locus-tag class description XB05_00020 PF00072 Response regulator receiver domain XB05_00020 PF13426 PAS domain XB05_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_00040 PF00182 Chitinase class I XB05_00095 PF01555 DNA methylase XB05_00105 PF11799 impB/mucB/samB family C-terminal domain XB05_00105 PF13438 Domain of unknown function (DUF4113) XB05_00105 PF00817 impB/mucB/samB family XB05_00115 PF00072 Response regulator receiver domain XB05_00115 PF13426 PAS domain XB05_00115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_00125 PF05698 Bacterial trigger factor protein (TF) C-terminus XB05_00125 PF05697 Bacterial trigger factor protein (TF) XB05_00130 PF00574 Clp protease XB05_00135 PF06689 ClpX C4-type zinc finger XB05_00135 PF07724 AAA domain (Cdc48 subfamily) XB05_00135 PF10431 C-terminal, D2-small domain, of ClpB protein XB05_00140 PF05362 Lon protease (S16) C-terminal proteolytic domain XB05_00140 PF00004 ATPase family associated with various cellular activities (AAA) XB05_00140 PF02190 ATP-dependent protease La (LON) substrate-binding domain XB05_00145 PF00216 Bacterial DNA-binding protein XB05_00170 PF01476 LysM domain XB05_00170 PF05257 CHAP domain XB05_00175 PF16123 Hydroxyacylglutathione hydrolase C-terminus XB05_00175 PF00753 Metallo-beta-lactamase superfamily XB05_00185 PF00075 RNase H XB05_00190 PF00929 Exonuclease XB05_00210 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XB05_00220 PF12706 Beta-lactamase superfamily domain XB05_00220 PF00753 Metallo-beta-lactamase superfamily XB05_00225 PF06463 Molybdenum Cofactor Synthesis C XB05_00225 PF04055 Radical SAM superfamily XB05_00230 PF01967 MoaC family XB05_00235 PF02597 ThiS family XB05_00240 PF02391 MoaE protein XB05_00250 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding XB05_00250 PF12170 DNA polymerase III tau subunit V interacting with alpha XB05_00250 PF12169 DNA polymerase III subunits gamma and tau domain III XB05_00255 PF02575 YbaB/EbfC DNA-binding family XB05_00260 PF13662 Toprim domain XB05_00260 PF02132 RecR protein XB05_00265 PF01230 HIT domain XB05_00275 PF11992 Domain of unknown function (DUF3488) XB05_00275 PF13559 Domain of unknown function (DUF4129) XB05_00275 PF01841 Transglutaminase-like superfamily XB05_00285 PF17863 AAA lid domain XB05_00285 PF07726 ATPase family associated with various cellular activities (AAA) XB05_00305 PF02545 Maf-like protein XB05_00310 PF02620 Large ribosomal RNA subunit accumulation protein YceD XB05_00315 PF01783 Ribosomal L32p protein family XB05_00320 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XB05_00320 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XB05_00330 PF00698 Acyl transferase domain XB05_00340 PF00550 Phosphopantetheine attachment site XB05_00345 PF02801 Beta-ketoacyl synthase, C-terminal domain XB05_00345 PF00109 Beta-ketoacyl synthase, N-terminal domain XB05_00350 PF00425 chorismate binding enzyme XB05_00350 PF04715 Anthranilate synthase component I, N terminal region XB05_00355 PF02618 YceG-like family XB05_00360 PF09115 DNA polymerase III, delta subunit, C terminal XB05_00380 PF00158 Sigma-54 interaction domain XB05_00380 PF02954 Bacterial regulatory protein, Fis family XB05_00380 PF06506 Propionate catabolism activator XB05_00390 PF00285 Citrate synthase, C-terminal domain XB05_00395 PF00330 Aconitase family (aconitate hydratase) XB05_00395 PF00694 Aconitase C-terminal domain XB05_00400 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH XB05_00410 PF04303 PrpF protein XB05_00415 PF00593 TonB dependent receptor XB05_00415 PF07715 TonB-dependent Receptor Plug Domain XB05_00425 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain XB05_00425 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain XB05_00425 PF11974 Bacterial alpha-2-macroglobulin MG3 domain XB05_00425 PF07703 Alpha-2-macroglobulin bait region domain XB05_00425 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain XB05_00425 PF01835 MG2 domain XB05_00425 PF00207 Alpha-2-macroglobulin family XB05_00425 PF17962 Bacterial macroglobulin domain 6 XB05_00445 PF06832 Penicillin-Binding Protein C-terminus Family XB05_00445 PF00912 Transglycosylase XB05_00445 PF00905 Penicillin binding protein transpeptidase domain XB05_00455 PF08534 Redoxin XB05_00465 PF01556 DnaJ C terminal domain XB05_00465 PF00226 DnaJ domain XB05_00470 PF00072 Response regulator receiver domain XB05_00475 PF01145 SPFH domain / Band 7 family XB05_00475 PF12221 Bacterial membrane protein N terminal XB05_00480 PF01145 SPFH domain / Band 7 family XB05_00495 PF00709 Adenylosuccinate synthetase XB05_00520 PF00440 Bacterial regulatory proteins, tetR family XB05_00530 PF08463 EcoEI R protein C-terminal XB05_00530 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) XB05_00530 PF04851 Type III restriction enzyme, res subunit XB05_00530 PF00271 Helicase conserved C-terminal domain XB05_00545 PF12161 HsdM N-terminal domain XB05_00545 PF02384 N-6 DNA Methylase XB05_00575 PF00440 Bacterial regulatory proteins, tetR family XB05_00575 PF13977 BetI-type transcriptional repressor, C-terminal XB05_00580 PF00300 Histidine phosphatase superfamily (branch 1) XB05_00580 PF13456 Reverse transcriptase-like XB05_00585 PF01256 Carbohydrate kinase XB05_00605 PF00723 Glycosyl hydrolases family 15 XB05_00620 PF07971 Glycosyl hydrolase family 92 XB05_00620 PF17678 Glycosyl hydrolase family 92 N-terminal domain XB05_00630 PF07992 Pyridine nucleotide-disulphide oxidoreductase XB05_00650 PF17755 UvrA DNA-binding domain XB05_00655 PF14310 Fibronectin type III-like domain XB05_00655 PF00933 Glycosyl hydrolase family 3 N terminal domain XB05_00655 PF01915 Glycosyl hydrolase family 3 C-terminal domain XB05_00660 PF04239 Protein of unknown function (DUF421) XB05_00675 PF07690 Major Facilitator Superfamily XB05_00680 PF05426 Alginate lyase XB05_00680 PF07940 Heparinase II/III-like protein XB05_00685 PF14592 Chondroitinase B XB05_00695 PF00392 Bacterial regulatory proteins, gntR family XB05_00695 PF07729 FCD domain XB05_00700 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XB05_00700 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XB05_00705 PF03450 CO dehydrogenase flavoprotein C-terminal domain XB05_00705 PF00941 FAD binding domain in molybdopterin dehydrogenase XB05_00710 PF00111 2Fe-2S iron-sulfur cluster binding domain XB05_00710 PF10518 TAT (twin-arginine translocation) pathway signal sequence XB05_00710 PF01799 [2Fe-2S] binding domain XB05_00715 PF04542 Sigma-70 region 2 XB05_00715 PF08281 Sigma-70, region 4 XB05_00730 PF00328 Histidine phosphatase superfamily (branch 2) XB05_00750 PF00717 Peptidase S24-like XB05_00750 PF01726 LexA DNA binding domain XB05_00765 PF02811 PHP domain XB05_00765 PF14579 Helix-hairpin-helix motif XB05_00765 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XB05_00765 PF07733 Bacterial DNA polymerase III alpha NTPase domain XB05_00770 PF00326 Prolyl oligopeptidase family XB05_00780 PF03169 OPT oligopeptide transporter protein XB05_00790 PF01011 PQQ enzyme repeat XB05_00795 PF04966 Carbohydrate-selective porin, OprB family XB05_00800 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XB05_00800 PF00326 Prolyl oligopeptidase family XB05_00800 PF07676 WD40-like Beta Propeller Repeat XB05_00815 PF12833 Helix-turn-helix domain XB05_00815 PF02311 AraC-like ligand binding domain XB05_00820 PF06628 Catalase-related immune-responsive XB05_00820 PF00199 Catalase XB05_00820 PF18011 C-terminal domain found in long catalases XB05_00825 PF00248 Aldo/keto reductase family XB05_00830 PF00135 Carboxylesterase family XB05_00835 PF02347 Glycine cleavage system P-protein XB05_00840 PF07690 Major Facilitator Superfamily XB05_00860 PF00884 Sulfatase XB05_00860 PF08019 Phosphoethanolamine transferase EptA/EptB XB05_00870 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase XB05_00875 PF00072 Response regulator receiver domain XB05_00875 PF00486 Transcriptional regulatory protein, C terminal XB05_00880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_00880 PF00512 His Kinase A (phospho-acceptor) domain XB05_00890 PF03776 Septum formation topological specificity factor MinE XB05_00895 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XB05_00900 PF03775 Septum formation inhibitor MinC, C-terminal domain XB05_00900 PF05209 Septum formation inhibitor MinC, N-terminal domain XB05_00910 PF07730 Histidine kinase XB05_00915 PF00072 Response regulator receiver domain XB05_00915 PF00196 Bacterial regulatory proteins, luxR family XB05_00930 PF00730 HhH-GPD superfamily base excision DNA repair protein XB05_00955 PF02222 ATP-grasp domain XB05_00955 PF01370 NAD dependent epimerase/dehydratase family XB05_00965 PF04377 Arginine-tRNA-protein transferase, C terminus XB05_00965 PF04376 Arginine-tRNA-protein transferase, N terminus XB05_00975 PF08281 Sigma-70, region 4 XB05_00975 PF04542 Sigma-70 region 2 XB05_00990 PF00378 Enoyl-CoA hydratase/isomerase XB05_01005 PF17755 UvrA DNA-binding domain XB05_01005 PF17760 UvrA interaction domain XB05_01005 PF00005 ABC transporter XB05_01010 PF00829 Ribosomal prokaryotic L21 protein XB05_01015 PF01016 Ribosomal L27 protein XB05_01020 PF01018 GTP1/OBG XB05_01020 PF01926 50S ribosome-binding GTPase XB05_01025 PF01649 Ribosomal protein S20 XB05_01030 PF03023 Lipid II flippase MurJ XB05_01035 PF01687 Riboflavin kinase XB05_01035 PF06574 FAD synthetase XB05_01040 PF00133 tRNA synthetases class I (I, L, M and V) XB05_01040 PF08264 Anticodon-binding domain of tRNA XB05_01040 PF06827 Zinc finger found in FPG and IleRS XB05_01045 PF01252 Signal peptidase (SPase) II XB05_01050 PF02401 LytB protein XB05_01060 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XB05_01060 PF06481 COX Aromatic Rich Motif XB05_01065 PF00115 Cytochrome C and Quinol oxidase polypeptide I XB05_01070 PF00510 Cytochrome c oxidase subunit III XB05_01075 PF03626 Prokaryotic Cytochrome C oxidase subunit IV XB05_01085 PF18073 Rubredoxin metal binding domain XB05_01090 PF05656 Protein of unknown function (DUF805) XB05_01100 PF12833 Helix-turn-helix domain XB05_01105 PF00183 Hsp90 protein XB05_01105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_01115 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XB05_01120 PF08678 Rsbr N terminal XB05_01120 PF01740 STAS domain XB05_01125 PF01740 STAS domain XB05_01130 PF13581 Histidine kinase-like ATPase domain XB05_01140 PF00072 Response regulator receiver domain XB05_01140 PF01627 Hpt domain XB05_01140 PF00512 His Kinase A (phospho-acceptor) domain XB05_01140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_01140 PF00672 HAMP domain XB05_01140 PF17149 Periplasmic sensor domain found in signal transduction proteins XB05_01145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_01145 PF08448 PAS fold XB05_01145 PF13188 PAS domain XB05_01145 PF00072 Response regulator receiver domain XB05_01145 PF00512 His Kinase A (phospho-acceptor) domain XB05_01150 PF04616 Glycosyl hydrolases family 43 XB05_01150 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XB05_01155 PF00593 TonB dependent receptor XB05_01155 PF07715 TonB-dependent Receptor Plug Domain XB05_01160 PF00085 Thioredoxin XB05_01165 PF07237 Protein of unknown function (DUF1428) XB05_01170 PF13493 Domain of unknown function (DUF4118) XB05_01170 PF00512 His Kinase A (phospho-acceptor) domain XB05_01170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_01170 PF13492 GAF domain XB05_01170 PF02702 Osmosensitive K+ channel His kinase sensor domain XB05_01175 PF01339 CheB methylesterase XB05_01180 PF03705 CheR methyltransferase, all-alpha domain XB05_01180 PF01739 CheR methyltransferase, SAM binding domain XB05_01185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_01185 PF00512 His Kinase A (phospho-acceptor) domain XB05_01185 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XB05_01185 PF01627 Hpt domain XB05_01185 PF00672 HAMP domain XB05_01185 PF00072 Response regulator receiver domain XB05_01190 PF00072 Response regulator receiver domain XB05_01190 PF13426 PAS domain XB05_01190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_01195 PF00072 Response regulator receiver domain XB05_01215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_01215 PF03466 LysR substrate binding domain XB05_01225 PF06964 Alpha-L-arabinofuranosidase C-terminal domain XB05_01230 PF01263 Aldose 1-epimerase XB05_01235 PF01578 Cytochrome C assembly protein XB05_01240 PF00448 SRP54-type protein, GTPase domain XB05_01240 PF02881 SRP54-type protein, helical bundle domain XB05_01240 PF02978 Signal peptide binding domain XB05_01245 PF03060 Nitronate monooxygenase XB05_01255 PF00886 Ribosomal protein S16 XB05_01260 PF05239 PRC-barrel domain XB05_01260 PF01782 RimM N-terminal domain XB05_01265 PF01746 tRNA (Guanine-1)-methyltransferase XB05_01270 PF01245 Ribosomal protein L19 XB05_01275 PF01554 MatE XB05_01280 PF01479 S4 domain XB05_01285 PF00141 Peroxidase XB05_01295 PF05192 MutS domain III XB05_01295 PF05188 MutS domain II XB05_01295 PF00488 MutS domain V XB05_01295 PF05190 MutS family domain IV XB05_01295 PF01624 MutS domain I XB05_01345 PF00092 von Willebrand factor type A domain XB05_01410 PF04002 RadC-like JAB domain XB05_01475 PF02837 Glycosyl hydrolases family 2, sugar binding domain XB05_01475 PF16355 Domain of unknown function (DUF4982) XB05_01475 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XB05_01475 PF00703 Glycosyl hydrolases family 2 XB05_01475 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XB05_01480 PF07745 Glycosyl hydrolase family 53 XB05_01490 PF09856 Predicted transcriptional regulator (DUF2083) XB05_01490 PF01381 Helix-turn-helix XB05_01490 PF06114 IrrE N-terminal-like domain XB05_01495 PF00171 Aldehyde dehydrogenase family XB05_01500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XB05_01500 PF02770 Acyl-CoA dehydrogenase, middle domain XB05_01500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XB05_01505 PF00378 Enoyl-CoA hydratase/isomerase XB05_01510 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XB05_01510 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XB05_01510 PF00378 Enoyl-CoA hydratase/isomerase XB05_01515 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XB05_01515 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XB05_01520 PF01545 Cation efflux family XB05_01540 PF13181 Tetratricopeptide repeat XB05_01545 PF07715 TonB-dependent Receptor Plug Domain XB05_01545 PF00593 TonB dependent receptor XB05_01550 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XB05_01550 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XB05_01550 PF00378 Enoyl-CoA hydratase/isomerase XB05_01555 PF08281 Sigma-70, region 4 XB05_01555 PF04542 Sigma-70 region 2 XB05_01565 PF13180 PDZ domain XB05_01570 PF00679 Elongation factor G C-terminus XB05_01570 PF00009 Elongation factor Tu GTP binding domain XB05_01570 PF06421 GTP-binding protein LepA C-terminus XB05_01570 PF03144 Elongation factor Tu domain 2 XB05_01575 PF10502 Signal peptidase, peptidase S26 XB05_01585 PF00035 Double-stranded RNA binding motif XB05_01585 PF14622 Ribonuclease-III-like XB05_01590 PF07650 KH domain XB05_01590 PF01926 50S ribosome-binding GTPase XB05_01595 PF11967 Recombination protein O N terminal XB05_01595 PF02565 Recombination protein O C terminal XB05_01605 PF05958 tRNA (Uracil-5-)-methyltransferase XB05_01615 PF01323 DSBA-like thioredoxin domain XB05_01620 PF01593 Flavin containing amine oxidoreductase XB05_01625 PF04244 Deoxyribodipyrimidine photo-lyase-related protein XB05_01630 PF00933 Glycosyl hydrolase family 3 N terminal domain XB05_01640 PF01048 Phosphorylase superfamily XB05_01645 PF00313 'Cold-shock' DNA-binding domain XB05_01650 PF01494 FAD binding domain XB05_01660 PF00270 DEAD/DEAH box helicase XB05_01660 PF08494 DEAD/H associated XB05_01660 PF00271 Helicase conserved C-terminal domain XB05_01665 PF04679 ATP dependent DNA ligase C terminal region XB05_01665 PF01068 ATP dependent DNA ligase domain XB05_01665 PF04675 DNA ligase N terminus XB05_01675 PF04679 ATP dependent DNA ligase C terminal region XB05_01675 PF01068 ATP dependent DNA ligase domain XB05_01675 PF04675 DNA ligase N terminus XB05_01690 PF00072 Response regulator receiver domain XB05_01690 PF00990 Diguanylate cyclase, GGDEF domain XB05_01705 PF00108 Thiolase, N-terminal domain XB05_01705 PF02803 Thiolase, C-terminal domain XB05_01710 PF03797 Autotransporter beta-domain XB05_01710 PF00082 Subtilase family XB05_01710 PF12951 Passenger-associated-transport-repeat XB05_01715 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XB05_01715 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain XB05_01725 PF01863 Protein of unknown function DUF45 XB05_01730 PF07043 Protein of unknown function (DUF1328) XB05_01740 PF01258 Prokaryotic dksA/traR C4-type zinc finger XB05_01750 PF04542 Sigma-70 region 2 XB05_01750 PF08281 Sigma-70, region 4 XB05_01775 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XB05_01785 PF08274 PhnA Zinc-Ribbon XB05_01785 PF03831 PhnA domain XB05_01800 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XB05_01805 PF07690 Major Facilitator Superfamily XB05_01835 PF03706 Lysylphosphatidylglycerol synthase TM region XB05_01835 PF09924 Uncharacterised conserved protein (DUF2156) XB05_01845 PF01042 Endoribonuclease L-PSP XB05_01890 PF04545 Sigma-70, region 4 XB05_01890 PF04542 Sigma-70 region 2 XB05_01905 PF04060 Putative Fe-S cluster XB05_01915 PF01588 Putative tRNA binding domain XB05_01915 PF09334 tRNA synthetases class I (M) XB05_01930 PF13732 Domain of unknown function (DUF4162) XB05_01930 PF00005 ABC transporter XB05_01935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XB05_01940 PF00324 Amino acid permease XB05_01945 PF02574 Homocysteine S-methyltransferase XB05_01960 PF01810 LysE type translocator XB05_01965 PF02592 Putative vitamin uptake transporter XB05_01985 PF03551 Transcriptional regulator PadR-like family XB05_02015 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit XB05_02020 PF01336 OB-fold nucleic acid binding domain XB05_02020 PF02811 PHP domain XB05_02020 PF14579 Helix-hairpin-helix motif XB05_02020 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XB05_02020 PF07733 Bacterial DNA polymerase III alpha NTPase domain XB05_02025 PF01351 Ribonuclease HII XB05_02030 PF02684 Lipid-A-disaccharide synthetase XB05_02035 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 XB05_02035 PF00132 Bacterial transferase hexapeptide (six repeats) XB05_02040 PF07977 FabA-like domain XB05_02045 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD XB05_02045 PF00132 Bacterial transferase hexapeptide (six repeats) XB05_02055 PF01103 Surface antigen XB05_02055 PF07244 Surface antigen variable number repeat XB05_02060 PF02163 Peptidase family M50 XB05_02060 PF17820 PDZ domain XB05_02065 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase XB05_02065 PF13288 DXP reductoisomerase C-terminal domain XB05_02065 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain XB05_02075 PF01255 Putative undecaprenyl diphosphate synthase XB05_02080 PF01765 Ribosome recycling factor XB05_02085 PF00696 Amino acid kinase family XB05_02090 PF00072 Response regulator receiver domain XB05_02090 PF00990 Diguanylate cyclase, GGDEF domain XB05_02095 PF00889 Elongation factor TS XB05_02100 PF00318 Ribosomal protein S2 XB05_02130 PF05229 Spore Coat Protein U domain XB05_02135 PF00557 Metallopeptidase family M24 XB05_02140 PF08335 GlnD PII-uridylyltransferase XB05_02140 PF01966 HD domain XB05_02140 PF01909 Nucleotidyltransferase domain XB05_02145 PF14602 Hexapeptide repeat of succinyl-transferase XB05_02145 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal XB05_02145 PF00132 Bacterial transferase hexapeptide (six repeats) XB05_02155 PF03960 ArsC family XB05_02160 PF07687 Peptidase dimerisation domain XB05_02160 PF01546 Peptidase family M20/M25/M40 XB05_02165 PF13537 Glutamine amidotransferase domain XB05_02165 PF00733 Asparagine synthase XB05_02175 PF07715 TonB-dependent Receptor Plug Domain XB05_02175 PF00593 TonB dependent receptor XB05_02180 PF01804 Penicillin amidase XB05_02185 PF00210 Ferritin-like domain XB05_02190 PF05724 Thiopurine S-methyltransferase (TPMT) XB05_02195 PF00521 DNA gyrase/topoisomerase IV, subunit A XB05_02195 PF03989 DNA gyrase C-terminal domain, beta-propeller XB05_02210 PF02321 Outer membrane efflux protein XB05_02215 PF00529 HlyD membrane-fusion protein of T1SS XB05_02215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XB05_02220 PF07690 Major Facilitator Superfamily XB05_02240 PF00933 Glycosyl hydrolase family 3 N terminal domain XB05_02240 PF01915 Glycosyl hydrolase family 3 C-terminal domain XB05_02240 PF14310 Fibronectin type III-like domain XB05_02250 PF00854 POT family XB05_02275 PF12802 MarR family XB05_02280 PF01432 Peptidase family M3 XB05_02285 PF00255 Glutathione peroxidase XB05_02290 PF00970 Oxidoreductase FAD-binding domain XB05_02290 PF00175 Oxidoreductase NAD-binding domain XB05_02295 PF00005 ABC transporter XB05_02300 PF05681 Fumarate hydratase (Fumerase) XB05_02300 PF05683 Fumarase C-terminus XB05_02315 PF00484 Carbonic anhydrase XB05_02320 PF02253 Phospholipase A1 XB05_02325 PF04306 Protein of unknown function (DUF456) XB05_02330 PF00313 'Cold-shock' DNA-binding domain XB05_02345 PF00899 ThiF family XB05_02350 PF01026 TatD related DNase XB05_02365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XB05_02365 PF02770 Acyl-CoA dehydrogenase, middle domain XB05_02365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XB05_02375 PF13417 Glutathione S-transferase, N-terminal domain XB05_02380 PF00733 Asparagine synthase XB05_02380 PF13537 Glutamine amidotransferase domain XB05_02385 PF03358 NADPH-dependent FMN reductase XB05_02390 PF03796 DnaB-like helicase C terminal domain XB05_02390 PF00772 DnaB-like helicase N terminal domain XB05_02395 PF03441 FAD binding domain of DNA photolyase XB05_02395 PF00875 DNA photolyase XB05_02400 PF05736 OprF membrane domain XB05_02400 PF00691 OmpA family XB05_02410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_02410 PF03466 LysR substrate binding domain XB05_02420 PF00529 HlyD membrane-fusion protein of T1SS XB05_02420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XB05_02425 PF00873 AcrB/AcrD/AcrF family XB05_02430 PF00106 short chain dehydrogenase XB05_02435 PF02321 Outer membrane efflux protein XB05_02440 PF00990 Diguanylate cyclase, GGDEF domain XB05_02440 PF08448 PAS fold XB05_02450 PF00990 Diguanylate cyclase, GGDEF domain XB05_02485 PF04002 RadC-like JAB domain XB05_02560 PF02534 Type IV secretory system Conjugative DNA transfer XB05_02590 PF03412 Peptidase C39 family XB05_02590 PF00005 ABC transporter XB05_02590 PF00664 ABC transporter transmembrane region XB05_02595 PF07690 Major Facilitator Superfamily XB05_02600 PF02794 RTX toxin acyltransferase family XB05_02625 PF01527 Transposase XB05_02665 PF00082 Subtilase family XB05_02670 PF01668 SmpB protein XB05_02680 PF03658 RnfH family Ubiquitin XB05_02685 PF04355 SmpA / OmlA family XB05_02690 PF01475 Ferric uptake regulator family XB05_02695 PF02463 RecF/RecN/SMC N terminal domain XB05_02700 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding XB05_02700 PF01628 HrcA protein C terminal domain XB05_02705 PF01025 GrpE XB05_02710 PF00012 Hsp70 protein XB05_02715 PF00226 DnaJ domain XB05_02715 PF01556 DnaJ C terminal domain XB05_02715 PF00684 DnaJ central domain XB05_02720 PF08543 Phosphomethylpyrimidine kinase XB05_02725 PF02153 Prephenate dehydrogenase XB05_02725 PF01817 Chorismate mutase type II XB05_02745 PF00005 ABC transporter XB05_02745 PF03412 Peptidase C39 family XB05_02745 PF00664 ABC transporter transmembrane region XB05_02750 PF03466 LysR substrate binding domain XB05_02750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_02755 PF00664 ABC transporter transmembrane region XB05_02755 PF00005 ABC transporter XB05_02760 PF01205 Uncharacterized protein family UPF0029 XB05_02765 PF03641 Possible lysine decarboxylase XB05_02770 PF07992 Pyridine nucleotide-disulphide oxidoreductase XB05_02770 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XB05_02775 PF02817 e3 binding domain XB05_02775 PF00364 Biotin-requiring enzyme XB05_02775 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XB05_02780 PF16078 2-oxoglutarate dehydrogenase N-terminus XB05_02780 PF00676 Dehydrogenase E1 component XB05_02780 PF16870 2-oxoglutarate dehydrogenase C-terminal XB05_02780 PF02779 Transketolase, pyrimidine binding domain XB05_02790 PF08007 Cupin superfamily protein XB05_02800 PF00206 Lyase XB05_02800 PF08328 Adenylosuccinate lyase C-terminal XB05_02810 PF10415 Fumarase C C-terminus XB05_02810 PF00206 Lyase XB05_02835 PF00005 ABC transporter XB05_02840 PF00392 Bacterial regulatory proteins, gntR family XB05_02850 PF00255 Glutathione peroxidase XB05_02855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XB05_02855 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XB05_02860 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XB05_02860 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XB05_02860 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XB05_02865 PF04102 SlyX XB05_02875 PF01757 Acyltransferase family XB05_02885 PF00356 Bacterial regulatory proteins, lacI family XB05_02890 PF07690 Major Facilitator Superfamily XB05_02895 PF00294 pfkB family carbohydrate kinase XB05_02905 PF02965 Vitamin B12 dependent methionine synthase, activation domain XB05_02905 PF02310 B12 binding domain XB05_02905 PF02607 B12 binding domain XB05_02905 PF00809 Pterin binding enzyme XB05_02905 PF02574 Homocysteine S-methyltransferase XB05_02910 PF02574 Homocysteine S-methyltransferase XB05_02910 PF00809 Pterin binding enzyme XB05_02915 PF01209 ubiE/COQ5 methyltransferase family XB05_02920 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XB05_02920 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XB05_02920 PF02770 Acyl-CoA dehydrogenase, middle domain XB05_02935 PF08206 Ribonuclease B OB domain XB05_02935 PF08461 Ribonuclease R winged-helix domain XB05_02935 PF00575 S1 RNA binding domain XB05_02935 PF00773 RNB domain XB05_02935 PF17876 Cold shock domain XB05_02945 PF08032 RNA 2'-O ribose methyltransferase substrate binding XB05_02945 PF00588 SpoU rRNA Methylase family XB05_02955 PF07694 5TMR of 5TMR-LYT XB05_02955 PF00990 Diguanylate cyclase, GGDEF domain XB05_02960 PF00929 Exonuclease XB05_02970 PF01895 PhoU domain XB05_02975 PF00005 ABC transporter XB05_02980 PF00528 Binding-protein-dependent transport system inner membrane component XB05_02985 PF00528 Binding-protein-dependent transport system inner membrane component XB05_02990 PF12849 PBP superfamily domain XB05_02995 PF12849 PBP superfamily domain XB05_03010 PF00484 Carbonic anhydrase XB05_03015 PF00916 Sulfate permease family XB05_03015 PF01740 STAS domain XB05_03020 PF00730 HhH-GPD superfamily base excision DNA repair protein XB05_03020 PF00633 Helix-hairpin-helix motif XB05_03020 PF10576 Iron-sulfur binding domain of endonuclease III XB05_03030 PF00378 Enoyl-CoA hydratase/isomerase XB05_03035 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XB05_03035 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XB05_03040 PF00293 NUDIX domain XB05_03045 PF00581 Rhodanese-like domain XB05_03080 PF01170 Putative RNA methylase family UPF0020 XB05_03080 PF02926 THUMP domain XB05_03080 PF10672 S-adenosylmethionine-dependent methyltransferase XB05_03085 PF01513 ATP-NAD kinase XB05_03110 PF08411 Exonuclease C-terminal XB05_03110 PF00929 Exonuclease XB05_03115 PF01494 FAD binding domain XB05_03120 PF00266 Aminotransferase class-V XB05_03130 PF06052 3-hydroxyanthranilic acid dioxygenase XB05_03135 PF00484 Carbonic anhydrase XB05_03140 PF04299 Putative FMN-binding domain XB05_03155 PF01336 OB-fold nucleic acid binding domain XB05_03155 PF00152 tRNA synthetases class II (D, K and N) XB05_03160 PF01521 Iron-sulphur cluster biosynthesis XB05_03165 PF01250 Ribosomal protein S6 XB05_03170 PF01084 Ribosomal protein S18 XB05_03175 PF01281 Ribosomal protein L9, N-terminal domain XB05_03175 PF03948 Ribosomal protein L9, C-terminal domain XB05_03180 PF02463 RecF/RecN/SMC N terminal domain XB05_03185 PF04354 ZipA, C-terminal FtsZ-binding domain XB05_03195 PF00155 Aminotransferase class I and II XB05_03200 PF01653 NAD-dependent DNA ligase adenylation domain XB05_03200 PF03119 NAD-dependent DNA ligase C4 zinc finger domain XB05_03200 PF00533 BRCA1 C Terminus (BRCT) domain XB05_03200 PF03120 NAD-dependent DNA ligase OB-fold domain XB05_03200 PF12826 Helix-hairpin-helix motif XB05_03205 PF00152 tRNA synthetases class II (D, K and N) XB05_03220 PF01008 Initiation factor 2 subunit family XB05_03225 PF00521 DNA gyrase/topoisomerase IV, subunit A XB05_03225 PF03989 DNA gyrase C-terminal domain, beta-propeller XB05_03230 PF13360 PQQ-like domain XB05_03245 PF01175 Urocanase Rossmann-like domain XB05_03245 PF17392 Urocanase C-terminal domain XB05_03245 PF17391 Urocanase N-terminal domain XB05_03255 PF00221 Aromatic amino acid lyase XB05_03260 PF07969 Amidohydrolase family XB05_03270 PF00392 Bacterial regulatory proteins, gntR family XB05_03270 PF07702 UTRA domain XB05_03295 PF01794 Ferric reductase like transmembrane component XB05_03300 PF00174 Oxidoreductase molybdopterin binding domain XB05_03305 PF00266 Aminotransferase class-V XB05_03310 PF00800 Prephenate dehydratase XB05_03310 PF01842 ACT domain XB05_03310 PF01817 Chorismate mutase type II XB05_03315 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XB05_03320 PF03544 Gram-negative bacterial TonB protein C-terminal XB05_03325 PF03544 Gram-negative bacterial TonB protein C-terminal XB05_03330 PF02403 Seryl-tRNA synthetase N-terminal domain XB05_03330 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XB05_03335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_03335 PF03466 LysR substrate binding domain XB05_03355 PF00672 HAMP domain XB05_03355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_03355 PF02203 Tar ligand binding domain homologue XB05_03385 PF00672 HAMP domain XB05_03385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_03385 PF02203 Tar ligand binding domain homologue XB05_03400 PF00072 Response regulator receiver domain XB05_03400 PF08448 PAS fold XB05_03400 PF13188 PAS domain XB05_03400 PF00512 His Kinase A (phospho-acceptor) domain XB05_03400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_03405 PF00072 Response regulator receiver domain XB05_03405 PF13426 PAS domain XB05_03405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_03410 PF06745 KaiC XB05_03415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_03415 PF13426 PAS domain XB05_03415 PF00072 Response regulator receiver domain XB05_03425 PF03918 Cytochrome C biogenesis protein XB05_03430 PF08534 Redoxin XB05_03435 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XB05_03435 PF01578 Cytochrome C assembly protein XB05_03440 PF03100 CcmE XB05_03450 PF01578 Cytochrome C assembly protein XB05_03455 PF00082 Subtilase family XB05_03465 PF08281 Sigma-70, region 4 XB05_03465 PF04542 Sigma-70 region 2 XB05_03475 PF00034 Cytochrome c XB05_03490 PF05523 WxcM-like, C-terminal XB05_03510 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XB05_03515 PF01943 Polysaccharide biosynthesis protein XB05_03520 PF00535 Glycosyl transferase family 2 XB05_03550 PF13439 Glycosyltransferase Family 4 XB05_03550 PF00534 Glycosyl transferases group 1 XB05_03555 PF00534 Glycosyl transferases group 1 XB05_03555 PF13579 Glycosyl transferase 4-like domain XB05_03570 PF00005 ABC transporter XB05_03575 PF00664 ABC transporter transmembrane region XB05_03575 PF00005 ABC transporter XB05_03580 PF07690 Major Facilitator Superfamily XB05_03585 PF00296 Luciferase-like monooxygenase XB05_03600 PF01595 Cyclin M transmembrane N-terminal domain XB05_03600 PF03471 Transporter associated domain XB05_03600 PF00571 CBS domain XB05_03610 PF01384 Phosphate transporter family XB05_03625 PF00986 DNA gyrase B subunit, carboxyl terminus XB05_03625 PF00204 DNA gyrase B XB05_03625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_03625 PF01751 Toprim domain XB05_03635 PF00117 Glutamine amidotransferase class-I XB05_03635 PF06418 CTP synthase N-terminus XB05_03640 PF00793 DAHP synthetase I family XB05_03650 PF03952 Enolase, N-terminal domain XB05_03650 PF00113 Enolase, C-terminal TIM barrel domain XB05_03655 PF04977 Septum formation initiator XB05_03660 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase XB05_03665 PF02542 YgbB family XB05_03670 PF01142 tRNA pseudouridine synthase D (TruD) XB05_03675 PF01713 Smr domain XB05_03680 PF01975 Survival protein SurE XB05_03690 PF09335 SNARE associated Golgi protein XB05_03695 PF01476 LysM domain XB05_03695 PF01551 Peptidase family M23 XB05_03705 PF01985 CRS1 / YhbY (CRM) domain XB05_03710 PF01728 FtsJ-like methyltransferase XB05_03715 PF17862 AAA+ lid domain XB05_03715 PF06480 FtsH Extracellular XB05_03715 PF00004 ATPase family associated with various cellular activities (AAA) XB05_03715 PF01434 Peptidase family M41 XB05_03720 PF00809 Pterin binding enzyme XB05_03730 PF17209 Hfq protein XB05_03735 PF01926 50S ribosome-binding GTPase XB05_03735 PF16360 GTP-binding GTPase Middle Region XB05_03735 PF13167 GTP-binding GTPase N-terminal XB05_03740 PF02464 Competence-damaged protein XB05_03750 PF03109 ABC1 family XB05_03755 PF01726 LexA DNA binding domain XB05_03755 PF00717 Peptidase S24-like XB05_03760 PF00154 recA bacterial DNA recombination protein XB05_03765 PF02631 RecX family XB05_03770 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XB05_03770 PF02272 DHHA1 domain XB05_03770 PF01411 tRNA synthetases class II (A) XB05_03775 PF02599 Global regulator protein family XB05_03785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_03785 PF08447 PAS fold XB05_03785 PF13426 PAS domain XB05_03790 PF17954 Quercetinase C-terminal cupin domain XB05_03790 PF02678 Pirin XB05_03795 PF03466 LysR substrate binding domain XB05_03795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_03820 PF08543 Phosphomethylpyrimidine kinase XB05_03820 PF02581 Thiamine monophosphate synthase XB05_03835 PF13638 PIN domain XB05_03835 PF02562 PhoH-like protein XB05_03840 PF00578 AhpC/TSA family XB05_03855 PF00701 Dihydrodipicolinate synthetase family XB05_03865 PF00037 4Fe-4S binding domain XB05_03865 PF11953 Domain of unknown function (DUF3470) XB05_03870 PF05035 2-keto-3-deoxy-galactonokinase XB05_03875 PF08450 SMP-30/Gluconolactonase/LRE-like region XB05_03880 PF13378 Enolase C-terminal domain-like XB05_03880 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XB05_03885 PF01081 KDPG and KHG aldolase XB05_03890 PF03466 LysR substrate binding domain XB05_03890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_03905 PF03442 Carbohydrate binding domain X2 XB05_03905 PF00942 Cellulose binding domain XB05_03920 PF01055 Glycosyl hydrolases family 31 XB05_03920 PF17137 Domain of unknown function (DUF5110) XB05_03920 PF16338 Domain of unknown function (DUF4968) XB05_03930 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XB05_03930 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XB05_03940 PF00083 Sugar (and other) transporter XB05_03960 PF01520 N-acetylmuramoyl-L-alanine amidase XB05_03965 PF02649 Type I GTP cyclohydrolase folE2 XB05_03975 PF12627 Probable RNA and SrmB- binding site of polymerase A XB05_03975 PF12626 Polymerase A arginine-rich C-terminus XB05_03975 PF01743 Poly A polymerase head domain XB05_03980 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XB05_03985 PF02548 Ketopantoate hydroxymethyltransferase XB05_03990 PF02569 Pantoate-beta-alanine ligase XB05_03995 PF02261 Aspartate decarboxylase XB05_04000 PF00342 Phosphoglucose isomerase XB05_04020 PF14310 Fibronectin type III-like domain XB05_04020 PF01915 Glycosyl hydrolase family 3 C-terminal domain XB05_04020 PF00933 Glycosyl hydrolase family 3 N terminal domain XB05_04025 PF00474 Sodium:solute symporter family XB05_04030 PF00990 Diguanylate cyclase, GGDEF domain XB05_04030 PF01590 GAF domain XB05_04030 PF00360 Phytochrome region XB05_04030 PF00563 EAL domain XB05_04035 PF02013 Cellulose or protein binding domain XB05_04035 PF00150 Cellulase (glycosyl hydrolase family 5) XB05_04045 PF00072 Response regulator receiver domain XB05_04055 PF04551 GcpE protein XB05_04060 PF01569 PAP2 superfamily XB05_04065 PF07690 Major Facilitator Superfamily XB05_04075 PF01565 FAD binding domain XB05_04075 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain XB05_04080 PF01180 Dihydroorotate dehydrogenase XB05_04095 PF00171 Aldehyde dehydrogenase family XB05_04155 PF00535 Glycosyl transferase family 2 XB05_04160 PF14883 Hypothetical glycosyl hydrolase family 13 XB05_04160 PF01522 Polysaccharide deacetylase XB05_04170 PF17287 POTRA domain XB05_04170 PF08479 POTRA domain, ShlB-type XB05_04170 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB XB05_04185 PF01609 Transposase DDE domain XB05_04185 PF05598 Transposase domain (DUF772) XB05_04215 PF03073 TspO/MBR family XB05_04220 PF13840 ACT domain XB05_04220 PF00742 Homoserine dehydrogenase XB05_04220 PF00696 Amino acid kinase family XB05_04220 PF01842 ACT domain XB05_04220 PF03447 Homoserine dehydrogenase, NAD binding domain XB05_04225 PF08544 GHMP kinases C terminal XB05_04225 PF00288 GHMP kinases N terminal domain XB05_04235 PF00291 Pyridoxal-phosphate dependent enzyme XB05_04235 PF14821 Threonine synthase N terminus XB05_04245 PF00027 Cyclic nucleotide-binding domain XB05_04245 PF13545 Crp-like helix-turn-helix domain XB05_04250 PF13393 Histidyl-tRNA synthetase XB05_04250 PF03129 Anticodon binding domain XB05_04265 PF08029 HisG, C-terminal domain XB05_04265 PF01634 ATP phosphoribosyltransferase XB05_04270 PF00815 Histidinol dehydrogenase XB05_04275 PF00155 Aminotransferase class I and II XB05_04280 PF00475 Imidazoleglycerol-phosphate dehydratase XB05_04285 PF00117 Glutamine amidotransferase class-I XB05_04290 PF00977 Histidine biosynthesis protein XB05_04295 PF00977 Histidine biosynthesis protein XB05_04300 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase XB05_04300 PF01502 Phosphoribosyl-AMP cyclohydrolase XB05_04320 PF03079 ARD/ARD' family XB05_04325 PF00596 Class II Aldolase and Adducin N-terminal domain XB05_04335 PF13520 Amino acid permease XB05_04340 PF13520 Amino acid permease XB05_04350 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XB05_04350 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XB05_04355 PF01565 FAD binding domain XB05_04355 PF02913 FAD linked oxidases, C-terminal domain XB05_04375 PF01132 Elongation factor P (EF-P) OB domain XB05_04375 PF08207 Elongation factor P (EF-P) KOW-like domain XB05_04375 PF09285 Elongation factor P, C-terminal XB05_04380 PF00106 short chain dehydrogenase XB05_04385 PF00682 HMGL-like XB05_04390 PF00378 Enoyl-CoA hydratase/isomerase XB05_04400 PF07664 Ferrous iron transport protein B C terminus XB05_04400 PF02421 Ferrous iron transport protein B XB05_04400 PF07670 Nucleoside recognition XB05_04415 PF00155 Aminotransferase class I and II XB05_04420 PF03475 3-alpha domain XB05_04420 PF03473 MOSC domain XB05_04430 PF05173 Dihydrodipicolinate reductase, C-terminus XB05_04430 PF01113 Dihydrodipicolinate reductase, N-terminus XB05_04435 PF00117 Glutamine amidotransferase class-I XB05_04435 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain XB05_04445 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XB05_04445 PF02142 MGS-like domain XB05_04445 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XB05_04450 PF01272 Transcription elongation factor, GreA/GreB, C-term XB05_04450 PF03449 Transcription elongation factor, N-terminal XB05_04460 PF02272 DHHA1 domain XB05_04460 PF01368 DHH family XB05_04460 PF17768 RecJ OB domain XB05_04475 PF00072 Response regulator receiver domain XB05_04475 PF04397 LytTr DNA-binding domain XB05_04480 PF00472 RF-1 domain XB05_04480 PF03462 PCRF domain XB05_04485 PF00152 tRNA synthetases class II (D, K and N) XB05_04485 PF01336 OB-fold nucleic acid binding domain XB05_04490 PF00072 Response regulator receiver domain XB05_04495 PF00072 Response regulator receiver domain XB05_04495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_04495 PF00512 His Kinase A (phospho-acceptor) domain XB05_04495 PF01627 Hpt domain XB05_04500 PF00378 Enoyl-CoA hydratase/isomerase XB05_04505 PF00501 AMP-binding enzyme XB05_04505 PF13193 AMP-binding enzyme C-terminal domain XB05_04515 PF00330 Aconitase family (aconitate hydratase) XB05_04515 PF00694 Aconitase C-terminal domain XB05_04530 PF00330 Aconitase family (aconitate hydratase) XB05_04530 PF06434 Aconitate hydratase 2 N-terminus XB05_04530 PF11791 Aconitate B N-terminal domain XB05_04535 PF00561 alpha/beta hydrolase fold XB05_04540 PF00990 Diguanylate cyclase, GGDEF domain XB05_04540 PF03707 Bacterial signalling protein N terminal repeat XB05_04540 PF00563 EAL domain XB05_04545 PF01339 CheB methylesterase XB05_04545 PF00072 Response regulator receiver domain XB05_04550 PF03975 CheD chemotactic sensory transduction XB05_04555 PF03705 CheR methyltransferase, all-alpha domain XB05_04555 PF01739 CheR methyltransferase, SAM binding domain XB05_04560 PF02203 Tar ligand binding domain homologue XB05_04560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_04560 PF00672 HAMP domain XB05_04570 PF01584 CheW-like domain XB05_04575 PF07317 Flagellar regulator YcgR XB05_04575 PF07238 PilZ domain XB05_04580 PF00672 HAMP domain XB05_04580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_04580 PF02203 Tar ligand binding domain homologue XB05_04585 PF00672 HAMP domain XB05_04585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_04585 PF02203 Tar ligand binding domain homologue XB05_04590 PF00672 HAMP domain XB05_04590 PF02203 Tar ligand binding domain homologue XB05_04590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_04595 PF00672 HAMP domain XB05_04595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_04595 PF02203 Tar ligand binding domain homologue XB05_04600 PF02203 Tar ligand binding domain homologue XB05_04600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_04600 PF00672 HAMP domain XB05_04605 PF00672 HAMP domain XB05_04605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_04605 PF02203 Tar ligand binding domain homologue XB05_04610 PF00672 HAMP domain XB05_04610 PF02203 Tar ligand binding domain homologue XB05_04610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_04620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_04620 PF02203 Tar ligand binding domain homologue XB05_04620 PF00672 HAMP domain XB05_04625 PF00672 HAMP domain XB05_04625 PF17200 Single Cache domain 2 XB05_04625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_04640 PF01627 Hpt domain XB05_04640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_04640 PF02895 Signal transducing histidine kinase, homodimeric domain XB05_04640 PF09078 CheY binding XB05_04640 PF01584 CheW-like domain XB05_04645 PF00072 Response regulator receiver domain XB05_04655 PF01584 CheW-like domain XB05_04660 PF13614 AAA domain XB05_04665 PF13677 Membrane MotB of proton-channel complex MotA/MotB XB05_04665 PF00691 OmpA family XB05_04670 PF01618 MotA/TolQ/ExbB proton channel family XB05_04720 PF01584 CheW-like domain XB05_04720 PF02895 Signal transducing histidine kinase, homodimeric domain XB05_04720 PF01627 Hpt domain XB05_04720 PF07194 P2 response regulator binding domain XB05_04720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_04725 PF04344 Chemotaxis phosphatase, CheZ XB05_04730 PF00072 Response regulator receiver domain XB05_04735 PF04542 Sigma-70 region 2 XB05_04735 PF04545 Sigma-70, region 4 XB05_04735 PF04539 Sigma-70 region 3 XB05_04740 PF10609 NUBPL iron-transfer P-loop NTPase XB05_04745 PF00448 SRP54-type protein, GTPase domain XB05_04750 PF00771 FHIPEP family XB05_04755 PF01312 FlhB HrpN YscU SpaS Family XB05_04760 PF00563 EAL domain XB05_04760 PF03707 Bacterial signalling protein N terminal repeat XB05_04760 PF00990 Diguanylate cyclase, GGDEF domain XB05_04765 PF00563 EAL domain XB05_04765 PF13188 PAS domain XB05_04765 PF00990 Diguanylate cyclase, GGDEF domain XB05_04765 PF03707 Bacterial signalling protein N terminal repeat XB05_04770 PF01311 Bacterial export proteins, family 1 XB05_04775 PF01313 Bacterial export proteins, family 3 XB05_04780 PF00813 FliP family XB05_04785 PF04347 Flagellar biosynthesis protein, FliO XB05_04790 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XB05_04795 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XB05_04795 PF02154 Flagellar motor switch protein FliM XB05_04815 PF18269 T3SS EscN ATPase C-terminal domain XB05_04815 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XB05_04825 PF14842 FliG N-terminal domain XB05_04825 PF01706 FliG C-terminal domain XB05_04825 PF14841 FliG middle domain XB05_04830 PF08345 Flagellar M-ring protein C-terminal XB05_04830 PF01514 Secretory protein of YscJ/FliF family XB05_04835 PF02049 Flagellar hook-basal body complex protein FliE XB05_04840 PF00534 Glycosyl transferases group 1 XB05_04840 PF00535 Glycosyl transferase family 2 XB05_04850 PF02348 Cytidylyltransferase XB05_04895 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XB05_04895 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XB05_04905 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XB05_04910 PF02954 Bacterial regulatory protein, Fis family XB05_04910 PF00072 Response regulator receiver domain XB05_04910 PF00158 Sigma-54 interaction domain XB05_04915 PF00072 Response regulator receiver domain XB05_04915 PF01339 CheB methylesterase XB05_04920 PF04552 Sigma-54, DNA binding domain XB05_04920 PF00309 Sigma-54 factor, Activator interacting domain (AID) XB05_04920 PF04963 Sigma-54 factor, core binding domain XB05_04925 PF00196 Bacterial regulatory proteins, luxR family XB05_04925 PF00072 Response regulator receiver domain XB05_04940 PF02561 Flagellar protein FliS XB05_04945 PF07195 Flagellar hook-associated protein 2 C-terminus XB05_04945 PF02465 Flagellar hook-associated protein 2 N-terminus XB05_04945 PF07196 Flagellin hook IN motif XB05_04955 PF03466 LysR substrate binding domain XB05_04955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_04965 PF03743 Bacterial conjugation TrbI-like protein XB05_04970 PF03524 Conjugal transfer protein XB05_04995 PF03135 CagE, TrbE, VirB family, component of type IV transporter system XB05_05010 PF00437 Type II/IV secretion system protein XB05_05020 PF02534 Type IV secretory system Conjugative DNA transfer XB05_05030 PF00665 Integrase core domain XB05_05040 PF00440 Bacterial regulatory proteins, tetR family XB05_05050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_05050 PF03466 LysR substrate binding domain XB05_05055 PF07690 Major Facilitator Superfamily XB05_05065 PF07690 Major Facilitator Superfamily XB05_05075 PF00440 Bacterial regulatory proteins, tetR family XB05_05110 PF00464 Serine hydroxymethyltransferase XB05_05120 PF00202 Aminotransferase class-III XB05_05130 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain XB05_05130 PF00117 Glutamine amidotransferase class-I XB05_05135 PF01168 Alanine racemase, N-terminal domain XB05_05140 PF00155 Aminotransferase class I and II XB05_05140 PF00392 Bacterial regulatory proteins, gntR family XB05_05155 PF10502 Signal peptidase, peptidase S26 XB05_05170 PF13614 AAA domain XB05_05215 PF05284 Protein of unknown function (DUF736) XB05_05230 PF17762 HTH domain found in ParB protein XB05_05230 PF02195 ParB-like nuclease domain XB05_05235 PF06067 Domain of unknown function (DUF932) XB05_05245 PF06480 FtsH Extracellular XB05_05245 PF01434 Peptidase family M41 XB05_05245 PF17862 AAA+ lid domain XB05_05245 PF00004 ATPase family associated with various cellular activities (AAA) XB05_05265 PF00580 UvrD/REP helicase N-terminal domain XB05_05265 PF13361 UvrD-like helicase C-terminal domain XB05_05275 PF00899 ThiF family XB05_05290 PF00700 Bacterial flagellin C-terminal helical region XB05_05290 PF07196 Flagellin hook IN motif XB05_05290 PF00669 Bacterial flagellin N-terminal helical region XB05_05300 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XB05_05300 PF07196 Flagellin hook IN motif XB05_05305 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase XB05_05305 PF10135 Rod binding protein XB05_05310 PF02119 Flagellar P-ring protein XB05_05315 PF02107 Flagellar L-ring protein XB05_05320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XB05_05320 PF00460 Flagella basal body rod protein XB05_05325 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XB05_05325 PF00460 Flagella basal body rod protein XB05_05330 PF07559 Flagellar basal body protein FlaE XB05_05330 PF00460 Flagella basal body rod protein XB05_05330 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XB05_05335 PF03963 Flagellar hook capping protein - N-terminal region XB05_05335 PF13860 FlgD Ig-like domain XB05_05335 PF13861 FlgD Tudor-like domain XB05_05340 PF00460 Flagella basal body rod protein XB05_05340 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XB05_05345 PF00460 Flagella basal body rod protein XB05_05350 PF01584 CheW-like domain XB05_05350 PF00072 Response regulator receiver domain XB05_05370 PF00512 His Kinase A (phospho-acceptor) domain XB05_05370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_05375 PF03707 Bacterial signalling protein N terminal repeat XB05_05375 PF00990 Diguanylate cyclase, GGDEF domain XB05_05375 PF00563 EAL domain XB05_05380 PF07730 Histidine kinase XB05_05380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_05385 PF00563 EAL domain XB05_05385 PF00990 Diguanylate cyclase, GGDEF domain XB05_05385 PF03707 Bacterial signalling protein N terminal repeat XB05_05395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_05395 PF00672 HAMP domain XB05_05395 PF12729 Four helix bundle sensory module for signal transduction XB05_05400 PF04356 Protein of unknown function (DUF489) XB05_05410 PF00293 NUDIX domain XB05_05415 PF02617 ATP-dependent Clp protease adaptor protein ClpS XB05_05420 PF10431 C-terminal, D2-small domain, of ClpB protein XB05_05420 PF00004 ATPase family associated with various cellular activities (AAA) XB05_05420 PF02861 Clp amino terminal domain, pathogenicity island component XB05_05420 PF07724 AAA domain (Cdc48 subfamily) XB05_05420 PF17871 AAA lid domain XB05_05425 PF01176 Translation initiation factor 1A / IF-1 XB05_05430 PF03588 Leucyl/phenylalanyl-tRNA protein transferase XB05_05440 PF07992 Pyridine nucleotide-disulphide oxidoreductase XB05_05445 PF13491 4TM region of DNA translocase FtsK/SpoIIIE XB05_05445 PF17854 FtsK alpha domain XB05_05445 PF09397 Ftsk gamma domain XB05_05445 PF01580 FtsK/SpoIIIE family XB05_05455 PF03548 Outer membrane lipoprotein carrier protein LolA XB05_05460 PF00004 ATPase family associated with various cellular activities (AAA) XB05_05460 PF16193 AAA C-terminal domain XB05_05460 PF12002 MgsA AAA+ ATPase C terminal XB05_05465 PF02537 CrcB-like protein, Camphor Resistance (CrcB) XB05_05470 PF00108 Thiolase, N-terminal domain XB05_05470 PF02803 Thiolase, C-terminal domain XB05_05475 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XB05_05475 PF00378 Enoyl-CoA hydratase/isomerase XB05_05475 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XB05_05485 PF00334 Nucleoside diphosphate kinase XB05_05490 PF04055 Radical SAM superfamily XB05_05500 PF13464 Domain of unknown function (DUF4115) XB05_05510 PF13360 PQQ-like domain XB05_05510 PF01011 PQQ enzyme repeat XB05_05515 PF01926 50S ribosome-binding GTPase XB05_05515 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal XB05_05520 PF03454 MoeA C-terminal region (domain IV) XB05_05520 PF00994 Probable molybdopterin binding domain XB05_05520 PF03453 MoeA N-terminal region (domain I and II) XB05_05525 PF00899 ThiF family XB05_05550 PF03372 Endonuclease/Exonuclease/phosphatase family XB05_05560 PF00994 Probable molybdopterin binding domain XB05_05560 PF03454 MoeA C-terminal region (domain IV) XB05_05560 PF03453 MoeA N-terminal region (domain I and II) XB05_05565 PF12804 MobA-like NTP transferase domain XB05_05575 PF10414 Sirohaem synthase dimerisation region XB05_05575 PF14824 Sirohaem biosynthesis protein central XB05_05575 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XB05_05580 PF00072 Response regulator receiver domain XB05_05580 PF03861 ANTAR domain XB05_05590 PF07690 Major Facilitator Superfamily XB05_05595 PF04324 BFD-like [2Fe-2S] binding domain XB05_05595 PF07992 Pyridine nucleotide-disulphide oxidoreductase XB05_05595 PF18267 Rubredoxin NAD+ reductase C-terminal domain XB05_05595 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XB05_05595 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XB05_05600 PF00355 Rieske [2Fe-2S] domain XB05_05600 PF11723 Homotrimeric ring hydroxylase XB05_05605 PF01568 Molydopterin dinucleotide binding domain XB05_05605 PF00384 Molybdopterin oxidoreductase XB05_05605 PF04879 Molybdopterin oxidoreductase Fe4S4 domain XB05_05605 PF04324 BFD-like [2Fe-2S] binding domain XB05_05610 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XB05_05630 PF08448 PAS fold XB05_05630 PF08447 PAS fold XB05_05630 PF00990 Diguanylate cyclase, GGDEF domain XB05_05630 PF00563 EAL domain XB05_05635 PF12951 Passenger-associated-transport-repeat XB05_05640 PF00082 Subtilase family XB05_05640 PF03797 Autotransporter beta-domain XB05_05665 PF07995 Glucose / Sorbosone dehydrogenase XB05_05675 PF00072 Response regulator receiver domain XB05_05675 PF13426 PAS domain XB05_05675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_05680 PF00512 His Kinase A (phospho-acceptor) domain XB05_05680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_05715 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XB05_05725 PF00672 HAMP domain XB05_05725 PF02203 Tar ligand binding domain homologue XB05_05725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_05745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_05745 PF03466 LysR substrate binding domain XB05_05755 PF01062 Bestrophin, RFP-TM, chloride channel XB05_05765 PF00072 Response regulator receiver domain XB05_05765 PF00196 Bacterial regulatory proteins, luxR family XB05_05780 PF00106 short chain dehydrogenase XB05_05810 PF01106 NifU-like domain XB05_05815 PF01329 Pterin 4 alpha carbinolamine dehydratase XB05_05825 PF02535 ZIP Zinc transporter XB05_05830 PF01479 S4 domain XB05_05830 PF00849 RNA pseudouridylate synthase XB05_05835 PF00575 S1 RNA binding domain XB05_05835 PF10150 Ribonuclease E/G family XB05_05835 PF12111 Polyribonucleotide phosphorylase C terminal XB05_05840 PF00196 Bacterial regulatory proteins, luxR family XB05_05840 PF00072 Response regulator receiver domain XB05_05855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XB05_05865 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XB05_05865 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XB05_05865 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XB05_05890 PF01066 CDP-alcohol phosphatidyltransferase XB05_05895 PF08459 UvrC Helix-hairpin-helix N-terminal XB05_05895 PF02151 UvrB/uvrC motif XB05_05895 PF01541 GIY-YIG catalytic domain XB05_05905 PF01451 Low molecular weight phosphotyrosine protein phosphatase XB05_05910 PF02348 Cytidylyltransferase XB05_05915 PF02606 Tetraacyldisaccharide-1-P 4'-kinase XB05_05920 PF00664 ABC transporter transmembrane region XB05_05920 PF00005 ABC transporter XB05_05925 PF02472 Biopolymer transport protein ExbD/TolR XB05_05930 PF01618 MotA/TolQ/ExbB proton channel family XB05_05935 PF03772 Competence protein XB05_05935 PF00753 Metallo-beta-lactamase superfamily XB05_05945 PF00005 ABC transporter XB05_05950 PF12704 MacB-like periplasmic core domain XB05_05950 PF02687 FtsX-like permease family XB05_05960 PF03937 Flavinator of succinate dehydrogenase XB05_05965 PF13085 2Fe-2S iron-sulfur cluster binding domain XB05_05975 PF00890 FAD binding domain XB05_05975 PF02910 Fumarate reductase flavoprotein C-term XB05_05980 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XB05_05985 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XB05_05995 PF17912 MalK OB fold domain XB05_05995 PF00005 ABC transporter XB05_06000 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XB05_06000 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XB05_06005 PF02685 Glucokinase XB05_06010 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase XB05_06015 PF00920 Dehydratase family XB05_06020 PF01081 KDPG and KHG aldolase XB05_06025 PF00873 AcrB/AcrD/AcrF family XB05_06030 PF00873 AcrB/AcrD/AcrF family XB05_06035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XB05_06045 PF00034 Cytochrome c XB05_06085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_06085 PF00512 His Kinase A (phospho-acceptor) domain XB05_06085 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XB05_06085 PF00072 Response regulator receiver domain XB05_06085 PF00672 HAMP domain XB05_06085 PF01627 Hpt domain XB05_06090 PF16921 Tex protein YqgF-like domain XB05_06090 PF09371 Tex-like protein N-terminal domain XB05_06090 PF17674 HHH domain XB05_06090 PF00575 S1 RNA binding domain XB05_06100 PF01266 FAD dependent oxidoreductase XB05_06100 PF00355 Rieske [2Fe-2S] domain XB05_06115 PF00561 alpha/beta hydrolase fold XB05_06125 PF01066 CDP-alcohol phosphatidyltransferase XB05_06145 PF03618 Kinase/pyrophosphorylase XB05_06150 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain XB05_06150 PF00391 PEP-utilising enzyme, mobile domain XB05_06150 PF02896 PEP-utilising enzyme, TIM barrel domain XB05_06155 PF05552 Conserved TM helix XB05_06155 PF00924 Mechanosensitive ion channel XB05_06160 PF00929 Exonuclease XB05_06165 PF14437 MafB19-like deaminase XB05_06170 PF01325 Iron dependent repressor, N-terminal DNA binding domain XB05_06170 PF02742 Iron dependent repressor, metal binding and dimerisation domain XB05_06175 PF01566 Natural resistance-associated macrophage protein XB05_06180 PF00561 alpha/beta hydrolase fold XB05_06200 PF00107 Zinc-binding dehydrogenase XB05_06200 PF08240 Alcohol dehydrogenase GroES-like domain XB05_06205 PF03466 LysR substrate binding domain XB05_06205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_06235 PF01555 DNA methylase XB05_06250 PF00271 Helicase conserved C-terminal domain XB05_06250 PF00176 SNF2 family N-terminal domain XB05_06265 PF03743 Bacterial conjugation TrbI-like protein XB05_06270 PF03524 Conjugal transfer protein XB05_06280 PF04610 TrbL/VirB6 plasmid conjugal transfer protein XB05_06295 PF03135 CagE, TrbE, VirB family, component of type IV transporter system XB05_06305 PF04956 TrbC/VIRB2 family XB05_06310 PF00437 Type II/IV secretion system protein XB05_06320 PF02534 Type IV secretory system Conjugative DNA transfer XB05_06330 PF03466 LysR substrate binding domain XB05_06330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_06335 PF07859 alpha/beta hydrolase fold XB05_06340 PF07690 Major Facilitator Superfamily XB05_06345 PF03466 LysR substrate binding domain XB05_06345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_06350 PF07690 Major Facilitator Superfamily XB05_06355 PF07690 Major Facilitator Superfamily XB05_06360 PF08240 Alcohol dehydrogenase GroES-like domain XB05_06360 PF00107 Zinc-binding dehydrogenase XB05_06365 PF00144 Beta-lactamase XB05_06370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_06370 PF03466 LysR substrate binding domain XB05_06405 PF03466 LysR substrate binding domain XB05_06405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_06410 PF07690 Major Facilitator Superfamily XB05_06415 PF00106 short chain dehydrogenase XB05_06425 PF10502 Signal peptidase, peptidase S26 XB05_06440 PF13614 AAA domain XB05_06475 PF04002 RadC-like JAB domain XB05_06500 PF00589 Phage integrase family XB05_06500 PF13356 Arm DNA-binding domain XB05_06505 PF02540 NAD synthase XB05_06505 PF00958 GMP synthase C terminal domain XB05_06505 PF00117 Glutamine amidotransferase class-I XB05_06510 PF00478 IMP dehydrogenase / GMP reductase domain XB05_06510 PF00571 CBS domain XB05_06515 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain XB05_06515 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain XB05_06525 PF00999 Sodium/hydrogen exchanger family XB05_06525 PF02254 TrkA-N domain XB05_06530 PF00483 Nucleotidyl transferase XB05_06535 PF02719 Polysaccharide biosynthesis protein XB05_06540 PF00953 Glycosyl transferase family 4 XB05_06545 PF18073 Rubredoxin metal binding domain XB05_06555 PF00216 Bacterial DNA-binding protein XB05_06560 PF00575 S1 RNA binding domain XB05_06565 PF02224 Cytidylate kinase XB05_06570 PF00444 Ribosomal protein L36 XB05_06580 PF04371 Porphyromonas-type peptidyl-arginine deiminase XB05_06585 PF00795 Carbon-nitrogen hydrolase XB05_06610 PF00528 Binding-protein-dependent transport system inner membrane component XB05_06615 PF00528 Binding-protein-dependent transport system inner membrane component XB05_06620 PF01547 Bacterial extracellular solute-binding protein XB05_06635 PF00356 Bacterial regulatory proteins, lacI family XB05_06645 PF03795 YCII-related domain XB05_06650 PF02616 Segregation and condensation protein ScpA XB05_06655 PF04079 Segregation and condensation complex subunit ScpB XB05_06660 PF01479 S4 domain XB05_06660 PF00849 RNA pseudouridylate synthase XB05_06675 PF00795 Carbon-nitrogen hydrolase XB05_06680 PF00155 Aminotransferase class I and II XB05_06685 PF00005 ABC transporter XB05_06690 PF03379 CcmB protein XB05_06695 PF01578 Cytochrome C assembly protein XB05_06705 PF03100 CcmE XB05_06715 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XB05_06715 PF01578 Cytochrome C assembly protein XB05_06720 PF08534 Redoxin XB05_06725 PF03918 Cytochrome C biogenesis protein XB05_06735 PF00561 alpha/beta hydrolase fold XB05_06745 PF00005 ABC transporter XB05_06745 PF00664 ABC transporter transmembrane region XB05_06750 PF00005 ABC transporter XB05_06750 PF00664 ABC transporter transmembrane region XB05_06755 PF01654 Cytochrome bd terminal oxidase subunit I XB05_06760 PF02322 Cytochrome bd terminal oxidase subunit II XB05_06780 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain XB05_06780 PF02129 X-Pro dipeptidyl-peptidase (S15 family) XB05_06785 PF00171 Aldehyde dehydrogenase family XB05_06790 PF00696 Amino acid kinase family XB05_06790 PF01472 PUA domain XB05_06805 PF00206 Lyase XB05_06810 PF01118 Semialdehyde dehydrogenase, NAD binding domain XB05_06820 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase XB05_06820 PF00696 Amino acid kinase family XB05_06830 PF00764 Arginosuccinate synthase XB05_06835 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XB05_06835 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XB05_06845 PF01406 tRNA synthetases class I (C) catalytic domain XB05_06845 PF09190 DALR domain XB05_06850 PF02657 Fe-S metabolism associated domain XB05_06860 PF01258 Prokaryotic dksA/traR C4-type zinc finger XB05_06870 PF01809 Putative membrane protein insertion efficiency factor XB05_06875 PF01979 Amidohydrolase family XB05_06880 PF01551 Peptidase family M23 XB05_06880 PF08460 Bacterial SH3 domain XB05_06890 PF06751 Ethanolamine ammonia lyase large subunit (EutB) XB05_06895 PF05985 Ethanolamine ammonia-lyase light chain (EutC) XB05_06910 PF01095 Pectinesterase XB05_06920 PF13419 Haloacid dehalogenase-like hydrolase XB05_06930 PF01979 Amidohydrolase family XB05_06940 PF09285 Elongation factor P, C-terminal XB05_06940 PF08207 Elongation factor P (EF-P) KOW-like domain XB05_06940 PF01132 Elongation factor P (EF-P) OB domain XB05_06945 PF04055 Radical SAM superfamily XB05_06950 PF03707 Bacterial signalling protein N terminal repeat XB05_06950 PF00563 EAL domain XB05_06950 PF13188 PAS domain XB05_06950 PF00990 Diguanylate cyclase, GGDEF domain XB05_06960 PF00588 SpoU rRNA Methylase family XB05_06965 PF00459 Inositol monophosphatase family XB05_06970 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XB05_06970 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XB05_06975 PF00545 ribonuclease XB05_06990 PF00271 Helicase conserved C-terminal domain XB05_06990 PF03880 DbpA RNA binding domain XB05_06990 PF00270 DEAD/DEAH box helicase XB05_06995 PF00156 Phosphoribosyl transferase domain XB05_07000 PF02696 Uncharacterized ACR, YdiU/UPF0061 family XB05_07005 PF07859 alpha/beta hydrolase fold XB05_07010 PF02798 Glutathione S-transferase, N-terminal domain XB05_07010 PF14497 Glutathione S-transferase, C-terminal domain XB05_07015 PF00313 'Cold-shock' DNA-binding domain XB05_07020 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 XB05_07025 PF07152 YaeQ protein XB05_07035 PF00072 Response regulator receiver domain XB05_07035 PF00990 Diguanylate cyclase, GGDEF domain XB05_07035 PF00563 EAL domain XB05_07040 PF01435 Peptidase family M48 XB05_07045 PF00749 tRNA synthetases class I (E and Q), catalytic domain XB05_07050 PF00106 short chain dehydrogenase XB05_07055 PF05233 PHB accumulation regulatory domain XB05_07055 PF07879 PHB/PHA accumulation regulator DNA-binding domain XB05_07070 PF01119 DNA mismatch repair protein, C-terminal domain XB05_07070 PF08676 MutL C terminal dimerisation domain XB05_07075 PF01520 N-acetylmuramoyl-L-alanine amidase XB05_07075 PF11741 AMIN domain XB05_07085 PF01256 Carbohydrate kinase XB05_07085 PF03853 YjeF-related protein N-terminus XB05_07090 PF08331 Domain of unknown function (DUF1730) XB05_07095 PF13742 OB-fold nucleic acid binding domain XB05_07095 PF02601 Exonuclease VII, large subunit XB05_07105 PF03781 Sulfatase-modifying factor enzyme 1 XB05_07110 PF01612 3'-5' exonuclease XB05_07110 PF00570 HRDC domain XB05_07130 PF01584 CheW-like domain XB05_07135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_07135 PF00672 HAMP domain XB05_07135 PF12729 Four helix bundle sensory module for signal transduction XB05_07140 PF02245 Methylpurine-DNA glycosylase (MPG) XB05_07145 PF00270 DEAD/DEAH box helicase XB05_07145 PF08494 DEAD/H associated XB05_07145 PF00271 Helicase conserved C-terminal domain XB05_07155 PF04386 Stringent starvation protein B XB05_07160 PF00043 Glutathione S-transferase, C-terminal domain XB05_07160 PF02798 Glutathione S-transferase, N-terminal domain XB05_07165 PF02167 Cytochrome C1 family XB05_07170 PF00032 Cytochrome b(C-terminal)/b6/petD XB05_07170 PF00033 Cytochrome b/b6/petB XB05_07175 PF00355 Rieske [2Fe-2S] domain XB05_07175 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal XB05_07180 PF01464 Transglycosylase SLT domain XB05_07190 PF13417 Glutathione S-transferase, N-terminal domain XB05_07195 PF00919 Uncharacterized protein family UPF0004 XB05_07195 PF01938 TRAM domain XB05_07195 PF04055 Radical SAM superfamily XB05_07200 PF02562 PhoH-like protein XB05_07205 PF02130 Uncharacterized protein family UPF0054 XB05_07215 PF03471 Transporter associated domain XB05_07215 PF00571 CBS domain XB05_07230 PF00171 Aldehyde dehydrogenase family XB05_07240 PF00528 Binding-protein-dependent transport system inner membrane component XB05_07245 PF00528 Binding-protein-dependent transport system inner membrane component XB05_07250 PF00005 ABC transporter XB05_07250 PF08402 TOBE domain XB05_07255 PF02321 Outer membrane efflux protein XB05_07260 PF07690 Major Facilitator Superfamily XB05_07265 PF13533 Biotin-lipoyl like XB05_07270 PF13416 Bacterial extracellular solute-binding protein XB05_07275 PF00202 Aminotransferase class-III XB05_07280 PF03951 Glutamine synthetase, beta-Grasp domain XB05_07280 PF00120 Glutamine synthetase, catalytic domain XB05_07285 PF07722 Peptidase C26 XB05_07290 PF00120 Glutamine synthetase, catalytic domain XB05_07295 PF01266 FAD dependent oxidoreductase XB05_07300 PF00072 Response regulator receiver domain XB05_07300 PF00990 Diguanylate cyclase, GGDEF domain XB05_07305 PF01814 Hemerythrin HHE cation binding domain XB05_07310 PF00083 Sugar (and other) transporter XB05_07310 PF07690 Major Facilitator Superfamily XB05_07315 PF00990 Diguanylate cyclase, GGDEF domain XB05_07315 PF00072 Response regulator receiver domain XB05_07320 PF00672 HAMP domain XB05_07320 PF00512 His Kinase A (phospho-acceptor) domain XB05_07320 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XB05_07320 PF01627 Hpt domain XB05_07320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_07320 PF00072 Response regulator receiver domain XB05_07330 PF00384 Molybdopterin oxidoreductase XB05_07335 PF02634 FdhD/NarQ family XB05_07340 PF07690 Major Facilitator Superfamily XB05_07345 PF00202 Aminotransferase class-III XB05_07355 PF04286 Protein of unknown function (DUF445) XB05_07360 PF01627 Hpt domain XB05_07360 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XB05_07360 PF00072 Response regulator receiver domain XB05_07360 PF00672 HAMP domain XB05_07360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_07360 PF00512 His Kinase A (phospho-acceptor) domain XB05_07365 PF00072 Response regulator receiver domain XB05_07370 PF07690 Major Facilitator Superfamily XB05_07385 PF00106 short chain dehydrogenase XB05_07390 PF00440 Bacterial regulatory proteins, tetR family XB05_07395 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XB05_07400 PF00106 short chain dehydrogenase XB05_07405 PF08659 KR domain XB05_07405 PF00550 Phosphopantetheine attachment site XB05_07405 PF02801 Beta-ketoacyl synthase, C-terminal domain XB05_07405 PF00109 Beta-ketoacyl synthase, N-terminal domain XB05_07405 PF16197 Ketoacyl-synthetase C-terminal extension XB05_07405 PF08990 Erythronolide synthase docking XB05_07405 PF14765 Polyketide synthase dehydratase XB05_07405 PF08240 Alcohol dehydrogenase GroES-like domain XB05_07405 PF00698 Acyl transferase domain XB05_07410 PF05088 Bacterial NAD-glutamate dehydrogenase XB05_07420 PF00529 HlyD membrane-fusion protein of T1SS XB05_07420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XB05_07425 PF00873 AcrB/AcrD/AcrF family XB05_07430 PF00356 Bacterial regulatory proteins, lacI family XB05_07435 PF05524 PEP-utilising enzyme, N-terminal XB05_07435 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XB05_07435 PF00381 PTS HPr component phosphorylation site XB05_07435 PF02896 PEP-utilising enzyme, TIM barrel domain XB05_07435 PF00391 PEP-utilising enzyme, mobile domain XB05_07440 PF00294 pfkB family carbohydrate kinase XB05_07445 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit XB05_07455 PF07549 SecD/SecF GG Motif XB05_07455 PF02355 Protein export membrane protein XB05_07460 PF02355 Protein export membrane protein XB05_07460 PF07549 SecD/SecF GG Motif XB05_07460 PF13721 SecD export protein N-terminal TM region XB05_07465 PF02699 Preprotein translocase subunit XB05_07470 PF01702 Queuine tRNA-ribosyltransferase XB05_07475 PF02547 Queuosine biosynthesis protein XB05_07515 PF00759 Glycosyl hydrolase family 9 XB05_07515 PF02927 Cellulase N-terminal ig-like domain XB05_07525 PF00037 4Fe-4S binding domain XB05_07540 PF01467 Cytidylyltransferase-like XB05_07550 PF00183 Hsp90 protein XB05_07550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_07560 PF07715 TonB-dependent Receptor Plug Domain XB05_07560 PF00593 TonB dependent receptor XB05_07595 PF13520 Amino acid permease XB05_07610 PF00557 Metallopeptidase family M24 XB05_07610 PF01321 Creatinase/Prolidase N-terminal domain XB05_07615 PF00171 Aldehyde dehydrogenase family XB05_07620 PF00701 Dihydrodipicolinate synthetase family XB05_07625 PF07992 Pyridine nucleotide-disulphide oxidoreductase XB05_07625 PF04324 BFD-like [2Fe-2S] binding domain XB05_07635 PF01266 FAD dependent oxidoreductase XB05_07640 PF05544 Proline racemase XB05_07650 PF02881 SRP54-type protein, helical bundle domain XB05_07650 PF00448 SRP54-type protein, GTPase domain XB05_07660 PF00633 Helix-hairpin-helix motif XB05_07660 PF00730 HhH-GPD superfamily base excision DNA repair protein XB05_07660 PF10576 Iron-sulfur binding domain of endonuclease III XB05_07660 PF14815 NUDIX domain XB05_07665 PF04362 Bacterial Fe(2+) trafficking XB05_07670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_07670 PF13426 PAS domain XB05_07670 PF00072 Response regulator receiver domain XB05_07675 PF00893 Small Multidrug Resistance protein XB05_07705 PF12806 Acetyl-CoA dehydrogenase C-terminal like XB05_07705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XB05_07705 PF02770 Acyl-CoA dehydrogenase, middle domain XB05_07705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XB05_07715 PF02780 Transketolase, C-terminal domain XB05_07715 PF13292 1-deoxy-D-xylulose-5-phosphate synthase XB05_07715 PF02779 Transketolase, pyrimidine binding domain XB05_07735 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XB05_07740 PF16123 Hydroxyacylglutathione hydrolase C-terminus XB05_07740 PF00753 Metallo-beta-lactamase superfamily XB05_07745 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XB05_07745 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XB05_07760 PF03808 Glycosyl transferase WecB/TagA/CpsF family XB05_07775 PF14667 Polysaccharide biosynthesis C-terminal domain XB05_07785 PF00534 Glycosyl transferases group 1 XB05_07785 PF13439 Glycosyltransferase Family 4 XB05_07805 PF02397 Bacterial sugar transferase XB05_07825 PF13411 MerR HTH family regulatory protein XB05_07830 PF00216 Bacterial DNA-binding protein XB05_07835 PF03483 B3/4 domain XB05_07835 PF03484 tRNA synthetase B5 domain XB05_07835 PF03147 Ferredoxin-fold anticodon binding domain XB05_07835 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain XB05_07835 PF01588 Putative tRNA binding domain XB05_07840 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain XB05_07840 PF01409 tRNA synthetases class II core domain (F) XB05_07845 PF00453 Ribosomal protein L20 XB05_07850 PF01632 Ribosomal protein L35 XB05_07855 PF00707 Translation initiation factor IF-3, C-terminal domain XB05_07855 PF05198 Translation initiation factor IF-3, N-terminal domain XB05_07860 PF02824 TGS domain XB05_07860 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XB05_07860 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XB05_07860 PF03129 Anticodon binding domain XB05_07865 PF00356 Bacterial regulatory proteins, lacI family XB05_07870 PF00686 Starch binding domain XB05_07870 PF00128 Alpha amylase, catalytic domain XB05_07885 PF10566 Glycoside hydrolase 97 XB05_07885 PF14508 Glycosyl-hydrolase 97 N-terminal XB05_07885 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation XB05_07895 PF00128 Alpha amylase, catalytic domain XB05_07945 PF03135 CagE, TrbE, VirB family, component of type IV transporter system XB05_07950 PF05101 Type IV secretory pathway, VirB3-like protein XB05_07960 PF01464 Transglycosylase SLT domain XB05_07965 PF00437 Type II/IV secretion system protein XB05_07970 PF03743 Bacterial conjugation TrbI-like protein XB05_07990 PF02534 Type IV secretory system Conjugative DNA transfer XB05_08005 PF12344 Ultra-violet resistance protein B XB05_08005 PF17757 UvrB interaction domain XB05_08005 PF00271 Helicase conserved C-terminal domain XB05_08005 PF02151 UvrB/uvrC motif XB05_08005 PF04851 Type III restriction enzyme, res subunit XB05_08040 PF07963 Prokaryotic N-terminal methylation motif XB05_08040 PF00114 Pilin (bacterial filament) XB05_08045 PF11892 Domain of unknown function (DUF3412) XB05_08045 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases XB05_08045 PF03641 Possible lysine decarboxylase XB05_08050 PF00593 TonB dependent receptor XB05_08055 PF01914 MarC family integral membrane protein XB05_08065 PF00462 Glutaredoxin XB05_08070 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XB05_08070 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XB05_08075 PF02222 ATP-grasp domain XB05_08075 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain XB05_08080 PF00731 AIR carboxylase XB05_08090 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain XB05_08090 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain XB05_08100 PF00013 KH domain XB05_08100 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain XB05_08100 PF01138 3' exoribonuclease family, domain 1 XB05_08100 PF03725 3' exoribonuclease family, domain 2 XB05_08100 PF00575 S1 RNA binding domain XB05_08105 PF00312 Ribosomal protein S15 XB05_08110 PF16198 tRNA pseudouridylate synthase B C-terminal domain XB05_08110 PF01509 TruB family pseudouridylate synthase (N terminal domain) XB05_08110 PF09157 Pseudouridine synthase II TruB, C-terminal XB05_08115 PF02033 Ribosome-binding factor A XB05_08120 PF08364 Bacterial translation initiation factor IF-2 associated region XB05_08120 PF00009 Elongation factor Tu GTP binding domain XB05_08120 PF11987 Translation-initiation factor 2 XB05_08120 PF04760 Translation initiation factor IF-2, N-terminal region XB05_08125 PF13184 NusA-like KH domain XB05_08125 PF00575 S1 RNA binding domain XB05_08125 PF08529 NusA N-terminal domain XB05_08130 PF02576 RimP N-terminal domain XB05_08130 PF17384 RimP C-terminal SH3 domain XB05_08140 PF00361 Proton-conducting membrane transporter XB05_08145 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus XB05_08145 PF00361 Proton-conducting membrane transporter XB05_08150 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XB05_08150 PF00361 Proton-conducting membrane transporter XB05_08155 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XB05_08160 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 XB05_08165 PF12838 4Fe-4S dicluster domain XB05_08170 PF00146 NADH dehydrogenase XB05_08175 PF00384 Molybdopterin oxidoreductase XB05_08175 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal XB05_08175 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XB05_08180 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit XB05_08180 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region XB05_08180 PF10531 SLBB domain XB05_08190 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit XB05_08195 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit XB05_08200 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit XB05_08205 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 XB05_08220 PF00121 Triosephosphate isomerase XB05_08225 PF00106 short chain dehydrogenase XB05_08240 PF00563 EAL domain XB05_08240 PF00990 Diguanylate cyclase, GGDEF domain XB05_08240 PF03707 Bacterial signalling protein N terminal repeat XB05_08255 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XB05_08255 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XB05_08255 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XB05_08255 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XB05_08260 PF01039 Carboxyl transferase domain XB05_08260 PF17848 Acetyl-coA carboxylase zinc finger domain XB05_08265 PF00290 Tryptophan synthase alpha chain XB05_08275 PF00291 Pyridoxal-phosphate dependent enzyme XB05_08280 PF03466 LysR substrate binding domain XB05_08280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_08285 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase XB05_08290 PF01416 tRNA pseudouridine synthase XB05_08305 PF01118 Semialdehyde dehydrogenase, NAD binding domain XB05_08305 PF02774 Semialdehyde dehydrogenase, dimerisation domain XB05_08310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XB05_08310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XB05_08315 PF01264 Chorismate synthase XB05_08325 PF05175 Methyltransferase small domain XB05_08330 PF02630 SCO1/SenC XB05_08335 PF02666 Phosphatidylserine decarboxylase XB05_08345 PF05872 Bacterial protein of unknown function (DUF853) XB05_08350 PF00293 NUDIX domain XB05_08365 PF01272 Transcription elongation factor, GreA/GreB, C-term XB05_08365 PF03449 Transcription elongation factor, N-terminal XB05_08370 PF04055 Radical SAM superfamily XB05_08370 PF00919 Uncharacterized protein family UPF0004 XB05_08370 PF18693 TRAM domain XB05_08400 PF01555 DNA methylase XB05_08490 PF01738 Dienelactone hydrolase family XB05_08510 PF00692 dUTPase XB05_08515 PF10609 NUBPL iron-transfer P-loop NTPase XB05_08520 PF07715 TonB-dependent Receptor Plug Domain XB05_08520 PF00593 TonB dependent receptor XB05_08535 PF01431 Peptidase family M13 XB05_08535 PF05649 Peptidase family M13 XB05_08555 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XB05_08555 PF07992 Pyridine nucleotide-disulphide oxidoreductase XB05_08560 PF01266 FAD dependent oxidoreductase XB05_08565 PF04235 Protein of unknown function (DUF418) XB05_08570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XB05_08575 PF00877 NlpC/P60 family XB05_08580 PF00877 NlpC/P60 family XB05_08590 PF13649 Methyltransferase domain XB05_08595 PF00375 Sodium:dicarboxylate symporter family XB05_08600 PF00245 Alkaline phosphatase XB05_08605 PF09179 TilS substrate binding domain XB05_08605 PF11734 TilS substrate C-terminal domain XB05_08605 PF01171 PP-loop family XB05_08610 PF02609 Exonuclease VII small subunit XB05_08615 PF00348 Polyprenyl synthetase XB05_08620 PF14521 Lysine-specific metallo-endopeptidase XB05_08630 PF01523 Putative modulator of DNA gyrase XB05_08635 PF04751 Protein of unknown function (DUF615) XB05_08640 PF01523 Putative modulator of DNA gyrase XB05_08645 PF14310 Fibronectin type III-like domain XB05_08645 PF00933 Glycosyl hydrolase family 3 N terminal domain XB05_08645 PF01915 Glycosyl hydrolase family 3 C-terminal domain XB05_08655 PF00106 short chain dehydrogenase XB05_08660 PF04616 Glycosyl hydrolases family 43 XB05_08660 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XB05_08680 PF10150 Ribonuclease E/G family XB05_08680 PF00575 S1 RNA binding domain XB05_08685 PF02545 Maf-like protein XB05_08690 PF04402 Protein of unknown function (DUF541) XB05_08700 PF02590 Predicted SPOUT methyltransferase XB05_08720 PF01467 Cytidylyltransferase-like XB05_08735 PF00133 tRNA synthetases class I (I, L, M and V) XB05_08735 PF13603 Leucyl-tRNA synthetase, Domain 2 XB05_08735 PF08264 Anticodon-binding domain of tRNA XB05_08745 PF00085 Thioredoxin XB05_08755 PF04070 Domain of unknown function (DUF378) XB05_08770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_08770 PF03466 LysR substrate binding domain XB05_08775 PF01022 Bacterial regulatory protein, arsR family XB05_08805 PF00664 ABC transporter transmembrane region XB05_08805 PF00005 ABC transporter XB05_08815 PF00873 AcrB/AcrD/AcrF family XB05_08830 PF02321 Outer membrane efflux protein XB05_08835 PF00486 Transcriptional regulatory protein, C terminal XB05_08835 PF00072 Response regulator receiver domain XB05_08840 PF00512 His Kinase A (phospho-acceptor) domain XB05_08840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_08840 PF00672 HAMP domain XB05_08845 PF00999 Sodium/hydrogen exchanger family XB05_08850 PF00144 Beta-lactamase XB05_08855 PF03737 Aldolase/RraA XB05_08870 PF00990 Diguanylate cyclase, GGDEF domain XB05_08870 PF00072 Response regulator receiver domain XB05_08875 PF01479 S4 domain XB05_08875 PF00849 RNA pseudouridylate synthase XB05_08880 PF08448 PAS fold XB05_08880 PF00990 Diguanylate cyclase, GGDEF domain XB05_08880 PF00563 EAL domain XB05_08885 PF00270 DEAD/DEAH box helicase XB05_08885 PF03880 DbpA RNA binding domain XB05_08885 PF00271 Helicase conserved C-terminal domain XB05_08890 PF04542 Sigma-70 region 2 XB05_08890 PF04539 Sigma-70 region 3 XB05_08890 PF04545 Sigma-70, region 4 XB05_08910 PF01494 FAD binding domain XB05_08940 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain XB05_08940 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain XB05_08950 PF00654 Voltage gated chloride channel XB05_08965 PF00593 TonB dependent receptor XB05_08965 PF07715 TonB-dependent Receptor Plug Domain XB05_08990 PF00248 Aldo/keto reductase family XB05_08995 PF07690 Major Facilitator Superfamily XB05_09000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_09000 PF03466 LysR substrate binding domain XB05_09010 PF12833 Helix-turn-helix domain XB05_09010 PF06719 AraC-type transcriptional regulator N-terminus XB05_09025 PF00440 Bacterial regulatory proteins, tetR family XB05_09025 PF16859 Tetracyclin repressor-like, C-terminal domain XB05_09030 PF02321 Outer membrane efflux protein XB05_09035 PF00873 AcrB/AcrD/AcrF family XB05_09040 PF00529 HlyD membrane-fusion protein of T1SS XB05_09040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XB05_09050 PF01475 Ferric uptake regulator family XB05_09055 PF00749 tRNA synthetases class I (E and Q), catalytic domain XB05_09065 PF00795 Carbon-nitrogen hydrolase XB05_09080 PF06123 Inner membrane protein CreD XB05_09090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_09090 PF00672 HAMP domain XB05_09090 PF00512 His Kinase A (phospho-acceptor) domain XB05_09095 PF00486 Transcriptional regulatory protein, C terminal XB05_09095 PF00072 Response regulator receiver domain XB05_09100 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ XB05_09115 PF00271 Helicase conserved C-terminal domain XB05_09115 PF17757 UvrB interaction domain XB05_09115 PF00270 DEAD/DEAH box helicase XB05_09115 PF02559 CarD-like/TRCF domain XB05_09115 PF03461 TRCF domain XB05_09125 PF01584 CheW-like domain XB05_09125 PF02895 Signal transducing histidine kinase, homodimeric domain XB05_09125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_09125 PF01627 Hpt domain XB05_09125 PF09078 CheY binding XB05_09130 PF00672 HAMP domain XB05_09130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_09135 PF01584 CheW-like domain XB05_09140 PF00990 Diguanylate cyclase, GGDEF domain XB05_09140 PF00563 EAL domain XB05_09140 PF13426 PAS domain XB05_09145 PF01739 CheR methyltransferase, SAM binding domain XB05_09145 PF03705 CheR methyltransferase, all-alpha domain XB05_09150 PF00072 Response regulator receiver domain XB05_09150 PF01339 CheB methylesterase XB05_09155 PF13091 PLD-like domain XB05_09160 PF05649 Peptidase family M13 XB05_09160 PF01431 Peptidase family M13 XB05_09170 PF00300 Histidine phosphatase superfamily (branch 1) XB05_09175 PF04493 Endonuclease V XB05_09180 PF02678 Pirin XB05_09180 PF05726 Pirin C-terminal cupin domain XB05_09195 PF02678 Pirin XB05_09195 PF05726 Pirin C-terminal cupin domain XB05_09200 PF02554 Carbon starvation protein CstA XB05_09200 PF13722 5TM C-terminal transporter carbon starvation CstA XB05_09205 PF04328 Selenoprotein, putative XB05_09210 PF13419 Haloacid dehalogenase-like hydrolase XB05_09235 PF12804 MobA-like NTP transferase domain XB05_09245 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XB05_09245 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XB05_09250 PF00941 FAD binding domain in molybdopterin dehydrogenase XB05_09250 PF03450 CO dehydrogenase flavoprotein C-terminal domain XB05_09255 PF01799 [2Fe-2S] binding domain XB05_09255 PF10518 TAT (twin-arginine translocation) pathway signal sequence XB05_09255 PF00111 2Fe-2S iron-sulfur cluster binding domain XB05_09260 PF00698 Acyl transferase domain XB05_09260 PF00107 Zinc-binding dehydrogenase XB05_09260 PF02801 Beta-ketoacyl synthase, C-terminal domain XB05_09260 PF14765 Polyketide synthase dehydratase XB05_09260 PF08240 Alcohol dehydrogenase GroES-like domain XB05_09260 PF00550 Phosphopantetheine attachment site XB05_09260 PF08659 KR domain XB05_09260 PF00109 Beta-ketoacyl synthase, N-terminal domain XB05_09260 PF16197 Ketoacyl-synthetase C-terminal extension XB05_09265 PF00563 EAL domain XB05_09265 PF00360 Phytochrome region XB05_09265 PF00990 Diguanylate cyclase, GGDEF domain XB05_09265 PF01590 GAF domain XB05_09270 PF00436 Single-strand binding protein family XB05_09275 PF00348 Polyprenyl synthetase XB05_09285 PF08245 Mur ligase middle domain XB05_09285 PF02875 Mur ligase family, glutamate ligase domain XB05_09300 PF01842 ACT domain XB05_09300 PF00696 Amino acid kinase family XB05_09305 PF02567 Phenazine biosynthesis-like protein XB05_09310 PF02567 Phenazine biosynthesis-like protein XB05_09320 PF02566 OsmC-like protein XB05_09325 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XB05_09325 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XB05_09330 PF03652 Holliday junction resolvase XB05_09335 PF02622 Uncharacterized ACR, COG1678 XB05_09340 PF13687 Domain of unknown function (DUF4153) XB05_09345 PF00958 GMP synthase C terminal domain XB05_09345 PF00117 Glutamine amidotransferase class-I XB05_09345 PF03352 Methyladenine glycosylase XB05_09345 PF13302 Acetyltransferase (GNAT) domain XB05_09345 PF13673 Acetyltransferase (GNAT) domain XB05_09355 PF00437 Type II/IV secretion system protein XB05_09360 PF00437 Type II/IV secretion system protein XB05_09365 PF01168 Alanine racemase, N-terminal domain XB05_09370 PF14748 Pyrroline-5-carboxylate reductase dimerisation XB05_09370 PF03807 NADP oxidoreductase coenzyme F420-dependent XB05_09380 PF01476 LysM domain XB05_09380 PF01551 Peptidase family M23 XB05_09400 PF01965 DJ-1/PfpI family XB05_09410 PF02082 Transcriptional regulator XB05_09415 PF01458 Uncharacterized protein family (UPF0051) XB05_09420 PF00005 ABC transporter XB05_09425 PF01458 Uncharacterized protein family (UPF0051) XB05_09430 PF00266 Aminotransferase class-V XB05_09440 PF00355 Rieske [2Fe-2S] domain XB05_09445 PF00593 TonB dependent receptor XB05_09445 PF07715 TonB-dependent Receptor Plug Domain XB05_09450 PF13640 2OG-Fe(II) oxygenase superfamily XB05_09450 PF18331 PKHD-type hydroxylase C-terminal domain XB05_09475 PF02424 ApbE family XB05_09480 PF00667 FAD binding domain XB05_09480 PF00258 Flavodoxin XB05_09480 PF00175 Oxidoreductase NAD-binding domain XB05_09500 PF01546 Peptidase family M20/M25/M40 XB05_09500 PF07687 Peptidase dimerisation domain XB05_09510 PF01636 Phosphotransferase enzyme family XB05_09515 PF00483 Nucleotidyl transferase XB05_09520 PF00308 Bacterial dnaA protein XB05_09525 PF01594 AI-2E family transporter XB05_09535 PF00586 AIR synthase related protein, N-terminal domain XB05_09535 PF02769 AIR synthase related protein, C-terminal domain XB05_09545 PF00551 Formyl transferase XB05_09565 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XB05_09570 PF01722 BolA-like protein XB05_09575 PF00571 CBS domain XB05_09575 PF01380 SIS domain XB05_09590 PF03968 OstA-like protein XB05_09595 PF00005 ABC transporter XB05_09600 PF00309 Sigma-54 factor, Activator interacting domain (AID) XB05_09600 PF04963 Sigma-54 factor, core binding domain XB05_09600 PF04552 Sigma-54, DNA binding domain XB05_09605 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein XB05_09610 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XB05_09615 PF07475 HPr Serine kinase C-terminal domain XB05_09615 PF02603 HPr Serine kinase N terminus XB05_09620 PF03668 P-loop ATPase protein family XB05_09635 PF00381 PTS HPr component phosphorylation site XB05_09640 PF02896 PEP-utilising enzyme, TIM barrel domain XB05_09640 PF00391 PEP-utilising enzyme, mobile domain XB05_09640 PF05524 PEP-utilising enzyme, N-terminal XB05_09645 PF01769 Divalent cation transporter XB05_09645 PF00571 CBS domain XB05_09645 PF03448 MgtE intracellular N domain XB05_09650 PF00756 Putative esterase XB05_09655 PF02322 Cytochrome bd terminal oxidase subunit II XB05_09660 PF01654 Cytochrome bd terminal oxidase subunit I XB05_09670 PF00324 Amino acid permease XB05_09675 PF00544 Pectate lyase XB05_09680 PF00561 alpha/beta hydrolase fold XB05_09685 PF00196 Bacterial regulatory proteins, luxR family XB05_09690 PF00324 Amino acid permease XB05_09705 PF12706 Beta-lactamase superfamily domain XB05_09735 PF09278 MerR, DNA binding XB05_09735 PF00376 MerR family regulatory protein XB05_09740 PF07690 Major Facilitator Superfamily XB05_09745 PF03738 Glutathionylspermidine synthase preATP-grasp XB05_09770 PF04012 PspA/IM30 family XB05_09780 PF00583 Acetyltransferase (GNAT) family XB05_09785 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region XB05_09785 PF01243 Pyridoxamine 5'-phosphate oxidase XB05_09790 PF01202 Shikimate kinase XB05_09795 PF01761 3-dehydroquinate synthase XB05_09805 PF01208 Uroporphyrinogen decarboxylase (URO-D) XB05_09810 PF07690 Major Facilitator Superfamily XB05_09815 PF00072 Response regulator receiver domain XB05_09815 PF00672 HAMP domain XB05_09815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_09815 PF17149 Periplasmic sensor domain found in signal transduction proteins XB05_09815 PF01627 Hpt domain XB05_09815 PF00512 His Kinase A (phospho-acceptor) domain XB05_09820 PF00072 Response regulator receiver domain XB05_09820 PF00486 Transcriptional regulatory protein, C terminal XB05_09825 PF17149 Periplasmic sensor domain found in signal transduction proteins XB05_09825 PF00072 Response regulator receiver domain XB05_09825 PF00672 HAMP domain XB05_09825 PF01627 Hpt domain XB05_09825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_09825 PF00512 His Kinase A (phospho-acceptor) domain XB05_09830 PF04264 YceI-like domain XB05_09835 PF01292 Prokaryotic cytochrome b561 XB05_09845 PF00313 'Cold-shock' DNA-binding domain XB05_09855 PF03315 Serine dehydratase beta chain XB05_09855 PF03313 Serine dehydratase alpha chain XB05_09860 PF12697 Alpha/beta hydrolase family XB05_09865 PF00696 Amino acid kinase family XB05_09865 PF03447 Homoserine dehydrogenase, NAD binding domain XB05_09865 PF00742 Homoserine dehydrogenase XB05_09870 PF01053 Cys/Met metabolism PLP-dependent enzyme XB05_09875 PF00561 alpha/beta hydrolase fold XB05_09880 PF01551 Peptidase family M23 XB05_09885 PF00009 Elongation factor Tu GTP binding domain XB05_09885 PF16658 Class II release factor RF3, C-terminal domain XB05_09890 PF03006 Haemolysin-III related XB05_09895 PF05170 AsmA family XB05_09900 PF00571 CBS domain XB05_09900 PF00478 IMP dehydrogenase / GMP reductase domain XB05_09905 PF00535 Glycosyl transferase family 2 XB05_09910 PF00912 Transglycosylase XB05_09915 PF01430 Hsp33 protein XB05_09925 PF00593 TonB dependent receptor XB05_09925 PF07715 TonB-dependent Receptor Plug Domain XB05_09930 PF00440 Bacterial regulatory proteins, tetR family XB05_09940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XB05_09940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XB05_09940 PF09317 Domain of unknown function (DUF1974) XB05_09970 PF01597 Glycine cleavage H-protein XB05_09975 PF01571 Aminomethyltransferase folate-binding domain XB05_09975 PF08669 Glycine cleavage T-protein C-terminal barrel domain XB05_09985 PF01145 SPFH domain / Band 7 family XB05_09985 PF16200 C-terminal region of band_7 XB05_09990 PF02694 Uncharacterised BCR, YnfA/UPF0060 family XB05_09995 PF03819 MazG nucleotide pyrophosphohydrolase domain XB05_10000 PF00459 Inositol monophosphatase family XB05_10005 PF00293 NUDIX domain XB05_10010 PF00202 Aminotransferase class-III XB05_10015 PF04452 RNA methyltransferase XB05_10020 PF02685 Glucokinase XB05_10035 PF00704 Glycosyl hydrolases family 18 XB05_10035 PF01476 LysM domain XB05_10040 PF00728 Glycosyl hydrolase family 20, catalytic domain XB05_10040 PF07691 PA14 domain XB05_10040 PF02838 Glycosyl hydrolase family 20, domain 2 XB05_10050 PF14310 Fibronectin type III-like domain XB05_10050 PF01915 Glycosyl hydrolase family 3 C-terminal domain XB05_10050 PF07691 PA14 domain XB05_10050 PF00933 Glycosyl hydrolase family 3 N terminal domain XB05_10060 PF17678 Glycosyl hydrolase family 92 N-terminal domain XB05_10060 PF07971 Glycosyl hydrolase family 92 XB05_10065 PF01301 Glycosyl hydrolases family 35 XB05_10075 PF01527 Transposase XB05_10080 PF13276 HTH-like domain XB05_10080 PF13683 Integrase core domain XB05_10095 PF12161 HsdM N-terminal domain XB05_10095 PF02384 N-6 DNA Methylase XB05_10115 PF18766 SWI2/SNF2 ATPase XB05_10115 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) XB05_10115 PF11867 Domain of unknown function (DUF3387) XB05_10155 PF03932 CutC family XB05_10160 PF01112 Asparaginase XB05_10165 PF12450 von Willebrand factor XB05_10165 PF12034 Domain of unknown function (DUF3520) XB05_10165 PF00092 von Willebrand factor type A domain XB05_10170 PF08281 Sigma-70, region 4 XB05_10170 PF04542 Sigma-70 region 2 XB05_10180 PF13302 Acetyltransferase (GNAT) domain XB05_10195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_10195 PF01584 CheW-like domain XB05_10195 PF01627 Hpt domain XB05_10195 PF00072 Response regulator receiver domain XB05_10200 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term XB05_10200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_10205 PF01584 CheW-like domain XB05_10210 PF00072 Response regulator receiver domain XB05_10215 PF00072 Response regulator receiver domain XB05_10220 PF02951 Prokaryotic glutathione synthetase, N-terminal domain XB05_10220 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain XB05_10230 PF03747 ADP-ribosylglycohydrolase XB05_10235 PF00814 Glycoprotease family XB05_10240 PF04851 Type III restriction enzyme, res subunit XB05_10240 PF13307 Helicase C-terminal domain XB05_10250 PF00912 Transglycosylase XB05_10250 PF14814 Bifunctional transglycosylase second domain XB05_10250 PF00905 Penicillin binding protein transpeptidase domain XB05_10255 PF00535 Glycosyl transferase family 2 XB05_10265 PF02824 TGS domain XB05_10265 PF04607 Region found in RelA / SpoT proteins XB05_10265 PF13291 ACT domain XB05_10270 PF12706 Beta-lactamase superfamily domain XB05_10275 PF03070 TENA/THI-4/PQQC family XB05_10280 PF05402 Coenzyme PQQ synthesis protein D (PqqD) XB05_10285 PF13186 Iron-sulfur cluster-binding domain XB05_10285 PF04055 Radical SAM superfamily XB05_10300 PF02685 Glucokinase XB05_10310 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold XB05_10310 PF04408 Helicase associated domain (HA2) XB05_10310 PF00270 DEAD/DEAH box helicase XB05_10310 PF11898 Domain of unknown function (DUF3418) XB05_10310 PF00271 Helicase conserved C-terminal domain XB05_10315 PF00210 Ferritin-like domain XB05_10320 PF09382 RQC domain XB05_10320 PF16124 RecQ zinc-binding XB05_10320 PF00570 HRDC domain XB05_10320 PF00271 Helicase conserved C-terminal domain XB05_10320 PF00270 DEAD/DEAH box helicase XB05_10345 PF01479 S4 domain XB05_10345 PF00849 RNA pseudouridylate synthase XB05_10355 PF00672 HAMP domain XB05_10355 PF02203 Tar ligand binding domain homologue XB05_10355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_10380 PF06508 Queuosine biosynthesis protein QueC XB05_10395 PF00248 Aldo/keto reductase family XB05_10400 PF04055 Radical SAM superfamily XB05_10410 PF00691 OmpA family XB05_10415 PF07676 WD40-like Beta Propeller Repeat XB05_10415 PF04052 TolB amino-terminal domain XB05_10425 PF02472 Biopolymer transport protein ExbD/TolR XB05_10430 PF01618 MotA/TolQ/ExbB proton channel family XB05_10435 PF03061 Thioesterase superfamily XB05_10440 PF05496 Holliday junction DNA helicase RuvB P-loop domain XB05_10440 PF05491 RuvB C-terminal winged helix domain XB05_10440 PF17864 RuvB AAA lid domain XB05_10450 PF02705 K+ potassium transporter XB05_10455 PF01330 RuvA N terminal domain XB05_10455 PF07499 RuvA, C-terminal domain XB05_10460 PF02075 Crossover junction endodeoxyribonuclease RuvC XB05_10465 PF01709 Transcriptional regulator XB05_10480 PF00152 tRNA synthetases class II (D, K and N) XB05_10480 PF01336 OB-fold nucleic acid binding domain XB05_10480 PF02938 GAD domain XB05_10495 PF07690 Major Facilitator Superfamily XB05_10510 PF04185 Phosphoesterase family XB05_10510 PF05506 Domain of unknown function (DUF756) XB05_10520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_10520 PF03466 LysR substrate binding domain XB05_10530 PF00005 ABC transporter XB05_10530 PF12848 ABC transporter XB05_10535 PF07715 TonB-dependent Receptor Plug Domain XB05_10535 PF00593 TonB dependent receptor XB05_10545 PF07715 TonB-dependent Receptor Plug Domain XB05_10545 PF00593 TonB dependent receptor XB05_10550 PF07715 TonB-dependent Receptor Plug Domain XB05_10550 PF00593 TonB dependent receptor XB05_10555 PF00067 Cytochrome P450 XB05_10560 PF00999 Sodium/hydrogen exchanger family XB05_10560 PF02254 TrkA-N domain XB05_10570 PF00593 TonB dependent receptor XB05_10570 PF07660 Secretin and TonB N terminus short domain XB05_10570 PF07715 TonB-dependent Receptor Plug Domain XB05_10580 PF04183 IucA / IucC family XB05_10580 PF06276 Ferric iron reductase FhuF-like transporter XB05_10585 PF07690 Major Facilitator Superfamily XB05_10590 PF04183 IucA / IucC family XB05_10590 PF06276 Ferric iron reductase FhuF-like transporter XB05_10595 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain XB05_10595 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XB05_10610 PF02654 Cobalamin-5-phosphate synthase XB05_10620 PF02277 Phosphoribosyltransferase XB05_10625 PF07715 TonB-dependent Receptor Plug Domain XB05_10625 PF00593 TonB dependent receptor XB05_10645 PF10431 C-terminal, D2-small domain, of ClpB protein XB05_10645 PF17871 AAA lid domain XB05_10645 PF07724 AAA domain (Cdc48 subfamily) XB05_10645 PF02861 Clp amino terminal domain, pathogenicity island component XB05_10645 PF00004 ATPase family associated with various cellular activities (AAA) XB05_10650 PF00005 ABC transporter XB05_10655 PF00528 Binding-protein-dependent transport system inner membrane component XB05_10660 PF09084 NMT1/THI5 like XB05_10665 PF00248 Aldo/keto reductase family XB05_10675 PF00593 TonB dependent receptor XB05_10675 PF07715 TonB-dependent Receptor Plug Domain XB05_10680 PF01541 GIY-YIG catalytic domain XB05_10715 PF07715 TonB-dependent Receptor Plug Domain XB05_10715 PF00593 TonB dependent receptor XB05_10720 PF02358 Trehalose-phosphatase XB05_10725 PF00723 Glycosyl hydrolases family 15 XB05_10730 PF00982 Glycosyltransferase family 20 XB05_10735 PF01011 PQQ enzyme repeat XB05_10740 PF02203 Tar ligand binding domain homologue XB05_10740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_10740 PF00672 HAMP domain XB05_10745 PF04134 Protein of unknown function, DUF393 XB05_10760 PF00849 RNA pseudouridylate synthase XB05_10765 PF13525 Outer membrane lipoprotein XB05_10775 PF02540 NAD synthase XB05_10775 PF00795 Carbon-nitrogen hydrolase XB05_10780 PF00549 CoA-ligase XB05_10780 PF02629 CoA binding domain XB05_10785 PF00549 CoA-ligase XB05_10785 PF08442 ATP-grasp domain XB05_10790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_10790 PF00512 His Kinase A (phospho-acceptor) domain XB05_10795 PF00158 Sigma-54 interaction domain XB05_10795 PF02954 Bacterial regulatory protein, Fis family XB05_10795 PF00072 Response regulator receiver domain XB05_10800 PF00437 Type II/IV secretion system protein XB05_10800 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XB05_10810 PF00114 Pilin (bacterial filament) XB05_10810 PF07963 Prokaryotic N-terminal methylation motif XB05_10815 PF00482 Type II secretion system (T2SS), protein F XB05_10820 PF06750 Bacterial Peptidase A24 N-terminal domain XB05_10820 PF01478 Type IV leader peptidase family XB05_10825 PF01121 Dephospho-CoA kinase XB05_10840 PF00512 His Kinase A (phospho-acceptor) domain XB05_10840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_10840 PF11808 Phosphate regulon sensor protein PhoR XB05_10840 PF00989 PAS fold XB05_10845 PF00486 Transcriptional regulatory protein, C terminal XB05_10845 PF00072 Response regulator receiver domain XB05_10855 PF18030 RimK PreATP-grasp domain XB05_10855 PF08443 RimK-like ATP-grasp domain XB05_10860 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XB05_10860 PF00128 Alpha amylase, catalytic domain XB05_10895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_10895 PF03466 LysR substrate binding domain XB05_10920 PF04002 RadC-like JAB domain XB05_11010 PF13298 DNA polymerase Ligase (LigD) XB05_11010 PF01068 ATP dependent DNA ligase domain XB05_11010 PF04679 ATP dependent DNA ligase C terminal region XB05_11020 PF05974 Domain of unknown function (DUF892) XB05_11070 PF03527 RHS protein XB05_11070 PF05593 RHS Repeat XB05_11105 PF03797 Autotransporter beta-domain XB05_11105 PF00657 GDSL-like Lipase/Acylhydrolase XB05_11115 PF05690 Thiazole biosynthesis protein ThiG XB05_11120 PF02390 Putative methyltransferase XB05_11125 PF03600 Citrate transporter XB05_11125 PF02080 TrkA-C domain XB05_11140 PF01557 Fumarylacetoacetate (FAA) hydrolase family XB05_11145 PF01741 Large-conductance mechanosensitive channel, MscL XB05_11155 PF00356 Bacterial regulatory proteins, lacI family XB05_11165 PF00703 Glycosyl hydrolases family 2 XB05_11165 PF02837 Glycosyl hydrolases family 2, sugar binding domain XB05_11165 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain XB05_11170 PF14508 Glycosyl-hydrolase 97 N-terminal XB05_11170 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation XB05_11170 PF10566 Glycoside hydrolase 97 XB05_11180 PF00135 Carboxylesterase family XB05_11185 PF00588 SpoU rRNA Methylase family XB05_11185 PF08032 RNA 2'-O ribose methyltransferase substrate binding XB05_11195 PF11838 ERAP1-like C-terminal domain XB05_11195 PF01433 Peptidase family M1 domain XB05_11200 PF00873 AcrB/AcrD/AcrF family XB05_11205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XB05_11205 PF00529 HlyD membrane-fusion protein of T1SS XB05_11210 PF00009 Elongation factor Tu GTP binding domain XB05_11215 PF01507 Phosphoadenosine phosphosulfate reductase family XB05_11220 PF00258 Flavodoxin XB05_11220 PF00175 Oxidoreductase NAD-binding domain XB05_11220 PF00667 FAD binding domain XB05_11225 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XB05_11225 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XB05_11230 PF01507 Phosphoadenosine phosphosulfate reductase family XB05_11250 PF01627 Hpt domain XB05_11250 PF00072 Response regulator receiver domain XB05_11250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_11250 PF00512 His Kinase A (phospho-acceptor) domain XB05_11250 PF00672 HAMP domain XB05_11260 PF03466 LysR substrate binding domain XB05_11260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_11265 PF10414 Sirohaem synthase dimerisation region XB05_11265 PF14824 Sirohaem biosynthesis protein central XB05_11265 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XB05_11270 PF00291 Pyridoxal-phosphate dependent enzyme XB05_11280 PF01661 Macro domain XB05_11285 PF00274 Fructose-bisphosphate aldolase class-I XB05_11290 PF00224 Pyruvate kinase, barrel domain XB05_11290 PF02887 Pyruvate kinase, alpha/beta domain XB05_11300 PF00162 Phosphoglycerate kinase XB05_11330 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain XB05_11330 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XB05_11345 PF03922 OmpW family XB05_11355 PF04273 Putative phosphatase (DUF442) XB05_11355 PF00753 Metallo-beta-lactamase superfamily XB05_11365 PF00528 Binding-protein-dependent transport system inner membrane component XB05_11370 PF03459 TOBE domain XB05_11370 PF00005 ABC transporter XB05_11390 PF03965 Penicillinase repressor XB05_11395 PF08521 Two-component sensor kinase N-terminal XB05_11395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_11395 PF00512 His Kinase A (phospho-acceptor) domain XB05_11400 PF00072 Response regulator receiver domain XB05_11400 PF00486 Transcriptional regulatory protein, C terminal XB05_11420 PF00501 AMP-binding enzyme XB05_11445 PF03734 L,D-transpeptidase catalytic domain XB05_11445 PF01476 LysM domain XB05_11450 PF01551 Peptidase family M23 XB05_11450 PF04225 Opacity-associated protein A LysM-like domain XB05_11460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_11460 PF03466 LysR substrate binding domain XB05_11465 PF00593 TonB dependent receptor XB05_11465 PF07715 TonB-dependent Receptor Plug Domain XB05_11470 PF00456 Transketolase, thiamine diphosphate binding domain XB05_11470 PF02780 Transketolase, C-terminal domain XB05_11470 PF02779 Transketolase, pyrimidine binding domain XB05_11475 PF00375 Sodium:dicarboxylate symporter family XB05_11485 PF13519 von Willebrand factor type A domain XB05_11485 PF07584 Aerotolerance regulator N-terminal XB05_11505 PF07726 ATPase family associated with various cellular activities (AAA) XB05_11505 PF17863 AAA lid domain XB05_11510 PF03958 Bacterial type II/III secretion system short domain XB05_11510 PF00263 Bacterial type II and III secretion system protein XB05_11510 PF11741 AMIN domain XB05_11510 PF07660 Secretin and TonB N terminus short domain XB05_11535 PF17092 Penicillin-binding protein OB-like domain XB05_11535 PF00912 Transglycosylase XB05_11535 PF00905 Penicillin binding protein transpeptidase domain XB05_11545 PF00285 Citrate synthase, C-terminal domain XB05_11550 PF01197 Ribosomal protein L31 XB05_11555 PF01156 Inosine-uridine preferring nucleoside hydrolase XB05_11560 PF00271 Helicase conserved C-terminal domain XB05_11560 PF00270 DEAD/DEAH box helicase XB05_11560 PF17191 RecG wedge domain XB05_11565 PF01042 Endoribonuclease L-PSP XB05_11570 PF08666 SAF domain XB05_11570 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus XB05_11575 PF03573 outer membrane porin, OprD family XB05_11580 PF13378 Enolase C-terminal domain-like XB05_11580 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XB05_11585 PF07690 Major Facilitator Superfamily XB05_11590 PF00171 Aldehyde dehydrogenase family XB05_11595 PF00701 Dihydrodipicolinate synthetase family XB05_11600 PF03466 LysR substrate binding domain XB05_11600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_11605 PF02824 TGS domain XB05_11605 PF04607 Region found in RelA / SpoT proteins XB05_11605 PF13291 ACT domain XB05_11610 PF01192 RNA polymerase Rpb6 XB05_11615 PF00625 Guanylate kinase XB05_11620 PF03755 YicC-like family, N-terminal region XB05_11620 PF08340 Domain of unknown function (DUF1732) XB05_11625 PF03725 3' exoribonuclease family, domain 2 XB05_11625 PF01138 3' exoribonuclease family, domain 1 XB05_11635 PF01725 Ham1 family XB05_11640 PF06969 HemN C-terminal domain XB05_11640 PF04055 Radical SAM superfamily XB05_11655 PF00557 Metallopeptidase family M24 XB05_11665 PF00557 Metallopeptidase family M24 XB05_11665 PF05195 Aminopeptidase P, N-terminal domain XB05_11670 PF03695 Uncharacterised protein family (UPF0149) XB05_11680 PF05164 Cell division protein ZapA XB05_11685 PF01812 5-formyltetrahydrofolate cyclo-ligase family XB05_11695 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) XB05_11705 PF13369 Transglutaminase-like superfamily XB05_11710 PF00301 Rubredoxin XB05_11715 PF02581 Thiamine monophosphate synthase XB05_11725 PF00202 Aminotransferase class-III XB05_11730 PF17874 MalT-like TPR region XB05_11730 PF00196 Bacterial regulatory proteins, luxR family XB05_11735 PF01494 FAD binding domain XB05_11740 PF00127 Copper binding proteins, plastocyanin/azurin family XB05_11745 PF00155 Aminotransferase class I and II XB05_11755 PF00034 Cytochrome c XB05_11755 PF13442 Cytochrome C oxidase, cbb3-type, subunit III XB05_11760 PF01593 Flavin containing amine oxidoreductase XB05_11775 PF00202 Aminotransferase class-III XB05_11780 PF00520 Ion transport protein XB05_11780 PF00027 Cyclic nucleotide-binding domain XB05_11805 PF01569 PAP2 superfamily XB05_11810 PF01062 Bestrophin, RFP-TM, chloride channel XB05_11820 PF01225 Mur ligase family, catalytic domain XB05_11820 PF08245 Mur ligase middle domain XB05_11820 PF02875 Mur ligase family, glutamate ligase domain XB05_11830 PF00365 Phosphofructokinase XB05_11840 PF03030 Inorganic H+ pyrophosphatase XB05_11850 PF00719 Inorganic pyrophosphatase XB05_11860 PF00593 TonB dependent receptor XB05_11860 PF07715 TonB-dependent Receptor Plug Domain XB05_11865 PF12833 Helix-turn-helix domain XB05_11870 PF18500 CadC C-terminal domain 1 XB05_11870 PF00486 Transcriptional regulatory protein, C terminal XB05_11875 PF13667 ThiC-associated domain XB05_11875 PF01964 Radical SAM ThiC family XB05_11880 PF00593 TonB dependent receptor XB05_11880 PF07715 TonB-dependent Receptor Plug Domain XB05_11885 PF07676 WD40-like Beta Propeller Repeat XB05_11885 PF00326 Prolyl oligopeptidase family XB05_11890 PF00672 HAMP domain XB05_11890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_11900 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain XB05_11900 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain XB05_11905 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XB05_11905 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XB05_11905 PF00205 Thiamine pyrophosphate enzyme, central domain XB05_11915 PF00291 Pyridoxal-phosphate dependent enzyme XB05_11920 PF08502 LeuA allosteric (dimerisation) domain XB05_11920 PF00682 HMGL-like XB05_11925 PF00180 Isocitrate/isopropylmalate dehydrogenase XB05_11930 PF00694 Aconitase C-terminal domain XB05_11935 PF00330 Aconitase family (aconitate hydratase) XB05_11940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_11945 PF17151 Periplasmic sensor domain XB05_11945 PF00990 Diguanylate cyclase, GGDEF domain XB05_11960 PF02321 Outer membrane efflux protein XB05_11970 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) XB05_11975 PF03279 Bacterial lipid A biosynthesis acyltransferase XB05_12000 PF00390 Malic enzyme, N-terminal domain XB05_12000 PF03949 Malic enzyme, NAD binding domain XB05_12000 PF01515 Phosphate acetyl/butaryl transferase XB05_12005 PF00375 Sodium:dicarboxylate symporter family XB05_12015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_12015 PF00512 His Kinase A (phospho-acceptor) domain XB05_12020 PF07690 Major Facilitator Superfamily XB05_12030 PF03466 LysR substrate binding domain XB05_12030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_12045 PF00248 Aldo/keto reductase family XB05_12050 PF00196 Bacterial regulatory proteins, luxR family XB05_12050 PF00072 Response regulator receiver domain XB05_12060 PF00512 His Kinase A (phospho-acceptor) domain XB05_12060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_12060 PF08521 Two-component sensor kinase N-terminal XB05_12065 PF00486 Transcriptional regulatory protein, C terminal XB05_12065 PF00072 Response regulator receiver domain XB05_12075 PF03600 Citrate transporter XB05_12080 PF00106 short chain dehydrogenase XB05_12085 PF00356 Bacterial regulatory proteins, lacI family XB05_12100 PF00128 Alpha amylase, catalytic domain XB05_12115 PF03193 RsgA GTPase XB05_12145 PF00892 EamA-like transporter family XB05_12150 PF02567 Phenazine biosynthesis-like protein XB05_12155 PF00392 Bacterial regulatory proteins, gntR family XB05_12155 PF00155 Aminotransferase class I and II XB05_12160 PF00756 Putative esterase XB05_12165 PF04828 Glutathione-dependent formaldehyde-activating enzyme XB05_12170 PF08240 Alcohol dehydrogenase GroES-like domain XB05_12170 PF00107 Zinc-binding dehydrogenase XB05_12175 PF02583 Metal-sensitive transcriptional repressor XB05_12180 PF13426 PAS domain XB05_12180 PF13581 Histidine kinase-like ATPase domain XB05_12180 PF07536 HWE histidine kinase XB05_12195 PF00486 Transcriptional regulatory protein, C terminal XB05_12195 PF00072 Response regulator receiver domain XB05_12200 PF00672 HAMP domain XB05_12200 PF00512 His Kinase A (phospho-acceptor) domain XB05_12200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_12205 PF04107 Glutamate-cysteine ligase family 2(GCS2) XB05_12220 PF01926 50S ribosome-binding GTPase XB05_12225 PF00034 Cytochrome c XB05_12230 PF01323 DSBA-like thioredoxin domain XB05_12235 PF01323 DSBA-like thioredoxin domain XB05_12245 PF02028 BCCT, betaine/carnitine/choline family transporter XB05_12250 PF00171 Aldehyde dehydrogenase family XB05_12255 PF00732 GMC oxidoreductase XB05_12255 PF05199 GMC oxidoreductase XB05_12260 PF00593 TonB dependent receptor XB05_12260 PF07715 TonB-dependent Receptor Plug Domain XB05_12265 PF01464 Transglycosylase SLT domain XB05_12265 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain XB05_12275 PF07715 TonB-dependent Receptor Plug Domain XB05_12275 PF00593 TonB dependent receptor XB05_12280 PF01522 Polysaccharide deacetylase XB05_12285 PF00462 Glutaredoxin XB05_12300 PF01979 Amidohydrolase family XB05_12305 PF01979 Amidohydrolase family XB05_12330 PF02645 Uncharacterised protein, DegV family COG1307 XB05_12340 PF00586 AIR synthase related protein, N-terminal domain XB05_12340 PF02769 AIR synthase related protein, C-terminal domain XB05_12345 PF01029 NusB family XB05_12350 PF00885 6,7-dimethyl-8-ribityllumazine synthase XB05_12355 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase XB05_12355 PF00925 GTP cyclohydrolase II XB05_12360 PF00677 Lumazine binding domain XB05_12370 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region XB05_12370 PF01872 RibD C-terminal domain XB05_12380 PF03477 ATP cone domain XB05_12385 PF00464 Serine hydroxymethyltransferase XB05_12395 PF12848 ABC transporter XB05_12395 PF00005 ABC transporter XB05_12400 PF01327 Polypeptide deformylase XB05_12420 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) XB05_12425 PF01270 Glycosyl hydrolases family 8 XB05_12430 PF03170 Bacterial cellulose synthase subunit XB05_12435 PF07238 PilZ domain XB05_12435 PF03552 Cellulose synthase XB05_12435 PF00535 Glycosyl transferase family 2 XB05_12450 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain XB05_12450 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family XB05_12485 PF07715 TonB-dependent Receptor Plug Domain XB05_12485 PF00593 TonB dependent receptor XB05_12495 PF07702 UTRA domain XB05_12495 PF00392 Bacterial regulatory proteins, gntR family XB05_12505 PF03958 Bacterial type II/III secretion system short domain XB05_12505 PF00263 Bacterial type II and III secretion system protein XB05_12515 PF10741 Type II secretion system (T2SS), protein M subtype b XB05_12520 PF05137 Fimbrial assembly protein (PilN) XB05_12525 PF03934 Type II secretion system (T2SS), protein K XB05_12535 PF07963 Prokaryotic N-terminal methylation motif XB05_12540 PF12019 Type II transport protein GspH XB05_12545 PF08334 Type II secretion system (T2SS), protein G XB05_12550 PF00482 Type II secretion system (T2SS), protein F XB05_12555 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XB05_12555 PF00437 Type II/IV secretion system protein XB05_12560 PF04151 Bacterial pre-peptidase C-terminal domain XB05_12560 PF00082 Subtilase family XB05_12565 PF13018 Extended Signal Peptide of Type V secretion system XB05_12565 PF03895 YadA-like membrane anchor domain XB05_12565 PF05658 Head domain of trimeric autotransporter adhesin XB05_12565 PF05662 Coiled stalk of trimeric autotransporter adhesin XB05_12570 PF04151 Bacterial pre-peptidase C-terminal domain XB05_12570 PF00082 Subtilase family XB05_12575 PF03895 YadA-like membrane anchor domain XB05_12575 PF13018 Extended Signal Peptide of Type V secretion system XB05_12575 PF05662 Coiled stalk of trimeric autotransporter adhesin XB05_12575 PF05658 Head domain of trimeric autotransporter adhesin XB05_12580 PF02769 AIR synthase related protein, C-terminal domain XB05_12580 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain XB05_12580 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal XB05_12585 PF10411 Disulfide bond isomerase protein N-terminus XB05_12585 PF13098 Thioredoxin-like domain XB05_12590 PF02899 Phage integrase, N-terminal SAM-like domain XB05_12590 PF00589 Phage integrase family XB05_12600 PF03739 Lipopolysaccharide export system permease LptF/LptG XB05_12610 PF02789 Cytosol aminopeptidase family, N-terminal domain XB05_12610 PF00883 Cytosol aminopeptidase family, catalytic domain XB05_12625 PF08264 Anticodon-binding domain of tRNA XB05_12625 PF10458 Valyl tRNA synthetase tRNA binding arm XB05_12625 PF00133 tRNA synthetases class I (I, L, M and V) XB05_12630 PF00544 Pectate lyase XB05_12645 PF01066 CDP-alcohol phosphatidyltransferase XB05_12655 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XB05_12655 PF04073 Aminoacyl-tRNA editing domain XB05_12655 PF03129 Anticodon binding domain XB05_12670 PF02405 Permease MlaE XB05_12675 PF00005 ABC transporter XB05_12680 PF03886 ABC-type transport auxiliary lipoprotein component XB05_12680 PF02470 MlaD protein XB05_12700 PF14307 Glycosyltransferase WbsX XB05_12700 PF05045 Rhamnan synthesis protein F XB05_12705 PF01144 Coenzyme A transferase XB05_12710 PF01144 Coenzyme A transferase XB05_12715 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XB05_12715 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XB05_12715 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XB05_12715 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XB05_12720 PF00483 Nucleotidyl transferase XB05_12720 PF01050 Mannose-6-phosphate isomerase XB05_12725 PF04321 RmlD substrate binding domain XB05_12730 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase XB05_12735 PF00483 Nucleotidyl transferase XB05_12740 PF16363 GDP-mannose 4,6 dehydratase XB05_12745 PF01012 Electron transfer flavoprotein domain XB05_12750 PF00766 Electron transfer flavoprotein FAD-binding domain XB05_12750 PF01012 Electron transfer flavoprotein domain XB05_12760 PF01040 UbiA prenyltransferase family XB05_12765 PF01565 FAD binding domain XB05_12765 PF04030 D-arabinono-1,4-lactone oxidase XB05_12770 PF00106 short chain dehydrogenase XB05_12775 PF01370 NAD dependent epimerase/dehydratase family XB05_12795 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster XB05_12795 PF07992 Pyridine nucleotide-disulphide oxidoreductase XB05_12815 PF00535 Glycosyl transferase family 2 XB05_12820 PF00535 Glycosyl transferase family 2 XB05_12825 PF00398 Ribosomal RNA adenine dimethylase XB05_12830 PF00005 ABC transporter XB05_12840 PF01053 Cys/Met metabolism PLP-dependent enzyme XB05_12845 PF00571 CBS domain XB05_12845 PF00291 Pyridoxal-phosphate dependent enzyme XB05_12865 PF00437 Type II/IV secretion system protein XB05_12870 PF14497 Glutathione S-transferase, C-terminal domain XB05_12870 PF02798 Glutathione S-transferase, N-terminal domain XB05_12880 PF00270 DEAD/DEAH box helicase XB05_12880 PF00271 Helicase conserved C-terminal domain XB05_12890 PF07715 TonB-dependent Receptor Plug Domain XB05_12890 PF00593 TonB dependent receptor XB05_12895 PF01242 6-pyruvoyl tetrahydropterin synthase XB05_12910 PF13185 GAF domain XB05_12920 PF00756 Putative esterase XB05_12925 PF07715 TonB-dependent Receptor Plug Domain XB05_12925 PF00593 TonB dependent receptor XB05_12930 PF13419 Haloacid dehalogenase-like hydrolase XB05_12935 PF00817 impB/mucB/samB family XB05_12935 PF11799 impB/mucB/samB family C-terminal domain XB05_12940 PF07977 FabA-like domain XB05_12945 PF00109 Beta-ketoacyl synthase, N-terminal domain XB05_12945 PF02801 Beta-ketoacyl synthase, C-terminal domain XB05_12955 PF01432 Peptidase family M3 XB05_12970 PF07731 Multicopper oxidase XB05_12970 PF00394 Multicopper oxidase XB05_12970 PF07732 Multicopper oxidase XB05_12975 PF05275 Copper resistance protein B precursor (CopB) XB05_12980 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XB05_12995 PF01380 SIS domain XB05_13000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XB05_13005 PF00005 ABC transporter XB05_13010 PF12704 MacB-like periplasmic core domain XB05_13010 PF00005 ABC transporter XB05_13010 PF02687 FtsX-like permease family XB05_13015 PF00005 ABC transporter XB05_13015 PF02687 FtsX-like permease family XB05_13015 PF12704 MacB-like periplasmic core domain XB05_13020 PF00072 Response regulator receiver domain XB05_13020 PF02954 Bacterial regulatory protein, Fis family XB05_13020 PF00158 Sigma-54 interaction domain XB05_13025 PF00512 His Kinase A (phospho-acceptor) domain XB05_13025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_13035 PF00132 Bacterial transferase hexapeptide (six repeats) XB05_13035 PF14602 Hexapeptide repeat of succinyl-transferase XB05_13035 PF12804 MobA-like NTP transferase domain XB05_13045 PF01817 Chorismate mutase type II XB05_13050 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain XB05_13050 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain XB05_13055 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XB05_13055 PF02874 ATP synthase alpha/beta family, beta-barrel domain XB05_13060 PF00231 ATP synthase XB05_13065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XB05_13065 PF00306 ATP synthase alpha/beta chain, C terminal domain XB05_13065 PF02874 ATP synthase alpha/beta family, beta-barrel domain XB05_13070 PF00213 ATP synthase delta (OSCP) subunit XB05_13075 PF00430 ATP synthase B/B' CF(0) XB05_13080 PF00137 ATP synthase subunit C XB05_13085 PF00119 ATP synthase A chain XB05_13100 PF07992 Pyridine nucleotide-disulphide oxidoreductase XB05_13100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XB05_13110 PF00364 Biotin-requiring enzyme XB05_13110 PF02817 e3 binding domain XB05_13110 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XB05_13135 PF03180 NLPA lipoprotein XB05_13140 PF00528 Binding-protein-dependent transport system inner membrane component XB05_13145 PF09383 NIL domain XB05_13145 PF00005 ABC transporter XB05_13150 PF00892 EamA-like transporter family XB05_13155 PF04461 Protein of unknown function (DUF520) XB05_13165 PF00072 Response regulator receiver domain XB05_13165 PF00989 PAS fold XB05_13165 PF01627 Hpt domain XB05_13165 PF18415 Histidine kinase receptor ArcB trans-membrane domain XB05_13165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_13165 PF00512 His Kinase A (phospho-acceptor) domain XB05_13185 PF00849 RNA pseudouridylate synthase XB05_13185 PF01479 S4 domain XB05_13190 PF08468 Methyltransferase small domain N-terminal XB05_13190 PF05175 Methyltransferase small domain XB05_13200 PF07995 Glucose / Sorbosone dehydrogenase XB05_13210 PF00989 PAS fold XB05_13210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_13210 PF00512 His Kinase A (phospho-acceptor) domain XB05_13230 PF01168 Alanine racemase, N-terminal domain XB05_13230 PF00842 Alanine racemase, C-terminal domain XB05_13235 PF01266 FAD dependent oxidoreductase XB05_13240 PF01037 Lrp/AsnC ligand binding domain XB05_13250 PF01641 SelR domain XB05_13255 PF01618 MotA/TolQ/ExbB proton channel family XB05_13260 PF13677 Membrane MotB of proton-channel complex MotA/MotB XB05_13260 PF00691 OmpA family XB05_13285 PF01061 ABC-2 type transporter XB05_13290 PF00005 ABC transporter XB05_13295 PF00999 Sodium/hydrogen exchanger family XB05_13310 PF02469 Fasciclin domain XB05_13315 PF03167 Uracil DNA glycosylase superfamily XB05_13325 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XB05_13335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_13335 PF03466 LysR substrate binding domain XB05_13340 PF03358 NADPH-dependent FMN reductase XB05_13345 PF00248 Aldo/keto reductase family XB05_13355 PF05649 Peptidase family M13 XB05_13355 PF01431 Peptidase family M13 XB05_13365 PF08889 WbqC-like protein family XB05_13370 PF00535 Glycosyl transferase family 2 XB05_13375 PF13649 Methyltransferase domain XB05_13385 PF00892 EamA-like transporter family XB05_13395 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XB05_13415 PF13520 Amino acid permease XB05_13425 PF04397 LytTr DNA-binding domain XB05_13425 PF00072 Response regulator receiver domain XB05_13430 PF06580 Histidine kinase XB05_13430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_13430 PF02743 Cache domain XB05_13430 PF00672 HAMP domain XB05_13445 PF05974 Domain of unknown function (DUF892) XB05_13450 PF05067 Manganese containing catalase XB05_13460 PF08448 PAS fold XB05_13460 PF01739 CheR methyltransferase, SAM binding domain XB05_13460 PF03705 CheR methyltransferase, all-alpha domain XB05_13460 PF01339 CheB methylesterase XB05_13475 PF02954 Bacterial regulatory protein, Fis family XB05_13475 PF00072 Response regulator receiver domain XB05_13475 PF00158 Sigma-54 interaction domain XB05_13500 PF08240 Alcohol dehydrogenase GroES-like domain XB05_13500 PF13823 Alcohol dehydrogenase GroES-associated XB05_13500 PF00107 Zinc-binding dehydrogenase XB05_13520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_13520 PF03466 LysR substrate binding domain XB05_13525 PF07690 Major Facilitator Superfamily XB05_13560 PF00005 ABC transporter XB05_13570 PF03466 LysR substrate binding domain XB05_13570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_13575 PF01042 Endoribonuclease L-PSP XB05_13590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_13590 PF02203 Tar ligand binding domain homologue XB05_13590 PF00672 HAMP domain XB05_13620 PF01740 STAS domain XB05_13620 PF00916 Sulfate permease family XB05_13625 PF00654 Voltage gated chloride channel XB05_13630 PF00557 Metallopeptidase family M24 XB05_13640 PF07690 Major Facilitator Superfamily XB05_13645 PF00440 Bacterial regulatory proteins, tetR family XB05_13650 PF03960 ArsC family XB05_13655 PF03358 NADPH-dependent FMN reductase XB05_13660 PF02040 Arsenical pump membrane protein XB05_13710 PF01555 DNA methylase XB05_13940 PF03979 Sigma-70 factor, region 1.1 XB05_13940 PF00140 Sigma-70 factor, region 1.2 XB05_13940 PF04542 Sigma-70 region 2 XB05_13940 PF04546 Sigma-70, non-essential region XB05_13940 PF04545 Sigma-70, region 4 XB05_13940 PF04539 Sigma-70 region 3 XB05_13945 PF02580 D-Tyr-tRNA(Tyr) deacylase XB05_13950 PF03279 Bacterial lipid A biosynthesis acyltransferase XB05_13960 PF00925 GTP cyclohydrolase II XB05_13980 PF00535 Glycosyl transferase family 2 XB05_13995 PF01189 16S rRNA methyltransferase RsmB/F XB05_13995 PF01029 NusB family XB05_14000 PF00551 Formyl transferase XB05_14000 PF02911 Formyl transferase, C-terminal domain XB05_14005 PF01327 Polypeptide deformylase XB05_14010 PF01476 LysM domain XB05_14015 PF02481 DNA recombination-mediator protein A XB05_14015 PF17782 DprA winged helix domain XB05_14020 PF04361 Protein of unknown function (DUF494) XB05_14025 PF07963 Prokaryotic N-terminal methylation motif XB05_14025 PF00114 Pilin (bacterial filament) XB05_14035 PF01131 DNA topoisomerase XB05_14035 PF13368 Topoisomerase C-terminal repeat XB05_14035 PF01751 Toprim domain XB05_14040 PF01300 Telomere recombination XB05_14065 PF01343 Peptidase family S49 XB05_14070 PF01554 MatE XB05_14085 PF18074 Primosomal protein N C-terminal domain XB05_14085 PF17764 3′ DNA-binding domain (3′BD) XB05_14085 PF00271 Helicase conserved C-terminal domain XB05_14085 PF00270 DEAD/DEAH box helicase XB05_14085 PF18319 PriA DNA helicase Cys-rich region (CRR) domain XB05_14090 PF00043 Glutathione S-transferase, C-terminal domain XB05_14090 PF13417 Glutathione S-transferase, N-terminal domain XB05_14105 PF07992 Pyridine nucleotide-disulphide oxidoreductase XB05_14110 PF03458 UPF0126 domain XB05_14115 PF04542 Sigma-70 region 2 XB05_14115 PF04545 Sigma-70, region 4 XB05_14120 PF03167 Uracil DNA glycosylase superfamily XB05_14125 PF01339 CheB methylesterase XB05_14125 PF00072 Response regulator receiver domain XB05_14130 PF18075 FtsX extracellular domain XB05_14135 PF00005 ABC transporter XB05_14140 PF12300 ATP-dependent RNA helicase RhlB XB05_14140 PF00271 Helicase conserved C-terminal domain XB05_14140 PF00270 DEAD/DEAH box helicase XB05_14145 PF00085 Thioredoxin XB05_14150 PF07498 Rho termination factor, N-terminal domain XB05_14150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XB05_14150 PF07497 Rho termination factor, RNA-binding domain XB05_14160 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) XB05_14165 PF03971 Monomeric isocitrate dehydrogenase XB05_14180 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term XB05_14180 PF14489 QueF-like protein XB05_14185 PF07687 Peptidase dimerisation domain XB05_14185 PF01546 Peptidase family M20/M25/M40 XB05_14190 PF13533 Biotin-lipoyl like XB05_14195 PF00873 AcrB/AcrD/AcrF family XB05_14200 PF00873 AcrB/AcrD/AcrF family XB05_14205 PF07063 Domain of unknown function (DUF1338) XB05_14240 PF01427 D-ala-D-ala dipeptidase XB05_14260 PF01510 N-acetylmuramoyl-L-alanine amidase XB05_14270 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XB05_14270 PF13378 Enolase C-terminal domain-like XB05_14280 PF13520 Amino acid permease XB05_14295 PF05360 yiaA/B two helix domain XB05_14300 PF07995 Glucose / Sorbosone dehydrogenase XB05_14305 PF14310 Fibronectin type III-like domain XB05_14305 PF01915 Glycosyl hydrolase family 3 C-terminal domain XB05_14305 PF00933 Glycosyl hydrolase family 3 N terminal domain XB05_14310 PF02152 Dihydroneopterin aldolase XB05_14320 PF01165 Ribosomal protein S21 XB05_14325 PF09424 Yqey-like protein XB05_14330 PF03631 Virulence factor BrkB XB05_14335 PF10410 DnaB-helicase binding domain of primase XB05_14335 PF08278 DNA primase DnaG DnaB-binding XB05_14335 PF08275 DNA primase catalytic core, N-terminal domain XB05_14335 PF01807 CHC2 zinc finger XB05_14345 PF13593 SBF-like CPA transporter family (DUF4137) XB05_14355 PF01040 UbiA prenyltransferase family XB05_14380 PF00510 Cytochrome c oxidase subunit III XB05_14385 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 XB05_14395 PF00115 Cytochrome C and Quinol oxidase polypeptide I XB05_14400 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XB05_14400 PF02790 Cytochrome C oxidase subunit II, transmembrane domain XB05_14410 PF18327 Proline utilization A proline dehydrogenase N-terminal domain XB05_14410 PF14850 DNA-binding domain of Proline dehydrogenase XB05_14410 PF00171 Aldehyde dehydrogenase family XB05_14410 PF01619 Proline dehydrogenase XB05_14440 PF00579 tRNA synthetases class I (W and Y) XB05_14445 PF01551 Peptidase family M23 XB05_14445 PF04225 Opacity-associated protein A LysM-like domain XB05_14450 PF03702 Anhydro-N-acetylmuramic acid kinase XB05_14460 PF07690 Major Facilitator Superfamily XB05_14465 PF03372 Endonuclease/Exonuclease/phosphatase family XB05_14470 PF00156 Phosphoribosyl transferase domain XB05_14480 PF13614 AAA domain XB05_14485 PF17762 HTH domain found in ParB protein XB05_14485 PF02195 ParB-like nuclease domain XB05_14500 PF01370 NAD dependent epimerase/dehydratase family XB05_14505 PF00535 Glycosyl transferase family 2 XB05_14520 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XB05_14520 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XB05_14520 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XB05_14520 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XB05_14525 PF00692 dUTPase XB05_14530 PF02441 Flavoprotein XB05_14530 PF04127 DNA / pantothenate metabolism flavoprotein XB05_14535 PF04002 RadC-like JAB domain XB05_14540 PF00750 tRNA synthetases class I (R) XB05_14540 PF03485 Arginyl tRNA synthetase N terminal domain XB05_14540 PF05746 DALR anticodon binding domain XB05_14555 PF00106 short chain dehydrogenase XB05_14560 PF01757 Acyltransferase family XB05_14565 PF03033 Glycosyltransferase family 28 N-terminal domain XB05_14570 PF00668 Condensation domain XB05_14570 PF00550 Phosphopantetheine attachment site XB05_14570 PF00975 Thioesterase domain XB05_14570 PF00550 Phosphopantetheine attachment site XB05_14570 PF00668 Condensation domain XB05_14570 PF00501 AMP-binding enzyme XB05_14570 PF00975 Thioesterase domain XB05_14570 PF13193 AMP-binding enzyme C-terminal domain XB05_14570 PF13193 AMP-binding enzyme C-terminal domain XB05_14570 PF00501 AMP-binding enzyme XB05_14575 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XB05_14575 PF17944 Arginine decarboxylase C-terminal helical extension XB05_14575 PF17810 Arginine decarboxylase helical bundle domain XB05_14580 PF17284 Spermidine synthase tetramerisation domain XB05_14605 PF00543 Nitrogen regulatory protein P-II XB05_14610 PF04380 Membrane fusogenic activity XB05_14640 PF00266 Aminotransferase class-V XB05_14665 PF01527 Transposase XB05_14720 PF12792 CSS motif domain associated with EAL XB05_14720 PF00563 EAL domain XB05_14725 PF00487 Fatty acid desaturase XB05_14730 PF00970 Oxidoreductase FAD-binding domain XB05_14730 PF00111 2Fe-2S iron-sulfur cluster binding domain XB05_14730 PF00175 Oxidoreductase NAD-binding domain XB05_14735 PF00440 Bacterial regulatory proteins, tetR family XB05_14775 PF08338 Domain of unknown function (DUF1731) XB05_14775 PF01370 NAD dependent epimerase/dehydratase family XB05_14780 PF00486 Transcriptional regulatory protein, C terminal XB05_14780 PF00072 Response regulator receiver domain XB05_14785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_14785 PF08521 Two-component sensor kinase N-terminal XB05_14785 PF00512 His Kinase A (phospho-acceptor) domain XB05_14805 PF00595 PDZ domain XB05_14825 PF01594 AI-2E family transporter XB05_14830 PF13419 Haloacid dehalogenase-like hydrolase XB05_14835 PF00883 Cytosol aminopeptidase family, catalytic domain XB05_14835 PF02789 Cytosol aminopeptidase family, N-terminal domain XB05_14845 PF08281 Sigma-70, region 4 XB05_14845 PF04542 Sigma-70 region 2 XB05_14865 PF00196 Bacterial regulatory proteins, luxR family XB05_14865 PF00072 Response regulator receiver domain XB05_14870 PF07730 Histidine kinase XB05_14875 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XB05_14880 PF00005 ABC transporter XB05_14900 PF00892 EamA-like transporter family XB05_14905 PF00892 EamA-like transporter family XB05_14920 PF00753 Metallo-beta-lactamase superfamily XB05_14925 PF00579 tRNA synthetases class I (W and Y) XB05_14930 PF05532 CsbD-like XB05_14945 PF00491 Arginase family XB05_14970 PF02223 Thymidylate kinase XB05_14985 PF03309 Type III pantothenate kinase XB05_14990 PF02237 Biotin protein ligase C terminal domain XB05_14990 PF03099 Biotin/lipoate A/B protein ligase family XB05_14990 PF08279 HTH domain XB05_15000 PF06167 Glucose-regulated metallo-peptidase M90 XB05_15015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_15015 PF00512 His Kinase A (phospho-acceptor) domain XB05_15015 PF00672 HAMP domain XB05_15020 PF00486 Transcriptional regulatory protein, C terminal XB05_15020 PF00072 Response regulator receiver domain XB05_15030 PF01207 Dihydrouridine synthase (Dus) XB05_15055 PF00199 Catalase XB05_15055 PF06628 Catalase-related immune-responsive XB05_15065 PF13307 Helicase C-terminal domain XB05_15065 PF06733 DEAD_2 XB05_15080 PF01488 Shikimate / quinate 5-dehydrogenase XB05_15080 PF18317 Shikimate 5'-dehydrogenase C-terminal domain XB05_15080 PF08501 Shikimate dehydrogenase substrate binding domain XB05_15105 PF02321 Outer membrane efflux protein XB05_15110 PF00873 AcrB/AcrD/AcrF family XB05_15115 PF00529 HlyD membrane-fusion protein of T1SS XB05_15115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XB05_15120 PF00672 HAMP domain XB05_15120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_15120 PF00512 His Kinase A (phospho-acceptor) domain XB05_15125 PF00072 Response regulator receiver domain XB05_15125 PF00486 Transcriptional regulatory protein, C terminal XB05_15130 PF07690 Major Facilitator Superfamily XB05_15135 PF00551 Formyl transferase XB05_15145 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XB05_15145 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XB05_15150 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XB05_15155 PF02146 Sir2 family XB05_15175 PF08386 TAP-like protein XB05_15175 PF00561 alpha/beta hydrolase fold XB05_15185 PF07690 Major Facilitator Superfamily XB05_15190 PF03466 LysR substrate binding domain XB05_15190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_15200 PF01026 TatD related DNase XB05_15205 PF03466 LysR substrate binding domain XB05_15205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_15210 PF00355 Rieske [2Fe-2S] domain XB05_15215 PF00111 2Fe-2S iron-sulfur cluster binding domain XB05_15225 PF01156 Inosine-uridine preferring nucleoside hydrolase XB05_15230 PF01425 Amidase XB05_15245 PF07690 Major Facilitator Superfamily XB05_15250 PF03466 LysR substrate binding domain XB05_15250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_15255 PF07687 Peptidase dimerisation domain XB05_15255 PF01546 Peptidase family M20/M25/M40 XB05_15260 PF00266 Aminotransferase class-V XB05_15275 PF01014 Uricase XB05_15275 PF09349 OHCU decarboxylase XB05_15280 PF13454 FAD-NAD(P)-binding XB05_15285 PF00576 HIUase/Transthyretin family XB05_15290 PF07308 Protein of unknown function (DUF1456) XB05_15300 PF00667 FAD binding domain XB05_15300 PF00258 Flavodoxin XB05_15300 PF00175 Oxidoreductase NAD-binding domain XB05_15305 PF00490 Delta-aminolevulinic acid dehydratase XB05_15325 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XB05_15325 PF00326 Prolyl oligopeptidase family XB05_15330 PF02798 Glutathione S-transferase, N-terminal domain XB05_15330 PF00043 Glutathione S-transferase, C-terminal domain XB05_15350 PF04820 Tryptophan halogenase XB05_15365 PF00005 ABC transporter XB05_15375 PF01381 Helix-turn-helix XB05_15385 PF01229 Glycosyl hydrolases family 39 XB05_15390 PF02583 Metal-sensitive transcriptional repressor XB05_15395 PF01545 Cation efflux family XB05_15400 PF00970 Oxidoreductase FAD-binding domain XB05_15400 PF00175 Oxidoreductase NAD-binding domain XB05_15400 PF00111 2Fe-2S iron-sulfur cluster binding domain XB05_15405 PF00005 ABC transporter XB05_15410 PF01061 ABC-2 type transporter XB05_15415 PF02558 Ketopantoate reductase PanE/ApbA XB05_15415 PF08546 Ketopantoate reductase PanE/ApbA C terminal XB05_15425 PF03061 Thioesterase superfamily XB05_15445 PF00268 Ribonucleotide reductase, small chain XB05_15450 PF00317 Ribonucleotide reductase, all-alpha domain XB05_15450 PF03477 ATP cone domain XB05_15450 PF02867 Ribonucleotide reductase, barrel domain XB05_15460 PF13607 Succinyl-CoA ligase like flavodoxin domain XB05_15460 PF00583 Acetyltransferase (GNAT) family XB05_15460 PF13380 CoA binding domain XB05_15465 PF00571 CBS domain XB05_15465 PF03448 MgtE intracellular N domain XB05_15465 PF01769 Divalent cation transporter XB05_15470 PF02254 TrkA-N domain XB05_15470 PF00999 Sodium/hydrogen exchanger family XB05_15475 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XB05_15475 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XB05_15480 PF00723 Glycosyl hydrolases family 15 XB05_15495 PF05166 YcgL domain XB05_15500 PF02801 Beta-ketoacyl synthase, C-terminal domain XB05_15500 PF00109 Beta-ketoacyl synthase, N-terminal domain XB05_15515 PF04820 Tryptophan halogenase XB05_15555 PF07977 FabA-like domain XB05_15560 PF01553 Acyltransferase XB05_15570 PF00550 Phosphopantetheine attachment site XB05_15575 PF04820 Tryptophan halogenase XB05_15605 PF01218 Coproporphyrinogen III oxidase XB05_15610 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XB05_15610 PF01612 3'-5' exonuclease XB05_15610 PF00476 DNA polymerase family A XB05_15610 PF01367 5'-3' exonuclease, C-terminal SAM fold XB05_15620 PF03793 PASTA domain XB05_15620 PF00069 Protein kinase domain XB05_15665 PF13361 UvrD-like helicase C-terminal domain XB05_15665 PF00580 UvrD/REP helicase N-terminal domain XB05_15680 PF13091 PLD-like domain XB05_15680 PF13396 Phospholipase_D-nuclease N-terminal XB05_15685 PF03466 LysR substrate binding domain XB05_15685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_15690 PF03737 Aldolase/RraA XB05_15695 PF04303 PrpF protein XB05_15700 PF04909 Amidohydrolase XB05_15705 PF00471 Ribosomal protein L33 XB05_15710 PF00830 Ribosomal L28 family XB05_15715 PF00873 AcrB/AcrD/AcrF family XB05_15720 PF00529 HlyD membrane-fusion protein of T1SS XB05_15720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XB05_15740 PF02527 rRNA small subunit methyltransferase G XB05_15745 PF16655 PhoD-like phosphatase, N-terminal domain XB05_15745 PF09423 PhoD-like phosphatase XB05_15755 PF01648 4'-phosphopantetheinyl transferase superfamily XB05_15760 PF04226 Transglycosylase associated protein XB05_15775 PF00480 ROK family XB05_15785 PF00639 PPIC-type PPIASE domain XB05_15785 PF09312 SurA N-terminal domain XB05_15795 PF00474 Sodium:solute symporter family XB05_15800 PF04341 Protein of unknown function, DUF485 XB05_15810 PF16177 Acetyl-coenzyme A synthetase N-terminus XB05_15810 PF00501 AMP-binding enzyme XB05_15810 PF13193 AMP-binding enzyme C-terminal domain XB05_15815 PF00072 Response regulator receiver domain XB05_15815 PF00196 Bacterial regulatory proteins, luxR family XB05_15840 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XB05_15840 PF04616 Glycosyl hydrolases family 43 XB05_15845 PF00248 Aldo/keto reductase family XB05_15860 PF01557 Fumarylacetoacetate (FAA) hydrolase family XB05_15865 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XB05_15865 PF13378 Enolase C-terminal domain-like XB05_15870 PF05336 L-rhamnose mutarotase XB05_15875 PF07690 Major Facilitator Superfamily XB05_15880 PF01614 Bacterial transcriptional regulator XB05_15880 PF09339 IclR helix-turn-helix domain XB05_15885 PF02659 Putative manganese efflux pump XB05_15890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_15890 PF00072 Response regulator receiver domain XB05_15890 PF09456 RcsC Alpha-Beta-Loop (ABL) XB05_15890 PF00512 His Kinase A (phospho-acceptor) domain XB05_15895 PF06165 Glycosyltransferase family 36 XB05_15895 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain XB05_15910 PF13360 PQQ-like domain XB05_15910 PF01011 PQQ enzyme repeat XB05_15910 PF13570 PQQ-like domain XB05_15930 PF04357 TamB, inner membrane protein subunit of TAM complex XB05_15935 PF17243 POTRA domain TamA domain 1 XB05_15935 PF01103 Surface antigen XB05_15940 PF02092 Glycyl-tRNA synthetase beta subunit XB05_15940 PF05746 DALR anticodon binding domain XB05_15945 PF02091 Glycyl-tRNA synthetase alpha subunit XB05_15950 PF00437 Type II/IV secretion system protein XB05_15955 PF00117 Glutamine amidotransferase class-I XB05_15955 PF00958 GMP synthase C terminal domain XB05_15965 PF00902 Sec-independent protein translocase protein (TatC) XB05_15970 PF02416 mttA/Hcf106 family XB05_15975 PF02416 mttA/Hcf106 family XB05_15985 PF00762 Ferrochelatase XB05_15990 PF12697 Alpha/beta hydrolase family XB05_16005 PF04381 Putative exonuclease, RdgC XB05_16010 PF01171 PP-loop family XB05_16020 PF00356 Bacterial regulatory proteins, lacI family XB05_16025 PF03648 Glycosyl hydrolase family 67 N-terminus XB05_16025 PF07488 Glycosyl hydrolase family 67 middle domain XB05_16025 PF07477 Glycosyl hydrolase family 67 C-terminus XB05_16035 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XB05_16035 PF13378 Enolase C-terminal domain-like XB05_16040 PF04616 Glycosyl hydrolases family 43 XB05_16040 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XB05_16045 PF14310 Fibronectin type III-like domain XB05_16045 PF07691 PA14 domain XB05_16045 PF01915 Glycosyl hydrolase family 3 C-terminal domain XB05_16045 PF00933 Glycosyl hydrolase family 3 N terminal domain XB05_16050 PF08125 Mannitol dehydrogenase C-terminal domain XB05_16050 PF01232 Mannitol dehydrogenase Rossmann domain XB05_16065 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XB05_16065 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XB05_16095 PF08450 SMP-30/Gluconolactonase/LRE-like region XB05_16100 PF00331 Glycosyl hydrolase family 10 XB05_16105 PF02837 Glycosyl hydrolases family 2, sugar binding domain XB05_16105 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XB05_16105 PF00703 Glycosyl hydrolases family 2 XB05_16105 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XB05_16105 PF16355 Domain of unknown function (DUF4982) XB05_16110 PF02614 Glucuronate isomerase XB05_16115 PF00331 Glycosyl hydrolase family 10 XB05_16115 PF03422 Carbohydrate binding module (family 6) XB05_16115 PF00553 Cellulose binding domain XB05_16135 PF04616 Glycosyl hydrolases family 43 XB05_16160 PF02801 Beta-ketoacyl synthase, C-terminal domain XB05_16160 PF00698 Acyl transferase domain XB05_16160 PF08240 Alcohol dehydrogenase GroES-like domain XB05_16160 PF16197 Ketoacyl-synthetase C-terminal extension XB05_16160 PF00109 Beta-ketoacyl synthase, N-terminal domain XB05_16160 PF08659 KR domain XB05_16160 PF00550 Phosphopantetheine attachment site XB05_16160 PF14765 Polyketide synthase dehydratase XB05_16165 PF01553 Acyltransferase XB05_16175 PF00356 Bacterial regulatory proteins, lacI family XB05_16190 PF04820 Tryptophan halogenase XB05_16200 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family XB05_16205 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) XB05_16210 PF04337 Protein of unknown function, DUF480 XB05_16220 PF04055 Radical SAM superfamily XB05_16220 PF06969 HemN C-terminal domain XB05_16265 PF13302 Acetyltransferase (GNAT) domain XB05_16270 PF00580 UvrD/REP helicase N-terminal domain XB05_16270 PF13361 UvrD-like helicase C-terminal domain XB05_16275 PF00265 Thymidine kinase XB05_16280 PF01590 GAF domain XB05_16280 PF00360 Phytochrome region XB05_16280 PF08446 PAS fold XB05_16280 PF00512 His Kinase A (phospho-acceptor) domain XB05_16280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_16285 PF04349 Periplasmic glucan biosynthesis protein, MdoG XB05_16295 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XB05_16295 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XB05_16295 PF06827 Zinc finger found in FPG and IleRS XB05_16325 PF03594 Benzoate membrane transport protein XB05_16330 PF00360 Phytochrome region XB05_16330 PF13426 PAS domain XB05_16330 PF08446 PAS fold XB05_16330 PF01590 GAF domain XB05_16335 PF01126 Heme oxygenase XB05_16340 PF07690 Major Facilitator Superfamily XB05_16345 PF01263 Aldose 1-epimerase XB05_16355 PF02810 SEC-C motif XB05_16360 PF01925 Sulfite exporter TauE/SafE XB05_16380 PF01227 GTP cyclohydrolase I XB05_16390 PF07869 Protein of unknown function (DUF1656) XB05_16395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XB05_16395 PF00529 HlyD membrane-fusion protein of T1SS XB05_16400 PF02321 Outer membrane efflux protein XB05_16410 PF00083 Sugar (and other) transporter XB05_16415 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family XB05_16420 PF13396 Phospholipase_D-nuclease N-terminal XB05_16420 PF13091 PLD-like domain XB05_16480 PF00849 RNA pseudouridylate synthase XB05_16510 PF09386 Antitoxin ParD XB05_16525 PF13538 UvrD-like helicase C-terminal domain XB05_16535 PF17946 RecC C-terminal domain XB05_16570 PF00005 ABC transporter XB05_16575 PF02405 Permease MlaE XB05_16580 PF02470 MlaD protein XB05_16585 PF05494 MlaC protein XB05_16595 PF04333 MlaA lipoprotein XB05_16600 PF00255 Glutathione peroxidase XB05_16610 PF02646 RmuC family XB05_16620 PF13520 Amino acid permease XB05_16625 PF07971 Glycosyl hydrolase family 92 XB05_16625 PF17678 Glycosyl hydrolase family 92 N-terminal domain XB05_16640 PF00990 Diguanylate cyclase, GGDEF domain XB05_16645 PF05651 Putative sugar diacid recognition XB05_16645 PF17853 GGDEF-like domain XB05_16645 PF13556 PucR C-terminal helix-turn-helix domain XB05_16650 PF02595 Glycerate kinase family XB05_16655 PF07690 Major Facilitator Superfamily XB05_16670 PF17785 PUA-like domain XB05_16670 PF10672 S-adenosylmethionine-dependent methyltransferase XB05_16675 PF03741 Integral membrane protein TerC family XB05_16680 PF01694 Rhomboid family XB05_16685 PF03009 Glycerophosphoryl diester phosphodiesterase family XB05_16695 PF01569 PAP2 superfamily XB05_16700 PF10396 GTP-binding protein TrmE N-terminus XB05_16700 PF12631 MnmE helical domain XB05_16700 PF01926 50S ribosome-binding GTPase XB05_16705 PF01522 Polysaccharide deacetylase XB05_16710 PF02096 60Kd inner membrane protein XB05_16710 PF14849 YidC periplasmic domain XB05_16715 PF00825 Ribonuclease P XB05_16720 PF00468 Ribosomal protein L34 XB05_16725 PF00308 Bacterial dnaA protein XB05_16725 PF08299 Bacterial dnaA protein helix-turn-helix XB05_16725 PF11638 DnaA N-terminal domain XB05_16730 PF02768 DNA polymerase III beta subunit, C-terminal domain XB05_16730 PF02767 DNA polymerase III beta subunit, central domain XB05_16730 PF00712 DNA polymerase III beta subunit, N-terminal domain XB05_16735 PF02463 RecF/RecN/SMC N terminal domain XB05_16740 PF18053 DNA gyrase B subunit insert domain XB05_16740 PF00986 DNA gyrase B subunit, carboxyl terminus XB05_16740 PF00204 DNA gyrase B XB05_16740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_16740 PF01751 Toprim domain XB05_16750 PF01435 Peptidase family M48 XB05_16760 PF03544 Gram-negative bacterial TonB protein C-terminal XB05_16765 PF01618 MotA/TolQ/ExbB proton channel family XB05_16770 PF02472 Biopolymer transport protein ExbD/TolR XB05_16775 PF02472 Biopolymer transport protein ExbD/TolR XB05_16780 PF02472 Biopolymer transport protein ExbD/TolR XB05_16785 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ XB05_16795 PF13396 Phospholipase_D-nuclease N-terminal XB05_16795 PF13091 PLD-like domain XB05_16800 PF04055 Radical SAM superfamily XB05_16810 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) XB05_16825 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XB05_16825 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XB05_16830 PF13180 PDZ domain XB05_16830 PF03572 Peptidase family S41 XB05_16835 PF01551 Peptidase family M23 XB05_16845 PF04389 Peptidase family M28 XB05_16855 PF00150 Cellulase (glycosyl hydrolase family 5) XB05_16860 PF00150 Cellulase (glycosyl hydrolase family 5) XB05_16865 PF00150 Cellulase (glycosyl hydrolase family 5) XB05_16870 PF08240 Alcohol dehydrogenase GroES-like domain XB05_16870 PF00107 Zinc-binding dehydrogenase XB05_16880 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster XB05_16880 PF07992 Pyridine nucleotide-disulphide oxidoreductase XB05_16885 PF01493 GXGXG motif XB05_16885 PF01645 Conserved region in glutamate synthase XB05_16885 PF04898 Glutamate synthase central domain XB05_16885 PF00310 Glutamine amidotransferases class-II XB05_16910 PF10091 Putative glucoamylase XB05_16910 PF06165 Glycosyltransferase family 36 XB05_16910 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain XB05_16940 PF00271 Helicase conserved C-terminal domain XB05_16940 PF09369 Domain of unknown function (DUF1998) XB05_16940 PF00270 DEAD/DEAH box helicase XB05_16945 PF03006 Haemolysin-III related XB05_16970 PF00106 short chain dehydrogenase XB05_16990 PF03466 LysR substrate binding domain XB05_16990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_17010 PF01638 HxlR-like helix-turn-helix XB05_17035 PF08281 Sigma-70, region 4 XB05_17035 PF04542 Sigma-70 region 2 XB05_17055 PF01638 HxlR-like helix-turn-helix XB05_17060 PF05532 CsbD-like XB05_17065 PF00512 His Kinase A (phospho-acceptor) domain XB05_17065 PF08448 PAS fold XB05_17065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_17065 PF13188 PAS domain XB05_17065 PF00072 Response regulator receiver domain XB05_17080 PF02868 Thermolysin metallopeptidase, alpha-helical domain XB05_17080 PF01447 Thermolysin metallopeptidase, catalytic domain XB05_17080 PF16485 Protealysin propeptide XB05_17090 PF00293 NUDIX domain XB05_17090 PF13344 Haloacid dehalogenase-like hydrolase XB05_17095 PF07859 alpha/beta hydrolase fold XB05_17105 PF00085 Thioredoxin XB05_17110 PF00083 Sugar (and other) transporter XB05_17110 PF08946 Osmosensory transporter coiled coil XB05_17155 PF07726 ATPase family associated with various cellular activities (AAA) XB05_17155 PF17863 AAA lid domain XB05_17180 PF06441 Epoxide hydrolase N terminus XB05_17190 PF00440 Bacterial regulatory proteins, tetR family XB05_17195 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain XB05_17200 PF00155 Aminotransferase class I and II XB05_17205 PF07715 TonB-dependent Receptor Plug Domain XB05_17205 PF00593 TonB dependent receptor XB05_17215 PF07883 Cupin domain XB05_17220 PF00171 Aldehyde dehydrogenase family XB05_17225 PF00107 Zinc-binding dehydrogenase XB05_17225 PF08240 Alcohol dehydrogenase GroES-like domain XB05_17240 PF02735 Ku70/Ku80 beta-barrel domain XB05_17245 PF04679 ATP dependent DNA ligase C terminal region XB05_17245 PF13298 DNA polymerase Ligase (LigD) XB05_17245 PF01068 ATP dependent DNA ligase domain XB05_17250 PF01070 FMN-dependent dehydrogenase XB05_17255 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family XB05_17260 PF07730 Histidine kinase XB05_17265 PF00196 Bacterial regulatory proteins, luxR family XB05_17265 PF00072 Response regulator receiver domain XB05_17280 PF00486 Transcriptional regulatory protein, C terminal XB05_17285 PF07055 Enoyl reductase FAD binding domain XB05_17285 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase XB05_17285 PF12241 Trans-2-enoyl-CoA reductase catalytic region XB05_17295 PF00294 pfkB family carbohydrate kinase XB05_17310 PF01095 Pectinesterase XB05_17405 PF02540 NAD synthase XB05_17405 PF00795 Carbon-nitrogen hydrolase XB05_17430 PF11896 Domain of unknown function (DUF3416) XB05_17430 PF00128 Alpha amylase, catalytic domain XB05_17435 PF00128 Alpha amylase, catalytic domain XB05_17435 PF16657 Maltogenic Amylase, C-terminal domain XB05_17440 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XB05_17440 PF00128 Alpha amylase, catalytic domain XB05_17440 PF02806 Alpha amylase, C-terminal all-beta domain XB05_17465 PF00248 Aldo/keto reductase family XB05_17470 PF13472 GDSL-like Lipase/Acylhydrolase family XB05_17475 PF00135 Carboxylesterase family XB05_17480 PF07859 alpha/beta hydrolase fold XB05_17480 PF13472 GDSL-like Lipase/Acylhydrolase family XB05_17490 PF03480 Bacterial extracellular solute-binding protein, family 7 XB05_17500 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component XB05_17505 PF04616 Glycosyl hydrolases family 43 XB05_17505 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XB05_17510 PF00356 Bacterial regulatory proteins, lacI family XB05_17515 PF04962 KduI/IolB family XB05_17530 PF00657 GDSL-like Lipase/Acylhydrolase XB05_17540 PF06745 KaiC XB05_17555 PF00351 Biopterin-dependent aromatic amino acid hydroxylase XB05_17560 PF01037 Lrp/AsnC ligand binding domain XB05_17565 PF00593 TonB dependent receptor XB05_17565 PF07660 Secretin and TonB N terminus short domain XB05_17565 PF07715 TonB-dependent Receptor Plug Domain XB05_17570 PF01734 Patatin-like phospholipase XB05_17580 PF00005 ABC transporter XB05_17595 PF00005 ABC transporter XB05_17595 PF00571 CBS domain XB05_17600 PF00528 Binding-protein-dependent transport system inner membrane component XB05_17610 PF12867 DinB superfamily XB05_17610 PF03781 Sulfatase-modifying factor enzyme 1 XB05_17615 PF10017 Histidine-specific methyltransferase, SAM-dependent XB05_17645 PF10609 NUBPL iron-transfer P-loop NTPase XB05_17645 PF01883 Iron-sulfur cluster assembly protein XB05_17655 PF04264 YceI-like domain XB05_17660 PF13091 PLD-like domain XB05_17665 PF03061 Thioesterase superfamily XB05_17685 PF01161 Phosphatidylethanolamine-binding protein XB05_17695 PF02673 Bacitracin resistance protein BacA XB05_17700 PF00120 Glutamine synthetase, catalytic domain XB05_17700 PF03951 Glutamine synthetase, beta-Grasp domain XB05_17705 PF00543 Nitrogen regulatory protein P-II XB05_17710 PF00909 Ammonium Transporter Family XB05_17715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_17715 PF00512 His Kinase A (phospho-acceptor) domain XB05_17715 PF00989 PAS fold XB05_17720 PF02954 Bacterial regulatory protein, Fis family XB05_17720 PF00072 Response regulator receiver domain XB05_17720 PF00158 Sigma-54 interaction domain XB05_17725 PF00080 Copper/zinc superoxide dismutase (SODC) XB05_17730 PF00080 Copper/zinc superoxide dismutase (SODC) XB05_17745 PF02803 Thiolase, C-terminal domain XB05_17745 PF00108 Thiolase, N-terminal domain XB05_17765 PF02602 Uroporphyrinogen-III synthase HemD XB05_17785 PF00581 Rhodanese-like domain XB05_17790 PF02556 Preprotein translocase subunit SecB XB05_17795 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XB05_17795 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus XB05_17805 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XB05_17805 PF00205 Thiamine pyrophosphate enzyme, central domain XB05_17805 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XB05_17810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_17815 PF00072 Response regulator receiver domain XB05_17815 PF02954 Bacterial regulatory protein, Fis family XB05_17815 PF00158 Sigma-54 interaction domain XB05_17830 PF07690 Major Facilitator Superfamily XB05_17835 PF00588 SpoU rRNA Methylase family XB05_17850 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XB05_17850 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XB05_17855 PF13784 Fic/DOC family N-terminal XB05_17855 PF02661 Fic/DOC family XB05_17860 PF00561 alpha/beta hydrolase fold XB05_17865 PF03692 Putative zinc- or iron-chelating domain XB05_17870 PF00501 AMP-binding enzyme XB05_17880 PF00144 Beta-lactamase XB05_17885 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XB05_17915 PF03109 ABC1 family XB05_17920 PF01596 O-methyltransferase XB05_17925 PF00849 RNA pseudouridylate synthase XB05_17935 PF00472 RF-1 domain XB05_17945 PF01112 Asparaginase XB05_17950 PF01432 Peptidase family M3 XB05_17955 PF12706 Beta-lactamase superfamily domain XB05_17970 PF12833 Helix-turn-helix domain XB05_17975 PF00999 Sodium/hydrogen exchanger family XB05_17980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_17980 PF03466 LysR substrate binding domain XB05_17985 PF01274 Malate synthase XB05_17990 PF00463 Isocitrate lyase family XB05_17995 PF00563 EAL domain XB05_17995 PF00990 Diguanylate cyclase, GGDEF domain XB05_17995 PF13426 PAS domain XB05_18015 PF00326 Prolyl oligopeptidase family XB05_18020 PF00364 Biotin-requiring enzyme XB05_18020 PF02785 Biotin carboxylase C-terminal domain XB05_18020 PF00289 Biotin carboxylase, N-terminal domain XB05_18020 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XB05_18025 PF01039 Carboxyl transferase domain XB05_18030 PF02770 Acyl-CoA dehydrogenase, middle domain XB05_18030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XB05_18030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XB05_18085 PF02492 CobW/HypB/UreG, nucleotide-binding domain XB05_18085 PF07683 Cobalamin synthesis protein cobW C-terminal domain XB05_18100 PF03969 AFG1-like ATPase XB05_18110 PF01047 MarR family XB05_18115 PF02566 OsmC-like protein XB05_18120 PF12697 Alpha/beta hydrolase family XB05_18140 PF00248 Aldo/keto reductase family XB05_18145 PF00107 Zinc-binding dehydrogenase XB05_18145 PF16884 N-terminal domain of oxidoreductase XB05_18160 PF00849 RNA pseudouridylate synthase XB05_18170 PF08482 ATP-dependent helicase C-terminal XB05_18170 PF00271 Helicase conserved C-terminal domain XB05_18170 PF00270 DEAD/DEAH box helicase XB05_18170 PF04408 Helicase associated domain (HA2) XB05_18175 PF00672 HAMP domain XB05_18175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_18175 PF02203 Tar ligand binding domain homologue XB05_18190 PF02219 Methylenetetrahydrofolate reductase XB05_18195 PF02677 Epoxyqueuosine reductase QueH XB05_18200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_18200 PF03466 LysR substrate binding domain XB05_18205 PF03358 NADPH-dependent FMN reductase XB05_18215 PF08267 Cobalamin-independent synthase, N-terminal domain XB05_18215 PF01717 Cobalamin-independent synthase, Catalytic domain XB05_18225 PF05368 NmrA-like family XB05_18230 PF01638 HxlR-like helix-turn-helix XB05_18240 PF02203 Tar ligand binding domain homologue XB05_18240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_18240 PF00672 HAMP domain XB05_18340 PF13495 Phage integrase, N-terminal SAM-like domain XB05_18340 PF00589 Phage integrase family XB05_18345 PF00920 Dehydratase family XB05_18365 PF00132 Bacterial transferase hexapeptide (six repeats) XB05_18370 PF07690 Major Facilitator Superfamily XB05_18375 PF11871 Domain of unknown function (DUF3391) XB05_18375 PF01966 HD domain XB05_18395 PF00171 Aldehyde dehydrogenase family XB05_18405 PF01494 FAD binding domain XB05_18415 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XB05_18415 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XB05_18420 PF00230 Major intrinsic protein XB05_18425 PF01266 FAD dependent oxidoreductase XB05_18425 PF16901 C-terminal domain of alpha-glycerophosphate oxidase XB05_18430 PF00455 DeoR C terminal sensor domain XB05_18430 PF08220 DeoR-like helix-turn-helix domain XB05_18445 PF00355 Rieske [2Fe-2S] domain XB05_18450 PF01144 Coenzyme A transferase XB05_18455 PF01144 Coenzyme A transferase XB05_18460 PF02803 Thiolase, C-terminal domain XB05_18460 PF00108 Thiolase, N-terminal domain XB05_18465 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal XB05_18465 PF00775 Dioxygenase XB05_18470 PF00775 Dioxygenase XB05_18475 PF00206 Lyase XB05_18475 PF10397 Adenylosuccinate lyase C-terminus XB05_18480 PF12146 Serine aminopeptidase, S33 XB05_18485 PF02627 Carboxymuconolactone decarboxylase family XB05_18495 PF09339 IclR helix-turn-helix domain XB05_18495 PF01614 Bacterial transcriptional regulator XB05_18505 PF07859 alpha/beta hydrolase fold XB05_18510 PF10677 Protein of unknown function (DUF2490) XB05_18515 PF13932 GidA associated domain XB05_18515 PF01134 Glucose inhibited division protein A XB05_18525 PF00291 Pyridoxal-phosphate dependent enzyme XB05_18545 PF13649 Methyltransferase domain XB05_18555 PF12697 Alpha/beta hydrolase family XB05_18560 PF00155 Aminotransferase class I and II XB05_18565 PF06968 Biotin and Thiamin Synthesis associated domain XB05_18565 PF04055 Radical SAM superfamily XB05_18575 PF01040 UbiA prenyltransferase family XB05_18590 PF12794 Mechanosensitive ion channel inner membrane domain 1 XB05_18590 PF12795 Mechanosensitive ion channel porin domain XB05_18590 PF00924 Mechanosensitive ion channel XB05_18595 PF00884 Sulfatase XB05_18600 PF03109 ABC1 family XB05_18605 PF05661 Protein of unknown function (DUF808) XB05_18610 PF00990 Diguanylate cyclase, GGDEF domain XB05_18610 PF00072 Response regulator receiver domain XB05_18615 PF08323 Starch synthase catalytic domain XB05_18615 PF00534 Glycosyl transferases group 1 XB05_18620 PF00128 Alpha amylase, catalytic domain XB05_18620 PF02806 Alpha amylase, C-terminal all-beta domain XB05_18620 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XB05_18625 PF11941 Domain of unknown function (DUF3459) XB05_18625 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XB05_18625 PF00128 Alpha amylase, catalytic domain XB05_18630 PF02446 4-alpha-glucanotransferase XB05_18635 PF00128 Alpha amylase, catalytic domain XB05_18645 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XB05_18645 PF00128 Alpha amylase, catalytic domain XB05_18650 PF13460 NAD(P)H-binding XB05_18665 PF06903 VirK protein XB05_18670 PF02321 Outer membrane efflux protein XB05_18675 PF00440 Bacterial regulatory proteins, tetR family XB05_18685 PF00873 AcrB/AcrD/AcrF family XB05_18700 PF00270 DEAD/DEAH box helicase XB05_18700 PF00271 Helicase conserved C-terminal domain XB05_18710 PF00364 Biotin-requiring enzyme XB05_18710 PF02817 e3 binding domain XB05_18710 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XB05_18720 PF02779 Transketolase, pyrimidine binding domain XB05_18720 PF02780 Transketolase, C-terminal domain XB05_18725 PF00676 Dehydrogenase E1 component XB05_18735 PF03301 Tryptophan 2,3-dioxygenase XB05_18740 PF00854 POT family XB05_18750 PF01047 MarR family XB05_18755 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XB05_18760 PF04209 homogentisate 1,2-dioxygenase XB05_18775 PF03334 Na+/H+ antiporter subunit XB05_18780 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) XB05_18790 PF00361 Proton-conducting membrane transporter XB05_18795 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XB05_18800 PF00361 Proton-conducting membrane transporter XB05_18800 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter XB05_18800 PF13244 Domain of unknown function (DUF4040) XB05_18800 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XB05_18815 PF02868 Thermolysin metallopeptidase, alpha-helical domain XB05_18815 PF01447 Thermolysin metallopeptidase, catalytic domain XB05_18815 PF01483 Proprotein convertase P-domain XB05_18815 PF07504 Fungalysin/Thermolysin Propeptide Motif XB05_18845 PF01259 SAICAR synthetase XB05_18850 PF00684 DnaJ central domain XB05_18850 PF01556 DnaJ C terminal domain XB05_18850 PF00226 DnaJ domain XB05_18860 PF00834 Ribulose-phosphate 3 epimerase family XB05_18870 PF00781 Diacylglycerol kinase catalytic domain XB05_18875 PF04715 Anthranilate synthase component I, N terminal region XB05_18875 PF00425 chorismate binding enzyme XB05_18890 PF13356 Arm DNA-binding domain XB05_18890 PF00589 Phage integrase family XB05_18895 PF08281 Sigma-70, region 4 XB05_18895 PF04542 Sigma-70 region 2 XB05_18900 PF04773 FecR protein XB05_18900 PF16220 Domain of unknown function (DUF4880) XB05_18915 PF00034 Cytochrome c XB05_18915 PF03150 Di-haem cytochrome c peroxidase XB05_18920 PF00512 His Kinase A (phospho-acceptor) domain XB05_18920 PF08448 PAS fold XB05_18920 PF13188 PAS domain XB05_18920 PF00072 Response regulator receiver domain XB05_18920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_18925 PF00072 Response regulator receiver domain XB05_18930 PF00512 His Kinase A (phospho-acceptor) domain XB05_18930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_18930 PF01590 GAF domain XB05_18930 PF08446 PAS fold XB05_18930 PF00360 Phytochrome region XB05_18935 PF01609 Transposase DDE domain XB05_18935 PF05598 Transposase domain (DUF772) XB05_18970 PF04002 RadC-like JAB domain XB05_19000 PF00440 Bacterial regulatory proteins, tetR family XB05_19005 PF12146 Serine aminopeptidase, S33 XB05_19030 PF01527 Transposase XB05_19045 PF03797 Autotransporter beta-domain XB05_19045 PF00082 Subtilase family XB05_19045 PF12951 Passenger-associated-transport-repeat XB05_19055 PF01527 Transposase XB05_19060 PF02203 Tar ligand binding domain homologue XB05_19060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_19060 PF00672 HAMP domain XB05_19085 PF00486 Transcriptional regulatory protein, C terminal XB05_19085 PF00072 Response regulator receiver domain XB05_19090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_19090 PF00512 His Kinase A (phospho-acceptor) domain XB05_19110 PF13683 Integrase core domain XB05_19110 PF13276 HTH-like domain XB05_19115 PF01527 Transposase XB05_19135 PF02678 Pirin XB05_19135 PF17954 Quercetinase C-terminal cupin domain XB05_19160 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XB05_19180 PF01527 Transposase XB05_19185 PF13276 HTH-like domain XB05_19185 PF13683 Integrase core domain XB05_19190 PF00072 Response regulator receiver domain XB05_19190 PF00486 Transcriptional regulatory protein, C terminal XB05_19195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_19195 PF00512 His Kinase A (phospho-acceptor) domain XB05_19200 PF05658 Head domain of trimeric autotransporter adhesin XB05_19200 PF03895 YadA-like membrane anchor domain XB05_19200 PF05662 Coiled stalk of trimeric autotransporter adhesin XB05_19205 PF00082 Subtilase family XB05_19205 PF04151 Bacterial pre-peptidase C-terminal domain XB05_19210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_19210 PF03466 LysR substrate binding domain XB05_19215 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XB05_19215 PF13378 Enolase C-terminal domain-like XB05_19220 PF02426 Muconolactone delta-isomerase XB05_19225 PF00775 Dioxygenase XB05_19225 PF04444 Catechol dioxygenase N terminus XB05_19230 PF01494 FAD binding domain XB05_19240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_19240 PF03466 LysR substrate binding domain XB05_19250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XB05_19255 PF01557 Fumarylacetoacetate (FAA) hydrolase family XB05_19280 PF01494 FAD binding domain XB05_19290 PF13533 Biotin-lipoyl like XB05_19300 PF03466 LysR substrate binding domain XB05_19300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_19320 PF03466 LysR substrate binding domain XB05_19320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_19340 PF00580 UvrD/REP helicase N-terminal domain XB05_19340 PF13361 UvrD-like helicase C-terminal domain XB05_19345 PF00072 Response regulator receiver domain XB05_19345 PF00486 Transcriptional regulatory protein, C terminal XB05_19350 PF00512 His Kinase A (phospho-acceptor) domain XB05_19350 PF00072 Response regulator receiver domain XB05_19350 PF13188 PAS domain XB05_19350 PF08448 PAS fold XB05_19350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_19360 PF04151 Bacterial pre-peptidase C-terminal domain XB05_19360 PF00082 Subtilase family XB05_19415 PF00144 Beta-lactamase XB05_19430 PF00248 Aldo/keto reductase family XB05_19440 PF01527 Transposase XB05_19445 PF00117 Glutamine amidotransferase class-I XB05_19455 PF00591 Glycosyl transferase family, a/b domain XB05_19455 PF02885 Glycosyl transferase family, helical bundle domain XB05_19460 PF00218 Indole-3-glycerol phosphate synthase XB05_19470 PF00027 Cyclic nucleotide-binding domain XB05_19470 PF00325 Bacterial regulatory proteins, crp family XB05_19475 PF02675 S-adenosylmethionine decarboxylase XB05_19480 PF00893 Small Multidrug Resistance protein XB05_19485 PF03232 Ubiquinone biosynthesis protein COQ7 XB05_19490 PF00572 Ribosomal protein L13 XB05_19495 PF00380 Ribosomal protein S9/S16 XB05_19510 PF00293 NUDIX domain XB05_19520 PF00210 Ferritin-like domain XB05_19525 PF01627 Hpt domain XB05_19525 PF00512 His Kinase A (phospho-acceptor) domain XB05_19525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_19525 PF00672 HAMP domain XB05_19525 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XB05_19525 PF00072 Response regulator receiver domain XB05_19530 PF00072 Response regulator receiver domain XB05_19530 PF00486 Transcriptional regulatory protein, C terminal XB05_19550 PF01521 Iron-sulphur cluster biosynthesis XB05_19560 PF00293 NUDIX domain XB05_19560 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain XB05_19560 PF09297 NADH pyrophosphatase zinc ribbon domain XB05_19565 PF03186 CobD/Cbib protein XB05_19565 PF17113 Regulatory signalling modulator protein AmpE XB05_19590 PF07690 Major Facilitator Superfamily XB05_19595 PF12805 FUSC-like inner membrane protein yccS XB05_19600 PF02844 Phosphoribosylglycinamide synthetase, N domain XB05_19600 PF02843 Phosphoribosylglycinamide synthetase, C domain XB05_19600 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain XB05_19605 PF02142 MGS-like domain XB05_19605 PF01808 AICARFT/IMPCHase bienzyme XB05_19610 PF00818 Ice nucleation protein repeat XB05_19610 PF00818 Ice nucleation protein repeat XB05_19615 PF02954 Bacterial regulatory protein, Fis family XB05_19625 PF01381 Helix-turn-helix XB05_19650 PF00289 Biotin carboxylase, N-terminal domain XB05_19650 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XB05_19650 PF02785 Biotin carboxylase C-terminal domain XB05_19660 PF00364 Biotin-requiring enzyme XB05_19665 PF01220 Dehydroquinase class II XB05_19670 PF11412 Disulphide bond corrector protein DsbC XB05_19670 PF02683 Cytochrome C biogenesis protein transmembrane region XB05_19675 PF03091 CutA1 divalent ion tolerance protein XB05_19680 PF04231 Endonuclease I XB05_19685 PF00166 Chaperonin 10 Kd subunit XB05_19690 PF00118 TCP-1/cpn60 chaperonin family XB05_19695 PF07715 TonB-dependent Receptor Plug Domain XB05_19695 PF00593 TonB dependent receptor XB05_19700 PF00793 DAHP synthetase I family XB05_19705 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain XB05_19705 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain XB05_19725 PF16220 Domain of unknown function (DUF4880) XB05_19725 PF04773 FecR protein XB05_19730 PF00593 TonB dependent receptor XB05_19730 PF07660 Secretin and TonB N terminus short domain XB05_19730 PF07715 TonB-dependent Receptor Plug Domain XB05_19750 PF03710 Glutamate-ammonia ligase adenylyltransferase XB05_19750 PF08335 GlnD PII-uridylyltransferase XB05_19775 PF00881 Nitroreductase family XB05_19780 PF04264 YceI-like domain XB05_19795 PF16957 Malonate decarboxylase, alpha subunit, transporter XB05_19800 PF06857 Malonate decarboxylase delta subunit (MdcD) XB05_19805 PF01039 Carboxyl transferase domain XB05_19815 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG XB05_19820 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase XB05_19825 PF00109 Beta-ketoacyl synthase, N-terminal domain XB05_19825 PF02801 Beta-ketoacyl synthase, C-terminal domain XB05_19825 PF08659 KR domain XB05_19825 PF00550 Phosphopantetheine attachment site XB05_19825 PF16197 Ketoacyl-synthetase C-terminal extension XB05_19825 PF00698 Acyl transferase domain XB05_19835 PF00392 Bacterial regulatory proteins, gntR family XB05_19835 PF07729 FCD domain XB05_19840 PF13419 Haloacid dehalogenase-like hydrolase XB05_19870 PF07745 Glycosyl hydrolase family 53 XB05_19875 PF00456 Transketolase, thiamine diphosphate binding domain XB05_19875 PF17831 Pyruvate dehydrogenase E1 component middle domain XB05_19980 PF06719 AraC-type transcriptional regulator N-terminus XB05_19980 PF12833 Helix-turn-helix domain XB05_19985 PF00106 short chain dehydrogenase XB05_19990 PF04542 Sigma-70 region 2 XB05_19990 PF08281 Sigma-70, region 4 XB05_20000 PF00593 TonB dependent receptor XB05_20000 PF07715 TonB-dependent Receptor Plug Domain XB05_20020 PF07729 FCD domain XB05_20020 PF00392 Bacterial regulatory proteins, gntR family XB05_20025 PF07859 alpha/beta hydrolase fold XB05_20040 PF13409 Glutathione S-transferase, N-terminal domain XB05_20070 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XB05_20070 PF00326 Prolyl oligopeptidase family XB05_20080 PF07759 Protein of unknown function (DUF1615) XB05_20085 PF05230 MASE2 domain XB05_20085 PF00990 Diguanylate cyclase, GGDEF domain XB05_20095 PF07992 Pyridine nucleotide-disulphide oxidoreductase XB05_20120 PF00892 EamA-like transporter family XB05_20125 PF00497 Bacterial extracellular solute-binding proteins, family 3 XB05_20135 PF03330 Lytic transglycolase XB05_20140 PF00324 Amino acid permease XB05_20145 PF01544 CorA-like Mg2+ transporter protein XB05_20160 PF04616 Glycosyl hydrolases family 43 XB05_20165 PF01204 Trehalase XB05_20190 PF12627 Probable RNA and SrmB- binding site of polymerase A XB05_20190 PF01743 Poly A polymerase head domain XB05_20190 PF01966 HD domain XB05_20200 PF01979 Amidohydrolase family XB05_20205 PF01380 SIS domain XB05_20210 PF00356 Bacterial regulatory proteins, lacI family XB05_20215 PF07690 Major Facilitator Superfamily XB05_20235 PF16355 Domain of unknown function (DUF4982) XB05_20235 PF02837 Glycosyl hydrolases family 2, sugar binding domain XB05_20235 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XB05_20235 PF00703 Glycosyl hydrolases family 2 XB05_20235 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XB05_20270 PF03934 Type II secretion system (T2SS), protein K XB05_20280 PF07963 Prokaryotic N-terminal methylation motif XB05_20280 PF02501 Type II secretion system (T2SS), protein I XB05_20285 PF12019 Type II transport protein GspH XB05_20285 PF07963 Prokaryotic N-terminal methylation motif XB05_20290 PF07963 Prokaryotic N-terminal methylation motif XB05_20290 PF08334 Type II secretion system (T2SS), protein G XB05_20295 PF00482 Type II secretion system (T2SS), protein F XB05_20300 PF00437 Type II/IV secretion system protein XB05_20305 PF00263 Bacterial type II and III secretion system protein XB05_20305 PF03958 Bacterial type II/III secretion system short domain XB05_20350 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XB05_20355 PF00512 His Kinase A (phospho-acceptor) domain XB05_20355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_20360 PF00072 Response regulator receiver domain XB05_20365 PF00512 His Kinase A (phospho-acceptor) domain XB05_20365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_20365 PF01590 GAF domain XB05_20365 PF00360 Phytochrome region XB05_20365 PF08446 PAS fold XB05_20370 PF04972 BON domain XB05_20375 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XB05_20375 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XB05_20380 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XB05_20380 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain XB05_20415 PF01467 Cytidylyltransferase-like XB05_20415 PF00293 NUDIX domain XB05_20435 PF11818 C-terminal domain of tail specific protease (DUF3340) XB05_20435 PF03572 Peptidase family S41 XB05_20435 PF17804 Tail specific protease N-terminal domain XB05_20435 PF00595 PDZ domain XB05_20440 PF04055 Radical SAM superfamily XB05_20440 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family XB05_20445 PF03099 Biotin/lipoate A/B protein ligase family XB05_20450 PF04359 Protein of unknown function (DUF493) XB05_20460 PF00768 D-alanyl-D-alanine carboxypeptidase XB05_20460 PF07943 Penicillin-binding protein 5, C-terminal domain XB05_20465 PF05036 Sporulation related domain XB05_20465 PF03330 Lytic transglycolase XB05_20470 PF13406 Transglycosylase SLT domain XB05_20475 PF00295 Glycosyl hydrolases family 28 XB05_20480 PF01098 Cell cycle protein XB05_20485 PF03717 Penicillin-binding Protein dimerisation domain XB05_20485 PF00905 Penicillin binding protein transpeptidase domain XB05_20495 PF04085 rod shape-determining protein MreC XB05_20505 PF00294 pfkB family carbohydrate kinase XB05_20510 PF02954 Bacterial regulatory protein, Fis family XB05_20510 PF01590 GAF domain XB05_20510 PF00158 Sigma-54 interaction domain XB05_20520 PF08240 Alcohol dehydrogenase GroES-like domain XB05_20520 PF00107 Zinc-binding dehydrogenase XB05_20540 PF13360 PQQ-like domain XB05_20555 PF11838 ERAP1-like C-terminal domain XB05_20555 PF01433 Peptidase family M1 domain XB05_20560 PF03707 Bacterial signalling protein N terminal repeat XB05_20560 PF00563 EAL domain XB05_20560 PF00990 Diguanylate cyclase, GGDEF domain XB05_20565 PF01209 ubiE/COQ5 methyltransferase family XB05_20575 PF13533 Biotin-lipoyl like XB05_20580 PF13673 Acetyltransferase (GNAT) domain XB05_20590 PF07724 AAA domain (Cdc48 subfamily) XB05_20590 PF10431 C-terminal, D2-small domain, of ClpB protein XB05_20590 PF00004 ATPase family associated with various cellular activities (AAA) XB05_20595 PF00227 Proteasome subunit XB05_20600 PF00589 Phage integrase family XB05_20600 PF02899 Phage integrase, N-terminal SAM-like domain XB05_20610 PF01678 Diaminopimelate epimerase XB05_20620 PF04304 Protein of unknown function (DUF454) XB05_20625 PF00326 Prolyl oligopeptidase family XB05_20625 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XB05_20630 PF00155 Aminotransferase class I and II XB05_20645 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XB05_20645 PF00326 Prolyl oligopeptidase family XB05_20670 PF03900 Porphobilinogen deaminase, C-terminal domain XB05_20670 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain XB05_20675 PF04397 LytTr DNA-binding domain XB05_20675 PF00072 Response regulator receiver domain XB05_20680 PF06580 Histidine kinase XB05_20680 PF07694 5TMR of 5TMR-LYT XB05_20690 PF13632 Glycosyl transferase family group 2 XB05_20700 PF00990 Diguanylate cyclase, GGDEF domain XB05_20700 PF08448 PAS fold XB05_20705 PF01740 STAS domain XB05_20705 PF00916 Sulfate permease family XB05_20710 PF00150 Cellulase (glycosyl hydrolase family 5) XB05_20710 PF00553 Cellulose binding domain XB05_20715 PF02203 Tar ligand binding domain homologue XB05_20715 PF00672 HAMP domain XB05_20715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XB05_20720 PF00563 EAL domain XB05_20720 PF00990 Diguanylate cyclase, GGDEF domain XB05_20720 PF03707 Bacterial signalling protein N terminal repeat XB05_20745 PF03814 Potassium-transporting ATPase A subunit XB05_20755 PF02669 K+-transporting ATPase, c chain XB05_20760 PF13493 Domain of unknown function (DUF4118) XB05_20760 PF13492 GAF domain XB05_20760 PF02702 Osmosensitive K+ channel His kinase sensor domain XB05_20760 PF00512 His Kinase A (phospho-acceptor) domain XB05_20760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_20765 PF00072 Response regulator receiver domain XB05_20765 PF00486 Transcriptional regulatory protein, C terminal XB05_20770 PF02913 FAD linked oxidases, C-terminal domain XB05_20770 PF01565 FAD binding domain XB05_20775 PF04307 LexA-binding, inner membrane-associated putative hydrolase XB05_20780 PF02021 Uncharacterised protein family UPF0102 XB05_20790 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XB05_20800 PF02381 MraZ protein, putative antitoxin-like XB05_20805 PF01795 MraW methylase family XB05_20810 PF04999 Cell division protein FtsL XB05_20815 PF00905 Penicillin binding protein transpeptidase domain XB05_20815 PF03717 Penicillin-binding Protein dimerisation domain XB05_20820 PF08245 Mur ligase middle domain XB05_20820 PF02875 Mur ligase family, glutamate ligase domain XB05_20820 PF01225 Mur ligase family, catalytic domain XB05_20825 PF01225 Mur ligase family, catalytic domain XB05_20825 PF02875 Mur ligase family, glutamate ligase domain XB05_20825 PF08245 Mur ligase middle domain XB05_20830 PF00953 Glycosyl transferase family 4 XB05_20835 PF01098 Cell cycle protein XB05_20840 PF03033 Glycosyltransferase family 28 N-terminal domain XB05_20840 PF04101 Glycosyltransferase family 28 C-terminal domain XB05_20845 PF08245 Mur ligase middle domain XB05_20845 PF02875 Mur ligase family, glutamate ligase domain XB05_20845 PF01225 Mur ligase family, catalytic domain XB05_20850 PF07478 D-ala D-ala ligase C-terminus XB05_20850 PF01820 D-ala D-ala ligase N-terminus XB05_20855 PF03799 Cell division protein FtsQ XB05_20855 PF08478 POTRA domain, FtsQ-type XB05_20860 PF02491 SHS2 domain inserted in FTSA XB05_20865 PF00091 Tubulin/FtsZ family, GTPase domain XB05_20865 PF12327 FtsZ family, C-terminal domain XB05_20870 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase XB05_20880 PF01476 LysM domain XB05_20880 PF01551 Peptidase family M23 XB05_20880 PF08525 Opacity-associated protein A N-terminal motif XB05_20885 PF02810 SEC-C motif XB05_20885 PF07516 SecA Wing and Scaffold domain XB05_20885 PF01043 SecA preprotein cross-linking domain XB05_20885 PF07517 SecA DEAD-like domain XB05_20895 PF00293 NUDIX domain XB05_20910 PF02219 Methylenetetrahydrofolate reductase XB05_20915 PF16197 Ketoacyl-synthetase C-terminal extension XB05_20915 PF00109 Beta-ketoacyl synthase, N-terminal domain XB05_20915 PF02801 Beta-ketoacyl synthase, C-terminal domain XB05_20915 PF08659 KR domain XB05_20915 PF08240 Alcohol dehydrogenase GroES-like domain XB05_20915 PF00550 Phosphopantetheine attachment site XB05_20915 PF00698 Acyl transferase domain XB05_20915 PF14765 Polyketide synthase dehydratase XB05_20915 PF00107 Zinc-binding dehydrogenase XB05_20920 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XB05_20925 PF00128 Alpha amylase, catalytic domain XB05_20950 PF05221 S-adenosyl-L-homocysteine hydrolase XB05_20950 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XB05_20960 PF00311 Phosphoenolpyruvate carboxylase XB05_20980 PF00223 Photosystem I psaA/psaB protein XB05_20980 PF00691 OmpA family XB05_20985 PF00328 Histidine phosphatase superfamily (branch 2) XB05_20990 PF02773 S-adenosylmethionine synthetase, C-terminal domain XB05_20990 PF00438 S-adenosylmethionine synthetase, N-terminal domain XB05_20990 PF02772 S-adenosylmethionine synthetase, central domain XB05_21010 PF13649 Methyltransferase domain XB05_21015 PF01207 Dihydrouridine synthase (Dus) XB05_21020 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) XB05_21020 PF00294 pfkB family carbohydrate kinase XB05_21025 PF01773 Na+ dependent nucleoside transporter N-terminus XB05_21025 PF07662 Na+ dependent nucleoside transporter C-terminus XB05_21025 PF07670 Nucleoside recognition XB05_21035 PF00248 Aldo/keto reductase family XB05_21045 PF07715 TonB-dependent Receptor Plug Domain XB05_21045 PF00593 TonB dependent receptor XB05_21070 PF00528 Binding-protein-dependent transport system inner membrane component XB05_21075 PF00005 ABC transporter XB05_21085 PF02668 Taurine catabolism dioxygenase TauD, TfdA family XB05_21095 PF00005 ABC transporter XB05_21100 PF13472 GDSL-like Lipase/Acylhydrolase family XB05_21105 PF00486 Transcriptional regulatory protein, C terminal XB05_21105 PF00072 Response regulator receiver domain XB05_21110 PF00512 His Kinase A (phospho-acceptor) domain XB05_21110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_21110 PF08521 Two-component sensor kinase N-terminal XB05_21120 PF01219 Prokaryotic diacylglycerol kinase XB05_21140 PF01790 Prolipoprotein diacylglyceryl transferase XB05_21145 PF00303 Thymidylate synthase XB05_21155 PF00186 Dihydrofolate reductase XB05_21165 PF00149 Calcineurin-like phosphoesterase XB05_21170 PF04379 ApaG domain XB05_21175 PF00398 Ribosomal RNA adenine dimethylase XB05_21180 PF04166 Pyridoxal phosphate biosynthetic protein PdxA XB05_21185 PF09312 SurA N-terminal domain XB05_21185 PF00639 PPIC-type PPIASE domain XB05_21190 PF03968 OstA-like protein XB05_21190 PF04453 LPS transport system D XB05_21195 PF00850 Histone deacetylase domain XB05_21200 PF01923 Cobalamin adenosyltransferase XB05_21210 PF01494 FAD binding domain XB05_21215 PF01494 FAD binding domain XB05_21235 PF00392 Bacterial regulatory proteins, gntR family XB05_21235 PF07729 FCD domain XB05_21240 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XB05_21245 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit XB05_21245 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XB05_21250 PF03466 LysR substrate binding domain XB05_21250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_21255 PF00501 AMP-binding enzyme XB05_21255 PF13193 AMP-binding enzyme C-terminal domain XB05_21260 PF00171 Aldehyde dehydrogenase family XB05_21265 PF00378 Enoyl-CoA hydratase/isomerase XB05_21290 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XB05_21290 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XB05_21295 PF18125 RlmM ferredoxin-like domain XB05_21295 PF01728 FtsJ-like methyltransferase XB05_21315 PF00892 EamA-like transporter family XB05_21320 PF00749 tRNA synthetases class I (E and Q), catalytic domain XB05_21320 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain XB05_21335 PF00990 Diguanylate cyclase, GGDEF domain XB05_21335 PF00072 Response regulator receiver domain XB05_21340 PF00072 Response regulator receiver domain XB05_21340 PF01627 Hpt domain XB05_21340 PF17149 Periplasmic sensor domain found in signal transduction proteins XB05_21340 PF00672 HAMP domain XB05_21340 PF00512 His Kinase A (phospho-acceptor) domain XB05_21340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_21345 PF00196 Bacterial regulatory proteins, luxR family XB05_21345 PF00072 Response regulator receiver domain XB05_21355 PF01625 Peptide methionine sulfoxide reductase XB05_21365 PF00923 Transaldolase/Fructose-6-phosphate aldolase XB05_21370 PF01272 Transcription elongation factor, GreA/GreB, C-term XB05_21370 PF14760 Rnk N-terminus XB05_21375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XB05_21375 PF03466 LysR substrate binding domain XB05_21380 PF13192 Thioredoxin domain XB05_21380 PF07992 Pyridine nucleotide-disulphide oxidoreductase XB05_21385 PF00578 AhpC/TSA family XB05_21385 PF10417 C-terminal domain of 1-Cys peroxiredoxin XB05_21390 PF17827 PrmC N-terminal domain XB05_21390 PF05175 Methyltransferase small domain XB05_21395 PF00561 alpha/beta hydrolase fold XB05_21405 PF00293 NUDIX domain XB05_21410 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XB05_21410 PF01367 5'-3' exonuclease, C-terminal SAM fold XB05_21410 PF00476 DNA polymerase family A XB05_21410 PF01612 3'-5' exonuclease XB05_21440 PF01262 Alanine dehydrogenase/PNT, C-terminal domain XB05_21440 PF05222 Alanine dehydrogenase/PNT, N-terminal domain XB05_21440 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch XB05_21460 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch XB05_21465 PF02233 NAD(P) transhydrogenase beta subunit XB05_21485 PF01063 Amino-transferase class IV XB05_21490 PF04151 Bacterial pre-peptidase C-terminal domain XB05_21490 PF00082 Subtilase family XB05_21495 PF04151 Bacterial pre-peptidase C-terminal domain XB05_21495 PF00082 Subtilase family XB05_21500 PF04151 Bacterial pre-peptidase C-terminal domain XB05_21500 PF00082 Subtilase family XB05_21505 PF04073 Aminoacyl-tRNA editing domain XB05_21520 PF03358 NADPH-dependent FMN reductase XB05_21525 PF03631 Virulence factor BrkB XB05_21530 PF08534 Redoxin XB05_21535 PF00708 Acylphosphatase XB05_21545 PF03976 Polyphosphate kinase 2 (PPK2) XB05_21550 PF00994 Probable molybdopterin binding domain XB05_21560 PF03462 PCRF domain XB05_21560 PF00472 RF-1 domain XB05_21565 PF01488 Shikimate / quinate 5-dehydrogenase XB05_21565 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain XB05_21565 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain XB05_21575 PF03550 Outer membrane lipoprotein LolB XB05_21580 PF08544 GHMP kinases C terminal XB05_21580 PF00288 GHMP kinases N terminal domain XB05_21590 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase XB05_21590 PF14572 Phosphoribosyl synthetase-associated domain XB05_21595 PF01386 Ribosomal L25p family XB05_21595 PF14693 Ribosomal protein TL5, C-terminal domain XB05_21600 PF01195 Peptidyl-tRNA hydrolase XB05_21605 PF01926 50S ribosome-binding GTPase XB05_21605 PF06071 Protein of unknown function (DUF933) XB05_21635 PF00584 SecE/Sec61-gamma subunits of protein translocation complex XB05_21640 PF02357 Transcription termination factor nusG XB05_21640 PF00467 KOW motif XB05_21645 PF00298 Ribosomal protein L11, RNA binding domain XB05_21645 PF03946 Ribosomal protein L11, N-terminal domain XB05_21650 PF00687 Ribosomal protein L1p/L10e family XB05_21655 PF00466 Ribosomal protein L10 XB05_21660 PF00542 Ribosomal protein L7/L12 C-terminal domain XB05_21660 PF16320 Ribosomal protein L7/L12 dimerisation domain XB05_21665 PF10385 RNA polymerase beta subunit external 1 domain XB05_21665 PF04560 RNA polymerase Rpb2, domain 7 XB05_21665 PF04561 RNA polymerase Rpb2, domain 2 XB05_21665 PF04563 RNA polymerase beta subunit XB05_21665 PF00562 RNA polymerase Rpb2, domain 6 XB05_21665 PF04565 RNA polymerase Rpb2, domain 3 XB05_21670 PF04997 RNA polymerase Rpb1, domain 1 XB05_21670 PF00623 RNA polymerase Rpb1, domain 2 XB05_21670 PF05000 RNA polymerase Rpb1, domain 4 XB05_21670 PF04998 RNA polymerase Rpb1, domain 5 XB05_21670 PF04983 RNA polymerase Rpb1, domain 3 XB05_21675 PF00164 Ribosomal protein S12/S23 XB05_21680 PF00177 Ribosomal protein S7p/S5e XB05_21685 PF00009 Elongation factor Tu GTP binding domain XB05_21685 PF03764 Elongation factor G, domain IV XB05_21685 PF00679 Elongation factor G C-terminus XB05_21685 PF14492 Elongation Factor G, domain II XB05_21685 PF03144 Elongation factor Tu domain 2 XB05_21695 PF00338 Ribosomal protein S10p/S20e XB05_21700 PF00297 Ribosomal protein L3 XB05_21705 PF00573 Ribosomal protein L4/L1 family XB05_21710 PF00276 Ribosomal protein L23 XB05_21715 PF00181 Ribosomal Proteins L2, RNA binding domain XB05_21715 PF03947 Ribosomal Proteins L2, C-terminal domain XB05_21720 PF00203 Ribosomal protein S19 XB05_21725 PF00237 Ribosomal protein L22p/L17e XB05_21730 PF00189 Ribosomal protein S3, C-terminal domain XB05_21730 PF07650 KH domain XB05_21735 PF00252 Ribosomal protein L16p/L10e XB05_21740 PF00831 Ribosomal L29 protein XB05_21745 PF00366 Ribosomal protein S17 XB05_21750 PF00238 Ribosomal protein L14p/L23e XB05_21755 PF00467 KOW motif XB05_21755 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 XB05_21760 PF00673 ribosomal L5P family C-terminus XB05_21760 PF00281 Ribosomal protein L5 XB05_21765 PF00253 Ribosomal protein S14p/S29e XB05_21770 PF00410 Ribosomal protein S8 XB05_21775 PF00347 Ribosomal protein L6 XB05_21780 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast XB05_21785 PF03719 Ribosomal protein S5, C-terminal domain XB05_21785 PF00333 Ribosomal protein S5, N-terminal domain XB05_21790 PF00327 Ribosomal protein L30p/L7e XB05_21795 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A XB05_21800 PF00344 SecY translocase XB05_21805 PF00416 Ribosomal protein S13/S18 XB05_21810 PF00411 Ribosomal protein S11 XB05_21815 PF00163 Ribosomal protein S4/S9 N-terminal domain XB05_21815 PF01479 S4 domain XB05_21820 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain XB05_21820 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain XB05_21820 PF01000 RNA polymerase Rpb3/RpoA insert domain XB05_21825 PF01196 Ribosomal protein L17 XB05_21830 PF02600 Disulfide bond formation protein DsbB XB05_21835 PF01474 Class-II DAHP synthetase family XB05_21845 PF01425 Amidase XB05_21860 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XB05_21865 PF00056 lactate/malate dehydrogenase, NAD binding domain XB05_21865 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain XB05_21870 PF00043 Glutathione S-transferase, C-terminal domain XB05_21870 PF02798 Glutathione S-transferase, N-terminal domain XB05_21885 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XB05_21885 PF07992 Pyridine nucleotide-disulphide oxidoreductase XB05_21890 PF08240 Alcohol dehydrogenase GroES-like domain XB05_21890 PF00107 Zinc-binding dehydrogenase XB05_21895 PF00691 OmpA family XB05_21895 PF00223 Photosystem I psaA/psaB protein XB05_21905 PF00849 RNA pseudouridylate synthase XB05_21915 PF00155 Aminotransferase class I and II XB05_21925 PF00528 Binding-protein-dependent transport system inner membrane component XB05_21930 PF00528 Binding-protein-dependent transport system inner membrane component XB05_21935 PF17850 CysA C-terminal regulatory domain XB05_21935 PF12857 TOBE-like domain XB05_21935 PF00005 ABC transporter XB05_21945 PF00107 Zinc-binding dehydrogenase XB05_21945 PF08240 Alcohol dehydrogenase GroES-like domain XB05_21955 PF04185 Phosphoesterase family XB05_21955 PF05506 Domain of unknown function (DUF756) XB05_21960 PF00300 Histidine phosphatase superfamily (branch 1) XB05_21970 PF02875 Mur ligase family, glutamate ligase domain XB05_21970 PF08245 Mur ligase middle domain XB05_21985 PF00156 Phosphoribosyl transferase domain XB05_21990 PF04305 Protein of unknown function (DUF455) XB05_22005 PF00149 Calcineurin-like phosphoesterase XB05_22010 PF01569 PAP2 superfamily XB05_22015 PF13439 Glycosyltransferase Family 4 XB05_22015 PF00534 Glycosyl transferases group 1 XB05_22020 PF02541 Ppx/GppA phosphatase family XB05_22025 PF13090 Polyphosphate kinase C-terminal domain 2 XB05_22025 PF17941 Polyphosphate kinase C-terminal domain 1 XB05_22025 PF02503 Polyphosphate kinase middle domain XB05_22025 PF13089 Polyphosphate kinase N-terminal domain XB05_22030 PF00512 His Kinase A (phospho-acceptor) domain XB05_22030 PF00989 PAS fold XB05_22030 PF11808 Phosphate regulon sensor protein PhoR XB05_22030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XB05_22035 PF00486 Transcriptional regulatory protein, C terminal XB05_22035 PF00072 Response regulator receiver domain XB05_22040 PF13181 Tetratricopeptide repeat XB05_22040 PF01435 Peptidase family M48 XB05_22045 PF00462 Glutaredoxin XB05_22055 PF00180 Isocitrate/isopropylmalate dehydrogenase