Xcom_17625 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Xcom_17625 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit Xcom_17630 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Xcom_17635 PF07729 FCD domain Xcom_17635 PF00392 Bacterial regulatory proteins, gntR family Xcom_17655 PF01494 FAD binding domain Xcom_17660 PF01494 FAD binding domain Xcom_17675 PF01923 Cobalamin adenosyltransferase Xcom_17680 PF00850 Histone deacetylase domain Xcom_17685 PF04453 LPS transport system D Xcom_17685 PF03968 OstA-like protein Xcom_17690 PF00639 PPIC-type PPIASE domain Xcom_17690 PF09312 SurA N-terminal domain Xcom_17695 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Xcom_17700 PF00398 Ribosomal RNA adenine dimethylase Xcom_17705 PF04379 ApaG domain Xcom_17710 PF00149 Calcineurin-like phosphoesterase Xcom_17715 PF00186 Dihydrofolate reductase Xcom_17725 PF00303 Thymidylate synthase Xcom_17730 PF01790 Prolipoprotein diacylglyceryl transferase Xcom_17750 PF01219 Prokaryotic diacylglycerol kinase Xcom_17765 PF00486 Transcriptional regulatory protein, C terminal Xcom_17765 PF00072 Response regulator receiver domain Xcom_17770 PF13472 GDSL-like Lipase/Acylhydrolase family Xcom_17775 PF00005 ABC transporter Xcom_17785 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Xcom_17795 PF00005 ABC transporter Xcom_17800 PF00528 Binding-protein-dependent transport system inner membrane component Xcom_17820 PF07715 TonB-dependent Receptor Plug Domain Xcom_17820 PF00593 TonB dependent receptor Xcom_17830 PF00248 Aldo/keto reductase family Xcom_17835 PF01773 Na+ dependent nucleoside transporter N-terminus Xcom_17835 PF07670 Nucleoside recognition Xcom_17835 PF07662 Na+ dependent nucleoside transporter C-terminus Xcom_17840 PF00294 pfkB family carbohydrate kinase Xcom_17850 PF01207 Dihydrouridine synthase (Dus) Xcom_17855 PF13649 Methyltransferase domain Xcom_17865 PF00438 S-adenosylmethionine synthetase, N-terminal domain Xcom_17865 PF02772 S-adenosylmethionine synthetase, central domain Xcom_17865 PF02773 S-adenosylmethionine synthetase, C-terminal domain Xcom_17870 PF00328 Histidine phosphatase superfamily (branch 2) Xcom_17905 PF00311 Phosphoenolpyruvate carboxylase Xcom_17915 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Xcom_17915 PF05221 S-adenosyl-L-homocysteine hydrolase Xcom_17920 PF13649 Methyltransferase domain Xcom_17950 PF00128 Alpha amylase, catalytic domain Xcom_17955 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Xcom_17970 PF09286 Pro-kumamolisin, activation domain Xcom_17970 PF00082 Subtilase family Xcom_17975 PF00550 Phosphopantetheine attachment site Xcom_17975 PF16197 Ketoacyl-synthetase C-terminal extension Xcom_17975 PF00109 Beta-ketoacyl synthase, N-terminal domain Xcom_17975 PF00107 Zinc-binding dehydrogenase Xcom_17975 PF08240 Alcohol dehydrogenase GroES-like domain Xcom_17975 PF02801 Beta-ketoacyl synthase, C-terminal domain Xcom_17975 PF00698 Acyl transferase domain Xcom_17975 PF14765 Polyketide synthase dehydratase Xcom_17975 PF08659 KR domain Xcom_17985 PF02219 Methylenetetrahydrofolate reductase Xcom_17995 PF00293 NUDIX domain Xcom_18005 PF07516 SecA Wing and Scaffold domain Xcom_18005 PF02810 SEC-C motif Xcom_18005 PF07517 SecA DEAD-like domain Xcom_18005 PF01043 SecA preprotein cross-linking domain Xcom_18010 PF01476 LysM domain Xcom_18010 PF01551 Peptidase family M23 Xcom_18010 PF08525 Opacity-associated protein A N-terminal motif Xcom_18020 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Xcom_18025 PF00091 Tubulin/FtsZ family, GTPase domain Xcom_18025 PF12327 FtsZ family, C-terminal domain Xcom_18030 PF02491 SHS2 domain inserted in FTSA Xcom_18035 PF03799 Cell division protein FtsQ Xcom_18035 PF08478 POTRA domain, FtsQ-type Xcom_18040 PF07478 D-ala D-ala ligase C-terminus Xcom_18040 PF01820 D-ala D-ala ligase N-terminus Xcom_18045 PF02875 Mur ligase family, glutamate ligase domain Xcom_18045 PF08245 Mur ligase middle domain Xcom_18045 PF01225 Mur ligase family, catalytic domain Xcom_18050 PF04101 Glycosyltransferase family 28 C-terminal domain Xcom_18050 PF03033 Glycosyltransferase family 28 N-terminal domain Xcom_18055 PF01098 Cell cycle protein Xcom_18060 PF00953 Glycosyl transferase family 4 Xcom_18065 PF01225 Mur ligase family, catalytic domain Xcom_18065 PF02875 Mur ligase family, glutamate ligase domain Xcom_18065 PF08245 Mur ligase middle domain Xcom_18070 PF01225 Mur ligase family, catalytic domain Xcom_18070 PF02875 Mur ligase family, glutamate ligase domain Xcom_18070 PF08245 Mur ligase middle domain Xcom_18075 PF03717 Penicillin-binding Protein dimerisation domain Xcom_18075 PF00905 Penicillin binding protein transpeptidase domain Xcom_18085 PF04999 Cell division protein FtsL Xcom_18090 PF01795 MraW methylase family Xcom_18095 PF02381 MraZ protein, putative antitoxin-like Xcom_18120 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Xcom_18130 PF02021 Uncharacterised protein family UPF0102 Xcom_18135 PF04307 LexA-binding, inner membrane-associated putative hydrolase Xcom_18140 PF01565 FAD binding domain Xcom_18140 PF02913 FAD linked oxidases, C-terminal domain Xcom_18150 PF00072 Response regulator receiver domain Xcom_18150 PF00486 Transcriptional regulatory protein, C terminal Xcom_18155 PF02702 Osmosensitive K+ channel His kinase sensor domain Xcom_18155 PF00512 His Kinase A (phospho-acceptor) domain Xcom_18155 PF13493 Domain of unknown function (DUF4118) Xcom_18155 PF13492 GAF domain Xcom_18155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_18160 PF02669 K+-transporting ATPase, c chain Xcom_18170 PF03814 Potassium-transporting ATPase A subunit Xcom_18195 PF02769 AIR synthase related protein, C-terminal domain Xcom_18195 PF00586 AIR synthase related protein, N-terminal domain Xcom_18200 PF01029 NusB family Xcom_18205 PF00885 6,7-dimethyl-8-ribityllumazine synthase Xcom_18210 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Xcom_18210 PF00925 GTP cyclohydrolase II Xcom_18215 PF00677 Lumazine binding domain Xcom_18225 PF01872 RibD C-terminal domain Xcom_18225 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Xcom_18235 PF03477 ATP cone domain Xcom_18240 PF00464 Serine hydroxymethyltransferase Xcom_18250 PF12848 ABC transporter Xcom_18250 PF00005 ABC transporter Xcom_18260 PF00756 Putative esterase Xcom_18265 PF04828 Glutathione-dependent formaldehyde-activating enzyme Xcom_18270 PF00107 Zinc-binding dehydrogenase Xcom_18270 PF08240 Alcohol dehydrogenase GroES-like domain Xcom_18275 PF02583 Metal-sensitive transcriptional repressor Xcom_18290 PF00486 Transcriptional regulatory protein, C terminal Xcom_18290 PF00072 Response regulator receiver domain Xcom_18295 PF00672 HAMP domain Xcom_18295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_18295 PF00512 His Kinase A (phospho-acceptor) domain Xcom_18300 PF04107 Glutamate-cysteine ligase family 2(GCS2) Xcom_18305 PF01926 50S ribosome-binding GTPase Xcom_18310 PF00034 Cytochrome c Xcom_18320 PF01323 DSBA-like thioredoxin domain Xcom_18335 PF02028 BCCT, betaine/carnitine/choline family transporter Xcom_18340 PF00171 Aldehyde dehydrogenase family Xcom_18345 PF05199 GMC oxidoreductase Xcom_18345 PF00732 GMC oxidoreductase Xcom_18350 PF12627 Probable RNA and SrmB- binding site of polymerase A Xcom_18350 PF01966 HD domain Xcom_18350 PF01743 Poly A polymerase head domain Xcom_18365 PF01979 Amidohydrolase family Xcom_18370 PF01380 SIS domain Xcom_18375 PF00356 Bacterial regulatory proteins, lacI family Xcom_18380 PF07690 Major Facilitator Superfamily Xcom_18405 PF03934 Type II secretion system (T2SS), protein K Xcom_18410 PF07963 Prokaryotic N-terminal methylation motif Xcom_18410 PF11612 Type II secretion system (T2SS), protein J Xcom_18415 PF02501 Type II secretion system (T2SS), protein I Xcom_18415 PF07963 Prokaryotic N-terminal methylation motif Xcom_18420 PF12019 Type II transport protein GspH Xcom_18420 PF07963 Prokaryotic N-terminal methylation motif Xcom_18425 PF08334 Type II secretion system (T2SS), protein G Xcom_18425 PF07963 Prokaryotic N-terminal methylation motif Xcom_18430 PF00482 Type II secretion system (T2SS), protein F Xcom_18435 PF00437 Type II/IV secretion system protein Xcom_18440 PF03958 Bacterial type II/III secretion system short domain Xcom_18440 PF00263 Bacterial type II and III secretion system protein Xcom_18480 PF00106 short chain dehydrogenase Xcom_18485 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Xcom_18490 PF00512 His Kinase A (phospho-acceptor) domain Xcom_18490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_18495 PF00072 Response regulator receiver domain Xcom_18500 PF08446 PAS fold Xcom_18500 PF00512 His Kinase A (phospho-acceptor) domain Xcom_18500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_18500 PF00360 Phytochrome region Xcom_18500 PF01590 GAF domain Xcom_18505 PF04972 BON domain Xcom_18510 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Xcom_18510 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Xcom_18515 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Xcom_18515 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Xcom_18550 PF00293 NUDIX domain Xcom_18550 PF01467 Cytidylyltransferase-like Xcom_18560 PF03466 LysR substrate binding domain Xcom_18560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_18570 PF03572 Peptidase family S41 Xcom_18570 PF11818 C-terminal domain of tail specific protease (DUF3340) Xcom_18570 PF00595 PDZ domain Xcom_18570 PF17804 Tail specific protease N-terminal domain Xcom_18575 PF04055 Radical SAM superfamily Xcom_18575 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Xcom_18580 PF03099 Biotin/lipoate A/B protein ligase family Xcom_18585 PF04359 Protein of unknown function (DUF493) Xcom_18600 PF07943 Penicillin-binding protein 5, C-terminal domain Xcom_18600 PF00768 D-alanyl-D-alanine carboxypeptidase Xcom_18610 PF03330 Lytic transglycolase Xcom_18610 PF05036 Sporulation related domain Xcom_18615 PF13406 Transglycosylase SLT domain Xcom_18620 PF00295 Glycosyl hydrolases family 28 Xcom_18630 PF01098 Cell cycle protein Xcom_18635 PF00905 Penicillin binding protein transpeptidase domain Xcom_18635 PF03717 Penicillin-binding Protein dimerisation domain Xcom_18645 PF04085 rod shape-determining protein MreC Xcom_18655 PF00294 pfkB family carbohydrate kinase Xcom_18660 PF00158 Sigma-54 interaction domain Xcom_18660 PF02954 Bacterial regulatory protein, Fis family Xcom_18660 PF01590 GAF domain Xcom_18670 PF00107 Zinc-binding dehydrogenase Xcom_18670 PF08240 Alcohol dehydrogenase GroES-like domain Xcom_18690 PF13360 PQQ-like domain Xcom_18710 PF01433 Peptidase family M1 domain Xcom_18710 PF11838 ERAP1-like C-terminal domain Xcom_18715 PF03707 Bacterial signalling protein N terminal repeat Xcom_18715 PF00990 Diguanylate cyclase, GGDEF domain Xcom_18715 PF00563 EAL domain Xcom_18720 PF01209 ubiE/COQ5 methyltransferase family Xcom_18730 PF13533 Biotin-lipoyl like Xcom_18735 PF13673 Acetyltransferase (GNAT) domain Xcom_18745 PF00004 ATPase family associated with various cellular activities (AAA) Xcom_18745 PF10431 C-terminal, D2-small domain, of ClpB protein Xcom_18745 PF07724 AAA domain (Cdc48 subfamily) Xcom_18750 PF00227 Proteasome subunit Xcom_18755 PF00589 Phage integrase family Xcom_18755 PF02899 Phage integrase, N-terminal SAM-like domain Xcom_18765 PF01678 Diaminopimelate epimerase Xcom_18775 PF04304 Protein of unknown function (DUF454) Xcom_18780 PF00326 Prolyl oligopeptidase family Xcom_18780 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Xcom_18790 PF00155 Aminotransferase class I and II Xcom_18795 PF00326 Prolyl oligopeptidase family Xcom_18795 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Xcom_18835 PF03900 Porphobilinogen deaminase, C-terminal domain Xcom_18835 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Xcom_18840 PF00072 Response regulator receiver domain Xcom_18840 PF04397 LytTr DNA-binding domain Xcom_18845 PF06580 Histidine kinase Xcom_18845 PF07694 5TMR of 5TMR-LYT Xcom_18855 PF13632 Glycosyl transferase family group 2 Xcom_18875 PF08448 PAS fold Xcom_18875 PF00990 Diguanylate cyclase, GGDEF domain Xcom_18880 PF00916 Sulfate permease family Xcom_18880 PF01740 STAS domain Xcom_18885 PF00553 Cellulose binding domain Xcom_18885 PF00150 Cellulase (glycosyl hydrolase family 5) Xcom_18890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xcom_18890 PF00672 HAMP domain Xcom_18890 PF02203 Tar ligand binding domain homologue Xcom_18895 PF00563 EAL domain Xcom_18895 PF00990 Diguanylate cyclase, GGDEF domain Xcom_18895 PF03707 Bacterial signalling protein N terminal repeat Xcom_18915 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Xcom_18915 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Xcom_18925 PF01204 Trehalase Xcom_18935 PF13276 HTH-like domain Xcom_18935 PF13683 Integrase core domain Xcom_18945 PF01544 CorA-like Mg2+ transporter protein Xcom_18955 PF00324 Amino acid permease Xcom_18970 PF00497 Bacterial extracellular solute-binding proteins, family 3 Xcom_18975 PF00892 EamA-like transporter family Xcom_19000 PF02082 Transcriptional regulator Xcom_19005 PF05230 MASE2 domain Xcom_19005 PF00990 Diguanylate cyclase, GGDEF domain Xcom_19010 PF07759 Protein of unknown function (DUF1615) Xcom_19030 PF03176 MMPL family Xcom_19030 PF12823 Domain of unknown function (DUF3817) Xcom_19055 PF13409 Glutathione S-transferase, N-terminal domain Xcom_19065 PF00106 short chain dehydrogenase Xcom_19105 PF00106 short chain dehydrogenase Xcom_19130 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Xcom_19135 PF00456 Transketolase, thiamine diphosphate binding domain Xcom_19135 PF17831 Pyruvate dehydrogenase E1 component middle domain Xcom_19140 PF07745 Glycosyl hydrolase family 53 Xcom_19170 PF13419 Haloacid dehalogenase-like hydrolase Xcom_19175 PF00392 Bacterial regulatory proteins, gntR family Xcom_19175 PF07729 FCD domain Xcom_19185 PF00698 Acyl transferase domain Xcom_19190 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase Xcom_19195 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG Xcom_19205 PF01039 Carboxyl transferase domain Xcom_19210 PF06857 Malonate decarboxylase delta subunit (MdcD) Xcom_19215 PF16957 Malonate decarboxylase, alpha subunit, transporter Xcom_19240 PF04264 YceI-like domain Xcom_19245 PF00881 Nitroreductase family Xcom_19270 PF02592 Putative vitamin uptake transporter Xcom_19275 PF08335 GlnD PII-uridylyltransferase Xcom_19275 PF03710 Glutamate-ammonia ligase adenylyltransferase Xcom_19285 PF08450 SMP-30/Gluconolactonase/LRE-like region Xcom_19300 PF00793 DAHP synthetase I family Xcom_19305 PF07715 TonB-dependent Receptor Plug Domain Xcom_19305 PF00593 TonB dependent receptor Xcom_19315 PF00118 TCP-1/cpn60 chaperonin family Xcom_19320 PF00166 Chaperonin 10 Kd subunit Xcom_19330 PF04231 Endonuclease I Xcom_19340 PF03091 CutA1 divalent ion tolerance protein Xcom_19345 PF02683 Cytochrome C biogenesis protein transmembrane region Xcom_19345 PF11412 Disulphide bond corrector protein DsbC Xcom_19350 PF01220 Dehydroquinase class II Xcom_19355 PF00364 Biotin-requiring enzyme Xcom_19365 PF00289 Biotin carboxylase, N-terminal domain Xcom_19365 PF02785 Biotin carboxylase C-terminal domain Xcom_19365 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Xcom_19400 PF01381 Helix-turn-helix Xcom_19420 PF02954 Bacterial regulatory protein, Fis family Xcom_19450 PF00782 Dual specificity phosphatase, catalytic domain Xcom_19455 PF12146 Serine aminopeptidase, S33 Xcom_19455 PF12147 Putative methyltransferase Xcom_19460 PF01066 CDP-alcohol phosphatidyltransferase Xcom_19465 PF01808 AICARFT/IMPCHase bienzyme Xcom_19465 PF02142 MGS-like domain Xcom_19475 PF02844 Phosphoribosylglycinamide synthetase, N domain Xcom_19475 PF02843 Phosphoribosylglycinamide synthetase, C domain Xcom_19475 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Xcom_19480 PF12805 FUSC-like inner membrane protein yccS Xcom_19485 PF07690 Major Facilitator Superfamily Xcom_19495 PF07690 Major Facilitator Superfamily Xcom_19515 PF03186 CobD/Cbib protein Xcom_19515 PF17113 Regulatory signalling modulator protein AmpE Xcom_19520 PF00293 NUDIX domain Xcom_19520 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain Xcom_19520 PF09297 NADH pyrophosphatase zinc ribbon domain Xcom_19535 PF01521 Iron-sulphur cluster biosynthesis Xcom_19555 PF00072 Response regulator receiver domain Xcom_19555 PF00486 Transcriptional regulatory protein, C terminal Xcom_19560 PF01627 Hpt domain Xcom_19560 PF00672 HAMP domain Xcom_19560 PF00072 Response regulator receiver domain Xcom_19560 PF00512 His Kinase A (phospho-acceptor) domain Xcom_19560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_19560 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Xcom_19565 PF00210 Ferritin-like domain Xcom_19580 PF00293 NUDIX domain Xcom_19595 PF00380 Ribosomal protein S9/S16 Xcom_19600 PF00572 Ribosomal protein L13 Xcom_19605 PF03232 Ubiquinone biosynthesis protein COQ7 Xcom_19610 PF00893 Small Multidrug Resistance protein Xcom_19615 PF02675 S-adenosylmethionine decarboxylase Xcom_19620 PF00027 Cyclic nucleotide-binding domain Xcom_19620 PF00325 Bacterial regulatory proteins, crp family Xcom_19630 PF00218 Indole-3-glycerol phosphate synthase Xcom_19635 PF00591 Glycosyl transferase family, a/b domain Xcom_19635 PF02885 Glycosyl transferase family, helical bundle domain Xcom_19645 PF00117 Glutamine amidotransferase class-I Xcom_19660 PF00425 chorismate binding enzyme Xcom_19660 PF04715 Anthranilate synthase component I, N terminal region Xcom_19665 PF00781 Diacylglycerol kinase catalytic domain Xcom_19670 PF00583 Acetyltransferase (GNAT) family Xcom_19675 PF00834 Ribulose-phosphate 3 epimerase family Xcom_19680 PF05099 Tellurite resistance protein TerB Xcom_19680 PF00226 DnaJ domain Xcom_19685 PF01259 SAICAR synthetase Xcom_19705 PF00182 Chitinase class I Xcom_19715 PF07504 Fungalysin/Thermolysin Propeptide Motif Xcom_19715 PF01483 Proprotein convertase P-domain Xcom_19715 PF01447 Thermolysin metallopeptidase, catalytic domain Xcom_19715 PF02868 Thermolysin metallopeptidase, alpha-helical domain Xcom_19730 PF00361 Proton-conducting membrane transporter Xcom_19730 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Xcom_19730 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Xcom_19730 PF13244 Domain of unknown function (DUF4040) Xcom_19735 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Xcom_19740 PF00361 Proton-conducting membrane transporter Xcom_19750 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) Xcom_19755 PF03334 Na+/H+ antiporter subunit Xcom_19770 PF04209 homogentisate 1,2-dioxygenase Xcom_19775 PF04480 Protein of unknown function (DUF559) Xcom_19780 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Xcom_19785 PF01047 MarR family Xcom_19795 PF00854 POT family Xcom_19800 PF03301 Tryptophan 2,3-dioxygenase Xcom_19810 PF00676 Dehydrogenase E1 component Xcom_19815 PF02779 Transketolase, pyrimidine binding domain Xcom_19815 PF02780 Transketolase, C-terminal domain Xcom_19825 PF00364 Biotin-requiring enzyme Xcom_19825 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Xcom_19825 PF02817 e3 binding domain Xcom_19845 PF00271 Helicase conserved C-terminal domain Xcom_19845 PF00270 DEAD/DEAH box helicase Xcom_19865 PF00873 AcrB/AcrD/AcrF family Xcom_19880 PF02321 Outer membrane efflux protein Xcom_19885 PF06903 VirK protein Xcom_19905 PF13460 NAD(P)H-binding Xcom_19910 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Xcom_19910 PF00128 Alpha amylase, catalytic domain Xcom_19920 PF00128 Alpha amylase, catalytic domain Xcom_19930 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Xcom_19930 PF00128 Alpha amylase, catalytic domain Xcom_19930 PF11941 Domain of unknown function (DUF3459) Xcom_19935 PF00128 Alpha amylase, catalytic domain Xcom_19935 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Xcom_19935 PF02806 Alpha amylase, C-terminal all-beta domain Xcom_19940 PF00534 Glycosyl transferases group 1 Xcom_19940 PF08323 Starch synthase catalytic domain Xcom_19945 PF00072 Response regulator receiver domain Xcom_19945 PF00990 Diguanylate cyclase, GGDEF domain Xcom_19950 PF05661 Protein of unknown function (DUF808) Xcom_19960 PF03109 ABC1 family Xcom_19970 PF00884 Sulfatase Xcom_19975 PF12794 Mechanosensitive ion channel inner membrane domain 1 Xcom_19975 PF12795 Mechanosensitive ion channel porin domain Xcom_19975 PF00924 Mechanosensitive ion channel Xcom_19990 PF01464 Transglycosylase SLT domain Xcom_20005 PF01311 Bacterial export proteins, family 1 Xcom_20015 PF02874 ATP synthase alpha/beta family, beta-barrel domain Xcom_20015 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Xcom_20015 PF18269 T3SS EscN ATPase C-terminal domain Xcom_20030 PF01514 Secretory protein of YscJ/FliF family Xcom_20045 PF01312 FlhB HrpN YscU SpaS Family Xcom_20050 PF00771 FHIPEP family Xcom_20065 PF00813 FliP family Xcom_20070 PF01313 Bacterial export proteins, family 3 Xcom_20105 PF13683 Integrase core domain Xcom_20105 PF13276 HTH-like domain Xcom_20115 PF05819 NolX protein Xcom_20135 PF01040 UbiA prenyltransferase family Xcom_20150 PF06968 Biotin and Thiamin Synthesis associated domain Xcom_20150 PF04055 Radical SAM superfamily Xcom_20155 PF00155 Aminotransferase class I and II Xcom_20165 PF12697 Alpha/beta hydrolase family Xcom_20170 PF00106 short chain dehydrogenase Xcom_20175 PF13649 Methyltransferase domain Xcom_20195 PF00291 Pyridoxal-phosphate dependent enzyme Xcom_20210 PF13932 GidA associated domain Xcom_20210 PF01134 Glucose inhibited division protein A Xcom_20215 PF10677 Protein of unknown function (DUF2490) Xcom_20220 PF07859 alpha/beta hydrolase fold Xcom_20230 PF01614 Bacterial transcriptional regulator Xcom_20230 PF09339 IclR helix-turn-helix domain Xcom_20245 PF02627 Carboxymuconolactone decarboxylase family Xcom_20250 PF12146 Serine aminopeptidase, S33 Xcom_20255 PF10397 Adenylosuccinate lyase C-terminus Xcom_20255 PF00206 Lyase Xcom_20265 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal Xcom_20265 PF00775 Dioxygenase Xcom_20270 PF02803 Thiolase, C-terminal domain Xcom_20270 PF00108 Thiolase, N-terminal domain Xcom_20275 PF01144 Coenzyme A transferase Xcom_20280 PF01144 Coenzyme A transferase Xcom_20285 PF00355 Rieske [2Fe-2S] domain Xcom_20295 PF00455 DeoR C terminal sensor domain Xcom_20295 PF08220 DeoR-like helix-turn-helix domain Xcom_20300 PF01266 FAD dependent oxidoreductase Xcom_20300 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Xcom_20305 PF00230 Major intrinsic protein Xcom_20310 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Xcom_20310 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Xcom_20320 PF01494 FAD binding domain Xcom_20360 PF00920 Dehydratase family Xcom_20370 PF03692 Putative zinc- or iron-chelating domain Xcom_20375 PF00132 Bacterial transferase hexapeptide (six repeats) Xcom_20385 PF07690 Major Facilitator Superfamily Xcom_20390 PF01966 HD domain Xcom_20390 PF11871 Domain of unknown function (DUF3391) Xcom_20420 PF01638 HxlR-like helix-turn-helix Xcom_20425 PF05368 NmrA-like family Xcom_20440 PF03812 2-keto-3-deoxygluconate permease Xcom_20450 PF01717 Cobalamin-independent synthase, Catalytic domain Xcom_20450 PF08267 Cobalamin-independent synthase, N-terminal domain Xcom_20460 PF03358 NADPH-dependent FMN reductase Xcom_20465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_20465 PF03466 LysR substrate binding domain Xcom_20470 PF02677 Epoxyqueuosine reductase QueH Xcom_20485 PF02321 Outer membrane efflux protein Xcom_20490 PF00873 AcrB/AcrD/AcrF family Xcom_20495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Xcom_20495 PF00529 HlyD membrane-fusion protein of T1SS Xcom_20500 PF00512 His Kinase A (phospho-acceptor) domain Xcom_20500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xcom_20500 PF00672 HAMP domain Xcom_20505 PF00486 Transcriptional regulatory protein, C terminal Xcom_20505 PF00072 Response regulator receiver domain Xcom_20510 PF00551 Formyl transferase Xcom_20520 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Xcom_20520 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Xcom_20525 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Xcom_20530 PF02146 Sir2 family Xcom_20535 PF00561 alpha/beta hydrolase fold Xcom_20535 PF08386 TAP-like protein Xcom_20545 PF07690 Major Facilitator Superfamily Xcom_20550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_20550 PF03466 LysR substrate binding domain Xcom_20565 PF01026 TatD related DNase Xcom_20570 PF03466 LysR substrate binding domain Xcom_20570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_20575 PF00355 Rieske [2Fe-2S] domain Xcom_20580 PF00111 2Fe-2S iron-sulfur cluster binding domain Xcom_20590 PF00860 Permease family Xcom_20600 PF01156 Inosine-uridine preferring nucleoside hydrolase Xcom_20610 PF01425 Amidase Xcom_20630 PF00561 alpha/beta hydrolase fold Xcom_20635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_20635 PF03466 LysR substrate binding domain Xcom_20640 PF01546 Peptidase family M20/M25/M40 Xcom_20640 PF07687 Peptidase dimerisation domain Xcom_20645 PF00266 Aminotransferase class-V Xcom_20660 PF01014 Uricase Xcom_20660 PF09349 OHCU decarboxylase Xcom_20665 PF13454 FAD-NAD(P)-binding Xcom_20670 PF00576 HIUase/Transthyretin family Xcom_20675 PF07308 Protein of unknown function (DUF1456) Xcom_20685 PF08482 ATP-dependent helicase C-terminal Xcom_20685 PF00271 Helicase conserved C-terminal domain Xcom_20685 PF00270 DEAD/DEAH box helicase Xcom_20685 PF04408 Helicase associated domain (HA2) Xcom_20695 PF00849 RNA pseudouridylate synthase Xcom_20710 PF00107 Zinc-binding dehydrogenase Xcom_20710 PF16884 N-terminal domain of oxidoreductase Xcom_20730 PF02566 OsmC-like protein Xcom_20735 PF01047 MarR family Xcom_20740 PF03969 AFG1-like ATPase Xcom_20765 PF07683 Cobalamin synthesis protein cobW C-terminal domain Xcom_20765 PF02492 CobW/HypB/UreG, nucleotide-binding domain Xcom_20820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Xcom_20820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Xcom_20820 PF02770 Acyl-CoA dehydrogenase, middle domain Xcom_20825 PF01039 Carboxyl transferase domain Xcom_20830 PF00364 Biotin-requiring enzyme Xcom_20830 PF02785 Biotin carboxylase C-terminal domain Xcom_20830 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Xcom_20830 PF00289 Biotin carboxylase, N-terminal domain Xcom_20835 PF00326 Prolyl oligopeptidase family Xcom_20855 PF00990 Diguanylate cyclase, GGDEF domain Xcom_20860 PF00463 Isocitrate lyase family Xcom_20865 PF01274 Malate synthase Xcom_20870 PF03466 LysR substrate binding domain Xcom_20870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_20875 PF00999 Sodium/hydrogen exchanger family Xcom_20880 PF12833 Helix-turn-helix domain Xcom_20900 PF12706 Beta-lactamase superfamily domain Xcom_20930 PF00849 RNA pseudouridylate synthase Xcom_20975 PF00440 Bacterial regulatory proteins, tetR family Xcom_21035 PF12705 PD-(D/E)XK nuclease superfamily Xcom_21035 PF00580 UvrD/REP helicase N-terminal domain Xcom_21035 PF13361 UvrD-like helicase C-terminal domain Xcom_21040 PF17946 RecC C-terminal domain Xcom_21075 PF00005 ABC transporter Xcom_21080 PF02405 Permease MlaE Xcom_21085 PF02470 MlaD protein Xcom_21090 PF05494 MlaC protein Xcom_21100 PF04333 MlaA lipoprotein Xcom_21110 PF00255 Glutathione peroxidase Xcom_21120 PF02646 RmuC family Xcom_21125 PF08240 Alcohol dehydrogenase GroES-like domain Xcom_21125 PF00107 Zinc-binding dehydrogenase Xcom_21130 PF03466 LysR substrate binding domain Xcom_21130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xcom_21155 PF13520 Amino acid permease Xcom_21160 PF07971 Glycosyl hydrolase family 92 Xcom_21160 PF17678 Glycosyl hydrolase family 92 N-terminal domain Xcom_21165 PF07715 TonB-dependent Receptor Plug Domain Xcom_21165 PF00593 TonB dependent receptor Xcom_21170 PF10947 Protein of unknown function (DUF2628) Xcom_21175 PF00990 Diguanylate cyclase, GGDEF domain Xcom_21180 PF05651 Putative sugar diacid recognition Xcom_21180 PF17853 GGDEF-like domain Xcom_21180 PF13556 PucR C-terminal helix-turn-helix domain Xcom_21185 PF02595 Glycerate kinase family Xcom_21190 PF07690 Major Facilitator Superfamily Xcom_21205 PF10672 S-adenosylmethionine-dependent methyltransferase Xcom_21205 PF17785 PUA-like domain Xcom_21215 PF03741 Integral membrane protein TerC family Xcom_21225 PF01694 Rhomboid family Xcom_21230 PF03009 Glycerophosphoryl diester phosphodiesterase family Xcom_21245 PF01569 PAP2 superfamily Xcom_21250 PF01926 50S ribosome-binding GTPase Xcom_21250 PF12631 MnmE helical domain Xcom_21250 PF10396 GTP-binding protein TrmE N-terminus Xcom_21255 PF01522 Polysaccharide deacetylase Xcom_21260 PF14849 YidC periplasmic domain Xcom_21260 PF02096 60Kd inner membrane protein Xcom_21265 PF00825 Ribonuclease P Xcom_21270 PF00468 Ribosomal protein L34 Xcom_21285 PF13406 Transglycosylase SLT domain Xcom_21330 PF03377 TAL effector repeat Xcom_21350 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Xcom_21435 PF11740 Plasmid replication region DNA-binding N-term Xcom_21440 PF10609 NUBPL iron-transfer P-loop NTPase Xcom_21465 PF01936 NYN domain Xcom_21465 PF09722 Protein of unknown function (DUF2384)