locus-tag class description XAV_00005 PF11638 DnaA N-terminal domain XAV_00005 PF08299 Bacterial dnaA protein helix-turn-helix XAV_00005 PF00308 Bacterial dnaA protein XAV_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain XAV_00010 PF02767 DNA polymerase III beta subunit, central domain XAV_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain XAV_00015 PF02463 RecF/RecN/SMC N terminal domain XAV_00020 PF01751 Toprim domain XAV_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_00020 PF00986 DNA gyrase B subunit, carboxyl terminus XAV_00020 PF00204 DNA gyrase B XAV_00020 PF18053 DNA gyrase B subunit insert domain XAV_00030 PF01435 Peptidase family M48 XAV_00040 PF03544 Gram-negative bacterial TonB protein C-terminal XAV_00045 PF01618 MotA/TolQ/ExbB proton channel family XAV_00050 PF02472 Biopolymer transport protein ExbD/TolR XAV_00055 PF02472 Biopolymer transport protein ExbD/TolR XAV_00060 PF02472 Biopolymer transport protein ExbD/TolR XAV_00065 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ XAV_00090 PF04055 Radical SAM superfamily XAV_00100 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) XAV_00120 PF13180 PDZ domain XAV_00120 PF03572 Peptidase family S41 XAV_00125 PF01551 Peptidase family M23 XAV_00135 PF04389 Peptidase family M28 XAV_00145 PF00150 Cellulase (glycosyl hydrolase family 5) XAV_00150 PF00150 Cellulase (glycosyl hydrolase family 5) XAV_00165 PF00150 Cellulase (glycosyl hydrolase family 5) XAV_00170 PF08240 Alcohol dehydrogenase GroES-like domain XAV_00170 PF00107 Zinc-binding dehydrogenase XAV_00200 PF00085 Thioredoxin XAV_00220 PF13344 Haloacid dehalogenase-like hydrolase XAV_00220 PF00293 NUDIX domain XAV_00240 PF13411 MerR HTH family regulatory protein XAV_00250 PF02146 Sir2 family XAV_00255 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XAV_00260 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XAV_00260 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XAV_00270 PF00551 Formyl transferase XAV_00300 PF02677 Epoxyqueuosine reductase QueH XAV_00305 PF03466 LysR substrate binding domain XAV_00305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XAV_00310 PF03358 NADPH-dependent FMN reductase XAV_00320 PF01717 Cobalamin-independent synthase, Catalytic domain XAV_00320 PF08267 Cobalamin-independent synthase, N-terminal domain XAV_00325 PF03812 2-keto-3-deoxygluconate permease XAV_00340 PF05368 NmrA-like family XAV_00345 PF01638 HxlR-like helix-turn-helix XAV_00365 PF04191 Phospholipid methyltransferase XAV_00380 PF00920 Dehydratase family XAV_00395 PF00132 Bacterial transferase hexapeptide (six repeats) XAV_00410 PF01966 HD domain XAV_00410 PF11871 Domain of unknown function (DUF3391) XAV_00425 PF01609 Transposase DDE domain XAV_00425 PF05598 Transposase domain (DUF772) XAV_00470 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XAV_00470 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XAV_00475 PF00230 Major intrinsic protein XAV_00480 PF01266 FAD dependent oxidoreductase XAV_00480 PF16901 C-terminal domain of alpha-glycerophosphate oxidase XAV_00485 PF00455 DeoR C terminal sensor domain XAV_00485 PF08220 DeoR-like helix-turn-helix domain XAV_00490 PF00970 Oxidoreductase FAD-binding domain XAV_00490 PF00111 2Fe-2S iron-sulfur cluster binding domain XAV_00495 PF00355 Rieske [2Fe-2S] domain XAV_00505 PF01144 Coenzyme A transferase XAV_00510 PF02803 Thiolase, C-terminal domain XAV_00510 PF00108 Thiolase, N-terminal domain XAV_00515 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal XAV_00515 PF00775 Dioxygenase XAV_00520 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal XAV_00520 PF00775 Dioxygenase XAV_00525 PF10397 Adenylosuccinate lyase C-terminus XAV_00525 PF00206 Lyase XAV_00530 PF12146 Serine aminopeptidase, S33 XAV_00535 PF02627 Carboxymuconolactone decarboxylase family XAV_00570 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster XAV_00570 PF07992 Pyridine nucleotide-disulphide oxidoreductase XAV_00575 PF00310 Glutamine amidotransferases class-II XAV_00575 PF01493 GXGXG motif XAV_00575 PF01645 Conserved region in glutamate synthase XAV_00575 PF04898 Glutamate synthase central domain XAV_00605 PF08659 KR domain XAV_00605 PF02801 Beta-ketoacyl synthase, C-terminal domain XAV_00605 PF08240 Alcohol dehydrogenase GroES-like domain XAV_00605 PF16197 Ketoacyl-synthetase C-terminal extension XAV_00605 PF00107 Zinc-binding dehydrogenase XAV_00605 PF00698 Acyl transferase domain XAV_00605 PF00550 Phosphopantetheine attachment site XAV_00605 PF00109 Beta-ketoacyl synthase, N-terminal domain XAV_00605 PF14765 Polyketide synthase dehydratase XAV_00610 PF01553 Acyltransferase XAV_00620 PF00356 Bacterial regulatory proteins, lacI family XAV_00640 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family XAV_00645 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) XAV_00650 PF04337 Protein of unknown function, DUF480 XAV_00670 PF13361 UvrD-like helicase C-terminal domain XAV_00670 PF00580 UvrD/REP helicase N-terminal domain XAV_00675 PF00265 Thymidine kinase XAV_00685 PF05598 Transposase domain (DUF772) XAV_00685 PF01609 Transposase DDE domain XAV_00710 PF00294 pfkB family carbohydrate kinase XAV_00720 PF12241 Trans-2-enoyl-CoA reductase catalytic region XAV_00720 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase XAV_00720 PF07055 Enoyl reductase FAD binding domain XAV_00745 PF01070 FMN-dependent dehydrogenase XAV_00785 PF07715 TonB-dependent Receptor Plug Domain XAV_00785 PF00593 TonB dependent receptor XAV_00790 PF00155 Aminotransferase class I and II XAV_00795 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain XAV_00850 PF04616 Glycosyl hydrolases family 43 XAV_00870 PF00331 Glycosyl hydrolase family 10 XAV_00870 PF03422 Carbohydrate binding module (family 6) XAV_00870 PF00553 Cellulose binding domain XAV_00875 PF00331 Glycosyl hydrolase family 10 XAV_00875 PF00553 Cellulose binding domain XAV_00875 PF03422 Carbohydrate binding module (family 6) XAV_00905 PF05598 Transposase domain (DUF772) XAV_00905 PF01609 Transposase DDE domain XAV_00930 PF01915 Glycosyl hydrolase family 3 C-terminal domain XAV_00930 PF00933 Glycosyl hydrolase family 3 N terminal domain XAV_00930 PF14310 Fibronectin type III-like domain XAV_00930 PF07691 PA14 domain XAV_00935 PF04616 Glycosyl hydrolases family 43 XAV_00935 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XAV_00950 PF03648 Glycosyl hydrolase family 67 N-terminus XAV_00950 PF07488 Glycosyl hydrolase family 67 middle domain XAV_00950 PF07477 Glycosyl hydrolase family 67 C-terminus XAV_00955 PF00356 Bacterial regulatory proteins, lacI family XAV_00965 PF01171 PP-loop family XAV_00970 PF04381 Putative exonuclease, RdgC XAV_00980 PF12697 Alpha/beta hydrolase family XAV_00985 PF00762 Ferrochelatase XAV_00995 PF02416 mttA/Hcf106 family XAV_01000 PF02416 mttA/Hcf106 family XAV_01005 PF00902 Sec-independent protein translocase protein (TatC) XAV_01015 PF00117 Glutamine amidotransferase class-I XAV_01015 PF00958 GMP synthase C terminal domain XAV_01025 PF00437 Type II/IV secretion system protein XAV_01025 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XAV_01030 PF02091 Glycyl-tRNA synthetase alpha subunit XAV_01035 PF02092 Glycyl-tRNA synthetase beta subunit XAV_01035 PF05746 DALR anticodon binding domain XAV_01040 PF13181 Tetratricopeptide repeat XAV_01045 PF07715 TonB-dependent Receptor Plug Domain XAV_01045 PF00593 TonB dependent receptor XAV_01050 PF01103 Surface antigen XAV_01050 PF17243 POTRA domain TamA domain 1 XAV_01055 PF04357 TamB, inner membrane protein subunit of TAM complex XAV_01065 PF00012 Hsp70 protein XAV_01090 PF01011 PQQ enzyme repeat XAV_01090 PF13360 PQQ-like domain XAV_01090 PF13570 PQQ-like domain XAV_01105 PF06165 Glycosyltransferase family 36 XAV_01105 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain XAV_01115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_01115 PF00512 His Kinase A (phospho-acceptor) domain XAV_01120 PF02659 Putative manganese efflux pump XAV_01130 PF12833 Helix-turn-helix domain XAV_01130 PF02311 AraC-like ligand binding domain XAV_01135 PF09339 IclR helix-turn-helix domain XAV_01135 PF01614 Bacterial transcriptional regulator XAV_01155 PF01557 Fumarylacetoacetate (FAA) hydrolase family XAV_01195 PF00196 Bacterial regulatory proteins, luxR family XAV_01195 PF00072 Response regulator receiver domain XAV_01200 PF16177 Acetyl-coenzyme A synthetase N-terminus XAV_01200 PF00501 AMP-binding enzyme XAV_01200 PF13193 AMP-binding enzyme C-terminal domain XAV_01215 PF00474 Sodium:solute symporter family XAV_01220 PF03372 Endonuclease/Exonuclease/phosphatase family XAV_01230 PF04226 Transglycosylase associated protein XAV_01235 PF01648 4'-phosphopantetheinyl transferase superfamily XAV_01240 PF09423 PhoD-like phosphatase XAV_01240 PF16655 PhoD-like phosphatase, N-terminal domain XAV_01245 PF09423 PhoD-like phosphatase XAV_01245 PF16655 PhoD-like phosphatase, N-terminal domain XAV_01250 PF02527 rRNA small subunit methyltransferase G XAV_01285 PF00830 Ribosomal L28 family XAV_01290 PF00471 Ribosomal protein L33 XAV_01295 PF04909 Amidohydrolase XAV_01300 PF04303 PrpF protein XAV_01305 PF03737 Aldolase/RraA XAV_01310 PF03466 LysR substrate binding domain XAV_01310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XAV_01315 PF13091 PLD-like domain XAV_01315 PF13396 Phospholipase_D-nuclease N-terminal XAV_01330 PF00580 UvrD/REP helicase N-terminal domain XAV_01330 PF13361 UvrD-like helicase C-terminal domain XAV_01345 PF14602 Hexapeptide repeat of succinyl-transferase XAV_01345 PF12464 Maltose acetyltransferase XAV_01380 PF07690 Major Facilitator Superfamily XAV_01420 PF03006 Haemolysin-III related XAV_01425 PF00270 DEAD/DEAH box helicase XAV_01425 PF09369 Domain of unknown function (DUF1998) XAV_01425 PF00271 Helicase conserved C-terminal domain XAV_01490 PF01614 Bacterial transcriptional regulator XAV_01490 PF09339 IclR helix-turn-helix domain XAV_01505 PF01134 Glucose inhibited division protein A XAV_01505 PF13932 GidA associated domain XAV_01515 PF00291 Pyridoxal-phosphate dependent enzyme XAV_01535 PF13649 Methyltransferase domain XAV_01545 PF12697 Alpha/beta hydrolase family XAV_01555 PF00155 Aminotransferase class I and II XAV_01560 PF04055 Radical SAM superfamily XAV_01560 PF06968 Biotin and Thiamin Synthesis associated domain XAV_01570 PF01040 UbiA prenyltransferase family XAV_01585 PF05819 NolX protein XAV_01630 PF01313 Bacterial export proteins, family 3 XAV_01635 PF00813 FliP family XAV_01650 PF00771 FHIPEP family XAV_01655 PF01312 FlhB HrpN YscU SpaS Family XAV_01670 PF01514 Secretory protein of YscJ/FliF family XAV_01685 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XAV_01685 PF02874 ATP synthase alpha/beta family, beta-barrel domain XAV_01685 PF18269 T3SS EscN ATPase C-terminal domain XAV_01695 PF01311 Bacterial export proteins, family 1 XAV_01700 PF03958 Bacterial type II/III secretion system short domain XAV_01700 PF00263 Bacterial type II and III secretion system protein XAV_01710 PF01464 Transglycosylase SLT domain XAV_01715 PF05598 Transposase domain (DUF772) XAV_01715 PF01609 Transposase DDE domain XAV_01725 PF12794 Mechanosensitive ion channel inner membrane domain 1 XAV_01725 PF00924 Mechanosensitive ion channel XAV_01725 PF12795 Mechanosensitive ion channel porin domain XAV_01740 PF05598 Transposase domain (DUF772) XAV_01740 PF01609 Transposase DDE domain XAV_01775 PF08845 Toxin SymE, type I toxin-antitoxin system XAV_01780 PF07262 CDI immunity protein XAV_01790 PF05860 haemagglutination activity domain XAV_01790 PF04829 Pre-toxin domain with VENN motif XAV_01790 PF13332 Hemagglutinin repeat XAV_01790 PF13018 Extended Signal Peptide of Type V secretion system XAV_01795 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB XAV_01795 PF17287 POTRA domain XAV_01795 PF08479 POTRA domain, ShlB-type XAV_01825 PF03109 ABC1 family XAV_01830 PF05661 Protein of unknown function (DUF808) XAV_01840 PF00990 Diguanylate cyclase, GGDEF domain XAV_01840 PF00072 Response regulator receiver domain XAV_01850 PF00128 Alpha amylase, catalytic domain XAV_01850 PF02806 Alpha amylase, C-terminal all-beta domain XAV_01850 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XAV_01855 PF11941 Domain of unknown function (DUF3459) XAV_01855 PF00128 Alpha amylase, catalytic domain XAV_01855 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XAV_01860 PF02446 4-alpha-glucanotransferase XAV_01865 PF00128 Alpha amylase, catalytic domain XAV_01875 PF00128 Alpha amylase, catalytic domain XAV_01875 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XAV_01880 PF13460 NAD(P)H-binding XAV_01895 PF03150 Di-haem cytochrome c peroxidase XAV_01950 PF01609 Transposase DDE domain XAV_01950 PF05598 Transposase domain (DUF772) XAV_02005 PF00271 Helicase conserved C-terminal domain XAV_02005 PF00270 DEAD/DEAH box helicase XAV_02010 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XAV_02010 PF00364 Biotin-requiring enzyme XAV_02010 PF02817 e3 binding domain XAV_02035 PF03301 Tryptophan 2,3-dioxygenase XAV_02040 PF00854 POT family XAV_02050 PF01047 MarR family XAV_02055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XAV_02060 PF04480 Protein of unknown function (DUF559) XAV_02065 PF04209 homogentisate 1,2-dioxygenase XAV_02085 PF03334 Na+/H+ antiporter subunit XAV_02090 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) XAV_02100 PF00361 Proton-conducting membrane transporter XAV_02105 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XAV_02110 PF13244 Domain of unknown function (DUF4040) XAV_02110 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter XAV_02110 PF00361 Proton-conducting membrane transporter XAV_02110 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XAV_02125 PF01483 Proprotein convertase P-domain XAV_02125 PF02868 Thermolysin metallopeptidase, alpha-helical domain XAV_02125 PF01447 Thermolysin metallopeptidase, catalytic domain XAV_02125 PF07504 Fungalysin/Thermolysin Propeptide Motif XAV_02140 PF01259 SAICAR synthetase XAV_02145 PF00226 DnaJ domain XAV_02145 PF05099 Tellurite resistance protein TerB XAV_02155 PF00834 Ribulose-phosphate 3 epimerase family XAV_02165 PF00781 Diacylglycerol kinase catalytic domain XAV_02170 PF04715 Anthranilate synthase component I, N terminal region XAV_02170 PF00425 chorismate binding enzyme XAV_02185 PF12008 Type I restriction and modification enzyme - subunit R C terminal XAV_02185 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) XAV_02185 PF18766 SWI2/SNF2 ATPase XAV_02205 PF02384 N-6 DNA Methylase XAV_02205 PF12161 HsdM N-terminal domain XAV_02210 PF00117 Glutamine amidotransferase class-I XAV_02220 PF00591 Glycosyl transferase family, a/b domain XAV_02220 PF02885 Glycosyl transferase family, helical bundle domain XAV_02225 PF00218 Indole-3-glycerol phosphate synthase XAV_02235 PF00027 Cyclic nucleotide-binding domain XAV_02235 PF00325 Bacterial regulatory proteins, crp family XAV_02240 PF02675 S-adenosylmethionine decarboxylase XAV_02245 PF00893 Small Multidrug Resistance protein XAV_02250 PF03232 Ubiquinone biosynthesis protein COQ7 XAV_02255 PF00572 Ribosomal protein L13 XAV_02260 PF00380 Ribosomal protein S9/S16 XAV_02275 PF00293 NUDIX domain XAV_02285 PF00210 Ferritin-like domain XAV_02290 PF00672 HAMP domain XAV_02290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_02290 PF00512 His Kinase A (phospho-acceptor) domain XAV_02290 PF01627 Hpt domain XAV_02290 PF00072 Response regulator receiver domain XAV_02290 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XAV_02295 PF00072 Response regulator receiver domain XAV_02295 PF00486 Transcriptional regulatory protein, C terminal XAV_02315 PF01521 Iron-sulphur cluster biosynthesis XAV_02325 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain XAV_02325 PF00293 NUDIX domain XAV_02325 PF09297 NADH pyrophosphatase zinc ribbon domain XAV_02330 PF03186 CobD/Cbib protein XAV_02330 PF17113 Regulatory signalling modulator protein AmpE XAV_02345 PF07690 Major Facilitator Superfamily XAV_02350 PF03466 LysR substrate binding domain XAV_02350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XAV_02355 PF07690 Major Facilitator Superfamily XAV_02360 PF12805 FUSC-like inner membrane protein yccS XAV_02380 PF00005 ABC transporter XAV_02380 PF02687 FtsX-like permease family XAV_02380 PF12704 MacB-like periplasmic core domain XAV_02385 PF02843 Phosphoribosylglycinamide synthetase, C domain XAV_02385 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain XAV_02385 PF02844 Phosphoribosylglycinamide synthetase, N domain XAV_02390 PF01808 AICARFT/IMPCHase bienzyme XAV_02390 PF02142 MGS-like domain XAV_02405 PF02954 Bacterial regulatory protein, Fis family XAV_02415 PF01381 Helix-turn-helix XAV_02440 PF00289 Biotin carboxylase, N-terminal domain XAV_02440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XAV_02440 PF02785 Biotin carboxylase C-terminal domain XAV_02450 PF00364 Biotin-requiring enzyme XAV_02455 PF01220 Dehydroquinase class II XAV_02465 PF02683 Cytochrome C biogenesis protein transmembrane region XAV_02465 PF11412 Disulphide bond corrector protein DsbC XAV_02470 PF03091 CutA1 divalent ion tolerance protein XAV_02480 PF00166 Chaperonin 10 Kd subunit XAV_02485 PF00118 TCP-1/cpn60 chaperonin family XAV_02500 PF07715 TonB-dependent Receptor Plug Domain XAV_02500 PF00593 TonB dependent receptor XAV_02505 PF00793 DAHP synthetase I family XAV_02520 PF08450 SMP-30/Gluconolactonase/LRE-like region XAV_02530 PF03710 Glutamate-ammonia ligase adenylyltransferase XAV_02530 PF08335 GlnD PII-uridylyltransferase XAV_02575 PF00881 Nitroreductase family XAV_02580 PF04264 YceI-like domain XAV_02605 PF00239 Resolvase, N terminal domain XAV_02605 PF02796 Helix-turn-helix domain of resolvase XAV_02645 PF00456 Transketolase, thiamine diphosphate binding domain XAV_02645 PF17831 Pyruvate dehydrogenase E1 component middle domain XAV_02650 PF07745 Glycosyl hydrolase family 53 XAV_02685 PF08021 Siderophore-interacting FAD-binding domain XAV_02685 PF04954 Siderophore-interacting protein XAV_02740 PF13823 Alcohol dehydrogenase GroES-associated XAV_02740 PF08240 Alcohol dehydrogenase GroES-like domain XAV_02740 PF00107 Zinc-binding dehydrogenase XAV_02790 PF01654 Cytochrome bd terminal oxidase subunit I XAV_02800 PF00158 Sigma-54 interaction domain XAV_02800 PF00072 Response regulator receiver domain XAV_02800 PF02954 Bacterial regulatory protein, Fis family XAV_02835 PF05067 Manganese containing catalase XAV_02840 PF05974 Domain of unknown function (DUF892) XAV_02865 PF00072 Response regulator receiver domain XAV_02865 PF04397 LytTr DNA-binding domain XAV_02870 PF13520 Amino acid permease XAV_02890 PF01431 Peptidase family M13 XAV_02890 PF05649 Peptidase family M13 XAV_02900 PF00248 Aldo/keto reductase family XAV_02905 PF03358 NADPH-dependent FMN reductase XAV_02920 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XAV_02930 PF03167 Uracil DNA glycosylase superfamily XAV_02935 PF02469 Fasciclin domain XAV_02940 PF00999 Sodium/hydrogen exchanger family XAV_02945 PF00005 ABC transporter XAV_02950 PF01061 ABC-2 type transporter XAV_02975 PF13677 Membrane MotB of proton-channel complex MotA/MotB XAV_02975 PF00691 OmpA family XAV_02980 PF01618 MotA/TolQ/ExbB proton channel family XAV_02990 PF01641 SelR domain XAV_03000 PF01037 Lrp/AsnC ligand binding domain XAV_03005 PF01266 FAD dependent oxidoreductase XAV_03010 PF00842 Alanine racemase, C-terminal domain XAV_03010 PF01168 Alanine racemase, N-terminal domain XAV_03030 PF00512 His Kinase A (phospho-acceptor) domain XAV_03030 PF00989 PAS fold XAV_03030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_03040 PF07995 Glucose / Sorbosone dehydrogenase XAV_03050 PF08468 Methyltransferase small domain N-terminal XAV_03050 PF05175 Methyltransferase small domain XAV_03055 PF00849 RNA pseudouridylate synthase XAV_03055 PF01479 S4 domain XAV_03060 PF13419 Haloacid dehalogenase-like hydrolase XAV_03095 PF04461 Protein of unknown function (DUF520) XAV_03100 PF00892 EamA-like transporter family XAV_03105 PF00005 ABC transporter XAV_03105 PF09383 NIL domain XAV_03110 PF00528 Binding-protein-dependent transport system inner membrane component XAV_03115 PF03180 NLPA lipoprotein XAV_03145 PF02817 e3 binding domain XAV_03145 PF00364 Biotin-requiring enzyme XAV_03145 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XAV_03155 PF07992 Pyridine nucleotide-disulphide oxidoreductase XAV_03155 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XAV_03175 PF00119 ATP synthase A chain XAV_03180 PF00137 ATP synthase subunit C XAV_03185 PF00430 ATP synthase B/B' CF(0) XAV_03190 PF00213 ATP synthase delta (OSCP) subunit XAV_03195 PF00306 ATP synthase alpha/beta chain, C terminal domain XAV_03195 PF02874 ATP synthase alpha/beta family, beta-barrel domain XAV_03195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XAV_03200 PF00231 ATP synthase XAV_03205 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XAV_03205 PF02874 ATP synthase alpha/beta family, beta-barrel domain XAV_03210 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain XAV_03210 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain XAV_03225 PF12804 MobA-like NTP transferase domain XAV_03225 PF00132 Bacterial transferase hexapeptide (six repeats) XAV_03225 PF14602 Hexapeptide repeat of succinyl-transferase XAV_03240 PF01380 SIS domain XAV_03280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XAV_03285 PF05275 Copper resistance protein B precursor (CopB) XAV_03290 PF07731 Multicopper oxidase XAV_03290 PF07732 Multicopper oxidase XAV_03290 PF00394 Multicopper oxidase XAV_03305 PF01432 Peptidase family M3 XAV_03320 PF02801 Beta-ketoacyl synthase, C-terminal domain XAV_03320 PF00109 Beta-ketoacyl synthase, N-terminal domain XAV_03325 PF07977 FabA-like domain XAV_03330 PF00817 impB/mucB/samB family XAV_03330 PF11799 impB/mucB/samB family C-terminal domain XAV_03335 PF13419 Haloacid dehalogenase-like hydrolase XAV_03345 PF13185 GAF domain XAV_03360 PF01242 6-pyruvoyl tetrahydropterin synthase XAV_03365 PF00270 DEAD/DEAH box helicase XAV_03365 PF00271 Helicase conserved C-terminal domain XAV_03385 PF00437 Type II/IV secretion system protein XAV_03405 PF00291 Pyridoxal-phosphate dependent enzyme XAV_03405 PF00571 CBS domain XAV_03410 PF01053 Cys/Met metabolism PLP-dependent enzyme XAV_03415 PF01061 ABC-2 type transporter XAV_03420 PF00005 ABC transporter XAV_03420 PF14524 Wzt C-terminal domain XAV_03430 PF00535 Glycosyl transferase family 2 XAV_03470 PF01370 NAD dependent epimerase/dehydratase family XAV_03480 PF00106 short chain dehydrogenase XAV_03485 PF04030 D-arabinono-1,4-lactone oxidase XAV_03485 PF01565 FAD binding domain XAV_03490 PF01040 UbiA prenyltransferase family XAV_03500 PF00766 Electron transfer flavoprotein FAD-binding domain XAV_03500 PF01012 Electron transfer flavoprotein domain XAV_03505 PF01012 Electron transfer flavoprotein domain XAV_03510 PF16363 GDP-mannose 4,6 dehydratase XAV_03515 PF00483 Nucleotidyl transferase XAV_03520 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase XAV_03525 PF04321 RmlD substrate binding domain XAV_03530 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XAV_03530 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XAV_03530 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XAV_03535 PF01050 Mannose-6-phosphate isomerase XAV_03535 PF00483 Nucleotidyl transferase XAV_03540 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XAV_03540 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XAV_03540 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XAV_03540 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XAV_03545 PF01144 Coenzyme A transferase XAV_03550 PF01144 Coenzyme A transferase XAV_03555 PF05045 Rhamnan synthesis protein F XAV_03555 PF14307 Glycosyltransferase WbsX XAV_03575 PF02470 MlaD protein XAV_03575 PF03886 ABC-type transport auxiliary lipoprotein component XAV_03580 PF00005 ABC transporter XAV_03585 PF02405 Permease MlaE XAV_03595 PF00816 H-NS histone family XAV_03600 PF03129 Anticodon binding domain XAV_03600 PF04073 Aminoacyl-tRNA editing domain XAV_03600 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XAV_03610 PF01066 CDP-alcohol phosphatidyltransferase XAV_03625 PF00544 Pectate lyase XAV_03630 PF01464 Transglycosylase SLT domain XAV_03630 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain XAV_03645 PF08264 Anticodon-binding domain of tRNA XAV_03645 PF10458 Valyl tRNA synthetase tRNA binding arm XAV_03645 PF00133 tRNA synthetases class I (I, L, M and V) XAV_03665 PF02789 Cytosol aminopeptidase family, N-terminal domain XAV_03665 PF00883 Cytosol aminopeptidase family, catalytic domain XAV_03675 PF03739 Lipopolysaccharide export system permease LptF/LptG XAV_03690 PF00589 Phage integrase family XAV_03690 PF02899 Phage integrase, N-terminal SAM-like domain XAV_03715 PF10411 Disulfide bond isomerase protein N-terminus XAV_03715 PF13098 Thioredoxin-like domain XAV_03720 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal XAV_03720 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain XAV_03720 PF02769 AIR synthase related protein, C-terminal domain XAV_03730 PF05658 Head domain of trimeric autotransporter adhesin XAV_03730 PF05662 Coiled stalk of trimeric autotransporter adhesin XAV_03730 PF13018 Extended Signal Peptide of Type V secretion system XAV_03730 PF03895 YadA-like membrane anchor domain XAV_03735 PF00082 Subtilase family XAV_03735 PF04151 Bacterial pre-peptidase C-terminal domain XAV_03750 PF04151 Bacterial pre-peptidase C-terminal domain XAV_03750 PF00082 Subtilase family XAV_03755 PF04151 Bacterial pre-peptidase C-terminal domain XAV_03755 PF00082 Subtilase family XAV_03760 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XAV_03760 PF00437 Type II/IV secretion system protein XAV_03765 PF00482 Type II secretion system (T2SS), protein F XAV_03770 PF08334 Type II secretion system (T2SS), protein G XAV_03775 PF12019 Type II transport protein GspH XAV_03780 PF07963 Prokaryotic N-terminal methylation motif XAV_03790 PF03934 Type II secretion system (T2SS), protein K XAV_03795 PF05137 Fimbrial assembly protein (PilN) XAV_03800 PF10741 Type II secretion system (T2SS), protein M subtype b XAV_03810 PF03958 Bacterial type II/III secretion system short domain XAV_03810 PF00263 Bacterial type II and III secretion system protein XAV_03820 PF00392 Bacterial regulatory proteins, gntR family XAV_03820 PF07702 UTRA domain XAV_03830 PF07715 TonB-dependent Receptor Plug Domain XAV_03830 PF00593 TonB dependent receptor XAV_03865 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain XAV_03865 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family XAV_03900 PF03960 ArsC family XAV_03905 PF01327 Polypeptide deformylase XAV_03910 PF02645 Uncharacterised protein, DegV family COG1307 XAV_03955 PF00462 Glutaredoxin XAV_03960 PF01522 Polysaccharide deacetylase XAV_03980 PF03193 RsgA GTPase XAV_03995 PF00128 Alpha amylase, catalytic domain XAV_04010 PF00356 Bacterial regulatory proteins, lacI family XAV_04015 PF00106 short chain dehydrogenase XAV_04020 PF03600 Citrate transporter XAV_04030 PF00486 Transcriptional regulatory protein, C terminal XAV_04030 PF00072 Response regulator receiver domain XAV_04035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_04035 PF08521 Two-component sensor kinase N-terminal XAV_04035 PF00512 His Kinase A (phospho-acceptor) domain XAV_04045 PF00196 Bacterial regulatory proteins, luxR family XAV_04045 PF00072 Response regulator receiver domain XAV_04060 PF00248 Aldo/keto reductase family XAV_04065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XAV_04065 PF03466 LysR substrate binding domain XAV_04075 PF07690 Major Facilitator Superfamily XAV_04080 PF02743 Cache domain XAV_04080 PF00512 His Kinase A (phospho-acceptor) domain XAV_04080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_04095 PF00375 Sodium:dicarboxylate symporter family XAV_04100 PF00390 Malic enzyme, N-terminal domain XAV_04100 PF03949 Malic enzyme, NAD binding domain XAV_04100 PF01515 Phosphate acetyl/butaryl transferase XAV_04110 PF01381 Helix-turn-helix XAV_04110 PF00717 Peptidase S24-like XAV_04115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XAV_04115 PF00529 HlyD membrane-fusion protein of T1SS XAV_04135 PF00664 ABC transporter transmembrane region XAV_04135 PF00005 ABC transporter XAV_04135 PF03412 Peptidase C39 family XAV_04170 PF03279 Bacterial lipid A biosynthesis acyltransferase XAV_04175 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) XAV_04180 PF02321 Outer membrane efflux protein XAV_04210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XAV_04215 PF00330 Aconitase family (aconitate hydratase) XAV_04220 PF00694 Aconitase C-terminal domain XAV_04230 PF00180 Isocitrate/isopropylmalate dehydrogenase XAV_04235 PF00593 TonB dependent receptor XAV_04235 PF07715 TonB-dependent Receptor Plug Domain XAV_04240 PF00682 HMGL-like XAV_04240 PF08502 LeuA allosteric (dimerisation) domain XAV_04245 PF00291 Pyridoxal-phosphate dependent enzyme XAV_04255 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XAV_04255 PF00205 Thiamine pyrophosphate enzyme, central domain XAV_04255 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XAV_04260 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain XAV_04260 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain XAV_04270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XAV_04270 PF02203 Tar ligand binding domain homologue XAV_04270 PF00672 HAMP domain XAV_04280 PF13667 ThiC-associated domain XAV_04280 PF01964 Radical SAM ThiC family XAV_04285 PF18500 CadC C-terminal domain 1 XAV_04285 PF00486 Transcriptional regulatory protein, C terminal XAV_04290 PF12833 Helix-turn-helix domain XAV_04295 PF07715 TonB-dependent Receptor Plug Domain XAV_04295 PF00593 TonB dependent receptor XAV_04305 PF00719 Inorganic pyrophosphatase XAV_04315 PF03030 Inorganic H+ pyrophosphatase XAV_04365 PF00365 Phosphofructokinase XAV_04375 PF01225 Mur ligase family, catalytic domain XAV_04375 PF02875 Mur ligase family, glutamate ligase domain XAV_04375 PF08245 Mur ligase middle domain XAV_04385 PF01062 Bestrophin, RFP-TM, chloride channel XAV_04390 PF01569 PAP2 superfamily XAV_04420 PF00202 Aminotransferase class-III XAV_04435 PF01593 Flavin containing amine oxidoreductase XAV_04440 PF00034 Cytochrome c XAV_04440 PF13442 Cytochrome C oxidase, cbb3-type, subunit III XAV_04450 PF00155 Aminotransferase class I and II XAV_04455 PF00127 Copper binding proteins, plastocyanin/azurin family XAV_04465 PF00202 Aminotransferase class-III XAV_04475 PF02581 Thiamine monophosphate synthase XAV_04480 PF00301 Rubredoxin XAV_04485 PF13369 Transglutaminase-like superfamily XAV_04495 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) XAV_04505 PF01812 5-formyltetrahydrofolate cyclo-ligase family XAV_04515 PF05164 Cell division protein ZapA XAV_04525 PF03695 Uncharacterised protein family (UPF0149) XAV_04530 PF05195 Aminopeptidase P, N-terminal domain XAV_04530 PF00557 Metallopeptidase family M24 XAV_04540 PF00557 Metallopeptidase family M24 XAV_04555 PF04055 Radical SAM superfamily XAV_04555 PF06969 HemN C-terminal domain XAV_04560 PF01725 Ham1 family XAV_04570 PF03725 3' exoribonuclease family, domain 2 XAV_04570 PF01138 3' exoribonuclease family, domain 1 XAV_04575 PF03755 YicC-like family, N-terminal region XAV_04575 PF08340 Domain of unknown function (DUF1732) XAV_04580 PF00625 Guanylate kinase XAV_04585 PF01192 RNA polymerase Rpb6 XAV_04590 PF02824 TGS domain XAV_04590 PF13291 ACT domain XAV_04590 PF04607 Region found in RelA / SpoT proteins XAV_04595 PF01042 Endoribonuclease L-PSP XAV_04600 PF00271 Helicase conserved C-terminal domain XAV_04600 PF00270 DEAD/DEAH box helicase XAV_04600 PF17191 RecG wedge domain XAV_04605 PF01156 Inosine-uridine preferring nucleoside hydrolase XAV_04610 PF01197 Ribosomal protein L31 XAV_04615 PF00285 Citrate synthase, C-terminal domain XAV_04625 PF17092 Penicillin-binding protein OB-like domain XAV_04625 PF00912 Transglycosylase XAV_04625 PF00905 Penicillin binding protein transpeptidase domain XAV_04650 PF00263 Bacterial type II and III secretion system protein XAV_04650 PF11741 AMIN domain XAV_04650 PF03958 Bacterial type II/III secretion system short domain XAV_04650 PF07660 Secretin and TonB N terminus short domain XAV_04655 PF07726 ATPase family associated with various cellular activities (AAA) XAV_04655 PF17863 AAA lid domain XAV_04670 PF13519 von Willebrand factor type A domain XAV_04675 PF07584 Aerotolerance regulator N-terminal XAV_04675 PF00092 von Willebrand factor type A domain XAV_04685 PF00375 Sodium:dicarboxylate symporter family XAV_04690 PF02779 Transketolase, pyrimidine binding domain XAV_04690 PF02780 Transketolase, C-terminal domain XAV_04690 PF00456 Transketolase, thiamine diphosphate binding domain XAV_04695 PF00593 TonB dependent receptor XAV_04695 PF07715 TonB-dependent Receptor Plug Domain XAV_04700 PF04225 Opacity-associated protein A LysM-like domain XAV_04700 PF01551 Peptidase family M23 XAV_04705 PF03734 L,D-transpeptidase catalytic domain XAV_04705 PF01476 LysM domain XAV_04730 PF03377 TAL effector repeat XAV_04745 PF13193 AMP-binding enzyme C-terminal domain XAV_04745 PF00501 AMP-binding enzyme XAV_04780 PF00005 ABC transporter XAV_04780 PF03459 TOBE domain XAV_04785 PF00528 Binding-protein-dependent transport system inner membrane component XAV_04795 PF04273 Putative phosphatase (DUF442) XAV_04795 PF00753 Metallo-beta-lactamase superfamily XAV_04810 PF03922 OmpW family XAV_04820 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain XAV_04820 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XAV_04850 PF00162 Phosphoglycerate kinase XAV_04860 PF00224 Pyruvate kinase, barrel domain XAV_04860 PF02887 Pyruvate kinase, alpha/beta domain XAV_04865 PF00274 Fructose-bisphosphate aldolase class-I XAV_04870 PF01661 Macro domain XAV_04885 PF00291 Pyridoxal-phosphate dependent enzyme XAV_04890 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XAV_04890 PF10414 Sirohaem synthase dimerisation region XAV_04890 PF14824 Sirohaem biosynthesis protein central XAV_04895 PF03466 LysR substrate binding domain XAV_04895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XAV_04910 PF00512 His Kinase A (phospho-acceptor) domain XAV_04910 PF01627 Hpt domain XAV_04910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_04910 PF00072 Response regulator receiver domain XAV_04930 PF01507 Phosphoadenosine phosphosulfate reductase family XAV_04935 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XAV_04935 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XAV_04940 PF00667 FAD binding domain XAV_04940 PF00258 Flavodoxin XAV_04940 PF00175 Oxidoreductase NAD-binding domain XAV_04945 PF01507 Phosphoadenosine phosphosulfate reductase family XAV_04950 PF00009 Elongation factor Tu GTP binding domain XAV_04955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XAV_04955 PF00529 HlyD membrane-fusion protein of T1SS XAV_04960 PF00873 AcrB/AcrD/AcrF family XAV_04975 PF08032 RNA 2'-O ribose methyltransferase substrate binding XAV_04975 PF00588 SpoU rRNA Methylase family XAV_04980 PF00135 Carboxylesterase family XAV_05015 PF01741 Large-conductance mechanosensitive channel, MscL XAV_05020 PF01557 Fumarylacetoacetate (FAA) hydrolase family XAV_05035 PF03600 Citrate transporter XAV_05035 PF02080 TrkA-C domain XAV_05040 PF02390 Putative methyltransferase XAV_05045 PF05690 Thiazole biosynthesis protein ThiG XAV_05055 PF03797 Autotransporter beta-domain XAV_05055 PF00657 GDSL-like Lipase/Acylhydrolase XAV_05095 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XAV_05095 PF00128 Alpha amylase, catalytic domain XAV_05100 PF18030 RimK PreATP-grasp domain XAV_05100 PF08443 RimK-like ATP-grasp domain XAV_05110 PF00072 Response regulator receiver domain XAV_05110 PF00486 Transcriptional regulatory protein, C terminal XAV_05115 PF00512 His Kinase A (phospho-acceptor) domain XAV_05115 PF00989 PAS fold XAV_05115 PF11808 Phosphate regulon sensor protein PhoR XAV_05115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_05140 PF01121 Dephospho-CoA kinase XAV_05145 PF01478 Type IV leader peptidase family XAV_05145 PF06750 Bacterial Peptidase A24 N-terminal domain XAV_05150 PF00482 Type II secretion system (T2SS), protein F XAV_05155 PF07963 Prokaryotic N-terminal methylation motif XAV_05155 PF00114 Pilin (bacterial filament) XAV_05160 PF07963 Prokaryotic N-terminal methylation motif XAV_05160 PF00114 Pilin (bacterial filament) XAV_05165 PF00437 Type II/IV secretion system protein XAV_05165 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XAV_05170 PF00072 Response regulator receiver domain XAV_05170 PF02954 Bacterial regulatory protein, Fis family XAV_05170 PF00158 Sigma-54 interaction domain XAV_05175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_05175 PF00512 His Kinase A (phospho-acceptor) domain XAV_05180 PF00549 CoA-ligase XAV_05180 PF08442 ATP-grasp domain XAV_05185 PF02629 CoA binding domain XAV_05185 PF00549 CoA-ligase XAV_05200 PF02540 NAD synthase XAV_05200 PF00795 Carbon-nitrogen hydrolase XAV_05210 PF13525 Outer membrane lipoprotein XAV_05215 PF00849 RNA pseudouridylate synthase XAV_05230 PF04134 Protein of unknown function, DUF393 XAV_05240 PF03377 TAL effector repeat XAV_05265 PF12169 DNA polymerase III subunits gamma and tau domain III XAV_05265 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding XAV_05265 PF12170 DNA polymerase III tau subunit V interacting with alpha XAV_05270 PF02575 YbaB/EbfC DNA-binding family XAV_05275 PF02132 RecR protein XAV_05275 PF13662 Toprim domain XAV_05280 PF01230 HIT domain XAV_05290 PF01841 Transglutaminase-like superfamily XAV_05290 PF11992 Domain of unknown function (DUF3488) XAV_05290 PF13559 Domain of unknown function (DUF4129) XAV_05300 PF17863 AAA lid domain XAV_05300 PF07726 ATPase family associated with various cellular activities (AAA) XAV_05315 PF02545 Maf-like protein XAV_05320 PF02620 Large ribosomal RNA subunit accumulation protein YceD XAV_05325 PF01783 Ribosomal L32p protein family XAV_05330 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XAV_05330 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XAV_05340 PF00698 Acyl transferase domain XAV_05350 PF00550 Phosphopantetheine attachment site XAV_05355 PF00109 Beta-ketoacyl synthase, N-terminal domain XAV_05355 PF02801 Beta-ketoacyl synthase, C-terminal domain XAV_05360 PF00425 chorismate binding enzyme XAV_05360 PF04715 Anthranilate synthase component I, N terminal region XAV_05365 PF02618 YceG-like family XAV_05370 PF09115 DNA polymerase III, delta subunit, C terminal XAV_05395 PF06506 Propionate catabolism activator XAV_05395 PF00158 Sigma-54 interaction domain XAV_05395 PF02954 Bacterial regulatory protein, Fis family XAV_05405 PF00285 Citrate synthase, C-terminal domain XAV_05410 PF00330 Aconitase family (aconitate hydratase) XAV_05410 PF00694 Aconitase C-terminal domain XAV_05415 PF04303 PrpF protein XAV_05420 PF00593 TonB dependent receptor XAV_05420 PF07715 TonB-dependent Receptor Plug Domain XAV_05455 PF08534 Redoxin XAV_05465 PF00226 DnaJ domain XAV_05465 PF01556 DnaJ C terminal domain XAV_05470 PF00072 Response regulator receiver domain XAV_05475 PF12221 Bacterial membrane protein N terminal XAV_05475 PF01145 SPFH domain / Band 7 family XAV_05480 PF01145 SPFH domain / Band 7 family XAV_05485 PF00709 Adenylosuccinate synthetase XAV_05490 PF11838 ERAP1-like C-terminal domain XAV_05490 PF01433 Peptidase family M1 domain XAV_05515 PF04377 Arginine-tRNA-protein transferase, C terminus XAV_05515 PF04376 Arginine-tRNA-protein transferase, N terminus XAV_05545 PF00378 Enoyl-CoA hydratase/isomerase XAV_05560 PF00005 ABC transporter XAV_05560 PF17755 UvrA DNA-binding domain XAV_05560 PF17760 UvrA interaction domain XAV_05565 PF00829 Ribosomal prokaryotic L21 protein XAV_05570 PF01016 Ribosomal L27 protein XAV_05575 PF01018 GTP1/OBG XAV_05575 PF01926 50S ribosome-binding GTPase XAV_05580 PF01649 Ribosomal protein S20 XAV_05585 PF03023 Lipid II flippase MurJ XAV_05590 PF06574 FAD synthetase XAV_05590 PF01687 Riboflavin kinase XAV_05595 PF00133 tRNA synthetases class I (I, L, M and V) XAV_05595 PF06827 Zinc finger found in FPG and IleRS XAV_05595 PF08264 Anticodon-binding domain of tRNA XAV_05600 PF01252 Signal peptidase (SPase) II XAV_05605 PF02401 LytB protein XAV_05615 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XAV_05615 PF06481 COX Aromatic Rich Motif XAV_05620 PF00115 Cytochrome C and Quinol oxidase polypeptide I XAV_05625 PF00510 Cytochrome c oxidase subunit III XAV_05630 PF03626 Prokaryotic Cytochrome C oxidase subunit IV XAV_05640 PF18073 Rubredoxin metal binding domain XAV_05645 PF05656 Protein of unknown function (DUF805) XAV_05655 PF12833 Helix-turn-helix domain XAV_05675 PF08678 Rsbr N terminal XAV_05675 PF01740 STAS domain XAV_05680 PF01740 STAS domain XAV_05685 PF13581 Histidine kinase-like ATPase domain XAV_05695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_05695 PF00512 His Kinase A (phospho-acceptor) domain XAV_05700 PF00072 Response regulator receiver domain XAV_05700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_05700 PF00512 His Kinase A (phospho-acceptor) domain XAV_05700 PF13188 PAS domain XAV_05700 PF08448 PAS fold XAV_05710 PF04616 Glycosyl hydrolases family 43 XAV_05710 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XAV_05715 PF04616 Glycosyl hydrolases family 43 XAV_05715 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XAV_05735 PF00072 Response regulator receiver domain XAV_05740 PF06964 Alpha-L-arabinofuranosidase C-terminal domain XAV_05745 PF01263 Aldose 1-epimerase XAV_05750 PF01578 Cytochrome C assembly protein XAV_05755 PF02881 SRP54-type protein, helical bundle domain XAV_05755 PF00448 SRP54-type protein, GTPase domain XAV_05755 PF02978 Signal peptide binding domain XAV_05760 PF03060 Nitronate monooxygenase XAV_05765 PF01063 Amino-transferase class IV XAV_05770 PF00886 Ribosomal protein S16 XAV_05775 PF01782 RimM N-terminal domain XAV_05775 PF05239 PRC-barrel domain XAV_05780 PF01746 tRNA (Guanine-1)-methyltransferase XAV_05785 PF01245 Ribosomal protein L19 XAV_05790 PF01554 MatE XAV_05800 PF05598 Transposase domain (DUF772) XAV_05800 PF01609 Transposase DDE domain XAV_05820 PF01479 S4 domain XAV_05825 PF00141 Peroxidase XAV_05840 PF00488 MutS domain V XAV_05840 PF01624 MutS domain I XAV_05840 PF05188 MutS domain II XAV_05840 PF05190 MutS family domain IV XAV_05840 PF05192 MutS domain III XAV_05900 PF01609 Transposase DDE domain XAV_05900 PF05598 Transposase domain (DUF772) XAV_05905 PF02837 Glycosyl hydrolases family 2, sugar binding domain XAV_05905 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XAV_05905 PF00703 Glycosyl hydrolases family 2 XAV_05905 PF13287 Fn3 associated XAV_05905 PF16355 Domain of unknown function (DUF4982) XAV_05910 PF07745 Glycosyl hydrolase family 53 XAV_05920 PF01381 Helix-turn-helix XAV_05920 PF06114 IrrE N-terminal-like domain XAV_05920 PF09856 Predicted transcriptional regulator (DUF2083) XAV_05925 PF00171 Aldehyde dehydrogenase family XAV_05930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XAV_05930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XAV_05930 PF02770 Acyl-CoA dehydrogenase, middle domain XAV_05935 PF00378 Enoyl-CoA hydratase/isomerase XAV_05940 PF00378 Enoyl-CoA hydratase/isomerase XAV_05940 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XAV_05940 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XAV_05945 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XAV_05945 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XAV_05950 PF01545 Cation efflux family XAV_05955 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XAV_05955 PF00378 Enoyl-CoA hydratase/isomerase XAV_05955 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XAV_05960 PF04542 Sigma-70 region 2 XAV_05960 PF08281 Sigma-70, region 4 XAV_05970 PF13180 PDZ domain XAV_05975 PF06421 GTP-binding protein LepA C-terminus XAV_05975 PF00009 Elongation factor Tu GTP binding domain XAV_05975 PF03144 Elongation factor Tu domain 2 XAV_05975 PF00679 Elongation factor G C-terminus XAV_05980 PF10502 Signal peptidase, peptidase S26 XAV_05990 PF00035 Double-stranded RNA binding motif XAV_05990 PF14622 Ribonuclease-III-like XAV_05995 PF01926 50S ribosome-binding GTPase XAV_05995 PF07650 KH domain XAV_06000 PF02565 Recombination protein O C terminal XAV_06000 PF11967 Recombination protein O N terminal XAV_06010 PF05958 tRNA (Uracil-5-)-methyltransferase XAV_06015 PF01928 CYTH domain XAV_06020 PF01323 DSBA-like thioredoxin domain XAV_06025 PF01593 Flavin containing amine oxidoreductase XAV_06030 PF04244 Deoxyribodipyrimidine photo-lyase-related protein XAV_06035 PF00933 Glycosyl hydrolase family 3 N terminal domain XAV_06045 PF01048 Phosphorylase superfamily XAV_06050 PF00313 'Cold-shock' DNA-binding domain XAV_06065 PF00271 Helicase conserved C-terminal domain XAV_06065 PF08494 DEAD/H associated XAV_06065 PF00270 DEAD/DEAH box helicase XAV_06070 PF01068 ATP dependent DNA ligase domain XAV_06070 PF04679 ATP dependent DNA ligase C terminal region XAV_06070 PF04675 DNA ligase N terminus XAV_06080 PF01068 ATP dependent DNA ligase domain XAV_06080 PF04679 ATP dependent DNA ligase C terminal region XAV_06080 PF04675 DNA ligase N terminus XAV_06095 PF00990 Diguanylate cyclase, GGDEF domain XAV_06095 PF00072 Response regulator receiver domain XAV_06110 PF02803 Thiolase, C-terminal domain XAV_06110 PF00108 Thiolase, N-terminal domain XAV_06120 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XAV_06120 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain XAV_06130 PF01863 Protein of unknown function DUF45 XAV_06135 PF07043 Protein of unknown function (DUF1328) XAV_06145 PF01258 Prokaryotic dksA/traR C4-type zinc finger XAV_06165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XAV_06175 PF03831 PhnA domain XAV_06175 PF08274 PhnA Zinc-Ribbon XAV_06190 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XAV_06195 PF07690 Major Facilitator Superfamily XAV_06230 PF09924 Uncharacterised conserved protein (DUF2156) XAV_06230 PF03706 Lysylphosphatidylglycerol synthase TM region XAV_06240 PF01042 Endoribonuclease L-PSP XAV_06285 PF04545 Sigma-70, region 4 XAV_06285 PF04542 Sigma-70 region 2 XAV_06300 PF04060 Putative Fe-S cluster XAV_06310 PF09334 tRNA synthetases class I (M) XAV_06310 PF01588 Putative tRNA binding domain XAV_06330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XAV_06335 PF00324 Amino acid permease XAV_06340 PF02574 Homocysteine S-methyltransferase XAV_06350 PF02592 Putative vitamin uptake transporter XAV_06420 PF06508 Queuosine biosynthesis protein QueC XAV_06455 PF00849 RNA pseudouridylate synthase XAV_06455 PF01479 S4 domain XAV_06475 PF00270 DEAD/DEAH box helicase XAV_06475 PF16124 RecQ zinc-binding XAV_06475 PF00570 HRDC domain XAV_06475 PF09382 RQC domain XAV_06475 PF00271 Helicase conserved C-terminal domain XAV_06490 PF00210 Ferritin-like domain XAV_06495 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold XAV_06495 PF00271 Helicase conserved C-terminal domain XAV_06495 PF04408 Helicase associated domain (HA2) XAV_06495 PF11898 Domain of unknown function (DUF3418) XAV_06495 PF00270 DEAD/DEAH box helicase XAV_06520 PF13186 Iron-sulfur cluster-binding domain XAV_06520 PF04055 Radical SAM superfamily XAV_06525 PF05402 Coenzyme PQQ synthesis protein D (PqqD) XAV_06530 PF03070 TENA/THI-4/PQQC family XAV_06535 PF12706 Beta-lactamase superfamily domain XAV_06540 PF08042 PqqA family XAV_06545 PF13291 ACT domain XAV_06545 PF04607 Region found in RelA / SpoT proteins XAV_06545 PF02824 TGS domain XAV_06555 PF00535 Glycosyl transferase family 2 XAV_06560 PF14814 Bifunctional transglycosylase second domain XAV_06560 PF00912 Transglycosylase XAV_06560 PF00905 Penicillin binding protein transpeptidase domain XAV_06580 PF04851 Type III restriction enzyme, res subunit XAV_06580 PF13307 Helicase C-terminal domain XAV_06585 PF00814 Glycoprotease family XAV_06600 PF02951 Prokaryotic glutathione synthetase, N-terminal domain XAV_06600 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain XAV_06605 PF00072 Response regulator receiver domain XAV_06610 PF00072 Response regulator receiver domain XAV_06615 PF01584 CheW-like domain XAV_06620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XAV_06620 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term XAV_06625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_06625 PF02895 Signal transducing histidine kinase, homodimeric domain XAV_06625 PF01627 Hpt domain XAV_06625 PF01584 CheW-like domain XAV_06625 PF00072 Response regulator receiver domain XAV_06640 PF13302 Acetyltransferase (GNAT) domain XAV_06650 PF01112 Asparaginase XAV_06655 PF03932 CutC family XAV_06690 PF01301 Glycosyl hydrolases family 35 XAV_06695 PF17678 Glycosyl hydrolase family 92 N-terminal domain XAV_06695 PF07971 Glycosyl hydrolase family 92 XAV_06750 PF00664 ABC transporter transmembrane region XAV_06750 PF03412 Peptidase C39 family XAV_06750 PF00005 ABC transporter XAV_06755 PF14310 Fibronectin type III-like domain XAV_06755 PF00933 Glycosyl hydrolase family 3 N terminal domain XAV_06755 PF01915 Glycosyl hydrolase family 3 C-terminal domain XAV_06755 PF07691 PA14 domain XAV_06765 PF00728 Glycosyl hydrolase family 20, catalytic domain XAV_06765 PF07691 PA14 domain XAV_06765 PF02838 Glycosyl hydrolase family 20, domain 2 XAV_06770 PF01476 LysM domain XAV_06770 PF00704 Glycosyl hydrolases family 18 XAV_06785 PF02685 Glucokinase XAV_06800 PF04452 RNA methyltransferase XAV_06805 PF00202 Aminotransferase class-III XAV_06810 PF00293 NUDIX domain XAV_06815 PF00459 Inositol monophosphatase family XAV_06820 PF03819 MazG nucleotide pyrophosphohydrolase domain XAV_06825 PF02694 Uncharacterised BCR, YnfA/UPF0060 family XAV_06840 PF08669 Glycine cleavage T-protein C-terminal barrel domain XAV_06840 PF01571 Aminomethyltransferase folate-binding domain XAV_06845 PF01597 Glycine cleavage H-protein XAV_06875 PF09317 Domain of unknown function (DUF1974) XAV_06875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XAV_06875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XAV_06880 PF00561 alpha/beta hydrolase fold XAV_06885 PF00440 Bacterial regulatory proteins, tetR family XAV_06890 PF00593 TonB dependent receptor XAV_06890 PF07715 TonB-dependent Receptor Plug Domain XAV_06900 PF01430 Hsp33 protein XAV_06905 PF00912 Transglycosylase XAV_06910 PF00535 Glycosyl transferase family 2 XAV_06925 PF03006 Haemolysin-III related XAV_06930 PF16658 Class II release factor RF3, C-terminal domain XAV_06930 PF00009 Elongation factor Tu GTP binding domain XAV_06935 PF01551 Peptidase family M23 XAV_06935 PF08525 Opacity-associated protein A N-terminal motif XAV_06935 PF01476 LysM domain XAV_06940 PF00561 alpha/beta hydrolase fold XAV_06945 PF01053 Cys/Met metabolism PLP-dependent enzyme XAV_06950 PF00742 Homoserine dehydrogenase XAV_06950 PF00696 Amino acid kinase family XAV_06950 PF03447 Homoserine dehydrogenase, NAD binding domain XAV_06955 PF12697 Alpha/beta hydrolase family XAV_06960 PF03315 Serine dehydratase beta chain XAV_06960 PF03313 Serine dehydratase alpha chain XAV_06980 PF04264 YceI-like domain XAV_06985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_06985 PF00512 His Kinase A (phospho-acceptor) domain XAV_06985 PF00072 Response regulator receiver domain XAV_06985 PF01627 Hpt domain XAV_06995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_06995 PF00512 His Kinase A (phospho-acceptor) domain XAV_06995 PF01627 Hpt domain XAV_06995 PF00072 Response regulator receiver domain XAV_06995 PF17149 Periplasmic sensor domain found in signal transduction proteins XAV_06995 PF00672 HAMP domain XAV_07000 PF17149 Periplasmic sensor domain found in signal transduction proteins XAV_07000 PF00072 Response regulator receiver domain XAV_07000 PF00672 HAMP domain XAV_07000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_07000 PF00512 His Kinase A (phospho-acceptor) domain XAV_07000 PF01627 Hpt domain XAV_07010 PF01208 Uroporphyrinogen decarboxylase (URO-D) XAV_07020 PF01761 3-dehydroquinate synthase XAV_07025 PF01202 Shikimate kinase XAV_07030 PF01243 Pyridoxamine 5'-phosphate oxidase XAV_07030 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region XAV_07040 PF04012 PspA/IM30 family XAV_07065 PF03738 Glutathionylspermidine synthase preATP-grasp XAV_07110 PF02534 Type IV secretory system Conjugative DNA transfer XAV_07115 PF00376 MerR family regulatory protein XAV_07115 PF09278 MerR, DNA binding XAV_07140 PF04820 Tryptophan halogenase XAV_07145 PF12706 Beta-lactamase superfamily domain XAV_07160 PF00324 Amino acid permease XAV_07165 PF00196 Bacterial regulatory proteins, luxR family XAV_07170 PF00561 alpha/beta hydrolase fold XAV_07175 PF00544 Pectate lyase XAV_07180 PF00324 Amino acid permease XAV_07195 PF01654 Cytochrome bd terminal oxidase subunit I XAV_07200 PF02322 Cytochrome bd terminal oxidase subunit II XAV_07205 PF00756 Putative esterase XAV_07210 PF03448 MgtE intracellular N domain XAV_07210 PF01769 Divalent cation transporter XAV_07210 PF00571 CBS domain XAV_07215 PF02896 PEP-utilising enzyme, TIM barrel domain XAV_07215 PF00391 PEP-utilising enzyme, mobile domain XAV_07215 PF05524 PEP-utilising enzyme, N-terminal XAV_07220 PF00381 PTS HPr component phosphorylation site XAV_07315 PF00999 Sodium/hydrogen exchanger family XAV_07315 PF02254 TrkA-N domain XAV_07325 PF07715 TonB-dependent Receptor Plug Domain XAV_07325 PF00593 TonB dependent receptor XAV_07330 PF00593 TonB dependent receptor XAV_07330 PF07715 TonB-dependent Receptor Plug Domain XAV_07340 PF00593 TonB dependent receptor XAV_07340 PF07715 TonB-dependent Receptor Plug Domain XAV_07345 PF12848 ABC transporter XAV_07345 PF00005 ABC transporter XAV_07355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XAV_07355 PF03466 LysR substrate binding domain XAV_07375 PF05506 Domain of unknown function (DUF756) XAV_07375 PF04185 Phosphoesterase family XAV_07385 PF07690 Major Facilitator Superfamily XAV_07400 PF02938 GAD domain XAV_07400 PF00152 tRNA synthetases class II (D, K and N) XAV_07400 PF01336 OB-fold nucleic acid binding domain XAV_07415 PF01709 Transcriptional regulator XAV_07420 PF02075 Crossover junction endodeoxyribonuclease RuvC XAV_07425 PF01330 RuvA N terminal domain XAV_07425 PF07499 RuvA, C-terminal domain XAV_07430 PF02705 K+ potassium transporter XAV_07440 PF17864 RuvB AAA lid domain XAV_07440 PF05491 RuvB C-terminal winged helix domain XAV_07440 PF05496 Holliday junction DNA helicase RuvB P-loop domain XAV_07445 PF03061 Thioesterase superfamily XAV_07450 PF01618 MotA/TolQ/ExbB proton channel family XAV_07455 PF02472 Biopolymer transport protein ExbD/TolR XAV_07465 PF04052 TolB amino-terminal domain XAV_07465 PF07676 WD40-like Beta Propeller Repeat XAV_07470 PF00691 OmpA family XAV_07480 PF04055 Radical SAM superfamily XAV_07485 PF05598 Transposase domain (DUF772) XAV_07500 PF03377 TAL effector repeat XAV_07520 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit XAV_07525 PF14579 Helix-hairpin-helix motif XAV_07525 PF01336 OB-fold nucleic acid binding domain XAV_07525 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XAV_07525 PF07733 Bacterial DNA polymerase III alpha NTPase domain XAV_07525 PF02811 PHP domain XAV_07530 PF01351 Ribonuclease HII XAV_07535 PF02684 Lipid-A-disaccharide synthetase XAV_07540 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 XAV_07540 PF00132 Bacterial transferase hexapeptide (six repeats) XAV_07545 PF07977 FabA-like domain XAV_07550 PF00132 Bacterial transferase hexapeptide (six repeats) XAV_07550 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD XAV_07560 PF07244 Surface antigen variable number repeat XAV_07560 PF01103 Surface antigen XAV_07565 PF02163 Peptidase family M50 XAV_07565 PF17820 PDZ domain XAV_07570 PF13288 DXP reductoisomerase C-terminal domain XAV_07570 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain XAV_07570 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase XAV_07580 PF01255 Putative undecaprenyl diphosphate synthase XAV_07585 PF01765 Ribosome recycling factor XAV_07590 PF00696 Amino acid kinase family XAV_07600 PF00889 Elongation factor TS XAV_07605 PF00318 Ribosomal protein S2 XAV_07640 PF00557 Metallopeptidase family M24 XAV_07645 PF08335 GlnD PII-uridylyltransferase XAV_07645 PF01966 HD domain XAV_07645 PF01909 Nucleotidyltransferase domain XAV_07650 PF14602 Hexapeptide repeat of succinyl-transferase XAV_07650 PF00132 Bacterial transferase hexapeptide (six repeats) XAV_07650 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal XAV_07655 PF03960 ArsC family XAV_07665 PF07687 Peptidase dimerisation domain XAV_07665 PF01546 Peptidase family M20/M25/M40 XAV_07670 PF00733 Asparagine synthase XAV_07670 PF13537 Glutamine amidotransferase domain XAV_07680 PF00593 TonB dependent receptor XAV_07680 PF07715 TonB-dependent Receptor Plug Domain XAV_07685 PF01804 Penicillin amidase XAV_07690 PF00210 Ferritin-like domain XAV_07700 PF03989 DNA gyrase C-terminal domain, beta-propeller XAV_07700 PF00521 DNA gyrase/topoisomerase IV, subunit A XAV_07715 PF02321 Outer membrane efflux protein XAV_07720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XAV_07720 PF00529 HlyD membrane-fusion protein of T1SS XAV_07725 PF07690 Major Facilitator Superfamily XAV_07790 PF12802 MarR family XAV_07800 PF00255 Glutathione peroxidase XAV_07805 PF00970 Oxidoreductase FAD-binding domain XAV_07805 PF00175 Oxidoreductase NAD-binding domain XAV_07810 PF00005 ABC transporter XAV_07815 PF05681 Fumarate hydratase (Fumerase) XAV_07815 PF05683 Fumarase C-terminus XAV_07830 PF02253 Phospholipase A1 XAV_07840 PF00313 'Cold-shock' DNA-binding domain XAV_07855 PF00899 ThiF family XAV_07860 PF01026 TatD related DNase XAV_07885 PF02798 Glutathione S-transferase, N-terminal domain XAV_07885 PF00043 Glutathione S-transferase, C-terminal domain XAV_07890 PF13537 Glutamine amidotransferase domain XAV_07890 PF00733 Asparagine synthase XAV_07895 PF03358 NADPH-dependent FMN reductase XAV_07900 PF03796 DnaB-like helicase C terminal domain XAV_07900 PF00772 DnaB-like helicase N terminal domain XAV_07905 PF00875 DNA photolyase XAV_07905 PF03441 FAD binding domain of DNA photolyase XAV_07910 PF00691 OmpA family XAV_07910 PF05736 OprF membrane domain XAV_07935 PF00990 Diguanylate cyclase, GGDEF domain XAV_07935 PF08448 PAS fold XAV_07945 PF00990 Diguanylate cyclase, GGDEF domain XAV_07960 PF13340 Putative transposase of IS4/5 family (DUF4096) XAV_07980 PF00202 Aminotransferase class-III XAV_08030 PF13276 HTH-like domain XAV_08030 PF13683 Integrase core domain XAV_08070 PF00589 Phage integrase family XAV_08070 PF13356 Arm DNA-binding domain XAV_08080 PF00082 Subtilase family XAV_08085 PF01668 SmpB protein XAV_08095 PF03658 RnfH family Ubiquitin XAV_08100 PF04355 SmpA / OmlA family XAV_08105 PF01475 Ferric uptake regulator family XAV_08110 PF02463 RecF/RecN/SMC N terminal domain XAV_08115 PF01628 HrcA protein C terminal domain XAV_08115 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding XAV_08120 PF01025 GrpE XAV_08125 PF00012 Hsp70 protein XAV_08130 PF00226 DnaJ domain XAV_08130 PF01556 DnaJ C terminal domain XAV_08130 PF00684 DnaJ central domain XAV_08135 PF08543 Phosphomethylpyrimidine kinase XAV_08160 PF03412 Peptidase C39 family XAV_08160 PF00005 ABC transporter XAV_08160 PF00664 ABC transporter transmembrane region XAV_08170 PF00005 ABC transporter XAV_08170 PF00664 ABC transporter transmembrane region XAV_08175 PF01205 Uncharacterized protein family UPF0029 XAV_08180 PF03641 Possible lysine decarboxylase XAV_08185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XAV_08185 PF07992 Pyridine nucleotide-disulphide oxidoreductase XAV_08190 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XAV_08190 PF00364 Biotin-requiring enzyme XAV_08190 PF02817 e3 binding domain XAV_08195 PF16870 2-oxoglutarate dehydrogenase C-terminal XAV_08195 PF00676 Dehydrogenase E1 component XAV_08195 PF02779 Transketolase, pyrimidine binding domain XAV_08195 PF16078 2-oxoglutarate dehydrogenase N-terminus XAV_08205 PF08007 Cupin superfamily protein XAV_08220 PF08328 Adenylosuccinate lyase C-terminal XAV_08220 PF00206 Lyase XAV_08230 PF00571 CBS domain XAV_08230 PF01595 Cyclin M transmembrane N-terminal domain XAV_08230 PF03471 Transporter associated domain XAV_08235 PF10415 Fumarase C C-terminus XAV_08235 PF00206 Lyase XAV_08260 PF00005 ABC transporter XAV_08265 PF00392 Bacterial regulatory proteins, gntR family XAV_08275 PF00255 Glutathione peroxidase XAV_08280 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XAV_08280 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XAV_08285 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XAV_08285 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XAV_08285 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XAV_08290 PF04102 SlyX XAV_08310 PF07690 Major Facilitator Superfamily XAV_08315 PF00294 pfkB family carbohydrate kinase XAV_08330 PF00809 Pterin binding enzyme XAV_08330 PF02574 Homocysteine S-methyltransferase XAV_08335 PF01209 ubiE/COQ5 methyltransferase family XAV_08340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XAV_08340 PF02770 Acyl-CoA dehydrogenase, middle domain XAV_08340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XAV_08355 PF00773 RNB domain XAV_08355 PF08206 Ribonuclease B OB domain XAV_08355 PF08461 Ribonuclease R winged-helix domain XAV_08355 PF00575 S1 RNA binding domain XAV_08355 PF17876 Cold shock domain XAV_08375 PF00588 SpoU rRNA Methylase family XAV_08375 PF08032 RNA 2'-O ribose methyltransferase substrate binding XAV_08385 PF00929 Exonuclease XAV_08395 PF01895 PhoU domain XAV_08400 PF00005 ABC transporter XAV_08405 PF00528 Binding-protein-dependent transport system inner membrane component XAV_08410 PF00528 Binding-protein-dependent transport system inner membrane component XAV_08415 PF12849 PBP superfamily domain XAV_08420 PF12849 PBP superfamily domain XAV_08435 PF00484 Carbonic anhydrase XAV_08440 PF01740 STAS domain XAV_08440 PF00916 Sulfate permease family XAV_08445 PF00730 HhH-GPD superfamily base excision DNA repair protein XAV_08445 PF10576 Iron-sulfur binding domain of endonuclease III XAV_08445 PF00633 Helix-hairpin-helix motif XAV_08455 PF00378 Enoyl-CoA hydratase/isomerase XAV_08460 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XAV_08460 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XAV_08465 PF00293 NUDIX domain XAV_08470 PF00581 Rhodanese-like domain XAV_08510 PF01170 Putative RNA methylase family UPF0020 XAV_08510 PF10672 S-adenosylmethionine-dependent methyltransferase XAV_08510 PF02926 THUMP domain XAV_08515 PF01513 ATP-NAD kinase XAV_08535 PF00248 Aldo/keto reductase family XAV_08545 PF08411 Exonuclease C-terminal XAV_08545 PF00929 Exonuclease XAV_08550 PF01494 FAD binding domain XAV_08555 PF00266 Aminotransferase class-V XAV_08565 PF06052 3-hydroxyanthranilic acid dioxygenase XAV_08570 PF00484 Carbonic anhydrase XAV_08655 PF00152 tRNA synthetases class II (D, K and N) XAV_08655 PF01336 OB-fold nucleic acid binding domain XAV_08660 PF01521 Iron-sulphur cluster biosynthesis XAV_08665 PF01250 Ribosomal protein S6 XAV_08670 PF01084 Ribosomal protein S18 XAV_08675 PF01281 Ribosomal protein L9, N-terminal domain XAV_08675 PF03948 Ribosomal protein L9, C-terminal domain XAV_08680 PF02463 RecF/RecN/SMC N terminal domain XAV_08685 PF04354 ZipA, C-terminal FtsZ-binding domain XAV_08695 PF00155 Aminotransferase class I and II XAV_08700 PF00533 BRCA1 C Terminus (BRCT) domain XAV_08700 PF03119 NAD-dependent DNA ligase C4 zinc finger domain XAV_08700 PF03120 NAD-dependent DNA ligase OB-fold domain XAV_08700 PF12826 Helix-hairpin-helix motif XAV_08700 PF01653 NAD-dependent DNA ligase adenylation domain XAV_08705 PF00152 tRNA synthetases class II (D, K and N) XAV_08720 PF01008 Initiation factor 2 subunit family XAV_08725 PF00521 DNA gyrase/topoisomerase IV, subunit A XAV_08725 PF03989 DNA gyrase C-terminal domain, beta-propeller XAV_08770 PF01609 Transposase DDE domain XAV_08770 PF05598 Transposase domain (DUF772) XAV_08785 PF13406 Transglycosylase SLT domain XAV_08800 PF17391 Urocanase N-terminal domain XAV_08800 PF17392 Urocanase C-terminal domain XAV_08800 PF01175 Urocanase Rossmann-like domain XAV_08810 PF00221 Aromatic amino acid lyase XAV_08815 PF07969 Amidohydrolase family XAV_08830 PF07702 UTRA domain XAV_08830 PF00392 Bacterial regulatory proteins, gntR family XAV_08855 PF01794 Ferric reductase like transmembrane component XAV_08860 PF00174 Oxidoreductase molybdopterin binding domain XAV_08865 PF00266 Aminotransferase class-V XAV_08870 PF00800 Prephenate dehydratase XAV_08870 PF01842 ACT domain XAV_08870 PF01817 Chorismate mutase type II XAV_08875 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XAV_08880 PF03544 Gram-negative bacterial TonB protein C-terminal XAV_08885 PF03544 Gram-negative bacterial TonB protein C-terminal XAV_08890 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XAV_08890 PF02403 Seryl-tRNA synthetase N-terminal domain XAV_08900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XAV_08900 PF03466 LysR substrate binding domain XAV_08915 PF02203 Tar ligand binding domain homologue XAV_08915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XAV_08915 PF00672 HAMP domain XAV_08935 PF00672 HAMP domain XAV_08935 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XAV_08935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_08935 PF00512 His Kinase A (phospho-acceptor) domain XAV_08935 PF00072 Response regulator receiver domain XAV_08935 PF01627 Hpt domain XAV_08940 PF06745 KaiC XAV_08945 PF13426 PAS domain XAV_08945 PF00072 Response regulator receiver domain XAV_08945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_08955 PF03918 Cytochrome C biogenesis protein XAV_08960 PF08534 Redoxin XAV_08965 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XAV_08965 PF01578 Cytochrome C assembly protein XAV_08970 PF03100 CcmE XAV_08975 PF04995 Heme exporter protein D (CcmD) XAV_08980 PF01578 Cytochrome C assembly protein XAV_08985 PF00082 Subtilase family XAV_08995 PF04542 Sigma-70 region 2 XAV_08995 PF08281 Sigma-70, region 4 XAV_09005 PF00034 Cytochrome c XAV_09020 PF05523 WxcM-like, C-terminal XAV_09040 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XAV_09045 PF01943 Polysaccharide biosynthesis protein XAV_09050 PF00535 Glycosyl transferase family 2 XAV_09065 PF08241 Methyltransferase domain XAV_09070 PF13382 Adenine deaminase C-terminal domain XAV_09070 PF01979 Amidohydrolase family XAV_09075 PF01209 ubiE/COQ5 methyltransferase family XAV_09085 PF00534 Glycosyl transferases group 1 XAV_09085 PF13579 Glycosyl transferase 4-like domain XAV_09100 PF00005 ABC transporter XAV_09105 PF00664 ABC transporter transmembrane region XAV_09105 PF00005 ABC transporter XAV_09110 PF07690 Major Facilitator Superfamily XAV_09115 PF00296 Luciferase-like monooxygenase XAV_09130 PF01595 Cyclin M transmembrane N-terminal domain XAV_09130 PF00571 CBS domain XAV_09130 PF03471 Transporter associated domain XAV_09155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_09155 PF01751 Toprim domain XAV_09155 PF00986 DNA gyrase B subunit, carboxyl terminus XAV_09155 PF00204 DNA gyrase B XAV_09165 PF06418 CTP synthase N-terminus XAV_09165 PF00117 Glutamine amidotransferase class-I XAV_09170 PF00793 DAHP synthetase I family XAV_09180 PF03952 Enolase, N-terminal domain XAV_09180 PF00113 Enolase, C-terminal TIM barrel domain XAV_09185 PF04977 Septum formation initiator XAV_09190 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase XAV_09200 PF02542 YgbB family XAV_09205 PF01142 tRNA pseudouridine synthase D (TruD) XAV_09210 PF01713 Smr domain XAV_09215 PF01975 Survival protein SurE XAV_09225 PF09335 SNARE associated Golgi protein XAV_09230 PF01476 LysM domain XAV_09230 PF01551 Peptidase family M23 XAV_09235 PF04430 Protein of unknown function (DUF498/DUF598) XAV_09240 PF01985 CRS1 / YhbY (CRM) domain XAV_09245 PF01728 FtsJ-like methyltransferase XAV_09250 PF17862 AAA+ lid domain XAV_09250 PF00004 ATPase family associated with various cellular activities (AAA) XAV_09250 PF06480 FtsH Extracellular XAV_09250 PF01434 Peptidase family M41 XAV_09255 PF00809 Pterin binding enzyme XAV_09265 PF17209 Hfq protein XAV_09270 PF01926 50S ribosome-binding GTPase XAV_09270 PF16360 GTP-binding GTPase Middle Region XAV_09270 PF13167 GTP-binding GTPase N-terminal XAV_09275 PF02464 Competence-damaged protein XAV_09280 PF03109 ABC1 family XAV_09285 PF01726 LexA DNA binding domain XAV_09285 PF00717 Peptidase S24-like XAV_09290 PF00154 recA bacterial DNA recombination protein XAV_09295 PF02631 RecX family XAV_09300 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XAV_09300 PF01411 tRNA synthetases class II (A) XAV_09300 PF02272 DHHA1 domain XAV_09305 PF02599 Global regulator protein family XAV_09330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_09330 PF00072 Response regulator receiver domain XAV_09330 PF13426 PAS domain XAV_09335 PF04362 Bacterial Fe(2+) trafficking XAV_09340 PF00730 HhH-GPD superfamily base excision DNA repair protein XAV_09340 PF00633 Helix-hairpin-helix motif XAV_09340 PF10576 Iron-sulfur binding domain of endonuclease III XAV_09340 PF14815 NUDIX domain XAV_09345 PF00448 SRP54-type protein, GTPase domain XAV_09345 PF02881 SRP54-type protein, helical bundle domain XAV_09355 PF05544 Proline racemase XAV_09360 PF01266 FAD dependent oxidoreductase XAV_09370 PF07992 Pyridine nucleotide-disulphide oxidoreductase XAV_09370 PF04324 BFD-like [2Fe-2S] binding domain XAV_09375 PF00701 Dihydrodipicolinate synthetase family XAV_09380 PF00171 Aldehyde dehydrogenase family XAV_09385 PF01321 Creatinase/Prolidase N-terminal domain XAV_09385 PF00557 Metallopeptidase family M24 XAV_09400 PF13520 Amino acid permease XAV_09440 PF00593 TonB dependent receptor XAV_09440 PF07715 TonB-dependent Receptor Plug Domain XAV_09445 PF07532 Bacterial Ig-like domain (group 4) XAV_09450 PF04616 Glycosyl hydrolases family 43 XAV_09455 PF00326 Prolyl oligopeptidase family XAV_09455 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XAV_09480 PF03377 TAL effector repeat XAV_09500 PF05598 Transposase domain (DUF772) XAV_09500 PF01609 Transposase DDE domain XAV_09510 PF12626 Polymerase A arginine-rich C-terminus XAV_09510 PF12627 Probable RNA and SrmB- binding site of polymerase A XAV_09510 PF01743 Poly A polymerase head domain XAV_09515 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XAV_09520 PF02548 Ketopantoate hydroxymethyltransferase XAV_09525 PF02569 Pantoate-beta-alanine ligase XAV_09530 PF02261 Aspartate decarboxylase XAV_09535 PF00342 Phosphoglucose isomerase XAV_09555 PF01915 Glycosyl hydrolase family 3 C-terminal domain XAV_09555 PF00933 Glycosyl hydrolase family 3 N terminal domain XAV_09555 PF14310 Fibronectin type III-like domain XAV_09565 PF00474 Sodium:solute symporter family XAV_09570 PF01590 GAF domain XAV_09570 PF00360 Phytochrome region XAV_09570 PF00990 Diguanylate cyclase, GGDEF domain XAV_09570 PF00563 EAL domain XAV_09575 PF00150 Cellulase (glycosyl hydrolase family 5) XAV_09575 PF02013 Cellulose or protein binding domain XAV_09580 PF00072 Response regulator receiver domain XAV_09590 PF04551 GcpE protein XAV_09595 PF01569 PAP2 superfamily XAV_09600 PF07690 Major Facilitator Superfamily XAV_09610 PF00892 EamA-like transporter family XAV_09615 PF01565 FAD binding domain XAV_09615 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain XAV_09620 PF01180 Dihydroorotate dehydrogenase XAV_09635 PF00171 Aldehyde dehydrogenase family XAV_09680 PF03743 Bacterial conjugation TrbI-like protein XAV_09685 PF00437 Type II/IV secretion system protein XAV_09690 PF01464 Transglycosylase SLT domain XAV_09700 PF05101 Type IV secretory pathway, VirB3-like protein XAV_09705 PF03135 CagE, TrbE, VirB family, component of type IV transporter system XAV_09740 PF05598 Transposase domain (DUF772) XAV_09740 PF01609 Transposase DDE domain XAV_09745 PF00072 Response regulator receiver domain XAV_09750 PF00512 His Kinase A (phospho-acceptor) domain XAV_09750 PF01627 Hpt domain XAV_09750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_09750 PF00672 HAMP domain XAV_09750 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XAV_09750 PF00072 Response regulator receiver domain XAV_09755 PF04286 Protein of unknown function (DUF445) XAV_09765 PF00202 Aminotransferase class-III XAV_09770 PF07690 Major Facilitator Superfamily XAV_09775 PF02634 FdhD/NarQ family XAV_09780 PF00384 Molybdopterin oxidoreductase XAV_09795 PF01814 Hemerythrin HHE cation binding domain XAV_09800 PF00990 Diguanylate cyclase, GGDEF domain XAV_09800 PF00072 Response regulator receiver domain XAV_09805 PF01266 FAD dependent oxidoreductase XAV_09810 PF00120 Glutamine synthetase, catalytic domain XAV_09815 PF07722 Peptidase C26 XAV_09820 PF00120 Glutamine synthetase, catalytic domain XAV_09835 PF00202 Aminotransferase class-III XAV_09840 PF13416 Bacterial extracellular solute-binding protein XAV_09845 PF13533 Biotin-lipoyl like XAV_09850 PF07690 Major Facilitator Superfamily XAV_09855 PF02321 Outer membrane efflux protein XAV_09860 PF00005 ABC transporter XAV_09860 PF08402 TOBE domain XAV_09865 PF00528 Binding-protein-dependent transport system inner membrane component XAV_09870 PF00528 Binding-protein-dependent transport system inner membrane component XAV_09875 PF00171 Aldehyde dehydrogenase family XAV_09890 PF03471 Transporter associated domain XAV_09890 PF00571 CBS domain XAV_09900 PF02130 Uncharacterized protein family UPF0054 XAV_09910 PF02562 PhoH-like protein XAV_09915 PF01938 TRAM domain XAV_09915 PF00919 Uncharacterized protein family UPF0004 XAV_09915 PF04055 Radical SAM superfamily XAV_09930 PF01464 Transglycosylase SLT domain XAV_09935 PF00355 Rieske [2Fe-2S] domain XAV_09935 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal XAV_09940 PF00032 Cytochrome b(C-terminal)/b6/petD XAV_09940 PF00033 Cytochrome b/b6/petB XAV_09945 PF02167 Cytochrome C1 family XAV_09950 PF02798 Glutathione S-transferase, N-terminal domain XAV_09950 PF00043 Glutathione S-transferase, C-terminal domain XAV_09955 PF04386 Stringent starvation protein B XAV_09980 PF02245 Methylpurine-DNA glycosylase (MPG) XAV_09990 PF01584 CheW-like domain XAV_10010 PF05598 Transposase domain (DUF772) XAV_10010 PF01609 Transposase DDE domain XAV_10025 PF00589 Phage integrase family XAV_10030 PF05598 Transposase domain (DUF772) XAV_10030 PF01609 Transposase DDE domain XAV_10040 PF05598 Transposase domain (DUF772) XAV_10195 PF00072 Response regulator receiver domain XAV_10195 PF04397 LytTr DNA-binding domain XAV_10210 PF00082 Subtilase family XAV_10210 PF03797 Autotransporter beta-domain XAV_10215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XAV_10215 PF00529 HlyD membrane-fusion protein of T1SS XAV_10220 PF00873 AcrB/AcrD/AcrF family XAV_10230 PF00512 His Kinase A (phospho-acceptor) domain XAV_10230 PF08448 PAS fold XAV_10230 PF13426 PAS domain XAV_10230 PF00072 Response regulator receiver domain XAV_10230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_10235 PF00196 Bacterial regulatory proteins, luxR family XAV_10235 PF00072 Response regulator receiver domain XAV_10265 PF01106 NifU-like domain XAV_10270 PF01329 Pterin 4 alpha carbinolamine dehydratase XAV_10285 PF11737 Protein of unknown function (DUF3300) XAV_10290 PF01479 S4 domain XAV_10290 PF00849 RNA pseudouridylate synthase XAV_10295 PF00575 S1 RNA binding domain XAV_10295 PF12111 Polyribonucleotide phosphorylase C terminal XAV_10295 PF10150 Ribonuclease E/G family XAV_10300 PF00196 Bacterial regulatory proteins, luxR family XAV_10300 PF00072 Response regulator receiver domain XAV_10315 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XAV_10325 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XAV_10325 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XAV_10325 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XAV_10350 PF00072 Response regulator receiver domain XAV_10350 PF00486 Transcriptional regulatory protein, C terminal XAV_10355 PF00034 Cytochrome c XAV_10355 PF03150 Di-haem cytochrome c peroxidase XAV_10360 PF00512 His Kinase A (phospho-acceptor) domain XAV_10360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_10365 PF03466 LysR substrate binding domain XAV_10365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XAV_10385 PF00069 Protein kinase domain XAV_10425 PF04717 Type VI secretion system, phage-baseplate injector XAV_10440 PF10431 C-terminal, D2-small domain, of ClpB protein XAV_10440 PF17871 AAA lid domain XAV_10440 PF07724 AAA domain (Cdc48 subfamily) XAV_10440 PF00004 ATPase family associated with various cellular activities (AAA) XAV_10465 PF05638 Type VI secretion system effector, Hcp XAV_10550 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin XAV_10560 PF03377 TAL effector repeat XAV_10570 PF04002 RadC-like JAB domain XAV_10610 PF01066 CDP-alcohol phosphatidyltransferase XAV_10615 PF02151 UvrB/uvrC motif XAV_10615 PF01541 GIY-YIG catalytic domain XAV_10615 PF08459 UvrC Helix-hairpin-helix N-terminal XAV_10625 PF01451 Low molecular weight phosphotyrosine protein phosphatase XAV_10630 PF02348 Cytidylyltransferase XAV_10635 PF02606 Tetraacyldisaccharide-1-P 4'-kinase XAV_10640 PF00664 ABC transporter transmembrane region XAV_10640 PF00005 ABC transporter XAV_10650 PF01618 MotA/TolQ/ExbB proton channel family XAV_10655 PF03772 Competence protein XAV_10655 PF00753 Metallo-beta-lactamase superfamily XAV_10665 PF00005 ABC transporter XAV_10670 PF02687 FtsX-like permease family XAV_10670 PF12704 MacB-like periplasmic core domain XAV_10680 PF03937 Flavinator of succinate dehydrogenase XAV_10685 PF13085 2Fe-2S iron-sulfur cluster binding domain XAV_10695 PF00890 FAD binding domain XAV_10695 PF02910 Fumarate reductase flavoprotein C-term XAV_10700 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XAV_10705 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XAV_10715 PF01571 Aminomethyltransferase folate-binding domain XAV_10720 PF00005 ABC transporter XAV_10720 PF17912 MalK OB fold domain XAV_10725 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XAV_10725 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XAV_10730 PF02685 Glucokinase XAV_10735 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase XAV_10740 PF00920 Dehydratase family XAV_10745 PF01081 KDPG and KHG aldolase XAV_10775 PF00034 Cytochrome c XAV_10795 PF01797 Transposase IS200 like XAV_10825 PF17149 Periplasmic sensor domain found in signal transduction proteins XAV_10825 PF00672 HAMP domain XAV_10825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_10825 PF00072 Response regulator receiver domain XAV_10825 PF01627 Hpt domain XAV_10825 PF00512 His Kinase A (phospho-acceptor) domain XAV_10835 PF00575 S1 RNA binding domain XAV_10835 PF16921 Tex protein YqgF-like domain XAV_10835 PF09371 Tex-like protein N-terminal domain XAV_10835 PF17674 HHH domain XAV_10845 PF00355 Rieske [2Fe-2S] domain XAV_10845 PF01266 FAD dependent oxidoreductase XAV_10860 PF00561 alpha/beta hydrolase fold XAV_10870 PF01066 CDP-alcohol phosphatidyltransferase XAV_10890 PF03618 Kinase/pyrophosphorylase XAV_10895 PF00391 PEP-utilising enzyme, mobile domain XAV_10895 PF02896 PEP-utilising enzyme, TIM barrel domain XAV_10895 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain XAV_10900 PF00924 Mechanosensitive ion channel XAV_10900 PF05552 Conserved TM helix XAV_10905 PF00929 Exonuclease XAV_10910 PF14437 MafB19-like deaminase XAV_10915 PF02742 Iron dependent repressor, metal binding and dimerisation domain XAV_10915 PF01325 Iron dependent repressor, N-terminal DNA binding domain XAV_10920 PF01566 Natural resistance-associated macrophage protein XAV_10925 PF00561 alpha/beta hydrolase fold XAV_10970 PF00111 2Fe-2S iron-sulfur cluster binding domain XAV_10985 PF03466 LysR substrate binding domain XAV_10985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XAV_10990 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus XAV_10990 PF00361 Proton-conducting membrane transporter XAV_10990 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XAV_10995 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) XAV_11000 PF13086 AAA domain XAV_11000 PF13195 Protein of unknown function (DUF4011) XAV_11000 PF13087 AAA domain XAV_11005 PF00117 Glutamine amidotransferase class-I XAV_11005 PF02540 NAD synthase XAV_11005 PF00958 GMP synthase C terminal domain XAV_11010 PF00571 CBS domain XAV_11010 PF00478 IMP dehydrogenase / GMP reductase domain XAV_11015 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain XAV_11015 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain XAV_11030 PF00483 Nucleotidyl transferase XAV_11035 PF02719 Polysaccharide biosynthesis protein XAV_11040 PF00953 Glycosyl transferase family 4 XAV_11045 PF18073 Rubredoxin metal binding domain XAV_11055 PF00216 Bacterial DNA-binding protein XAV_11060 PF00575 S1 RNA binding domain XAV_11065 PF02224 Cytidylate kinase XAV_11070 PF00444 Ribosomal protein L36 XAV_11080 PF04371 Porphyromonas-type peptidyl-arginine deiminase XAV_11085 PF00795 Carbon-nitrogen hydrolase XAV_11110 PF00528 Binding-protein-dependent transport system inner membrane component XAV_11115 PF00528 Binding-protein-dependent transport system inner membrane component XAV_11135 PF00356 Bacterial regulatory proteins, lacI family XAV_11145 PF03795 YCII-related domain XAV_11150 PF02616 Segregation and condensation protein ScpA XAV_11155 PF04079 Segregation and condensation complex subunit ScpB XAV_11160 PF00849 RNA pseudouridylate synthase XAV_11160 PF01479 S4 domain XAV_11180 PF00795 Carbon-nitrogen hydrolase XAV_11185 PF00155 Aminotransferase class I and II XAV_11190 PF00005 ABC transporter XAV_11195 PF03379 CcmB protein XAV_11200 PF01578 Cytochrome C assembly protein XAV_11210 PF03100 CcmE XAV_11215 PF01578 Cytochrome C assembly protein XAV_11215 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XAV_11220 PF08534 Redoxin XAV_11225 PF03918 Cytochrome C biogenesis protein XAV_11235 PF00561 alpha/beta hydrolase fold XAV_11240 PF00313 'Cold-shock' DNA-binding domain XAV_11245 PF00664 ABC transporter transmembrane region XAV_11245 PF00005 ABC transporter XAV_11250 PF00005 ABC transporter XAV_11250 PF00664 ABC transporter transmembrane region XAV_11285 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH XAV_11345 PF02129 X-Pro dipeptidyl-peptidase (S15 family) XAV_11345 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain XAV_11350 PF01609 Transposase DDE domain XAV_11350 PF05598 Transposase domain (DUF772) XAV_11355 PF00171 Aldehyde dehydrogenase family XAV_11360 PF01472 PUA domain XAV_11360 PF00696 Amino acid kinase family XAV_11375 PF00206 Lyase XAV_11380 PF01118 Semialdehyde dehydrogenase, NAD binding domain XAV_11390 PF00696 Amino acid kinase family XAV_11390 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase XAV_11395 PF07687 Peptidase dimerisation domain XAV_11395 PF01546 Peptidase family M20/M25/M40 XAV_11405 PF00764 Arginosuccinate synthase XAV_11410 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XAV_11410 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XAV_11420 PF09190 DALR domain XAV_11420 PF01406 tRNA synthetases class I (C) catalytic domain XAV_11430 PF02657 Fe-S metabolism associated domain XAV_11440 PF01258 Prokaryotic dksA/traR C4-type zinc finger XAV_11445 PF01809 Putative membrane protein insertion efficiency factor XAV_11450 PF01979 Amidohydrolase family XAV_11455 PF08460 Bacterial SH3 domain XAV_11455 PF01551 Peptidase family M23 XAV_11490 PF01095 Pectinesterase XAV_11495 PF00295 Glycosyl hydrolases family 28 XAV_11505 PF13419 Haloacid dehalogenase-like hydrolase XAV_11515 PF01979 Amidohydrolase family XAV_11525 PF08207 Elongation factor P (EF-P) KOW-like domain XAV_11525 PF09285 Elongation factor P, C-terminal XAV_11525 PF01132 Elongation factor P (EF-P) OB domain XAV_11530 PF04055 Radical SAM superfamily XAV_11535 PF00990 Diguanylate cyclase, GGDEF domain XAV_11535 PF13188 PAS domain XAV_11535 PF03707 Bacterial signalling protein N terminal repeat XAV_11535 PF00563 EAL domain XAV_11545 PF00588 SpoU rRNA Methylase family XAV_11550 PF00459 Inositol monophosphatase family XAV_11555 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XAV_11555 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XAV_11560 PF00545 ribonuclease XAV_11575 PF03880 DbpA RNA binding domain XAV_11575 PF00270 DEAD/DEAH box helicase XAV_11575 PF00271 Helicase conserved C-terminal domain XAV_11580 PF00156 Phosphoribosyl transferase domain XAV_11585 PF02696 Uncharacterized ACR, YdiU/UPF0061 family XAV_11590 PF07859 alpha/beta hydrolase fold XAV_11595 PF14497 Glutathione S-transferase, C-terminal domain XAV_11595 PF02798 Glutathione S-transferase, N-terminal domain XAV_11600 PF00313 'Cold-shock' DNA-binding domain XAV_11605 PF07152 YaeQ protein XAV_11615 PF00990 Diguanylate cyclase, GGDEF domain XAV_11615 PF00563 EAL domain XAV_11615 PF00072 Response regulator receiver domain XAV_11620 PF01435 Peptidase family M48 XAV_11625 PF00749 tRNA synthetases class I (E and Q), catalytic domain XAV_11630 PF00106 short chain dehydrogenase XAV_11635 PF05233 PHB accumulation regulatory domain XAV_11635 PF07879 PHB/PHA accumulation regulator DNA-binding domain XAV_11655 PF08676 MutL C terminal dimerisation domain XAV_11655 PF01119 DNA mismatch repair protein, C-terminal domain XAV_11660 PF11741 AMIN domain XAV_11660 PF01520 N-acetylmuramoyl-L-alanine amidase XAV_11665 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE XAV_11670 PF01256 Carbohydrate kinase XAV_11670 PF03853 YjeF-related protein N-terminus XAV_11680 PF13742 OB-fold nucleic acid binding domain XAV_11680 PF02601 Exonuclease VII, large subunit XAV_11690 PF03781 Sulfatase-modifying factor enzyme 1 XAV_11700 PF01612 3'-5' exonuclease XAV_11700 PF00570 HRDC domain XAV_11730 PF05598 Transposase domain (DUF772) XAV_11730 PF01609 Transposase DDE domain XAV_11760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XAV_11760 PF14824 Sirohaem biosynthesis protein central XAV_11760 PF10414 Sirohaem synthase dimerisation region XAV_11790 PF03454 MoeA C-terminal region (domain IV) XAV_11790 PF03453 MoeA N-terminal region (domain I and II) XAV_11790 PF00994 Probable molybdopterin binding domain XAV_11810 PF00899 ThiF family XAV_11815 PF03453 MoeA N-terminal region (domain I and II) XAV_11815 PF03454 MoeA C-terminal region (domain IV) XAV_11815 PF00994 Probable molybdopterin binding domain XAV_11820 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal XAV_11820 PF01926 50S ribosome-binding GTPase XAV_11825 PF01011 PQQ enzyme repeat XAV_11825 PF13360 PQQ-like domain XAV_11835 PF13464 Domain of unknown function (DUF4115) XAV_11845 PF04055 Radical SAM superfamily XAV_11850 PF00334 Nucleoside diphosphate kinase XAV_11860 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XAV_11860 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XAV_11860 PF00378 Enoyl-CoA hydratase/isomerase XAV_11865 PF02803 Thiolase, C-terminal domain XAV_11865 PF00108 Thiolase, N-terminal domain XAV_11870 PF02537 CrcB-like protein, Camphor Resistance (CrcB) XAV_11875 PF12002 MgsA AAA+ ATPase C terminal XAV_11875 PF16193 AAA C-terminal domain XAV_11875 PF00004 ATPase family associated with various cellular activities (AAA) XAV_11885 PF03548 Outer membrane lipoprotein carrier protein LolA XAV_11895 PF01580 FtsK/SpoIIIE family XAV_11895 PF13491 4TM region of DNA translocase FtsK/SpoIIIE XAV_11895 PF17854 FtsK alpha domain XAV_11895 PF09397 Ftsk gamma domain XAV_11900 PF07992 Pyridine nucleotide-disulphide oxidoreductase XAV_11910 PF03588 Leucyl/phenylalanyl-tRNA protein transferase XAV_11915 PF01176 Translation initiation factor 1A / IF-1 XAV_11920 PF00004 ATPase family associated with various cellular activities (AAA) XAV_11920 PF02861 Clp amino terminal domain, pathogenicity island component XAV_11920 PF10431 C-terminal, D2-small domain, of ClpB protein XAV_11920 PF17871 AAA lid domain XAV_11920 PF07724 AAA domain (Cdc48 subfamily) XAV_11925 PF02617 ATP-dependent Clp protease adaptor protein ClpS XAV_11930 PF00293 NUDIX domain XAV_11940 PF04356 Protein of unknown function (DUF489) XAV_11945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XAV_11945 PF00672 HAMP domain XAV_11945 PF12729 Four helix bundle sensory module for signal transduction XAV_11960 PF00990 Diguanylate cyclase, GGDEF domain XAV_11960 PF03707 Bacterial signalling protein N terminal repeat XAV_11960 PF00563 EAL domain XAV_11965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_11965 PF07730 Histidine kinase XAV_11970 PF00563 EAL domain XAV_11970 PF03707 Bacterial signalling protein N terminal repeat XAV_11970 PF00990 Diguanylate cyclase, GGDEF domain XAV_11975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_11975 PF00989 PAS fold XAV_11975 PF13426 PAS domain XAV_11975 PF13188 PAS domain XAV_11975 PF00512 His Kinase A (phospho-acceptor) domain XAV_12000 PF01584 CheW-like domain XAV_12000 PF00072 Response regulator receiver domain XAV_12010 PF00460 Flagella basal body rod protein XAV_12010 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XAV_12015 PF03963 Flagellar hook capping protein - N-terminal region XAV_12020 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XAV_12020 PF07559 Flagellar basal body protein FlaE XAV_12020 PF00460 Flagella basal body rod protein XAV_12025 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XAV_12025 PF00460 Flagella basal body rod protein XAV_12030 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XAV_12030 PF00460 Flagella basal body rod protein XAV_12035 PF02107 Flagellar L-ring protein XAV_12040 PF02119 Flagellar P-ring protein XAV_12045 PF10135 Rod binding protein XAV_12045 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase XAV_12050 PF07196 Flagellin hook IN motif XAV_12050 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XAV_12055 PF00669 Bacterial flagellin N-terminal helical region XAV_12055 PF00700 Bacterial flagellin C-terminal helical region XAV_12060 PF00700 Bacterial flagellin C-terminal helical region XAV_12060 PF00669 Bacterial flagellin N-terminal helical region XAV_12065 PF02465 Flagellar hook-associated protein 2 N-terminus XAV_12065 PF07195 Flagellar hook-associated protein 2 C-terminus XAV_12065 PF07196 Flagellin hook IN motif XAV_12070 PF02561 Flagellar protein FliS XAV_12085 PF00196 Bacterial regulatory proteins, luxR family XAV_12085 PF00072 Response regulator receiver domain XAV_12090 PF04963 Sigma-54 factor, core binding domain XAV_12090 PF04552 Sigma-54, DNA binding domain XAV_12090 PF00309 Sigma-54 factor, Activator interacting domain (AID) XAV_12095 PF01339 CheB methylesterase XAV_12095 PF00072 Response regulator receiver domain XAV_12100 PF02954 Bacterial regulatory protein, Fis family XAV_12100 PF00158 Sigma-54 interaction domain XAV_12100 PF06490 Flagellar regulatory protein FleQ XAV_12105 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XAV_12115 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XAV_12115 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XAV_12150 PF00534 Glycosyl transferases group 1 XAV_12150 PF00535 Glycosyl transferase family 2 XAV_12155 PF02049 Flagellar hook-basal body complex protein FliE XAV_12160 PF08345 Flagellar M-ring protein C-terminal XAV_12160 PF01514 Secretory protein of YscJ/FliF family XAV_12165 PF14842 FliG N-terminal domain XAV_12165 PF14841 FliG middle domain XAV_12165 PF01706 FliG C-terminal domain XAV_12175 PF18269 T3SS EscN ATPase C-terminal domain XAV_12175 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XAV_12195 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XAV_12195 PF02154 Flagellar motor switch protein FliM XAV_12200 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XAV_12205 PF04347 Flagellar biosynthesis protein, FliO XAV_12210 PF00813 FliP family XAV_12220 PF01313 Bacterial export proteins, family 3 XAV_12225 PF01311 Bacterial export proteins, family 1 XAV_12230 PF13188 PAS domain XAV_12230 PF03707 Bacterial signalling protein N terminal repeat XAV_12230 PF00563 EAL domain XAV_12230 PF00990 Diguanylate cyclase, GGDEF domain XAV_12235 PF00563 EAL domain XAV_12235 PF00990 Diguanylate cyclase, GGDEF domain XAV_12235 PF03707 Bacterial signalling protein N terminal repeat XAV_12235 PF13188 PAS domain XAV_12240 PF03707 Bacterial signalling protein N terminal repeat XAV_12240 PF00990 Diguanylate cyclase, GGDEF domain XAV_12240 PF00563 EAL domain XAV_12245 PF01312 FlhB HrpN YscU SpaS Family XAV_12250 PF00771 FHIPEP family XAV_12255 PF00448 SRP54-type protein, GTPase domain XAV_12260 PF10609 NUBPL iron-transfer P-loop NTPase XAV_12265 PF04545 Sigma-70, region 4 XAV_12265 PF04539 Sigma-70 region 3 XAV_12265 PF04542 Sigma-70 region 2 XAV_12270 PF00072 Response regulator receiver domain XAV_12275 PF04344 Chemotaxis phosphatase, CheZ XAV_12280 PF01584 CheW-like domain XAV_12280 PF01627 Hpt domain XAV_12280 PF00072 Response regulator receiver domain XAV_12280 PF02895 Signal transducing histidine kinase, homodimeric domain XAV_12280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_12305 PF01609 Transposase DDE domain XAV_12305 PF05598 Transposase domain (DUF772) XAV_12330 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XAV_12330 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XAV_12340 PF01618 MotA/TolQ/ExbB proton channel family XAV_12345 PF13677 Membrane MotB of proton-channel complex MotA/MotB XAV_12345 PF00691 OmpA family XAV_12350 PF13614 AAA domain XAV_12365 PF00072 Response regulator receiver domain XAV_12370 PF01627 Hpt domain XAV_12370 PF09078 CheY binding XAV_12370 PF01584 CheW-like domain XAV_12370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_12370 PF02895 Signal transducing histidine kinase, homodimeric domain XAV_12375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XAV_12375 PF02203 Tar ligand binding domain homologue XAV_12375 PF00672 HAMP domain XAV_12395 PF02203 Tar ligand binding domain homologue XAV_12395 PF00672 HAMP domain XAV_12395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XAV_12405 PF02203 Tar ligand binding domain homologue XAV_12405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XAV_12405 PF00672 HAMP domain XAV_12410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XAV_12410 PF00672 HAMP domain XAV_12410 PF02203 Tar ligand binding domain homologue XAV_12420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XAV_12420 PF02203 Tar ligand binding domain homologue XAV_12420 PF00672 HAMP domain XAV_12425 PF02203 Tar ligand binding domain homologue XAV_12425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XAV_12425 PF00672 HAMP domain XAV_12430 PF00672 HAMP domain XAV_12430 PF02203 Tar ligand binding domain homologue XAV_12430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XAV_12435 PF02203 Tar ligand binding domain homologue XAV_12435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XAV_12435 PF00672 HAMP domain XAV_12445 PF07238 PilZ domain XAV_12445 PF07317 Flagellar regulator YcgR XAV_12450 PF01584 CheW-like domain XAV_12460 PF02203 Tar ligand binding domain homologue XAV_12460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XAV_12460 PF00672 HAMP domain XAV_12465 PF03705 CheR methyltransferase, all-alpha domain XAV_12465 PF01739 CheR methyltransferase, SAM binding domain XAV_12470 PF03975 CheD chemotactic sensory transduction XAV_12475 PF00072 Response regulator receiver domain XAV_12475 PF01339 CheB methylesterase XAV_12480 PF03707 Bacterial signalling protein N terminal repeat XAV_12480 PF00990 Diguanylate cyclase, GGDEF domain XAV_12480 PF00563 EAL domain XAV_12485 PF00561 alpha/beta hydrolase fold XAV_12490 PF00330 Aconitase family (aconitate hydratase) XAV_12490 PF11791 Aconitate B N-terminal domain XAV_12490 PF06434 Aconitate hydratase 2 N-terminus XAV_12505 PF00694 Aconitase C-terminal domain XAV_12505 PF00330 Aconitase family (aconitate hydratase) XAV_12515 PF13193 AMP-binding enzyme C-terminal domain XAV_12515 PF00501 AMP-binding enzyme XAV_12520 PF00378 Enoyl-CoA hydratase/isomerase XAV_12525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_12525 PF00512 His Kinase A (phospho-acceptor) domain XAV_12525 PF01627 Hpt domain XAV_12525 PF00072 Response regulator receiver domain XAV_12530 PF00072 Response regulator receiver domain XAV_12530 PF01627 Hpt domain XAV_12530 PF00512 His Kinase A (phospho-acceptor) domain XAV_12530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_12535 PF00072 Response regulator receiver domain XAV_12540 PF00152 tRNA synthetases class II (D, K and N) XAV_12540 PF01336 OB-fold nucleic acid binding domain XAV_12570 PF02272 DHHA1 domain XAV_12570 PF01368 DHH family XAV_12570 PF17768 RecJ OB domain XAV_12580 PF03449 Transcription elongation factor, N-terminal XAV_12580 PF01272 Transcription elongation factor, GreA/GreB, C-term XAV_12585 PF02142 MGS-like domain XAV_12585 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XAV_12585 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XAV_12600 PF00117 Glutamine amidotransferase class-I XAV_12600 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain XAV_12605 PF05173 Dihydrodipicolinate reductase, C-terminus XAV_12605 PF01113 Dihydrodipicolinate reductase, N-terminus XAV_12630 PF07670 Nucleoside recognition XAV_12630 PF02421 Ferrous iron transport protein B XAV_12630 PF07664 Ferrous iron transport protein B C terminus XAV_12640 PF00378 Enoyl-CoA hydratase/isomerase XAV_12650 PF00682 HMGL-like XAV_12655 PF00106 short chain dehydrogenase XAV_12660 PF01132 Elongation factor P (EF-P) OB domain XAV_12660 PF08207 Elongation factor P (EF-P) KOW-like domain XAV_12660 PF09285 Elongation factor P, C-terminal XAV_12680 PF02913 FAD linked oxidases, C-terminal domain XAV_12680 PF01565 FAD binding domain XAV_12685 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XAV_12685 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XAV_12685 PF01842 ACT domain XAV_12695 PF13520 Amino acid permease XAV_12700 PF13520 Amino acid permease XAV_12705 PF00596 Class II Aldolase and Adducin N-terminal domain XAV_12710 PF03079 ARD/ARD' family XAV_12795 PF01502 Phosphoribosyl-AMP cyclohydrolase XAV_12795 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase XAV_12800 PF00977 Histidine biosynthesis protein XAV_12805 PF00977 Histidine biosynthesis protein XAV_12810 PF00117 Glutamine amidotransferase class-I XAV_12815 PF00475 Imidazoleglycerol-phosphate dehydratase XAV_12820 PF00155 Aminotransferase class I and II XAV_12825 PF00815 Histidinol dehydrogenase XAV_12830 PF01634 ATP phosphoribosyltransferase XAV_12830 PF08029 HisG, C-terminal domain XAV_12840 PF03129 Anticodon binding domain XAV_12840 PF13393 Histidyl-tRNA synthetase XAV_12850 PF13545 Crp-like helix-turn-helix domain XAV_12850 PF00027 Cyclic nucleotide-binding domain XAV_12860 PF00291 Pyridoxal-phosphate dependent enzyme XAV_12860 PF14821 Threonine synthase N terminus XAV_12870 PF07519 Tannase and feruloyl esterase XAV_12880 PF08544 GHMP kinases C terminal XAV_12880 PF00288 GHMP kinases N terminal domain XAV_12885 PF03447 Homoserine dehydrogenase, NAD binding domain XAV_12885 PF00742 Homoserine dehydrogenase XAV_12885 PF13840 ACT domain XAV_12885 PF01842 ACT domain XAV_12885 PF00696 Amino acid kinase family XAV_12915 PF02355 Protein export membrane protein XAV_12915 PF07549 SecD/SecF GG Motif XAV_12920 PF02355 Protein export membrane protein XAV_12920 PF13721 SecD export protein N-terminal TM region XAV_12920 PF07549 SecD/SecF GG Motif XAV_12925 PF02699 Preprotein translocase subunit XAV_12930 PF01702 Queuine tRNA-ribosyltransferase XAV_12935 PF02547 Queuosine biosynthesis protein XAV_12975 PF00759 Glycosyl hydrolase family 9 XAV_12975 PF02927 Cellulase N-terminal ig-like domain XAV_12990 PF00037 4Fe-4S binding domain XAV_13000 PF01467 Cytidylyltransferase-like XAV_13010 PF00183 Hsp90 protein XAV_13010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_13030 PF01609 Transposase DDE domain XAV_13030 PF05598 Transposase domain (DUF772) XAV_13055 PF05088 Bacterial NAD-glutamate dehydrogenase XAV_13065 PF00529 HlyD membrane-fusion protein of T1SS XAV_13065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XAV_13070 PF00873 AcrB/AcrD/AcrF family XAV_13075 PF00356 Bacterial regulatory proteins, lacI family XAV_13080 PF00381 PTS HPr component phosphorylation site XAV_13080 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XAV_13080 PF05524 PEP-utilising enzyme, N-terminal XAV_13080 PF00391 PEP-utilising enzyme, mobile domain XAV_13080 PF02896 PEP-utilising enzyme, TIM barrel domain XAV_13085 PF00294 pfkB family carbohydrate kinase XAV_13090 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit XAV_13120 PF02649 Type I GTP cyclohydrolase folE2 XAV_13125 PF01520 N-acetylmuramoyl-L-alanine amidase XAV_13135 PF05598 Transposase domain (DUF772) XAV_13135 PF01609 Transposase DDE domain XAV_13145 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XAV_13145 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XAV_13155 PF16338 Domain of unknown function (DUF4968) XAV_13155 PF17137 Domain of unknown function (DUF5110) XAV_13155 PF01055 Glycosyl hydrolases family 31 XAV_13205 PF03466 LysR substrate binding domain XAV_13205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XAV_13210 PF01081 KDPG and KHG aldolase XAV_13215 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XAV_13215 PF13378 Enolase C-terminal domain-like XAV_13220 PF08450 SMP-30/Gluconolactonase/LRE-like region XAV_13225 PF05035 2-keto-3-deoxy-galactonokinase XAV_13230 PF11953 Domain of unknown function (DUF3470) XAV_13230 PF00037 4Fe-4S binding domain XAV_13240 PF00701 Dihydrodipicolinate synthetase family XAV_13255 PF00578 AhpC/TSA family XAV_13260 PF02562 PhoH-like protein XAV_13260 PF13638 PIN domain XAV_13275 PF08543 Phosphomethylpyrimidine kinase XAV_13300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XAV_13300 PF03466 LysR substrate binding domain XAV_13305 PF17954 Quercetinase C-terminal cupin domain XAV_13305 PF02678 Pirin XAV_13310 PF13426 PAS domain XAV_13310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XAV_13310 PF08447 PAS fold XAV_13345 PF08212 Lipocalin-like domain XAV_13355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XAV_13355 PF12806 Acetyl-CoA dehydrogenase C-terminal like XAV_13355 PF02770 Acyl-CoA dehydrogenase, middle domain XAV_13355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XAV_13365 PF02779 Transketolase, pyrimidine binding domain XAV_13365 PF13292 1-deoxy-D-xylulose-5-phosphate synthase XAV_13365 PF02780 Transketolase, C-terminal domain XAV_13385 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XAV_13410 PF03808 Glycosyl transferase WecB/TagA/CpsF family XAV_13425 PF14667 Polysaccharide biosynthesis C-terminal domain XAV_13435 PF00534 Glycosyl transferases group 1 XAV_13435 PF13439 Glycosyltransferase Family 4 XAV_13455 PF02397 Bacterial sugar transferase XAV_13475 PF13411 MerR HTH family regulatory protein XAV_13480 PF00216 Bacterial DNA-binding protein XAV_13485 PF03484 tRNA synthetase B5 domain XAV_13485 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain XAV_13485 PF03147 Ferredoxin-fold anticodon binding domain XAV_13485 PF03483 B3/4 domain XAV_13485 PF01588 Putative tRNA binding domain XAV_13490 PF01409 tRNA synthetases class II core domain (F) XAV_13490 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain XAV_13495 PF00453 Ribosomal protein L20 XAV_13500 PF01632 Ribosomal protein L35 XAV_13505 PF00707 Translation initiation factor IF-3, C-terminal domain XAV_13505 PF05198 Translation initiation factor IF-3, N-terminal domain XAV_13510 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XAV_13510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XAV_13510 PF02824 TGS domain XAV_13510 PF03129 Anticodon binding domain XAV_13540 PF13683 Integrase core domain XAV_13540 PF13276 HTH-like domain XAV_13565 PF00271 Helicase conserved C-terminal domain XAV_13565 PF04851 Type III restriction enzyme, res subunit XAV_13565 PF02151 UvrB/uvrC motif XAV_13565 PF17757 UvrB interaction domain XAV_13565 PF12344 Ultra-violet resistance protein B XAV_13580 PF07963 Prokaryotic N-terminal methylation motif XAV_13580 PF00114 Pilin (bacterial filament) XAV_13585 PF05567 Neisseria PilC beta-propeller domain XAV_13605 PF00114 Pilin (bacterial filament) XAV_13605 PF07963 Prokaryotic N-terminal methylation motif XAV_13610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_13610 PF07694 5TMR of 5TMR-LYT XAV_13610 PF06580 Histidine kinase XAV_13615 PF03641 Possible lysine decarboxylase XAV_13615 PF11892 Domain of unknown function (DUF3412) XAV_13615 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases XAV_13620 PF00593 TonB dependent receptor XAV_13625 PF01914 MarC family integral membrane protein XAV_13635 PF00462 Glutaredoxin XAV_13640 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XAV_13640 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XAV_13645 PF02222 ATP-grasp domain XAV_13645 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain XAV_13650 PF00731 AIR carboxylase XAV_13660 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain XAV_13660 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain XAV_13670 PF01138 3' exoribonuclease family, domain 1 XAV_13670 PF03725 3' exoribonuclease family, domain 2 XAV_13670 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain XAV_13670 PF00575 S1 RNA binding domain XAV_13670 PF00013 KH domain XAV_13675 PF00312 Ribosomal protein S15 XAV_13680 PF16198 tRNA pseudouridylate synthase B C-terminal domain XAV_13680 PF01509 TruB family pseudouridylate synthase (N terminal domain) XAV_13680 PF09157 Pseudouridine synthase II TruB, C-terminal XAV_13685 PF02033 Ribosome-binding factor A XAV_13690 PF00009 Elongation factor Tu GTP binding domain XAV_13690 PF04760 Translation initiation factor IF-2, N-terminal region XAV_13690 PF11987 Translation-initiation factor 2 XAV_13690 PF08364 Bacterial translation initiation factor IF-2 associated region XAV_13695 PF00575 S1 RNA binding domain XAV_13695 PF13184 NusA-like KH domain XAV_13695 PF08529 NusA N-terminal domain XAV_13700 PF02576 RimP N-terminal domain XAV_13700 PF17384 RimP C-terminal SH3 domain XAV_13710 PF00361 Proton-conducting membrane transporter XAV_13715 PF00361 Proton-conducting membrane transporter XAV_13715 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus XAV_13720 PF00361 Proton-conducting membrane transporter XAV_13720 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XAV_13725 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XAV_13730 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 XAV_13735 PF12838 4Fe-4S dicluster domain XAV_13740 PF00146 NADH dehydrogenase XAV_13745 PF00384 Molybdopterin oxidoreductase XAV_13745 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XAV_13745 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal XAV_13750 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region XAV_13750 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit XAV_13750 PF10531 SLBB domain XAV_13760 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit XAV_13765 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit XAV_13770 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit XAV_13775 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 XAV_13790 PF00121 Triosephosphate isomerase XAV_13795 PF00106 short chain dehydrogenase XAV_13810 PF00563 EAL domain XAV_13810 PF00990 Diguanylate cyclase, GGDEF domain XAV_13810 PF03707 Bacterial signalling protein N terminal repeat XAV_13825 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XAV_13825 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XAV_13825 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XAV_13825 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XAV_13830 PF17848 Acetyl-coA carboxylase zinc finger domain XAV_13830 PF01039 Carboxyl transferase domain XAV_13835 PF00290 Tryptophan synthase alpha chain XAV_13845 PF00291 Pyridoxal-phosphate dependent enzyme XAV_13850 PF03466 LysR substrate binding domain XAV_13850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XAV_13855 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase XAV_13860 PF01416 tRNA pseudouridine synthase XAV_13875 PF02774 Semialdehyde dehydrogenase, dimerisation domain XAV_13875 PF01118 Semialdehyde dehydrogenase, NAD binding domain XAV_13880 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XAV_13880 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XAV_13885 PF01264 Chorismate synthase XAV_13890 PF05175 Methyltransferase small domain XAV_13895 PF02630 SCO1/SenC XAV_13900 PF02666 Phosphatidylserine decarboxylase XAV_13910 PF05872 Bacterial protein of unknown function (DUF853) XAV_13930 PF18693 TRAM domain XAV_13930 PF00919 Uncharacterized protein family UPF0004 XAV_13930 PF04055 Radical SAM superfamily XAV_13935 PF01738 Dienelactone hydrolase family XAV_13955 PF00692 dUTPase XAV_13960 PF10609 NUBPL iron-transfer P-loop NTPase XAV_13980 PF01431 Peptidase family M13 XAV_13980 PF05649 Peptidase family M13 XAV_13985 PF01431 Peptidase family M13 XAV_13985 PF05649 Peptidase family M13 XAV_14005 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XAV_14005 PF07992 Pyridine nucleotide-disulphide oxidoreductase XAV_14010 PF01266 FAD dependent oxidoreductase XAV_14015 PF04235 Protein of unknown function (DUF418) XAV_14020 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XAV_14025 PF00877 NlpC/P60 family XAV_14030 PF00877 NlpC/P60 family XAV_14045 PF13649 Methyltransferase domain XAV_14050 PF00375 Sodium:dicarboxylate symporter family XAV_14055 PF00245 Alkaline phosphatase XAV_14060 PF09179 TilS substrate binding domain XAV_14060 PF11734 TilS substrate C-terminal domain XAV_14060 PF01171 PP-loop family XAV_14065 PF02609 Exonuclease VII small subunit XAV_14070 PF00348 Polyprenyl synthetase XAV_14085 PF01523 Putative modulator of DNA gyrase XAV_14090 PF04751 Protein of unknown function (DUF615) XAV_14095 PF01523 Putative modulator of DNA gyrase XAV_14105 PF13502 AsmA-like C-terminal region XAV_14105 PF13116 Protein of unknown function XAV_14110 PF10150 Ribonuclease E/G family XAV_14110 PF00575 S1 RNA binding domain XAV_14115 PF02545 Maf-like protein XAV_14120 PF04402 Protein of unknown function (DUF541) XAV_14130 PF03544 Gram-negative bacterial TonB protein C-terminal XAV_14135 PF02590 Predicted SPOUT methyltransferase XAV_14155 PF01467 Cytidylyltransferase-like XAV_14170 PF08264 Anticodon-binding domain of tRNA XAV_14170 PF00133 tRNA synthetases class I (I, L, M and V) XAV_14170 PF13603 Leucyl-tRNA synthetase, Domain 2 XAV_14180 PF00085 Thioredoxin XAV_14205 PF04070 Domain of unknown function (DUF378) XAV_14210 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XAV_14260 PF00005 ABC transporter XAV_14260 PF00664 ABC transporter transmembrane region XAV_14270 PF00873 AcrB/AcrD/AcrF family XAV_14285 PF02321 Outer membrane efflux protein XAV_14290 PF00072 Response regulator receiver domain XAV_14290 PF00486 Transcriptional regulatory protein, C terminal XAV_14295 PF00672 HAMP domain XAV_14295 PF00512 His Kinase A (phospho-acceptor) domain XAV_14295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_14300 PF00999 Sodium/hydrogen exchanger family XAV_14305 PF00144 Beta-lactamase XAV_14310 PF03737 Aldolase/RraA XAV_14340 PF00990 Diguanylate cyclase, GGDEF domain XAV_14340 PF00072 Response regulator receiver domain XAV_14345 PF01479 S4 domain XAV_14345 PF00849 RNA pseudouridylate synthase XAV_14350 PF08448 PAS fold XAV_14350 PF00563 EAL domain XAV_14350 PF00990 Diguanylate cyclase, GGDEF domain XAV_14355 PF00270 DEAD/DEAH box helicase XAV_14355 PF00271 Helicase conserved C-terminal domain XAV_14355 PF03880 DbpA RNA binding domain XAV_14405 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain XAV_14405 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain XAV_14410 PF00654 Voltage gated chloride channel XAV_14415 PF00107 Zinc-binding dehydrogenase XAV_14415 PF08240 Alcohol dehydrogenase GroES-like domain XAV_14430 PF00593 TonB dependent receptor XAV_14430 PF07715 TonB-dependent Receptor Plug Domain XAV_14440 PF01483 Proprotein convertase P-domain XAV_14440 PF00082 Subtilase family XAV_14475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XAV_14475 PF03466 LysR substrate binding domain XAV_14500 PF02321 Outer membrane efflux protein XAV_14505 PF00873 AcrB/AcrD/AcrF family XAV_14510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XAV_14510 PF00529 HlyD membrane-fusion protein of T1SS XAV_14530 PF01475 Ferric uptake regulator family XAV_14535 PF00749 tRNA synthetases class I (E and Q), catalytic domain XAV_14560 PF06123 Inner membrane protein CreD XAV_14575 PF00072 Response regulator receiver domain XAV_14575 PF00486 Transcriptional regulatory protein, C terminal XAV_14580 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ XAV_14590 PF17757 UvrB interaction domain XAV_14590 PF02559 CarD-like/TRCF domain XAV_14590 PF00270 DEAD/DEAH box helicase XAV_14590 PF00271 Helicase conserved C-terminal domain XAV_14590 PF03461 TRCF domain XAV_14600 PF02895 Signal transducing histidine kinase, homodimeric domain XAV_14600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_14600 PF01627 Hpt domain XAV_14600 PF01584 CheW-like domain XAV_14600 PF09078 CheY binding XAV_14605 PF00672 HAMP domain XAV_14605 PF02203 Tar ligand binding domain homologue XAV_14605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XAV_14610 PF01584 CheW-like domain XAV_14615 PF00990 Diguanylate cyclase, GGDEF domain XAV_14615 PF03707 Bacterial signalling protein N terminal repeat XAV_14615 PF00563 EAL domain XAV_14620 PF01739 CheR methyltransferase, SAM binding domain XAV_14620 PF03705 CheR methyltransferase, all-alpha domain XAV_14625 PF00072 Response regulator receiver domain XAV_14625 PF01339 CheB methylesterase XAV_14635 PF01431 Peptidase family M13 XAV_14635 PF05649 Peptidase family M13 XAV_14645 PF00300 Histidine phosphatase superfamily (branch 1) XAV_14650 PF04493 Endonuclease V XAV_14670 PF05726 Pirin C-terminal cupin domain XAV_14670 PF02678 Pirin XAV_14675 PF02554 Carbon starvation protein CstA XAV_14675 PF13722 5TM C-terminal transporter carbon starvation CstA XAV_14680 PF04328 Selenoprotein, putative XAV_14715 PF02625 XdhC and CoxI family XAV_14715 PF13478 XdhC Rossmann domain XAV_14720 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XAV_14720 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XAV_14725 PF03450 CO dehydrogenase flavoprotein C-terminal domain XAV_14725 PF00941 FAD binding domain in molybdopterin dehydrogenase XAV_14730 PF10518 TAT (twin-arginine translocation) pathway signal sequence XAV_14730 PF01799 [2Fe-2S] binding domain XAV_14730 PF00111 2Fe-2S iron-sulfur cluster binding domain XAV_14740 PF00360 Phytochrome region XAV_14740 PF00563 EAL domain XAV_14740 PF00990 Diguanylate cyclase, GGDEF domain XAV_14740 PF01590 GAF domain XAV_14745 PF00436 Single-strand binding protein family XAV_14750 PF00348 Polyprenyl synthetase XAV_14760 PF08245 Mur ligase middle domain XAV_14760 PF02875 Mur ligase family, glutamate ligase domain XAV_14775 PF00696 Amino acid kinase family XAV_14775 PF01842 ACT domain XAV_14785 PF02567 Phenazine biosynthesis-like protein XAV_14795 PF02566 OsmC-like protein XAV_14800 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XAV_14800 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XAV_14805 PF03652 Holliday junction resolvase XAV_14810 PF02622 Uncharacterized ACR, COG1678 XAV_14815 PF13673 Acetyltransferase (GNAT) domain XAV_14815 PF03352 Methyladenine glycosylase XAV_14815 PF13302 Acetyltransferase (GNAT) domain XAV_14815 PF00117 Glutamine amidotransferase class-I XAV_14815 PF00958 GMP synthase C terminal domain XAV_14830 PF00437 Type II/IV secretion system protein XAV_14835 PF00437 Type II/IV secretion system protein XAV_14840 PF01168 Alanine racemase, N-terminal domain XAV_14845 PF14748 Pyrroline-5-carboxylate reductase dimerisation XAV_14845 PF03807 NADP oxidoreductase coenzyme F420-dependent XAV_14895 PF02082 Transcriptional regulator XAV_14900 PF01458 Uncharacterized protein family (UPF0051) XAV_14905 PF00005 ABC transporter XAV_14910 PF01458 Uncharacterized protein family (UPF0051) XAV_14915 PF00266 Aminotransferase class-V XAV_14920 PF00583 Acetyltransferase (GNAT) family XAV_14925 PF00355 Rieske [2Fe-2S] domain XAV_14930 PF07715 TonB-dependent Receptor Plug Domain XAV_14930 PF00593 TonB dependent receptor XAV_14935 PF18331 PKHD-type hydroxylase C-terminal domain XAV_14935 PF13640 2OG-Fe(II) oxygenase superfamily XAV_14965 PF07687 Peptidase dimerisation domain XAV_14965 PF01546 Peptidase family M20/M25/M40 XAV_14975 PF01636 Phosphotransferase enzyme family XAV_14980 PF00483 Nucleotidyl transferase XAV_14985 PF00308 Bacterial dnaA protein XAV_14990 PF01594 AI-2E family transporter XAV_15000 PF02769 AIR synthase related protein, C-terminal domain XAV_15000 PF00586 AIR synthase related protein, N-terminal domain XAV_15015 PF00551 Formyl transferase XAV_15040 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XAV_15045 PF01722 BolA-like protein XAV_15050 PF00571 CBS domain XAV_15050 PF01380 SIS domain XAV_15065 PF03968 OstA-like protein XAV_15070 PF00005 ABC transporter XAV_15075 PF04963 Sigma-54 factor, core binding domain XAV_15075 PF00309 Sigma-54 factor, Activator interacting domain (AID) XAV_15075 PF04552 Sigma-54, DNA binding domain XAV_15080 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein XAV_15085 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XAV_15090 PF02603 HPr Serine kinase N terminus XAV_15090 PF07475 HPr Serine kinase C-terminal domain XAV_15095 PF03668 P-loop ATPase protein family XAV_15130 PF00593 TonB dependent receptor XAV_15130 PF07660 Secretin and TonB N terminus short domain XAV_15130 PF07715 TonB-dependent Receptor Plug Domain XAV_15140 PF04183 IucA / IucC family XAV_15140 PF06276 Ferric iron reductase FhuF-like transporter XAV_15145 PF07690 Major Facilitator Superfamily XAV_15155 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XAV_15155 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain XAV_15160 PF02654 Cobalamin-5-phosphate synthase XAV_15170 PF02277 Phosphoribosyltransferase XAV_15180 PF17871 AAA lid domain XAV_15180 PF02861 Clp amino terminal domain, pathogenicity island component XAV_15180 PF10431 C-terminal, D2-small domain, of ClpB protein XAV_15180 PF00004 ATPase family associated with various cellular activities (AAA) XAV_15180 PF07724 AAA domain (Cdc48 subfamily) XAV_15185 PF01541 GIY-YIG catalytic domain XAV_15255 PF00593 TonB dependent receptor XAV_15255 PF07715 TonB-dependent Receptor Plug Domain XAV_15280 PF02358 Trehalose-phosphatase XAV_15285 PF00723 Glycosyl hydrolases family 15 XAV_15290 PF00982 Glycosyltransferase family 20 XAV_15295 PF01011 PQQ enzyme repeat XAV_15305 PF03377 TAL effector repeat XAV_15325 PF03377 TAL effector repeat XAV_15380 PF00072 Response regulator receiver domain XAV_15380 PF00196 Bacterial regulatory proteins, luxR family XAV_15385 PF07730 Histidine kinase XAV_15395 PF03775 Septum formation inhibitor MinC, C-terminal domain XAV_15395 PF05209 Septum formation inhibitor MinC, N-terminal domain XAV_15400 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XAV_15405 PF03776 Septum formation topological specificity factor MinE XAV_15415 PF08521 Two-component sensor kinase N-terminal XAV_15415 PF00512 His Kinase A (phospho-acceptor) domain XAV_15415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_15420 PF00072 Response regulator receiver domain XAV_15420 PF00486 Transcriptional regulatory protein, C terminal XAV_15435 PF08019 Phosphoethanolamine transferase EptA/EptB XAV_15435 PF00884 Sulfatase XAV_15450 PF07690 Major Facilitator Superfamily XAV_15455 PF00005 ABC transporter XAV_15455 PF00664 ABC transporter transmembrane region XAV_15455 PF03412 Peptidase C39 family XAV_15475 PF02347 Glycine cleavage system P-protein XAV_15490 PF00248 Aldo/keto reductase family XAV_15495 PF00199 Catalase XAV_15495 PF06628 Catalase-related immune-responsive XAV_15495 PF18011 C-terminal domain found in long catalases XAV_15525 PF12833 Helix-turn-helix domain XAV_15525 PF02311 AraC-like ligand binding domain XAV_15540 PF00326 Prolyl oligopeptidase family XAV_15540 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XAV_15540 PF07676 WD40-like Beta Propeller Repeat XAV_15550 PF03169 OPT oligopeptide transporter protein XAV_15570 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XAV_15570 PF14579 Helix-hairpin-helix motif XAV_15570 PF02811 PHP domain XAV_15570 PF07733 Bacterial DNA polymerase III alpha NTPase domain XAV_15585 PF00717 Peptidase S24-like XAV_15585 PF01726 LexA DNA binding domain XAV_15620 PF01799 [2Fe-2S] binding domain XAV_15620 PF00111 2Fe-2S iron-sulfur cluster binding domain XAV_15625 PF03450 CO dehydrogenase flavoprotein C-terminal domain XAV_15625 PF00941 FAD binding domain in molybdopterin dehydrogenase XAV_15630 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XAV_15630 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XAV_15675 PF07992 Pyridine nucleotide-disulphide oxidoreductase XAV_15700 PF00300 Histidine phosphatase superfamily (branch 1) XAV_15700 PF13456 Reverse transcriptase-like XAV_15735 PF01420 Type I restriction modification DNA specificity domain XAV_15755 PF01420 Type I restriction modification DNA specificity domain XAV_15760 PF12161 HsdM N-terminal domain XAV_15760 PF02384 N-6 DNA Methylase XAV_15775 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) XAV_15775 PF04851 Type III restriction enzyme, res subunit XAV_15775 PF08463 EcoEI R protein C-terminal XAV_15775 PF00271 Helicase conserved C-terminal domain XAV_15815 PF02794 RTX toxin acyltransferase family XAV_15820 PF07690 Major Facilitator Superfamily XAV_15905 PF02391 MoaE protein XAV_15910 PF02597 ThiS family XAV_15915 PF01967 MoaC family XAV_15920 PF04055 Radical SAM superfamily XAV_15920 PF06463 Molybdenum Cofactor Synthesis C XAV_15925 PF00753 Metallo-beta-lactamase superfamily XAV_15925 PF12706 Beta-lactamase superfamily domain XAV_15935 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XAV_15955 PF00929 Exonuclease XAV_15960 PF00075 RNase H XAV_15970 PF16123 Hydroxyacylglutathione hydrolase C-terminus XAV_15970 PF00753 Metallo-beta-lactamase superfamily XAV_16000 PF00216 Bacterial DNA-binding protein XAV_16005 PF02190 ATP-dependent protease La (LON) substrate-binding domain XAV_16005 PF05362 Lon protease (S16) C-terminal proteolytic domain XAV_16005 PF00004 ATPase family associated with various cellular activities (AAA) XAV_16010 PF10431 C-terminal, D2-small domain, of ClpB protein XAV_16010 PF06689 ClpX C4-type zinc finger XAV_16010 PF07724 AAA domain (Cdc48 subfamily) XAV_16015 PF00574 Clp protease XAV_16020 PF05698 Bacterial trigger factor protein (TF) C-terminus XAV_16020 PF05697 Bacterial trigger factor protein (TF) XAV_16080 PF18324 Hypothetical protein TT1725 XAV_16080 PF00180 Isocitrate/isopropylmalate dehydrogenase XAV_16090 PF00462 Glutaredoxin XAV_16095 PF01435 Peptidase family M48 XAV_16095 PF13181 Tetratricopeptide repeat XAV_16100 PF00486 Transcriptional regulatory protein, C terminal XAV_16100 PF00072 Response regulator receiver domain XAV_16105 PF00989 PAS fold XAV_16105 PF00512 His Kinase A (phospho-acceptor) domain XAV_16105 PF11808 Phosphate regulon sensor protein PhoR XAV_16105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_16110 PF13089 Polyphosphate kinase N-terminal domain XAV_16110 PF13090 Polyphosphate kinase C-terminal domain 2 XAV_16110 PF02503 Polyphosphate kinase middle domain XAV_16110 PF17941 Polyphosphate kinase C-terminal domain 1 XAV_16115 PF02541 Ppx/GppA phosphatase family XAV_16120 PF13439 Glycosyltransferase Family 4 XAV_16120 PF00534 Glycosyl transferases group 1 XAV_16125 PF01569 PAP2 superfamily XAV_16130 PF00149 Calcineurin-like phosphoesterase XAV_16145 PF04305 Protein of unknown function (DUF455) XAV_16150 PF00156 Phosphoribosyl transferase domain XAV_16165 PF08245 Mur ligase middle domain XAV_16165 PF02875 Mur ligase family, glutamate ligase domain XAV_16185 PF00300 Histidine phosphatase superfamily (branch 1) XAV_16195 PF01609 Transposase DDE domain XAV_16195 PF05598 Transposase domain (DUF772) XAV_16200 PF05506 Domain of unknown function (DUF756) XAV_16200 PF04185 Phosphoesterase family XAV_16215 PF00107 Zinc-binding dehydrogenase XAV_16215 PF08240 Alcohol dehydrogenase GroES-like domain XAV_16225 PF12857 TOBE-like domain XAV_16225 PF17850 CysA C-terminal regulatory domain XAV_16225 PF00005 ABC transporter XAV_16230 PF00528 Binding-protein-dependent transport system inner membrane component XAV_16235 PF00528 Binding-protein-dependent transport system inner membrane component XAV_16245 PF00155 Aminotransferase class I and II XAV_16255 PF00849 RNA pseudouridylate synthase XAV_16265 PF00691 OmpA family XAV_16265 PF00223 Photosystem I psaA/psaB protein XAV_16270 PF00107 Zinc-binding dehydrogenase XAV_16270 PF08240 Alcohol dehydrogenase GroES-like domain XAV_16275 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XAV_16275 PF07992 Pyridine nucleotide-disulphide oxidoreductase XAV_16300 PF00056 lactate/malate dehydrogenase, NAD binding domain XAV_16300 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain XAV_16305 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XAV_16335 PF01474 Class-II DAHP synthetase family XAV_16345 PF02600 Disulfide bond formation protein DsbB XAV_16350 PF01196 Ribosomal protein L17 XAV_16355 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain XAV_16355 PF01000 RNA polymerase Rpb3/RpoA insert domain XAV_16355 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain XAV_16360 PF01479 S4 domain XAV_16360 PF00163 Ribosomal protein S4/S9 N-terminal domain XAV_16365 PF00411 Ribosomal protein S11 XAV_16370 PF00416 Ribosomal protein S13/S18 XAV_16375 PF00344 SecY translocase XAV_16380 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A XAV_16385 PF00327 Ribosomal protein L30p/L7e XAV_16390 PF03719 Ribosomal protein S5, C-terminal domain XAV_16390 PF00333 Ribosomal protein S5, N-terminal domain XAV_16395 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast XAV_16400 PF00347 Ribosomal protein L6 XAV_16405 PF00410 Ribosomal protein S8 XAV_16410 PF00253 Ribosomal protein S14p/S29e XAV_16415 PF00281 Ribosomal protein L5 XAV_16415 PF00673 ribosomal L5P family C-terminus XAV_16420 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 XAV_16420 PF00467 KOW motif XAV_16425 PF00238 Ribosomal protein L14p/L23e XAV_16430 PF00366 Ribosomal protein S17 XAV_16435 PF00831 Ribosomal L29 protein XAV_16440 PF00252 Ribosomal protein L16p/L10e XAV_16445 PF00189 Ribosomal protein S3, C-terminal domain XAV_16445 PF07650 KH domain XAV_16450 PF00237 Ribosomal protein L22p/L17e XAV_16455 PF00203 Ribosomal protein S19 XAV_16460 PF03947 Ribosomal Proteins L2, C-terminal domain XAV_16460 PF00181 Ribosomal Proteins L2, RNA binding domain XAV_16465 PF00276 Ribosomal protein L23 XAV_16470 PF00573 Ribosomal protein L4/L1 family XAV_16475 PF00297 Ribosomal protein L3 XAV_16480 PF00338 Ribosomal protein S10p/S20e XAV_16495 PF03143 Elongation factor Tu C-terminal domain XAV_16495 PF03144 Elongation factor Tu domain 2 XAV_16495 PF00009 Elongation factor Tu GTP binding domain XAV_16500 PF03764 Elongation factor G, domain IV XAV_16500 PF00009 Elongation factor Tu GTP binding domain XAV_16500 PF03144 Elongation factor Tu domain 2 XAV_16500 PF14492 Elongation Factor G, domain II XAV_16500 PF00679 Elongation factor G C-terminus XAV_16505 PF00177 Ribosomal protein S7p/S5e XAV_16510 PF00164 Ribosomal protein S12/S23 XAV_16515 PF04998 RNA polymerase Rpb1, domain 5 XAV_16515 PF05000 RNA polymerase Rpb1, domain 4 XAV_16515 PF04997 RNA polymerase Rpb1, domain 1 XAV_16515 PF04983 RNA polymerase Rpb1, domain 3 XAV_16515 PF00623 RNA polymerase Rpb1, domain 2 XAV_16520 PF00562 RNA polymerase Rpb2, domain 6 XAV_16520 PF04563 RNA polymerase beta subunit XAV_16520 PF04561 RNA polymerase Rpb2, domain 2 XAV_16520 PF04565 RNA polymerase Rpb2, domain 3 XAV_16520 PF10385 RNA polymerase beta subunit external 1 domain XAV_16520 PF04560 RNA polymerase Rpb2, domain 7 XAV_16525 PF00542 Ribosomal protein L7/L12 C-terminal domain XAV_16525 PF16320 Ribosomal protein L7/L12 dimerisation domain XAV_16530 PF00466 Ribosomal protein L10 XAV_16535 PF00687 Ribosomal protein L1p/L10e family XAV_16540 PF03946 Ribosomal protein L11, N-terminal domain XAV_16540 PF00298 Ribosomal protein L11, RNA binding domain XAV_16545 PF02357 Transcription termination factor nusG XAV_16545 PF00467 KOW motif XAV_16550 PF00584 SecE/Sec61-gamma subunits of protein translocation complex XAV_16560 PF03143 Elongation factor Tu C-terminal domain XAV_16560 PF03144 Elongation factor Tu domain 2 XAV_16560 PF00009 Elongation factor Tu GTP binding domain XAV_16580 PF06071 Protein of unknown function (DUF933) XAV_16580 PF01926 50S ribosome-binding GTPase XAV_16585 PF01195 Peptidyl-tRNA hydrolase XAV_16590 PF01386 Ribosomal L25p family XAV_16590 PF14693 Ribosomal protein TL5, C-terminal domain XAV_16595 PF14572 Phosphoribosyl synthetase-associated domain XAV_16595 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase XAV_16605 PF08544 GHMP kinases C terminal XAV_16605 PF00288 GHMP kinases N terminal domain XAV_16610 PF03550 Outer membrane lipoprotein LolB XAV_16620 PF01488 Shikimate / quinate 5-dehydrogenase XAV_16620 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain XAV_16620 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain XAV_16625 PF03462 PCRF domain XAV_16625 PF00472 RF-1 domain XAV_16640 PF00994 Probable molybdopterin binding domain XAV_16645 PF03976 Polyphosphate kinase 2 (PPK2) XAV_16655 PF00708 Acylphosphatase XAV_16660 PF08534 Redoxin XAV_16665 PF03631 Virulence factor BrkB XAV_16670 PF03358 NADPH-dependent FMN reductase XAV_16690 PF04073 Aminoacyl-tRNA editing domain XAV_16695 PF04151 Bacterial pre-peptidase C-terminal domain XAV_16695 PF00082 Subtilase family XAV_16700 PF01063 Amino-transferase class IV XAV_16765 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XAV_16765 PF00476 DNA polymerase family A XAV_16765 PF01612 3'-5' exonuclease XAV_16765 PF01367 5'-3' exonuclease, C-terminal SAM fold XAV_16770 PF00293 NUDIX domain XAV_16780 PF00561 alpha/beta hydrolase fold XAV_16785 PF05175 Methyltransferase small domain XAV_16785 PF17827 PrmC N-terminal domain XAV_16790 PF00578 AhpC/TSA family XAV_16790 PF10417 C-terminal domain of 1-Cys peroxiredoxin XAV_16795 PF07992 Pyridine nucleotide-disulphide oxidoreductase XAV_16795 PF13192 Thioredoxin domain XAV_16800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XAV_16800 PF03466 LysR substrate binding domain XAV_16805 PF01272 Transcription elongation factor, GreA/GreB, C-term XAV_16805 PF14760 Rnk N-terminus XAV_16810 PF00923 Transaldolase/Fructose-6-phosphate aldolase XAV_16820 PF01625 Peptide methionine sulfoxide reductase XAV_16830 PF00072 Response regulator receiver domain XAV_16830 PF00196 Bacterial regulatory proteins, luxR family XAV_16850 PF00072 Response regulator receiver domain XAV_16850 PF00990 Diguanylate cyclase, GGDEF domain XAV_16865 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain XAV_16865 PF00749 tRNA synthetases class I (E and Q), catalytic domain XAV_16870 PF00892 EamA-like transporter family XAV_16890 PF01728 FtsJ-like methyltransferase XAV_16890 PF18125 RlmM ferredoxin-like domain XAV_16895 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XAV_16895 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XAV_16900 PF08450 SMP-30/Gluconolactonase/LRE-like region XAV_16920 PF00378 Enoyl-CoA hydratase/isomerase XAV_16925 PF00171 Aldehyde dehydrogenase family XAV_16930 PF13193 AMP-binding enzyme C-terminal domain XAV_16930 PF00501 AMP-binding enzyme XAV_16935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XAV_16935 PF03466 LysR substrate binding domain XAV_16940 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit XAV_16940 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XAV_16980 PF01494 FAD binding domain XAV_16985 PF01494 FAD binding domain XAV_16995 PF01923 Cobalamin adenosyltransferase XAV_17000 PF00850 Histone deacetylase domain XAV_17005 PF04453 LPS transport system D XAV_17005 PF03968 OstA-like protein XAV_17010 PF00639 PPIC-type PPIASE domain XAV_17010 PF09312 SurA N-terminal domain XAV_17015 PF04166 Pyridoxal phosphate biosynthetic protein PdxA XAV_17020 PF00398 Ribosomal RNA adenine dimethylase XAV_17025 PF04379 ApaG domain XAV_17030 PF00149 Calcineurin-like phosphoesterase XAV_17040 PF00186 Dihydrofolate reductase XAV_17050 PF00303 Thymidylate synthase XAV_17055 PF01790 Prolipoprotein diacylglyceryl transferase XAV_17065 PF04536 TPM domain XAV_17075 PF01219 Prokaryotic diacylglycerol kinase XAV_17085 PF08521 Two-component sensor kinase N-terminal XAV_17085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_17085 PF00512 His Kinase A (phospho-acceptor) domain XAV_17090 PF00072 Response regulator receiver domain XAV_17090 PF00486 Transcriptional regulatory protein, C terminal XAV_17095 PF13472 GDSL-like Lipase/Acylhydrolase family XAV_17100 PF00005 ABC transporter XAV_17110 PF02668 Taurine catabolism dioxygenase TauD, TfdA family XAV_17120 PF00005 ABC transporter XAV_17125 PF00528 Binding-protein-dependent transport system inner membrane component XAV_17150 PF00248 Aldo/keto reductase family XAV_17155 PF07662 Na+ dependent nucleoside transporter C-terminus XAV_17155 PF07670 Nucleoside recognition XAV_17155 PF01773 Na+ dependent nucleoside transporter N-terminus XAV_17160 PF00294 pfkB family carbohydrate kinase XAV_17205 PF01207 Dihydrouridine synthase (Dus) XAV_17210 PF13649 Methyltransferase domain XAV_17220 PF00438 S-adenosylmethionine synthetase, N-terminal domain XAV_17220 PF02772 S-adenosylmethionine synthetase, central domain XAV_17220 PF02773 S-adenosylmethionine synthetase, C-terminal domain XAV_17225 PF00328 Histidine phosphatase superfamily (branch 2) XAV_17245 PF00425 chorismate binding enzyme XAV_17245 PF04715 Anthranilate synthase component I, N terminal region XAV_17255 PF00311 Phosphoenolpyruvate carboxylase XAV_17265 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XAV_17265 PF05221 S-adenosyl-L-homocysteine hydrolase XAV_17270 PF13649 Methyltransferase domain XAV_17280 PF00685 Sulfotransferase domain XAV_17300 PF00128 Alpha amylase, catalytic domain XAV_17305 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XAV_17325 PF02219 Methylenetetrahydrofolate reductase XAV_17335 PF00293 NUDIX domain XAV_17340 PF02810 SEC-C motif XAV_17340 PF07517 SecA DEAD-like domain XAV_17340 PF01043 SecA preprotein cross-linking domain XAV_17340 PF07516 SecA Wing and Scaffold domain XAV_17345 PF01476 LysM domain XAV_17345 PF08525 Opacity-associated protein A N-terminal motif XAV_17345 PF01551 Peptidase family M23 XAV_17355 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase XAV_17360 PF00091 Tubulin/FtsZ family, GTPase domain XAV_17360 PF12327 FtsZ family, C-terminal domain XAV_17365 PF02491 SHS2 domain inserted in FTSA XAV_17370 PF08478 POTRA domain, FtsQ-type XAV_17370 PF03799 Cell division protein FtsQ XAV_17375 PF01820 D-ala D-ala ligase N-terminus XAV_17375 PF07478 D-ala D-ala ligase C-terminus XAV_17380 PF08245 Mur ligase middle domain XAV_17380 PF01225 Mur ligase family, catalytic domain XAV_17380 PF02875 Mur ligase family, glutamate ligase domain XAV_17385 PF04101 Glycosyltransferase family 28 C-terminal domain XAV_17385 PF03033 Glycosyltransferase family 28 N-terminal domain XAV_17390 PF01098 Cell cycle protein XAV_17395 PF00953 Glycosyl transferase family 4 XAV_17400 PF08245 Mur ligase middle domain XAV_17400 PF02875 Mur ligase family, glutamate ligase domain XAV_17400 PF01225 Mur ligase family, catalytic domain XAV_17405 PF02875 Mur ligase family, glutamate ligase domain XAV_17405 PF01225 Mur ligase family, catalytic domain XAV_17405 PF08245 Mur ligase middle domain XAV_17410 PF00905 Penicillin binding protein transpeptidase domain XAV_17410 PF03717 Penicillin-binding Protein dimerisation domain XAV_17415 PF04999 Cell division protein FtsL XAV_17420 PF01795 MraW methylase family XAV_17425 PF02381 MraZ protein, putative antitoxin-like XAV_17440 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XAV_17445 PF04348 LppC putative lipoprotein XAV_17450 PF02021 Uncharacterised protein family UPF0102 XAV_17455 PF04307 LexA-binding, inner membrane-associated putative hydrolase XAV_17460 PF02913 FAD linked oxidases, C-terminal domain XAV_17460 PF01565 FAD binding domain XAV_17470 PF00072 Response regulator receiver domain XAV_17470 PF00486 Transcriptional regulatory protein, C terminal XAV_17475 PF02702 Osmosensitive K+ channel His kinase sensor domain XAV_17475 PF00512 His Kinase A (phospho-acceptor) domain XAV_17475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_17475 PF13492 GAF domain XAV_17475 PF13493 Domain of unknown function (DUF4118) XAV_17480 PF02669 K+-transporting ATPase, c chain XAV_17490 PF03814 Potassium-transporting ATPase A subunit XAV_17525 PF02769 AIR synthase related protein, C-terminal domain XAV_17525 PF00586 AIR synthase related protein, N-terminal domain XAV_17530 PF01029 NusB family XAV_17535 PF00885 6,7-dimethyl-8-ribityllumazine synthase XAV_17540 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase XAV_17540 PF00925 GTP cyclohydrolase II XAV_17545 PF00677 Lumazine binding domain XAV_17555 PF01872 RibD C-terminal domain XAV_17555 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region XAV_17565 PF03477 ATP cone domain XAV_17570 PF00464 Serine hydroxymethyltransferase XAV_17595 PF00005 ABC transporter XAV_17595 PF12848 ABC transporter XAV_17605 PF00756 Putative esterase XAV_17610 PF04828 Glutathione-dependent formaldehyde-activating enzyme XAV_17615 PF08240 Alcohol dehydrogenase GroES-like domain XAV_17615 PF00107 Zinc-binding dehydrogenase XAV_17620 PF02583 Metal-sensitive transcriptional repressor XAV_17655 PF05598 Transposase domain (DUF772) XAV_17660 PF00266 Aminotransferase class-V XAV_17665 PF01053 Cys/Met metabolism PLP-dependent enzyme XAV_17675 PF07722 Peptidase C26 XAV_17680 PF01810 LysE type translocator XAV_17685 PF04204 Homoserine O-succinyltransferase XAV_17690 PF00120 Glutamine synthetase, catalytic domain XAV_17715 PF00486 Transcriptional regulatory protein, C terminal XAV_17715 PF00072 Response regulator receiver domain XAV_17720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_17720 PF00672 HAMP domain XAV_17720 PF00512 His Kinase A (phospho-acceptor) domain XAV_17745 PF04107 Glutamate-cysteine ligase family 2(GCS2) XAV_17755 PF01926 50S ribosome-binding GTPase XAV_17760 PF00034 Cytochrome c XAV_17770 PF01323 DSBA-like thioredoxin domain XAV_17790 PF12627 Probable RNA and SrmB- binding site of polymerase A XAV_17790 PF01966 HD domain XAV_17790 PF01743 Poly A polymerase head domain XAV_17805 PF14883 Hypothetical glycosyl hydrolase family 13 XAV_17805 PF01522 Polysaccharide deacetylase XAV_17810 PF00535 Glycosyl transferase family 2 XAV_17825 PF01979 Amidohydrolase family XAV_17830 PF01380 SIS domain XAV_17835 PF00356 Bacterial regulatory proteins, lacI family XAV_17840 PF07690 Major Facilitator Superfamily XAV_17845 PF07702 UTRA domain XAV_17845 PF00392 Bacterial regulatory proteins, gntR family XAV_17920 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XAV_17925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_17925 PF00512 His Kinase A (phospho-acceptor) domain XAV_17930 PF00072 Response regulator receiver domain XAV_17935 PF00360 Phytochrome region XAV_17935 PF08446 PAS fold XAV_17935 PF01590 GAF domain XAV_17935 PF00512 His Kinase A (phospho-acceptor) domain XAV_17935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_17940 PF04972 BON domain XAV_17945 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XAV_17945 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XAV_17950 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XAV_17950 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain XAV_17990 PF11818 C-terminal domain of tail specific protease (DUF3340) XAV_17990 PF00595 PDZ domain XAV_17990 PF17804 Tail specific protease N-terminal domain XAV_17990 PF03572 Peptidase family S41 XAV_17995 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family XAV_17995 PF04055 Radical SAM superfamily XAV_18000 PF03099 Biotin/lipoate A/B protein ligase family XAV_18005 PF04359 Protein of unknown function (DUF493) XAV_18015 PF07943 Penicillin-binding protein 5, C-terminal domain XAV_18015 PF00768 D-alanyl-D-alanine carboxypeptidase XAV_18020 PF03330 Lytic transglycolase XAV_18020 PF05036 Sporulation related domain XAV_18025 PF13406 Transglycosylase SLT domain XAV_18030 PF00295 Glycosyl hydrolases family 28 XAV_18035 PF01098 Cell cycle protein XAV_18040 PF03717 Penicillin-binding Protein dimerisation domain XAV_18040 PF00905 Penicillin binding protein transpeptidase domain XAV_18050 PF04085 rod shape-determining protein MreC XAV_18060 PF00294 pfkB family carbohydrate kinase XAV_18075 PF01609 Transposase DDE domain XAV_18075 PF05598 Transposase domain (DUF772) XAV_18090 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XAV_18090 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XAV_18100 PF00483 Nucleotidyl transferase XAV_18105 PF00733 Asparagine synthase XAV_18105 PF13537 Glutamine amidotransferase domain XAV_18115 PF01925 Sulfite exporter TauE/SafE XAV_18150 PF01433 Peptidase family M1 domain XAV_18150 PF11838 ERAP1-like C-terminal domain XAV_18155 PF00563 EAL domain XAV_18155 PF03707 Bacterial signalling protein N terminal repeat XAV_18155 PF00990 Diguanylate cyclase, GGDEF domain XAV_18160 PF01209 ubiE/COQ5 methyltransferase family XAV_18170 PF13533 Biotin-lipoyl like XAV_18175 PF13673 Acetyltransferase (GNAT) domain XAV_18190 PF10431 C-terminal, D2-small domain, of ClpB protein XAV_18190 PF07724 AAA domain (Cdc48 subfamily) XAV_18190 PF00004 ATPase family associated with various cellular activities (AAA) XAV_18195 PF00227 Proteasome subunit XAV_18200 PF02899 Phage integrase, N-terminal SAM-like domain XAV_18200 PF00589 Phage integrase family XAV_18210 PF01678 Diaminopimelate epimerase XAV_18220 PF04304 Protein of unknown function (DUF454) XAV_18225 PF00326 Prolyl oligopeptidase family XAV_18225 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XAV_18230 PF00155 Aminotransferase class I and II XAV_18235 PF00326 Prolyl oligopeptidase family XAV_18235 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XAV_18265 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain XAV_18265 PF03900 Porphobilinogen deaminase, C-terminal domain XAV_18270 PF04397 LytTr DNA-binding domain XAV_18270 PF00072 Response regulator receiver domain XAV_18275 PF06580 Histidine kinase XAV_18275 PF07694 5TMR of 5TMR-LYT XAV_18285 PF13632 Glycosyl transferase family group 2 XAV_18310 PF01740 STAS domain XAV_18310 PF00916 Sulfate permease family XAV_18315 PF00150 Cellulase (glycosyl hydrolase family 5) XAV_18315 PF00553 Cellulose binding domain XAV_18320 PF00672 HAMP domain XAV_18320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XAV_18320 PF02203 Tar ligand binding domain homologue XAV_18325 PF00563 EAL domain XAV_18325 PF00990 Diguanylate cyclase, GGDEF domain XAV_18325 PF03707 Bacterial signalling protein N terminal repeat XAV_18345 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XAV_18345 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XAV_18375 PF01544 CorA-like Mg2+ transporter protein XAV_18385 PF00324 Amino acid permease XAV_18400 PF00553 Cellulose binding domain XAV_18400 PF00041 Fibronectin type III domain XAV_18400 PF01341 Glycosyl hydrolases family 6 XAV_18405 PF01609 Transposase DDE domain XAV_18405 PF05598 Transposase domain (DUF772) XAV_18410 PF03330 Lytic transglycolase XAV_18415 PF00892 EamA-like transporter family XAV_18455 PF07759 Protein of unknown function (DUF1615) XAV_18485 PF13340 Putative transposase of IS4/5 family (DUF4096) XAV_18495 PF00106 short chain dehydrogenase XAV_18525 PF13091 PLD-like domain XAV_18525 PF13087 AAA domain XAV_18565 PF00589 Phage integrase family XAV_18590 PF04542 Sigma-70 region 2 XAV_18590 PF04545 Sigma-70, region 4 XAV_18590 PF03979 Sigma-70 factor, region 1.1 XAV_18590 PF04546 Sigma-70, non-essential region XAV_18590 PF04539 Sigma-70 region 3 XAV_18590 PF00140 Sigma-70 factor, region 1.2 XAV_18595 PF02580 D-Tyr-tRNA(Tyr) deacylase XAV_18600 PF03279 Bacterial lipid A biosynthesis acyltransferase XAV_18610 PF00925 GTP cyclohydrolase II XAV_18630 PF00535 Glycosyl transferase family 2 XAV_18645 PF01029 NusB family XAV_18645 PF01189 16S rRNA methyltransferase RsmB/F XAV_18650 PF00551 Formyl transferase XAV_18650 PF02911 Formyl transferase, C-terminal domain XAV_18655 PF01327 Polypeptide deformylase XAV_18660 PF01476 LysM domain XAV_18665 PF02481 DNA recombination-mediator protein A XAV_18665 PF17782 DprA winged helix domain XAV_18670 PF04361 Protein of unknown function (DUF494) XAV_18690 PF01131 DNA topoisomerase XAV_18690 PF01751 Toprim domain XAV_18690 PF13368 Topoisomerase C-terminal repeat XAV_18695 PF01300 Telomere recombination XAV_18720 PF01343 Peptidase family S49 XAV_18725 PF01554 MatE XAV_18745 PF18319 PriA DNA helicase Cys-rich region (CRR) domain XAV_18745 PF18074 Primosomal protein N C-terminal domain XAV_18745 PF00270 DEAD/DEAH box helicase XAV_18745 PF17764 3′ DNA-binding domain (3′BD) XAV_18745 PF00271 Helicase conserved C-terminal domain XAV_18765 PF07992 Pyridine nucleotide-disulphide oxidoreductase XAV_18775 PF04542 Sigma-70 region 2 XAV_18775 PF04545 Sigma-70, region 4 XAV_18780 PF03167 Uracil DNA glycosylase superfamily XAV_18785 PF00072 Response regulator receiver domain XAV_18785 PF01339 CheB methylesterase XAV_18790 PF18075 FtsX extracellular domain XAV_18795 PF00005 ABC transporter XAV_18800 PF12300 ATP-dependent RNA helicase RhlB XAV_18800 PF00270 DEAD/DEAH box helicase XAV_18800 PF00271 Helicase conserved C-terminal domain XAV_18805 PF00085 Thioredoxin XAV_18810 PF07497 Rho termination factor, RNA-binding domain XAV_18810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XAV_18810 PF07498 Rho termination factor, N-terminal domain XAV_18820 PF03971 Monomeric isocitrate dehydrogenase XAV_18835 PF09704 CRISPR-associated protein (Cas_Cas5) XAV_18855 PF01867 CRISPR associated protein Cas1 XAV_18860 PF09827 CRISPR associated protein Cas2 XAV_18875 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term XAV_18875 PF14489 QueF-like protein XAV_18880 PF07687 Peptidase dimerisation domain XAV_18880 PF01546 Peptidase family M20/M25/M40 XAV_18885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XAV_18890 PF00873 AcrB/AcrD/AcrF family XAV_18895 PF00873 AcrB/AcrD/AcrF family XAV_18900 PF07063 Domain of unknown function (DUF1338) XAV_18945 PF01510 N-acetylmuramoyl-L-alanine amidase XAV_18955 PF13378 Enolase C-terminal domain-like XAV_18955 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XAV_18970 PF13520 Amino acid permease XAV_18985 PF05360 yiaA/B two helix domain XAV_18990 PF07995 Glucose / Sorbosone dehydrogenase XAV_18995 PF01915 Glycosyl hydrolase family 3 C-terminal domain XAV_18995 PF14310 Fibronectin type III-like domain XAV_18995 PF00933 Glycosyl hydrolase family 3 N terminal domain XAV_19000 PF02152 Dihydroneopterin aldolase XAV_19005 PF00814 Glycoprotease family XAV_19010 PF01165 Ribosomal protein S21 XAV_19015 PF09424 Yqey-like protein XAV_19025 PF03631 Virulence factor BrkB XAV_19030 PF08275 DNA primase catalytic core, N-terminal domain XAV_19030 PF08278 DNA primase DnaG DnaB-binding XAV_19030 PF10410 DnaB-helicase binding domain of primase XAV_19030 PF01807 CHC2 zinc finger XAV_19035 PF13593 SBF-like CPA transporter family (DUF4137) XAV_19045 PF01040 UbiA prenyltransferase family XAV_19070 PF00510 Cytochrome c oxidase subunit III XAV_19075 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 XAV_19085 PF00115 Cytochrome C and Quinol oxidase polypeptide I XAV_19090 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XAV_19090 PF02790 Cytochrome C oxidase subunit II, transmembrane domain XAV_19105 PF01619 Proline dehydrogenase XAV_19105 PF18327 Proline utilization A proline dehydrogenase N-terminal domain XAV_19105 PF00171 Aldehyde dehydrogenase family XAV_19105 PF14850 DNA-binding domain of Proline dehydrogenase XAV_19140 PF00579 tRNA synthetases class I (W and Y) XAV_19145 PF04225 Opacity-associated protein A LysM-like domain XAV_19145 PF01551 Peptidase family M23 XAV_19150 PF03702 Anhydro-N-acetylmuramic acid kinase XAV_19160 PF07690 Major Facilitator Superfamily XAV_19165 PF03372 Endonuclease/Exonuclease/phosphatase family XAV_19170 PF00156 Phosphoribosyl transferase domain XAV_19180 PF13614 AAA domain XAV_19185 PF17762 HTH domain found in ParB protein XAV_19185 PF02195 ParB-like nuclease domain XAV_19195 PF01370 NAD dependent epimerase/dehydratase family XAV_19205 PF00535 Glycosyl transferase family 2 XAV_19220 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XAV_19220 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XAV_19220 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XAV_19220 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XAV_19225 PF00692 dUTPase XAV_19230 PF02441 Flavoprotein XAV_19230 PF04127 DNA / pantothenate metabolism flavoprotein XAV_19235 PF04002 RadC-like JAB domain XAV_19240 PF05746 DALR anticodon binding domain XAV_19240 PF03485 Arginyl tRNA synthetase N terminal domain XAV_19240 PF00750 tRNA synthetases class I (R) XAV_19255 PF00106 short chain dehydrogenase XAV_19260 PF01757 Acyltransferase family XAV_19265 PF03033 Glycosyltransferase family 28 N-terminal domain XAV_19275 PF17944 Arginine decarboxylase C-terminal helical extension XAV_19275 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XAV_19275 PF17810 Arginine decarboxylase helical bundle domain XAV_19280 PF17284 Spermidine synthase tetramerisation domain XAV_19300 PF00754 F5/8 type C domain XAV_19300 PF00041 Fibronectin type III domain XAV_19300 PF02838 Glycosyl hydrolase family 20, domain 2 XAV_19300 PF07555 beta-N-acetylglucosaminidase XAV_19300 PF00963 Cohesin domain XAV_19305 PF00543 Nitrogen regulatory protein P-II XAV_19310 PF04380 Membrane fusogenic activity XAV_19315 PF01078 Magnesium chelatase, subunit ChlI XAV_19315 PF13335 Magnesium chelatase, subunit ChlI C-terminal XAV_19330 PF00563 EAL domain XAV_19330 PF12792 CSS motif domain associated with EAL XAV_19335 PF00487 Fatty acid desaturase XAV_19340 PF00111 2Fe-2S iron-sulfur cluster binding domain XAV_19340 PF00970 Oxidoreductase FAD-binding domain XAV_19340 PF00175 Oxidoreductase NAD-binding domain XAV_19345 PF00440 Bacterial regulatory proteins, tetR family XAV_19385 PF01370 NAD dependent epimerase/dehydratase family XAV_19385 PF08338 Domain of unknown function (DUF1731) XAV_19395 PF00595 PDZ domain XAV_19415 PF01594 AI-2E family transporter XAV_19420 PF13419 Haloacid dehalogenase-like hydrolase XAV_19425 PF02789 Cytosol aminopeptidase family, N-terminal domain XAV_19425 PF00883 Cytosol aminopeptidase family, catalytic domain XAV_19440 PF00199 Catalase XAV_19465 PF00892 EamA-like transporter family XAV_19490 PF00579 tRNA synthetases class I (W and Y) XAV_19495 PF05532 CsbD-like XAV_19510 PF00491 Arginase family XAV_19535 PF02223 Thymidylate kinase XAV_19550 PF03309 Type III pantothenate kinase XAV_19555 PF03099 Biotin/lipoate A/B protein ligase family XAV_19555 PF02237 Biotin protein ligase C terminal domain XAV_19555 PF08279 HTH domain XAV_19565 PF06167 Glucose-regulated metallo-peptidase M90 XAV_19580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_19580 PF00512 His Kinase A (phospho-acceptor) domain XAV_19580 PF00672 HAMP domain XAV_19585 PF00486 Transcriptional regulatory protein, C terminal XAV_19585 PF00072 Response regulator receiver domain XAV_19595 PF01207 Dihydrouridine synthase (Dus) XAV_19610 PF00199 Catalase XAV_19610 PF06628 Catalase-related immune-responsive XAV_19615 PF13307 Helicase C-terminal domain XAV_19615 PF06733 DEAD_2 XAV_19630 PF08501 Shikimate dehydrogenase substrate binding domain XAV_19630 PF18317 Shikimate 5'-dehydrogenase C-terminal domain XAV_19630 PF01488 Shikimate / quinate 5-dehydrogenase XAV_19640 PF00258 Flavodoxin XAV_19640 PF00175 Oxidoreductase NAD-binding domain XAV_19640 PF00667 FAD binding domain XAV_19650 PF00490 Delta-aminolevulinic acid dehydratase XAV_19675 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XAV_19675 PF00326 Prolyl oligopeptidase family XAV_19705 PF04820 Tryptophan halogenase XAV_19720 PF00005 ABC transporter XAV_19730 PF01381 Helix-turn-helix XAV_19740 PF02583 Metal-sensitive transcriptional repressor XAV_19745 PF01545 Cation efflux family XAV_19750 PF00970 Oxidoreductase FAD-binding domain XAV_19750 PF00111 2Fe-2S iron-sulfur cluster binding domain XAV_19750 PF00175 Oxidoreductase NAD-binding domain XAV_19755 PF00005 ABC transporter XAV_19760 PF01061 ABC-2 type transporter XAV_19805 PF00268 Ribonucleotide reductase, small chain XAV_19810 PF00317 Ribonucleotide reductase, all-alpha domain XAV_19810 PF02867 Ribonucleotide reductase, barrel domain XAV_19810 PF03477 ATP cone domain XAV_19825 PF13380 CoA binding domain XAV_19825 PF13607 Succinyl-CoA ligase like flavodoxin domain XAV_19825 PF00583 Acetyltransferase (GNAT) family XAV_19835 PF00571 CBS domain XAV_19835 PF01769 Divalent cation transporter XAV_19835 PF03448 MgtE intracellular N domain XAV_19840 PF00194 Eukaryotic-type carbonic anhydrase XAV_19845 PF02254 TrkA-N domain XAV_19845 PF00999 Sodium/hydrogen exchanger family XAV_19850 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XAV_19850 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XAV_19855 PF00723 Glycosyl hydrolases family 15 XAV_19870 PF05166 YcgL domain XAV_19875 PF00109 Beta-ketoacyl synthase, N-terminal domain XAV_19875 PF02801 Beta-ketoacyl synthase, C-terminal domain XAV_19885 PF00535 Glycosyl transferase family 2 XAV_19925 PF07977 FabA-like domain XAV_19930 PF01553 Acyltransferase XAV_19940 PF00550 Phosphopantetheine attachment site XAV_19945 PF04820 Tryptophan halogenase XAV_19980 PF01218 Coproporphyrinogen III oxidase XAV_19990 PF00476 DNA polymerase family A XAV_19990 PF01612 3'-5' exonuclease XAV_19990 PF01367 5'-3' exonuclease, C-terminal SAM fold XAV_19990 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XAV_20020 PF01425 Amidase XAV_20035 PF01546 Peptidase family M20/M25/M40 XAV_20035 PF07687 Peptidase dimerisation domain XAV_20040 PF00266 Aminotransferase class-V XAV_20055 PF09349 OHCU decarboxylase XAV_20055 PF01014 Uricase XAV_20060 PF13454 FAD-NAD(P)-binding XAV_20065 PF00576 HIUase/Transthyretin family XAV_20070 PF07308 Protein of unknown function (DUF1456) XAV_20080 PF08482 ATP-dependent helicase C-terminal XAV_20080 PF00271 Helicase conserved C-terminal domain XAV_20080 PF04408 Helicase associated domain (HA2) XAV_20080 PF00270 DEAD/DEAH box helicase XAV_20090 PF00849 RNA pseudouridylate synthase XAV_20100 PF00248 Aldo/keto reductase family XAV_20105 PF16884 N-terminal domain of oxidoreductase XAV_20105 PF00107 Zinc-binding dehydrogenase XAV_20110 PF00248 Aldo/keto reductase family XAV_20135 PF02566 OsmC-like protein XAV_20140 PF01047 MarR family XAV_20165 PF01026 TatD related DNase XAV_20170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XAV_20170 PF03466 LysR substrate binding domain XAV_20175 PF00355 Rieske [2Fe-2S] domain XAV_20180 PF00111 2Fe-2S iron-sulfur cluster binding domain XAV_20185 PF00860 Permease family XAV_20200 PF01425 Amidase XAV_20225 PF01609 Transposase DDE domain XAV_20225 PF05598 Transposase domain (DUF772) XAV_20235 PF03969 AFG1-like ATPase XAV_20255 PF07683 Cobalamin synthesis protein cobW C-terminal domain XAV_20255 PF02492 CobW/HypB/UreG, nucleotide-binding domain XAV_20310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XAV_20310 PF02770 Acyl-CoA dehydrogenase, middle domain XAV_20310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XAV_20315 PF01039 Carboxyl transferase domain XAV_20320 PF00289 Biotin carboxylase, N-terminal domain XAV_20320 PF18140 Propionyl-coenzyme A carboxylase BT domain XAV_20320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XAV_20320 PF02785 Biotin carboxylase C-terminal domain XAV_20320 PF00364 Biotin-requiring enzyme XAV_20325 PF00326 Prolyl oligopeptidase family XAV_20365 PF12706 Beta-lactamase superfamily domain XAV_20375 PF01432 Peptidase family M3 XAV_20390 PF00472 RF-1 domain XAV_20400 PF00849 RNA pseudouridylate synthase XAV_20410 PF03109 ABC1 family XAV_20420 PF07478 D-ala D-ala ligase C-terminus XAV_20420 PF01820 D-ala D-ala ligase N-terminus XAV_20435 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XAV_20445 PF00501 AMP-binding enzyme XAV_20450 PF03692 Putative zinc- or iron-chelating domain XAV_20455 PF00561 alpha/beta hydrolase fold XAV_20465 PF01555 DNA methylase XAV_20470 PF02661 Fic/DOC family XAV_20470 PF13784 Fic/DOC family N-terminal XAV_20475 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XAV_20475 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XAV_20490 PF00588 SpoU rRNA Methylase family XAV_20495 PF07690 Major Facilitator Superfamily XAV_20510 PF02954 Bacterial regulatory protein, Fis family XAV_20510 PF00072 Response regulator receiver domain XAV_20510 PF00158 Sigma-54 interaction domain XAV_20515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_20515 PF00512 His Kinase A (phospho-acceptor) domain XAV_20520 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XAV_20520 PF00205 Thiamine pyrophosphate enzyme, central domain XAV_20520 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XAV_20535 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XAV_20535 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus XAV_20540 PF02556 Preprotein translocase subunit SecB XAV_20545 PF00581 Rhodanese-like domain XAV_20580 PF00108 Thiolase, N-terminal domain XAV_20580 PF02803 Thiolase, C-terminal domain XAV_20600 PF00080 Copper/zinc superoxide dismutase (SODC) XAV_20605 PF00080 Copper/zinc superoxide dismutase (SODC) XAV_20610 PF00158 Sigma-54 interaction domain XAV_20610 PF02954 Bacterial regulatory protein, Fis family XAV_20610 PF00072 Response regulator receiver domain XAV_20615 PF00989 PAS fold XAV_20615 PF00512 His Kinase A (phospho-acceptor) domain XAV_20615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_20620 PF00909 Ammonium Transporter Family XAV_20625 PF00543 Nitrogen regulatory protein P-II XAV_20630 PF00120 Glutamine synthetase, catalytic domain XAV_20630 PF03951 Glutamine synthetase, beta-Grasp domain XAV_20635 PF02673 Bacitracin resistance protein BacA XAV_20675 PF03061 Thioesterase superfamily XAV_20680 PF13091 PLD-like domain XAV_20695 PF10609 NUBPL iron-transfer P-loop NTPase XAV_20695 PF01883 Iron-sulfur cluster assembly protein XAV_20720 PF10017 Histidine-specific methyltransferase, SAM-dependent XAV_20725 PF12867 DinB superfamily XAV_20725 PF03781 Sulfatase-modifying factor enzyme 1 XAV_20735 PF00528 Binding-protein-dependent transport system inner membrane component XAV_20740 PF00571 CBS domain XAV_20740 PF00005 ABC transporter XAV_20755 PF00005 ABC transporter XAV_20790 PF07687 Peptidase dimerisation domain XAV_20790 PF01546 Peptidase family M20/M25/M40 XAV_20795 PF01734 Patatin-like phospholipase XAV_20805 PF01037 Lrp/AsnC ligand binding domain XAV_20810 PF00351 Biopterin-dependent aromatic amino acid hydroxylase XAV_20840 PF00356 Bacterial regulatory proteins, lacI family XAV_20855 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component XAV_20865 PF03480 Bacterial extracellular solute-binding protein, family 7 XAV_20875 PF13472 GDSL-like Lipase/Acylhydrolase family XAV_20875 PF07859 alpha/beta hydrolase fold XAV_20880 PF00135 Carboxylesterase family XAV_20885 PF00248 Aldo/keto reductase family XAV_20895 PF00128 Alpha amylase, catalytic domain XAV_20895 PF02806 Alpha amylase, C-terminal all-beta domain XAV_20895 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XAV_20900 PF16657 Maltogenic Amylase, C-terminal domain XAV_20900 PF00128 Alpha amylase, catalytic domain XAV_20905 PF00128 Alpha amylase, catalytic domain XAV_20905 PF11896 Domain of unknown function (DUF3416) XAV_20945 PF03377 TAL effector repeat XAV_20965 PF00360 Phytochrome region XAV_20965 PF01590 GAF domain XAV_20965 PF00512 His Kinase A (phospho-acceptor) domain XAV_20965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XAV_20965 PF08446 PAS fold XAV_20970 PF04349 Periplasmic glucan biosynthesis protein, MdoG XAV_20990 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XAV_20990 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XAV_20990 PF06827 Zinc finger found in FPG and IleRS XAV_21050 PF03594 Benzoate membrane transport protein XAV_21055 PF13426 PAS domain XAV_21055 PF01590 GAF domain XAV_21055 PF00360 Phytochrome region XAV_21055 PF08446 PAS fold XAV_21060 PF01126 Heme oxygenase XAV_21065 PF07690 Major Facilitator Superfamily XAV_21070 PF01263 Aldose 1-epimerase XAV_21080 PF02810 SEC-C motif XAV_21085 PF01925 Sulfite exporter TauE/SafE XAV_21110 PF01227 GTP cyclohydrolase I XAV_21120 PF07869 Protein of unknown function (DUF1656) XAV_21140 PF00083 Sugar (and other) transporter XAV_21250 PF02785 Biotin carboxylase C-terminal domain XAV_21250 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XAV_21250 PF00289 Biotin carboxylase, N-terminal domain XAV_21255 PF01425 Amidase XAV_21290 PF13538 UvrD-like helicase C-terminal domain XAV_21295 PF13361 UvrD-like helicase C-terminal domain XAV_21295 PF00580 UvrD/REP helicase N-terminal domain XAV_21295 PF12705 PD-(D/E)XK nuclease superfamily XAV_21300 PF17946 RecC C-terminal domain XAV_21305 PF00005 ABC transporter XAV_21325 PF13533 Biotin-lipoyl like XAV_21330 PF00005 ABC transporter XAV_21345 PF00005 ABC transporter XAV_21350 PF02405 Permease MlaE XAV_21355 PF02470 MlaD protein XAV_21360 PF05494 MlaC protein XAV_21370 PF04333 MlaA lipoprotein XAV_21390 PF00255 Glutathione peroxidase XAV_21400 PF02646 RmuC family XAV_21430 PF13520 Amino acid permease XAV_21465 PF17785 PUA-like domain XAV_21465 PF10672 S-adenosylmethionine-dependent methyltransferase XAV_21470 PF03741 Integral membrane protein TerC family XAV_21480 PF03009 Glycerophosphoryl diester phosphodiesterase family XAV_21490 PF01569 PAP2 superfamily XAV_21495 PF01926 50S ribosome-binding GTPase XAV_21495 PF12631 MnmE helical domain XAV_21495 PF10396 GTP-binding protein TrmE N-terminus XAV_21510 PF02096 60Kd inner membrane protein XAV_21510 PF14849 YidC periplasmic domain XAV_21515 PF00825 Ribonuclease P XAV_21520 PF00468 Ribosomal protein L34 XAV_21550 PF03432 Relaxase/Mobilisation nuclease domain XAV_21600 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin XAV_21605 PF00239 Resolvase, N terminal domain XAV_21605 PF02796 Helix-turn-helix domain of resolvase XAV_21610 PF13614 AAA domain XAV_21610 PF00376 MerR family regulatory protein