locus-tag class description JM952_00005 PF00308 Bacterial dnaA protein JM952_00005 PF08299 Bacterial dnaA protein helix-turn-helix JM952_00005 PF11638 DnaA N-terminal domain JM952_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JM952_00010 PF02767 DNA polymerase III beta subunit, central domain JM952_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JM952_00015 PF02463 RecF/RecN/SMC N terminal domain JM952_00020 PF00204 DNA gyrase B JM952_00020 PF00986 DNA gyrase B subunit, carboxyl terminus JM952_00020 PF18053 DNA gyrase B subunit insert domain JM952_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_00020 PF01751 Toprim domain JM952_00030 PF01435 Peptidase family M48 JM952_00040 PF03544 Gram-negative bacterial TonB protein C-terminal JM952_00045 PF01618 MotA/TolQ/ExbB proton channel family JM952_00050 PF02472 Biopolymer transport protein ExbD/TolR JM952_00055 PF02472 Biopolymer transport protein ExbD/TolR JM952_00060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JM952_00070 PF13091 PLD-like domain JM952_00070 PF13396 Phospholipase_D-nuclease N-terminal JM952_00075 PF04055 Radical SAM superfamily JM952_00085 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JM952_00100 PF01842 ACT domain JM952_00100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JM952_00100 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JM952_00105 PF03572 Peptidase family S41 JM952_00105 PF13180 PDZ domain JM952_00110 PF01551 Peptidase family M23 JM952_00120 PF04389 Peptidase family M28 JM952_00135 PF00150 Cellulase (glycosyl hydrolase family 5) JM952_00140 PF00150 Cellulase (glycosyl hydrolase family 5) JM952_00145 PF00150 Cellulase (glycosyl hydrolase family 5) JM952_00150 PF08240 Alcohol dehydrogenase GroES-like domain JM952_00150 PF00107 Zinc-binding dehydrogenase JM952_00165 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JM952_00165 PF07992 Pyridine nucleotide-disulphide oxidoreductase JM952_00170 PF01645 Conserved region in glutamate synthase JM952_00170 PF01493 GXGXG motif JM952_00170 PF04898 Glutamate synthase central domain JM952_00170 PF00310 Glutamine amidotransferases class-II JM952_00185 PF00398 Ribosomal RNA adenine dimethylase JM952_00195 PF02678 Pirin JM952_00195 PF05726 Pirin C-terminal cupin domain JM952_00205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_00205 PF03466 LysR substrate binding domain JM952_00220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_00220 PF03466 LysR substrate binding domain JM952_00280 PF00271 Helicase conserved C-terminal domain JM952_00280 PF00270 DEAD/DEAH box helicase JM952_00280 PF09369 Domain of unknown function (DUF1998) JM952_00285 PF02661 Fic/DOC family JM952_00285 PF13784 Fic/DOC family N-terminal JM952_00290 PF03006 Haemolysin-III related JM952_00360 PF01872 RibD C-terminal domain JM952_00365 PF05532 CsbD-like JM952_00395 PF16485 Protealysin propeptide JM952_00395 PF02868 Thermolysin metallopeptidase, alpha-helical domain JM952_00395 PF01447 Thermolysin metallopeptidase, catalytic domain JM952_00405 PF13344 Haloacid dehalogenase-like hydrolase JM952_00405 PF00293 NUDIX domain JM952_00410 PF01594 AI-2E family transporter JM952_00415 PF07859 alpha/beta hydrolase fold JM952_00425 PF00085 Thioredoxin JM952_00430 PF00083 Sugar (and other) transporter JM952_00430 PF08946 Osmosensory transporter coiled coil JM952_00470 PF17863 AAA lid domain JM952_00470 PF07726 ATPase family associated with various cellular activities (AAA) JM952_00500 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JM952_00505 PF00155 Aminotransferase class I and II JM952_00510 PF07715 TonB-dependent Receptor Plug Domain JM952_00510 PF00593 TonB dependent receptor JM952_00525 PF00171 Aldehyde dehydrogenase family JM952_00545 PF02735 Ku70/Ku80 beta-barrel domain JM952_00550 PF04679 ATP dependent DNA ligase C terminal region JM952_00550 PF01068 ATP dependent DNA ligase domain JM952_00550 PF13298 DNA polymerase Ligase (LigD) JM952_00555 PF01070 FMN-dependent dehydrogenase JM952_00580 PF18500 CadC C-terminal domain 1 JM952_00580 PF00486 Transcriptional regulatory protein, C terminal JM952_00585 PF12241 Trans-2-enoyl-CoA reductase catalytic region JM952_00585 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JM952_00585 PF07055 Enoyl reductase FAD binding domain JM952_00600 PF00294 pfkB family carbohydrate kinase JM952_00615 PF01095 Pectinesterase JM952_00685 PF11896 Domain of unknown function (DUF3416) JM952_00685 PF00128 Alpha amylase, catalytic domain JM952_00690 PF00128 Alpha amylase, catalytic domain JM952_00690 PF16657 Maltogenic Amylase, C-terminal domain JM952_00695 PF02806 Alpha amylase, C-terminal all-beta domain JM952_00695 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JM952_00695 PF00128 Alpha amylase, catalytic domain JM952_00725 PF00248 Aldo/keto reductase family JM952_00730 PF13472 GDSL-like Lipase/Acylhydrolase family JM952_00735 PF00135 Carboxylesterase family JM952_00740 PF07859 alpha/beta hydrolase fold JM952_00740 PF13472 GDSL-like Lipase/Acylhydrolase family JM952_00750 PF03480 Bacterial extracellular solute-binding protein, family 7 JM952_00760 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JM952_00765 PF04616 Glycosyl hydrolases family 43 JM952_00765 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain JM952_00770 PF00356 Bacterial regulatory proteins, lacI family JM952_00775 PF04962 KduI/IolB family JM952_00790 PF00657 GDSL-like Lipase/Acylhydrolase JM952_00800 PF00351 Biopterin-dependent aromatic amino acid hydroxylase JM952_00805 PF01037 Lrp/AsnC ligand binding domain JM952_00815 PF07660 Secretin and TonB N terminus short domain JM952_00815 PF07715 TonB-dependent Receptor Plug Domain JM952_00815 PF00593 TonB dependent receptor JM952_00820 PF01734 Patatin-like phospholipase JM952_00830 PF00005 ABC transporter JM952_00845 PF00005 ABC transporter JM952_00845 PF00571 CBS domain JM952_00850 PF00528 Binding-protein-dependent transport system inner membrane component JM952_00860 PF03781 Sulfatase-modifying factor enzyme 1 JM952_00860 PF12867 DinB superfamily JM952_00865 PF10017 Histidine-specific methyltransferase, SAM-dependent JM952_00895 PF01883 Iron-sulfur cluster assembly protein JM952_00895 PF10609 NUBPL iron-transfer P-loop NTPase JM952_00900 PF00300 Histidine phosphatase superfamily (branch 1) JM952_00905 PF04264 YceI-like domain JM952_00910 PF13091 PLD-like domain JM952_00915 PF03061 Thioesterase superfamily JM952_00935 PF01161 Phosphatidylethanolamine-binding protein JM952_00945 PF02673 Bacitracin resistance protein BacA JM952_00950 PF00120 Glutamine synthetase, catalytic domain JM952_00950 PF03951 Glutamine synthetase, beta-Grasp domain JM952_00955 PF00543 Nitrogen regulatory protein P-II JM952_00960 PF00909 Ammonium Transporter Family JM952_00965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_00965 PF00512 His Kinase A (phospho-acceptor) domain JM952_00965 PF00989 PAS fold JM952_00970 PF02954 Bacterial regulatory protein, Fis family JM952_00970 PF00072 Response regulator receiver domain JM952_00970 PF00158 Sigma-54 interaction domain JM952_00980 PF00080 Copper/zinc superoxide dismutase (SODC) JM952_00985 PF00080 Copper/zinc superoxide dismutase (SODC) JM952_00990 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JM952_01000 PF02803 Thiolase, C-terminal domain JM952_01000 PF00108 Thiolase, N-terminal domain JM952_01040 PF00581 Rhodanese-like domain JM952_01045 PF02556 Preprotein translocase subunit SecB JM952_01050 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JM952_01050 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JM952_01060 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JM952_01060 PF00205 Thiamine pyrophosphate enzyme, central domain JM952_01060 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JM952_01065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_01065 PF00512 His Kinase A (phospho-acceptor) domain JM952_01070 PF00158 Sigma-54 interaction domain JM952_01070 PF00072 Response regulator receiver domain JM952_01070 PF02954 Bacterial regulatory protein, Fis family JM952_01085 PF07690 Major Facilitator Superfamily JM952_01090 PF00588 SpoU rRNA Methylase family JM952_01105 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JM952_01105 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JM952_01110 PF02661 Fic/DOC family JM952_01110 PF13784 Fic/DOC family N-terminal JM952_01115 PF00561 alpha/beta hydrolase fold JM952_01120 PF03692 Putative zinc- or iron-chelating domain JM952_01125 PF00501 AMP-binding enzyme JM952_01130 PF00486 Transcriptional regulatory protein, C terminal JM952_01130 PF00072 Response regulator receiver domain JM952_01145 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family JM952_01160 PF07478 D-ala D-ala ligase C-terminus JM952_01160 PF01820 D-ala D-ala ligase N-terminus JM952_01170 PF03109 ABC1 family JM952_01175 PF00849 RNA pseudouridylate synthase JM952_01185 PF00472 RF-1 domain JM952_01200 PF01432 Peptidase family M3 JM952_01210 PF12706 Beta-lactamase superfamily domain JM952_01225 PF12833 Helix-turn-helix domain JM952_01230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_01230 PF03466 LysR substrate binding domain JM952_01235 PF01274 Malate synthase JM952_01240 PF00463 Isocitrate lyase family JM952_01245 PF00990 Diguanylate cyclase, GGDEF domain JM952_01265 PF00326 Prolyl oligopeptidase family JM952_01270 PF02785 Biotin carboxylase C-terminal domain JM952_01270 PF00289 Biotin carboxylase, N-terminal domain JM952_01270 PF00364 Biotin-requiring enzyme JM952_01270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JM952_01270 PF18140 Propionyl-coenzyme A carboxylase BT domain JM952_01275 PF01039 Carboxyl transferase domain JM952_01280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JM952_01280 PF02770 Acyl-CoA dehydrogenase, middle domain JM952_01280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JM952_01320 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JM952_01335 PF07683 Cobalamin synthesis protein cobW C-terminal domain JM952_01335 PF02492 CobW/HypB/UreG, nucleotide-binding domain JM952_01355 PF03969 AFG1-like ATPase JM952_01365 PF01047 MarR family JM952_01370 PF02566 OsmC-like protein JM952_01400 PF00248 Aldo/keto reductase family JM952_01405 PF16884 N-terminal domain of oxidoreductase JM952_01405 PF00107 Zinc-binding dehydrogenase JM952_01410 PF00248 Aldo/keto reductase family JM952_01420 PF00849 RNA pseudouridylate synthase JM952_01430 PF00270 DEAD/DEAH box helicase JM952_01430 PF04408 Helicase associated domain (HA2) JM952_01430 PF08482 ATP-dependent helicase C-terminal JM952_01430 PF00271 Helicase conserved C-terminal domain JM952_01435 PF00672 HAMP domain JM952_01435 PF02203 Tar ligand binding domain homologue JM952_01435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_01440 PF07308 Protein of unknown function (DUF1456) JM952_01445 PF00576 HIUase/Transthyretin family JM952_01450 PF13454 FAD-NAD(P)-binding JM952_01470 PF00266 Aminotransferase class-V JM952_01475 PF07687 Peptidase dimerisation domain JM952_01475 PF01546 Peptidase family M20/M25/M40 JM952_01480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_01480 PF03466 LysR substrate binding domain JM952_01490 PF07690 Major Facilitator Superfamily JM952_01500 PF13091 PLD-like domain JM952_01510 PF01425 Amidase JM952_01515 PF01156 Inosine-uridine preferring nucleoside hydrolase JM952_01525 PF00860 Permease family JM952_01530 PF00111 2Fe-2S iron-sulfur cluster binding domain JM952_01535 PF00355 Rieske [2Fe-2S] domain JM952_01540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_01540 PF03466 LysR substrate binding domain JM952_01545 PF01026 TatD related DNase JM952_01555 PF03466 LysR substrate binding domain JM952_01555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_01560 PF07690 Major Facilitator Superfamily JM952_01575 PF02146 Sir2 family JM952_01580 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JM952_01585 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JM952_01585 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JM952_01595 PF00551 Formyl transferase JM952_01605 PF00106 short chain dehydrogenase JM952_01615 PF02219 Methylenetetrahydrofolate reductase JM952_01620 PF03466 LysR substrate binding domain JM952_01620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_01625 PF03358 NADPH-dependent FMN reductase JM952_01635 PF01717 Cobalamin-independent synthase, Catalytic domain JM952_01635 PF08267 Cobalamin-independent synthase, N-terminal domain JM952_01650 PF05368 NmrA-like family JM952_01655 PF01638 HxlR-like helix-turn-helix JM952_01665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_01665 PF00672 HAMP domain JM952_01750 PF13495 Phage integrase, N-terminal SAM-like domain JM952_01750 PF00589 Phage integrase family JM952_01760 PF00920 Dehydratase family JM952_01770 PF03692 Putative zinc- or iron-chelating domain JM952_01780 PF00132 Bacterial transferase hexapeptide (six repeats) JM952_01790 PF07690 Major Facilitator Superfamily JM952_01795 PF11871 Domain of unknown function (DUF3391) JM952_01795 PF01966 HD domain JM952_01815 PF00171 Aldehyde dehydrogenase family JM952_01825 PF01494 FAD binding domain JM952_01835 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JM952_01835 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JM952_01840 PF00230 Major intrinsic protein JM952_01845 PF01266 FAD dependent oxidoreductase JM952_01845 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JM952_01850 PF08220 DeoR-like helix-turn-helix domain JM952_01850 PF00455 DeoR C terminal sensor domain JM952_01855 PF00970 Oxidoreductase FAD-binding domain JM952_01855 PF00111 2Fe-2S iron-sulfur cluster binding domain JM952_01860 PF00355 Rieske [2Fe-2S] domain JM952_01865 PF01144 Coenzyme A transferase JM952_01870 PF01144 Coenzyme A transferase JM952_01875 PF02803 Thiolase, C-terminal domain JM952_01875 PF00108 Thiolase, N-terminal domain JM952_01880 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal JM952_01880 PF00775 Dioxygenase JM952_01885 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal JM952_01885 PF00775 Dioxygenase JM952_01890 PF00206 Lyase JM952_01890 PF10397 Adenylosuccinate lyase C-terminus JM952_01895 PF12146 Serine aminopeptidase, S33 JM952_01900 PF02627 Carboxymuconolactone decarboxylase family JM952_01910 PF01614 Bacterial transcriptional regulator JM952_01910 PF09339 IclR helix-turn-helix domain JM952_01920 PF07859 alpha/beta hydrolase fold JM952_01925 PF10677 Protein of unknown function (DUF2490) JM952_01930 PF13932 GidA associated domain JM952_01930 PF01134 Glucose inhibited division protein A JM952_01940 PF00291 Pyridoxal-phosphate dependent enzyme JM952_01960 PF13649 Methyltransferase domain JM952_01970 PF12697 Alpha/beta hydrolase family JM952_01980 PF00155 Aminotransferase class I and II JM952_01985 PF04055 Radical SAM superfamily JM952_01985 PF06968 Biotin and Thiamin Synthesis associated domain JM952_01995 PF01040 UbiA prenyltransferase family JM952_02005 PF00589 Phage integrase family JM952_02005 PF13356 Arm DNA-binding domain JM952_02015 PF07715 TonB-dependent Receptor Plug Domain JM952_02015 PF00593 TonB dependent receptor JM952_02020 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JM952_02020 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JM952_02035 PF07715 TonB-dependent Receptor Plug Domain JM952_02035 PF00593 TonB dependent receptor JM952_02055 PF12795 Mechanosensitive ion channel porin domain JM952_02055 PF12794 Mechanosensitive ion channel inner membrane domain 1 JM952_02055 PF00924 Mechanosensitive ion channel JM952_02060 PF00884 Sulfatase JM952_02070 PF03109 ABC1 family JM952_02075 PF05661 Protein of unknown function (DUF808) JM952_02080 PF02638 Glycosyl hydrolase-like 10 JM952_02085 PF00990 Diguanylate cyclase, GGDEF domain JM952_02090 PF08323 Starch synthase catalytic domain JM952_02090 PF00534 Glycosyl transferases group 1 JM952_02095 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JM952_02095 PF00128 Alpha amylase, catalytic domain JM952_02095 PF02806 Alpha amylase, C-terminal all-beta domain JM952_02100 PF00128 Alpha amylase, catalytic domain JM952_02100 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JM952_02100 PF11941 Domain of unknown function (DUF3459) JM952_02105 PF02446 4-alpha-glucanotransferase JM952_02110 PF00128 Alpha amylase, catalytic domain JM952_02120 PF00128 Alpha amylase, catalytic domain JM952_02120 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JM952_02125 PF13460 NAD(P)H-binding JM952_02140 PF06903 VirK protein JM952_02145 PF02321 Outer membrane efflux protein JM952_02150 PF00440 Bacterial regulatory proteins, tetR family JM952_02160 PF00873 AcrB/AcrD/AcrF family JM952_02175 PF00270 DEAD/DEAH box helicase JM952_02175 PF00271 Helicase conserved C-terminal domain JM952_02185 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JM952_02185 PF00364 Biotin-requiring enzyme JM952_02185 PF02817 e3 binding domain JM952_02195 PF02780 Transketolase, C-terminal domain JM952_02195 PF02779 Transketolase, pyrimidine binding domain JM952_02200 PF00676 Dehydrogenase E1 component JM952_02210 PF03301 Tryptophan 2,3-dioxygenase JM952_02215 PF00854 POT family JM952_02225 PF01047 MarR family JM952_02230 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JM952_02235 PF04480 Protein of unknown function (DUF559) JM952_02240 PF04209 homogentisate 1,2-dioxygenase JM952_02260 PF03334 Na+/H+ antiporter subunit JM952_02265 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) JM952_02275 PF00361 Proton-conducting membrane transporter JM952_02280 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JM952_02285 PF13244 Domain of unknown function (DUF4040) JM952_02285 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter JM952_02285 PF00361 Proton-conducting membrane transporter JM952_02285 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JM952_02325 PF01259 SAICAR synthetase JM952_02330 PF00684 DnaJ central domain JM952_02330 PF00226 DnaJ domain JM952_02330 PF01556 DnaJ C terminal domain JM952_02340 PF00834 Ribulose-phosphate 3 epimerase family JM952_02350 PF00781 Diacylglycerol kinase catalytic domain JM952_02355 PF00425 chorismate binding enzyme JM952_02355 PF04715 Anthranilate synthase component I, N terminal region JM952_02360 PF00155 Aminotransferase class I and II JM952_02370 PF00117 Glutamine amidotransferase class-I JM952_02375 PF01613 Flavin reductase like domain JM952_02380 PF02885 Glycosyl transferase family, helical bundle domain JM952_02380 PF00591 Glycosyl transferase family, a/b domain JM952_02385 PF00218 Indole-3-glycerol phosphate synthase JM952_02395 PF00027 Cyclic nucleotide-binding domain JM952_02395 PF00325 Bacterial regulatory proteins, crp family JM952_02400 PF02675 S-adenosylmethionine decarboxylase JM952_02405 PF00893 Small Multidrug Resistance protein JM952_02410 PF03232 Ubiquinone biosynthesis protein COQ7 JM952_02415 PF00572 Ribosomal protein L13 JM952_02420 PF00380 Ribosomal protein S9/S16 JM952_02435 PF00293 NUDIX domain JM952_02445 PF00210 Ferritin-like domain JM952_02450 PF00672 HAMP domain JM952_02450 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JM952_02450 PF00512 His Kinase A (phospho-acceptor) domain JM952_02450 PF01627 Hpt domain JM952_02450 PF00072 Response regulator receiver domain JM952_02450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_02455 PF00072 Response regulator receiver domain JM952_02455 PF00486 Transcriptional regulatory protein, C terminal JM952_02475 PF01521 Iron-sulphur cluster biosynthesis JM952_02480 PF00293 NUDIX domain JM952_02480 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain JM952_02480 PF09297 NADH pyrophosphatase zinc ribbon domain JM952_02485 PF17113 Regulatory signalling modulator protein AmpE JM952_02485 PF03186 CobD/Cbib protein JM952_02520 PF07690 Major Facilitator Superfamily JM952_02530 PF12805 FUSC-like inner membrane protein yccS JM952_02535 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JM952_02535 PF02843 Phosphoribosylglycinamide synthetase, C domain JM952_02535 PF02844 Phosphoribosylglycinamide synthetase, N domain JM952_02545 PF01808 AICARFT/IMPCHase bienzyme JM952_02545 PF02142 MGS-like domain JM952_02550 PF01066 CDP-alcohol phosphatidyltransferase JM952_02555 PF12147 Putative methyltransferase JM952_02555 PF12146 Serine aminopeptidase, S33 JM952_02560 PF00782 Dual specificity phosphatase, catalytic domain JM952_02595 PF00818 Ice nucleation protein repeat JM952_02595 PF00818 Ice nucleation protein repeat JM952_02600 PF02954 Bacterial regulatory protein, Fis family JM952_02610 PF01381 Helix-turn-helix JM952_02635 PF02785 Biotin carboxylase C-terminal domain JM952_02635 PF00289 Biotin carboxylase, N-terminal domain JM952_02635 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JM952_02645 PF00364 Biotin-requiring enzyme JM952_02650 PF01220 Dehydroquinase class II JM952_02655 PF02683 Cytochrome C biogenesis protein transmembrane region JM952_02655 PF11412 Disulphide bond corrector protein DsbC JM952_02660 PF03091 CutA1 divalent ion tolerance protein JM952_02665 PF04231 Endonuclease I JM952_02670 PF00166 Chaperonin 10 Kd subunit JM952_02675 PF00118 TCP-1/cpn60 chaperonin family JM952_02680 PF00271 Helicase conserved C-terminal domain JM952_02680 PF00176 SNF2 family N-terminal domain JM952_02685 PF13749 Putative ATP-dependent DNA helicase recG C-terminal JM952_02685 PF00270 DEAD/DEAH box helicase JM952_02685 PF17191 RecG wedge domain JM952_02695 PF01609 Transposase DDE domain JM952_02695 PF05598 Transposase domain (DUF772) JM952_02705 PF01738 Dienelactone hydrolase family JM952_02750 PF01609 Transposase DDE domain JM952_02750 PF05598 Transposase domain (DUF772) JM952_02755 PF00793 DAHP synthetase I family JM952_02765 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain JM952_02765 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain JM952_02780 PF08450 SMP-30/Gluconolactonase/LRE-like region JM952_02795 PF16220 Domain of unknown function (DUF4880) JM952_02795 PF04773 FecR protein JM952_02805 PF07715 TonB-dependent Receptor Plug Domain JM952_02805 PF07660 Secretin and TonB N terminus short domain JM952_02805 PF00593 TonB dependent receptor JM952_02825 PF08335 GlnD PII-uridylyltransferase JM952_02825 PF03710 Glutamate-ammonia ligase adenylyltransferase JM952_02840 PF02592 Putative vitamin uptake transporter JM952_02860 PF00881 Nitroreductase family JM952_02865 PF04264 YceI-like domain JM952_02875 PF13847 Methyltransferase domain JM952_02875 PF03551 Transcriptional regulator PadR-like family JM952_02880 PF16957 Malonate decarboxylase, alpha subunit, transporter JM952_02885 PF06857 Malonate decarboxylase delta subunit (MdcD) JM952_02890 PF01039 Carboxyl transferase domain JM952_02900 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG JM952_02905 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase JM952_02910 PF00698 Acyl transferase domain JM952_02910 PF00109 Beta-ketoacyl synthase, N-terminal domain JM952_02910 PF02801 Beta-ketoacyl synthase, C-terminal domain JM952_02910 PF08659 KR domain JM952_02910 PF00550 Phosphopantetheine attachment site JM952_02910 PF16197 Ketoacyl-synthetase C-terminal extension JM952_02920 PF00392 Bacterial regulatory proteins, gntR family JM952_02920 PF07729 FCD domain JM952_02955 PF07745 Glycosyl hydrolase family 53 JM952_02960 PF00456 Transketolase, thiamine diphosphate binding domain JM952_02960 PF17831 Pyruvate dehydrogenase E1 component middle domain JM952_02965 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JM952_03040 PF13409 Glutathione S-transferase, N-terminal domain JM952_03065 PF01433 Peptidase family M1 domain JM952_03065 PF11838 ERAP1-like C-terminal domain JM952_03100 PF03176 MMPL family JM952_03100 PF12823 Domain of unknown function (DUF3817) JM952_03110 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region JM952_03110 PF00326 Prolyl oligopeptidase family JM952_03115 PF07759 Protein of unknown function (DUF1615) JM952_03120 PF00990 Diguanylate cyclase, GGDEF domain JM952_03125 PF02082 Transcriptional regulator JM952_03135 PF07992 Pyridine nucleotide-disulphide oxidoreductase JM952_03135 PF13192 Thioredoxin domain JM952_03165 PF00892 EamA-like transporter family JM952_03170 PF00497 Bacterial extracellular solute-binding proteins, family 3 JM952_03180 PF03330 Lytic transglycolase JM952_03185 PF00553 Cellulose binding domain JM952_03185 PF00041 Fibronectin type III domain JM952_03185 PF01341 Glycosyl hydrolases family 6 JM952_03195 PF00324 Amino acid permease JM952_03200 PF01544 CorA-like Mg2+ transporter protein JM952_03215 PF01204 Trehalase JM952_03225 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JM952_03225 PF06827 Zinc finger found in FPG and IleRS JM952_03225 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JM952_03250 PF05231 MASE1 JM952_03250 PF08448 PAS fold JM952_03250 PF13426 PAS domain JM952_03250 PF08447 PAS fold JM952_03250 PF00990 Diguanylate cyclase, GGDEF domain JM952_03250 PF00563 EAL domain JM952_03260 PF00553 Cellulose binding domain JM952_03260 PF00150 Cellulase (glycosyl hydrolase family 5) JM952_03265 PF01740 STAS domain JM952_03265 PF00916 Sulfate permease family JM952_03270 PF00990 Diguanylate cyclase, GGDEF domain JM952_03275 PF00593 TonB dependent receptor JM952_03275 PF07660 Secretin and TonB N terminus short domain JM952_03275 PF07715 TonB-dependent Receptor Plug Domain JM952_03285 PF03600 Citrate transporter JM952_03285 PF02080 TrkA-C domain JM952_03290 PF13632 Glycosyl transferase family group 2 JM952_03300 PF07694 5TMR of 5TMR-LYT JM952_03300 PF06580 Histidine kinase JM952_03305 PF00072 Response regulator receiver domain JM952_03305 PF04397 LytTr DNA-binding domain JM952_03310 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JM952_03310 PF03900 Porphobilinogen deaminase, C-terminal domain JM952_03340 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JM952_03340 PF00326 Prolyl oligopeptidase family JM952_03355 PF00155 Aminotransferase class I and II JM952_03360 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JM952_03360 PF00326 Prolyl oligopeptidase family JM952_03365 PF04304 Protein of unknown function (DUF454) JM952_03375 PF01678 Diaminopimelate epimerase JM952_03385 PF02899 Phage integrase, N-terminal SAM-like domain JM952_03385 PF00589 Phage integrase family JM952_03390 PF00227 Proteasome subunit JM952_03395 PF00004 ATPase family associated with various cellular activities (AAA) JM952_03395 PF07724 AAA domain (Cdc48 subfamily) JM952_03395 PF10431 C-terminal, D2-small domain, of ClpB protein JM952_03410 PF13673 Acetyltransferase (GNAT) domain JM952_03415 PF13533 Biotin-lipoyl like JM952_03425 PF01209 ubiE/COQ5 methyltransferase family JM952_03430 PF00990 Diguanylate cyclase, GGDEF domain JM952_03430 PF03707 Bacterial signalling protein N terminal repeat JM952_03430 PF00563 EAL domain JM952_03435 PF11838 ERAP1-like C-terminal domain JM952_03435 PF01433 Peptidase family M1 domain JM952_03450 PF13360 PQQ-like domain JM952_03455 PF00497 Bacterial extracellular solute-binding proteins, family 3 JM952_03470 PF08240 Alcohol dehydrogenase GroES-like domain JM952_03470 PF00107 Zinc-binding dehydrogenase JM952_03475 PF07715 TonB-dependent Receptor Plug Domain JM952_03475 PF07660 Secretin and TonB N terminus short domain JM952_03475 PF00593 TonB dependent receptor JM952_03485 PF01590 GAF domain JM952_03485 PF02954 Bacterial regulatory protein, Fis family JM952_03485 PF00158 Sigma-54 interaction domain JM952_03490 PF00294 pfkB family carbohydrate kinase JM952_03505 PF04085 rod shape-determining protein MreC JM952_03515 PF03717 Penicillin-binding Protein dimerisation domain JM952_03515 PF00905 Penicillin binding protein transpeptidase domain JM952_03520 PF01098 Cell cycle protein JM952_03565 PF00295 Glycosyl hydrolases family 28 JM952_03570 PF13406 Transglycosylase SLT domain JM952_03575 PF05036 Sporulation related domain JM952_03575 PF03330 Lytic transglycolase JM952_03580 PF07943 Penicillin-binding protein 5, C-terminal domain JM952_03580 PF00768 D-alanyl-D-alanine carboxypeptidase JM952_03590 PF04359 Protein of unknown function (DUF493) JM952_03595 PF03099 Biotin/lipoate A/B protein ligase family JM952_03600 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JM952_03600 PF04055 Radical SAM superfamily JM952_03605 PF11818 C-terminal domain of tail specific protease (DUF3340) JM952_03605 PF00595 PDZ domain JM952_03605 PF03572 Peptidase family S41 JM952_03605 PF17804 Tail specific protease N-terminal domain JM952_03615 PF03466 LysR substrate binding domain JM952_03615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_03625 PF01467 Cytidylyltransferase-like JM952_03625 PF00293 NUDIX domain JM952_03660 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JM952_03660 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JM952_03665 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JM952_03665 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JM952_03670 PF04972 BON domain JM952_03675 PF00360 Phytochrome region JM952_03675 PF08446 PAS fold JM952_03675 PF01590 GAF domain JM952_03675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_03675 PF00512 His Kinase A (phospho-acceptor) domain JM952_03680 PF00072 Response regulator receiver domain JM952_03685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_03685 PF00512 His Kinase A (phospho-acceptor) domain JM952_03690 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JM952_03730 PF03958 Bacterial type II/III secretion system short domain JM952_03730 PF00263 Bacterial type II and III secretion system protein JM952_03735 PF00437 Type II/IV secretion system protein JM952_03740 PF00482 Type II secretion system (T2SS), protein F JM952_03745 PF07963 Prokaryotic N-terminal methylation motif JM952_03745 PF08334 Type II secretion system (T2SS), protein G JM952_03755 PF02501 Type II secretion system (T2SS), protein I JM952_03755 PF07963 Prokaryotic N-terminal methylation motif JM952_03760 PF07963 Prokaryotic N-terminal methylation motif JM952_03760 PF11612 Type II secretion system (T2SS), protein J JM952_03765 PF03934 Type II secretion system (T2SS), protein K JM952_03785 PF00392 Bacterial regulatory proteins, gntR family JM952_03785 PF07702 UTRA domain JM952_03790 PF07690 Major Facilitator Superfamily JM952_03795 PF00356 Bacterial regulatory proteins, lacI family JM952_03800 PF01380 SIS domain JM952_03805 PF01979 Amidohydrolase family JM952_03820 PF12627 Probable RNA and SrmB- binding site of polymerase A JM952_03820 PF01966 HD domain JM952_03820 PF01743 Poly A polymerase head domain JM952_03825 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain JM952_03825 PF01464 Transglycosylase SLT domain JM952_03830 PF07715 TonB-dependent Receptor Plug Domain JM952_03830 PF00593 TonB dependent receptor JM952_03835 PF05199 GMC oxidoreductase JM952_03835 PF00732 GMC oxidoreductase JM952_03840 PF00171 Aldehyde dehydrogenase family JM952_03845 PF02028 BCCT, betaine/carnitine/choline family transporter JM952_03855 PF01323 DSBA-like thioredoxin domain JM952_03865 PF00034 Cytochrome c JM952_03870 PF01926 50S ribosome-binding GTPase JM952_03875 PF04107 Glutamate-cysteine ligase family 2(GCS2) JM952_03880 PF00672 HAMP domain JM952_03880 PF00512 His Kinase A (phospho-acceptor) domain JM952_03880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_03885 PF00486 Transcriptional regulatory protein, C terminal JM952_03885 PF00072 Response regulator receiver domain JM952_03900 PF03466 LysR substrate binding domain JM952_03900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_03905 PF02583 Metal-sensitive transcriptional repressor JM952_03910 PF00107 Zinc-binding dehydrogenase JM952_03910 PF08240 Alcohol dehydrogenase GroES-like domain JM952_03915 PF04828 Glutathione-dependent formaldehyde-activating enzyme JM952_03920 PF00756 Putative esterase JM952_03935 PF00392 Bacterial regulatory proteins, gntR family JM952_03935 PF00155 Aminotransferase class I and II JM952_03940 PF02567 Phenazine biosynthesis-like protein JM952_03945 PF00892 EamA-like transporter family JM952_03955 PF02645 Uncharacterised protein, DegV family COG1307 JM952_03995 PF01979 Amidohydrolase family JM952_04000 PF01979 Amidohydrolase family JM952_04015 PF00462 Glutaredoxin JM952_04020 PF01522 Polysaccharide deacetylase JM952_04035 PF00155 Aminotransferase class I and II JM952_04045 PF03193 RsgA GTPase JM952_04060 PF00128 Alpha amylase, catalytic domain JM952_04075 PF00356 Bacterial regulatory proteins, lacI family JM952_04080 PF00106 short chain dehydrogenase JM952_04085 PF03600 Citrate transporter JM952_04095 PF00072 Response regulator receiver domain JM952_04095 PF00486 Transcriptional regulatory protein, C terminal JM952_04100 PF08521 Two-component sensor kinase N-terminal JM952_04100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_04100 PF00512 His Kinase A (phospho-acceptor) domain JM952_04110 PF00196 Bacterial regulatory proteins, luxR family JM952_04110 PF00072 Response regulator receiver domain JM952_04120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_04120 PF00512 His Kinase A (phospho-acceptor) domain JM952_04130 PF00375 Sodium:dicarboxylate symporter family JM952_04135 PF00390 Malic enzyme, N-terminal domain JM952_04135 PF03949 Malic enzyme, NAD binding domain JM952_04135 PF01515 Phosphate acetyl/butaryl transferase JM952_04160 PF03279 Bacterial lipid A biosynthesis acyltransferase JM952_04165 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JM952_04170 PF02321 Outer membrane efflux protein JM952_04185 PF03707 Bacterial signalling protein N terminal repeat JM952_04185 PF13188 PAS domain JM952_04185 PF00990 Diguanylate cyclase, GGDEF domain JM952_04185 PF00563 EAL domain JM952_04190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_04195 PF00330 Aconitase family (aconitate hydratase) JM952_04200 PF00694 Aconitase C-terminal domain JM952_04205 PF08241 Methyltransferase domain JM952_04210 PF00180 Isocitrate/isopropylmalate dehydrogenase JM952_04215 PF00682 HMGL-like JM952_04215 PF08502 LeuA allosteric (dimerisation) domain JM952_04220 PF00291 Pyridoxal-phosphate dependent enzyme JM952_04230 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JM952_04230 PF00205 Thiamine pyrophosphate enzyme, central domain JM952_04230 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JM952_04235 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JM952_04235 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JM952_04245 PF00672 HAMP domain JM952_04245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_04245 PF02203 Tar ligand binding domain homologue JM952_04250 PF07676 WD40-like Beta Propeller Repeat JM952_04250 PF00326 Prolyl oligopeptidase family JM952_04255 PF13667 ThiC-associated domain JM952_04255 PF01964 Radical SAM ThiC family JM952_04260 PF18500 CadC C-terminal domain 1 JM952_04260 PF00486 Transcriptional regulatory protein, C terminal JM952_04265 PF12833 Helix-turn-helix domain JM952_04270 PF00593 TonB dependent receptor JM952_04270 PF07715 TonB-dependent Receptor Plug Domain JM952_04285 PF00719 Inorganic pyrophosphatase JM952_04295 PF03030 Inorganic H+ pyrophosphatase JM952_04315 PF00365 Phosphofructokinase JM952_04325 PF08245 Mur ligase middle domain JM952_04325 PF02875 Mur ligase family, glutamate ligase domain JM952_04325 PF01225 Mur ligase family, catalytic domain JM952_04335 PF01062 Bestrophin, RFP-TM, chloride channel JM952_04340 PF01569 PAP2 superfamily JM952_04360 PF00027 Cyclic nucleotide-binding domain JM952_04360 PF00520 Ion transport protein JM952_04365 PF00202 Aminotransferase class-III JM952_04380 PF01593 Flavin containing amine oxidoreductase JM952_04385 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JM952_04385 PF00034 Cytochrome c JM952_04395 PF00155 Aminotransferase class I and II JM952_04400 PF00127 Copper binding proteins, plastocyanin/azurin family JM952_04405 PF00196 Bacterial regulatory proteins, luxR family JM952_04405 PF17874 MalT-like TPR region JM952_04410 PF00202 Aminotransferase class-III JM952_04420 PF02581 Thiamine monophosphate synthase JM952_04425 PF00301 Rubredoxin JM952_04430 PF13369 Transglutaminase-like superfamily JM952_04440 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JM952_04450 PF01812 5-formyltetrahydrofolate cyclo-ligase family JM952_04460 PF05164 Cell division protein ZapA JM952_04470 PF03695 Uncharacterised protein family (UPF0149) JM952_04475 PF05195 Aminopeptidase P, N-terminal domain JM952_04475 PF00557 Metallopeptidase family M24 JM952_04485 PF00557 Metallopeptidase family M24 JM952_04500 PF06969 HemN C-terminal domain JM952_04500 PF04055 Radical SAM superfamily JM952_04505 PF01725 Ham1 family JM952_04510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JM952_04515 PF03725 3' exoribonuclease family, domain 2 JM952_04515 PF01138 3' exoribonuclease family, domain 1 JM952_04520 PF03755 YicC-like family, N-terminal region JM952_04520 PF08340 Domain of unknown function (DUF1732) JM952_04525 PF00625 Guanylate kinase JM952_04530 PF01192 RNA polymerase Rpb6 JM952_04535 PF04607 Region found in RelA / SpoT proteins JM952_04535 PF02824 TGS domain JM952_04535 PF13291 ACT domain JM952_04545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_04545 PF03466 LysR substrate binding domain JM952_04550 PF00701 Dihydrodipicolinate synthetase family JM952_04555 PF00171 Aldehyde dehydrogenase family JM952_04560 PF07690 Major Facilitator Superfamily JM952_04565 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JM952_04565 PF13378 Enolase C-terminal domain-like JM952_04570 PF03573 outer membrane porin, OprD family JM952_04575 PF08666 SAF domain JM952_04575 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus JM952_04580 PF01042 Endoribonuclease L-PSP JM952_04585 PF00271 Helicase conserved C-terminal domain JM952_04585 PF00270 DEAD/DEAH box helicase JM952_04585 PF17191 RecG wedge domain JM952_04590 PF01156 Inosine-uridine preferring nucleoside hydrolase JM952_04595 PF01197 Ribosomal protein L31 JM952_04600 PF00285 Citrate synthase, C-terminal domain JM952_04610 PF17092 Penicillin-binding protein OB-like domain JM952_04610 PF00912 Transglycosylase JM952_04610 PF00905 Penicillin binding protein transpeptidase domain JM952_04615 PF11104 Type IV pilus assembly protein PilM; JM952_04620 PF05137 Fimbrial assembly protein (PilN) JM952_04625 PF04350 Pilus assembly protein, PilO JM952_04630 PF04351 Pilus assembly protein, PilP JM952_04635 PF07660 Secretin and TonB N terminus short domain JM952_04635 PF11741 AMIN domain JM952_04635 PF00263 Bacterial type II and III secretion system protein JM952_04635 PF03958 Bacterial type II/III secretion system short domain JM952_04640 PF07726 ATPase family associated with various cellular activities (AAA) JM952_04640 PF17863 AAA lid domain JM952_04660 PF07584 Aerotolerance regulator N-terminal JM952_04660 PF00092 von Willebrand factor type A domain JM952_04670 PF00375 Sodium:dicarboxylate symporter family JM952_04675 PF00456 Transketolase, thiamine diphosphate binding domain JM952_04675 PF02780 Transketolase, C-terminal domain JM952_04675 PF02779 Transketolase, pyrimidine binding domain JM952_04680 PF12146 Serine aminopeptidase, S33 JM952_04690 PF01551 Peptidase family M23 JM952_04690 PF04225 Opacity-associated protein A LysM-like domain JM952_04695 PF01476 LysM domain JM952_04695 PF03734 L,D-transpeptidase catalytic domain JM952_04720 PF03459 TOBE domain JM952_04720 PF00005 ABC transporter JM952_04725 PF00528 Binding-protein-dependent transport system inner membrane component JM952_04735 PF00753 Metallo-beta-lactamase superfamily JM952_04735 PF04273 Putative phosphatase (DUF442) JM952_04750 PF03922 OmpW family JM952_04765 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JM952_04765 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JM952_04785 PF00162 Phosphoglycerate kinase JM952_04790 PF13419 Haloacid dehalogenase-like hydrolase JM952_04795 PF00224 Pyruvate kinase, barrel domain JM952_04795 PF02887 Pyruvate kinase, alpha/beta domain JM952_04800 PF00274 Fructose-bisphosphate aldolase class-I JM952_04805 PF01661 Macro domain JM952_04815 PF00291 Pyridoxal-phosphate dependent enzyme JM952_04820 PF10414 Sirohaem synthase dimerisation region JM952_04820 PF14824 Sirohaem biosynthesis protein central JM952_04820 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JM952_04825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_04825 PF03466 LysR substrate binding domain JM952_04835 PF00672 HAMP domain JM952_04835 PF00072 Response regulator receiver domain JM952_04835 PF01627 Hpt domain JM952_04835 PF00512 His Kinase A (phospho-acceptor) domain JM952_04835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_04855 PF01507 Phosphoadenosine phosphosulfate reductase family JM952_04860 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JM952_04860 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JM952_04865 PF00667 FAD binding domain JM952_04865 PF00175 Oxidoreductase NAD-binding domain JM952_04865 PF00258 Flavodoxin JM952_04870 PF01507 Phosphoadenosine phosphosulfate reductase family JM952_04875 PF00009 Elongation factor Tu GTP binding domain JM952_04880 PF00529 HlyD membrane-fusion protein of T1SS JM952_04880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JM952_04885 PF00873 AcrB/AcrD/AcrF family JM952_04890 PF11838 ERAP1-like C-terminal domain JM952_04890 PF01433 Peptidase family M1 domain JM952_04900 PF01235 Sodium:alanine symporter family JM952_04905 PF08032 RNA 2'-O ribose methyltransferase substrate binding JM952_04905 PF00588 SpoU rRNA Methylase family JM952_04910 PF00135 Carboxylesterase family JM952_04915 PF10566 Glycoside hydrolase 97 JM952_04915 PF14508 Glycosyl-hydrolase 97 N-terminal JM952_04915 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation JM952_04920 PF16353 Domain of unknown function(DUF4981) JM952_04920 PF00703 Glycosyl hydrolases family 2 JM952_04920 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JM952_04920 PF02837 Glycosyl hydrolases family 2, sugar binding domain JM952_04920 PF02929 Beta galactosidase small chain JM952_04930 PF01341 Glycosyl hydrolases family 6 JM952_04930 PF00041 Fibronectin type III domain JM952_04930 PF00553 Cellulose binding domain JM952_04935 PF00356 Bacterial regulatory proteins, lacI family JM952_04950 PF01741 Large-conductance mechanosensitive channel, MscL JM952_04955 PF01557 Fumarylacetoacetate (FAA) hydrolase family JM952_04970 PF03600 Citrate transporter JM952_04970 PF02080 TrkA-C domain JM952_04975 PF02390 Putative methyltransferase JM952_04980 PF05690 Thiazole biosynthesis protein ThiG JM952_04990 PF00657 GDSL-like Lipase/Acylhydrolase JM952_04990 PF03797 Autotransporter beta-domain JM952_05100 PF04002 RadC-like JAB domain JM952_05205 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JM952_05205 PF00128 Alpha amylase, catalytic domain JM952_05210 PF18030 RimK PreATP-grasp domain JM952_05210 PF08443 RimK-like ATP-grasp domain JM952_05220 PF00072 Response regulator receiver domain JM952_05220 PF00486 Transcriptional regulatory protein, C terminal JM952_05225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_05225 PF00512 His Kinase A (phospho-acceptor) domain JM952_05225 PF00989 PAS fold JM952_05225 PF11808 Phosphate regulon sensor protein PhoR JM952_05245 PF01121 Dephospho-CoA kinase JM952_05250 PF06750 Bacterial Peptidase A24 N-terminal domain JM952_05250 PF01478 Type IV leader peptidase family JM952_05255 PF00482 Type II secretion system (T2SS), protein F JM952_05260 PF00114 Pilin (bacterial filament) JM952_05260 PF07963 Prokaryotic N-terminal methylation motif JM952_05265 PF07963 Prokaryotic N-terminal methylation motif JM952_05265 PF00114 Pilin (bacterial filament) JM952_05270 PF00437 Type II/IV secretion system protein JM952_05270 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JM952_05280 PF00158 Sigma-54 interaction domain JM952_05280 PF00072 Response regulator receiver domain JM952_05280 PF02954 Bacterial regulatory protein, Fis family JM952_05285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_05285 PF00512 His Kinase A (phospho-acceptor) domain JM952_05290 PF08442 ATP-grasp domain JM952_05290 PF00549 CoA-ligase JM952_05295 PF02629 CoA binding domain JM952_05295 PF00549 CoA-ligase JM952_05310 PF00795 Carbon-nitrogen hydrolase JM952_05310 PF02540 NAD synthase JM952_05320 PF13525 Outer membrane lipoprotein JM952_05325 PF00849 RNA pseudouridylate synthase JM952_05330 PF02578 Multi-copper polyphenol oxidoreductase laccase JM952_05345 PF00672 HAMP domain JM952_05345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_05345 PF02203 Tar ligand binding domain homologue JM952_05350 PF01011 PQQ enzyme repeat JM952_05360 PF00982 Glycosyltransferase family 20 JM952_05365 PF00723 Glycosyl hydrolases family 15 JM952_05370 PF02358 Trehalose-phosphatase JM952_05375 PF07715 TonB-dependent Receptor Plug Domain JM952_05375 PF00593 TonB dependent receptor JM952_05410 PF01541 GIY-YIG catalytic domain JM952_05415 PF00005 ABC transporter JM952_05420 PF00004 ATPase family associated with various cellular activities (AAA) JM952_05420 PF07724 AAA domain (Cdc48 subfamily) JM952_05420 PF17871 AAA lid domain JM952_05420 PF02861 Clp amino terminal domain, pathogenicity island component JM952_05420 PF10431 C-terminal, D2-small domain, of ClpB protein JM952_05430 PF01053 Cys/Met metabolism PLP-dependent enzyme JM952_05435 PF07715 TonB-dependent Receptor Plug Domain JM952_05435 PF00593 TonB dependent receptor JM952_05450 PF12557 Cob(I)alamin adenosyltransferase N terminal JM952_05450 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP JM952_05455 PF07685 CobB/CobQ-like glutamine amidotransferase domain JM952_05455 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JM952_05460 PF17113 Regulatory signalling modulator protein AmpE JM952_05460 PF03186 CobD/Cbib protein JM952_05465 PF00155 Aminotransferase class I and II JM952_05470 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JM952_05470 PF07685 CobB/CobQ-like glutamine amidotransferase domain JM952_05475 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase JM952_05480 PF02277 Phosphoribosyltransferase JM952_05490 PF02654 Cobalamin-5-phosphate synthase JM952_05510 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JM952_05510 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JM952_05515 PF06276 Ferric iron reductase FhuF-like transporter JM952_05515 PF04183 IucA / IucC family JM952_05520 PF07690 Major Facilitator Superfamily JM952_05525 PF04183 IucA / IucC family JM952_05525 PF06276 Ferric iron reductase FhuF-like transporter JM952_05535 PF07660 Secretin and TonB N terminus short domain JM952_05535 PF07715 TonB-dependent Receptor Plug Domain JM952_05535 PF00593 TonB dependent receptor JM952_05545 PF02254 TrkA-N domain JM952_05545 PF00999 Sodium/hydrogen exchanger family JM952_05550 PF00067 Cytochrome P450 JM952_05555 PF07715 TonB-dependent Receptor Plug Domain JM952_05555 PF00593 TonB dependent receptor JM952_05560 PF00593 TonB dependent receptor JM952_05560 PF07715 TonB-dependent Receptor Plug Domain JM952_05570 PF00593 TonB dependent receptor JM952_05570 PF07715 TonB-dependent Receptor Plug Domain JM952_05575 PF12848 ABC transporter JM952_05575 PF00005 ABC transporter JM952_05585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_05585 PF03466 LysR substrate binding domain JM952_05595 PF07859 alpha/beta hydrolase fold JM952_05595 PF13472 GDSL-like Lipase/Acylhydrolase family JM952_05600 PF05506 Domain of unknown function (DUF756) JM952_05600 PF04185 Phosphoesterase family JM952_05610 PF00982 Glycosyltransferase family 20 JM952_05610 PF05116 Sucrose-6F-phosphate phosphohydrolase JM952_05615 PF07690 Major Facilitator Superfamily JM952_05640 PF01336 OB-fold nucleic acid binding domain JM952_05640 PF00152 tRNA synthetases class II (D, K and N) JM952_05640 PF02938 GAD domain JM952_05655 PF01709 Transcriptional regulator JM952_05660 PF02075 Crossover junction endodeoxyribonuclease RuvC JM952_05665 PF07499 RuvA, C-terminal domain JM952_05665 PF01330 RuvA N terminal domain JM952_05670 PF02705 K+ potassium transporter JM952_05680 PF17864 RuvB AAA lid domain JM952_05680 PF05491 RuvB C-terminal winged helix domain JM952_05680 PF05496 Holliday junction DNA helicase RuvB P-loop domain JM952_05685 PF03061 Thioesterase superfamily JM952_05690 PF01618 MotA/TolQ/ExbB proton channel family JM952_05695 PF02472 Biopolymer transport protein ExbD/TolR JM952_05705 PF04052 TolB amino-terminal domain JM952_05705 PF07676 WD40-like Beta Propeller Repeat JM952_05710 PF00691 OmpA family JM952_05720 PF04055 Radical SAM superfamily JM952_05725 PF06508 Queuosine biosynthesis protein QueC JM952_05760 PF00654 Voltage gated chloride channel JM952_05765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_05765 PF03466 LysR substrate binding domain JM952_05770 PF01810 LysE type translocator JM952_05790 PF01479 S4 domain JM952_05790 PF00849 RNA pseudouridylate synthase JM952_05805 PF00270 DEAD/DEAH box helicase JM952_05805 PF00271 Helicase conserved C-terminal domain JM952_05805 PF00570 HRDC domain JM952_05805 PF16124 RecQ zinc-binding JM952_05805 PF09382 RQC domain JM952_05810 PF00210 Ferritin-like domain JM952_05815 PF00271 Helicase conserved C-terminal domain JM952_05815 PF00270 DEAD/DEAH box helicase JM952_05815 PF11898 Domain of unknown function (DUF3418) JM952_05815 PF04408 Helicase associated domain (HA2) JM952_05815 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JM952_05825 PF02685 Glucokinase JM952_05840 PF13186 Iron-sulfur cluster-binding domain JM952_05840 PF04055 Radical SAM superfamily JM952_05845 PF05402 Coenzyme PQQ synthesis protein D (PqqD) JM952_05850 PF03070 TENA/THI-4/PQQC family JM952_05855 PF12706 Beta-lactamase superfamily domain JM952_05860 PF08042 PqqA family JM952_05865 PF02824 TGS domain JM952_05865 PF13291 ACT domain JM952_05865 PF04607 Region found in RelA / SpoT proteins JM952_05875 PF00535 Glycosyl transferase family 2 JM952_05880 PF00912 Transglycosylase JM952_05880 PF00905 Penicillin binding protein transpeptidase domain JM952_05880 PF14814 Bifunctional transglycosylase second domain JM952_05890 PF13307 Helicase C-terminal domain JM952_05890 PF04851 Type III restriction enzyme, res subunit JM952_05905 PF00814 Glycoprotease family JM952_05910 PF03747 ADP-ribosylglycohydrolase JM952_05920 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JM952_05920 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JM952_05925 PF00072 Response regulator receiver domain JM952_05930 PF00072 Response regulator receiver domain JM952_05935 PF01584 CheW-like domain JM952_05940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_05940 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term JM952_05945 PF01584 CheW-like domain JM952_05945 PF02895 Signal transducing histidine kinase, homodimeric domain JM952_05945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_05945 PF01627 Hpt domain JM952_05945 PF00072 Response regulator receiver domain JM952_05970 PF08281 Sigma-70, region 4 JM952_05970 PF04542 Sigma-70 region 2 JM952_05975 PF00092 von Willebrand factor type A domain JM952_05975 PF12450 von Willebrand factor JM952_05975 PF12034 Domain of unknown function (DUF3520) JM952_05980 PF01112 Asparaginase JM952_05985 PF03932 CutC family JM952_05990 PF00067 Cytochrome P450 JM952_06025 PF18766 SWI2/SNF2 ATPase JM952_06025 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JM952_06025 PF11867 Domain of unknown function (DUF3387) JM952_06040 PF12161 HsdM N-terminal domain JM952_06040 PF02384 N-6 DNA Methylase JM952_06070 PF01301 Glycosyl hydrolases family 35 JM952_06075 PF17678 Glycosyl hydrolase family 92 N-terminal domain JM952_06075 PF07971 Glycosyl hydrolase family 92 JM952_06085 PF14310 Fibronectin type III-like domain JM952_06085 PF00933 Glycosyl hydrolase family 3 N terminal domain JM952_06085 PF01915 Glycosyl hydrolase family 3 C-terminal domain JM952_06085 PF07691 PA14 domain JM952_06095 PF00728 Glycosyl hydrolase family 20, catalytic domain JM952_06095 PF02838 Glycosyl hydrolase family 20, domain 2 JM952_06095 PF07691 PA14 domain JM952_06100 PF00704 Glycosyl hydrolases family 18 JM952_06100 PF01476 LysM domain JM952_06120 PF02685 Glucokinase JM952_06125 PF04452 RNA methyltransferase JM952_06130 PF00202 Aminotransferase class-III JM952_06135 PF00293 NUDIX domain JM952_06140 PF00459 Inositol monophosphatase family JM952_06145 PF03819 MazG nucleotide pyrophosphohydrolase domain JM952_06150 PF02694 Uncharacterised BCR, YnfA/UPF0060 family JM952_06160 PF01145 SPFH domain / Band 7 family JM952_06160 PF16200 C-terminal region of band_7 JM952_06170 PF01571 Aminomethyltransferase folate-binding domain JM952_06170 PF08669 Glycine cleavage T-protein C-terminal barrel domain JM952_06175 PF01597 Glycine cleavage H-protein JM952_06205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JM952_06205 PF02770 Acyl-CoA dehydrogenase, middle domain JM952_06205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JM952_06205 PF09317 Domain of unknown function (DUF1974) JM952_06215 PF00440 Bacterial regulatory proteins, tetR family JM952_06220 PF07715 TonB-dependent Receptor Plug Domain JM952_06220 PF00593 TonB dependent receptor JM952_06230 PF01430 Hsp33 protein JM952_06235 PF00912 Transglycosylase JM952_06240 PF00535 Glycosyl transferase family 2 JM952_06245 PF00571 CBS domain JM952_06245 PF00478 IMP dehydrogenase / GMP reductase domain JM952_06250 PF05170 AsmA family JM952_06255 PF03006 Haemolysin-III related JM952_06260 PF16658 Class II release factor RF3, C-terminal domain JM952_06260 PF00009 Elongation factor Tu GTP binding domain JM952_06265 PF01551 Peptidase family M23 JM952_06265 PF08460 Bacterial SH3 domain JM952_06270 PF00561 alpha/beta hydrolase fold JM952_06275 PF01053 Cys/Met metabolism PLP-dependent enzyme JM952_06280 PF00696 Amino acid kinase family JM952_06280 PF00742 Homoserine dehydrogenase JM952_06280 PF03447 Homoserine dehydrogenase, NAD binding domain JM952_06285 PF12697 Alpha/beta hydrolase family JM952_06295 PF03313 Serine dehydratase alpha chain JM952_06295 PF03315 Serine dehydratase beta chain JM952_06315 PF04264 YceI-like domain JM952_06320 PF01627 Hpt domain JM952_06320 PF00072 Response regulator receiver domain JM952_06320 PF00512 His Kinase A (phospho-acceptor) domain JM952_06320 PF00672 HAMP domain JM952_06320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_06320 PF17149 Periplasmic sensor domain found in signal transduction proteins JM952_06325 PF01627 Hpt domain JM952_06325 PF00072 Response regulator receiver domain JM952_06325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_06325 PF17149 Periplasmic sensor domain found in signal transduction proteins JM952_06325 PF00512 His Kinase A (phospho-acceptor) domain JM952_06325 PF00672 HAMP domain JM952_06330 PF00672 HAMP domain JM952_06330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_06330 PF00512 His Kinase A (phospho-acceptor) domain JM952_06330 PF01627 Hpt domain JM952_06330 PF00072 Response regulator receiver domain JM952_06330 PF17149 Periplasmic sensor domain found in signal transduction proteins JM952_06335 PF07690 Major Facilitator Superfamily JM952_06345 PF01208 Uroporphyrinogen decarboxylase (URO-D) JM952_06355 PF01761 3-dehydroquinate synthase JM952_06360 PF01202 Shikimate kinase JM952_06365 PF01243 Pyridoxamine 5'-phosphate oxidase JM952_06365 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JM952_06375 PF04012 PspA/IM30 family JM952_06400 PF03738 Glutathionylspermidine synthase preATP-grasp JM952_06410 PF07690 Major Facilitator Superfamily JM952_06415 PF00376 MerR family regulatory protein JM952_06415 PF09278 MerR, DNA binding JM952_06445 PF04820 Tryptophan halogenase JM952_06465 PF01339 CheB methylesterase JM952_06465 PF00072 Response regulator receiver domain JM952_06475 PF00324 Amino acid permease JM952_06480 PF00196 Bacterial regulatory proteins, luxR family JM952_06485 PF00561 alpha/beta hydrolase fold JM952_06500 PF00544 Pectate lyase JM952_06505 PF00324 Amino acid permease JM952_06510 PF01654 Cytochrome bd terminal oxidase subunit I JM952_06515 PF02322 Cytochrome bd terminal oxidase subunit II JM952_06525 PF00571 CBS domain JM952_06525 PF01769 Divalent cation transporter JM952_06525 PF03448 MgtE intracellular N domain JM952_06530 PF02896 PEP-utilising enzyme, TIM barrel domain JM952_06530 PF05524 PEP-utilising enzyme, N-terminal JM952_06530 PF00391 PEP-utilising enzyme, mobile domain JM952_06535 PF00381 PTS HPr component phosphorylation site JM952_06545 PF03668 P-loop ATPase protein family JM952_06550 PF07475 HPr Serine kinase C-terminal domain JM952_06550 PF02603 HPr Serine kinase N terminus JM952_06555 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JM952_06560 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JM952_06565 PF00309 Sigma-54 factor, Activator interacting domain (AID) JM952_06565 PF04552 Sigma-54, DNA binding domain JM952_06565 PF04963 Sigma-54 factor, core binding domain JM952_06570 PF00005 ABC transporter JM952_06590 PF00571 CBS domain JM952_06590 PF01380 SIS domain JM952_06595 PF01722 BolA-like protein JM952_06600 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JM952_06620 PF00551 Formyl transferase JM952_06630 PF00586 AIR synthase related protein, N-terminal domain JM952_06630 PF02769 AIR synthase related protein, C-terminal domain JM952_06640 PF01594 AI-2E family transporter JM952_06645 PF00308 Bacterial dnaA protein JM952_06650 PF00483 Nucleotidyl transferase JM952_06655 PF01636 Phosphotransferase enzyme family JM952_06665 PF01546 Peptidase family M20/M25/M40 JM952_06665 PF07687 Peptidase dimerisation domain JM952_06680 PF00258 Flavodoxin JM952_06680 PF00667 FAD binding domain JM952_06680 PF00175 Oxidoreductase NAD-binding domain JM952_06685 PF02424 ApbE family JM952_06710 PF18331 PKHD-type hydroxylase C-terminal domain JM952_06710 PF13640 2OG-Fe(II) oxygenase superfamily JM952_06715 PF07715 TonB-dependent Receptor Plug Domain JM952_06715 PF00593 TonB dependent receptor JM952_06720 PF00355 Rieske [2Fe-2S] domain JM952_06730 PF00266 Aminotransferase class-V JM952_06735 PF01458 Uncharacterized protein family (UPF0051) JM952_06740 PF00005 ABC transporter JM952_06745 PF01458 Uncharacterized protein family (UPF0051) JM952_06760 PF01965 DJ-1/PfpI family JM952_06790 PF03807 NADP oxidoreductase coenzyme F420-dependent JM952_06790 PF14748 Pyrroline-5-carboxylate reductase dimerisation JM952_06795 PF01168 Alanine racemase, N-terminal domain JM952_06800 PF00437 Type II/IV secretion system protein JM952_06805 PF00437 Type II/IV secretion system protein JM952_06825 PF03352 Methyladenine glycosylase JM952_06825 PF13302 Acetyltransferase (GNAT) domain JM952_06825 PF13673 Acetyltransferase (GNAT) domain JM952_06825 PF00958 GMP synthase C terminal domain JM952_06825 PF00117 Glutamine amidotransferase class-I JM952_06830 PF13687 Domain of unknown function (DUF4153) JM952_06835 PF02622 Uncharacterized ACR, COG1678 JM952_06840 PF03652 Holliday junction resolvase JM952_06845 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JM952_06845 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JM952_06850 PF02566 OsmC-like protein JM952_06860 PF02567 Phenazine biosynthesis-like protein JM952_06865 PF02567 Phenazine biosynthesis-like protein JM952_06870 PF01842 ACT domain JM952_06870 PF00696 Amino acid kinase family JM952_06885 PF08245 Mur ligase middle domain JM952_06895 PF00348 Polyprenyl synthetase JM952_06900 PF00436 Single-strand binding protein family JM952_06910 PF06629 MltA-interacting protein MipA JM952_06920 PF00486 Transcriptional regulatory protein, C terminal JM952_06920 PF00072 Response regulator receiver domain JM952_06925 PF08446 PAS fold JM952_06925 PF00512 His Kinase A (phospho-acceptor) domain JM952_06925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_06925 PF00360 Phytochrome region JM952_06925 PF01590 GAF domain JM952_06930 PF00563 EAL domain JM952_06930 PF01590 GAF domain JM952_06930 PF00990 Diguanylate cyclase, GGDEF domain JM952_06930 PF00360 Phytochrome region JM952_06935 PF08240 Alcohol dehydrogenase GroES-like domain JM952_06935 PF00107 Zinc-binding dehydrogenase JM952_06940 PF00111 2Fe-2S iron-sulfur cluster binding domain JM952_06940 PF01799 [2Fe-2S] binding domain JM952_06940 PF10518 TAT (twin-arginine translocation) pathway signal sequence JM952_06945 PF00941 FAD binding domain in molybdopterin dehydrogenase JM952_06945 PF03450 CO dehydrogenase flavoprotein C-terminal domain JM952_06950 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JM952_06950 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JM952_06955 PF13478 XdhC Rossmann domain JM952_06955 PF02625 XdhC and CoxI family JM952_06960 PF12804 MobA-like NTP transferase domain JM952_06990 PF04328 Selenoprotein, putative JM952_06995 PF13722 5TM C-terminal transporter carbon starvation CstA JM952_06995 PF02554 Carbon starvation protein CstA JM952_07000 PF05726 Pirin C-terminal cupin domain JM952_07000 PF02678 Pirin JM952_07020 PF02678 Pirin JM952_07020 PF05726 Pirin C-terminal cupin domain JM952_07025 PF04493 Endonuclease V JM952_07030 PF00300 Histidine phosphatase superfamily (branch 1) JM952_07040 PF01431 Peptidase family M13 JM952_07040 PF05649 Peptidase family M13 JM952_07045 PF13091 PLD-like domain JM952_07050 PF01339 CheB methylesterase JM952_07050 PF00072 Response regulator receiver domain JM952_07055 PF03705 CheR methyltransferase, all-alpha domain JM952_07055 PF01739 CheR methyltransferase, SAM binding domain JM952_07060 PF00563 EAL domain JM952_07060 PF03707 Bacterial signalling protein N terminal repeat JM952_07060 PF00990 Diguanylate cyclase, GGDEF domain JM952_07065 PF01584 CheW-like domain JM952_07070 PF00672 HAMP domain JM952_07070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_07075 PF01584 CheW-like domain JM952_07075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_07075 PF02895 Signal transducing histidine kinase, homodimeric domain JM952_07075 PF09078 CheY binding JM952_07075 PF01627 Hpt domain JM952_07085 PF00270 DEAD/DEAH box helicase JM952_07085 PF03461 TRCF domain JM952_07085 PF02559 CarD-like/TRCF domain JM952_07085 PF17757 UvrB interaction domain JM952_07085 PF00271 Helicase conserved C-terminal domain JM952_07100 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JM952_07105 PF00486 Transcriptional regulatory protein, C terminal JM952_07105 PF00072 Response regulator receiver domain JM952_07110 PF00672 HAMP domain JM952_07110 PF00512 His Kinase A (phospho-acceptor) domain JM952_07110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_07115 PF06123 Inner membrane protein CreD JM952_07145 PF00749 tRNA synthetases class I (E and Q), catalytic domain JM952_07150 PF01475 Ferric uptake regulator family JM952_07160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JM952_07160 PF00529 HlyD membrane-fusion protein of T1SS JM952_07165 PF00873 AcrB/AcrD/AcrF family JM952_07170 PF02321 Outer membrane efflux protein JM952_07175 PF00440 Bacterial regulatory proteins, tetR family JM952_07175 PF16859 Tetracyclin repressor-like, C-terminal domain JM952_07180 PF00248 Aldo/keto reductase family JM952_07185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_07185 PF03466 LysR substrate binding domain JM952_07195 PF06719 AraC-type transcriptional regulator N-terminus JM952_07195 PF12833 Helix-turn-helix domain JM952_07215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_07215 PF03466 LysR substrate binding domain JM952_07220 PF07690 Major Facilitator Superfamily JM952_07260 PF01654 Cytochrome bd terminal oxidase subunit I JM952_07265 PF02322 Cytochrome bd terminal oxidase subunit II JM952_07280 PF00593 TonB dependent receptor JM952_07280 PF07715 TonB-dependent Receptor Plug Domain JM952_07295 PF00654 Voltage gated chloride channel JM952_07305 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JM952_07305 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JM952_07335 PF01494 FAD binding domain JM952_07360 PF00271 Helicase conserved C-terminal domain JM952_07360 PF00270 DEAD/DEAH box helicase JM952_07360 PF03880 DbpA RNA binding domain JM952_07365 PF00563 EAL domain JM952_07365 PF00990 Diguanylate cyclase, GGDEF domain JM952_07365 PF08448 PAS fold JM952_07370 PF00849 RNA pseudouridylate synthase JM952_07370 PF01479 S4 domain JM952_07385 PF03737 Aldolase/RraA JM952_07390 PF00144 Beta-lactamase JM952_07395 PF00999 Sodium/hydrogen exchanger family JM952_07400 PF00005 ABC transporter JM952_07400 PF00664 ABC transporter transmembrane region JM952_07435 PF01022 Bacterial regulatory protein, arsR family JM952_07440 PF03466 LysR substrate binding domain JM952_07440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_07455 PF04070 Domain of unknown function (DUF378) JM952_07465 PF00085 Thioredoxin JM952_07475 PF00133 tRNA synthetases class I (I, L, M and V) JM952_07475 PF08264 Anticodon-binding domain of tRNA JM952_07475 PF13603 Leucyl-tRNA synthetase, Domain 2 JM952_07490 PF01467 Cytidylyltransferase-like JM952_07505 PF02590 Predicted SPOUT methyltransferase JM952_07520 PF04402 Protein of unknown function (DUF541) JM952_07525 PF02545 Maf-like protein JM952_07530 PF00575 S1 RNA binding domain JM952_07530 PF10150 Ribonuclease E/G family JM952_07535 PF13502 AsmA-like C-terminal region JM952_07535 PF13116 Protein of unknown function JM952_07545 PF01523 Putative modulator of DNA gyrase JM952_07550 PF04751 Protein of unknown function (DUF615) JM952_07555 PF01523 Putative modulator of DNA gyrase JM952_07575 PF00348 Polyprenyl synthetase JM952_07580 PF02609 Exonuclease VII small subunit JM952_07585 PF01171 PP-loop family JM952_07585 PF09179 TilS substrate binding domain JM952_07585 PF11734 TilS substrate C-terminal domain JM952_07590 PF00245 Alkaline phosphatase JM952_07595 PF00375 Sodium:dicarboxylate symporter family JM952_07615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_07615 PF00512 His Kinase A (phospho-acceptor) domain JM952_07620 PF00158 Sigma-54 interaction domain JM952_07620 PF00072 Response regulator receiver domain JM952_07620 PF02954 Bacterial regulatory protein, Fis family JM952_07645 PF00877 NlpC/P60 family JM952_07650 PF00877 NlpC/P60 family JM952_07655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JM952_07660 PF04235 Protein of unknown function (DUF418) JM952_07665 PF01266 FAD dependent oxidoreductase JM952_07670 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JM952_07670 PF07992 Pyridine nucleotide-disulphide oxidoreductase JM952_07690 PF05649 Peptidase family M13 JM952_07690 PF01431 Peptidase family M13 JM952_07695 PF01431 Peptidase family M13 JM952_07695 PF05649 Peptidase family M13 JM952_07710 PF00593 TonB dependent receptor JM952_07710 PF07715 TonB-dependent Receptor Plug Domain JM952_07715 PF10609 NUBPL iron-transfer P-loop NTPase JM952_07720 PF00692 dUTPase JM952_07740 PF01738 Dienelactone hydrolase family JM952_07745 PF02661 Fic/DOC family JM952_07750 PF00919 Uncharacterized protein family UPF0004 JM952_07750 PF18693 TRAM domain JM952_07750 PF04055 Radical SAM superfamily JM952_07755 PF03449 Transcription elongation factor, N-terminal JM952_07755 PF01272 Transcription elongation factor, GreA/GreB, C-term JM952_07770 PF00293 NUDIX domain JM952_07780 PF05872 Bacterial protein of unknown function (DUF853) JM952_07795 PF02666 Phosphatidylserine decarboxylase JM952_07800 PF02630 SCO1/SenC JM952_07805 PF05175 Methyltransferase small domain JM952_07815 PF01264 Chorismate synthase JM952_07820 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JM952_07820 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JM952_07825 PF01118 Semialdehyde dehydrogenase, NAD binding domain JM952_07825 PF02774 Semialdehyde dehydrogenase, dimerisation domain JM952_07840 PF01416 tRNA pseudouridine synthase JM952_07845 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JM952_07850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_07850 PF03466 LysR substrate binding domain JM952_07855 PF00291 Pyridoxal-phosphate dependent enzyme JM952_07865 PF00290 Tryptophan synthase alpha chain JM952_07870 PF01039 Carboxyl transferase domain JM952_07870 PF17848 Acetyl-coA carboxylase zinc finger domain JM952_07875 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JM952_07875 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JM952_07875 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JM952_07875 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JM952_07890 PF00563 EAL domain JM952_07890 PF00990 Diguanylate cyclase, GGDEF domain JM952_07890 PF03707 Bacterial signalling protein N terminal repeat JM952_07925 PF00106 short chain dehydrogenase JM952_07930 PF00121 Triosephosphate isomerase JM952_07945 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JM952_07950 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JM952_07955 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JM952_07960 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JM952_07970 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JM952_07970 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JM952_07970 PF10531 SLBB domain JM952_07975 PF00384 Molybdopterin oxidoreductase JM952_07975 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JM952_07975 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal JM952_07980 PF00146 NADH dehydrogenase JM952_07985 PF12838 4Fe-4S dicluster domain JM952_07990 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JM952_07995 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JM952_08000 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JM952_08000 PF00361 Proton-conducting membrane transporter JM952_08005 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus JM952_08005 PF00361 Proton-conducting membrane transporter JM952_08010 PF00361 Proton-conducting membrane transporter JM952_08020 PF02576 RimP N-terminal domain JM952_08020 PF17384 RimP C-terminal SH3 domain JM952_08025 PF13184 NusA-like KH domain JM952_08025 PF08529 NusA N-terminal domain JM952_08025 PF00575 S1 RNA binding domain JM952_08030 PF00009 Elongation factor Tu GTP binding domain JM952_08030 PF11987 Translation-initiation factor 2 JM952_08030 PF08364 Bacterial translation initiation factor IF-2 associated region JM952_08030 PF04760 Translation initiation factor IF-2, N-terminal region JM952_08035 PF02033 Ribosome-binding factor A JM952_08040 PF09157 Pseudouridine synthase II TruB, C-terminal JM952_08040 PF01509 TruB family pseudouridylate synthase (N terminal domain) JM952_08040 PF16198 tRNA pseudouridylate synthase B C-terminal domain JM952_08045 PF00312 Ribosomal protein S15 JM952_08050 PF01138 3' exoribonuclease family, domain 1 JM952_08050 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JM952_08050 PF00013 KH domain JM952_08050 PF00575 S1 RNA binding domain JM952_08050 PF03725 3' exoribonuclease family, domain 2 JM952_08060 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JM952_08060 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JM952_08070 PF00731 AIR carboxylase JM952_08075 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JM952_08075 PF02222 ATP-grasp domain JM952_08080 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JM952_08080 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JM952_08085 PF00462 Glutaredoxin JM952_08095 PF01914 MarC family integral membrane protein JM952_08100 PF00593 TonB dependent receptor JM952_08105 PF11892 Domain of unknown function (DUF3412) JM952_08105 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases JM952_08105 PF03641 Possible lysine decarboxylase JM952_08110 PF07694 5TMR of 5TMR-LYT JM952_08110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_08110 PF06580 Histidine kinase JM952_08135 PF05567 Neisseria PilC beta-propeller domain JM952_08140 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor JM952_08140 PF07963 Prokaryotic N-terminal methylation motif JM952_08150 PF07963 Prokaryotic N-terminal methylation motif JM952_08150 PF00114 Pilin (bacterial filament) JM952_08155 PF12344 Ultra-violet resistance protein B JM952_08155 PF02151 UvrB/uvrC motif JM952_08155 PF04851 Type III restriction enzyme, res subunit JM952_08155 PF17757 UvrB interaction domain JM952_08155 PF00271 Helicase conserved C-terminal domain JM952_08170 PF02534 Type IV secretory system Conjugative DNA transfer JM952_08190 PF03743 Bacterial conjugation TrbI-like protein JM952_08195 PF00437 Type II/IV secretion system protein JM952_08200 PF01464 Transglycosylase SLT domain JM952_08210 PF05101 Type IV secretory pathway, VirB3-like protein JM952_08215 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JM952_08240 PF04717 Type VI secretion system, phage-baseplate injector JM952_08240 PF01471 Putative peptidoglycan binding domain JM952_08280 PF00128 Alpha amylase, catalytic domain JM952_08295 PF10566 Glycoside hydrolase 97 JM952_08295 PF14508 Glycosyl-hydrolase 97 N-terminal JM952_08295 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation JM952_08305 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JM952_08310 PF00686 Starch binding domain JM952_08310 PF00128 Alpha amylase, catalytic domain JM952_08315 PF00356 Bacterial regulatory proteins, lacI family JM952_08320 PF02824 TGS domain JM952_08320 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JM952_08320 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JM952_08320 PF03129 Anticodon binding domain JM952_08325 PF00707 Translation initiation factor IF-3, C-terminal domain JM952_08325 PF05198 Translation initiation factor IF-3, N-terminal domain JM952_08330 PF01632 Ribosomal protein L35 JM952_08335 PF00453 Ribosomal protein L20 JM952_08340 PF01409 tRNA synthetases class II core domain (F) JM952_08340 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JM952_08345 PF01588 Putative tRNA binding domain JM952_08345 PF03147 Ferredoxin-fold anticodon binding domain JM952_08345 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JM952_08345 PF03483 B3/4 domain JM952_08345 PF03484 tRNA synthetase B5 domain JM952_08350 PF00216 Bacterial DNA-binding protein JM952_08355 PF13411 MerR HTH family regulatory protein JM952_08375 PF02397 Bacterial sugar transferase JM952_08395 PF13439 Glycosyltransferase Family 4 JM952_08395 PF00534 Glycosyl transferases group 1 JM952_08405 PF01943 Polysaccharide biosynthesis protein JM952_08420 PF03808 Glycosyl transferase WecB/TagA/CpsF family JM952_08435 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JM952_08435 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JM952_08445 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family JM952_08465 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JM952_08465 PF02779 Transketolase, pyrimidine binding domain JM952_08465 PF02780 Transketolase, C-terminal domain JM952_08475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JM952_08475 PF02770 Acyl-CoA dehydrogenase, middle domain JM952_08475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JM952_08475 PF12806 Acetyl-CoA dehydrogenase C-terminal like JM952_08510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_08510 PF00512 His Kinase A (phospho-acceptor) domain JM952_08510 PF08448 PAS fold JM952_08510 PF13188 PAS domain JM952_08510 PF00072 Response regulator receiver domain JM952_08535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_08535 PF00072 Response regulator receiver domain JM952_08535 PF13426 PAS domain JM952_08545 PF04362 Bacterial Fe(2+) trafficking JM952_08550 PF14815 NUDIX domain JM952_08550 PF00730 HhH-GPD superfamily base excision DNA repair protein JM952_08550 PF00633 Helix-hairpin-helix motif JM952_08555 PF02881 SRP54-type protein, helical bundle domain JM952_08555 PF00448 SRP54-type protein, GTPase domain JM952_08565 PF05544 Proline racemase JM952_08570 PF01266 FAD dependent oxidoreductase JM952_08580 PF07992 Pyridine nucleotide-disulphide oxidoreductase JM952_08580 PF04324 BFD-like [2Fe-2S] binding domain JM952_08585 PF00701 Dihydrodipicolinate synthetase family JM952_08590 PF00171 Aldehyde dehydrogenase family JM952_08595 PF00557 Metallopeptidase family M24 JM952_08595 PF01321 Creatinase/Prolidase N-terminal domain JM952_08620 PF13520 Amino acid permease JM952_08655 PF07715 TonB-dependent Receptor Plug Domain JM952_08655 PF00593 TonB dependent receptor JM952_08660 PF07532 Bacterial Ig-like domain (group 4) JM952_08665 PF04616 Glycosyl hydrolases family 43 JM952_08670 PF00326 Prolyl oligopeptidase family JM952_08670 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region JM952_08680 PF07715 TonB-dependent Receptor Plug Domain JM952_08680 PF00593 TonB dependent receptor JM952_08720 PF13276 HTH-like domain JM952_08720 PF13683 Integrase core domain JM952_08725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_08725 PF00183 Hsp90 protein JM952_08735 PF01467 Cytidylyltransferase-like JM952_08745 PF00037 4Fe-4S binding domain JM952_08755 PF02927 Cellulase N-terminal ig-like domain JM952_08755 PF00759 Glycosyl hydrolase family 9 JM952_08785 PF00202 Aminotransferase class-III JM952_08795 PF02547 Queuosine biosynthesis protein JM952_08800 PF01702 Queuine tRNA-ribosyltransferase JM952_08805 PF02699 Preprotein translocase subunit JM952_08810 PF07549 SecD/SecF GG Motif JM952_08810 PF02355 Protein export membrane protein JM952_08810 PF13721 SecD export protein N-terminal TM region JM952_08815 PF02355 Protein export membrane protein JM952_08815 PF07549 SecD/SecF GG Motif JM952_08830 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JM952_08835 PF00294 pfkB family carbohydrate kinase JM952_08840 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JM952_08840 PF00381 PTS HPr component phosphorylation site JM952_08840 PF02896 PEP-utilising enzyme, TIM barrel domain JM952_08840 PF00391 PEP-utilising enzyme, mobile domain JM952_08840 PF05524 PEP-utilising enzyme, N-terminal JM952_08845 PF00356 Bacterial regulatory proteins, lacI family JM952_08850 PF00873 AcrB/AcrD/AcrF family JM952_08855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JM952_08855 PF00529 HlyD membrane-fusion protein of T1SS JM952_08865 PF05088 Bacterial NAD-glutamate dehydrogenase JM952_08870 PF12833 Helix-turn-helix domain JM952_08875 PF00857 Isochorismatase family JM952_08880 PF07690 Major Facilitator Superfamily JM952_08885 PF00072 Response regulator receiver domain JM952_08890 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JM952_08890 PF00672 HAMP domain JM952_08890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_08890 PF00512 His Kinase A (phospho-acceptor) domain JM952_08890 PF01627 Hpt domain JM952_08890 PF00072 Response regulator receiver domain JM952_08895 PF04286 Protein of unknown function (DUF445) JM952_08905 PF00202 Aminotransferase class-III JM952_08910 PF07690 Major Facilitator Superfamily JM952_08915 PF02634 FdhD/NarQ family JM952_08920 PF00384 Molybdopterin oxidoreductase JM952_08930 PF00083 Sugar (and other) transporter JM952_08930 PF07690 Major Facilitator Superfamily JM952_08935 PF01814 Hemerythrin HHE cation binding domain JM952_08940 PF00072 Response regulator receiver domain JM952_08940 PF00990 Diguanylate cyclase, GGDEF domain JM952_08945 PF01266 FAD dependent oxidoreductase JM952_08950 PF00120 Glutamine synthetase, catalytic domain JM952_08955 PF07722 Peptidase C26 JM952_08960 PF00120 Glutamine synthetase, catalytic domain JM952_08965 PF00202 Aminotransferase class-III JM952_08970 PF13416 Bacterial extracellular solute-binding protein JM952_08975 PF13533 Biotin-lipoyl like JM952_08980 PF07690 Major Facilitator Superfamily JM952_08985 PF02321 Outer membrane efflux protein JM952_08990 PF00005 ABC transporter JM952_08990 PF08402 TOBE domain JM952_09000 PF00528 Binding-protein-dependent transport system inner membrane component JM952_09005 PF00528 Binding-protein-dependent transport system inner membrane component JM952_09015 PF00171 Aldehyde dehydrogenase family JM952_09030 PF00571 CBS domain JM952_09030 PF03471 Transporter associated domain JM952_09040 PF02130 Uncharacterized protein family UPF0054 JM952_09050 PF02562 PhoH-like protein JM952_09055 PF04055 Radical SAM superfamily JM952_09055 PF00919 Uncharacterized protein family UPF0004 JM952_09055 PF01938 TRAM domain JM952_09060 PF02798 Glutathione S-transferase, N-terminal domain JM952_09060 PF14497 Glutathione S-transferase, C-terminal domain JM952_09070 PF01464 Transglycosylase SLT domain JM952_09075 PF00355 Rieske [2Fe-2S] domain JM952_09075 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JM952_09080 PF00032 Cytochrome b(C-terminal)/b6/petD JM952_09080 PF00033 Cytochrome b/b6/petB JM952_09085 PF02167 Cytochrome C1 family JM952_09090 PF00043 Glutathione S-transferase, C-terminal domain JM952_09090 PF02798 Glutathione S-transferase, N-terminal domain JM952_09095 PF04386 Stringent starvation protein B JM952_09110 PF00270 DEAD/DEAH box helicase JM952_09110 PF08494 DEAD/H associated JM952_09110 PF00271 Helicase conserved C-terminal domain JM952_09115 PF02245 Methylpurine-DNA glycosylase (MPG) JM952_09120 PF02203 Tar ligand binding domain homologue JM952_09120 PF00672 HAMP domain JM952_09120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_09125 PF01584 CheW-like domain JM952_09155 PF01381 Helix-turn-helix JM952_09170 PF13356 Arm DNA-binding domain JM952_09170 PF00589 Phage integrase family JM952_09190 PF13298 DNA polymerase Ligase (LigD) JM952_09190 PF01068 ATP dependent DNA ligase domain JM952_09190 PF04679 ATP dependent DNA ligase C terminal region JM952_09195 PF01612 3'-5' exonuclease JM952_09195 PF00570 HRDC domain JM952_09200 PF03781 Sulfatase-modifying factor enzyme 1 JM952_09210 PF02601 Exonuclease VII, large subunit JM952_09210 PF13742 OB-fold nucleic acid binding domain JM952_09215 PF08331 Domain of unknown function (DUF1730) JM952_09220 PF03853 YjeF-related protein N-terminus JM952_09220 PF01256 Carbohydrate kinase JM952_09230 PF11741 AMIN domain JM952_09230 PF01520 N-acetylmuramoyl-L-alanine amidase JM952_09235 PF08676 MutL C terminal dimerisation domain JM952_09235 PF01119 DNA mismatch repair protein, C-terminal domain JM952_09250 PF05233 PHB accumulation regulatory domain JM952_09250 PF07879 PHB/PHA accumulation regulator DNA-binding domain JM952_09255 PF00106 short chain dehydrogenase JM952_09260 PF00749 tRNA synthetases class I (E and Q), catalytic domain JM952_09265 PF01435 Peptidase family M48 JM952_09270 PF00990 Diguanylate cyclase, GGDEF domain JM952_09270 PF03707 Bacterial signalling protein N terminal repeat JM952_09270 PF00563 EAL domain JM952_09280 PF07152 YaeQ protein JM952_09285 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JM952_09290 PF00313 'Cold-shock' DNA-binding domain JM952_09300 PF07859 alpha/beta hydrolase fold JM952_09305 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JM952_09310 PF00156 Phosphoribosyl transferase domain JM952_09315 PF03880 DbpA RNA binding domain JM952_09315 PF00270 DEAD/DEAH box helicase JM952_09315 PF00271 Helicase conserved C-terminal domain JM952_09320 PF00005 ABC transporter JM952_09320 PF16326 ABC transporter C-terminal domain JM952_09320 PF12848 ABC transporter JM952_09330 PF00545 ribonuclease JM952_09335 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JM952_09335 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JM952_09340 PF00459 Inositol monophosphatase family JM952_09345 PF00588 SpoU rRNA Methylase family JM952_09355 PF03707 Bacterial signalling protein N terminal repeat JM952_09355 PF00990 Diguanylate cyclase, GGDEF domain JM952_09355 PF13188 PAS domain JM952_09355 PF00563 EAL domain JM952_09360 PF04055 Radical SAM superfamily JM952_09365 PF09285 Elongation factor P, C-terminal JM952_09365 PF08207 Elongation factor P (EF-P) KOW-like domain JM952_09365 PF01132 Elongation factor P (EF-P) OB domain JM952_09375 PF01979 Amidohydrolase family JM952_09385 PF13419 Haloacid dehalogenase-like hydrolase JM952_09395 PF00295 Glycosyl hydrolases family 28 JM952_09400 PF01095 Pectinesterase JM952_09415 PF00753 Metallo-beta-lactamase superfamily JM952_09425 PF05985 Ethanolamine ammonia-lyase light chain (EutC) JM952_09430 PF06751 Ethanolamine ammonia lyase large subunit (EutB) JM952_09440 PF08460 Bacterial SH3 domain JM952_09440 PF01551 Peptidase family M23 JM952_09445 PF01979 Amidohydrolase family JM952_09450 PF01809 Putative membrane protein insertion efficiency factor JM952_09455 PF01258 Prokaryotic dksA/traR C4-type zinc finger JM952_09470 PF07690 Major Facilitator Superfamily JM952_09475 PF02657 Fe-S metabolism associated domain JM952_09480 PF09190 DALR domain JM952_09480 PF01406 tRNA synthetases class I (C) catalytic domain JM952_09490 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JM952_09490 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JM952_09500 PF00764 Arginosuccinate synthase JM952_09505 PF01546 Peptidase family M20/M25/M40 JM952_09505 PF07687 Peptidase dimerisation domain JM952_09510 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase JM952_09510 PF00696 Amino acid kinase family JM952_09520 PF01118 Semialdehyde dehydrogenase, NAD binding domain JM952_09525 PF00206 Lyase JM952_09540 PF01472 PUA domain JM952_09540 PF00696 Amino acid kinase family JM952_09545 PF00171 Aldehyde dehydrogenase family JM952_09555 PF02129 X-Pro dipeptidyl-peptidase (S15 family) JM952_09555 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain JM952_09575 PF02322 Cytochrome bd terminal oxidase subunit II JM952_09580 PF01654 Cytochrome bd terminal oxidase subunit I JM952_09585 PF00664 ABC transporter transmembrane region JM952_09585 PF00005 ABC transporter JM952_09590 PF00005 ABC transporter JM952_09590 PF00664 ABC transporter transmembrane region JM952_09600 PF00561 alpha/beta hydrolase fold JM952_09615 PF03918 Cytochrome C biogenesis protein JM952_09620 PF08534 Redoxin JM952_09625 PF01578 Cytochrome C assembly protein JM952_09625 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JM952_09630 PF03100 CcmE JM952_09640 PF01578 Cytochrome C assembly protein JM952_09645 PF03379 CcmB protein JM952_09650 PF00005 ABC transporter JM952_09655 PF00155 Aminotransferase class I and II JM952_09660 PF00795 Carbon-nitrogen hydrolase JM952_09675 PF00849 RNA pseudouridylate synthase JM952_09675 PF01479 S4 domain JM952_09680 PF04079 Segregation and condensation complex subunit ScpB JM952_09685 PF02616 Segregation and condensation protein ScpA JM952_09690 PF03795 YCII-related domain JM952_09700 PF00356 Bacterial regulatory proteins, lacI family JM952_09715 PF13416 Bacterial extracellular solute-binding protein JM952_09720 PF00528 Binding-protein-dependent transport system inner membrane component JM952_09725 PF00528 Binding-protein-dependent transport system inner membrane component JM952_09750 PF00795 Carbon-nitrogen hydrolase JM952_09755 PF04371 Porphyromonas-type peptidyl-arginine deiminase JM952_09765 PF00444 Ribosomal protein L36 JM952_09770 PF02224 Cytidylate kinase JM952_09775 PF00575 S1 RNA binding domain JM952_09780 PF00216 Bacterial DNA-binding protein JM952_09790 PF18073 Rubredoxin metal binding domain JM952_09795 PF00953 Glycosyl transferase family 4 JM952_09800 PF02719 Polysaccharide biosynthesis protein JM952_09805 PF00483 Nucleotidyl transferase JM952_09810 PF00999 Sodium/hydrogen exchanger family JM952_09810 PF02254 TrkA-N domain JM952_09820 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JM952_09820 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JM952_09825 PF00478 IMP dehydrogenase / GMP reductase domain JM952_09825 PF00571 CBS domain JM952_09835 PF02540 NAD synthase JM952_09835 PF00117 Glutamine amidotransferase class-I JM952_09835 PF00958 GMP synthase C terminal domain JM952_09850 PF00196 Bacterial regulatory proteins, luxR family JM952_09850 PF00072 Response regulator receiver domain JM952_09855 PF13185 GAF domain JM952_09855 PF13492 GAF domain JM952_09855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_09855 PF07730 Histidine kinase JM952_09865 PF00857 Isochorismatase family JM952_09875 PF07969 Amidohydrolase family JM952_09880 PF05977 Transmembrane secretion effector JM952_09890 PF00561 alpha/beta hydrolase fold JM952_09895 PF01566 Natural resistance-associated macrophage protein JM952_09900 PF01325 Iron dependent repressor, N-terminal DNA binding domain JM952_09900 PF02742 Iron dependent repressor, metal binding and dimerisation domain JM952_09905 PF14437 MafB19-like deaminase JM952_09910 PF00929 Exonuclease JM952_09915 PF00924 Mechanosensitive ion channel JM952_09915 PF05552 Conserved TM helix JM952_09920 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JM952_09920 PF00391 PEP-utilising enzyme, mobile domain JM952_09920 PF02896 PEP-utilising enzyme, TIM barrel domain JM952_09925 PF03618 Kinase/pyrophosphorylase JM952_09945 PF01066 CDP-alcohol phosphatidyltransferase JM952_09955 PF00561 alpha/beta hydrolase fold JM952_09970 PF01266 FAD dependent oxidoreductase JM952_09970 PF00355 Rieske [2Fe-2S] domain JM952_09980 PF17674 HHH domain JM952_09980 PF00575 S1 RNA binding domain JM952_09980 PF09371 Tex-like protein N-terminal domain JM952_09980 PF16921 Tex protein YqgF-like domain JM952_09985 PF00563 EAL domain JM952_09985 PF00990 Diguanylate cyclase, GGDEF domain JM952_09985 PF08447 PAS fold JM952_09985 PF08448 PAS fold JM952_10025 PF00034 Cytochrome c JM952_10035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JM952_10040 PF00873 AcrB/AcrD/AcrF family JM952_10045 PF00873 AcrB/AcrD/AcrF family JM952_10050 PF01081 KDPG and KHG aldolase JM952_10055 PF00920 Dehydratase family JM952_10060 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JM952_10065 PF02685 Glucokinase JM952_10070 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JM952_10070 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JM952_10075 PF17912 MalK OB fold domain JM952_10075 PF00005 ABC transporter JM952_10080 PF01571 Aminomethyltransferase folate-binding domain JM952_10090 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JM952_10095 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JM952_10100 PF00890 FAD binding domain JM952_10100 PF02910 Fumarate reductase flavoprotein C-term JM952_10110 PF13085 2Fe-2S iron-sulfur cluster binding domain JM952_10115 PF03937 Flavinator of succinate dehydrogenase JM952_10125 PF02687 FtsX-like permease family JM952_10125 PF12704 MacB-like periplasmic core domain JM952_10130 PF00005 ABC transporter JM952_10140 PF03772 Competence protein JM952_10140 PF00753 Metallo-beta-lactamase superfamily JM952_10145 PF01618 MotA/TolQ/ExbB proton channel family JM952_10155 PF00005 ABC transporter JM952_10155 PF00664 ABC transporter transmembrane region JM952_10160 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JM952_10165 PF02348 Cytidylyltransferase JM952_10170 PF01451 Low molecular weight phosphotyrosine protein phosphatase JM952_10180 PF01541 GIY-YIG catalytic domain JM952_10180 PF02151 UvrB/uvrC motif JM952_10180 PF08459 UvrC Helix-hairpin-helix N-terminal JM952_10185 PF01066 CDP-alcohol phosphatidyltransferase JM952_10205 PF00589 Phage integrase family JM952_10205 PF13356 Arm DNA-binding domain JM952_10220 PF05394 Avirulence protein JM952_10260 PF03466 LysR substrate binding domain JM952_10260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_10350 PF04002 RadC-like JAB domain JM952_10445 PF00580 UvrD/REP helicase N-terminal domain JM952_10445 PF13361 UvrD-like helicase C-terminal domain JM952_10510 PF13406 Transglycosylase SLT domain JM952_10525 PF00202 Aminotransferase class-III JM952_10545 PF01751 Toprim domain JM952_10545 PF01131 DNA topoisomerase JM952_10550 PF00436 Single-strand binding protein family JM952_10585 PF13614 AAA domain JM952_10610 PF10544 T5orf172 domain JM952_10650 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JM952_10650 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JM952_10650 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JM952_10660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JM952_10670 PF17773 UPF0176 acylphosphatase like domain JM952_10670 PF00581 Rhodanese-like domain JM952_10675 PF00196 Bacterial regulatory proteins, luxR family JM952_10675 PF00072 Response regulator receiver domain JM952_10680 PF01526 Tn3 transposase DDE domain JM952_10680 PF13700 Domain of unknown function (DUF4158) JM952_10700 PF00672 HAMP domain JM952_10700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_10700 PF02203 Tar ligand binding domain homologue JM952_10735 PF17091 Inovirus G7P protein JM952_10740 PF02303 Helix-destabilising protein JM952_10765 PF01106 NifU-like domain JM952_10770 PF01329 Pterin 4 alpha carbinolamine dehydratase JM952_10780 PF02535 ZIP Zinc transporter JM952_10785 PF01479 S4 domain JM952_10785 PF00849 RNA pseudouridylate synthase JM952_10790 PF00575 S1 RNA binding domain JM952_10790 PF10150 Ribonuclease E/G family JM952_10790 PF12111 Polyribonucleotide phosphorylase C terminal JM952_10795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_10795 PF02203 Tar ligand binding domain homologue JM952_10795 PF00672 HAMP domain JM952_10815 PF13700 Domain of unknown function (DUF4158) JM952_10815 PF01526 Tn3 transposase DDE domain JM952_10835 PF00072 Response regulator receiver domain JM952_10835 PF04397 LytTr DNA-binding domain JM952_10845 PF13188 PAS domain JM952_10845 PF00072 Response regulator receiver domain JM952_10845 PF08448 PAS fold JM952_10845 PF00512 His Kinase A (phospho-acceptor) domain JM952_10845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_10850 PF00072 Response regulator receiver domain JM952_10850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_10850 PF13426 PAS domain JM952_10855 PF02203 Tar ligand binding domain homologue JM952_10855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_10855 PF00672 HAMP domain JM952_10895 PF02203 Tar ligand binding domain homologue JM952_10895 PF00672 HAMP domain JM952_10895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_10900 PF00593 TonB dependent receptor JM952_10900 PF07660 Secretin and TonB N terminus short domain JM952_10900 PF07715 TonB-dependent Receptor Plug Domain JM952_10905 PF09335 SNARE associated Golgi protein JM952_10935 PF01638 HxlR-like helix-turn-helix JM952_10950 PF02630 SCO1/SenC JM952_10965 PF01431 Peptidase family M13 JM952_10965 PF05649 Peptidase family M13 JM952_10980 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JM952_10985 PF07995 Glucose / Sorbosone dehydrogenase JM952_10995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_10995 PF01590 GAF domain JM952_10995 PF00360 Phytochrome region JM952_10995 PF00512 His Kinase A (phospho-acceptor) domain JM952_10995 PF08446 PAS fold JM952_11020 PF03797 Autotransporter beta-domain JM952_11020 PF00082 Subtilase family JM952_11025 PF12951 Passenger-associated-transport-repeat JM952_11025 PF12951 Passenger-associated-transport-repeat JM952_11030 PF08447 PAS fold JM952_11030 PF00990 Diguanylate cyclase, GGDEF domain JM952_11030 PF00563 EAL domain JM952_11030 PF08448 PAS fold JM952_11040 PF01339 CheB methylesterase JM952_11040 PF00072 Response regulator receiver domain JM952_11045 PF05974 Domain of unknown function (DUF892) JM952_11060 PF01266 FAD dependent oxidoreductase JM952_11070 PF00483 Nucleotidyl transferase JM952_11080 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JM952_11095 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JM952_11100 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JM952_11100 PF04324 BFD-like [2Fe-2S] binding domain JM952_11100 PF01568 Molydopterin dinucleotide binding domain JM952_11100 PF00384 Molybdopterin oxidoreductase JM952_11105 PF11723 Homotrimeric ring hydroxylase JM952_11105 PF00355 Rieske [2Fe-2S] domain JM952_11110 PF18267 Rubredoxin NAD+ reductase C-terminal domain JM952_11110 PF07992 Pyridine nucleotide-disulphide oxidoreductase JM952_11110 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JM952_11110 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JM952_11110 PF04324 BFD-like [2Fe-2S] binding domain JM952_11115 PF07690 Major Facilitator Superfamily JM952_11125 PF03861 ANTAR domain JM952_11125 PF00072 Response regulator receiver domain JM952_11130 PF10414 Sirohaem synthase dimerisation region JM952_11130 PF14824 Sirohaem biosynthesis protein central JM952_11130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JM952_11140 PF12804 MobA-like NTP transferase domain JM952_11145 PF03454 MoeA C-terminal region (domain IV) JM952_11145 PF03453 MoeA N-terminal region (domain I and II) JM952_11145 PF00994 Probable molybdopterin binding domain JM952_11155 PF03372 Endonuclease/Exonuclease/phosphatase family JM952_11165 PF08240 Alcohol dehydrogenase GroES-like domain JM952_11165 PF13823 Alcohol dehydrogenase GroES-associated JM952_11165 PF00107 Zinc-binding dehydrogenase JM952_11180 PF00067 Cytochrome P450 JM952_11185 PF00106 short chain dehydrogenase JM952_11200 PF00899 ThiF family JM952_11205 PF03454 MoeA C-terminal region (domain IV) JM952_11205 PF03453 MoeA N-terminal region (domain I and II) JM952_11205 PF00994 Probable molybdopterin binding domain JM952_11210 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JM952_11210 PF01926 50S ribosome-binding GTPase JM952_11215 PF13360 PQQ-like domain JM952_11215 PF01011 PQQ enzyme repeat JM952_11225 PF13464 Domain of unknown function (DUF4115) JM952_11235 PF04055 Radical SAM superfamily JM952_11240 PF00334 Nucleoside diphosphate kinase JM952_11250 PF00378 Enoyl-CoA hydratase/isomerase JM952_11250 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JM952_11250 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JM952_11255 PF02803 Thiolase, C-terminal domain JM952_11255 PF00108 Thiolase, N-terminal domain JM952_11260 PF00654 Voltage gated chloride channel JM952_11265 PF16193 AAA C-terminal domain JM952_11265 PF12002 MgsA AAA+ ATPase C terminal JM952_11265 PF00004 ATPase family associated with various cellular activities (AAA) JM952_11275 PF03548 Outer membrane lipoprotein carrier protein LolA JM952_11285 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JM952_11285 PF17854 FtsK alpha domain JM952_11285 PF09397 Ftsk gamma domain JM952_11285 PF01580 FtsK/SpoIIIE family JM952_11290 PF07992 Pyridine nucleotide-disulphide oxidoreductase JM952_11300 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JM952_11305 PF01176 Translation initiation factor 1A / IF-1 JM952_11310 PF00004 ATPase family associated with various cellular activities (AAA) JM952_11310 PF07724 AAA domain (Cdc48 subfamily) JM952_11310 PF17871 AAA lid domain JM952_11310 PF02861 Clp amino terminal domain, pathogenicity island component JM952_11310 PF10431 C-terminal, D2-small domain, of ClpB protein JM952_11315 PF02617 ATP-dependent Clp protease adaptor protein ClpS JM952_11320 PF00293 NUDIX domain JM952_11330 PF04356 Protein of unknown function (DUF489) JM952_11335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_11335 PF12729 Four helix bundle sensory module for signal transduction JM952_11335 PF00672 HAMP domain JM952_11350 PF00563 EAL domain JM952_11350 PF00990 Diguanylate cyclase, GGDEF domain JM952_11350 PF03707 Bacterial signalling protein N terminal repeat JM952_11355 PF07730 Histidine kinase JM952_11355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_11360 PF00563 EAL domain JM952_11360 PF03707 Bacterial signalling protein N terminal repeat JM952_11360 PF00990 Diguanylate cyclase, GGDEF domain JM952_11365 PF00512 His Kinase A (phospho-acceptor) domain JM952_11365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_11385 PF01584 CheW-like domain JM952_11385 PF00072 Response regulator receiver domain JM952_11395 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JM952_11395 PF00460 Flagella basal body rod protein JM952_11400 PF03963 Flagellar hook capping protein - N-terminal region JM952_11405 PF07559 Flagellar basal body protein FlaE JM952_11405 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JM952_11405 PF00460 Flagella basal body rod protein JM952_11410 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JM952_11410 PF00460 Flagella basal body rod protein JM952_11415 PF00460 Flagella basal body rod protein JM952_11415 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JM952_11420 PF02107 Flagellar L-ring protein JM952_11425 PF02119 Flagellar P-ring protein JM952_11430 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JM952_11430 PF10135 Rod binding protein JM952_11435 PF07196 Flagellin hook IN motif JM952_11435 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JM952_11440 PF00669 Bacterial flagellin N-terminal helical region JM952_11445 PF00700 Bacterial flagellin C-terminal helical region JM952_11445 PF00669 Bacterial flagellin N-terminal helical region JM952_11450 PF02465 Flagellar hook-associated protein 2 N-terminus JM952_11450 PF07195 Flagellar hook-associated protein 2 C-terminus JM952_11450 PF07196 Flagellin hook IN motif JM952_11455 PF02561 Flagellar protein FliS JM952_11470 PF00196 Bacterial regulatory proteins, luxR family JM952_11470 PF00072 Response regulator receiver domain JM952_11475 PF04963 Sigma-54 factor, core binding domain JM952_11475 PF00309 Sigma-54 factor, Activator interacting domain (AID) JM952_11475 PF04552 Sigma-54, DNA binding domain JM952_11480 PF01339 CheB methylesterase JM952_11480 PF00072 Response regulator receiver domain JM952_11485 PF06490 Flagellar regulatory protein FleQ JM952_11485 PF02954 Bacterial regulatory protein, Fis family JM952_11485 PF00158 Sigma-54 interaction domain JM952_11490 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JM952_11510 PF00535 Glycosyl transferase family 2 JM952_11515 PF02049 Flagellar hook-basal body complex protein FliE JM952_11520 PF01514 Secretory protein of YscJ/FliF family JM952_11520 PF08345 Flagellar M-ring protein C-terminal JM952_11525 PF14841 FliG middle domain JM952_11525 PF01706 FliG C-terminal domain JM952_11525 PF14842 FliG N-terminal domain JM952_11535 PF18269 T3SS EscN ATPase C-terminal domain JM952_11535 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JM952_11555 PF02154 Flagellar motor switch protein FliM JM952_11555 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JM952_11560 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JM952_11565 PF04347 Flagellar biosynthesis protein, FliO JM952_11570 PF00813 FliP family JM952_11575 PF01313 Bacterial export proteins, family 3 JM952_11580 PF01311 Bacterial export proteins, family 1 JM952_11585 PF00990 Diguanylate cyclase, GGDEF domain JM952_11590 PF00990 Diguanylate cyclase, GGDEF domain JM952_11595 PF03707 Bacterial signalling protein N terminal repeat JM952_11595 PF00990 Diguanylate cyclase, GGDEF domain JM952_11595 PF00563 EAL domain JM952_11600 PF01312 FlhB HrpN YscU SpaS Family JM952_11605 PF00771 FHIPEP family JM952_11610 PF00448 SRP54-type protein, GTPase domain JM952_11615 PF10609 NUBPL iron-transfer P-loop NTPase JM952_11620 PF04539 Sigma-70 region 3 JM952_11620 PF04545 Sigma-70, region 4 JM952_11620 PF04542 Sigma-70 region 2 JM952_11625 PF00072 Response regulator receiver domain JM952_11630 PF04344 Chemotaxis phosphatase, CheZ JM952_11635 PF01627 Hpt domain JM952_11635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_11635 PF00072 Response regulator receiver domain JM952_11635 PF02895 Signal transducing histidine kinase, homodimeric domain JM952_11635 PF01584 CheW-like domain JM952_11725 PF01618 MotA/TolQ/ExbB proton channel family JM952_11730 PF00691 OmpA family JM952_11730 PF13677 Membrane MotB of proton-channel complex MotA/MotB JM952_11735 PF13614 AAA domain JM952_11740 PF01584 CheW-like domain JM952_11750 PF00072 Response regulator receiver domain JM952_11755 PF02895 Signal transducing histidine kinase, homodimeric domain JM952_11755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_11755 PF01627 Hpt domain JM952_11755 PF01584 CheW-like domain JM952_11755 PF09078 CheY binding JM952_11760 PF00672 HAMP domain JM952_11760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_11760 PF17202 Single cache domain 3 JM952_11775 PF00672 HAMP domain JM952_11775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_11775 PF02203 Tar ligand binding domain homologue JM952_11780 PF00672 HAMP domain JM952_11780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_11780 PF02203 Tar ligand binding domain homologue JM952_11785 PF02203 Tar ligand binding domain homologue JM952_11785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_11785 PF00672 HAMP domain JM952_11790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_11790 PF00672 HAMP domain JM952_11790 PF02203 Tar ligand binding domain homologue JM952_11795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_11795 PF02203 Tar ligand binding domain homologue JM952_11795 PF00672 HAMP domain JM952_11800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_11800 PF00672 HAMP domain JM952_11800 PF02203 Tar ligand binding domain homologue JM952_11815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_11815 PF02203 Tar ligand binding domain homologue JM952_11815 PF00672 HAMP domain JM952_11820 PF07317 Flagellar regulator YcgR JM952_11820 PF07238 PilZ domain JM952_11825 PF01584 CheW-like domain JM952_11835 PF00672 HAMP domain JM952_11835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_11835 PF02203 Tar ligand binding domain homologue JM952_11840 PF01739 CheR methyltransferase, SAM binding domain JM952_11840 PF03705 CheR methyltransferase, all-alpha domain JM952_11845 PF03975 CheD chemotactic sensory transduction JM952_11850 PF01339 CheB methylesterase JM952_11850 PF00072 Response regulator receiver domain JM952_11855 PF00563 EAL domain JM952_11855 PF00990 Diguanylate cyclase, GGDEF domain JM952_11855 PF03707 Bacterial signalling protein N terminal repeat JM952_11860 PF00561 alpha/beta hydrolase fold JM952_11865 PF06434 Aconitate hydratase 2 N-terminus JM952_11865 PF00330 Aconitase family (aconitate hydratase) JM952_11865 PF11791 Aconitate B N-terminal domain JM952_11880 PF00330 Aconitase family (aconitate hydratase) JM952_11880 PF00694 Aconitase C-terminal domain JM952_11890 PF00501 AMP-binding enzyme JM952_11890 PF13193 AMP-binding enzyme C-terminal domain JM952_11895 PF00378 Enoyl-CoA hydratase/isomerase JM952_11900 PF00072 Response regulator receiver domain JM952_11900 PF01627 Hpt domain JM952_11900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_11900 PF00512 His Kinase A (phospho-acceptor) domain JM952_11905 PF00512 His Kinase A (phospho-acceptor) domain JM952_11905 PF01627 Hpt domain JM952_11905 PF00072 Response regulator receiver domain JM952_11905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_11910 PF00072 Response regulator receiver domain JM952_11915 PF00152 tRNA synthetases class II (D, K and N) JM952_11915 PF01336 OB-fold nucleic acid binding domain JM952_11925 PF04397 LytTr DNA-binding domain JM952_11925 PF00072 Response regulator receiver domain JM952_11950 PF01368 DHH family JM952_11950 PF02272 DHHA1 domain JM952_11950 PF17768 RecJ OB domain JM952_11960 PF03449 Transcription elongation factor, N-terminal JM952_11960 PF01272 Transcription elongation factor, GreA/GreB, C-term JM952_11965 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JM952_11965 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JM952_11965 PF02142 MGS-like domain JM952_11975 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JM952_11975 PF00117 Glutamine amidotransferase class-I JM952_11980 PF05173 Dihydrodipicolinate reductase, C-terminus JM952_11980 PF01113 Dihydrodipicolinate reductase, N-terminus JM952_11985 PF03473 MOSC domain JM952_11985 PF03475 3-alpha domain JM952_11990 PF00155 Aminotransferase class I and II JM952_12005 PF07664 Ferrous iron transport protein B C terminus JM952_12005 PF02421 Ferrous iron transport protein B JM952_12005 PF07670 Nucleoside recognition JM952_12015 PF00378 Enoyl-CoA hydratase/isomerase JM952_12020 PF00682 HMGL-like JM952_12025 PF00106 short chain dehydrogenase JM952_12030 PF01132 Elongation factor P (EF-P) OB domain JM952_12030 PF08207 Elongation factor P (EF-P) KOW-like domain JM952_12030 PF09285 Elongation factor P, C-terminal JM952_12050 PF01565 FAD binding domain JM952_12050 PF02913 FAD linked oxidases, C-terminal domain JM952_12055 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JM952_12055 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JM952_12070 PF13520 Amino acid permease JM952_12075 PF13520 Amino acid permease JM952_12080 PF00596 Class II Aldolase and Adducin N-terminal domain JM952_12085 PF03079 ARD/ARD' family JM952_12105 PF01502 Phosphoribosyl-AMP cyclohydrolase JM952_12105 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JM952_12110 PF00977 Histidine biosynthesis protein JM952_12115 PF00977 Histidine biosynthesis protein JM952_12120 PF00117 Glutamine amidotransferase class-I JM952_12125 PF00475 Imidazoleglycerol-phosphate dehydratase JM952_12130 PF00155 Aminotransferase class I and II JM952_12135 PF00815 Histidinol dehydrogenase JM952_12140 PF08029 HisG, C-terminal domain JM952_12140 PF01634 ATP phosphoribosyltransferase JM952_12150 PF03129 Anticodon binding domain JM952_12150 PF13393 Histidyl-tRNA synthetase JM952_12155 PF00027 Cyclic nucleotide-binding domain JM952_12155 PF13545 Crp-like helix-turn-helix domain JM952_12165 PF00291 Pyridoxal-phosphate dependent enzyme JM952_12165 PF14821 Threonine synthase N terminus JM952_12175 PF08544 GHMP kinases C terminal JM952_12175 PF00288 GHMP kinases N terminal domain JM952_12180 PF03447 Homoserine dehydrogenase, NAD binding domain JM952_12180 PF00742 Homoserine dehydrogenase JM952_12180 PF00696 Amino acid kinase family JM952_12180 PF01842 ACT domain JM952_12180 PF13840 ACT domain JM952_12190 PF03073 TspO/MBR family JM952_12225 PF00171 Aldehyde dehydrogenase family JM952_12240 PF01180 Dihydroorotate dehydrogenase JM952_12245 PF01565 FAD binding domain JM952_12245 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JM952_12250 PF00892 EamA-like transporter family JM952_12255 PF01177 Asp/Glu/Hydantoin racemase JM952_12265 PF01569 PAP2 superfamily JM952_12270 PF04551 GcpE protein JM952_12280 PF00072 Response regulator receiver domain JM952_12285 PF00150 Cellulase (glycosyl hydrolase family 5) JM952_12285 PF02013 Cellulose or protein binding domain JM952_12290 PF00563 EAL domain JM952_12290 PF01590 GAF domain JM952_12290 PF00990 Diguanylate cyclase, GGDEF domain JM952_12290 PF00360 Phytochrome region JM952_12295 PF00474 Sodium:solute symporter family JM952_12300 PF14310 Fibronectin type III-like domain JM952_12300 PF00933 Glycosyl hydrolase family 3 N terminal domain JM952_12300 PF01915 Glycosyl hydrolase family 3 C-terminal domain JM952_12315 PF00342 Phosphoglucose isomerase JM952_12320 PF02261 Aspartate decarboxylase JM952_12325 PF02569 Pantoate-beta-alanine ligase JM952_12330 PF02548 Ketopantoate hydroxymethyltransferase JM952_12335 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JM952_12340 PF01743 Poly A polymerase head domain JM952_12340 PF12627 Probable RNA and SrmB- binding site of polymerase A JM952_12340 PF12626 Polymerase A arginine-rich C-terminus JM952_12350 PF02649 Type I GTP cyclohydrolase folE2 JM952_12355 PF01520 N-acetylmuramoyl-L-alanine amidase JM952_12375 PF00083 Sugar (and other) transporter JM952_12385 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JM952_12385 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JM952_12395 PF16338 Domain of unknown function (DUF4968) JM952_12395 PF17137 Domain of unknown function (DUF5110) JM952_12395 PF01055 Glycosyl hydrolases family 31 JM952_12415 PF03442 Carbohydrate binding domain X2 JM952_12415 PF00942 Cellulose binding domain JM952_12430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_12430 PF03466 LysR substrate binding domain JM952_12435 PF01081 KDPG and KHG aldolase JM952_12440 PF13378 Enolase C-terminal domain-like JM952_12440 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JM952_12445 PF08450 SMP-30/Gluconolactonase/LRE-like region JM952_12450 PF05035 2-keto-3-deoxy-galactonokinase JM952_12455 PF00037 4Fe-4S binding domain JM952_12455 PF11953 Domain of unknown function (DUF3470) JM952_12465 PF00701 Dihydrodipicolinate synthetase family JM952_12480 PF00578 AhpC/TSA family JM952_12485 PF13638 PIN domain JM952_12485 PF02562 PhoH-like protein JM952_12495 PF08543 Phosphomethylpyrimidine kinase JM952_12495 PF02581 Thiamine monophosphate synthase JM952_12520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_12520 PF03466 LysR substrate binding domain JM952_12525 PF02678 Pirin JM952_12525 PF17954 Quercetinase C-terminal cupin domain JM952_12530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JM952_12530 PF08447 PAS fold JM952_12530 PF13426 PAS domain JM952_12540 PF02599 Global regulator protein family JM952_12545 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JM952_12545 PF02272 DHHA1 domain JM952_12545 PF01411 tRNA synthetases class II (A) JM952_12550 PF02631 RecX family JM952_12555 PF00154 recA bacterial DNA recombination protein JM952_12560 PF01726 LexA DNA binding domain JM952_12560 PF00717 Peptidase S24-like JM952_12565 PF03109 ABC1 family JM952_12570 PF00593 TonB dependent receptor JM952_12570 PF07715 TonB-dependent Receptor Plug Domain JM952_12580 PF02464 Competence-damaged protein JM952_12585 PF16360 GTP-binding GTPase Middle Region JM952_12585 PF13167 GTP-binding GTPase N-terminal JM952_12585 PF01926 50S ribosome-binding GTPase JM952_12590 PF17209 Hfq protein JM952_12600 PF00809 Pterin binding enzyme JM952_12605 PF00004 ATPase family associated with various cellular activities (AAA) JM952_12605 PF17862 AAA+ lid domain JM952_12605 PF01434 Peptidase family M41 JM952_12605 PF06480 FtsH Extracellular JM952_12610 PF01728 FtsJ-like methyltransferase JM952_12615 PF01985 CRS1 / YhbY (CRM) domain JM952_12625 PF01476 LysM domain JM952_12625 PF01551 Peptidase family M23 JM952_12630 PF09335 SNARE associated Golgi protein JM952_12640 PF01975 Survival protein SurE JM952_12645 PF01713 Smr domain JM952_12655 PF01142 tRNA pseudouridine synthase D (TruD) JM952_12660 PF02542 YgbB family JM952_12665 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JM952_12670 PF04977 Septum formation initiator JM952_12675 PF03952 Enolase, N-terminal domain JM952_12675 PF00113 Enolase, C-terminal TIM barrel domain JM952_12685 PF00793 DAHP synthetase I family JM952_12690 PF06418 CTP synthase N-terminus JM952_12690 PF00117 Glutamine amidotransferase class-I JM952_12700 PF01751 Toprim domain JM952_12700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_12700 PF00986 DNA gyrase B subunit, carboxyl terminus JM952_12700 PF00204 DNA gyrase B JM952_12705 PF02611 CDP-diacylglycerol pyrophosphatase JM952_12720 PF01384 Phosphate transporter family JM952_12730 PF01595 Cyclin M transmembrane N-terminal domain JM952_12730 PF00571 CBS domain JM952_12730 PF03471 Transporter associated domain JM952_12745 PF00296 Luciferase-like monooxygenase JM952_12750 PF07690 Major Facilitator Superfamily JM952_12755 PF00664 ABC transporter transmembrane region JM952_12755 PF00005 ABC transporter JM952_12775 PF13579 Glycosyl transferase 4-like domain JM952_12775 PF00534 Glycosyl transferases group 1 JM952_12780 PF00534 Glycosyl transferases group 1 JM952_12780 PF13439 Glycosyltransferase Family 4 JM952_12790 PF01979 Amidohydrolase family JM952_12790 PF13382 Adenine deaminase C-terminal domain JM952_12810 PF00535 Glycosyl transferase family 2 JM952_12815 PF01943 Polysaccharide biosynthesis protein JM952_12820 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JM952_12825 PF05523 WxcM-like, C-terminal JM952_12830 PF01292 Prokaryotic cytochrome b561 JM952_12840 PF00034 Cytochrome c JM952_12850 PF08281 Sigma-70, region 4 JM952_12850 PF04542 Sigma-70 region 2 JM952_12860 PF00082 Subtilase family JM952_12865 PF01578 Cytochrome C assembly protein JM952_12870 PF04995 Heme exporter protein D (CcmD) JM952_12875 PF03100 CcmE JM952_12880 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JM952_12880 PF01578 Cytochrome C assembly protein JM952_12885 PF08534 Redoxin JM952_12890 PF03918 Cytochrome C biogenesis protein JM952_12900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_12900 PF13426 PAS domain JM952_12900 PF00072 Response regulator receiver domain JM952_12905 PF06745 KaiC JM952_12910 PF02954 Bacterial regulatory protein, Fis family JM952_12910 PF00072 Response regulator receiver domain JM952_12910 PF00158 Sigma-54 interaction domain JM952_12915 PF08448 PAS fold JM952_12915 PF13188 PAS domain JM952_12915 PF00072 Response regulator receiver domain JM952_12915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_12915 PF00512 His Kinase A (phospho-acceptor) domain JM952_12955 PF02585 GlcNAc-PI de-N-acetylase JM952_13085 PF04002 RadC-like JAB domain JM952_13205 PF02534 Type IV secretory system Conjugative DNA transfer JM952_13300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_13300 PF03466 LysR substrate binding domain JM952_13325 PF04002 RadC-like JAB domain JM952_13355 PF03466 LysR substrate binding domain JM952_13355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_13360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JM952_13360 PF02403 Seryl-tRNA synthetase N-terminal domain JM952_13365 PF03544 Gram-negative bacterial TonB protein C-terminal JM952_13370 PF03544 Gram-negative bacterial TonB protein C-terminal JM952_13375 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JM952_13380 PF01842 ACT domain JM952_13380 PF01817 Chorismate mutase type II JM952_13380 PF00800 Prephenate dehydratase JM952_13385 PF00266 Aminotransferase class-V JM952_13390 PF00174 Oxidoreductase molybdopterin binding domain JM952_13395 PF01794 Ferric reductase like transmembrane component JM952_13420 PF07702 UTRA domain JM952_13420 PF00392 Bacterial regulatory proteins, gntR family JM952_13430 PF01979 Amidohydrolase family JM952_13435 PF00221 Aromatic amino acid lyase JM952_13445 PF01175 Urocanase Rossmann-like domain JM952_13445 PF17392 Urocanase C-terminal domain JM952_13445 PF17391 Urocanase N-terminal domain JM952_13455 PF13360 PQQ-like domain JM952_13460 PF00521 DNA gyrase/topoisomerase IV, subunit A JM952_13460 PF03989 DNA gyrase C-terminal domain, beta-propeller JM952_13465 PF01008 Initiation factor 2 subunit family JM952_13475 PF00152 tRNA synthetases class II (D, K and N) JM952_13480 PF00533 BRCA1 C Terminus (BRCT) domain JM952_13480 PF01653 NAD-dependent DNA ligase adenylation domain JM952_13480 PF03120 NAD-dependent DNA ligase OB-fold domain JM952_13480 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JM952_13480 PF12826 Helix-hairpin-helix motif JM952_13485 PF00155 Aminotransferase class I and II JM952_13490 PF04354 ZipA, C-terminal FtsZ-binding domain JM952_13495 PF02463 RecF/RecN/SMC N terminal domain JM952_13505 PF03948 Ribosomal protein L9, C-terminal domain JM952_13505 PF01281 Ribosomal protein L9, N-terminal domain JM952_13510 PF01084 Ribosomal protein S18 JM952_13515 PF01250 Ribosomal protein S6 JM952_13520 PF01521 Iron-sulphur cluster biosynthesis JM952_13525 PF00152 tRNA synthetases class II (D, K and N) JM952_13525 PF01336 OB-fold nucleic acid binding domain JM952_13550 PF00484 Carbonic anhydrase JM952_13555 PF06052 3-hydroxyanthranilic acid dioxygenase JM952_13565 PF00266 Aminotransferase class-V JM952_13570 PF01494 FAD binding domain JM952_13575 PF08411 Exonuclease C-terminal JM952_13575 PF00929 Exonuclease JM952_13600 PF01513 ATP-NAD kinase JM952_13605 PF10672 S-adenosylmethionine-dependent methyltransferase JM952_13605 PF02926 THUMP domain JM952_13605 PF01170 Putative RNA methylase family UPF0020 JM952_13610 PF00005 ABC transporter JM952_13610 PF12848 ABC transporter JM952_13645 PF00581 Rhodanese-like domain JM952_13650 PF00293 NUDIX domain JM952_13655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JM952_13655 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JM952_13660 PF00378 Enoyl-CoA hydratase/isomerase JM952_13670 PF00730 HhH-GPD superfamily base excision DNA repair protein JM952_13670 PF00633 Helix-hairpin-helix motif JM952_13670 PF10576 Iron-sulfur binding domain of endonuclease III JM952_13675 PF00916 Sulfate permease family JM952_13675 PF01740 STAS domain JM952_13680 PF00484 Carbonic anhydrase JM952_13695 PF12849 PBP superfamily domain JM952_13700 PF12849 PBP superfamily domain JM952_13705 PF00528 Binding-protein-dependent transport system inner membrane component JM952_13710 PF00528 Binding-protein-dependent transport system inner membrane component JM952_13715 PF00005 ABC transporter JM952_13720 PF01895 PhoU domain JM952_13730 PF00929 Exonuclease JM952_13740 PF08032 RNA 2'-O ribose methyltransferase substrate binding JM952_13740 PF00588 SpoU rRNA Methylase family JM952_13755 PF00575 S1 RNA binding domain JM952_13755 PF17876 Cold shock domain JM952_13755 PF00773 RNB domain JM952_13755 PF08206 Ribonuclease B OB domain JM952_13755 PF08461 Ribonuclease R winged-helix domain JM952_13770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JM952_13770 PF02770 Acyl-CoA dehydrogenase, middle domain JM952_13770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JM952_13775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JM952_13775 PF02770 Acyl-CoA dehydrogenase, middle domain JM952_13775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JM952_13780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JM952_13780 PF02770 Acyl-CoA dehydrogenase, middle domain JM952_13780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JM952_13785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JM952_13785 PF02770 Acyl-CoA dehydrogenase, middle domain JM952_13785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JM952_13790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JM952_13790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JM952_13790 PF02770 Acyl-CoA dehydrogenase, middle domain JM952_13795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JM952_13795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JM952_13795 PF02770 Acyl-CoA dehydrogenase, middle domain JM952_13805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JM952_13805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JM952_13805 PF02770 Acyl-CoA dehydrogenase, middle domain JM952_13810 PF01209 ubiE/COQ5 methyltransferase family JM952_13815 PF00809 Pterin binding enzyme JM952_13815 PF02574 Homocysteine S-methyltransferase JM952_13820 PF00809 Pterin binding enzyme JM952_13820 PF02574 Homocysteine S-methyltransferase JM952_13820 PF02965 Vitamin B12 dependent methionine synthase, activation domain JM952_13820 PF02607 B12 binding domain JM952_13820 PF02310 B12 binding domain JM952_13830 PF00294 pfkB family carbohydrate kinase JM952_13835 PF07690 Major Facilitator Superfamily JM952_13840 PF00356 Bacterial regulatory proteins, lacI family JM952_13860 PF04102 SlyX JM952_13865 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JM952_13865 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JM952_13865 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JM952_13870 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JM952_13870 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JM952_13875 PF00255 Glutathione peroxidase JM952_13885 PF00392 Bacterial regulatory proteins, gntR family JM952_13890 PF00005 ABC transporter JM952_13915 PF10415 Fumarase C C-terminus JM952_13915 PF00206 Lyase JM952_13925 PF08328 Adenylosuccinate lyase C-terminal JM952_13925 PF00206 Lyase JM952_13935 PF08007 Cupin superfamily protein JM952_13945 PF16078 2-oxoglutarate dehydrogenase N-terminus JM952_13945 PF00676 Dehydrogenase E1 component JM952_13945 PF16870 2-oxoglutarate dehydrogenase C-terminal JM952_13945 PF02779 Transketolase, pyrimidine binding domain JM952_13950 PF00364 Biotin-requiring enzyme JM952_13950 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JM952_13950 PF02817 e3 binding domain JM952_13955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JM952_13955 PF07992 Pyridine nucleotide-disulphide oxidoreductase JM952_13960 PF03641 Possible lysine decarboxylase JM952_13965 PF01205 Uncharacterized protein family UPF0029 JM952_13970 PF00005 ABC transporter JM952_13970 PF00664 ABC transporter transmembrane region JM952_13975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_13975 PF03466 LysR substrate binding domain JM952_13980 PF00664 ABC transporter transmembrane region JM952_13980 PF00005 ABC transporter JM952_13980 PF03412 Peptidase C39 family JM952_14005 PF08543 Phosphomethylpyrimidine kinase JM952_14015 PF01556 DnaJ C terminal domain JM952_14015 PF00684 DnaJ central domain JM952_14015 PF00226 DnaJ domain JM952_14020 PF00012 Hsp70 protein JM952_14025 PF01025 GrpE JM952_14030 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding JM952_14030 PF01628 HrcA protein C terminal domain JM952_14035 PF02463 RecF/RecN/SMC N terminal domain JM952_14040 PF01475 Ferric uptake regulator family JM952_14045 PF04355 SmpA / OmlA family JM952_14050 PF03658 RnfH family Ubiquitin JM952_14060 PF01668 SmpB protein JM952_14065 PF00082 Subtilase family JM952_14170 PF05598 Transposase domain (DUF772) JM952_14170 PF01609 Transposase DDE domain JM952_14220 PF00990 Diguanylate cyclase, GGDEF domain JM952_14230 PF00990 Diguanylate cyclase, GGDEF domain JM952_14235 PF02321 Outer membrane efflux protein JM952_14245 PF00873 AcrB/AcrD/AcrF family JM952_14250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JM952_14250 PF00529 HlyD membrane-fusion protein of T1SS JM952_14260 PF03466 LysR substrate binding domain JM952_14260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_14265 PF05736 OprF membrane domain JM952_14265 PF00691 OmpA family JM952_14270 PF03441 FAD binding domain of DNA photolyase JM952_14270 PF00875 DNA photolyase JM952_14275 PF03796 DnaB-like helicase C terminal domain JM952_14275 PF00772 DnaB-like helicase N terminal domain JM952_14280 PF03358 NADPH-dependent FMN reductase JM952_14285 PF00733 Asparagine synthase JM952_14285 PF13537 Glutamine amidotransferase domain JM952_14290 PF00043 Glutathione S-transferase, C-terminal domain JM952_14290 PF02798 Glutathione S-transferase, N-terminal domain JM952_14300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JM952_14300 PF02770 Acyl-CoA dehydrogenase, middle domain JM952_14300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JM952_14315 PF01026 TatD related DNase JM952_14320 PF00899 ThiF family JM952_14335 PF00313 'Cold-shock' DNA-binding domain JM952_14345 PF02253 Phospholipase A1 JM952_14350 PF00484 Carbonic anhydrase JM952_14365 PF05681 Fumarate hydratase (Fumerase) JM952_14365 PF05683 Fumarase C-terminus JM952_14370 PF00005 ABC transporter JM952_14375 PF00175 Oxidoreductase NAD-binding domain JM952_14375 PF00970 Oxidoreductase FAD-binding domain JM952_14380 PF00255 Glutathione peroxidase JM952_14385 PF01432 Peptidase family M3 JM952_14420 PF00854 POT family JM952_14430 PF14310 Fibronectin type III-like domain JM952_14430 PF01915 Glycosyl hydrolase family 3 C-terminal domain JM952_14430 PF00933 Glycosyl hydrolase family 3 N terminal domain JM952_14450 PF07690 Major Facilitator Superfamily JM952_14455 PF00529 HlyD membrane-fusion protein of T1SS JM952_14455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JM952_14460 PF02321 Outer membrane efflux protein JM952_14475 PF03989 DNA gyrase C-terminal domain, beta-propeller JM952_14475 PF00521 DNA gyrase/topoisomerase IV, subunit A JM952_14480 PF05724 Thiopurine S-methyltransferase (TPMT) JM952_14485 PF00210 Ferritin-like domain JM952_14490 PF01804 Penicillin amidase JM952_14495 PF00593 TonB dependent receptor JM952_14495 PF07715 TonB-dependent Receptor Plug Domain JM952_14505 PF00733 Asparagine synthase JM952_14505 PF13537 Glutamine amidotransferase domain JM952_14515 PF01546 Peptidase family M20/M25/M40 JM952_14515 PF07687 Peptidase dimerisation domain JM952_14520 PF03960 ArsC family JM952_14530 PF14602 Hexapeptide repeat of succinyl-transferase JM952_14530 PF00132 Bacterial transferase hexapeptide (six repeats) JM952_14530 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal JM952_14535 PF08335 GlnD PII-uridylyltransferase JM952_14535 PF01909 Nucleotidyltransferase domain JM952_14535 PF01966 HD domain JM952_14540 PF00557 Metallopeptidase family M24 JM952_14560 PF05229 Spore Coat Protein U domain JM952_14575 PF00318 Ribosomal protein S2 JM952_14580 PF00889 Elongation factor TS JM952_14585 PF00990 Diguanylate cyclase, GGDEF domain JM952_14585 PF00072 Response regulator receiver domain JM952_14590 PF00696 Amino acid kinase family JM952_14595 PF01765 Ribosome recycling factor JM952_14600 PF01255 Putative undecaprenyl diphosphate synthase JM952_14610 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JM952_14610 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JM952_14610 PF13288 DXP reductoisomerase C-terminal domain JM952_14615 PF17820 PDZ domain JM952_14615 PF02163 Peptidase family M50 JM952_14620 PF01103 Surface antigen JM952_14620 PF07244 Surface antigen variable number repeat JM952_14630 PF00132 Bacterial transferase hexapeptide (six repeats) JM952_14630 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JM952_14635 PF07977 FabA-like domain JM952_14640 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JM952_14640 PF00132 Bacterial transferase hexapeptide (six repeats) JM952_14645 PF02684 Lipid-A-disaccharide synthetase JM952_14650 PF01351 Ribonuclease HII JM952_14655 PF07733 Bacterial DNA polymerase III alpha NTPase domain JM952_14655 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JM952_14655 PF14579 Helix-hairpin-helix motif JM952_14655 PF02811 PHP domain JM952_14655 PF01336 OB-fold nucleic acid binding domain JM952_14660 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JM952_14670 PF03653 Uncharacterised protein family (UPF0093) JM952_14690 PF03551 Transcriptional regulator PadR-like family JM952_14715 PF02592 Putative vitamin uptake transporter JM952_14725 PF02574 Homocysteine S-methyltransferase JM952_14730 PF00324 Amino acid permease JM952_14735 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JM952_14745 PF07715 TonB-dependent Receptor Plug Domain JM952_14745 PF00593 TonB dependent receptor JM952_14750 PF09334 tRNA synthetases class I (M) JM952_14750 PF01588 Putative tRNA binding domain JM952_14760 PF04060 Putative Fe-S cluster JM952_14775 PF04542 Sigma-70 region 2 JM952_14775 PF04545 Sigma-70, region 4 JM952_14820 PF01042 Endoribonuclease L-PSP JM952_14830 PF03706 Lysylphosphatidylglycerol synthase TM region JM952_14830 PF09924 Uncharacterised conserved protein (DUF2156) JM952_14865 PF07690 Major Facilitator Superfamily JM952_14870 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JM952_14895 PF03831 PhnA domain JM952_14895 PF08274 PhnA Zinc-Ribbon JM952_14905 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JM952_14930 PF08281 Sigma-70, region 4 JM952_14930 PF04542 Sigma-70 region 2 JM952_14955 PF01258 Prokaryotic dksA/traR C4-type zinc finger JM952_14965 PF07043 Protein of unknown function (DUF1328) JM952_14970 PF01863 Protein of unknown function DUF45 JM952_14975 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JM952_14975 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JM952_14985 PF02803 Thiolase, C-terminal domain JM952_14985 PF00108 Thiolase, N-terminal domain JM952_15000 PF00072 Response regulator receiver domain JM952_15000 PF00990 Diguanylate cyclase, GGDEF domain JM952_15020 PF04679 ATP dependent DNA ligase C terminal region JM952_15020 PF01068 ATP dependent DNA ligase domain JM952_15020 PF04675 DNA ligase N terminus JM952_15030 PF04675 DNA ligase N terminus JM952_15030 PF01068 ATP dependent DNA ligase domain JM952_15030 PF04679 ATP dependent DNA ligase C terminal region JM952_15035 PF00270 DEAD/DEAH box helicase JM952_15035 PF08494 DEAD/H associated JM952_15035 PF00271 Helicase conserved C-terminal domain JM952_15045 PF01494 FAD binding domain JM952_15050 PF00313 'Cold-shock' DNA-binding domain JM952_15055 PF01048 Phosphorylase superfamily JM952_15060 PF00156 Phosphoribosyl transferase domain JM952_15065 PF00933 Glycosyl hydrolase family 3 N terminal domain JM952_15070 PF04244 Deoxyribodipyrimidine photo-lyase-related protein JM952_15075 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JM952_15075 PF01266 FAD dependent oxidoreductase JM952_15080 PF01323 DSBA-like thioredoxin domain JM952_15085 PF01928 CYTH domain JM952_15095 PF05958 tRNA (Uracil-5-)-methyltransferase JM952_15100 PF00072 Response regulator receiver domain JM952_15100 PF00486 Transcriptional regulatory protein, C terminal JM952_15105 PF11967 Recombination protein O N terminal JM952_15105 PF02565 Recombination protein O C terminal JM952_15110 PF01926 50S ribosome-binding GTPase JM952_15110 PF07650 KH domain JM952_15115 PF00035 Double-stranded RNA binding motif JM952_15115 PF14622 Ribonuclease-III-like JM952_15125 PF10502 Signal peptidase, peptidase S26 JM952_15130 PF03144 Elongation factor Tu domain 2 JM952_15130 PF06421 GTP-binding protein LepA C-terminus JM952_15130 PF00009 Elongation factor Tu GTP binding domain JM952_15130 PF00679 Elongation factor G C-terminus JM952_15135 PF13180 PDZ domain JM952_15145 PF04542 Sigma-70 region 2 JM952_15145 PF08281 Sigma-70, region 4 JM952_15150 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JM952_15150 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JM952_15150 PF00378 Enoyl-CoA hydratase/isomerase JM952_15155 PF01545 Cation efflux family JM952_15160 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JM952_15160 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JM952_15165 PF00378 Enoyl-CoA hydratase/isomerase JM952_15170 PF00378 Enoyl-CoA hydratase/isomerase JM952_15175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JM952_15175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JM952_15175 PF02770 Acyl-CoA dehydrogenase, middle domain JM952_15180 PF00171 Aldehyde dehydrogenase family JM952_15185 PF01381 Helix-turn-helix JM952_15185 PF09856 Predicted transcriptional regulator (DUF2083) JM952_15185 PF06114 IrrE N-terminal-like domain JM952_15195 PF07745 Glycosyl hydrolase family 53 JM952_15200 PF02837 Glycosyl hydrolases family 2, sugar binding domain JM952_15200 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JM952_15200 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 JM952_15200 PF16355 Domain of unknown function (DUF4982) JM952_15200 PF00703 Glycosyl hydrolases family 2 JM952_15230 PF00933 Glycosyl hydrolase family 3 N terminal domain JM952_15230 PF01915 Glycosyl hydrolase family 3 C-terminal domain JM952_15230 PF14310 Fibronectin type III-like domain JM952_15255 PF01527 Transposase JM952_15275 PF01464 Transglycosylase SLT domain JM952_15285 PF03958 Bacterial type II/III secretion system short domain JM952_15285 PF00263 Bacterial type II and III secretion system protein JM952_15300 PF18269 T3SS EscN ATPase C-terminal domain JM952_15300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JM952_15300 PF02874 ATP synthase alpha/beta family, beta-barrel domain JM952_15315 PF01514 Secretory protein of YscJ/FliF family JM952_15330 PF01312 FlhB HrpN YscU SpaS Family JM952_15335 PF00771 FHIPEP family JM952_15350 PF00813 FliP family JM952_15355 PF01313 Bacterial export proteins, family 3 JM952_15385 PF03211 Pectate lyase JM952_15395 PF05819 NolX protein JM952_15405 PF00440 Bacterial regulatory proteins, tetR family JM952_15410 PF00155 Aminotransferase class I and II JM952_15420 PF00266 Aminotransferase class-V JM952_15430 PF03301 Tryptophan 2,3-dioxygenase JM952_15435 PF03301 Tryptophan 2,3-dioxygenase JM952_15515 PF04002 RadC-like JAB domain JM952_15575 PF00092 von Willebrand factor type A domain JM952_15610 PF05190 MutS family domain IV JM952_15610 PF05192 MutS domain III JM952_15610 PF05188 MutS domain II JM952_15610 PF01624 MutS domain I JM952_15610 PF00488 MutS domain V JM952_15620 PF00141 Peroxidase JM952_15625 PF01479 S4 domain JM952_15630 PF01554 MatE JM952_15635 PF01245 Ribosomal protein L19 JM952_15640 PF01746 tRNA (Guanine-1)-methyltransferase JM952_15645 PF05239 PRC-barrel domain JM952_15645 PF01782 RimM N-terminal domain JM952_15650 PF00886 Ribosomal protein S16 JM952_15660 PF03060 Nitronate monooxygenase JM952_15665 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) JM952_15675 PF02978 Signal peptide binding domain JM952_15675 PF02881 SRP54-type protein, helical bundle domain JM952_15675 PF00448 SRP54-type protein, GTPase domain JM952_15680 PF01578 Cytochrome C assembly protein JM952_15685 PF01263 Aldose 1-epimerase JM952_15690 PF06964 Alpha-L-arabinofuranosidase C-terminal domain JM952_15695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_15695 PF03466 LysR substrate binding domain JM952_15715 PF00072 Response regulator receiver domain JM952_15720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_15720 PF13426 PAS domain JM952_15720 PF00072 Response regulator receiver domain JM952_15725 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JM952_15725 PF01627 Hpt domain JM952_15725 PF00512 His Kinase A (phospho-acceptor) domain JM952_15725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_15725 PF00672 HAMP domain JM952_15725 PF00072 Response regulator receiver domain JM952_15730 PF01739 CheR methyltransferase, SAM binding domain JM952_15730 PF03705 CheR methyltransferase, all-alpha domain JM952_15735 PF01339 CheB methylesterase JM952_15740 PF13493 Domain of unknown function (DUF4118) JM952_15740 PF13492 GAF domain JM952_15740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_15740 PF00512 His Kinase A (phospho-acceptor) domain JM952_15740 PF02702 Osmosensitive K+ channel His kinase sensor domain JM952_15745 PF07237 Protein of unknown function (DUF1428) JM952_15750 PF00085 Thioredoxin JM952_15755 PF00593 TonB dependent receptor JM952_15755 PF07715 TonB-dependent Receptor Plug Domain JM952_15760 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain JM952_15760 PF04616 Glycosyl hydrolases family 43 JM952_15765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_15765 PF13188 PAS domain JM952_15765 PF08448 PAS fold JM952_15765 PF00072 Response regulator receiver domain JM952_15765 PF00512 His Kinase A (phospho-acceptor) domain JM952_15770 PF00072 Response regulator receiver domain JM952_15770 PF00672 HAMP domain JM952_15770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_15770 PF00512 His Kinase A (phospho-acceptor) domain JM952_15770 PF01627 Hpt domain JM952_15770 PF17149 Periplasmic sensor domain found in signal transduction proteins JM952_15780 PF13581 Histidine kinase-like ATPase domain JM952_15785 PF01740 STAS domain JM952_15790 PF08678 Rsbr N terminal JM952_15790 PF01740 STAS domain JM952_15795 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JM952_15805 PF00183 Hsp90 protein JM952_15805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_15810 PF12833 Helix-turn-helix domain JM952_15825 PF05656 Protein of unknown function (DUF805) JM952_15830 PF18073 Rubredoxin metal binding domain JM952_15840 PF03626 Prokaryotic Cytochrome C oxidase subunit IV JM952_15845 PF00510 Cytochrome c oxidase subunit III JM952_15850 PF00115 Cytochrome C and Quinol oxidase polypeptide I JM952_15855 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JM952_15855 PF06481 COX Aromatic Rich Motif JM952_15865 PF02401 LytB protein JM952_15870 PF01252 Signal peptidase (SPase) II JM952_15875 PF00133 tRNA synthetases class I (I, L, M and V) JM952_15875 PF06827 Zinc finger found in FPG and IleRS JM952_15875 PF08264 Anticodon-binding domain of tRNA JM952_15880 PF06574 FAD synthetase JM952_15880 PF01687 Riboflavin kinase JM952_15885 PF03023 Lipid II flippase MurJ JM952_15890 PF01649 Ribosomal protein S20 JM952_15895 PF01018 GTP1/OBG JM952_15895 PF01926 50S ribosome-binding GTPase JM952_15900 PF01016 Ribosomal L27 protein JM952_15905 PF00829 Ribosomal prokaryotic L21 protein JM952_15910 PF00005 ABC transporter JM952_15910 PF17755 UvrA DNA-binding domain JM952_15910 PF17760 UvrA interaction domain JM952_15920 PF00378 Enoyl-CoA hydratase/isomerase JM952_15940 PF04542 Sigma-70 region 2 JM952_15940 PF08281 Sigma-70, region 4 JM952_15950 PF04377 Arginine-tRNA-protein transferase, C terminus JM952_15950 PF04376 Arginine-tRNA-protein transferase, N terminus JM952_15970 PF02222 ATP-grasp domain JM952_15970 PF01370 NAD dependent epimerase/dehydratase family JM952_16000 PF00730 HhH-GPD superfamily base excision DNA repair protein JM952_16025 PF00072 Response regulator receiver domain JM952_16025 PF00196 Bacterial regulatory proteins, luxR family JM952_16030 PF07730 Histidine kinase JM952_16040 PF03775 Septum formation inhibitor MinC, C-terminal domain JM952_16040 PF05209 Septum formation inhibitor MinC, N-terminal domain JM952_16045 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JM952_16050 PF03776 Septum formation topological specificity factor MinE JM952_16060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_16060 PF00512 His Kinase A (phospho-acceptor) domain JM952_16065 PF00072 Response regulator receiver domain JM952_16065 PF00486 Transcriptional regulatory protein, C terminal JM952_16080 PF00884 Sulfatase JM952_16080 PF08019 Phosphoethanolamine transferase EptA/EptB JM952_16100 PF07690 Major Facilitator Superfamily JM952_16105 PF02347 Glycine cleavage system P-protein JM952_16120 PF00248 Aldo/keto reductase family JM952_16125 PF00199 Catalase JM952_16125 PF06628 Catalase-related immune-responsive JM952_16125 PF18011 C-terminal domain found in long catalases JM952_16140 PF12833 Helix-turn-helix domain JM952_16140 PF02311 AraC-like ligand binding domain JM952_16160 PF00326 Prolyl oligopeptidase family JM952_16160 PF07676 WD40-like Beta Propeller Repeat JM952_16160 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region JM952_16170 PF03169 OPT oligopeptide transporter protein JM952_16180 PF02811 PHP domain JM952_16180 PF14579 Helix-hairpin-helix motif JM952_16180 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JM952_16180 PF07733 Bacterial DNA polymerase III alpha NTPase domain JM952_16195 PF00717 Peptidase S24-like JM952_16195 PF01726 LexA DNA binding domain JM952_16225 PF01799 [2Fe-2S] binding domain JM952_16225 PF10518 TAT (twin-arginine translocation) pathway signal sequence JM952_16225 PF00111 2Fe-2S iron-sulfur cluster binding domain JM952_16230 PF03450 CO dehydrogenase flavoprotein C-terminal domain JM952_16230 PF00941 FAD binding domain in molybdopterin dehydrogenase JM952_16235 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JM952_16235 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JM952_16240 PF01915 Glycosyl hydrolase family 3 C-terminal domain JM952_16240 PF00933 Glycosyl hydrolase family 3 N terminal domain JM952_16240 PF14310 Fibronectin type III-like domain JM952_16250 PF17755 UvrA DNA-binding domain JM952_16270 PF07992 Pyridine nucleotide-disulphide oxidoreductase JM952_16280 PF00106 short chain dehydrogenase JM952_16285 PF17678 Glycosyl hydrolase family 92 N-terminal domain JM952_16285 PF07971 Glycosyl hydrolase family 92 JM952_16300 PF00723 Glycosyl hydrolases family 15 JM952_16315 PF01256 Carbohydrate kinase JM952_16320 PF13456 Reverse transcriptase-like JM952_16320 PF00300 Histidine phosphatase superfamily (branch 1) JM952_16350 PF12008 Type I restriction and modification enzyme - subunit R C terminal JM952_16350 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JM952_16350 PF18766 SWI2/SNF2 ATPase JM952_16365 PF02384 N-6 DNA Methylase JM952_16365 PF12161 HsdM N-terminal domain JM952_16415 PF01433 Peptidase family M1 domain JM952_16415 PF11838 ERAP1-like C-terminal domain JM952_16420 PF00709 Adenylosuccinate synthetase JM952_16430 PF01145 SPFH domain / Band 7 family JM952_16435 PF12221 Bacterial membrane protein N terminal JM952_16435 PF01145 SPFH domain / Band 7 family JM952_16440 PF00072 Response regulator receiver domain JM952_16445 PF01556 DnaJ C terminal domain JM952_16445 PF00226 DnaJ domain JM952_16450 PF00011 Hsp20/alpha crystallin family JM952_16455 PF08534 Redoxin JM952_16465 PF06832 Penicillin-Binding Protein C-terminus Family JM952_16465 PF00912 Transglycosylase JM952_16465 PF00905 Penicillin binding protein transpeptidase domain JM952_16490 PF01835 MG2 domain JM952_16490 PF17962 Bacterial macroglobulin domain 6 JM952_16490 PF11974 Bacterial alpha-2-macroglobulin MG3 domain JM952_16490 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain JM952_16490 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain JM952_16490 PF07703 Alpha-2-macroglobulin bait region domain JM952_16490 PF00207 Alpha-2-macroglobulin family JM952_16490 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain JM952_16500 PF07715 TonB-dependent Receptor Plug Domain JM952_16500 PF00593 TonB dependent receptor JM952_16505 PF04303 PrpF protein JM952_16515 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH JM952_16520 PF00330 Aconitase family (aconitate hydratase) JM952_16520 PF00694 Aconitase C-terminal domain JM952_16525 PF00285 Citrate synthase, C-terminal domain JM952_16535 PF02954 Bacterial regulatory protein, Fis family JM952_16535 PF06506 Propionate catabolism activator JM952_16535 PF00158 Sigma-54 interaction domain JM952_16635 PF09115 DNA polymerase III, delta subunit, C terminal JM952_16640 PF02618 YceG-like family JM952_16645 PF04715 Anthranilate synthase component I, N terminal region JM952_16645 PF00425 chorismate binding enzyme JM952_16650 PF00109 Beta-ketoacyl synthase, N-terminal domain JM952_16650 PF02801 Beta-ketoacyl synthase, C-terminal domain JM952_16655 PF00550 Phosphopantetheine attachment site JM952_16665 PF00698 Acyl transferase domain JM952_16670 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JM952_16670 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JM952_16675 PF01783 Ribosomal L32p protein family JM952_16680 PF02620 Large ribosomal RNA subunit accumulation protein YceD JM952_16685 PF02545 Maf-like protein JM952_16710 PF07726 ATPase family associated with various cellular activities (AAA) JM952_16710 PF17863 AAA lid domain JM952_16720 PF13559 Domain of unknown function (DUF4129) JM952_16720 PF01841 Transglutaminase-like superfamily JM952_16720 PF11992 Domain of unknown function (DUF3488) JM952_16730 PF01230 HIT domain JM952_16735 PF02132 RecR protein JM952_16735 PF13662 Toprim domain JM952_16740 PF02575 YbaB/EbfC DNA-binding family JM952_16745 PF12170 DNA polymerase III tau subunit V interacting with alpha JM952_16745 PF12169 DNA polymerase III subunits gamma and tau domain III JM952_16745 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JM952_16760 PF02391 MoaE protein JM952_16765 PF02597 ThiS family JM952_16770 PF01967 MoaC family JM952_16780 PF06463 Molybdenum Cofactor Synthesis C JM952_16780 PF04055 Radical SAM superfamily JM952_16785 PF00753 Metallo-beta-lactamase superfamily JM952_16785 PF12706 Beta-lactamase superfamily domain JM952_16795 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JM952_16815 PF00929 Exonuclease JM952_16820 PF00075 RNase H JM952_16830 PF16123 Hydroxyacylglutathione hydrolase C-terminus JM952_16830 PF00753 Metallo-beta-lactamase superfamily JM952_16835 PF05257 CHAP domain JM952_16835 PF01476 LysM domain JM952_16860 PF00216 Bacterial DNA-binding protein JM952_16865 PF05362 Lon protease (S16) C-terminal proteolytic domain JM952_16865 PF00004 ATPase family associated with various cellular activities (AAA) JM952_16865 PF02190 ATP-dependent protease La (LON) substrate-binding domain JM952_16870 PF06689 ClpX C4-type zinc finger JM952_16870 PF10431 C-terminal, D2-small domain, of ClpB protein JM952_16870 PF07724 AAA domain (Cdc48 subfamily) JM952_16875 PF00574 Clp protease JM952_16880 PF05698 Bacterial trigger factor protein (TF) C-terminus JM952_16880 PF05697 Bacterial trigger factor protein (TF) JM952_16915 PF00180 Isocitrate/isopropylmalate dehydrogenase JM952_16915 PF18324 Hypothetical protein TT1725 JM952_16925 PF00462 Glutaredoxin JM952_16930 PF01435 Peptidase family M48 JM952_16930 PF13181 Tetratricopeptide repeat JM952_16935 PF00486 Transcriptional regulatory protein, C terminal JM952_16935 PF00072 Response regulator receiver domain JM952_16940 PF11808 Phosphate regulon sensor protein PhoR JM952_16940 PF00989 PAS fold JM952_16940 PF00512 His Kinase A (phospho-acceptor) domain JM952_16940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_16945 PF02503 Polyphosphate kinase middle domain JM952_16945 PF17941 Polyphosphate kinase C-terminal domain 1 JM952_16945 PF13090 Polyphosphate kinase C-terminal domain 2 JM952_16945 PF13089 Polyphosphate kinase N-terminal domain JM952_16950 PF02541 Ppx/GppA phosphatase family JM952_16955 PF13439 Glycosyltransferase Family 4 JM952_16955 PF00534 Glycosyl transferases group 1 JM952_16960 PF01569 PAP2 superfamily JM952_16965 PF00149 Calcineurin-like phosphoesterase JM952_16980 PF04305 Protein of unknown function (DUF455) JM952_16985 PF00156 Phosphoribosyl transferase domain JM952_17000 PF02875 Mur ligase family, glutamate ligase domain JM952_17000 PF08245 Mur ligase middle domain JM952_17015 PF00300 Histidine phosphatase superfamily (branch 1) JM952_17020 PF05506 Domain of unknown function (DUF756) JM952_17020 PF04185 Phosphoesterase family JM952_17030 PF00107 Zinc-binding dehydrogenase JM952_17030 PF08240 Alcohol dehydrogenase GroES-like domain JM952_17040 PF00005 ABC transporter JM952_17040 PF12857 TOBE-like domain JM952_17045 PF00528 Binding-protein-dependent transport system inner membrane component JM952_17050 PF00528 Binding-protein-dependent transport system inner membrane component JM952_17060 PF00155 Aminotransferase class I and II JM952_17070 PF00849 RNA pseudouridylate synthase JM952_17080 PF00691 OmpA family JM952_17080 PF05736 OprF membrane domain JM952_17085 PF08240 Alcohol dehydrogenase GroES-like domain JM952_17085 PF00107 Zinc-binding dehydrogenase JM952_17090 PF07992 Pyridine nucleotide-disulphide oxidoreductase JM952_17090 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JM952_17110 PF02798 Glutathione S-transferase, N-terminal domain JM952_17110 PF00043 Glutathione S-transferase, C-terminal domain JM952_17115 PF00056 lactate/malate dehydrogenase, NAD binding domain JM952_17115 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JM952_17120 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JM952_17125 PF00009 Elongation factor Tu GTP binding domain JM952_17125 PF00679 Elongation factor G C-terminus JM952_17125 PF03144 Elongation factor Tu domain 2 JM952_17135 PF01425 Amidase JM952_17150 PF01474 Class-II DAHP synthetase family JM952_17155 PF02600 Disulfide bond formation protein DsbB JM952_17160 PF01196 Ribosomal protein L17 JM952_17165 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JM952_17165 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JM952_17165 PF01000 RNA polymerase Rpb3/RpoA insert domain JM952_17170 PF01479 S4 domain JM952_17170 PF00163 Ribosomal protein S4/S9 N-terminal domain JM952_17175 PF00411 Ribosomal protein S11 JM952_17180 PF00416 Ribosomal protein S13/S18 JM952_17185 PF00344 SecY translocase JM952_17190 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JM952_17195 PF00327 Ribosomal protein L30p/L7e JM952_17200 PF03719 Ribosomal protein S5, C-terminal domain JM952_17200 PF00333 Ribosomal protein S5, N-terminal domain JM952_17205 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JM952_17210 PF00347 Ribosomal protein L6 JM952_17215 PF00410 Ribosomal protein S8 JM952_17220 PF00253 Ribosomal protein S14p/S29e JM952_17225 PF00281 Ribosomal protein L5 JM952_17225 PF00673 ribosomal L5P family C-terminus JM952_17230 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JM952_17230 PF00467 KOW motif JM952_17235 PF00238 Ribosomal protein L14p/L23e JM952_17240 PF00366 Ribosomal protein S17 JM952_17245 PF00831 Ribosomal L29 protein JM952_17250 PF00252 Ribosomal protein L16p/L10e JM952_17255 PF00189 Ribosomal protein S3, C-terminal domain JM952_17255 PF07650 KH domain JM952_17260 PF00237 Ribosomal protein L22p/L17e JM952_17265 PF00203 Ribosomal protein S19 JM952_17270 PF00181 Ribosomal Proteins L2, RNA binding domain JM952_17270 PF03947 Ribosomal Proteins L2, C-terminal domain JM952_17275 PF00276 Ribosomal protein L23 JM952_17280 PF00573 Ribosomal protein L4/L1 family JM952_17285 PF00297 Ribosomal protein L3 JM952_17290 PF00338 Ribosomal protein S10p/S20e JM952_17295 PF00009 Elongation factor Tu GTP binding domain JM952_17295 PF03144 Elongation factor Tu domain 2 JM952_17295 PF03143 Elongation factor Tu C-terminal domain JM952_17300 PF00679 Elongation factor G C-terminus JM952_17300 PF14492 Elongation Factor G, domain II JM952_17300 PF00009 Elongation factor Tu GTP binding domain JM952_17300 PF03764 Elongation factor G, domain IV JM952_17300 PF03144 Elongation factor Tu domain 2 JM952_17305 PF00177 Ribosomal protein S7p/S5e JM952_17310 PF00164 Ribosomal protein S12/S23 JM952_17315 PF05000 RNA polymerase Rpb1, domain 4 JM952_17315 PF04998 RNA polymerase Rpb1, domain 5 JM952_17315 PF00623 RNA polymerase Rpb1, domain 2 JM952_17315 PF04997 RNA polymerase Rpb1, domain 1 JM952_17315 PF04983 RNA polymerase Rpb1, domain 3 JM952_17320 PF04560 RNA polymerase Rpb2, domain 7 JM952_17320 PF04563 RNA polymerase beta subunit JM952_17320 PF04561 RNA polymerase Rpb2, domain 2 JM952_17320 PF04565 RNA polymerase Rpb2, domain 3 JM952_17320 PF10385 RNA polymerase beta subunit external 1 domain JM952_17320 PF00562 RNA polymerase Rpb2, domain 6 JM952_17325 PF16320 Ribosomal protein L7/L12 dimerisation domain JM952_17325 PF00542 Ribosomal protein L7/L12 C-terminal domain JM952_17330 PF00466 Ribosomal protein L10 JM952_17335 PF00687 Ribosomal protein L1p/L10e family JM952_17340 PF00298 Ribosomal protein L11, RNA binding domain JM952_17340 PF03946 Ribosomal protein L11, N-terminal domain JM952_17345 PF00467 KOW motif JM952_17345 PF02357 Transcription termination factor nusG JM952_17350 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JM952_17360 PF03144 Elongation factor Tu domain 2 JM952_17360 PF03143 Elongation factor Tu C-terminal domain JM952_17360 PF00009 Elongation factor Tu GTP binding domain JM952_17380 PF01926 50S ribosome-binding GTPase JM952_17380 PF06071 Protein of unknown function (DUF933) JM952_17385 PF01195 Peptidyl-tRNA hydrolase JM952_17390 PF14693 Ribosomal protein TL5, C-terminal domain JM952_17390 PF01386 Ribosomal L25p family JM952_17395 PF14572 Phosphoribosyl synthetase-associated domain JM952_17395 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JM952_17405 PF08544 GHMP kinases C terminal JM952_17405 PF00288 GHMP kinases N terminal domain JM952_17410 PF03550 Outer membrane lipoprotein LolB JM952_17420 PF01488 Shikimate / quinate 5-dehydrogenase JM952_17420 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JM952_17420 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JM952_17425 PF00472 RF-1 domain JM952_17425 PF03462 PCRF domain JM952_17435 PF00994 Probable molybdopterin binding domain JM952_17440 PF03976 Polyphosphate kinase 2 (PPK2) JM952_17450 PF00708 Acylphosphatase JM952_17455 PF08534 Redoxin JM952_17460 PF03631 Virulence factor BrkB JM952_17465 PF03358 NADPH-dependent FMN reductase JM952_17475 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain JM952_17475 PF17189 Glycosyl hydrolase family 30 beta sandwich domain JM952_17485 PF04073 Aminoacyl-tRNA editing domain JM952_17490 PF00082 Subtilase family JM952_17490 PF04151 Bacterial pre-peptidase C-terminal domain JM952_17500 PF00082 Subtilase family JM952_17500 PF04151 Bacterial pre-peptidase C-terminal domain JM952_17505 PF01063 Amino-transferase class IV JM952_17570 PF00881 Nitroreductase family JM952_17575 PF01367 5'-3' exonuclease, C-terminal SAM fold JM952_17575 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JM952_17575 PF00476 DNA polymerase family A JM952_17575 PF01612 3'-5' exonuclease JM952_17580 PF00293 NUDIX domain JM952_17590 PF00561 alpha/beta hydrolase fold JM952_17595 PF17827 PrmC N-terminal domain JM952_17595 PF05175 Methyltransferase small domain JM952_17600 PF10417 C-terminal domain of 1-Cys peroxiredoxin JM952_17600 PF00578 AhpC/TSA family JM952_17605 PF07992 Pyridine nucleotide-disulphide oxidoreductase JM952_17605 PF13192 Thioredoxin domain JM952_17610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_17610 PF03466 LysR substrate binding domain JM952_17615 PF01272 Transcription elongation factor, GreA/GreB, C-term JM952_17615 PF14760 Rnk N-terminus JM952_17620 PF00923 Transaldolase/Fructose-6-phosphate aldolase JM952_17630 PF01625 Peptide methionine sulfoxide reductase JM952_17640 PF00196 Bacterial regulatory proteins, luxR family JM952_17640 PF00072 Response regulator receiver domain JM952_17645 PF00072 Response regulator receiver domain JM952_17645 PF00512 His Kinase A (phospho-acceptor) domain JM952_17645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_17645 PF01627 Hpt domain JM952_17645 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JM952_17645 PF00672 HAMP domain JM952_17650 PF00072 Response regulator receiver domain JM952_17650 PF00990 Diguanylate cyclase, GGDEF domain JM952_17665 PF00749 tRNA synthetases class I (E and Q), catalytic domain JM952_17665 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JM952_17670 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JM952_17670 PF12833 Helix-turn-helix domain JM952_17675 PF00892 EamA-like transporter family JM952_17695 PF01728 FtsJ-like methyltransferase JM952_17695 PF18125 RlmM ferredoxin-like domain JM952_17700 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JM952_17700 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JM952_17705 PF08450 SMP-30/Gluconolactonase/LRE-like region JM952_17725 PF00378 Enoyl-CoA hydratase/isomerase JM952_17735 PF00501 AMP-binding enzyme JM952_17735 PF13193 AMP-binding enzyme C-terminal domain JM952_17740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_17740 PF03466 LysR substrate binding domain JM952_17745 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit JM952_17745 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JM952_17750 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JM952_17755 PF07729 FCD domain JM952_17755 PF00392 Bacterial regulatory proteins, gntR family JM952_17775 PF01494 FAD binding domain JM952_17780 PF01494 FAD binding domain JM952_17790 PF01923 Cobalamin adenosyltransferase JM952_17795 PF00850 Histone deacetylase domain JM952_17800 PF03968 OstA-like protein JM952_17800 PF04453 LPS transport system D JM952_17805 PF00639 PPIC-type PPIASE domain JM952_17805 PF09312 SurA N-terminal domain JM952_17810 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JM952_17820 PF00398 Ribosomal RNA adenine dimethylase JM952_17825 PF04379 ApaG domain JM952_17830 PF00149 Calcineurin-like phosphoesterase JM952_17835 PF00186 Dihydrofolate reductase JM952_17840 PF00303 Thymidylate synthase JM952_17845 PF01790 Prolipoprotein diacylglyceryl transferase JM952_17865 PF01219 Prokaryotic diacylglycerol kinase JM952_17875 PF08521 Two-component sensor kinase N-terminal JM952_17875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_17875 PF00512 His Kinase A (phospho-acceptor) domain JM952_17880 PF00072 Response regulator receiver domain JM952_17880 PF00486 Transcriptional regulatory protein, C terminal JM952_17885 PF13472 GDSL-like Lipase/Acylhydrolase family JM952_17890 PF00005 ABC transporter JM952_17900 PF02668 Taurine catabolism dioxygenase TauD, TfdA family JM952_17915 PF00528 Binding-protein-dependent transport system inner membrane component JM952_17935 PF07715 TonB-dependent Receptor Plug Domain JM952_17935 PF00593 TonB dependent receptor JM952_17945 PF00248 Aldo/keto reductase family JM952_17950 PF07670 Nucleoside recognition JM952_17950 PF07662 Na+ dependent nucleoside transporter C-terminus JM952_17950 PF01773 Na+ dependent nucleoside transporter N-terminus JM952_17955 PF00294 pfkB family carbohydrate kinase JM952_17955 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JM952_17960 PF01207 Dihydrouridine synthase (Dus) JM952_17970 PF02773 S-adenosylmethionine synthetase, C-terminal domain JM952_17970 PF02772 S-adenosylmethionine synthetase, central domain JM952_17970 PF00438 S-adenosylmethionine synthetase, N-terminal domain JM952_17980 PF00328 Histidine phosphatase superfamily (branch 2) JM952_17995 PF00691 OmpA family JM952_17995 PF01389 OmpA-like transmembrane domain JM952_18015 PF00311 Phosphoenolpyruvate carboxylase JM952_18025 PF05221 S-adenosyl-L-homocysteine hydrolase JM952_18025 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JM952_18055 PF00128 Alpha amylase, catalytic domain JM952_18080 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JM952_18095 PF14765 Polyketide synthase dehydratase JM952_18095 PF00550 Phosphopantetheine attachment site JM952_18095 PF02801 Beta-ketoacyl synthase, C-terminal domain JM952_18095 PF08659 KR domain JM952_18095 PF16197 Ketoacyl-synthetase C-terminal extension JM952_18095 PF00107 Zinc-binding dehydrogenase JM952_18095 PF08240 Alcohol dehydrogenase GroES-like domain JM952_18095 PF00109 Beta-ketoacyl synthase, N-terminal domain JM952_18095 PF00698 Acyl transferase domain JM952_18110 PF02219 Methylenetetrahydrofolate reductase JM952_18125 PF00293 NUDIX domain JM952_18135 PF07516 SecA Wing and Scaffold domain JM952_18135 PF07517 SecA DEAD-like domain JM952_18135 PF02810 SEC-C motif JM952_18135 PF01043 SecA preprotein cross-linking domain JM952_18140 PF01476 LysM domain JM952_18140 PF08525 Opacity-associated protein A N-terminal motif JM952_18140 PF01551 Peptidase family M23 JM952_18150 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JM952_18155 PF12327 FtsZ family, C-terminal domain JM952_18155 PF00091 Tubulin/FtsZ family, GTPase domain JM952_18160 PF02491 SHS2 domain inserted in FTSA JM952_18165 PF03799 Cell division protein FtsQ JM952_18165 PF08478 POTRA domain, FtsQ-type JM952_18170 PF07478 D-ala D-ala ligase C-terminus JM952_18170 PF01820 D-ala D-ala ligase N-terminus JM952_18175 PF01225 Mur ligase family, catalytic domain JM952_18175 PF02875 Mur ligase family, glutamate ligase domain JM952_18175 PF08245 Mur ligase middle domain JM952_18180 PF04101 Glycosyltransferase family 28 C-terminal domain JM952_18180 PF03033 Glycosyltransferase family 28 N-terminal domain JM952_18185 PF01098 Cell cycle protein JM952_18190 PF00953 Glycosyl transferase family 4 JM952_18195 PF01225 Mur ligase family, catalytic domain JM952_18195 PF02875 Mur ligase family, glutamate ligase domain JM952_18195 PF08245 Mur ligase middle domain JM952_18200 PF02875 Mur ligase family, glutamate ligase domain JM952_18200 PF08245 Mur ligase middle domain JM952_18200 PF01225 Mur ligase family, catalytic domain JM952_18205 PF03717 Penicillin-binding Protein dimerisation domain JM952_18205 PF00905 Penicillin binding protein transpeptidase domain JM952_18210 PF04999 Cell division protein FtsL JM952_18215 PF01795 MraW methylase family JM952_18220 PF02381 MraZ protein, putative antitoxin-like JM952_18245 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JM952_18255 PF02021 Uncharacterised protein family UPF0102 JM952_18260 PF04307 LexA-binding, inner membrane-associated putative hydrolase JM952_18265 PF01565 FAD binding domain JM952_18265 PF02913 FAD linked oxidases, C-terminal domain JM952_18275 PF00072 Response regulator receiver domain JM952_18275 PF00486 Transcriptional regulatory protein, C terminal JM952_18280 PF13493 Domain of unknown function (DUF4118) JM952_18280 PF13492 GAF domain JM952_18280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_18280 PF00512 His Kinase A (phospho-acceptor) domain JM952_18280 PF02702 Osmosensitive K+ channel His kinase sensor domain JM952_18285 PF02669 K+-transporting ATPase, c chain JM952_18295 PF03814 Potassium-transporting ATPase A subunit JM952_18310 PF02769 AIR synthase related protein, C-terminal domain JM952_18310 PF00586 AIR synthase related protein, N-terminal domain JM952_18315 PF01029 NusB family JM952_18320 PF00885 6,7-dimethyl-8-ribityllumazine synthase JM952_18325 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JM952_18325 PF00925 GTP cyclohydrolase II JM952_18330 PF00677 Lumazine binding domain JM952_18340 PF01872 RibD C-terminal domain JM952_18340 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JM952_18350 PF03477 ATP cone domain JM952_18355 PF00464 Serine hydroxymethyltransferase JM952_18365 PF12848 ABC transporter JM952_18365 PF00005 ABC transporter JM952_18370 PF01327 Polypeptide deformylase JM952_18375 PF03960 ArsC family JM952_18395 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JM952_18395 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JM952_18430 PF00593 TonB dependent receptor JM952_18430 PF07715 TonB-dependent Receptor Plug Domain JM952_18440 PF00392 Bacterial regulatory proteins, gntR family JM952_18440 PF07702 UTRA domain JM952_18455 PF03958 Bacterial type II/III secretion system short domain JM952_18455 PF00263 Bacterial type II and III secretion system protein JM952_18465 PF10741 Type II secretion system (T2SS), protein M subtype b JM952_18470 PF05137 Fimbrial assembly protein (PilN) JM952_18475 PF03934 Type II secretion system (T2SS), protein K JM952_18485 PF07963 Prokaryotic N-terminal methylation motif JM952_18490 PF12019 Type II transport protein GspH JM952_18495 PF08334 Type II secretion system (T2SS), protein G JM952_18500 PF00482 Type II secretion system (T2SS), protein F JM952_18505 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JM952_18505 PF00437 Type II/IV secretion system protein JM952_18510 PF04151 Bacterial pre-peptidase C-terminal domain JM952_18510 PF00082 Subtilase family JM952_18515 PF05658 Head domain of trimeric autotransporter adhesin JM952_18515 PF05662 Coiled stalk of trimeric autotransporter adhesin JM952_18515 PF13018 Extended Signal Peptide of Type V secretion system JM952_18515 PF03895 YadA-like membrane anchor domain JM952_18525 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JM952_18525 PF02769 AIR synthase related protein, C-terminal domain JM952_18525 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JM952_18530 PF10411 Disulfide bond isomerase protein N-terminus JM952_18530 PF13098 Thioredoxin-like domain JM952_18535 PF00589 Phage integrase family JM952_18535 PF02899 Phage integrase, N-terminal SAM-like domain JM952_18550 PF03739 Lipopolysaccharide export system permease LptF/LptG JM952_18560 PF00883 Cytosol aminopeptidase family, catalytic domain JM952_18560 PF02789 Cytosol aminopeptidase family, N-terminal domain JM952_18580 PF08264 Anticodon-binding domain of tRNA JM952_18580 PF00133 tRNA synthetases class I (I, L, M and V) JM952_18580 PF10458 Valyl tRNA synthetase tRNA binding arm JM952_18590 PF00544 Pectate lyase JM952_18595 PF00544 Pectate lyase JM952_18610 PF01066 CDP-alcohol phosphatidyltransferase JM952_18620 PF03129 Anticodon binding domain JM952_18620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JM952_18620 PF04073 Aminoacyl-tRNA editing domain JM952_18625 PF00816 H-NS histone family JM952_18635 PF02405 Permease MlaE JM952_18640 PF00005 ABC transporter JM952_18645 PF03886 ABC-type transport auxiliary lipoprotein component JM952_18645 PF02470 MlaD protein JM952_18670 PF14307 Glycosyltransferase WbsX JM952_18670 PF05045 Rhamnan synthesis protein F JM952_18675 PF01144 Coenzyme A transferase JM952_18680 PF01144 Coenzyme A transferase JM952_18685 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JM952_18685 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JM952_18685 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JM952_18685 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JM952_18690 PF01050 Mannose-6-phosphate isomerase JM952_18690 PF00483 Nucleotidyl transferase JM952_18695 PF04321 RmlD substrate binding domain JM952_18700 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JM952_18705 PF00483 Nucleotidyl transferase JM952_18710 PF16363 GDP-mannose 4,6 dehydratase JM952_18715 PF01012 Electron transfer flavoprotein domain JM952_18720 PF01012 Electron transfer flavoprotein domain JM952_18720 PF00766 Electron transfer flavoprotein FAD-binding domain JM952_18725 PF01050 Mannose-6-phosphate isomerase JM952_18725 PF00483 Nucleotidyl transferase JM952_18730 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JM952_18735 PF00535 Glycosyl transferase family 2 JM952_18755 PF01370 NAD dependent epimerase/dehydratase family JM952_18760 PF16363 GDP-mannose 4,6 dehydratase JM952_18775 PF00534 Glycosyl transferases group 1 JM952_18775 PF13439 Glycosyltransferase Family 4 JM952_18780 PF13847 Methyltransferase domain JM952_18780 PF00069 Protein kinase domain JM952_18785 PF00005 ABC transporter JM952_18800 PF01053 Cys/Met metabolism PLP-dependent enzyme JM952_18805 PF00571 CBS domain JM952_18805 PF00291 Pyridoxal-phosphate dependent enzyme JM952_18825 PF00437 Type II/IV secretion system protein JM952_18830 PF14497 Glutathione S-transferase, C-terminal domain JM952_18830 PF02798 Glutathione S-transferase, N-terminal domain JM952_18840 PF00271 Helicase conserved C-terminal domain JM952_18840 PF00270 DEAD/DEAH box helicase JM952_18845 PF01242 6-pyruvoyl tetrahydropterin synthase JM952_18860 PF13185 GAF domain JM952_18870 PF13419 Haloacid dehalogenase-like hydrolase JM952_18875 PF00817 impB/mucB/samB family JM952_18875 PF11799 impB/mucB/samB family C-terminal domain JM952_18875 PF11798 IMS family HHH motif JM952_18880 PF07977 FabA-like domain JM952_18885 PF02801 Beta-ketoacyl synthase, C-terminal domain JM952_18885 PF00109 Beta-ketoacyl synthase, N-terminal domain JM952_18890 PF01432 Peptidase family M3 JM952_18895 PF00291 Pyridoxal-phosphate dependent enzyme JM952_18905 PF00394 Multicopper oxidase JM952_18905 PF07731 Multicopper oxidase JM952_18905 PF07732 Multicopper oxidase JM952_18910 PF05275 Copper resistance protein B precursor (CopB) JM952_18915 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JM952_18945 PF01380 SIS domain JM952_18950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JM952_18955 PF00005 ABC transporter JM952_18960 PF12704 MacB-like periplasmic core domain JM952_18960 PF00005 ABC transporter JM952_18960 PF02687 FtsX-like permease family JM952_18965 PF02687 FtsX-like permease family JM952_18965 PF00005 ABC transporter JM952_18965 PF12704 MacB-like periplasmic core domain JM952_18980 PF00672 HAMP domain JM952_18980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_18980 PF00512 His Kinase A (phospho-acceptor) domain JM952_19005 PF00132 Bacterial transferase hexapeptide (six repeats) JM952_19005 PF14602 Hexapeptide repeat of succinyl-transferase JM952_19005 PF12804 MobA-like NTP transferase domain JM952_19020 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JM952_19020 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JM952_19025 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JM952_19025 PF02874 ATP synthase alpha/beta family, beta-barrel domain JM952_19030 PF00231 ATP synthase JM952_19035 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JM952_19035 PF00306 ATP synthase alpha/beta chain, C terminal domain JM952_19035 PF02874 ATP synthase alpha/beta family, beta-barrel domain JM952_19040 PF00213 ATP synthase delta (OSCP) subunit JM952_19045 PF00430 ATP synthase B/B' CF(0) JM952_19050 PF00137 ATP synthase subunit C JM952_19055 PF00119 ATP synthase A chain JM952_19070 PF01979 Amidohydrolase family JM952_19075 PF07992 Pyridine nucleotide-disulphide oxidoreductase JM952_19075 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JM952_19085 PF00364 Biotin-requiring enzyme JM952_19085 PF02817 e3 binding domain JM952_19085 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JM952_19120 PF03180 NLPA lipoprotein JM952_19125 PF00528 Binding-protein-dependent transport system inner membrane component JM952_19130 PF09383 NIL domain JM952_19130 PF00005 ABC transporter JM952_19135 PF00892 EamA-like transporter family JM952_19140 PF04461 Protein of unknown function (DUF520) JM952_19165 PF13419 Haloacid dehalogenase-like hydrolase JM952_19170 PF00849 RNA pseudouridylate synthase JM952_19170 PF01479 S4 domain JM952_19175 PF05175 Methyltransferase small domain JM952_19175 PF08468 Methyltransferase small domain N-terminal JM952_19185 PF07995 Glucose / Sorbosone dehydrogenase JM952_19195 PF18698 Histidine kinase sensor domain JM952_19195 PF00512 His Kinase A (phospho-acceptor) domain JM952_19195 PF00989 PAS fold JM952_19195 PF00672 HAMP domain JM952_19195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_19215 PF00842 Alanine racemase, C-terminal domain JM952_19215 PF01168 Alanine racemase, N-terminal domain JM952_19220 PF01266 FAD dependent oxidoreductase JM952_19225 PF01037 Lrp/AsnC ligand binding domain JM952_19235 PF01641 SelR domain JM952_19245 PF01618 MotA/TolQ/ExbB proton channel family JM952_19250 PF13677 Membrane MotB of proton-channel complex MotA/MotB JM952_19250 PF00691 OmpA family JM952_19275 PF01061 ABC-2 type transporter JM952_19280 PF00005 ABC transporter JM952_19285 PF00999 Sodium/hydrogen exchanger family JM952_19290 PF03795 YCII-related domain JM952_19295 PF02469 Fasciclin domain JM952_19300 PF03167 Uracil DNA glycosylase superfamily JM952_19310 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JM952_19315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_19315 PF03466 LysR substrate binding domain JM952_19320 PF03358 NADPH-dependent FMN reductase JM952_19325 PF00248 Aldo/keto reductase family JM952_19335 PF05649 Peptidase family M13 JM952_19335 PF01431 Peptidase family M13 JM952_19350 PF13520 Amino acid permease JM952_19360 PF00072 Response regulator receiver domain JM952_19360 PF04397 LytTr DNA-binding domain JM952_19365 PF00672 HAMP domain JM952_19365 PF06580 Histidine kinase JM952_19365 PF02743 Cache domain JM952_19365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_19385 PF00857 Isochorismatase family JM952_19390 PF05974 Domain of unknown function (DUF892) JM952_19395 PF05974 Domain of unknown function (DUF892) JM952_19400 PF05067 Manganese containing catalase JM952_19415 PF08448 PAS fold JM952_19415 PF01739 CheR methyltransferase, SAM binding domain JM952_19415 PF01339 CheB methylesterase JM952_19415 PF03705 CheR methyltransferase, all-alpha domain JM952_19430 PF02954 Bacterial regulatory protein, Fis family JM952_19430 PF00158 Sigma-54 interaction domain JM952_19430 PF00072 Response regulator receiver domain JM952_19440 PF01654 Cytochrome bd terminal oxidase subunit I JM952_19445 PF02322 Cytochrome bd terminal oxidase subunit II JM952_19475 PF03275 UDP-galactopyranose mutase JM952_19485 PF00664 ABC transporter transmembrane region JM952_19485 PF00005 ABC transporter JM952_19500 PF08240 Alcohol dehydrogenase GroES-like domain JM952_19500 PF13823 Alcohol dehydrogenase GroES-associated JM952_19500 PF00107 Zinc-binding dehydrogenase JM952_19570 PF00593 TonB dependent receptor JM952_19570 PF07715 TonB-dependent Receptor Plug Domain JM952_19585 PF00005 ABC transporter JM952_19595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_19595 PF03466 LysR substrate binding domain JM952_19600 PF01042 Endoribonuclease L-PSP JM952_19620 PF00248 Aldo/keto reductase family JM952_19625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_19625 PF03466 LysR substrate binding domain JM952_19645 PF00360 Phytochrome region JM952_19645 PF00990 Diguanylate cyclase, GGDEF domain JM952_19645 PF01590 GAF domain JM952_19645 PF00563 EAL domain JM952_19675 PF04546 Sigma-70, non-essential region JM952_19675 PF03979 Sigma-70 factor, region 1.1 JM952_19675 PF04542 Sigma-70 region 2 JM952_19675 PF04539 Sigma-70 region 3 JM952_19675 PF04545 Sigma-70, region 4 JM952_19675 PF00140 Sigma-70 factor, region 1.2 JM952_19680 PF02580 D-Tyr-tRNA(Tyr) deacylase JM952_19685 PF03279 Bacterial lipid A biosynthesis acyltransferase JM952_19695 PF00925 GTP cyclohydrolase II JM952_19715 PF00535 Glycosyl transferase family 2 JM952_19730 PF01189 16S rRNA methyltransferase RsmB/F JM952_19730 PF01029 NusB family JM952_19735 PF02911 Formyl transferase, C-terminal domain JM952_19735 PF00551 Formyl transferase JM952_19740 PF01327 Polypeptide deformylase JM952_19745 PF01476 LysM domain JM952_19750 PF17782 DprA winged helix domain JM952_19750 PF02481 DNA recombination-mediator protein A JM952_19755 PF04361 Protein of unknown function (DUF494) JM952_19760 PF07963 Prokaryotic N-terminal methylation motif JM952_19760 PF00114 Pilin (bacterial filament) JM952_19770 PF01751 Toprim domain JM952_19770 PF13368 Topoisomerase C-terminal repeat JM952_19770 PF01131 DNA topoisomerase JM952_19775 PF01300 Telomere recombination JM952_19790 PF01590 GAF domain JM952_19790 PF00990 Diguanylate cyclase, GGDEF domain JM952_19790 PF00360 Phytochrome region JM952_19790 PF00563 EAL domain JM952_19805 PF01343 Peptidase family S49 JM952_19810 PF01554 MatE JM952_19825 PF00270 DEAD/DEAH box helicase JM952_19825 PF00271 Helicase conserved C-terminal domain JM952_19825 PF17764 3′ DNA-binding domain (3′BD) JM952_19825 PF18074 Primosomal protein N C-terminal domain JM952_19825 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JM952_19830 PF00043 Glutathione S-transferase, C-terminal domain JM952_19830 PF13417 Glutathione S-transferase, N-terminal domain JM952_19845 PF07992 Pyridine nucleotide-disulphide oxidoreductase JM952_19850 PF03458 UPF0126 domain JM952_19855 PF04545 Sigma-70, region 4 JM952_19855 PF04542 Sigma-70 region 2 JM952_19860 PF03167 Uracil DNA glycosylase superfamily JM952_19865 PF01339 CheB methylesterase JM952_19865 PF00072 Response regulator receiver domain JM952_19870 PF18075 FtsX extracellular domain JM952_19875 PF00005 ABC transporter JM952_19880 PF12300 ATP-dependent RNA helicase RhlB JM952_19880 PF00271 Helicase conserved C-terminal domain JM952_19880 PF00270 DEAD/DEAH box helicase JM952_19885 PF00085 Thioredoxin JM952_19890 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JM952_19890 PF07498 Rho termination factor, N-terminal domain JM952_19890 PF07497 Rho termination factor, RNA-binding domain JM952_19900 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) JM952_19905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_19905 PF03466 LysR substrate binding domain JM952_19915 PF03971 Monomeric isocitrate dehydrogenase JM952_19925 PF00756 Putative esterase JM952_19925 PF01476 LysM domain JM952_19930 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JM952_19930 PF14489 QueF-like protein JM952_19935 PF07687 Peptidase dimerisation domain JM952_19935 PF01546 Peptidase family M20/M25/M40 JM952_19940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JM952_19945 PF00873 AcrB/AcrD/AcrF family JM952_19950 PF00873 AcrB/AcrD/AcrF family JM952_19975 PF04542 Sigma-70 region 2 JM952_19975 PF08281 Sigma-70, region 4 JM952_19980 PF07063 Domain of unknown function (DUF1338) JM952_20020 PF01427 D-ala-D-ala dipeptidase JM952_20025 PF04717 Type VI secretion system, phage-baseplate injector JM952_20025 PF01471 Putative peptidoglycan binding domain JM952_20040 PF01510 N-acetylmuramoyl-L-alanine amidase JM952_20050 PF13378 Enolase C-terminal domain-like JM952_20050 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JM952_20060 PF13520 Amino acid permease JM952_20075 PF05360 yiaA/B two helix domain JM952_20080 PF07995 Glucose / Sorbosone dehydrogenase JM952_20085 PF01915 Glycosyl hydrolase family 3 C-terminal domain JM952_20085 PF14310 Fibronectin type III-like domain JM952_20085 PF00933 Glycosyl hydrolase family 3 N terminal domain JM952_20090 PF02152 Dihydroneopterin aldolase JM952_20095 PF00814 Glycoprotease family JM952_20100 PF01165 Ribosomal protein S21 JM952_20105 PF09424 Yqey-like protein JM952_20110 PF03631 Virulence factor BrkB JM952_20115 PF10410 DnaB-helicase binding domain of primase JM952_20115 PF08278 DNA primase DnaG DnaB-binding JM952_20115 PF08275 DNA primase catalytic core, N-terminal domain JM952_20115 PF01807 CHC2 zinc finger JM952_20125 PF13593 SBF-like CPA transporter family (DUF4137) JM952_20130 PF11412 Disulphide bond corrector protein DsbC JM952_20130 PF02683 Cytochrome C biogenesis protein transmembrane region JM952_20135 PF01040 UbiA prenyltransferase family JM952_20160 PF00510 Cytochrome c oxidase subunit III JM952_20165 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 JM952_20175 PF00115 Cytochrome C and Quinol oxidase polypeptide I JM952_20180 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JM952_20180 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JM952_20190 PF00171 Aldehyde dehydrogenase family JM952_20190 PF01619 Proline dehydrogenase JM952_20190 PF14850 DNA-binding domain of Proline dehydrogenase JM952_20190 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JM952_20225 PF00579 tRNA synthetases class I (W and Y) JM952_20230 PF01551 Peptidase family M23 JM952_20230 PF04225 Opacity-associated protein A LysM-like domain JM952_20235 PF03702 Anhydro-N-acetylmuramic acid kinase JM952_20245 PF07690 Major Facilitator Superfamily JM952_20255 PF03372 Endonuclease/Exonuclease/phosphatase family JM952_20260 PF00156 Phosphoribosyl transferase domain JM952_20270 PF13614 AAA domain JM952_20275 PF17762 HTH domain found in ParB protein JM952_20275 PF02195 ParB-like nuclease domain JM952_20290 PF01370 NAD dependent epimerase/dehydratase family JM952_20295 PF00535 Glycosyl transferase family 2 JM952_20310 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JM952_20310 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JM952_20310 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JM952_20310 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JM952_20315 PF00692 dUTPase JM952_20320 PF02441 Flavoprotein JM952_20320 PF04127 DNA / pantothenate metabolism flavoprotein JM952_20325 PF04002 RadC-like JAB domain JM952_20330 PF05746 DALR anticodon binding domain JM952_20330 PF03485 Arginyl tRNA synthetase N terminal domain JM952_20330 PF00750 tRNA synthetases class I (R) JM952_20345 PF00106 short chain dehydrogenase JM952_20350 PF01757 Acyltransferase family JM952_20360 PF03033 Glycosyltransferase family 28 N-terminal domain JM952_20365 PF00501 AMP-binding enzyme JM952_20365 PF00668 Condensation domain JM952_20365 PF00550 Phosphopantetheine attachment site JM952_20365 PF13193 AMP-binding enzyme C-terminal domain JM952_20365 PF00975 Thioesterase domain JM952_20370 PF17944 Arginine decarboxylase C-terminal helical extension JM952_20370 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JM952_20370 PF17810 Arginine decarboxylase helical bundle domain JM952_20375 PF17284 Spermidine synthase tetramerisation domain JM952_20390 PF00543 Nitrogen regulatory protein P-II JM952_20395 PF04380 Membrane fusogenic activity JM952_20400 PF01078 Magnesium chelatase, subunit ChlI JM952_20400 PF13335 Magnesium chelatase, subunit ChlI C-terminal JM952_20415 PF00563 EAL domain JM952_20415 PF12792 CSS motif domain associated with EAL JM952_20420 PF00487 Fatty acid desaturase JM952_20425 PF00970 Oxidoreductase FAD-binding domain JM952_20425 PF00111 2Fe-2S iron-sulfur cluster binding domain JM952_20425 PF00175 Oxidoreductase NAD-binding domain JM952_20430 PF00440 Bacterial regulatory proteins, tetR family JM952_20450 PF01139 tRNA-splicing ligase RtcB JM952_20495 PF01370 NAD dependent epimerase/dehydratase family JM952_20495 PF08338 Domain of unknown function (DUF1731) JM952_20500 PF07992 Pyridine nucleotide-disulphide oxidoreductase JM952_20500 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JM952_20510 PF00072 Response regulator receiver domain JM952_20510 PF00486 Transcriptional regulatory protein, C terminal JM952_20515 PF00512 His Kinase A (phospho-acceptor) domain JM952_20515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_20515 PF08521 Two-component sensor kinase N-terminal JM952_20535 PF00595 PDZ domain JM952_20555 PF01594 AI-2E family transporter JM952_20560 PF13419 Haloacid dehalogenase-like hydrolase JM952_20565 PF00883 Cytosol aminopeptidase family, catalytic domain JM952_20565 PF02789 Cytosol aminopeptidase family, N-terminal domain JM952_20585 PF00072 Response regulator receiver domain JM952_20585 PF00196 Bacterial regulatory proteins, luxR family JM952_20590 PF07730 Histidine kinase JM952_20595 PF13533 Biotin-lipoyl like JM952_20600 PF00005 ABC transporter JM952_20620 PF00892 EamA-like transporter family JM952_20625 PF00892 EamA-like transporter family JM952_20640 PF00753 Metallo-beta-lactamase superfamily JM952_20645 PF00579 tRNA synthetases class I (W and Y) JM952_20650 PF05532 CsbD-like JM952_20690 PF02223 Thymidylate kinase JM952_20695 PF02311 AraC-like ligand binding domain JM952_20695 PF12833 Helix-turn-helix domain JM952_20720 PF03309 Type III pantothenate kinase JM952_20725 PF03099 Biotin/lipoate A/B protein ligase family JM952_20725 PF08279 HTH domain JM952_20725 PF02237 Biotin protein ligase C terminal domain JM952_20735 PF06167 Glucose-regulated metallo-peptidase M90 JM952_20750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_20755 PF00486 Transcriptional regulatory protein, C terminal JM952_20755 PF00072 Response regulator receiver domain JM952_20765 PF01207 Dihydrouridine synthase (Dus) JM952_20790 PF06628 Catalase-related immune-responsive JM952_20790 PF00199 Catalase JM952_20795 PF13307 Helicase C-terminal domain JM952_20795 PF06733 DEAD_2 JM952_20810 PF01488 Shikimate / quinate 5-dehydrogenase JM952_20810 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JM952_20810 PF08501 Shikimate dehydrogenase substrate binding domain JM952_20820 PF00667 FAD binding domain JM952_20820 PF00258 Flavodoxin JM952_20820 PF00175 Oxidoreductase NAD-binding domain JM952_20825 PF00490 Delta-aminolevulinic acid dehydratase JM952_20860 PF02798 Glutathione S-transferase, N-terminal domain JM952_20860 PF00043 Glutathione S-transferase, C-terminal domain JM952_20880 PF04820 Tryptophan halogenase JM952_20900 PF00005 ABC transporter JM952_20910 PF01381 Helix-turn-helix JM952_20920 PF02583 Metal-sensitive transcriptional repressor JM952_20925 PF01545 Cation efflux family JM952_20930 PF01229 Glycosyl hydrolases family 39 JM952_20935 PF00175 Oxidoreductase NAD-binding domain JM952_20935 PF01383 CpcD/allophycocyanin linker domain JM952_20940 PF00005 ABC transporter JM952_20945 PF01061 ABC-2 type transporter JM952_20955 PF08546 Ketopantoate reductase PanE/ApbA C terminal JM952_20955 PF02558 Ketopantoate reductase PanE/ApbA JM952_20970 PF03061 Thioesterase superfamily JM952_20985 PF00268 Ribonucleotide reductase, small chain JM952_20990 PF02867 Ribonucleotide reductase, barrel domain JM952_20990 PF03477 ATP cone domain JM952_20990 PF00317 Ribonucleotide reductase, all-alpha domain JM952_21000 PF13380 CoA binding domain JM952_21000 PF00583 Acetyltransferase (GNAT) family JM952_21000 PF13607 Succinyl-CoA ligase like flavodoxin domain JM952_21010 PF03448 MgtE intracellular N domain JM952_21010 PF01769 Divalent cation transporter JM952_21010 PF00571 CBS domain JM952_21015 PF00194 Eukaryotic-type carbonic anhydrase JM952_21020 PF02254 TrkA-N domain JM952_21020 PF00999 Sodium/hydrogen exchanger family JM952_21025 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JM952_21025 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JM952_21030 PF00723 Glycosyl hydrolases family 15 JM952_21035 PF01451 Low molecular weight phosphotyrosine protein phosphatase JM952_21045 PF05166 YcgL domain JM952_21050 PF00109 Beta-ketoacyl synthase, N-terminal domain JM952_21050 PF02801 Beta-ketoacyl synthase, C-terminal domain JM952_21060 PF00535 Glycosyl transferase family 2 JM952_21065 PF04820 Tryptophan halogenase JM952_21110 PF07977 FabA-like domain JM952_21125 PF00550 Phosphopantetheine attachment site JM952_21130 PF04820 Tryptophan halogenase JM952_21160 PF01218 Coproporphyrinogen III oxidase JM952_21165 PF01367 5'-3' exonuclease, C-terminal SAM fold JM952_21165 PF00476 DNA polymerase family A JM952_21165 PF01612 3'-5' exonuclease JM952_21165 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JM952_21175 PF06812 ImpA, N-terminal, type VI secretion system JM952_21185 PF12464 Maltose acetyltransferase JM952_21185 PF14602 Hexapeptide repeat of succinyl-transferase JM952_21195 PF00580 UvrD/REP helicase N-terminal domain JM952_21195 PF13361 UvrD-like helicase C-terminal domain JM952_21205 PF13091 PLD-like domain JM952_21205 PF13396 Phospholipase_D-nuclease N-terminal JM952_21210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_21210 PF03466 LysR substrate binding domain JM952_21215 PF03737 Aldolase/RraA JM952_21220 PF04303 PrpF protein JM952_21225 PF04909 Amidohydrolase JM952_21230 PF00471 Ribosomal protein L33 JM952_21235 PF00830 Ribosomal L28 family JM952_21245 PF00873 AcrB/AcrD/AcrF family JM952_21255 PF00529 HlyD membrane-fusion protein of T1SS JM952_21255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JM952_21275 PF02527 rRNA small subunit methyltransferase G JM952_21280 PF16655 PhoD-like phosphatase, N-terminal domain JM952_21280 PF09423 PhoD-like phosphatase JM952_21290 PF04222 Protein of unknown function (DUF416) JM952_21330 PF01648 4'-phosphopantetheinyl transferase superfamily JM952_21335 PF04226 Transglycosylase associated protein JM952_21380 PF00480 ROK family JM952_21390 PF00639 PPIC-type PPIASE domain JM952_21390 PF09312 SurA N-terminal domain JM952_21405 PF00474 Sodium:solute symporter family JM952_21410 PF04341 Protein of unknown function, DUF485 JM952_21420 PF16177 Acetyl-coenzyme A synthetase N-terminus JM952_21420 PF00501 AMP-binding enzyme JM952_21420 PF13193 AMP-binding enzyme C-terminal domain JM952_21425 PF00196 Bacterial regulatory proteins, luxR family JM952_21425 PF00072 Response regulator receiver domain JM952_21445 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain JM952_21445 PF04616 Glycosyl hydrolases family 43 JM952_21450 PF00248 Aldo/keto reductase family JM952_21465 PF01557 Fumarylacetoacetate (FAA) hydrolase family JM952_21470 PF13378 Enolase C-terminal domain-like JM952_21470 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JM952_21475 PF05336 L-rhamnose mutarotase JM952_21480 PF07690 Major Facilitator Superfamily JM952_21485 PF09339 IclR helix-turn-helix domain JM952_21485 PF01614 Bacterial transcriptional regulator JM952_21500 PF02659 Putative manganese efflux pump JM952_21505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_21505 PF00512 His Kinase A (phospho-acceptor) domain JM952_21505 PF09456 RcsC Alpha-Beta-Loop (ABL) JM952_21505 PF00072 Response regulator receiver domain JM952_21510 PF06165 Glycosyltransferase family 36 JM952_21510 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain JM952_21525 PF13570 PQQ-like domain JM952_21525 PF01011 PQQ enzyme repeat JM952_21525 PF13360 PQQ-like domain JM952_21550 PF04357 TamB, inner membrane protein subunit of TAM complex JM952_21555 PF01103 Surface antigen JM952_21555 PF17243 POTRA domain TamA domain 1 JM952_21560 PF05746 DALR anticodon binding domain JM952_21560 PF02092 Glycyl-tRNA synthetase beta subunit JM952_21565 PF02091 Glycyl-tRNA synthetase alpha subunit JM952_21570 PF00437 Type II/IV secretion system protein JM952_21570 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JM952_21575 PF00117 Glutamine amidotransferase class-I JM952_21575 PF00958 GMP synthase C terminal domain JM952_21585 PF00902 Sec-independent protein translocase protein (TatC) JM952_21590 PF02416 mttA/Hcf106 family JM952_21595 PF02416 mttA/Hcf106 family JM952_21605 PF00762 Ferrochelatase JM952_21610 PF12697 Alpha/beta hydrolase family JM952_21620 PF04381 Putative exonuclease, RdgC JM952_21625 PF01171 PP-loop family JM952_21635 PF00356 Bacterial regulatory proteins, lacI family JM952_21640 PF07477 Glycosyl hydrolase family 67 C-terminus JM952_21640 PF07488 Glycosyl hydrolase family 67 middle domain JM952_21640 PF03648 Glycosyl hydrolase family 67 N-terminus JM952_21650 PF13378 Enolase C-terminal domain-like JM952_21650 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JM952_21655 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain JM952_21655 PF04616 Glycosyl hydrolases family 43 JM952_21660 PF07691 PA14 domain JM952_21660 PF01915 Glycosyl hydrolase family 3 C-terminal domain JM952_21660 PF00933 Glycosyl hydrolase family 3 N terminal domain JM952_21660 PF14310 Fibronectin type III-like domain JM952_21665 PF01232 Mannitol dehydrogenase Rossmann domain JM952_21665 PF08125 Mannitol dehydrogenase C-terminal domain JM952_21705 PF08450 SMP-30/Gluconolactonase/LRE-like region JM952_21715 PF00331 Glycosyl hydrolase family 10 JM952_21720 PF02837 Glycosyl hydrolases family 2, sugar binding domain JM952_21720 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JM952_21720 PF00703 Glycosyl hydrolases family 2 JM952_21720 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 JM952_21720 PF16355 Domain of unknown function (DUF4982) JM952_21725 PF02614 Glucuronate isomerase JM952_21730 PF00331 Glycosyl hydrolase family 10 JM952_21730 PF03422 Carbohydrate binding module (family 6) JM952_21730 PF00553 Cellulose binding domain JM952_21750 PF04616 Glycosyl hydrolases family 43 JM952_21780 PF00698 Acyl transferase domain JM952_21780 PF16197 Ketoacyl-synthetase C-terminal extension JM952_21780 PF00109 Beta-ketoacyl synthase, N-terminal domain JM952_21780 PF02801 Beta-ketoacyl synthase, C-terminal domain JM952_21780 PF08659 KR domain JM952_21780 PF00550 Phosphopantetheine attachment site JM952_21780 PF14765 Polyketide synthase dehydratase JM952_21780 PF08240 Alcohol dehydrogenase GroES-like domain JM952_21780 PF00107 Zinc-binding dehydrogenase JM952_21785 PF01553 Acyltransferase JM952_21795 PF00356 Bacterial regulatory proteins, lacI family JM952_21810 PF04820 Tryptophan halogenase JM952_21815 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JM952_21820 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) JM952_21825 PF04337 Protein of unknown function, DUF480 JM952_21835 PF13302 Acetyltransferase (GNAT) domain JM952_21840 PF00580 UvrD/REP helicase N-terminal domain JM952_21840 PF13361 UvrD-like helicase C-terminal domain JM952_21870 PF00265 Thymidine kinase JM952_21875 PF00360 Phytochrome region JM952_21875 PF08446 PAS fold JM952_21875 PF00512 His Kinase A (phospho-acceptor) domain JM952_21875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JM952_21875 PF01590 GAF domain JM952_21880 PF04349 Periplasmic glucan biosynthesis protein, MdoG JM952_21895 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JM952_21895 PF06827 Zinc finger found in FPG and IleRS JM952_21895 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JM952_21925 PF03594 Benzoate membrane transport protein JM952_21935 PF13426 PAS domain JM952_21935 PF00360 Phytochrome region JM952_21935 PF08446 PAS fold JM952_21935 PF01590 GAF domain JM952_21940 PF01126 Heme oxygenase JM952_21945 PF07690 Major Facilitator Superfamily JM952_21950 PF01263 Aldose 1-epimerase JM952_21960 PF02810 SEC-C motif JM952_21970 PF01925 Sulfite exporter TauE/SafE JM952_21975 PF00593 TonB dependent receptor JM952_21975 PF07715 TonB-dependent Receptor Plug Domain JM952_22000 PF01227 GTP cyclohydrolase I JM952_22010 PF07869 Protein of unknown function (DUF1656) JM952_22015 PF00529 HlyD membrane-fusion protein of T1SS JM952_22015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JM952_22020 PF02321 Outer membrane efflux protein JM952_22025 PF04632 Fusaric acid resistance protein family JM952_22030 PF00083 Sugar (and other) transporter JM952_22045 PF00106 short chain dehydrogenase JM952_22050 PF13396 Phospholipase_D-nuclease N-terminal JM952_22050 PF13091 PLD-like domain JM952_22130 PF00849 RNA pseudouridylate synthase JM952_22145 PF13614 AAA domain JM952_22170 PF01381 Helix-turn-helix JM952_22175 PF13538 UvrD-like helicase C-terminal domain JM952_22180 PF13361 UvrD-like helicase C-terminal domain JM952_22180 PF00580 UvrD/REP helicase N-terminal domain JM952_22180 PF12705 PD-(D/E)XK nuclease superfamily JM952_22185 PF17946 RecC C-terminal domain JM952_22220 PF00005 ABC transporter JM952_22225 PF02405 Permease MlaE JM952_22230 PF02470 MlaD protein JM952_22235 PF05494 MlaC protein JM952_22245 PF04333 MlaA lipoprotein JM952_22255 PF00255 Glutathione peroxidase JM952_22265 PF02646 RmuC family JM952_22275 PF00107 Zinc-binding dehydrogenase JM952_22275 PF08240 Alcohol dehydrogenase GroES-like domain JM952_22280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JM952_22280 PF03466 LysR substrate binding domain JM952_22295 PF13520 Amino acid permease JM952_22305 PF00593 TonB dependent receptor JM952_22305 PF07715 TonB-dependent Receptor Plug Domain JM952_22310 PF10947 Protein of unknown function (DUF2628) JM952_22315 PF00990 Diguanylate cyclase, GGDEF domain JM952_22320 PF05651 Putative sugar diacid recognition JM952_22320 PF17853 GGDEF-like domain JM952_22320 PF13556 PucR C-terminal helix-turn-helix domain JM952_22325 PF02595 Glycerate kinase family JM952_22330 PF07690 Major Facilitator Superfamily JM952_22350 PF17785 PUA-like domain JM952_22350 PF10672 S-adenosylmethionine-dependent methyltransferase JM952_22355 PF03741 Integral membrane protein TerC family JM952_22360 PF01694 Rhomboid family JM952_22380 PF03009 Glycerophosphoryl diester phosphodiesterase family JM952_22395 PF01569 PAP2 superfamily JM952_22400 PF00593 TonB dependent receptor JM952_22405 PF01926 50S ribosome-binding GTPase JM952_22405 PF12631 MnmE helical domain JM952_22405 PF10396 GTP-binding protein TrmE N-terminus JM952_22410 PF01522 Polysaccharide deacetylase JM952_22415 PF02096 60Kd inner membrane protein JM952_22415 PF14849 YidC periplasmic domain JM952_22420 PF00825 Ribonuclease P JM952_22425 PF00468 Ribosomal protein L34