XB05_00015 SM00267 diguanylate cyclase XB05_00020 SM00448 cheY-homologous receiver domain XB05_00115 SM00387 Histidine kinase-like ATPases XB05_00135 SM00382 ATPases associated with a variety of cellular activities XB05_00135 SM00994 ClpX C4-type zinc finger XB05_00135 SM01086 C-terminal, D2-small domain, of ClpB protein XB05_00140 SM00382 ATPases associated with a variety of cellular activities XB05_00140 SM00464 Found in ATP-dependent protease La (LON) XB05_00145 SM00411 bacterial (prokaryotic) histone like domain XB05_00170 SM00257 Lysin motif XB05_00175 SM00849 Metallo-beta-lactamase superfamily XB05_00190 SM00479 XB05_00190 XB05_00195 SM00331 Sigma factor PP2C-like phosphatases XB05_00195 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain XB05_00220 SM00849 Metallo-beta-lactamase superfamily XB05_00225 SM00729 Elongator protein 3, MiaB family, Radical SAM XB05_00250 SM00382 ATPases associated with a variety of cellular activities XB05_00260 SM00493 XB05_00260 XB05_00275 SM00460 Transglutaminase/protease-like homologues XB05_00285 SM00382 ATPases associated with a variety of cellular activities XB05_00330 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XB05_00335 SM00822 XB05_00335 XB05_00345 SM00825 Beta-ketoacyl synthase XB05_00380 SM00382 ATPases associated with a variety of cellular activities XB05_00425 SM01359 XB05_00425 XB05_00425 SM01360 XB05_00425 XB05_00465 SM00271 DnaJ molecular chaperone homology domain XB05_00470 SM00448 cheY-homologous receiver domain XB05_00475 SM00244 prohibitin homologues XB05_00480 SM00244 prohibitin homologues XB05_00485 SM01321 XB05_00485 XB05_00495 SM00788 Adenylosuccinate synthetase XB05_00515 SM00822 XB05_00515 XB05_00530 SM00487 DEAD-like helicases superfamily XB05_00580 SM00855 Phosphoglycerate mutase family XB05_00640 SM00052 Putative diguanylate phosphodiesterase XB05_00645 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XB05_00655 SM01217 XB05_00655 XB05_00670 SM00822 XB05_00670 XB05_00695 SM00345 helix_turn_helix gluconate operon transcriptional repressor XB05_00695 SM00895 XB05_00695 XB05_00700 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XB05_00705 SM01092 CO dehydrogenase flavoprotein C-terminal domain XB05_00725 SM00965 Secretin and TonB N terminus short domain XB05_00735 SM00915 Jacalin-like lectin domain XB05_00745 SM00966 SpoVT / AbrB like domain XB05_00765 SM00481 DNA polymerase alpha chain like domain XB05_00790 SM00564 beta-propeller repeat XB05_00815 SM00091 PAS domain XB05_00815 SM00342 helix_turn_helix, arabinose operon control protein XB05_00820 SM01060 XB05_00820 XB05_00875 SM00448 cheY-homologous receiver domain XB05_00875 SM00862 Transcriptional regulatory protein, C terminal XB05_00880 SM00387 Histidine kinase-like ATPases XB05_00880 SM00388 His Kinase A (phosphoacceptor) domain XB05_00915 SM00421 helix_turn_helix, Lux Regulon XB05_00915 SM00448 cheY-homologous receiver domain XB05_00930 SM00478 endonuclease III XB05_00950 SM00244 prohibitin homologues XB05_01035 SM00904 Riboflavin kinase XB05_01080 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XB05_01085 SM00382 ATPases associated with a variety of cellular activities XB05_01095 SM00862 Transcriptional regulatory protein, C terminal XB05_01100 SM00342 helix_turn_helix, arabinose operon control protein XB05_01130 SM00387 Histidine kinase-like ATPases XB05_01140 SM00387 Histidine kinase-like ATPases XB05_01140 SM00388 His Kinase A (phosphoacceptor) domain XB05_01145 SM00387 Histidine kinase-like ATPases XB05_01145 SM00388 His Kinase A (phosphoacceptor) domain XB05_01145 SM00448 cheY-homologous receiver domain XB05_01170 SM00387 Histidine kinase-like ATPases XB05_01170 SM00388 His Kinase A (phosphoacceptor) domain XB05_01170 SM00448 cheY-homologous receiver domain XB05_01180 SM00138 Methyltransferase, chemotaxis proteins XB05_01185 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XB05_01185 SM00387 Histidine kinase-like ATPases XB05_01185 SM00388 His Kinase A (phosphoacceptor) domain XB05_01185 SM00448 cheY-homologous receiver domain XB05_01190 SM00387 Histidine kinase-like ATPases XB05_01190 SM00388 His Kinase A (phosphoacceptor) domain XB05_01195 SM00448 cheY-homologous receiver domain XB05_01225 SM00813 Alpha-L-arabinofuranosidase C-terminus XB05_01240 SM00382 ATPases associated with a variety of cellular activities XB05_01240 SM00962 SRP54-type protein, GTPase domain XB05_01240 SM00963 SRP54-type protein, helical bundle domain XB05_01295 SM00533 DNA-binding domain of DNA mismatch repair MUTS family XB05_01295 SM00534 ATPase domain of DNA mismatch repair MUTS family XB05_01345 SM00327 von Willebrand factor (vWF) type A domain XB05_01365 SM00530 Helix-turn-helix XRE-family like proteins XB05_01390 SM00530 Helix-turn-helix XRE-family like proteins XB05_01405 SM00646 XB05_01405 XB05_01465 SM00812 Alpha-L-fucosidase XB05_01490 SM00530 Helix-turn-helix XRE-family like proteins XB05_01530 SM00028 Tetratricopeptide repeats XB05_01540 SM00028 Tetratricopeptide repeats XB05_01565 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XB05_01570 SM00838 Elongation factor G C-terminus XB05_01585 SM00358 Double-stranded RNA binding motif XB05_01585 SM00535 Ribonuclease III family XB05_01600 SM00448 cheY-homologous receiver domain XB05_01610 SM01118 XB05_01610 XB05_01645 SM00357 Cold shock protein domain XB05_01660 SM00487 DEAD-like helicases superfamily XB05_01660 SM00490 helicase superfamily c-terminal domain XB05_01690 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XB05_01690 SM00267 diguanylate cyclase XB05_01710 SM00869 Autotransporter beta-domain XB05_01715 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XB05_01720 SM00671 Sel1-like repeats. XB05_01720 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. XB05_01930 SM00382 ATPases associated with a variety of cellular activities XB05_01955 SM00342 helix_turn_helix, arabinose operon control protein XB05_02020 SM00481 DNA polymerase alpha chain like domain XB05_02060 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XB05_02090 SM00267 diguanylate cyclase XB05_02115 SM00972 Spore Coat Protein U domain XB05_02130 SM00972 Spore Coat Protein U domain XB05_02140 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XB05_02165 SM01172 XB05_02165 XB05_02170 SM00710 Parallel beta-helix repeats XB05_02170 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses XB05_02195 SM00434 DNA Topoisomerase IV XB05_02200 SM00342 helix_turn_helix, arabinose operon control protein XB05_02205 SM00347 helix_turn_helix multiple antibiotic resistance protein XB05_02240 SM01217 XB05_02240 XB05_02245 SM00631 XB05_02245 XB05_02275 SM00347 helix_turn_helix multiple antibiotic resistance protein XB05_02295 SM00382 ATPases associated with a variety of cellular activities XB05_02315 SM00947 Carbonic anhydrase XB05_02330 SM00357 Cold shock protein domain XB05_02430 SM00822 XB05_02430 XB05_02440 SM00267 diguanylate cyclase XB05_02450 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XB05_02450 SM00267 diguanylate cyclase XB05_02475 SM00528 Domain in histone-like proteins of HNS family XB05_02505 SM00248 ankyrin repeats XB05_02555 SM00530 Helix-turn-helix XRE-family like proteins XB05_02590 SM00382 ATPases associated with a variety of cellular activities XB05_02650 SM00327 von Willebrand factor (vWF) type A domain XB05_02715 SM00271 DnaJ molecular chaperone homology domain XB05_02755 SM00382 ATPases associated with a variety of cellular activities XB05_02780 SM00861 Transketolase, pyrimidine binding domain XB05_02790 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. XB05_02835 SM00382 ATPases associated with a variety of cellular activities XB05_02840 SM00345 helix_turn_helix gluconate operon transcriptional repressor XB05_02860 SM00984 UDP binding domain XB05_02885 SM00354 helix_turn _helix lactose operon repressor XB05_02905 SM01018 B12 binding domain XB05_02915 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor XB05_02935 SM00316 Ribosomal protein S1-like RNA-binding domain XB05_02935 SM00357 Cold shock protein domain XB05_02935 SM00955 XB05_02935 XB05_02945 SM00967 RNA 2'-O ribose methyltransferase substrate binding XB05_02955 SM00267 diguanylate cyclase XB05_02960 SM00479 XB05_02960 XB05_02975 SM00382 ATPases associated with a variety of cellular activities XB05_03010 SM00947 Carbonic anhydrase XB05_03020 SM00478 endonuclease III XB05_03045 SM00450 Rhodanese Homology Domain XB05_03055 SM00644 XB05_03055 XB05_03075 SM00382 ATPases associated with a variety of cellular activities XB05_03080 SM00981 XB05_03080 XB05_03110 SM00479 XB05_03110 XB05_03135 SM00947 Carbonic anhydrase XB05_03180 SM00968 SMC proteins Flexible Hinge Domain XB05_03185 SM00771 ZipA, C-terminal domain (FtsZ-binding) XB05_03200 SM00292 breast cancer carboxy-terminal domain XB05_03200 SM00532 Ligase N family XB05_03225 SM00434 DNA Topoisomerase IV XB05_03230 SM00564 beta-propeller repeat XB05_03270 SM00345 helix_turn_helix gluconate operon transcriptional repressor XB05_03270 SM00866 XB05_03270 XB05_03290 SM00240 Forkhead associated domain XB05_03310 SM00830 Chorismate mutase type II XB05_03355 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XB05_03355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_03385 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_03385 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_03395 SM00347 helix_turn_helix multiple antibiotic resistance protein XB05_03400 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XB05_03400 SM00091 PAS domain XB05_03400 SM00387 Histidine kinase-like ATPases XB05_03400 SM00388 His Kinase A (phosphoacceptor) domain XB05_03400 SM00448 cheY-homologous receiver domain XB05_03405 SM00448 cheY-homologous receiver domain XB05_03410 SM00382 ATPases associated with a variety of cellular activities XB05_03415 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XB05_03415 SM00091 PAS domain XB05_03415 SM00387 Histidine kinase-like ATPases XB05_03415 SM00388 His Kinase A (phosphoacceptor) domain XB05_03415 SM00448 cheY-homologous receiver domain XB05_03565 SM00729 Elongator protein 3, MiaB family, Radical SAM XB05_03575 SM00382 ATPases associated with a variety of cellular activities XB05_03600 SM01091 Transporter associated domain XB05_03625 SM00387 Histidine kinase-like ATPases XB05_03625 SM00433 TopoisomeraseII XB05_03650 SM01192 XB05_03650 XB05_03650 SM01193 XB05_03650 XB05_03675 SM00463 Small MutS-related domain XB05_03695 SM00257 Lysin motif XB05_03705 SM01103 XB05_03705 XB05_03715 SM00382 ATPases associated with a variety of cellular activities XB05_03760 SM00382 ATPases associated with a variety of cellular activities XB05_03770 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain XB05_03785 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XB05_03785 SM00091 PAS domain XB05_03785 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_03835 SM00670 Large family of predicted nucleotide-binding domains XB05_03855 SM01130 XB05_03855 XB05_03880 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XB05_03920 SM00758 XB05_03920 XB05_03960 SM00646 XB05_03960 XB05_04030 SM00052 Putative diguanylate phosphodiesterase XB05_04030 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XB05_04030 SM00267 diguanylate cyclase XB05_04045 SM00448 cheY-homologous receiver domain XB05_04050 SM00387 Histidine kinase-like ATPases XB05_04060 SM00014 Acid phosphatase homologues XB05_04245 SM00100 Cyclic nucleotide-monophosphate binding domain XB05_04245 SM00419 helix_turn_helix, cAMP Regulatory protein XB05_04325 SM01007 Class II Aldolase and Adducin N-terminal domain XB05_04375 SM00841 Elongation factor P, C-terminal XB05_04375 SM01185 XB05_04375 XB05_04380 SM00822 XB05_04380 XB05_04395 SM00899 XB05_04395 XB05_04435 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain XB05_04445 SM00851 MGS-like domain XB05_04445 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XB05_04475 SM00850 LytTr DNA-binding domain XB05_04480 SM00937 XB05_04480 XB05_04490 SM00448 cheY-homologous receiver domain XB05_04490 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XB05_04495 SM00073 Histidine Phosphotransfer domain XB05_04495 SM00387 Histidine kinase-like ATPases XB05_04495 SM00388 His Kinase A (phosphoacceptor) domain XB05_04495 SM00448 cheY-homologous receiver domain XB05_04520 SM00966 SpoVT / AbrB like domain XB05_04540 SM00052 Putative diguanylate phosphodiesterase XB05_04540 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XB05_04540 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XB05_04540 SM00091 PAS domain XB05_04540 SM00267 diguanylate cyclase XB05_04545 SM00448 cheY-homologous receiver domain XB05_04555 SM00138 Methyltransferase, chemotaxis proteins XB05_04560 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_04560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_04570 SM00260 Two component signalling adaptor domain XB05_04580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_04580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_04585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_04585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_04590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_04590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_04595 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_04595 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_04600 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_04600 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_04605 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_04605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_04610 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_04620 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_04620 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_04625 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_04625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_04625 SM01049 XB05_04625 XB05_04640 SM00073 Histidine Phosphotransfer domain XB05_04640 SM00260 Two component signalling adaptor domain XB05_04640 SM00387 Histidine kinase-like ATPases XB05_04640 SM01231 XB05_04640 XB05_04645 SM00448 cheY-homologous receiver domain XB05_04655 SM00260 Two component signalling adaptor domain XB05_04720 SM00073 Histidine Phosphotransfer domain XB05_04720 SM00260 Two component signalling adaptor domain XB05_04720 SM00387 Histidine kinase-like ATPases XB05_04720 SM01231 XB05_04720 XB05_04730 SM00448 cheY-homologous receiver domain XB05_04745 SM00382 ATPases associated with a variety of cellular activities XB05_04745 SM00962 SRP54-type protein, GTPase domain XB05_04760 SM00267 diguanylate cyclase XB05_04765 SM00267 diguanylate cyclase XB05_04815 SM00382 ATPases associated with a variety of cellular activities XB05_04885 SM00822 XB05_04885 XB05_04910 SM00382 ATPases associated with a variety of cellular activities XB05_04915 SM00448 cheY-homologous receiver domain XB05_04925 SM00421 helix_turn_helix, Lux Regulon XB05_04925 SM00448 cheY-homologous receiver domain XB05_04995 SM00382 ATPases associated with a variety of cellular activities XB05_05060 SM00530 Helix-turn-helix XRE-family like proteins XB05_05140 SM00345 helix_turn_helix gluconate operon transcriptional repressor XB05_05220 SM00342 helix_turn_helix, arabinose operon control protein XB05_05230 SM00470 ParB-like nuclease domain XB05_05245 SM00382 ATPases associated with a variety of cellular activities XB05_05305 SM00047 Lysozyme subfamily 2 XB05_05350 SM00260 Two component signalling adaptor domain XB05_05350 SM00448 cheY-homologous receiver domain XB05_05355 SM00858 XB05_05355 XB05_05370 SM00387 Histidine kinase-like ATPases XB05_05375 SM00052 Putative diguanylate phosphodiesterase XB05_05375 SM00267 diguanylate cyclase XB05_05375 SM00448 cheY-homologous receiver domain XB05_05380 SM00091 PAS domain XB05_05380 SM00387 Histidine kinase-like ATPases XB05_05385 SM00052 Putative diguanylate phosphodiesterase XB05_05385 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XB05_05385 SM00091 PAS domain XB05_05385 SM00267 diguanylate cyclase XB05_05395 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_05420 SM00382 ATPases associated with a variety of cellular activities XB05_05420 SM01086 C-terminal, D2-small domain, of ClpB protein XB05_05425 SM00316 Ribosomal protein S1-like RNA-binding domain XB05_05445 SM00382 ATPases associated with a variety of cellular activities XB05_05445 SM00843 XB05_05445 XB05_05460 SM00382 ATPases associated with a variety of cellular activities XB05_05485 SM00562 XB05_05485 XB05_05495 SM00028 Tetratricopeptide repeats XB05_05510 SM00564 beta-propeller repeat XB05_05515 SM00382 ATPases associated with a variety of cellular activities XB05_05520 SM00852 Probable molybdopterin binding domain XB05_05525 SM00450 Rhodanese Homology Domain XB05_05560 SM00852 Probable molybdopterin binding domain XB05_05580 SM00448 cheY-homologous receiver domain XB05_05580 SM01012 XB05_05580 XB05_05605 SM00926 Molybdopterin oxidoreductase Fe4S4 domain XB05_05630 SM00052 Putative diguanylate phosphodiesterase XB05_05635 SM00869 Autotransporter beta-domain XB05_05640 SM00869 Autotransporter beta-domain XB05_05670 SM00318 Staphylococcal nuclease homologues XB05_05675 SM00448 cheY-homologous receiver domain XB05_05680 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XB05_05680 SM00387 Histidine kinase-like ATPases XB05_05725 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_05725 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_05760 SM00091 PAS domain XB05_05760 SM00387 Histidine kinase-like ATPases XB05_05765 SM00421 helix_turn_helix, Lux Regulon XB05_05765 SM00448 cheY-homologous receiver domain XB05_05830 SM00363 S4 RNA-binding domain XB05_05835 SM00316 Ribosomal protein S1-like RNA-binding domain XB05_05840 SM00421 helix_turn_helix, Lux Regulon XB05_05840 SM00448 cheY-homologous receiver domain XB05_05845 SM00450 Rhodanese Homology Domain XB05_05865 SM00984 UDP binding domain XB05_05895 SM00278 Helix-hairpin-helix DNA-binding motif class 1 XB05_05895 SM00465 GIY-YIG type nucleases (URI domain) XB05_05905 SM00226 Low molecular weight phosphatase family XB05_05920 SM00382 ATPases associated with a variety of cellular activities XB05_05935 SM00849 Metallo-beta-lactamase superfamily XB05_05945 SM00382 ATPases associated with a variety of cellular activities XB05_05995 SM00382 ATPases associated with a variety of cellular activities XB05_06080 SM00448 cheY-homologous receiver domain XB05_06085 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XB05_06085 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XB05_06085 SM00091 PAS domain XB05_06085 SM00387 Histidine kinase-like ATPases XB05_06085 SM00388 His Kinase A (phosphoacceptor) domain XB05_06085 SM00448 cheY-homologous receiver domain XB05_06090 SM00316 Ribosomal protein S1-like RNA-binding domain XB05_06090 SM00732 Likely ribonuclease with RNase H fold. XB05_06160 SM00479 XB05_06160 XB05_06170 SM00529 Helix-turn-helix diphteria tox regulatory element XB05_06185 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_06200 SM00829 Enoylreductase XB05_06250 SM00487 DEAD-like helicases superfamily XB05_06250 SM00490 helicase superfamily c-terminal domain XB05_06295 SM00382 ATPases associated with a variety of cellular activities XB05_06360 SM00829 Enoylreductase XB05_06465 SM00530 Helix-turn-helix XRE-family like proteins XB05_06510 SM00116 Domain in cystathionine beta-synthase and other proteins. XB05_06510 SM01240 XB05_06510 XB05_06535 SM00822 XB05_06535 XB05_06545 SM00028 Tetratricopeptide repeats XB05_06555 SM00411 bacterial (prokaryotic) histone like domain XB05_06560 SM00316 Ribosomal protein S1-like RNA-binding domain XB05_06635 SM00354 helix_turn _helix lactose operon repressor XB05_06660 SM00363 S4 RNA-binding domain XB05_06685 SM00382 ATPases associated with a variety of cellular activities XB05_06745 SM00382 ATPases associated with a variety of cellular activities XB05_06750 SM00382 ATPases associated with a variety of cellular activities XB05_06780 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain XB05_06790 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase XB05_06810 SM00859 Semialdehyde dehydrogenase, NAD binding domain XB05_06845 SM00840 XB05_06845 XB05_06870 SM01234 XB05_06870 XB05_06940 SM00841 Elongation factor P, C-terminal XB05_06940 SM01185 XB05_06940 XB05_06950 SM00052 Putative diguanylate phosphodiesterase XB05_06950 SM00267 diguanylate cyclase XB05_06950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_06985 SM00382 ATPases associated with a variety of cellular activities XB05_06990 SM00487 DEAD-like helicases superfamily XB05_06990 SM00490 helicase superfamily c-terminal domain XB05_07015 SM00357 Cold shock protein domain XB05_07025 SM01322 XB05_07025 XB05_07035 SM00052 Putative diguanylate phosphodiesterase XB05_07035 SM00267 diguanylate cyclase XB05_07050 SM00822 XB05_07050 XB05_07070 SM00853 MutL C terminal dimerisation domain XB05_07070 SM01340 XB05_07070 XB05_07075 SM00646 XB05_07075 XB05_07110 SM00474 3'-5' exonuclease XB05_07115 SM00528 Domain in histone-like proteins of HNS family XB05_07125 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XB05_07125 SM00267 diguanylate cyclase XB05_07130 SM00260 Two component signalling adaptor domain XB05_07135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_07135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_07145 SM00487 DEAD-like helicases superfamily XB05_07145 SM00490 helicase superfamily c-terminal domain XB05_07195 SM00729 Elongator protein 3, MiaB family, Radical SAM XB05_07215 SM00116 Domain in cystathionine beta-synthase and other proteins. XB05_07215 SM01091 Transporter associated domain XB05_07250 SM00382 ATPases associated with a variety of cellular activities XB05_07280 SM01230 XB05_07280 XB05_07290 SM01230 XB05_07290 XB05_07300 SM00267 diguanylate cyclase XB05_07300 SM00448 cheY-homologous receiver domain XB05_07315 SM00267 diguanylate cyclase XB05_07315 SM00448 cheY-homologous receiver domain XB05_07320 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XB05_07320 SM00091 PAS domain XB05_07320 SM00387 Histidine kinase-like ATPases XB05_07320 SM00388 His Kinase A (phosphoacceptor) domain XB05_07320 SM00448 cheY-homologous receiver domain XB05_07320 SM01079 XB05_07320 XB05_07360 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XB05_07360 SM00091 PAS domain XB05_07360 SM00387 Histidine kinase-like ATPases XB05_07360 SM00388 His Kinase A (phosphoacceptor) domain XB05_07360 SM00448 cheY-homologous receiver domain XB05_07360 SM01079 XB05_07360 XB05_07365 SM00448 cheY-homologous receiver domain XB05_07365 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XB05_07400 SM00822 XB05_07400 XB05_07405 SM00829 Enoylreductase XB05_07430 SM00354 helix_turn _helix lactose operon repressor XB05_07465 SM01323 XB05_07465 XB05_07480 SM00344 helix_turn_helix ASNC type XB05_07550 SM00387 Histidine kinase-like ATPases XB05_07620 SM01130 XB05_07620 XB05_07645 SM00342 helix_turn_helix, arabinose operon control protein XB05_07650 SM00382 ATPases associated with a variety of cellular activities XB05_07650 SM00962 SRP54-type protein, GTPase domain XB05_07650 SM00963 SRP54-type protein, helical bundle domain XB05_07660 SM00478 endonuclease III XB05_07670 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XB05_07670 SM00091 PAS domain XB05_07670 SM00387 Histidine kinase-like ATPases XB05_07670 SM00388 His Kinase A (phosphoacceptor) domain XB05_07670 SM00448 cheY-homologous receiver domain XB05_07710 SM00507 HNH nucleases XB05_07715 SM00861 Transketolase, pyrimidine binding domain XB05_07740 SM00849 Metallo-beta-lactamase superfamily XB05_07825 SM00422 helix_turn_helix, mercury resistance XB05_07830 SM00411 bacterial (prokaryotic) histone like domain XB05_07835 SM00873 B3/4 domain XB05_07835 SM00874 tRNA synthetase B5 domain XB05_07835 SM00896 Ferredoxin-fold anticodon binding domain XB05_07860 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain XB05_07865 SM00354 helix_turn _helix lactose operon repressor XB05_07870 SM00642 Alpha-amylase domain XB05_07895 SM00642 Alpha-amylase domain XB05_07945 SM00382 ATPases associated with a variety of cellular activities XB05_08005 SM00487 DEAD-like helicases superfamily XB05_08005 SM00490 helicase superfamily c-terminal domain XB05_08080 SM01001 AIR carboxylase XB05_08100 SM00316 Ribosomal protein S1-like RNA-binding domain XB05_08100 SM00322 K homology RNA-binding domain XB05_08105 SM01387 XB05_08105 XB05_08125 SM00316 Ribosomal protein S1-like RNA-binding domain XB05_08125 SM00322 K homology RNA-binding domain XB05_08175 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XB05_08180 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region XB05_08225 SM00822 XB05_08225 XB05_08240 SM00052 Putative diguanylate phosphodiesterase XB05_08240 SM00267 diguanylate cyclase XB05_08240 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_08305 SM00859 Semialdehyde dehydrogenase, NAD binding domain XB05_08340 SM00257 Lysin motif XB05_08370 SM00729 Elongator protein 3, MiaB family, Radical SAM XB05_08375 SM00857 Resolvase, N terminal domain XB05_08545 SM01160 XB05_08545 XB05_08600 SM00098 Alkaline phosphatase homologues XB05_08605 SM00977 TilS substrate C-terminal domain XB05_08620 SM01351 XB05_08620 XB05_08645 SM01217 XB05_08645 XB05_08680 SM00316 Ribosomal protein S1-like RNA-binding domain XB05_08775 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor XB05_08805 SM00382 ATPases associated with a variety of cellular activities XB05_08835 SM00448 cheY-homologous receiver domain XB05_08835 SM00862 Transcriptional regulatory protein, C terminal XB05_08840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_08840 SM00387 Histidine kinase-like ATPases XB05_08840 SM00388 His Kinase A (phosphoacceptor) domain XB05_08870 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XB05_08870 SM00267 diguanylate cyclase XB05_08875 SM00363 S4 RNA-binding domain XB05_08880 SM00052 Putative diguanylate phosphodiesterase XB05_08880 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XB05_08880 SM00091 PAS domain XB05_08880 SM00267 diguanylate cyclase XB05_08885 SM00487 DEAD-like helicases superfamily XB05_08885 SM00490 helicase superfamily c-terminal domain XB05_08935 SM00342 helix_turn_helix, arabinose operon control protein XB05_08935 SM00478 endonuclease III XB05_08935 SM01009 AlkA N-terminal domain XB05_08970 SM00347 helix_turn_helix multiple antibiotic resistance protein XB05_09010 SM00342 helix_turn_helix, arabinose operon control protein XB05_09085 SM00645 Papain family cysteine protease XB05_09090 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_09090 SM00387 Histidine kinase-like ATPases XB05_09090 SM00388 His Kinase A (phosphoacceptor) domain XB05_09095 SM00448 cheY-homologous receiver domain XB05_09095 SM00862 Transcriptional regulatory protein, C terminal XB05_09115 SM00487 DEAD-like helicases superfamily XB05_09115 SM00490 helicase superfamily c-terminal domain XB05_09115 SM00982 XB05_09115 XB05_09115 SM01058 CarD-like/TRCF domain XB05_09125 SM00073 Histidine Phosphotransfer domain XB05_09125 SM00260 Two component signalling adaptor domain XB05_09125 SM00387 Histidine kinase-like ATPases XB05_09125 SM01231 XB05_09125 XB05_09130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_09130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_09135 SM00260 Two component signalling adaptor domain XB05_09140 SM00052 Putative diguanylate phosphodiesterase XB05_09140 SM00448 cheY-homologous receiver domain XB05_09145 SM00138 Methyltransferase, chemotaxis proteins XB05_09150 SM00448 cheY-homologous receiver domain XB05_09155 SM00155 Phospholipase D. Active site motifs. XB05_09170 SM00855 Phosphoglycerate mutase family XB05_09215 SM00248 ankyrin repeats XB05_09245 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XB05_09250 SM01092 CO dehydrogenase flavoprotein C-terminal domain XB05_09260 SM00829 Enoylreductase XB05_09265 SM00267 diguanylate cyclase XB05_09330 SM00732 Likely ribonuclease with RNase H fold. XB05_09360 SM00382 ATPases associated with a variety of cellular activities XB05_09375 SM00411 bacterial (prokaryotic) histone like domain XB05_09405 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain XB05_09420 SM00382 ATPases associated with a variety of cellular activities XB05_09450 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. XB05_09455 SM00671 Sel1-like repeats. XB05_09485 SM00054 EF-hand, calcium binding motif XB05_09575 SM00116 Domain in cystathionine beta-synthase and other proteins. XB05_09595 SM00382 ATPases associated with a variety of cellular activities XB05_09645 SM00924 MgtE intracellular N domain XB05_09675 SM00656 XB05_09675 XB05_09685 SM00421 helix_turn_helix, Lux Regulon XB05_09705 SM00849 Metallo-beta-lactamase superfamily XB05_09715 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. XB05_09735 SM00422 helix_turn_helix, mercury resistance XB05_09815 SM00387 Histidine kinase-like ATPases XB05_09815 SM00388 His Kinase A (phosphoacceptor) domain XB05_09815 SM00448 cheY-homologous receiver domain XB05_09825 SM00387 Histidine kinase-like ATPases XB05_09825 SM00388 His Kinase A (phosphoacceptor) domain XB05_09825 SM00448 cheY-homologous receiver domain XB05_09830 SM00867 YceI-like domain XB05_09840 SM00867 YceI-like domain XB05_09845 SM00357 Cold shock protein domain XB05_09900 SM00116 Domain in cystathionine beta-synthase and other proteins. XB05_09985 SM00244 prohibitin homologues XB05_10030 SM00812 Alpha-L-fucosidase XB05_10035 SM00636 XB05_10035 XB05_10050 SM00758 XB05_10050 XB05_10050 SM01217 XB05_10050 XB05_10055 SM01149 XB05_10055 XB05_10100 SM01040 BRO family, N-terminal domain XB05_10115 SM00487 DEAD-like helicases superfamily XB05_10165 SM00327 von Willebrand factor (vWF) type A domain XB05_10185 SM00260 Two component signalling adaptor domain XB05_10195 SM00073 Histidine Phosphotransfer domain XB05_10195 SM00260 Two component signalling adaptor domain XB05_10195 SM00387 Histidine kinase-like ATPases XB05_10195 SM00448 cheY-homologous receiver domain XB05_10195 SM01231 XB05_10195 XB05_10200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_10205 SM00260 Two component signalling adaptor domain XB05_10210 SM00448 cheY-homologous receiver domain XB05_10215 SM00448 cheY-homologous receiver domain XB05_10240 SM00491 XB05_10240 XB05_10265 SM00954 Region found in RelA / SpoT proteins XB05_10310 SM00382 ATPases associated with a variety of cellular activities XB05_10310 SM00487 DEAD-like helicases superfamily XB05_10310 SM00490 helicase superfamily c-terminal domain XB05_10310 SM00847 Helicase associated domain (HA2) Add an annotation XB05_10320 SM00341 Helicase and RNase D C-terminal XB05_10320 SM00487 DEAD-like helicases superfamily XB05_10320 SM00490 helicase superfamily c-terminal domain XB05_10320 SM00956 XB05_10320 XB05_10330 SM00448 cheY-homologous receiver domain XB05_10355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_10355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_10440 SM00382 ATPases associated with a variety of cellular activities XB05_10445 SM00860 SMI1 / KNR4 family XB05_10455 SM00278 Helix-hairpin-helix DNA-binding motif class 1 XB05_10490 SM00834 Putative regulatory protein XB05_10530 SM00382 ATPases associated with a variety of cellular activities XB05_10645 SM00382 ATPases associated with a variety of cellular activities XB05_10645 SM01086 C-terminal, D2-small domain, of ClpB protein XB05_10650 SM00382 ATPases associated with a variety of cellular activities XB05_10660 SM00062 Bacterial periplasmic substrate-binding proteins XB05_10735 SM00564 beta-propeller repeat XB05_10740 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_10780 SM00881 CoA binding domain XB05_10790 SM00091 PAS domain XB05_10790 SM00387 Histidine kinase-like ATPases XB05_10790 SM00388 His Kinase A (phosphoacceptor) domain XB05_10795 SM00382 ATPases associated with a variety of cellular activities XB05_10795 SM00448 cheY-homologous receiver domain XB05_10840 SM00387 Histidine kinase-like ATPases XB05_10840 SM00388 His Kinase A (phosphoacceptor) domain XB05_10845 SM00448 cheY-homologous receiver domain XB05_10845 SM00862 Transcriptional regulatory protein, C terminal XB05_10860 SM00642 Alpha-amylase domain XB05_10865 SM00528 Domain in histone-like proteins of HNS family XB05_11000 SM00965 Secretin and TonB N terminus short domain XB05_11050 SM00530 Helix-turn-helix XRE-family like proteins XB05_11105 SM00869 Autotransporter beta-domain XB05_11155 SM00354 helix_turn _helix lactose operon repressor XB05_11185 SM00967 RNA 2'-O ribose methyltransferase substrate binding XB05_11250 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XB05_11250 SM00387 Histidine kinase-like ATPases XB05_11280 SM00506 Appr-1"-p processing enzyme XB05_11330 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XB05_11355 SM00849 Metallo-beta-lactamase superfamily XB05_11370 SM00382 ATPases associated with a variety of cellular activities XB05_11375 SM00903 Flavin reductase like domain XB05_11395 SM00387 Histidine kinase-like ATPases XB05_11395 SM00388 His Kinase A (phosphoacceptor) domain XB05_11400 SM00448 cheY-homologous receiver domain XB05_11400 SM00862 Transcriptional regulatory protein, C terminal XB05_11455 SM00822 XB05_11455 XB05_11470 SM00861 Transketolase, pyrimidine binding domain XB05_11485 SM00028 Tetratricopeptide repeats XB05_11485 SM00327 von Willebrand factor (vWF) type A domain XB05_11490 SM00327 von Willebrand factor (vWF) type A domain XB05_11505 SM00382 ATPases associated with a variety of cellular activities XB05_11510 SM00965 Secretin and TonB N terminus short domain XB05_11560 SM00487 DEAD-like helicases superfamily XB05_11560 SM00490 helicase superfamily c-terminal domain XB05_11570 SM00858 XB05_11570 XB05_11580 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XB05_11595 SM01130 XB05_11595 XB05_11605 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XB05_11605 SM00954 Region found in RelA / SpoT proteins XB05_11610 SM01409 XB05_11610 XB05_11615 SM00072 Guanylate kinase homologues. XB05_11640 SM00729 Elongator protein 3, MiaB family, Radical SAM XB05_11665 SM01011 Aminopeptidase P, N-terminal domain XB05_11730 SM00028 Tetratricopeptide repeats XB05_11730 SM00382 ATPases associated with a variety of cellular activities XB05_11730 SM00421 helix_turn_helix, Lux Regulon XB05_11815 SM00464 Found in ATP-dependent protease La (LON) XB05_11865 SM00342 helix_turn_helix, arabinose operon control protein XB05_11870 SM00862 Transcriptional regulatory protein, C terminal XB05_11890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_11920 SM00917 LeuA allosteric (dimerisation) domain XB05_11925 SM01329 XB05_11925 XB05_11945 SM00267 diguanylate cyclase XB05_12000 SM00919 Malic enzyme, NAD binding domain XB05_12000 SM01274 XB05_12000 XB05_12015 SM00387 Histidine kinase-like ATPases XB05_12015 SM00388 His Kinase A (phosphoacceptor) domain XB05_12015 SM00448 cheY-homologous receiver domain XB05_12050 SM00421 helix_turn_helix, Lux Regulon XB05_12050 SM00448 cheY-homologous receiver domain XB05_12060 SM00387 Histidine kinase-like ATPases XB05_12060 SM00388 His Kinase A (phosphoacceptor) domain XB05_12065 SM00448 cheY-homologous receiver domain XB05_12065 SM00862 Transcriptional regulatory protein, C terminal XB05_12080 SM00822 XB05_12080 XB05_12085 SM00354 helix_turn _helix lactose operon repressor XB05_12100 SM00642 Alpha-amylase domain XB05_12110 SM01154 XB05_12110 XB05_12155 SM00345 helix_turn_helix gluconate operon transcriptional repressor XB05_12170 SM00829 Enoylreductase XB05_12180 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XB05_12180 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XB05_12180 SM00091 PAS domain XB05_12180 SM00911 HWE histidine kinase XB05_12195 SM00448 cheY-homologous receiver domain XB05_12195 SM00862 Transcriptional regulatory protein, C terminal XB05_12200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_12200 SM00387 Histidine kinase-like ATPases XB05_12200 SM00388 His Kinase A (phosphoacceptor) domain XB05_12210 SM00342 helix_turn_helix, arabinose operon control protein XB05_12215 SM00849 Metallo-beta-lactamase superfamily XB05_12285 SM00450 Rhodanese Homology Domain XB05_12335 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain XB05_12395 SM00382 ATPases associated with a variety of cellular activities XB05_12420 SM00028 Tetratricopeptide repeats XB05_12495 SM00345 helix_turn_helix gluconate operon transcriptional repressor XB05_12495 SM00866 XB05_12495 XB05_12555 SM00382 ATPases associated with a variety of cellular activities XB05_12580 SM01211 XB05_12580 XB05_12630 SM00656 XB05_12630 XB05_12660 SM00528 Domain in histone-like proteins of HNS family XB05_12675 SM00382 ATPases associated with a variety of cellular activities XB05_12705 SM00882 Coenzyme A transferase XB05_12710 SM00882 Coenzyme A transferase XB05_12745 SM00893 Electron transfer flavoprotein domain XB05_12750 SM00893 Electron transfer flavoprotein domain XB05_12830 SM00382 ATPases associated with a variety of cellular activities XB05_12845 SM00116 Domain in cystathionine beta-synthase and other proteins. XB05_12880 SM00487 DEAD-like helicases superfamily XB05_12880 SM00490 helicase superfamily c-terminal domain XB05_12910 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XB05_12945 SM00825 Beta-ketoacyl synthase XB05_13005 SM00382 ATPases associated with a variety of cellular activities XB05_13020 SM00382 ATPases associated with a variety of cellular activities XB05_13020 SM00448 cheY-homologous receiver domain XB05_13025 SM00387 Histidine kinase-like ATPases XB05_13030 SM00710 Parallel beta-helix repeats XB05_13045 SM00830 Chorismate mutase type II XB05_13055 SM00382 ATPases associated with a variety of cellular activities XB05_13120 SM00986 Uracil DNA glycosylase superfamily XB05_13120 SM00987 UreE urease accessory protein, C-terminal domain XB05_13145 SM00382 ATPases associated with a variety of cellular activities XB05_13145 SM00930 XB05_13145 XB05_13165 SM00387 Histidine kinase-like ATPases XB05_13165 SM00388 His Kinase A (phosphoacceptor) domain XB05_13165 SM00448 cheY-homologous receiver domain XB05_13210 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XB05_13210 SM00091 PAS domain XB05_13210 SM00387 Histidine kinase-like ATPases XB05_13210 SM00388 His Kinase A (phosphoacceptor) domain XB05_13210 SM00448 cheY-homologous receiver domain XB05_13230 SM01005 Alanine racemase, C-terminal domain XB05_13240 SM00344 helix_turn_helix ASNC type XB05_13290 SM00382 ATPases associated with a variety of cellular activities XB05_13310 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. XB05_13315 SM00986 Uracil DNA glycosylase superfamily XB05_13315 SM00987 UreE urease accessory protein, C-terminal domain XB05_13320 SM00729 Elongator protein 3, MiaB family, Radical SAM XB05_13425 SM00448 cheY-homologous receiver domain XB05_13425 SM00850 LytTr DNA-binding domain XB05_13430 SM00387 Histidine kinase-like ATPases XB05_13460 SM00091 PAS domain XB05_13460 SM00138 Methyltransferase, chemotaxis proteins XB05_13460 SM00911 HWE histidine kinase XB05_13465 SM00448 cheY-homologous receiver domain XB05_13475 SM00382 ATPases associated with a variety of cellular activities XB05_13475 SM00448 cheY-homologous receiver domain XB05_13560 SM00382 ATPases associated with a variety of cellular activities XB05_13565 SM00631 XB05_13565 XB05_13590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_13590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_13595 SM00477 DNA/RNA non-specific endonuclease XB05_13595 SM00892 DNA/RNA non-specific endonuclease XB05_13780 SM00448 cheY-homologous receiver domain XB05_14010 SM00257 Lysin motif XB05_14035 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain XB05_14035 SM00437 Bacterial DNA topoisomerase I DNA-binding domain XB05_14035 SM00493 XB05_14035 XB05_14085 SM00487 DEAD-like helicases superfamily XB05_14085 SM00490 helicase superfamily c-terminal domain XB05_14120 SM00986 Uracil DNA glycosylase superfamily XB05_14120 SM00987 UreE urease accessory protein, C-terminal domain XB05_14125 SM00448 cheY-homologous receiver domain XB05_14135 SM00382 ATPases associated with a variety of cellular activities XB05_14140 SM00487 DEAD-like helicases superfamily XB05_14140 SM00490 helicase superfamily c-terminal domain XB05_14150 SM00357 Cold shock protein domain XB05_14150 SM00382 ATPases associated with a variety of cellular activities XB05_14150 SM00959 Rho termination factor, N-terminal domain XB05_14175 SM00257 Lysin motif XB05_14205 SM01150 XB05_14205 XB05_14225 SM00054 EF-hand, calcium binding motif XB05_14260 SM00644 XB05_14260 XB05_14270 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XB05_14305 SM01217 XB05_14305 XB05_14310 SM00905 Dihydroneopterin aldolase XB05_14335 SM00400 zinc finger XB05_14335 SM00493 XB05_14335 XB05_14335 SM00766 DNA primase DnaG DnaB-binding XB05_14440 SM00363 S4 RNA-binding domain XB05_14485 SM00470 ParB-like nuclease domain XB05_14510 SM01259 XB05_14510 XB05_14540 SM00836 DALR anticodon binding domain XB05_14540 SM01016 Arginyl tRNA synthetase N terminal dom XB05_14570 SM00823 Phosphopantetheine attachment site XB05_14570 SM00824 Thioesterase XB05_14605 SM00938 Nitrogen regulatory protein P-II XB05_14720 SM00052 Putative diguanylate phosphodiesterase XB05_14780 SM00448 cheY-homologous receiver domain XB05_14780 SM00862 Transcriptional regulatory protein, C terminal XB05_14785 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_14785 SM00387 Histidine kinase-like ATPases XB05_14785 SM00388 His Kinase A (phosphoacceptor) domain XB05_14805 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XB05_14850 SM01060 XB05_14850 XB05_14865 SM00421 helix_turn_helix, Lux Regulon XB05_14865 SM00448 cheY-homologous receiver domain XB05_14880 SM00382 ATPases associated with a variety of cellular activities XB05_14920 SM00849 Metallo-beta-lactamase superfamily XB05_14950 SM00960 Roadblock/LC7 domain XB05_15015 SM00387 Histidine kinase-like ATPases XB05_15015 SM00388 His Kinase A (phosphoacceptor) domain XB05_15020 SM00448 cheY-homologous receiver domain XB05_15020 SM00862 Transcriptional regulatory protein, C terminal XB05_15050 SM00248 ankyrin repeats XB05_15055 SM01060 XB05_15055 XB05_15065 SM00491 XB05_15065 XB05_15100 SM00342 helix_turn_helix, arabinose operon control protein XB05_15120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_15120 SM00387 Histidine kinase-like ATPases XB05_15120 SM00388 His Kinase A (phosphoacceptor) domain XB05_15125 SM00448 cheY-homologous receiver domain XB05_15125 SM00862 Transcriptional regulatory protein, C terminal XB05_15180 SM00422 helix_turn_helix, mercury resistance XB05_15285 SM00095 Transthyretin XB05_15305 SM01004 Delta-aminolevulinic acid dehydratase XB05_15345 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. XB05_15365 SM00382 ATPases associated with a variety of cellular activities XB05_15375 SM00530 Helix-turn-helix XRE-family like proteins XB05_15405 SM00382 ATPases associated with a variety of cellular activities XB05_15460 SM00881 CoA binding domain XB05_15465 SM00116 Domain in cystathionine beta-synthase and other proteins. XB05_15465 SM00924 MgtE intracellular N domain XB05_15485 SM00226 Low molecular weight phosphatase family XB05_15490 SM00248 ankyrin repeats XB05_15500 SM00825 Beta-ketoacyl synthase XB05_15525 SM00822 XB05_15525 XB05_15560 SM00563 Phosphate acyltransferases XB05_15610 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs XB05_15610 SM00474 3'-5' exonuclease XB05_15610 SM00475 5'-3' exonuclease XB05_15610 SM00482 DNA polymerase A domain XB05_15620 SM00028 Tetratricopeptide repeats XB05_15620 SM00220 Serine/Threonine protein kinases, catalytic domain XB05_15650 SM00342 helix_turn_helix, arabinose operon control protein XB05_15680 SM00155 Phospholipase D. Active site motifs. XB05_15815 SM00421 helix_turn_helix, Lux Regulon XB05_15815 SM00448 cheY-homologous receiver domain XB05_15865 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XB05_15880 SM00346 helix_turn_helix isocitrate lyase regulation XB05_15890 SM00091 PAS domain XB05_15890 SM00387 Histidine kinase-like ATPases XB05_15890 SM00388 His Kinase A (phosphoacceptor) domain XB05_15890 SM00448 cheY-homologous receiver domain XB05_15910 SM00564 beta-propeller repeat XB05_15940 SM00836 DALR anticodon binding domain XB05_15950 SM00382 ATPases associated with a variety of cellular activities XB05_16020 SM00354 helix_turn _helix lactose operon repressor XB05_16035 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XB05_16045 SM00758 XB05_16045 XB05_16045 SM01217 XB05_16045 XB05_16090 SM00612 XB05_16090 XB05_16100 SM00633 Glycosyl hydrolase family 10 XB05_16115 SM00633 Glycosyl hydrolase family 10 XB05_16160 SM00829 Enoylreductase XB05_16165 SM00563 Phosphate acyltransferases XB05_16175 SM00354 helix_turn _helix lactose operon repressor XB05_16200 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family XB05_16220 SM00729 Elongator protein 3, MiaB family, Radical SAM XB05_16240 SM00382 ATPases associated with a variety of cellular activities XB05_16280 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XB05_16280 SM00388 His Kinase A (phosphoacceptor) domain XB05_16295 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain XB05_16295 SM01232 XB05_16295 XB05_16330 SM00091 PAS domain XB05_16385 SM00347 helix_turn_helix multiple antibiotic resistance protein XB05_16420 SM00155 Phospholipase D. Active site motifs. XB05_16540 SM00237 Domains in Na-Ca exchangers and integrin-beta4 XB05_16540 SM00736 Dystroglycan-type cadherin-like domains. XB05_16540 SM00869 Autotransporter beta-domain XB05_16570 SM00382 ATPases associated with a variety of cellular activities XB05_16640 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XB05_16640 SM00091 PAS domain XB05_16640 SM00267 diguanylate cyclase XB05_16695 SM00014 Acid phosphatase homologues XB05_16705 SM00028 Tetratricopeptide repeats XB05_16725 SM00382 ATPases associated with a variety of cellular activities XB05_16725 SM00760 Bacterial dnaA protein helix-turn-helix domain XB05_16730 SM00480 DNA polymerase III beta subunit XB05_16740 SM00387 Histidine kinase-like ATPases XB05_16740 SM00433 TopoisomeraseII XB05_16755 SM00028 Tetratricopeptide repeats XB05_16795 SM00155 Phospholipase D. Active site motifs. XB05_16800 SM00729 Elongator protein 3, MiaB family, Radical SAM XB05_16830 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XB05_16830 SM00245 tail specific protease XB05_16870 SM00829 Enoylreductase XB05_16910 SM01068 Putative carbohydrate binding domain XB05_16915 SM00020 Trypsin-like serine protease XB05_16940 SM00487 DEAD-like helicases superfamily XB05_16940 SM00490 helicase superfamily c-terminal domain XB05_16995 SM00822 XB05_16995 XB05_17065 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XB05_17065 SM00387 Histidine kinase-like ATPases XB05_17065 SM00388 His Kinase A (phosphoacceptor) domain XB05_17065 SM00448 cheY-homologous receiver domain XB05_17225 SM00829 Enoylreductase XB05_17240 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen XB05_17265 SM00421 helix_turn_helix, Lux Regulon XB05_17265 SM00448 cheY-homologous receiver domain XB05_17280 SM00028 Tetratricopeptide repeats XB05_17280 SM00862 Transcriptional regulatory protein, C terminal XB05_17430 SM00642 Alpha-amylase domain XB05_17435 SM00642 Alpha-amylase domain XB05_17440 SM00642 Alpha-amylase domain XB05_17510 SM00354 helix_turn _helix lactose operon repressor XB05_17540 SM00382 ATPases associated with a variety of cellular activities XB05_17560 SM00344 helix_turn_helix ASNC type XB05_17580 SM00382 ATPases associated with a variety of cellular activities XB05_17595 SM00382 ATPases associated with a variety of cellular activities XB05_17650 SM00855 Phosphoglycerate mutase family XB05_17655 SM00867 YceI-like domain XB05_17660 SM00155 Phospholipase D. Active site motifs. XB05_17670 SM00563 Phosphate acyltransferases XB05_17680 SM00028 Tetratricopeptide repeats XB05_17700 SM01230 XB05_17700 XB05_17705 SM00938 Nitrogen regulatory protein P-II XB05_17715 SM00387 Histidine kinase-like ATPases XB05_17715 SM00388 His Kinase A (phosphoacceptor) domain XB05_17720 SM00382 ATPases associated with a variety of cellular activities XB05_17720 SM00448 cheY-homologous receiver domain XB05_17785 SM00450 Rhodanese Homology Domain XB05_17810 SM00387 Histidine kinase-like ATPases XB05_17810 SM00388 His Kinase A (phosphoacceptor) domain XB05_17815 SM00382 ATPases associated with a variety of cellular activities XB05_17815 SM00448 cheY-homologous receiver domain XB05_17875 SM00028 Tetratricopeptide repeats XB05_17875 SM00862 Transcriptional regulatory protein, C terminal XB05_17940 SM00563 Phosphate acyltransferases XB05_17970 SM00342 helix_turn_helix, arabinose operon control protein XB05_17995 SM00100 Cyclic nucleotide-monophosphate binding domain XB05_17995 SM00267 diguanylate cyclase XB05_18020 SM00878 Biotin carboxylase C-terminal domain XB05_18045 SM00953 XB05_18045 XB05_18085 SM00833 Cobalamin synthesis protein cobW C-terminal domain XB05_18110 SM00347 helix_turn_helix multiple antibiotic resistance protein XB05_18145 SM00829 Enoylreductase XB05_18170 SM00487 DEAD-like helicases superfamily XB05_18170 SM00490 helicase superfamily c-terminal domain XB05_18170 SM00847 Helicase associated domain (HA2) Add an annotation XB05_18175 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_18175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_18240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_18375 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XB05_18380 SM00347 helix_turn_helix multiple antibiotic resistance protein XB05_18400 SM00342 helix_turn_helix, arabinose operon control protein XB05_18430 SM00420 helix_turn_helix, Deoxyribose operon repressor XB05_18430 SM01134 XB05_18430 XB05_18440 SM00345 helix_turn_helix gluconate operon transcriptional repressor XB05_18440 SM00895 XB05_18440 XB05_18450 SM00882 Coenzyme A transferase XB05_18455 SM00882 Coenzyme A transferase XB05_18475 SM00998 Adenylosuccinate lyase C-terminus XB05_18495 SM00346 helix_turn_helix isocitrate lyase regulation XB05_18500 SM00090 RIO-like kinase XB05_18515 SM01228 XB05_18515 XB05_18565 SM00729 Elongator protein 3, MiaB family, Radical SAM XB05_18565 SM00876 Biotin and Thiamin Synthesis associated domain XB05_18610 SM00267 diguanylate cyclase XB05_18620 SM00642 Alpha-amylase domain XB05_18625 SM00642 Alpha-amylase domain XB05_18635 SM00642 Alpha-amylase domain XB05_18645 SM00642 Alpha-amylase domain XB05_18700 SM00487 DEAD-like helicases superfamily XB05_18700 SM00490 helicase superfamily c-terminal domain XB05_18715 SM00326 Src homology 3 domains XB05_18720 SM00861 Transketolase, pyrimidine binding domain XB05_18750 SM00347 helix_turn_helix multiple antibiotic resistance protein XB05_18850 SM00271 DnaJ molecular chaperone homology domain XB05_18870 SM00046 Diacylglycerol kinase catalytic domain (presumed) XB05_18920 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XB05_18920 SM00387 Histidine kinase-like ATPases XB05_18920 SM00388 His Kinase A (phosphoacceptor) domain XB05_18920 SM00448 cheY-homologous receiver domain XB05_18925 SM00448 cheY-homologous receiver domain XB05_18930 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XB05_18930 SM00387 Histidine kinase-like ATPases XB05_18930 SM00388 His Kinase A (phosphoacceptor) domain XB05_18945 SM01034 Sensors of blue-light using FAD XB05_19045 SM00014 Acid phosphatase homologues XB05_19045 SM00869 Autotransporter beta-domain XB05_19060 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_19060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_19085 SM00448 cheY-homologous receiver domain XB05_19085 SM00862 Transcriptional regulatory protein, C terminal XB05_19090 SM00387 Histidine kinase-like ATPases XB05_19090 SM00388 His Kinase A (phosphoacceptor) domain XB05_19095 SM00054 EF-hand, calcium binding motif XB05_19190 SM00448 cheY-homologous receiver domain XB05_19190 SM00862 Transcriptional regulatory protein, C terminal XB05_19195 SM00387 Histidine kinase-like ATPases XB05_19215 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XB05_19345 SM00448 cheY-homologous receiver domain XB05_19345 SM00862 Transcriptional regulatory protein, C terminal XB05_19350 SM00387 Histidine kinase-like ATPases XB05_19450 SM00903 Flavin reductase like domain XB05_19470 SM00100 Cyclic nucleotide-monophosphate binding domain XB05_19470 SM00419 helix_turn_helix, cAMP Regulatory protein XB05_19525 SM00073 Histidine Phosphotransfer domain XB05_19525 SM00387 Histidine kinase-like ATPases XB05_19525 SM00388 His Kinase A (phosphoacceptor) domain XB05_19525 SM00448 cheY-homologous receiver domain XB05_19530 SM00052 Putative diguanylate phosphodiesterase XB05_19530 SM00267 diguanylate cyclase XB05_19530 SM00448 cheY-homologous receiver domain XB05_19580 SM00563 Phosphate acyltransferases XB05_19600 SM01209 XB05_19600 XB05_19600 SM01210 XB05_19600 XB05_19605 SM00798 AICARFT/IMPCHase bienzyme XB05_19605 SM00851 MGS-like domain XB05_19625 SM00530 Helix-turn-helix XRE-family like proteins XB05_19650 SM00878 Biotin carboxylase C-terminal domain XB05_19685 SM00883 Chaperonin 10 Kd subunit XB05_19730 SM00965 Secretin and TonB N terminus short domain XB05_19780 SM00867 YceI-like domain XB05_19825 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XB05_19835 SM00345 helix_turn_helix gluconate operon transcriptional repressor XB05_19835 SM00895 XB05_19835 XB05_19955 SM00248 ankyrin repeats XB05_19980 SM00342 helix_turn_helix, arabinose operon control protein XB05_20020 SM00345 helix_turn_helix gluconate operon transcriptional repressor XB05_20085 SM00267 diguanylate cyclase XB05_20125 SM00062 Bacterial periplasmic substrate-binding proteins XB05_20210 SM00354 helix_turn _helix lactose operon repressor XB05_20220 SM00345 helix_turn_helix gluconate operon transcriptional repressor XB05_20220 SM00866 XB05_20220 XB05_20300 SM00382 ATPases associated with a variety of cellular activities XB05_20325 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. XB05_20355 SM00387 Histidine kinase-like ATPases XB05_20355 SM00388 His Kinase A (phosphoacceptor) domain XB05_20355 SM00448 cheY-homologous receiver domain XB05_20360 SM00448 cheY-homologous receiver domain XB05_20365 SM00387 Histidine kinase-like ATPases XB05_20365 SM00388 His Kinase A (phosphoacceptor) domain XB05_20370 SM00749 bacterial OsmY and nodulation domain XB05_20380 SM01350 XB05_20380 XB05_20435 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XB05_20435 SM00245 tail specific protease XB05_20440 SM00729 Elongator protein 3, MiaB family, Radical SAM XB05_20460 SM00936 Penicillin-binding protein 5, C-terminal domain XB05_20475 SM00710 Parallel beta-helix repeats XB05_20500 SM00268 Actin XB05_20510 SM00382 ATPases associated with a variety of cellular activities XB05_20520 SM00829 Enoylreductase XB05_20535 SM00062 Bacterial periplasmic substrate-binding proteins XB05_20535 SM00248 ankyrin repeats XB05_20540 SM00564 beta-propeller repeat XB05_20555 SM01263 XB05_20555 XB05_20560 SM00267 diguanylate cyclase XB05_20590 SM00382 ATPases associated with a variety of cellular activities XB05_20590 SM01086 C-terminal, D2-small domain, of ClpB protein XB05_20675 SM00448 cheY-homologous receiver domain XB05_20675 SM00850 LytTr DNA-binding domain XB05_20700 SM00267 diguanylate cyclase XB05_20710 SM00637 XB05_20710 XB05_20715 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XB05_20715 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XB05_20715 SM01049 XB05_20715 XB05_20720 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XB05_20720 SM00091 PAS domain XB05_20720 SM00267 diguanylate cyclase XB05_20730 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XB05_20760 SM00387 Histidine kinase-like ATPases XB05_20760 SM00388 His Kinase A (phosphoacceptor) domain XB05_20765 SM00448 cheY-homologous receiver domain XB05_20765 SM00862 Transcriptional regulatory protein, C terminal XB05_20860 SM00842 Cell division protein FtsA XB05_20865 SM00864 Tubulin/FtsZ family, GTPase domain XB05_20865 SM00865 Tubulin/FtsZ family, C-terminal domain XB05_20885 SM00957 SecA DEAD-like domain XB05_20885 SM00958 SecA preprotein cross-linking domain XB05_20915 SM00829 Enoylreductase XB05_20925 SM00642 Alpha-amylase domain XB05_20950 SM00996 S-adenosyl-L-homocysteine hydrolase XB05_20950 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XB05_21075 SM00382 ATPases associated with a variety of cellular activities XB05_21095 SM00382 ATPases associated with a variety of cellular activities XB05_21105 SM00448 cheY-homologous receiver domain XB05_21105 SM00862 Transcriptional regulatory protein, C terminal XB05_21110 SM00387 Histidine kinase-like ATPases XB05_21110 SM00388 His Kinase A (phosphoacceptor) domain XB05_21175 SM00650 Ribosomal RNA adenine dimethylases XB05_21235 SM00345 helix_turn_helix gluconate operon transcriptional repressor XB05_21235 SM00895 XB05_21235 XB05_21270 SM00347 helix_turn_helix multiple antibiotic resistance protein XB05_21335 SM00448 cheY-homologous receiver domain XB05_21340 SM00387 Histidine kinase-like ATPases XB05_21340 SM00388 His Kinase A (phosphoacceptor) domain XB05_21340 SM00448 cheY-homologous receiver domain XB05_21345 SM00421 helix_turn_helix, Lux Regulon XB05_21410 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs XB05_21410 SM00475 5'-3' exonuclease XB05_21440 SM01002 Alanine dehydrogenase/PNT, C-terminal domain XB05_21440 SM01003 Alanine dehydrogenase/PNT, N-terminal domain XB05_21550 SM00852 Probable molybdopterin binding domain XB05_21555 SM00028 Tetratricopeptide repeats XB05_21560 SM00937 XB05_21560 XB05_21570 SM00028 Tetratricopeptide repeats XB05_21590 SM01400 XB05_21590 XB05_21640 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. XB05_21640 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. XB05_21645 SM00649 Ribosomal protein L11/L12 XB05_21670 SM00663 RNA polymerase I subunit A N-terminus XB05_21685 SM00838 Elongation factor G C-terminus XB05_21685 SM00889 Elongation factor G, domain IV XB05_21695 SM01403 XB05_21695 XB05_21715 SM01382 XB05_21715 XB05_21715 SM01383 XB05_21715 XB05_21730 SM00322 K homology RNA-binding domain XB05_21750 SM01374 XB05_21750 XB05_21755 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. XB05_21815 SM00363 S4 RNA-binding domain XB05_21815 SM01390 XB05_21815 XB05_21820 SM00662 RNA polymerases D XB05_21855 SM00838 Elongation factor G C-terminus XB05_21890 SM00829 Enoylreductase XB05_21935 SM00382 ATPases associated with a variety of cellular activities XB05_21945 SM00829 Enoylreductase XB05_21960 SM00855 Phosphoglycerate mutase family XB05_22010 SM00014 Acid phosphatase homologues XB05_22030 SM00091 PAS domain XB05_22030 SM00387 Histidine kinase-like ATPases XB05_22030 SM00388 His Kinase A (phosphoacceptor) domain XB05_22035 SM00448 cheY-homologous receiver domain XB05_22035 SM00862 Transcriptional regulatory protein, C terminal XB05_22055 SM01329 XB05_22055 XB05_22165 SM00530 Helix-turn-helix XRE-family like proteins