locus-tag class description JOA57_00005 PF00308 Bacterial dnaA protein JOA57_00005 PF08299 Bacterial dnaA protein helix-turn-helix JOA57_00005 PF11638 DnaA N-terminal domain JOA57_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JOA57_00010 PF02767 DNA polymerase III beta subunit, central domain JOA57_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JOA57_00015 PF02463 RecF/RecN/SMC N terminal domain JOA57_00020 PF01751 Toprim domain JOA57_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_00020 PF18053 DNA gyrase B subunit insert domain JOA57_00020 PF00986 DNA gyrase B subunit, carboxyl terminus JOA57_00020 PF00204 DNA gyrase B JOA57_00030 PF01435 Peptidase family M48 JOA57_00040 PF03544 Gram-negative bacterial TonB protein C-terminal JOA57_00045 PF01618 MotA/TolQ/ExbB proton channel family JOA57_00050 PF02472 Biopolymer transport protein ExbD/TolR JOA57_00055 PF02472 Biopolymer transport protein ExbD/TolR JOA57_00060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JOA57_00070 PF13396 Phospholipase_D-nuclease N-terminal JOA57_00070 PF13091 PLD-like domain JOA57_00075 PF04055 Radical SAM superfamily JOA57_00085 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JOA57_00100 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JOA57_00100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JOA57_00100 PF01842 ACT domain JOA57_00105 PF03572 Peptidase family S41 JOA57_00105 PF13180 PDZ domain JOA57_00110 PF01551 Peptidase family M23 JOA57_00120 PF04389 Peptidase family M28 JOA57_00135 PF00150 Cellulase (glycosyl hydrolase family 5) JOA57_00140 PF00150 Cellulase (glycosyl hydrolase family 5) JOA57_00145 PF00150 Cellulase (glycosyl hydrolase family 5) JOA57_00150 PF00107 Zinc-binding dehydrogenase JOA57_00150 PF08240 Alcohol dehydrogenase GroES-like domain JOA57_00165 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOA57_00165 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JOA57_00170 PF00310 Glutamine amidotransferases class-II JOA57_00170 PF04898 Glutamate synthase central domain JOA57_00170 PF01645 Conserved region in glutamate synthase JOA57_00170 PF01493 GXGXG motif JOA57_00185 PF00398 Ribosomal RNA adenine dimethylase JOA57_00195 PF02678 Pirin JOA57_00195 PF05726 Pirin C-terminal cupin domain JOA57_00205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_00205 PF03466 LysR substrate binding domain JOA57_00220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_00220 PF03466 LysR substrate binding domain JOA57_00280 PF00271 Helicase conserved C-terminal domain JOA57_00280 PF00270 DEAD/DEAH box helicase JOA57_00280 PF09369 Domain of unknown function (DUF1998) JOA57_00285 PF13784 Fic/DOC family N-terminal JOA57_00285 PF02661 Fic/DOC family JOA57_00290 PF03006 Haemolysin-III related JOA57_00315 PF02525 Flavodoxin-like fold JOA57_00325 PF01638 HxlR-like helix-turn-helix JOA57_00330 PF13614 AAA domain JOA57_00365 PF01872 RibD C-terminal domain JOA57_00370 PF05532 CsbD-like JOA57_00400 PF01447 Thermolysin metallopeptidase, catalytic domain JOA57_00400 PF02868 Thermolysin metallopeptidase, alpha-helical domain JOA57_00400 PF16485 Protealysin propeptide JOA57_00410 PF13344 Haloacid dehalogenase-like hydrolase JOA57_00410 PF00293 NUDIX domain JOA57_00415 PF01594 AI-2E family transporter JOA57_00420 PF07859 alpha/beta hydrolase fold JOA57_00430 PF00085 Thioredoxin JOA57_00435 PF08946 Osmosensory transporter coiled coil JOA57_00435 PF00083 Sugar (and other) transporter JOA57_00455 PF03377 TAL effector repeat JOA57_00480 PF01883 Iron-sulfur cluster assembly protein JOA57_00480 PF10609 NUBPL iron-transfer P-loop NTPase JOA57_00515 PF02534 Type IV secretory system Conjugative DNA transfer JOA57_00545 PF05598 Transposase domain (DUF772) JOA57_00585 PF05394 Avirulence protein JOA57_00595 PF03377 TAL effector repeat JOA57_00625 PF17863 AAA lid domain JOA57_00625 PF07726 ATPase family associated with various cellular activities (AAA) JOA57_00660 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JOA57_00665 PF00155 Aminotransferase class I and II JOA57_00670 PF00593 TonB dependent receptor JOA57_00670 PF07715 TonB-dependent Receptor Plug Domain JOA57_00680 PF00171 Aldehyde dehydrogenase family JOA57_00700 PF02735 Ku70/Ku80 beta-barrel domain JOA57_00705 PF13298 DNA polymerase Ligase (LigD) JOA57_00705 PF01068 ATP dependent DNA ligase domain JOA57_00705 PF04679 ATP dependent DNA ligase C terminal region JOA57_00715 PF01070 FMN-dependent dehydrogenase JOA57_00720 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family JOA57_00725 PF07730 Histidine kinase JOA57_00730 PF00072 Response regulator receiver domain JOA57_00730 PF00196 Bacterial regulatory proteins, luxR family JOA57_00760 PF00486 Transcriptional regulatory protein, C terminal JOA57_00760 PF18500 CadC C-terminal domain 1 JOA57_00765 PF12241 Trans-2-enoyl-CoA reductase catalytic region JOA57_00765 PF07055 Enoyl reductase FAD binding domain JOA57_00765 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JOA57_00780 PF00294 pfkB family carbohydrate kinase JOA57_00805 PF01095 Pectinesterase JOA57_00825 PF01609 Transposase DDE domain JOA57_00825 PF05598 Transposase domain (DUF772) JOA57_00850 PF11896 Domain of unknown function (DUF3416) JOA57_00850 PF00128 Alpha amylase, catalytic domain JOA57_00855 PF16657 Maltogenic Amylase, C-terminal domain JOA57_00855 PF00128 Alpha amylase, catalytic domain JOA57_00860 PF00128 Alpha amylase, catalytic domain JOA57_00860 PF02806 Alpha amylase, C-terminal all-beta domain JOA57_00860 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JOA57_00890 PF00248 Aldo/keto reductase family JOA57_00895 PF13472 GDSL-like Lipase/Acylhydrolase family JOA57_00900 PF00135 Carboxylesterase family JOA57_00905 PF13472 GDSL-like Lipase/Acylhydrolase family JOA57_00905 PF07859 alpha/beta hydrolase fold JOA57_00915 PF03480 Bacterial extracellular solute-binding protein, family 7 JOA57_00925 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JOA57_00930 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain JOA57_00930 PF04616 Glycosyl hydrolases family 43 JOA57_00935 PF00356 Bacterial regulatory proteins, lacI family JOA57_00940 PF04962 KduI/IolB family JOA57_00955 PF00657 GDSL-like Lipase/Acylhydrolase JOA57_00965 PF00351 Biopterin-dependent aromatic amino acid hydroxylase JOA57_00970 PF01037 Lrp/AsnC ligand binding domain JOA57_00975 PF07715 TonB-dependent Receptor Plug Domain JOA57_00975 PF07660 Secretin and TonB N terminus short domain JOA57_00975 PF00593 TonB dependent receptor JOA57_00980 PF01734 Patatin-like phospholipase JOA57_00995 PF00005 ABC transporter JOA57_01010 PF00571 CBS domain JOA57_01010 PF00005 ABC transporter JOA57_01015 PF00528 Binding-protein-dependent transport system inner membrane component JOA57_01025 PF03781 Sulfatase-modifying factor enzyme 1 JOA57_01025 PF12867 DinB superfamily JOA57_01030 PF10017 Histidine-specific methyltransferase, SAM-dependent JOA57_01060 PF10609 NUBPL iron-transfer P-loop NTPase JOA57_01060 PF01883 Iron-sulfur cluster assembly protein JOA57_01065 PF00300 Histidine phosphatase superfamily (branch 1) JOA57_01070 PF04264 YceI-like domain JOA57_01075 PF13091 PLD-like domain JOA57_01080 PF03061 Thioesterase superfamily JOA57_01100 PF01161 Phosphatidylethanolamine-binding protein JOA57_01110 PF02673 Bacitracin resistance protein BacA JOA57_01115 PF03951 Glutamine synthetase, beta-Grasp domain JOA57_01115 PF00120 Glutamine synthetase, catalytic domain JOA57_01120 PF00543 Nitrogen regulatory protein P-II JOA57_01125 PF00909 Ammonium Transporter Family JOA57_01130 PF00989 PAS fold JOA57_01130 PF00512 His Kinase A (phospho-acceptor) domain JOA57_01130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_01135 PF02954 Bacterial regulatory protein, Fis family JOA57_01135 PF00158 Sigma-54 interaction domain JOA57_01135 PF00072 Response regulator receiver domain JOA57_01145 PF00080 Copper/zinc superoxide dismutase (SODC) JOA57_01150 PF00080 Copper/zinc superoxide dismutase (SODC) JOA57_01155 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JOA57_01165 PF02803 Thiolase, C-terminal domain JOA57_01165 PF00108 Thiolase, N-terminal domain JOA57_01205 PF00581 Rhodanese-like domain JOA57_01210 PF02556 Preprotein translocase subunit SecB JOA57_01215 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JOA57_01215 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JOA57_01225 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JOA57_01225 PF00205 Thiamine pyrophosphate enzyme, central domain JOA57_01225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JOA57_01240 PF00588 SpoU rRNA Methylase family JOA57_01255 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JOA57_01255 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JOA57_01260 PF13784 Fic/DOC family N-terminal JOA57_01260 PF02661 Fic/DOC family JOA57_01265 PF01555 DNA methylase JOA57_01275 PF00561 alpha/beta hydrolase fold JOA57_01280 PF03692 Putative zinc- or iron-chelating domain JOA57_01285 PF00501 AMP-binding enzyme JOA57_01290 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family JOA57_01305 PF01820 D-ala D-ala ligase N-terminus JOA57_01305 PF07478 D-ala D-ala ligase C-terminus JOA57_01315 PF03109 ABC1 family JOA57_01320 PF00849 RNA pseudouridylate synthase JOA57_01330 PF00472 RF-1 domain JOA57_01340 PF01112 Asparaginase JOA57_01345 PF01432 Peptidase family M3 JOA57_01355 PF12706 Beta-lactamase superfamily domain JOA57_01370 PF12833 Helix-turn-helix domain JOA57_01375 PF03466 LysR substrate binding domain JOA57_01375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_01380 PF01274 Malate synthase JOA57_01385 PF00463 Isocitrate lyase family JOA57_01390 PF00990 Diguanylate cyclase, GGDEF domain JOA57_01410 PF00326 Prolyl oligopeptidase family JOA57_01415 PF00289 Biotin carboxylase, N-terminal domain JOA57_01415 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JOA57_01415 PF18140 Propionyl-coenzyme A carboxylase BT domain JOA57_01415 PF00364 Biotin-requiring enzyme JOA57_01415 PF02785 Biotin carboxylase C-terminal domain JOA57_01420 PF01039 Carboxyl transferase domain JOA57_01425 PF02770 Acyl-CoA dehydrogenase, middle domain JOA57_01425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JOA57_01425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JOA57_01465 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JOA57_01480 PF07683 Cobalamin synthesis protein cobW C-terminal domain JOA57_01480 PF02492 CobW/HypB/UreG, nucleotide-binding domain JOA57_01500 PF03969 AFG1-like ATPase JOA57_01510 PF01047 MarR family JOA57_01515 PF02566 OsmC-like protein JOA57_01525 PF07859 alpha/beta hydrolase fold JOA57_01545 PF00248 Aldo/keto reductase family JOA57_01550 PF00107 Zinc-binding dehydrogenase JOA57_01550 PF16884 N-terminal domain of oxidoreductase JOA57_01555 PF00248 Aldo/keto reductase family JOA57_01565 PF00849 RNA pseudouridylate synthase JOA57_01575 PF00271 Helicase conserved C-terminal domain JOA57_01575 PF08482 ATP-dependent helicase C-terminal JOA57_01575 PF04408 Helicase associated domain (HA2) JOA57_01575 PF00270 DEAD/DEAH box helicase JOA57_01580 PF00672 HAMP domain JOA57_01580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOA57_01580 PF02203 Tar ligand binding domain homologue JOA57_01585 PF07308 Protein of unknown function (DUF1456) JOA57_01590 PF00576 HIUase/Transthyretin family JOA57_01595 PF13454 FAD-NAD(P)-binding JOA57_01615 PF00266 Aminotransferase class-V JOA57_01620 PF01546 Peptidase family M20/M25/M40 JOA57_01620 PF07687 Peptidase dimerisation domain JOA57_01625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_01625 PF03466 LysR substrate binding domain JOA57_01635 PF07690 Major Facilitator Superfamily JOA57_01640 PF03372 Endonuclease/Exonuclease/phosphatase family JOA57_01645 PF13091 PLD-like domain JOA57_01655 PF01425 Amidase JOA57_01660 PF01156 Inosine-uridine preferring nucleoside hydrolase JOA57_01670 PF00860 Permease family JOA57_01675 PF00111 2Fe-2S iron-sulfur cluster binding domain JOA57_01680 PF00355 Rieske [2Fe-2S] domain JOA57_01685 PF03466 LysR substrate binding domain JOA57_01685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_01690 PF01026 TatD related DNase JOA57_01700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_01700 PF03466 LysR substrate binding domain JOA57_01705 PF07690 Major Facilitator Superfamily JOA57_01720 PF02146 Sir2 family JOA57_01725 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JOA57_01730 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JOA57_01730 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JOA57_01740 PF00551 Formyl transferase JOA57_01750 PF02219 Methylenetetrahydrofolate reductase JOA57_01755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_01755 PF03466 LysR substrate binding domain JOA57_01760 PF03358 NADPH-dependent FMN reductase JOA57_01770 PF08267 Cobalamin-independent synthase, N-terminal domain JOA57_01770 PF01717 Cobalamin-independent synthase, Catalytic domain JOA57_01785 PF05368 NmrA-like family JOA57_01790 PF01638 HxlR-like helix-turn-helix JOA57_01800 PF02203 Tar ligand binding domain homologue JOA57_01800 PF00672 HAMP domain JOA57_01800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOA57_01840 PF13495 Phage integrase, N-terminal SAM-like domain JOA57_01840 PF00589 Phage integrase family JOA57_01845 PF00920 Dehydratase family JOA57_01855 PF03692 Putative zinc- or iron-chelating domain JOA57_01865 PF00132 Bacterial transferase hexapeptide (six repeats) JOA57_01875 PF07690 Major Facilitator Superfamily JOA57_01880 PF11871 Domain of unknown function (DUF3391) JOA57_01880 PF01966 HD domain JOA57_01900 PF00171 Aldehyde dehydrogenase family JOA57_01910 PF01494 FAD binding domain JOA57_01920 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JOA57_01920 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JOA57_01925 PF00230 Major intrinsic protein JOA57_01930 PF01266 FAD dependent oxidoreductase JOA57_01930 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JOA57_01935 PF00455 DeoR C terminal sensor domain JOA57_01935 PF08220 DeoR-like helix-turn-helix domain JOA57_01940 PF00970 Oxidoreductase FAD-binding domain JOA57_01940 PF00111 2Fe-2S iron-sulfur cluster binding domain JOA57_01945 PF00355 Rieske [2Fe-2S] domain JOA57_01950 PF01144 Coenzyme A transferase JOA57_01955 PF01144 Coenzyme A transferase JOA57_01960 PF00108 Thiolase, N-terminal domain JOA57_01960 PF02803 Thiolase, C-terminal domain JOA57_01965 PF00775 Dioxygenase JOA57_01965 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal JOA57_01970 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal JOA57_01970 PF00775 Dioxygenase JOA57_01975 PF10397 Adenylosuccinate lyase C-terminus JOA57_01975 PF00206 Lyase JOA57_01980 PF12146 Serine aminopeptidase, S33 JOA57_01985 PF02627 Carboxymuconolactone decarboxylase family JOA57_01995 PF09339 IclR helix-turn-helix domain JOA57_01995 PF01614 Bacterial transcriptional regulator JOA57_02005 PF05598 Transposase domain (DUF772) JOA57_02005 PF01609 Transposase DDE domain JOA57_02010 PF07859 alpha/beta hydrolase fold JOA57_02015 PF10677 Protein of unknown function (DUF2490) JOA57_02020 PF13932 GidA associated domain JOA57_02020 PF01134 Glucose inhibited division protein A JOA57_02030 PF00291 Pyridoxal-phosphate dependent enzyme JOA57_02050 PF13649 Methyltransferase domain JOA57_02060 PF12697 Alpha/beta hydrolase family JOA57_02070 PF00155 Aminotransferase class I and II JOA57_02075 PF04055 Radical SAM superfamily JOA57_02075 PF06968 Biotin and Thiamin Synthesis associated domain JOA57_02085 PF01040 UbiA prenyltransferase family JOA57_02105 PF07715 TonB-dependent Receptor Plug Domain JOA57_02105 PF00593 TonB dependent receptor JOA57_02110 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JOA57_02110 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JOA57_02155 PF12794 Mechanosensitive ion channel inner membrane domain 1 JOA57_02155 PF12795 Mechanosensitive ion channel porin domain JOA57_02155 PF00924 Mechanosensitive ion channel JOA57_02160 PF00884 Sulfatase JOA57_02165 PF03109 ABC1 family JOA57_02170 PF05661 Protein of unknown function (DUF808) JOA57_02175 PF02638 Glycosyl hydrolase-like 10 JOA57_02180 PF00990 Diguanylate cyclase, GGDEF domain JOA57_02185 PF08323 Starch synthase catalytic domain JOA57_02185 PF00534 Glycosyl transferases group 1 JOA57_02190 PF00128 Alpha amylase, catalytic domain JOA57_02190 PF02806 Alpha amylase, C-terminal all-beta domain JOA57_02190 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JOA57_02195 PF00128 Alpha amylase, catalytic domain JOA57_02195 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JOA57_02195 PF11941 Domain of unknown function (DUF3459) JOA57_02200 PF02446 4-alpha-glucanotransferase JOA57_02205 PF00128 Alpha amylase, catalytic domain JOA57_02215 PF00128 Alpha amylase, catalytic domain JOA57_02215 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JOA57_02220 PF13460 NAD(P)H-binding JOA57_02235 PF06903 VirK protein JOA57_02240 PF02321 Outer membrane efflux protein JOA57_02245 PF00440 Bacterial regulatory proteins, tetR family JOA57_02255 PF00873 AcrB/AcrD/AcrF family JOA57_02275 PF00270 DEAD/DEAH box helicase JOA57_02275 PF00271 Helicase conserved C-terminal domain JOA57_02285 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JOA57_02285 PF00364 Biotin-requiring enzyme JOA57_02285 PF02817 e3 binding domain JOA57_02295 PF02779 Transketolase, pyrimidine binding domain JOA57_02295 PF02780 Transketolase, C-terminal domain JOA57_02300 PF00676 Dehydrogenase E1 component JOA57_02310 PF03301 Tryptophan 2,3-dioxygenase JOA57_02315 PF00854 POT family JOA57_02325 PF01047 MarR family JOA57_02330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JOA57_02335 PF04480 Protein of unknown function (DUF559) JOA57_02340 PF04209 homogentisate 1,2-dioxygenase JOA57_02365 PF03334 Na+/H+ antiporter subunit JOA57_02370 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) JOA57_02380 PF00361 Proton-conducting membrane transporter JOA57_02385 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JOA57_02390 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JOA57_02390 PF00361 Proton-conducting membrane transporter JOA57_02390 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter JOA57_02390 PF13244 Domain of unknown function (DUF4040) JOA57_02405 PF01609 Transposase DDE domain JOA57_02405 PF05598 Transposase domain (DUF772) JOA57_02435 PF01259 SAICAR synthetase JOA57_02440 PF00684 DnaJ central domain JOA57_02440 PF00226 DnaJ domain JOA57_02440 PF01556 DnaJ C terminal domain JOA57_02450 PF00834 Ribulose-phosphate 3 epimerase family JOA57_02460 PF00781 Diacylglycerol kinase catalytic domain JOA57_02465 PF04715 Anthranilate synthase component I, N terminal region JOA57_02465 PF00425 chorismate binding enzyme JOA57_02470 PF00155 Aminotransferase class I and II JOA57_02480 PF18766 SWI2/SNF2 ATPase JOA57_02480 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JOA57_02480 PF12008 Type I restriction and modification enzyme - subunit R C terminal JOA57_02500 PF02384 N-6 DNA Methylase JOA57_02500 PF12161 HsdM N-terminal domain JOA57_02505 PF00117 Glutamine amidotransferase class-I JOA57_02510 PF01613 Flavin reductase like domain JOA57_02515 PF00591 Glycosyl transferase family, a/b domain JOA57_02515 PF02885 Glycosyl transferase family, helical bundle domain JOA57_02520 PF00218 Indole-3-glycerol phosphate synthase JOA57_02530 PF00027 Cyclic nucleotide-binding domain JOA57_02530 PF00325 Bacterial regulatory proteins, crp family JOA57_02535 PF02675 S-adenosylmethionine decarboxylase JOA57_02540 PF00893 Small Multidrug Resistance protein JOA57_02545 PF03232 Ubiquinone biosynthesis protein COQ7 JOA57_02550 PF00572 Ribosomal protein L13 JOA57_02555 PF00380 Ribosomal protein S9/S16 JOA57_02570 PF00293 NUDIX domain JOA57_02580 PF00210 Ferritin-like domain JOA57_02585 PF01627 Hpt domain JOA57_02585 PF00072 Response regulator receiver domain JOA57_02585 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JOA57_02585 PF00512 His Kinase A (phospho-acceptor) domain JOA57_02585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_02585 PF00672 HAMP domain JOA57_02590 PF00072 Response regulator receiver domain JOA57_02590 PF00486 Transcriptional regulatory protein, C terminal JOA57_02610 PF01521 Iron-sulphur cluster biosynthesis JOA57_02615 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain JOA57_02615 PF00293 NUDIX domain JOA57_02615 PF09297 NADH pyrophosphatase zinc ribbon domain JOA57_02620 PF17113 Regulatory signalling modulator protein AmpE JOA57_02620 PF03186 CobD/Cbib protein JOA57_02645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_02645 PF03466 LysR substrate binding domain JOA57_02650 PF07690 Major Facilitator Superfamily JOA57_02660 PF12805 FUSC-like inner membrane protein yccS JOA57_02665 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JOA57_02665 PF02843 Phosphoribosylglycinamide synthetase, C domain JOA57_02665 PF02844 Phosphoribosylglycinamide synthetase, N domain JOA57_02675 PF01808 AICARFT/IMPCHase bienzyme JOA57_02675 PF02142 MGS-like domain JOA57_02680 PF01066 CDP-alcohol phosphatidyltransferase JOA57_02685 PF12146 Serine aminopeptidase, S33 JOA57_02685 PF12147 Putative methyltransferase JOA57_02690 PF00782 Dual specificity phosphatase, catalytic domain JOA57_02725 PF00818 Ice nucleation protein repeat JOA57_02725 PF00818 Ice nucleation protein repeat JOA57_02730 PF02954 Bacterial regulatory protein, Fis family JOA57_02740 PF01381 Helix-turn-helix JOA57_02765 PF02785 Biotin carboxylase C-terminal domain JOA57_02765 PF00289 Biotin carboxylase, N-terminal domain JOA57_02765 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JOA57_02775 PF00364 Biotin-requiring enzyme JOA57_02780 PF01220 Dehydroquinase class II JOA57_02785 PF02683 Cytochrome C biogenesis protein transmembrane region JOA57_02785 PF11412 Disulphide bond corrector protein DsbC JOA57_02795 PF04231 Endonuclease I JOA57_02800 PF00166 Chaperonin 10 Kd subunit JOA57_02805 PF00118 TCP-1/cpn60 chaperonin family JOA57_02810 PF00271 Helicase conserved C-terminal domain JOA57_02810 PF00176 SNF2 family N-terminal domain JOA57_02815 PF00270 DEAD/DEAH box helicase JOA57_02815 PF13749 Putative ATP-dependent DNA helicase recG C-terminal JOA57_02815 PF17191 RecG wedge domain JOA57_02825 PF01738 Dienelactone hydrolase family JOA57_02845 PF00593 TonB dependent receptor JOA57_02845 PF07715 TonB-dependent Receptor Plug Domain JOA57_02865 PF00793 DAHP synthetase I family JOA57_02875 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain JOA57_02875 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain JOA57_02890 PF08450 SMP-30/Gluconolactonase/LRE-like region JOA57_02905 PF16220 Domain of unknown function (DUF4880) JOA57_02905 PF04773 FecR protein JOA57_02915 PF07715 TonB-dependent Receptor Plug Domain JOA57_02915 PF07660 Secretin and TonB N terminus short domain JOA57_02915 PF00593 TonB dependent receptor JOA57_02935 PF03710 Glutamate-ammonia ligase adenylyltransferase JOA57_02935 PF08335 GlnD PII-uridylyltransferase JOA57_02950 PF02592 Putative vitamin uptake transporter JOA57_02970 PF00881 Nitroreductase family JOA57_02975 PF04264 YceI-like domain JOA57_02985 PF13847 Methyltransferase domain JOA57_02985 PF03551 Transcriptional regulator PadR-like family JOA57_02990 PF16957 Malonate decarboxylase, alpha subunit, transporter JOA57_02995 PF06857 Malonate decarboxylase delta subunit (MdcD) JOA57_03000 PF01039 Carboxyl transferase domain JOA57_03010 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG JOA57_03015 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase JOA57_03020 PF08659 KR domain JOA57_03020 PF00550 Phosphopantetheine attachment site JOA57_03020 PF00109 Beta-ketoacyl synthase, N-terminal domain JOA57_03020 PF00698 Acyl transferase domain JOA57_03020 PF16197 Ketoacyl-synthetase C-terminal extension JOA57_03020 PF02801 Beta-ketoacyl synthase, C-terminal domain JOA57_03030 PF07729 FCD domain JOA57_03030 PF00392 Bacterial regulatory proteins, gntR family JOA57_03065 PF07745 Glycosyl hydrolase family 53 JOA57_03070 PF17831 Pyruvate dehydrogenase E1 component middle domain JOA57_03070 PF00456 Transketolase, thiamine diphosphate binding domain JOA57_03075 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JOA57_03165 PF13409 Glutathione S-transferase, N-terminal domain JOA57_03190 PF11838 ERAP1-like C-terminal domain JOA57_03190 PF01433 Peptidase family M1 domain JOA57_03225 PF12823 Domain of unknown function (DUF3817) JOA57_03225 PF03176 MMPL family JOA57_03235 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region JOA57_03235 PF00326 Prolyl oligopeptidase family JOA57_03240 PF07759 Protein of unknown function (DUF1615) JOA57_03245 PF00990 Diguanylate cyclase, GGDEF domain JOA57_03250 PF02082 Transcriptional regulator JOA57_03260 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOA57_03260 PF13192 Thioredoxin domain JOA57_03290 PF00892 EamA-like transporter family JOA57_03295 PF00497 Bacterial extracellular solute-binding proteins, family 3 JOA57_03305 PF03330 Lytic transglycolase JOA57_03310 PF00553 Cellulose binding domain JOA57_03310 PF00041 Fibronectin type III domain JOA57_03310 PF01341 Glycosyl hydrolases family 6 JOA57_03320 PF00324 Amino acid permease JOA57_03325 PF01544 CorA-like Mg2+ transporter protein JOA57_03340 PF01204 Trehalase JOA57_03350 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JOA57_03350 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JOA57_03375 PF05231 MASE1 JOA57_03375 PF00563 EAL domain JOA57_03375 PF13426 PAS domain JOA57_03375 PF00990 Diguanylate cyclase, GGDEF domain JOA57_03375 PF08448 PAS fold JOA57_03375 PF08447 PAS fold JOA57_03380 PF02203 Tar ligand binding domain homologue JOA57_03380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOA57_03380 PF00672 HAMP domain JOA57_03385 PF00553 Cellulose binding domain JOA57_03385 PF00150 Cellulase (glycosyl hydrolase family 5) JOA57_03390 PF00916 Sulfate permease family JOA57_03390 PF01740 STAS domain JOA57_03395 PF00990 Diguanylate cyclase, GGDEF domain JOA57_03395 PF08448 PAS fold JOA57_03400 PF00593 TonB dependent receptor JOA57_03400 PF07660 Secretin and TonB N terminus short domain JOA57_03400 PF07715 TonB-dependent Receptor Plug Domain JOA57_03410 PF03600 Citrate transporter JOA57_03410 PF02080 TrkA-C domain JOA57_03415 PF13632 Glycosyl transferase family group 2 JOA57_03425 PF07694 5TMR of 5TMR-LYT JOA57_03425 PF06580 Histidine kinase JOA57_03430 PF04397 LytTr DNA-binding domain JOA57_03430 PF00072 Response regulator receiver domain JOA57_03435 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JOA57_03435 PF03900 Porphobilinogen deaminase, C-terminal domain JOA57_03465 PF00326 Prolyl oligopeptidase family JOA57_03465 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JOA57_03480 PF00155 Aminotransferase class I and II JOA57_03485 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JOA57_03485 PF00326 Prolyl oligopeptidase family JOA57_03490 PF04304 Protein of unknown function (DUF454) JOA57_03500 PF01678 Diaminopimelate epimerase JOA57_03510 PF00589 Phage integrase family JOA57_03510 PF02899 Phage integrase, N-terminal SAM-like domain JOA57_03525 PF00227 Proteasome subunit JOA57_03530 PF00004 ATPase family associated with various cellular activities (AAA) JOA57_03530 PF07724 AAA domain (Cdc48 subfamily) JOA57_03530 PF10431 C-terminal, D2-small domain, of ClpB protein JOA57_03545 PF13673 Acetyltransferase (GNAT) domain JOA57_03550 PF13533 Biotin-lipoyl like JOA57_03560 PF01209 ubiE/COQ5 methyltransferase family JOA57_03565 PF00990 Diguanylate cyclase, GGDEF domain JOA57_03565 PF00563 EAL domain JOA57_03565 PF03707 Bacterial signalling protein N terminal repeat JOA57_03570 PF11838 ERAP1-like C-terminal domain JOA57_03570 PF01433 Peptidase family M1 domain JOA57_03585 PF13360 PQQ-like domain JOA57_03590 PF00497 Bacterial extracellular solute-binding proteins, family 3 JOA57_03605 PF00107 Zinc-binding dehydrogenase JOA57_03605 PF08240 Alcohol dehydrogenase GroES-like domain JOA57_03610 PF07715 TonB-dependent Receptor Plug Domain JOA57_03610 PF07660 Secretin and TonB N terminus short domain JOA57_03610 PF00593 TonB dependent receptor JOA57_03620 PF01590 GAF domain JOA57_03620 PF02954 Bacterial regulatory protein, Fis family JOA57_03620 PF00158 Sigma-54 interaction domain JOA57_03625 PF00294 pfkB family carbohydrate kinase JOA57_03640 PF04085 rod shape-determining protein MreC JOA57_03650 PF03717 Penicillin-binding Protein dimerisation domain JOA57_03650 PF00905 Penicillin binding protein transpeptidase domain JOA57_03655 PF01098 Cell cycle protein JOA57_03660 PF02534 Type IV secretory system Conjugative DNA transfer JOA57_03665 PF05598 Transposase domain (DUF772) JOA57_03665 PF01609 Transposase DDE domain JOA57_03675 PF01609 Transposase DDE domain JOA57_03675 PF05598 Transposase domain (DUF772) JOA57_03690 PF00295 Glycosyl hydrolases family 28 JOA57_03695 PF13406 Transglycosylase SLT domain JOA57_03700 PF05036 Sporulation related domain JOA57_03700 PF03330 Lytic transglycolase JOA57_03705 PF00768 D-alanyl-D-alanine carboxypeptidase JOA57_03705 PF07943 Penicillin-binding protein 5, C-terminal domain JOA57_03720 PF04359 Protein of unknown function (DUF493) JOA57_03725 PF03099 Biotin/lipoate A/B protein ligase family JOA57_03730 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JOA57_03730 PF04055 Radical SAM superfamily JOA57_03735 PF00595 PDZ domain JOA57_03735 PF11818 C-terminal domain of tail specific protease (DUF3340) JOA57_03735 PF03572 Peptidase family S41 JOA57_03735 PF17804 Tail specific protease N-terminal domain JOA57_03745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_03745 PF03466 LysR substrate binding domain JOA57_03755 PF01467 Cytidylyltransferase-like JOA57_03755 PF00293 NUDIX domain JOA57_03790 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JOA57_03790 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JOA57_03795 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JOA57_03795 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JOA57_03800 PF04972 BON domain JOA57_03805 PF08446 PAS fold JOA57_03805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_03805 PF00512 His Kinase A (phospho-acceptor) domain JOA57_03805 PF00360 Phytochrome region JOA57_03805 PF01590 GAF domain JOA57_03810 PF00072 Response regulator receiver domain JOA57_03815 PF00512 His Kinase A (phospho-acceptor) domain JOA57_03815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_03820 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JOA57_03860 PF03958 Bacterial type II/III secretion system short domain JOA57_03860 PF00263 Bacterial type II and III secretion system protein JOA57_03865 PF00437 Type II/IV secretion system protein JOA57_03870 PF00482 Type II secretion system (T2SS), protein F JOA57_03875 PF08334 Type II secretion system (T2SS), protein G JOA57_03875 PF07963 Prokaryotic N-terminal methylation motif JOA57_03885 PF07963 Prokaryotic N-terminal methylation motif JOA57_03885 PF02501 Type II secretion system (T2SS), protein I JOA57_03890 PF07963 Prokaryotic N-terminal methylation motif JOA57_03890 PF11612 Type II secretion system (T2SS), protein J JOA57_03895 PF03934 Type II secretion system (T2SS), protein K JOA57_03915 PF00392 Bacterial regulatory proteins, gntR family JOA57_03915 PF07702 UTRA domain JOA57_03920 PF07690 Major Facilitator Superfamily JOA57_03925 PF00356 Bacterial regulatory proteins, lacI family JOA57_03930 PF01380 SIS domain JOA57_03935 PF01979 Amidohydrolase family JOA57_03950 PF01966 HD domain JOA57_03950 PF01743 Poly A polymerase head domain JOA57_03950 PF12627 Probable RNA and SrmB- binding site of polymerase A JOA57_03955 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain JOA57_03955 PF01464 Transglycosylase SLT domain JOA57_03960 PF07715 TonB-dependent Receptor Plug Domain JOA57_03960 PF00593 TonB dependent receptor JOA57_03965 PF00732 GMC oxidoreductase JOA57_03965 PF05199 GMC oxidoreductase JOA57_03970 PF00171 Aldehyde dehydrogenase family JOA57_03975 PF02028 BCCT, betaine/carnitine/choline family transporter JOA57_03985 PF01323 DSBA-like thioredoxin domain JOA57_03995 PF00034 Cytochrome c JOA57_04000 PF01926 50S ribosome-binding GTPase JOA57_04005 PF04107 Glutamate-cysteine ligase family 2(GCS2) JOA57_04010 PF00672 HAMP domain JOA57_04010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_04010 PF00512 His Kinase A (phospho-acceptor) domain JOA57_04015 PF00072 Response regulator receiver domain JOA57_04015 PF00486 Transcriptional regulatory protein, C terminal JOA57_04030 PF03466 LysR substrate binding domain JOA57_04030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_04035 PF02583 Metal-sensitive transcriptional repressor JOA57_04040 PF00107 Zinc-binding dehydrogenase JOA57_04040 PF08240 Alcohol dehydrogenase GroES-like domain JOA57_04045 PF04828 Glutathione-dependent formaldehyde-activating enzyme JOA57_04050 PF00756 Putative esterase JOA57_04065 PF02567 Phenazine biosynthesis-like protein JOA57_04070 PF00892 EamA-like transporter family JOA57_04080 PF02645 Uncharacterised protein, DegV family COG1307 JOA57_04120 PF01979 Amidohydrolase family JOA57_04125 PF01979 Amidohydrolase family JOA57_04140 PF00462 Glutaredoxin JOA57_04145 PF01522 Polysaccharide deacetylase JOA57_04160 PF00155 Aminotransferase class I and II JOA57_04170 PF03193 RsgA GTPase JOA57_04185 PF00128 Alpha amylase, catalytic domain JOA57_04200 PF00356 Bacterial regulatory proteins, lacI family JOA57_04205 PF00106 short chain dehydrogenase JOA57_04210 PF03600 Citrate transporter JOA57_04220 PF00486 Transcriptional regulatory protein, C terminal JOA57_04220 PF00072 Response regulator receiver domain JOA57_04225 PF08521 Two-component sensor kinase N-terminal JOA57_04225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_04225 PF00512 His Kinase A (phospho-acceptor) domain JOA57_04235 PF00072 Response regulator receiver domain JOA57_04235 PF00196 Bacterial regulatory proteins, luxR family JOA57_04245 PF00512 His Kinase A (phospho-acceptor) domain JOA57_04245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_04255 PF00375 Sodium:dicarboxylate symporter family JOA57_04260 PF00390 Malic enzyme, N-terminal domain JOA57_04260 PF03949 Malic enzyme, NAD binding domain JOA57_04260 PF01515 Phosphate acetyl/butaryl transferase JOA57_04285 PF03279 Bacterial lipid A biosynthesis acyltransferase JOA57_04290 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JOA57_04295 PF02321 Outer membrane efflux protein JOA57_04310 PF00990 Diguanylate cyclase, GGDEF domain JOA57_04310 PF00563 EAL domain JOA57_04310 PF03707 Bacterial signalling protein N terminal repeat JOA57_04310 PF13188 PAS domain JOA57_04315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_04320 PF00330 Aconitase family (aconitate hydratase) JOA57_04325 PF00694 Aconitase C-terminal domain JOA57_04330 PF08241 Methyltransferase domain JOA57_04335 PF00180 Isocitrate/isopropylmalate dehydrogenase JOA57_04340 PF00682 HMGL-like JOA57_04340 PF08502 LeuA allosteric (dimerisation) domain JOA57_04345 PF00291 Pyridoxal-phosphate dependent enzyme JOA57_04355 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JOA57_04355 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JOA57_04355 PF00205 Thiamine pyrophosphate enzyme, central domain JOA57_04360 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JOA57_04360 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JOA57_04370 PF00672 HAMP domain JOA57_04370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOA57_04370 PF02203 Tar ligand binding domain homologue JOA57_04375 PF07676 WD40-like Beta Propeller Repeat JOA57_04375 PF00326 Prolyl oligopeptidase family JOA57_04380 PF13667 ThiC-associated domain JOA57_04380 PF01964 Radical SAM ThiC family JOA57_04385 PF18500 CadC C-terminal domain 1 JOA57_04385 PF00486 Transcriptional regulatory protein, C terminal JOA57_04390 PF12833 Helix-turn-helix domain JOA57_04395 PF00593 TonB dependent receptor JOA57_04395 PF07715 TonB-dependent Receptor Plug Domain JOA57_04405 PF00719 Inorganic pyrophosphatase JOA57_04420 PF03030 Inorganic H+ pyrophosphatase JOA57_04440 PF00365 Phosphofructokinase JOA57_04450 PF02875 Mur ligase family, glutamate ligase domain JOA57_04450 PF01225 Mur ligase family, catalytic domain JOA57_04450 PF08245 Mur ligase middle domain JOA57_04460 PF01062 Bestrophin, RFP-TM, chloride channel JOA57_04465 PF01569 PAP2 superfamily JOA57_04485 PF00027 Cyclic nucleotide-binding domain JOA57_04485 PF00520 Ion transport protein JOA57_04490 PF00202 Aminotransferase class-III JOA57_04505 PF01593 Flavin containing amine oxidoreductase JOA57_04510 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JOA57_04510 PF00034 Cytochrome c JOA57_04520 PF00155 Aminotransferase class I and II JOA57_04525 PF00127 Copper binding proteins, plastocyanin/azurin family JOA57_04530 PF17874 MalT-like TPR region JOA57_04530 PF00196 Bacterial regulatory proteins, luxR family JOA57_04535 PF00202 Aminotransferase class-III JOA57_04545 PF02581 Thiamine monophosphate synthase JOA57_04550 PF00301 Rubredoxin JOA57_04555 PF13369 Transglutaminase-like superfamily JOA57_04565 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JOA57_04575 PF01812 5-formyltetrahydrofolate cyclo-ligase family JOA57_04585 PF05164 Cell division protein ZapA JOA57_04595 PF03695 Uncharacterised protein family (UPF0149) JOA57_04600 PF05195 Aminopeptidase P, N-terminal domain JOA57_04600 PF00557 Metallopeptidase family M24 JOA57_04610 PF00557 Metallopeptidase family M24 JOA57_04625 PF06969 HemN C-terminal domain JOA57_04625 PF04055 Radical SAM superfamily JOA57_04630 PF01725 Ham1 family JOA57_04635 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JOA57_04640 PF01138 3' exoribonuclease family, domain 1 JOA57_04640 PF03725 3' exoribonuclease family, domain 2 JOA57_04645 PF08340 Domain of unknown function (DUF1732) JOA57_04645 PF03755 YicC-like family, N-terminal region JOA57_04650 PF00625 Guanylate kinase JOA57_04655 PF01192 RNA polymerase Rpb6 JOA57_04660 PF04607 Region found in RelA / SpoT proteins JOA57_04660 PF02824 TGS domain JOA57_04660 PF13291 ACT domain JOA57_04670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_04670 PF03466 LysR substrate binding domain JOA57_04675 PF00701 Dihydrodipicolinate synthetase family JOA57_04680 PF00171 Aldehyde dehydrogenase family JOA57_04685 PF07690 Major Facilitator Superfamily JOA57_04690 PF13378 Enolase C-terminal domain-like JOA57_04690 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JOA57_04695 PF03573 outer membrane porin, OprD family JOA57_04700 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus JOA57_04700 PF08666 SAF domain JOA57_04705 PF01042 Endoribonuclease L-PSP JOA57_04710 PF17191 RecG wedge domain JOA57_04710 PF00271 Helicase conserved C-terminal domain JOA57_04710 PF00270 DEAD/DEAH box helicase JOA57_04715 PF01156 Inosine-uridine preferring nucleoside hydrolase JOA57_04720 PF01197 Ribosomal protein L31 JOA57_04725 PF00285 Citrate synthase, C-terminal domain JOA57_04735 PF17092 Penicillin-binding protein OB-like domain JOA57_04735 PF00912 Transglycosylase JOA57_04735 PF00905 Penicillin binding protein transpeptidase domain JOA57_04740 PF11104 Type IV pilus assembly protein PilM; JOA57_04745 PF05137 Fimbrial assembly protein (PilN) JOA57_04750 PF04350 Pilus assembly protein, PilO JOA57_04755 PF04351 Pilus assembly protein, PilP JOA57_04760 PF03958 Bacterial type II/III secretion system short domain JOA57_04760 PF07660 Secretin and TonB N terminus short domain JOA57_04760 PF00263 Bacterial type II and III secretion system protein JOA57_04760 PF11741 AMIN domain JOA57_04765 PF07726 ATPase family associated with various cellular activities (AAA) JOA57_04765 PF17863 AAA lid domain JOA57_04785 PF07584 Aerotolerance regulator N-terminal JOA57_04785 PF00092 von Willebrand factor type A domain JOA57_04795 PF00375 Sodium:dicarboxylate symporter family JOA57_04800 PF02779 Transketolase, pyrimidine binding domain JOA57_04800 PF02780 Transketolase, C-terminal domain JOA57_04800 PF00456 Transketolase, thiamine diphosphate binding domain JOA57_04805 PF12146 Serine aminopeptidase, S33 JOA57_04810 PF00593 TonB dependent receptor JOA57_04810 PF07715 TonB-dependent Receptor Plug Domain JOA57_04815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_04815 PF03466 LysR substrate binding domain JOA57_04825 PF04225 Opacity-associated protein A LysM-like domain JOA57_04825 PF01551 Peptidase family M23 JOA57_04830 PF01476 LysM domain JOA57_04830 PF03734 L,D-transpeptidase catalytic domain JOA57_04850 PF03965 Penicillinase repressor JOA57_04870 PF00005 ABC transporter JOA57_04870 PF03459 TOBE domain JOA57_04875 PF00528 Binding-protein-dependent transport system inner membrane component JOA57_04900 PF00753 Metallo-beta-lactamase superfamily JOA57_04900 PF04273 Putative phosphatase (DUF442) JOA57_04915 PF03922 OmpW family JOA57_04930 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JOA57_04930 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JOA57_04950 PF00162 Phosphoglycerate kinase JOA57_04955 PF13419 Haloacid dehalogenase-like hydrolase JOA57_04960 PF00224 Pyruvate kinase, barrel domain JOA57_04960 PF02887 Pyruvate kinase, alpha/beta domain JOA57_04965 PF00274 Fructose-bisphosphate aldolase class-I JOA57_04970 PF01661 Macro domain JOA57_04980 PF00291 Pyridoxal-phosphate dependent enzyme JOA57_04985 PF10414 Sirohaem synthase dimerisation region JOA57_04985 PF14824 Sirohaem biosynthesis protein central JOA57_04985 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JOA57_04990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_04990 PF03466 LysR substrate binding domain JOA57_05000 PF00672 HAMP domain JOA57_05000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_05000 PF00512 His Kinase A (phospho-acceptor) domain JOA57_05000 PF01627 Hpt domain JOA57_05000 PF00072 Response regulator receiver domain JOA57_05020 PF01507 Phosphoadenosine phosphosulfate reductase family JOA57_05025 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JOA57_05025 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JOA57_05030 PF00667 FAD binding domain JOA57_05030 PF00258 Flavodoxin JOA57_05030 PF00175 Oxidoreductase NAD-binding domain JOA57_05035 PF01507 Phosphoadenosine phosphosulfate reductase family JOA57_05040 PF00009 Elongation factor Tu GTP binding domain JOA57_05045 PF00529 HlyD membrane-fusion protein of T1SS JOA57_05045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOA57_05050 PF00873 AcrB/AcrD/AcrF family JOA57_05055 PF11838 ERAP1-like C-terminal domain JOA57_05055 PF01433 Peptidase family M1 domain JOA57_05065 PF01235 Sodium:alanine symporter family JOA57_05070 PF08032 RNA 2'-O ribose methyltransferase substrate binding JOA57_05070 PF00588 SpoU rRNA Methylase family JOA57_05075 PF00135 Carboxylesterase family JOA57_05085 PF05598 Transposase domain (DUF772) JOA57_05085 PF01609 Transposase DDE domain JOA57_05090 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation JOA57_05090 PF14508 Glycosyl-hydrolase 97 N-terminal JOA57_05090 PF10566 Glycoside hydrolase 97 JOA57_05095 PF02929 Beta galactosidase small chain JOA57_05095 PF16353 Domain of unknown function(DUF4981) JOA57_05095 PF00703 Glycosyl hydrolases family 2 JOA57_05095 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JOA57_05095 PF02837 Glycosyl hydrolases family 2, sugar binding domain JOA57_05105 PF01341 Glycosyl hydrolases family 6 JOA57_05105 PF00041 Fibronectin type III domain JOA57_05105 PF00553 Cellulose binding domain JOA57_05110 PF00356 Bacterial regulatory proteins, lacI family JOA57_05125 PF01741 Large-conductance mechanosensitive channel, MscL JOA57_05130 PF01557 Fumarylacetoacetate (FAA) hydrolase family JOA57_05145 PF03600 Citrate transporter JOA57_05145 PF02080 TrkA-C domain JOA57_05150 PF02390 Putative methyltransferase JOA57_05155 PF05690 Thiazole biosynthesis protein ThiG JOA57_05165 PF03797 Autotransporter beta-domain JOA57_05165 PF00657 GDSL-like Lipase/Acylhydrolase JOA57_05175 PF14659 Phage integrase, N-terminal SAM-like domain JOA57_05175 PF00589 Phage integrase family JOA57_05175 PF13356 Arm DNA-binding domain JOA57_05195 PF01381 Helix-turn-helix JOA57_05200 PF03466 LysR substrate binding domain JOA57_05200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_05215 PF05598 Transposase domain (DUF772) JOA57_05215 PF01609 Transposase DDE domain JOA57_05245 PF04610 TrbL/VirB6 plasmid conjugal transfer protein JOA57_05260 PF01609 Transposase DDE domain JOA57_05260 PF05598 Transposase domain (DUF772) JOA57_05280 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JOA57_05280 PF00128 Alpha amylase, catalytic domain JOA57_05285 PF18030 RimK PreATP-grasp domain JOA57_05285 PF08443 RimK-like ATP-grasp domain JOA57_05290 PF00072 Response regulator receiver domain JOA57_05290 PF00486 Transcriptional regulatory protein, C terminal JOA57_05295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_05295 PF00989 PAS fold JOA57_05295 PF11808 Phosphate regulon sensor protein PhoR JOA57_05295 PF00512 His Kinase A (phospho-acceptor) domain JOA57_05315 PF01121 Dephospho-CoA kinase JOA57_05320 PF01478 Type IV leader peptidase family JOA57_05320 PF06750 Bacterial Peptidase A24 N-terminal domain JOA57_05325 PF00482 Type II secretion system (T2SS), protein F JOA57_05330 PF00114 Pilin (bacterial filament) JOA57_05330 PF07963 Prokaryotic N-terminal methylation motif JOA57_05335 PF07963 Prokaryotic N-terminal methylation motif JOA57_05335 PF00114 Pilin (bacterial filament) JOA57_05340 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JOA57_05340 PF00437 Type II/IV secretion system protein JOA57_05350 PF00072 Response regulator receiver domain JOA57_05350 PF02954 Bacterial regulatory protein, Fis family JOA57_05350 PF00158 Sigma-54 interaction domain JOA57_05355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_05355 PF00512 His Kinase A (phospho-acceptor) domain JOA57_05360 PF08442 ATP-grasp domain JOA57_05360 PF00549 CoA-ligase JOA57_05365 PF00549 CoA-ligase JOA57_05365 PF02629 CoA binding domain JOA57_05380 PF00795 Carbon-nitrogen hydrolase JOA57_05380 PF02540 NAD synthase JOA57_05390 PF13525 Outer membrane lipoprotein JOA57_05395 PF00849 RNA pseudouridylate synthase JOA57_05400 PF02578 Multi-copper polyphenol oxidoreductase laccase JOA57_05415 PF02203 Tar ligand binding domain homologue JOA57_05415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOA57_05415 PF00672 HAMP domain JOA57_05420 PF01011 PQQ enzyme repeat JOA57_05425 PF00982 Glycosyltransferase family 20 JOA57_05430 PF00723 Glycosyl hydrolases family 15 JOA57_05435 PF02358 Trehalose-phosphatase JOA57_05440 PF07715 TonB-dependent Receptor Plug Domain JOA57_05440 PF00593 TonB dependent receptor JOA57_05475 PF01541 GIY-YIG catalytic domain JOA57_05480 PF00005 ABC transporter JOA57_05485 PF02861 Clp amino terminal domain, pathogenicity island component JOA57_05485 PF00004 ATPase family associated with various cellular activities (AAA) JOA57_05485 PF07724 AAA domain (Cdc48 subfamily) JOA57_05485 PF17871 AAA lid domain JOA57_05485 PF10431 C-terminal, D2-small domain, of ClpB protein JOA57_05495 PF01053 Cys/Met metabolism PLP-dependent enzyme JOA57_05500 PF00593 TonB dependent receptor JOA57_05500 PF07715 TonB-dependent Receptor Plug Domain JOA57_05515 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP JOA57_05515 PF12557 Cob(I)alamin adenosyltransferase N terminal JOA57_05520 PF07685 CobB/CobQ-like glutamine amidotransferase domain JOA57_05520 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JOA57_05525 PF17113 Regulatory signalling modulator protein AmpE JOA57_05525 PF03186 CobD/Cbib protein JOA57_05530 PF00155 Aminotransferase class I and II JOA57_05535 PF07685 CobB/CobQ-like glutamine amidotransferase domain JOA57_05535 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JOA57_05540 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase JOA57_05545 PF02277 Phosphoribosyltransferase JOA57_05555 PF02654 Cobalamin-5-phosphate synthase JOA57_05575 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JOA57_05575 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JOA57_05580 PF06276 Ferric iron reductase FhuF-like transporter JOA57_05580 PF04183 IucA / IucC family JOA57_05585 PF07690 Major Facilitator Superfamily JOA57_05590 PF06276 Ferric iron reductase FhuF-like transporter JOA57_05590 PF04183 IucA / IucC family JOA57_05600 PF00593 TonB dependent receptor JOA57_05600 PF07715 TonB-dependent Receptor Plug Domain JOA57_05600 PF07660 Secretin and TonB N terminus short domain JOA57_05610 PF00999 Sodium/hydrogen exchanger family JOA57_05610 PF02254 TrkA-N domain JOA57_05615 PF00067 Cytochrome P450 JOA57_05620 PF07715 TonB-dependent Receptor Plug Domain JOA57_05620 PF00593 TonB dependent receptor JOA57_05625 PF00593 TonB dependent receptor JOA57_05625 PF07715 TonB-dependent Receptor Plug Domain JOA57_05635 PF07715 TonB-dependent Receptor Plug Domain JOA57_05635 PF00593 TonB dependent receptor JOA57_05640 PF00005 ABC transporter JOA57_05640 PF12848 ABC transporter JOA57_05650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_05650 PF03466 LysR substrate binding domain JOA57_05660 PF07859 alpha/beta hydrolase fold JOA57_05660 PF13472 GDSL-like Lipase/Acylhydrolase family JOA57_05665 PF05506 Domain of unknown function (DUF756) JOA57_05665 PF04185 Phosphoesterase family JOA57_05675 PF05116 Sucrose-6F-phosphate phosphohydrolase JOA57_05675 PF00982 Glycosyltransferase family 20 JOA57_05680 PF07690 Major Facilitator Superfamily JOA57_05705 PF01336 OB-fold nucleic acid binding domain JOA57_05705 PF00152 tRNA synthetases class II (D, K and N) JOA57_05705 PF02938 GAD domain JOA57_05720 PF01709 Transcriptional regulator JOA57_05725 PF02075 Crossover junction endodeoxyribonuclease RuvC JOA57_05730 PF07499 RuvA, C-terminal domain JOA57_05730 PF01330 RuvA N terminal domain JOA57_05735 PF02705 K+ potassium transporter JOA57_05745 PF05496 Holliday junction DNA helicase RuvB P-loop domain JOA57_05745 PF17864 RuvB AAA lid domain JOA57_05745 PF05491 RuvB C-terminal winged helix domain JOA57_05750 PF03061 Thioesterase superfamily JOA57_05755 PF01618 MotA/TolQ/ExbB proton channel family JOA57_05760 PF02472 Biopolymer transport protein ExbD/TolR JOA57_05770 PF07676 WD40-like Beta Propeller Repeat JOA57_05770 PF04052 TolB amino-terminal domain JOA57_05775 PF00691 OmpA family JOA57_05785 PF04055 Radical SAM superfamily JOA57_05790 PF06508 Queuosine biosynthesis protein QueC JOA57_05825 PF00654 Voltage gated chloride channel JOA57_05830 PF03466 LysR substrate binding domain JOA57_05830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_05835 PF01810 LysE type translocator JOA57_05855 PF01479 S4 domain JOA57_05855 PF00849 RNA pseudouridylate synthase JOA57_05870 PF00570 HRDC domain JOA57_05870 PF00270 DEAD/DEAH box helicase JOA57_05870 PF00271 Helicase conserved C-terminal domain JOA57_05870 PF16124 RecQ zinc-binding JOA57_05870 PF09382 RQC domain JOA57_05875 PF00210 Ferritin-like domain JOA57_05880 PF11898 Domain of unknown function (DUF3418) JOA57_05880 PF04408 Helicase associated domain (HA2) JOA57_05880 PF00271 Helicase conserved C-terminal domain JOA57_05880 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JOA57_05880 PF00270 DEAD/DEAH box helicase JOA57_05890 PF02685 Glucokinase JOA57_05905 PF04055 Radical SAM superfamily JOA57_05905 PF13186 Iron-sulfur cluster-binding domain JOA57_05910 PF05402 Coenzyme PQQ synthesis protein D (PqqD) JOA57_05915 PF03070 TENA/THI-4/PQQC family JOA57_05920 PF12706 Beta-lactamase superfamily domain JOA57_05925 PF08042 PqqA family JOA57_05930 PF02824 TGS domain JOA57_05930 PF04607 Region found in RelA / SpoT proteins JOA57_05930 PF13291 ACT domain JOA57_05940 PF00535 Glycosyl transferase family 2 JOA57_05945 PF14814 Bifunctional transglycosylase second domain JOA57_05945 PF00905 Penicillin binding protein transpeptidase domain JOA57_05945 PF00912 Transglycosylase JOA57_05955 PF13307 Helicase C-terminal domain JOA57_05955 PF04851 Type III restriction enzyme, res subunit JOA57_05965 PF00814 Glycoprotease family JOA57_05970 PF03747 ADP-ribosylglycohydrolase JOA57_05980 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JOA57_05980 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JOA57_05985 PF00072 Response regulator receiver domain JOA57_05990 PF00072 Response regulator receiver domain JOA57_05995 PF01584 CheW-like domain JOA57_06000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOA57_06000 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term JOA57_06005 PF00072 Response regulator receiver domain JOA57_06005 PF01584 CheW-like domain JOA57_06005 PF02895 Signal transducing histidine kinase, homodimeric domain JOA57_06005 PF01627 Hpt domain JOA57_06005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_06020 PF13302 Acetyltransferase (GNAT) domain JOA57_06030 PF04542 Sigma-70 region 2 JOA57_06030 PF08281 Sigma-70, region 4 JOA57_06035 PF12450 von Willebrand factor JOA57_06035 PF00092 von Willebrand factor type A domain JOA57_06035 PF12034 Domain of unknown function (DUF3520) JOA57_06040 PF01112 Asparaginase JOA57_06045 PF03932 CutC family JOA57_06060 PF00067 Cytochrome P450 JOA57_06095 PF18766 SWI2/SNF2 ATPase JOA57_06095 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JOA57_06095 PF11867 Domain of unknown function (DUF3387) JOA57_06115 PF02384 N-6 DNA Methylase JOA57_06115 PF12161 HsdM N-terminal domain JOA57_06145 PF01301 Glycosyl hydrolases family 35 JOA57_06150 PF17678 Glycosyl hydrolase family 92 N-terminal domain JOA57_06150 PF07971 Glycosyl hydrolase family 92 JOA57_06160 PF14310 Fibronectin type III-like domain JOA57_06160 PF00933 Glycosyl hydrolase family 3 N terminal domain JOA57_06160 PF01915 Glycosyl hydrolase family 3 C-terminal domain JOA57_06160 PF07691 PA14 domain JOA57_06170 PF00728 Glycosyl hydrolase family 20, catalytic domain JOA57_06170 PF02838 Glycosyl hydrolase family 20, domain 2 JOA57_06170 PF07691 PA14 domain JOA57_06175 PF00704 Glycosyl hydrolases family 18 JOA57_06175 PF01476 LysM domain JOA57_06195 PF02685 Glucokinase JOA57_06200 PF04452 RNA methyltransferase JOA57_06205 PF00202 Aminotransferase class-III JOA57_06210 PF00293 NUDIX domain JOA57_06215 PF00459 Inositol monophosphatase family JOA57_06220 PF03819 MazG nucleotide pyrophosphohydrolase domain JOA57_06225 PF02694 Uncharacterised BCR, YnfA/UPF0060 family JOA57_06230 PF01145 SPFH domain / Band 7 family JOA57_06230 PF16200 C-terminal region of band_7 JOA57_06240 PF01571 Aminomethyltransferase folate-binding domain JOA57_06240 PF08669 Glycine cleavage T-protein C-terminal barrel domain JOA57_06245 PF01597 Glycine cleavage H-protein JOA57_06275 PF02770 Acyl-CoA dehydrogenase, middle domain JOA57_06275 PF09317 Domain of unknown function (DUF1974) JOA57_06275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JOA57_06275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JOA57_06285 PF00440 Bacterial regulatory proteins, tetR family JOA57_06290 PF07715 TonB-dependent Receptor Plug Domain JOA57_06290 PF00593 TonB dependent receptor JOA57_06300 PF01430 Hsp33 protein JOA57_06305 PF00912 Transglycosylase JOA57_06310 PF00535 Glycosyl transferase family 2 JOA57_06315 PF00571 CBS domain JOA57_06315 PF00478 IMP dehydrogenase / GMP reductase domain JOA57_06320 PF05170 AsmA family JOA57_06325 PF03006 Haemolysin-III related JOA57_06330 PF00009 Elongation factor Tu GTP binding domain JOA57_06330 PF16658 Class II release factor RF3, C-terminal domain JOA57_06335 PF08460 Bacterial SH3 domain JOA57_06335 PF01551 Peptidase family M23 JOA57_06340 PF00561 alpha/beta hydrolase fold JOA57_06345 PF01053 Cys/Met metabolism PLP-dependent enzyme JOA57_06350 PF00742 Homoserine dehydrogenase JOA57_06350 PF00696 Amino acid kinase family JOA57_06350 PF03447 Homoserine dehydrogenase, NAD binding domain JOA57_06355 PF12697 Alpha/beta hydrolase family JOA57_06365 PF03313 Serine dehydratase alpha chain JOA57_06365 PF03315 Serine dehydratase beta chain JOA57_06385 PF04264 YceI-like domain JOA57_06390 PF00072 Response regulator receiver domain JOA57_06390 PF01627 Hpt domain JOA57_06390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_06390 PF17149 Periplasmic sensor domain found in signal transduction proteins JOA57_06390 PF00512 His Kinase A (phospho-acceptor) domain JOA57_06390 PF00672 HAMP domain JOA57_06395 PF17149 Periplasmic sensor domain found in signal transduction proteins JOA57_06395 PF00672 HAMP domain JOA57_06395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_06395 PF01627 Hpt domain JOA57_06395 PF00072 Response regulator receiver domain JOA57_06395 PF00512 His Kinase A (phospho-acceptor) domain JOA57_06400 PF00672 HAMP domain JOA57_06400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_06400 PF00512 His Kinase A (phospho-acceptor) domain JOA57_06400 PF01627 Hpt domain JOA57_06400 PF00072 Response regulator receiver domain JOA57_06400 PF17149 Periplasmic sensor domain found in signal transduction proteins JOA57_06405 PF07690 Major Facilitator Superfamily JOA57_06415 PF01208 Uroporphyrinogen decarboxylase (URO-D) JOA57_06425 PF01761 3-dehydroquinate synthase JOA57_06430 PF01202 Shikimate kinase JOA57_06435 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JOA57_06435 PF01243 Pyridoxamine 5'-phosphate oxidase JOA57_06445 PF04012 PspA/IM30 family JOA57_06470 PF03738 Glutathionylspermidine synthase preATP-grasp JOA57_06485 PF07690 Major Facilitator Superfamily JOA57_06490 PF09278 MerR, DNA binding JOA57_06490 PF00376 MerR family regulatory protein JOA57_06515 PF04820 Tryptophan halogenase JOA57_06540 PF01339 CheB methylesterase JOA57_06540 PF00072 Response regulator receiver domain JOA57_06550 PF00324 Amino acid permease JOA57_06555 PF00196 Bacterial regulatory proteins, luxR family JOA57_06560 PF00561 alpha/beta hydrolase fold JOA57_06570 PF00544 Pectate lyase JOA57_06575 PF00324 Amino acid permease JOA57_06580 PF01654 Cytochrome bd terminal oxidase subunit I JOA57_06585 PF02322 Cytochrome bd terminal oxidase subunit II JOA57_06590 PF00756 Putative esterase JOA57_06595 PF00571 CBS domain JOA57_06595 PF01769 Divalent cation transporter JOA57_06595 PF03448 MgtE intracellular N domain JOA57_06600 PF00391 PEP-utilising enzyme, mobile domain JOA57_06600 PF05524 PEP-utilising enzyme, N-terminal JOA57_06600 PF02896 PEP-utilising enzyme, TIM barrel domain JOA57_06605 PF00381 PTS HPr component phosphorylation site JOA57_06615 PF03668 P-loop ATPase protein family JOA57_06620 PF07475 HPr Serine kinase C-terminal domain JOA57_06620 PF02603 HPr Serine kinase N terminus JOA57_06625 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JOA57_06630 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JOA57_06635 PF00309 Sigma-54 factor, Activator interacting domain (AID) JOA57_06635 PF04963 Sigma-54 factor, core binding domain JOA57_06635 PF04552 Sigma-54, DNA binding domain JOA57_06640 PF00005 ABC transporter JOA57_06660 PF00571 CBS domain JOA57_06660 PF01380 SIS domain JOA57_06665 PF01722 BolA-like protein JOA57_06670 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JOA57_06690 PF00551 Formyl transferase JOA57_06700 PF00586 AIR synthase related protein, N-terminal domain JOA57_06700 PF02769 AIR synthase related protein, C-terminal domain JOA57_06710 PF01594 AI-2E family transporter JOA57_06715 PF00308 Bacterial dnaA protein JOA57_06720 PF00483 Nucleotidyl transferase JOA57_06725 PF01636 Phosphotransferase enzyme family JOA57_06735 PF07687 Peptidase dimerisation domain JOA57_06735 PF01546 Peptidase family M20/M25/M40 JOA57_06750 PF00667 FAD binding domain JOA57_06750 PF00258 Flavodoxin JOA57_06750 PF00175 Oxidoreductase NAD-binding domain JOA57_06755 PF02424 ApbE family JOA57_06780 PF13640 2OG-Fe(II) oxygenase superfamily JOA57_06780 PF18331 PKHD-type hydroxylase C-terminal domain JOA57_06785 PF00593 TonB dependent receptor JOA57_06785 PF07715 TonB-dependent Receptor Plug Domain JOA57_06790 PF00355 Rieske [2Fe-2S] domain JOA57_06800 PF00266 Aminotransferase class-V JOA57_06805 PF01458 Uncharacterized protein family (UPF0051) JOA57_06810 PF00005 ABC transporter JOA57_06815 PF01458 Uncharacterized protein family (UPF0051) JOA57_06860 PF03807 NADP oxidoreductase coenzyme F420-dependent JOA57_06860 PF14748 Pyrroline-5-carboxylate reductase dimerisation JOA57_06865 PF01168 Alanine racemase, N-terminal domain JOA57_06870 PF00437 Type II/IV secretion system protein JOA57_06875 PF00437 Type II/IV secretion system protein JOA57_06895 PF13673 Acetyltransferase (GNAT) domain JOA57_06895 PF13302 Acetyltransferase (GNAT) domain JOA57_06895 PF03352 Methyladenine glycosylase JOA57_06895 PF00117 Glutamine amidotransferase class-I JOA57_06895 PF00958 GMP synthase C terminal domain JOA57_06900 PF13687 Domain of unknown function (DUF4153) JOA57_06905 PF02622 Uncharacterized ACR, COG1678 JOA57_06910 PF03652 Holliday junction resolvase JOA57_06915 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JOA57_06915 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JOA57_06920 PF02566 OsmC-like protein JOA57_06930 PF02567 Phenazine biosynthesis-like protein JOA57_06935 PF02567 Phenazine biosynthesis-like protein JOA57_06940 PF01842 ACT domain JOA57_06940 PF00696 Amino acid kinase family JOA57_06955 PF08245 Mur ligase middle domain JOA57_06965 PF00348 Polyprenyl synthetase JOA57_06970 PF00436 Single-strand binding protein family JOA57_06985 PF05598 Transposase domain (DUF772) JOA57_06985 PF01609 Transposase DDE domain JOA57_07010 PF00563 EAL domain JOA57_07010 PF01590 GAF domain JOA57_07010 PF00990 Diguanylate cyclase, GGDEF domain JOA57_07010 PF00360 Phytochrome region JOA57_07015 PF00107 Zinc-binding dehydrogenase JOA57_07015 PF08240 Alcohol dehydrogenase GroES-like domain JOA57_07020 PF10518 TAT (twin-arginine translocation) pathway signal sequence JOA57_07020 PF01799 [2Fe-2S] binding domain JOA57_07020 PF00111 2Fe-2S iron-sulfur cluster binding domain JOA57_07025 PF03450 CO dehydrogenase flavoprotein C-terminal domain JOA57_07025 PF00941 FAD binding domain in molybdopterin dehydrogenase JOA57_07030 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JOA57_07030 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JOA57_07035 PF13478 XdhC Rossmann domain JOA57_07035 PF02625 XdhC and CoxI family JOA57_07040 PF12804 MobA-like NTP transferase domain JOA57_07070 PF04328 Selenoprotein, putative JOA57_07075 PF13722 5TM C-terminal transporter carbon starvation CstA JOA57_07075 PF02554 Carbon starvation protein CstA JOA57_07080 PF02678 Pirin JOA57_07080 PF05726 Pirin C-terminal cupin domain JOA57_07100 PF02678 Pirin JOA57_07100 PF05726 Pirin C-terminal cupin domain JOA57_07105 PF04493 Endonuclease V JOA57_07110 PF00300 Histidine phosphatase superfamily (branch 1) JOA57_07120 PF01431 Peptidase family M13 JOA57_07120 PF05649 Peptidase family M13 JOA57_07125 PF13091 PLD-like domain JOA57_07130 PF01339 CheB methylesterase JOA57_07130 PF00072 Response regulator receiver domain JOA57_07135 PF03705 CheR methyltransferase, all-alpha domain JOA57_07135 PF01739 CheR methyltransferase, SAM binding domain JOA57_07140 PF00563 EAL domain JOA57_07140 PF13426 PAS domain JOA57_07140 PF00990 Diguanylate cyclase, GGDEF domain JOA57_07145 PF01584 CheW-like domain JOA57_07150 PF02203 Tar ligand binding domain homologue JOA57_07150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOA57_07150 PF00672 HAMP domain JOA57_07155 PF01584 CheW-like domain JOA57_07155 PF09078 CheY binding JOA57_07155 PF02895 Signal transducing histidine kinase, homodimeric domain JOA57_07155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_07155 PF01627 Hpt domain JOA57_07165 PF02559 CarD-like/TRCF domain JOA57_07165 PF00270 DEAD/DEAH box helicase JOA57_07165 PF00271 Helicase conserved C-terminal domain JOA57_07165 PF03461 TRCF domain JOA57_07165 PF17757 UvrB interaction domain JOA57_07180 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JOA57_07185 PF00486 Transcriptional regulatory protein, C terminal JOA57_07185 PF00072 Response regulator receiver domain JOA57_07190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_07190 PF00672 HAMP domain JOA57_07190 PF00512 His Kinase A (phospho-acceptor) domain JOA57_07195 PF06123 Inner membrane protein CreD JOA57_07225 PF00749 tRNA synthetases class I (E and Q), catalytic domain JOA57_07230 PF01475 Ferric uptake regulator family JOA57_07245 PF00529 HlyD membrane-fusion protein of T1SS JOA57_07245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOA57_07250 PF00873 AcrB/AcrD/AcrF family JOA57_07255 PF02321 Outer membrane efflux protein JOA57_07260 PF16859 Tetracyclin repressor-like, C-terminal domain JOA57_07260 PF00440 Bacterial regulatory proteins, tetR family JOA57_07265 PF00248 Aldo/keto reductase family JOA57_07270 PF03466 LysR substrate binding domain JOA57_07270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_07280 PF12833 Helix-turn-helix domain JOA57_07280 PF06719 AraC-type transcriptional regulator N-terminus JOA57_07300 PF03466 LysR substrate binding domain JOA57_07300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_07305 PF07690 Major Facilitator Superfamily JOA57_07325 PF13860 FlgD Ig-like domain JOA57_07325 PF05922 Peptidase inhibitor I9 JOA57_07325 PF02225 PA domain JOA57_07325 PF00082 Subtilase family JOA57_07335 PF12838 4Fe-4S dicluster domain JOA57_07335 PF01568 Molydopterin dinucleotide binding domain JOA57_07335 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JOA57_07335 PF00384 Molybdopterin oxidoreductase JOA57_07335 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JOA57_07345 PF01654 Cytochrome bd terminal oxidase subunit I JOA57_07350 PF02322 Cytochrome bd terminal oxidase subunit II JOA57_07365 PF07715 TonB-dependent Receptor Plug Domain JOA57_07365 PF00593 TonB dependent receptor JOA57_07380 PF00654 Voltage gated chloride channel JOA57_07390 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JOA57_07390 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JOA57_07420 PF01494 FAD binding domain JOA57_07445 PF00271 Helicase conserved C-terminal domain JOA57_07445 PF00270 DEAD/DEAH box helicase JOA57_07445 PF03880 DbpA RNA binding domain JOA57_07450 PF08448 PAS fold JOA57_07450 PF00990 Diguanylate cyclase, GGDEF domain JOA57_07450 PF00563 EAL domain JOA57_07455 PF00849 RNA pseudouridylate synthase JOA57_07455 PF01479 S4 domain JOA57_07470 PF03737 Aldolase/RraA JOA57_07475 PF00144 Beta-lactamase JOA57_07480 PF00999 Sodium/hydrogen exchanger family JOA57_07485 PF00005 ABC transporter JOA57_07485 PF00664 ABC transporter transmembrane region JOA57_07520 PF01022 Bacterial regulatory protein, arsR family JOA57_07525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_07525 PF03466 LysR substrate binding domain JOA57_07540 PF04070 Domain of unknown function (DUF378) JOA57_07550 PF00085 Thioredoxin JOA57_07560 PF13603 Leucyl-tRNA synthetase, Domain 2 JOA57_07560 PF08264 Anticodon-binding domain of tRNA JOA57_07560 PF00133 tRNA synthetases class I (I, L, M and V) JOA57_07575 PF01467 Cytidylyltransferase-like JOA57_07590 PF02590 Predicted SPOUT methyltransferase JOA57_07605 PF04402 Protein of unknown function (DUF541) JOA57_07610 PF02545 Maf-like protein JOA57_07615 PF00575 S1 RNA binding domain JOA57_07615 PF10150 Ribonuclease E/G family JOA57_07620 PF13116 Protein of unknown function JOA57_07620 PF13502 AsmA-like C-terminal region JOA57_07630 PF01523 Putative modulator of DNA gyrase JOA57_07635 PF04751 Protein of unknown function (DUF615) JOA57_07640 PF01523 Putative modulator of DNA gyrase JOA57_07660 PF00348 Polyprenyl synthetase JOA57_07665 PF02609 Exonuclease VII small subunit JOA57_07670 PF01171 PP-loop family JOA57_07670 PF09179 TilS substrate binding domain JOA57_07670 PF11734 TilS substrate C-terminal domain JOA57_07675 PF00245 Alkaline phosphatase JOA57_07680 PF00375 Sodium:dicarboxylate symporter family JOA57_07700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_07700 PF00512 His Kinase A (phospho-acceptor) domain JOA57_07730 PF00877 NlpC/P60 family JOA57_07735 PF00877 NlpC/P60 family JOA57_07740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JOA57_07745 PF04235 Protein of unknown function (DUF418) JOA57_07750 PF01266 FAD dependent oxidoreductase JOA57_07755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JOA57_07755 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOA57_07775 PF05649 Peptidase family M13 JOA57_07775 PF01431 Peptidase family M13 JOA57_07780 PF05649 Peptidase family M13 JOA57_07780 PF01431 Peptidase family M13 JOA57_07795 PF07715 TonB-dependent Receptor Plug Domain JOA57_07795 PF00593 TonB dependent receptor JOA57_07800 PF10609 NUBPL iron-transfer P-loop NTPase JOA57_07805 PF00692 dUTPase JOA57_07825 PF01738 Dienelactone hydrolase family JOA57_07830 PF02661 Fic/DOC family JOA57_07835 PF00919 Uncharacterized protein family UPF0004 JOA57_07835 PF18693 TRAM domain JOA57_07835 PF04055 Radical SAM superfamily JOA57_07840 PF03449 Transcription elongation factor, N-terminal JOA57_07840 PF01272 Transcription elongation factor, GreA/GreB, C-term JOA57_07855 PF00293 NUDIX domain JOA57_07870 PF05872 Bacterial protein of unknown function (DUF853) JOA57_07885 PF02666 Phosphatidylserine decarboxylase JOA57_07890 PF02630 SCO1/SenC JOA57_07895 PF05175 Methyltransferase small domain JOA57_07905 PF01264 Chorismate synthase JOA57_07910 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JOA57_07910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JOA57_07915 PF02774 Semialdehyde dehydrogenase, dimerisation domain JOA57_07915 PF01118 Semialdehyde dehydrogenase, NAD binding domain JOA57_07930 PF01416 tRNA pseudouridine synthase JOA57_07935 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JOA57_07940 PF03466 LysR substrate binding domain JOA57_07940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_07945 PF00291 Pyridoxal-phosphate dependent enzyme JOA57_07955 PF00290 Tryptophan synthase alpha chain JOA57_07960 PF01039 Carboxyl transferase domain JOA57_07960 PF17848 Acetyl-coA carboxylase zinc finger domain JOA57_07965 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JOA57_07965 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JOA57_07965 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JOA57_07965 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JOA57_07980 PF03707 Bacterial signalling protein N terminal repeat JOA57_07980 PF00990 Diguanylate cyclase, GGDEF domain JOA57_07980 PF00563 EAL domain JOA57_07990 PF01152 Bacterial-like globin JOA57_08005 PF00106 short chain dehydrogenase JOA57_08010 PF00121 Triosephosphate isomerase JOA57_08025 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JOA57_08030 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JOA57_08035 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JOA57_08040 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JOA57_08050 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JOA57_08050 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JOA57_08050 PF10531 SLBB domain JOA57_08055 PF00384 Molybdopterin oxidoreductase JOA57_08055 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JOA57_08055 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal JOA57_08060 PF00146 NADH dehydrogenase JOA57_08065 PF12838 4Fe-4S dicluster domain JOA57_08070 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JOA57_08075 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JOA57_08080 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JOA57_08080 PF00361 Proton-conducting membrane transporter JOA57_08085 PF00361 Proton-conducting membrane transporter JOA57_08085 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus JOA57_08090 PF00361 Proton-conducting membrane transporter JOA57_08100 PF17384 RimP C-terminal SH3 domain JOA57_08100 PF02576 RimP N-terminal domain JOA57_08105 PF13184 NusA-like KH domain JOA57_08105 PF08529 NusA N-terminal domain JOA57_08105 PF00575 S1 RNA binding domain JOA57_08110 PF08364 Bacterial translation initiation factor IF-2 associated region JOA57_08110 PF00009 Elongation factor Tu GTP binding domain JOA57_08110 PF11987 Translation-initiation factor 2 JOA57_08110 PF04760 Translation initiation factor IF-2, N-terminal region JOA57_08115 PF02033 Ribosome-binding factor A JOA57_08120 PF01509 TruB family pseudouridylate synthase (N terminal domain) JOA57_08120 PF16198 tRNA pseudouridylate synthase B C-terminal domain JOA57_08120 PF09157 Pseudouridine synthase II TruB, C-terminal JOA57_08125 PF00312 Ribosomal protein S15 JOA57_08130 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JOA57_08130 PF01138 3' exoribonuclease family, domain 1 JOA57_08130 PF00013 KH domain JOA57_08130 PF03725 3' exoribonuclease family, domain 2 JOA57_08130 PF00575 S1 RNA binding domain JOA57_08140 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JOA57_08140 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JOA57_08150 PF00731 AIR carboxylase JOA57_08155 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JOA57_08155 PF02222 ATP-grasp domain JOA57_08160 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JOA57_08160 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JOA57_08165 PF00462 Glutaredoxin JOA57_08175 PF01914 MarC family integral membrane protein JOA57_08180 PF00593 TonB dependent receptor JOA57_08185 PF11892 Domain of unknown function (DUF3412) JOA57_08185 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases JOA57_08185 PF03641 Possible lysine decarboxylase JOA57_08190 PF07963 Prokaryotic N-terminal methylation motif JOA57_08210 PF05567 Neisseria PilC beta-propeller domain JOA57_08225 PF07963 Prokaryotic N-terminal methylation motif JOA57_08225 PF00114 Pilin (bacterial filament) JOA57_08230 PF17757 UvrB interaction domain JOA57_08230 PF02151 UvrB/uvrC motif JOA57_08230 PF12344 Ultra-violet resistance protein B JOA57_08230 PF00271 Helicase conserved C-terminal domain JOA57_08230 PF04851 Type III restriction enzyme, res subunit JOA57_08245 PF02534 Type IV secretory system Conjugative DNA transfer JOA57_08265 PF03743 Bacterial conjugation TrbI-like protein JOA57_08270 PF00437 Type II/IV secretion system protein JOA57_08275 PF01464 Transglycosylase SLT domain JOA57_08285 PF05101 Type IV secretory pathway, VirB3-like protein JOA57_08290 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JOA57_08305 PF00128 Alpha amylase, catalytic domain JOA57_08325 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation JOA57_08325 PF14508 Glycosyl-hydrolase 97 N-terminal JOA57_08325 PF10566 Glycoside hydrolase 97 JOA57_08335 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JOA57_08340 PF00686 Starch binding domain JOA57_08340 PF00128 Alpha amylase, catalytic domain JOA57_08345 PF00356 Bacterial regulatory proteins, lacI family JOA57_08350 PF02824 TGS domain JOA57_08350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JOA57_08350 PF03129 Anticodon binding domain JOA57_08350 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JOA57_08355 PF05198 Translation initiation factor IF-3, N-terminal domain JOA57_08355 PF00707 Translation initiation factor IF-3, C-terminal domain JOA57_08360 PF01632 Ribosomal protein L35 JOA57_08365 PF00453 Ribosomal protein L20 JOA57_08370 PF01409 tRNA synthetases class II core domain (F) JOA57_08370 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JOA57_08375 PF03147 Ferredoxin-fold anticodon binding domain JOA57_08375 PF03483 B3/4 domain JOA57_08375 PF01588 Putative tRNA binding domain JOA57_08375 PF03484 tRNA synthetase B5 domain JOA57_08375 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JOA57_08380 PF00216 Bacterial DNA-binding protein JOA57_08385 PF13411 MerR HTH family regulatory protein JOA57_08405 PF02397 Bacterial sugar transferase JOA57_08425 PF00534 Glycosyl transferases group 1 JOA57_08425 PF13439 Glycosyltransferase Family 4 JOA57_08435 PF01943 Polysaccharide biosynthesis protein JOA57_08450 PF03808 Glycosyl transferase WecB/TagA/CpsF family JOA57_08465 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JOA57_08465 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JOA57_08470 PF00753 Metallo-beta-lactamase superfamily JOA57_08470 PF16123 Hydroxyacylglutathione hydrolase C-terminus JOA57_08475 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family JOA57_08495 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JOA57_08495 PF02780 Transketolase, C-terminal domain JOA57_08495 PF02779 Transketolase, pyrimidine binding domain JOA57_08505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JOA57_08505 PF12806 Acetyl-CoA dehydrogenase C-terminal like JOA57_08505 PF02770 Acyl-CoA dehydrogenase, middle domain JOA57_08505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JOA57_08535 PF08448 PAS fold JOA57_08535 PF00072 Response regulator receiver domain JOA57_08535 PF13188 PAS domain JOA57_08535 PF00512 His Kinase A (phospho-acceptor) domain JOA57_08535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_08560 PF13426 PAS domain JOA57_08560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_08560 PF00072 Response regulator receiver domain JOA57_08570 PF04362 Bacterial Fe(2+) trafficking JOA57_08575 PF00633 Helix-hairpin-helix motif JOA57_08575 PF00730 HhH-GPD superfamily base excision DNA repair protein JOA57_08575 PF14815 NUDIX domain JOA57_08580 PF00448 SRP54-type protein, GTPase domain JOA57_08580 PF02881 SRP54-type protein, helical bundle domain JOA57_08590 PF05544 Proline racemase JOA57_08595 PF01266 FAD dependent oxidoreductase JOA57_08605 PF04324 BFD-like [2Fe-2S] binding domain JOA57_08605 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOA57_08610 PF00701 Dihydrodipicolinate synthetase family JOA57_08615 PF00171 Aldehyde dehydrogenase family JOA57_08620 PF01321 Creatinase/Prolidase N-terminal domain JOA57_08620 PF00557 Metallopeptidase family M24 JOA57_08640 PF13520 Amino acid permease JOA57_08675 PF00593 TonB dependent receptor JOA57_08675 PF07715 TonB-dependent Receptor Plug Domain JOA57_08680 PF07532 Bacterial Ig-like domain (group 4) JOA57_08685 PF04616 Glycosyl hydrolases family 43 JOA57_08690 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region JOA57_08690 PF00326 Prolyl oligopeptidase family JOA57_08700 PF07715 TonB-dependent Receptor Plug Domain JOA57_08700 PF00593 TonB dependent receptor JOA57_08715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_08715 PF00183 Hsp90 protein JOA57_08725 PF01467 Cytidylyltransferase-like JOA57_08740 PF00037 4Fe-4S binding domain JOA57_08750 PF02927 Cellulase N-terminal ig-like domain JOA57_08750 PF00759 Glycosyl hydrolase family 9 JOA57_08780 PF00202 Aminotransferase class-III JOA57_08790 PF02547 Queuosine biosynthesis protein JOA57_08795 PF01702 Queuine tRNA-ribosyltransferase JOA57_08800 PF02699 Preprotein translocase subunit JOA57_08805 PF02355 Protein export membrane protein JOA57_08805 PF13721 SecD export protein N-terminal TM region JOA57_08805 PF07549 SecD/SecF GG Motif JOA57_08810 PF07549 SecD/SecF GG Motif JOA57_08810 PF02355 Protein export membrane protein JOA57_08825 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JOA57_08830 PF00294 pfkB family carbohydrate kinase JOA57_08835 PF05524 PEP-utilising enzyme, N-terminal JOA57_08835 PF00391 PEP-utilising enzyme, mobile domain JOA57_08835 PF02896 PEP-utilising enzyme, TIM barrel domain JOA57_08835 PF00381 PTS HPr component phosphorylation site JOA57_08835 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JOA57_08840 PF00356 Bacterial regulatory proteins, lacI family JOA57_08850 PF00873 AcrB/AcrD/AcrF family JOA57_08855 PF00529 HlyD membrane-fusion protein of T1SS JOA57_08855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOA57_08865 PF05088 Bacterial NAD-glutamate dehydrogenase JOA57_08870 PF12833 Helix-turn-helix domain JOA57_08875 PF00857 Isochorismatase family JOA57_08880 PF07690 Major Facilitator Superfamily JOA57_08885 PF00072 Response regulator receiver domain JOA57_08890 PF01627 Hpt domain JOA57_08890 PF00672 HAMP domain JOA57_08890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_08890 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JOA57_08890 PF00072 Response regulator receiver domain JOA57_08890 PF00512 His Kinase A (phospho-acceptor) domain JOA57_08895 PF04286 Protein of unknown function (DUF445) JOA57_08905 PF00202 Aminotransferase class-III JOA57_08910 PF07690 Major Facilitator Superfamily JOA57_08915 PF02634 FdhD/NarQ family JOA57_08920 PF00384 Molybdopterin oxidoreductase JOA57_08930 PF07690 Major Facilitator Superfamily JOA57_08930 PF00083 Sugar (and other) transporter JOA57_08935 PF01814 Hemerythrin HHE cation binding domain JOA57_08940 PF00072 Response regulator receiver domain JOA57_08940 PF00990 Diguanylate cyclase, GGDEF domain JOA57_08945 PF01266 FAD dependent oxidoreductase JOA57_08950 PF00120 Glutamine synthetase, catalytic domain JOA57_08955 PF07722 Peptidase C26 JOA57_08960 PF00120 Glutamine synthetase, catalytic domain JOA57_08965 PF00202 Aminotransferase class-III JOA57_08970 PF13416 Bacterial extracellular solute-binding protein JOA57_08975 PF13533 Biotin-lipoyl like JOA57_08980 PF07690 Major Facilitator Superfamily JOA57_08985 PF02321 Outer membrane efflux protein JOA57_08990 PF00005 ABC transporter JOA57_08990 PF08402 TOBE domain JOA57_09000 PF00528 Binding-protein-dependent transport system inner membrane component JOA57_09005 PF00528 Binding-protein-dependent transport system inner membrane component JOA57_09015 PF00171 Aldehyde dehydrogenase family JOA57_09030 PF00571 CBS domain JOA57_09030 PF03471 Transporter associated domain JOA57_09040 PF02130 Uncharacterized protein family UPF0054 JOA57_09050 PF02562 PhoH-like protein JOA57_09055 PF04055 Radical SAM superfamily JOA57_09055 PF00919 Uncharacterized protein family UPF0004 JOA57_09055 PF01938 TRAM domain JOA57_09060 PF02798 Glutathione S-transferase, N-terminal domain JOA57_09060 PF14497 Glutathione S-transferase, C-terminal domain JOA57_09070 PF01464 Transglycosylase SLT domain JOA57_09075 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JOA57_09075 PF00355 Rieske [2Fe-2S] domain JOA57_09080 PF00033 Cytochrome b/b6/petB JOA57_09080 PF00032 Cytochrome b(C-terminal)/b6/petD JOA57_09085 PF02167 Cytochrome C1 family JOA57_09090 PF02798 Glutathione S-transferase, N-terminal domain JOA57_09090 PF00043 Glutathione S-transferase, C-terminal domain JOA57_09095 PF04386 Stringent starvation protein B JOA57_09110 PF00270 DEAD/DEAH box helicase JOA57_09110 PF08494 DEAD/H associated JOA57_09110 PF00271 Helicase conserved C-terminal domain JOA57_09115 PF02245 Methylpurine-DNA glycosylase (MPG) JOA57_09120 PF12729 Four helix bundle sensory module for signal transduction JOA57_09120 PF00672 HAMP domain JOA57_09120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOA57_09125 PF01584 CheW-like domain JOA57_09155 PF01381 Helix-turn-helix JOA57_09170 PF13356 Arm DNA-binding domain JOA57_09170 PF00589 Phage integrase family JOA57_09190 PF13298 DNA polymerase Ligase (LigD) JOA57_09190 PF04679 ATP dependent DNA ligase C terminal region JOA57_09190 PF01068 ATP dependent DNA ligase domain JOA57_09195 PF01612 3'-5' exonuclease JOA57_09195 PF00570 HRDC domain JOA57_09200 PF03781 Sulfatase-modifying factor enzyme 1 JOA57_09210 PF02601 Exonuclease VII, large subunit JOA57_09210 PF13742 OB-fold nucleic acid binding domain JOA57_09215 PF08331 Domain of unknown function (DUF1730) JOA57_09220 PF01256 Carbohydrate kinase JOA57_09220 PF03853 YjeF-related protein N-terminus JOA57_09230 PF11741 AMIN domain JOA57_09230 PF01520 N-acetylmuramoyl-L-alanine amidase JOA57_09235 PF01119 DNA mismatch repair protein, C-terminal domain JOA57_09235 PF08676 MutL C terminal dimerisation domain JOA57_09250 PF05233 PHB accumulation regulatory domain JOA57_09250 PF07879 PHB/PHA accumulation regulator DNA-binding domain JOA57_09255 PF00106 short chain dehydrogenase JOA57_09260 PF00749 tRNA synthetases class I (E and Q), catalytic domain JOA57_09265 PF01435 Peptidase family M48 JOA57_09270 PF00563 EAL domain JOA57_09270 PF03707 Bacterial signalling protein N terminal repeat JOA57_09270 PF00990 Diguanylate cyclase, GGDEF domain JOA57_09280 PF07152 YaeQ protein JOA57_09285 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JOA57_09290 PF00313 'Cold-shock' DNA-binding domain JOA57_09305 PF07859 alpha/beta hydrolase fold JOA57_09310 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JOA57_09315 PF00156 Phosphoribosyl transferase domain JOA57_09320 PF03880 DbpA RNA binding domain JOA57_09320 PF00270 DEAD/DEAH box helicase JOA57_09320 PF00271 Helicase conserved C-terminal domain JOA57_09325 PF00005 ABC transporter JOA57_09325 PF16326 ABC transporter C-terminal domain JOA57_09325 PF12848 ABC transporter JOA57_09335 PF00545 ribonuclease JOA57_09340 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JOA57_09340 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JOA57_09345 PF00459 Inositol monophosphatase family JOA57_09350 PF00588 SpoU rRNA Methylase family JOA57_09360 PF00563 EAL domain JOA57_09360 PF00990 Diguanylate cyclase, GGDEF domain JOA57_09360 PF13188 PAS domain JOA57_09360 PF03707 Bacterial signalling protein N terminal repeat JOA57_09365 PF04055 Radical SAM superfamily JOA57_09370 PF09285 Elongation factor P, C-terminal JOA57_09370 PF08207 Elongation factor P (EF-P) KOW-like domain JOA57_09370 PF01132 Elongation factor P (EF-P) OB domain JOA57_09380 PF01979 Amidohydrolase family JOA57_09390 PF13419 Haloacid dehalogenase-like hydrolase JOA57_09400 PF00295 Glycosyl hydrolases family 28 JOA57_09405 PF01095 Pectinesterase JOA57_09420 PF00753 Metallo-beta-lactamase superfamily JOA57_09430 PF05985 Ethanolamine ammonia-lyase light chain (EutC) JOA57_09435 PF06751 Ethanolamine ammonia lyase large subunit (EutB) JOA57_09445 PF01551 Peptidase family M23 JOA57_09445 PF08460 Bacterial SH3 domain JOA57_09450 PF01979 Amidohydrolase family JOA57_09455 PF01809 Putative membrane protein insertion efficiency factor JOA57_09460 PF01258 Prokaryotic dksA/traR C4-type zinc finger JOA57_09470 PF07690 Major Facilitator Superfamily JOA57_09475 PF02657 Fe-S metabolism associated domain JOA57_09480 PF01406 tRNA synthetases class I (C) catalytic domain JOA57_09480 PF09190 DALR domain JOA57_09490 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JOA57_09490 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JOA57_09500 PF00764 Arginosuccinate synthase JOA57_09505 PF07687 Peptidase dimerisation domain JOA57_09505 PF01546 Peptidase family M20/M25/M40 JOA57_09510 PF00696 Amino acid kinase family JOA57_09510 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase JOA57_09520 PF01118 Semialdehyde dehydrogenase, NAD binding domain JOA57_09525 PF00206 Lyase JOA57_09540 PF00696 Amino acid kinase family JOA57_09540 PF01472 PUA domain JOA57_09545 PF00171 Aldehyde dehydrogenase family JOA57_09560 PF02129 X-Pro dipeptidyl-peptidase (S15 family) JOA57_09560 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain JOA57_09580 PF02322 Cytochrome bd terminal oxidase subunit II JOA57_09585 PF01654 Cytochrome bd terminal oxidase subunit I JOA57_09590 PF00005 ABC transporter JOA57_09590 PF00664 ABC transporter transmembrane region JOA57_09595 PF00664 ABC transporter transmembrane region JOA57_09595 PF00005 ABC transporter JOA57_09605 PF00561 alpha/beta hydrolase fold JOA57_09620 PF03918 Cytochrome C biogenesis protein JOA57_09625 PF08534 Redoxin JOA57_09630 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JOA57_09630 PF01578 Cytochrome C assembly protein JOA57_09635 PF03100 CcmE JOA57_09645 PF01578 Cytochrome C assembly protein JOA57_09650 PF03379 CcmB protein JOA57_09655 PF00005 ABC transporter JOA57_09660 PF00155 Aminotransferase class I and II JOA57_09665 PF00795 Carbon-nitrogen hydrolase JOA57_09685 PF00849 RNA pseudouridylate synthase JOA57_09685 PF01479 S4 domain JOA57_09690 PF04079 Segregation and condensation complex subunit ScpB JOA57_09695 PF02616 Segregation and condensation protein ScpA JOA57_09700 PF03795 YCII-related domain JOA57_09710 PF00356 Bacterial regulatory proteins, lacI family JOA57_09725 PF13416 Bacterial extracellular solute-binding protein JOA57_09730 PF00528 Binding-protein-dependent transport system inner membrane component JOA57_09735 PF00528 Binding-protein-dependent transport system inner membrane component JOA57_09760 PF00795 Carbon-nitrogen hydrolase JOA57_09765 PF04371 Porphyromonas-type peptidyl-arginine deiminase JOA57_09775 PF00444 Ribosomal protein L36 JOA57_09780 PF02224 Cytidylate kinase JOA57_09785 PF00575 S1 RNA binding domain JOA57_09790 PF00216 Bacterial DNA-binding protein JOA57_09800 PF18073 Rubredoxin metal binding domain JOA57_09805 PF00953 Glycosyl transferase family 4 JOA57_09810 PF02719 Polysaccharide biosynthesis protein JOA57_09815 PF00483 Nucleotidyl transferase JOA57_09820 PF00999 Sodium/hydrogen exchanger family JOA57_09820 PF02254 TrkA-N domain JOA57_09830 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JOA57_09830 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JOA57_09835 PF00478 IMP dehydrogenase / GMP reductase domain JOA57_09835 PF00571 CBS domain JOA57_09845 PF02540 NAD synthase JOA57_09845 PF00958 GMP synthase C terminal domain JOA57_09845 PF00117 Glutamine amidotransferase class-I JOA57_09860 PF00072 Response regulator receiver domain JOA57_09860 PF00196 Bacterial regulatory proteins, luxR family JOA57_09865 PF07730 Histidine kinase JOA57_09865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_09865 PF13492 GAF domain JOA57_09865 PF13185 GAF domain JOA57_09875 PF00857 Isochorismatase family JOA57_09885 PF07969 Amidohydrolase family JOA57_09890 PF05977 Transmembrane secretion effector JOA57_09900 PF00561 alpha/beta hydrolase fold JOA57_09905 PF01566 Natural resistance-associated macrophage protein JOA57_09910 PF02742 Iron dependent repressor, metal binding and dimerisation domain JOA57_09910 PF01325 Iron dependent repressor, N-terminal DNA binding domain JOA57_09915 PF14437 MafB19-like deaminase JOA57_09920 PF00929 Exonuclease JOA57_09925 PF00924 Mechanosensitive ion channel JOA57_09925 PF05552 Conserved TM helix JOA57_09930 PF00391 PEP-utilising enzyme, mobile domain JOA57_09930 PF02896 PEP-utilising enzyme, TIM barrel domain JOA57_09930 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JOA57_09935 PF03618 Kinase/pyrophosphorylase JOA57_09955 PF01066 CDP-alcohol phosphatidyltransferase JOA57_09965 PF00561 alpha/beta hydrolase fold JOA57_09980 PF01266 FAD dependent oxidoreductase JOA57_09980 PF00355 Rieske [2Fe-2S] domain JOA57_09990 PF16921 Tex protein YqgF-like domain JOA57_09990 PF00575 S1 RNA binding domain JOA57_09990 PF17674 HHH domain JOA57_09990 PF09371 Tex-like protein N-terminal domain JOA57_09995 PF00563 EAL domain JOA57_09995 PF00990 Diguanylate cyclase, GGDEF domain JOA57_09995 PF08447 PAS fold JOA57_09995 PF08448 PAS fold JOA57_10035 PF00034 Cytochrome c JOA57_10045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOA57_10050 PF00873 AcrB/AcrD/AcrF family JOA57_10055 PF00873 AcrB/AcrD/AcrF family JOA57_10060 PF01081 KDPG and KHG aldolase JOA57_10065 PF00920 Dehydratase family JOA57_10070 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JOA57_10075 PF02685 Glucokinase JOA57_10080 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JOA57_10080 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JOA57_10085 PF00005 ABC transporter JOA57_10085 PF17912 MalK OB fold domain JOA57_10090 PF01571 Aminomethyltransferase folate-binding domain JOA57_10100 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JOA57_10105 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JOA57_10110 PF00890 FAD binding domain JOA57_10110 PF02910 Fumarate reductase flavoprotein C-term JOA57_10120 PF13085 2Fe-2S iron-sulfur cluster binding domain JOA57_10125 PF03937 Flavinator of succinate dehydrogenase JOA57_10135 PF02687 FtsX-like permease family JOA57_10135 PF12704 MacB-like periplasmic core domain JOA57_10140 PF00005 ABC transporter JOA57_10150 PF00753 Metallo-beta-lactamase superfamily JOA57_10150 PF03772 Competence protein JOA57_10155 PF01618 MotA/TolQ/ExbB proton channel family JOA57_10165 PF00664 ABC transporter transmembrane region JOA57_10165 PF00005 ABC transporter JOA57_10170 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JOA57_10175 PF02348 Cytidylyltransferase JOA57_10180 PF01451 Low molecular weight phosphotyrosine protein phosphatase JOA57_10190 PF08459 UvrC Helix-hairpin-helix N-terminal JOA57_10190 PF02151 UvrB/uvrC motif JOA57_10190 PF01541 GIY-YIG catalytic domain JOA57_10195 PF01066 CDP-alcohol phosphatidyltransferase JOA57_10215 PF04055 Radical SAM superfamily JOA57_10215 PF06969 HemN C-terminal domain JOA57_10225 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JOA57_10225 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JOA57_10225 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JOA57_10230 PF01593 Flavin containing amine oxidoreductase JOA57_10235 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JOA57_10245 PF17773 UPF0176 acylphosphatase like domain JOA57_10245 PF00581 Rhodanese-like domain JOA57_10250 PF00196 Bacterial regulatory proteins, luxR family JOA57_10250 PF00072 Response regulator receiver domain JOA57_10260 PF10150 Ribonuclease E/G family JOA57_10260 PF12111 Polyribonucleotide phosphorylase C terminal JOA57_10260 PF00575 S1 RNA binding domain JOA57_10265 PF01479 S4 domain JOA57_10265 PF00849 RNA pseudouridylate synthase JOA57_10270 PF02535 ZIP Zinc transporter JOA57_10280 PF01329 Pterin 4 alpha carbinolamine dehydratase JOA57_10285 PF01106 NifU-like domain JOA57_10325 PF17091 Inovirus G7P protein JOA57_10420 PF12320 Type 5 capsule protein repressor C-terminal domain JOA57_10420 PF00149 Calcineurin-like phosphoesterase JOA57_10425 PF02463 RecF/RecN/SMC N terminal domain JOA57_10425 PF06470 SMC proteins Flexible Hinge Domain JOA57_10455 PF03377 TAL effector repeat JOA57_10465 PF05598 Transposase domain (DUF772) JOA57_10485 PF13614 AAA domain JOA57_10490 PF00239 Resolvase, N terminal domain JOA57_10490 PF02796 Helix-turn-helix domain of resolvase JOA57_10540 PF13700 Domain of unknown function (DUF4158) JOA57_10540 PF01526 Tn3 transposase DDE domain JOA57_10635 PF00072 Response regulator receiver domain JOA57_10635 PF04397 LytTr DNA-binding domain JOA57_10645 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain JOA57_10645 PF10091 Putative glucoamylase JOA57_10645 PF06165 Glycosyltransferase family 36 JOA57_10650 PF13188 PAS domain JOA57_10650 PF08448 PAS fold JOA57_10650 PF00512 His Kinase A (phospho-acceptor) domain JOA57_10650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_10650 PF00072 Response regulator receiver domain JOA57_10655 PF13426 PAS domain JOA57_10655 PF00072 Response regulator receiver domain JOA57_10655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_10675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOA57_10675 PF02203 Tar ligand binding domain homologue JOA57_10675 PF00672 HAMP domain JOA57_10680 PF00593 TonB dependent receptor JOA57_10680 PF07715 TonB-dependent Receptor Plug Domain JOA57_10680 PF07660 Secretin and TonB N terminus short domain JOA57_10685 PF09335 SNARE associated Golgi protein JOA57_10715 PF01638 HxlR-like helix-turn-helix JOA57_10730 PF02630 SCO1/SenC JOA57_10745 PF05649 Peptidase family M13 JOA57_10745 PF01431 Peptidase family M13 JOA57_10760 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JOA57_10765 PF07995 Glucose / Sorbosone dehydrogenase JOA57_10775 PF01590 GAF domain JOA57_10775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_10775 PF00512 His Kinase A (phospho-acceptor) domain JOA57_10775 PF08446 PAS fold JOA57_10775 PF00360 Phytochrome region JOA57_10790 PF00561 alpha/beta hydrolase fold JOA57_10800 PF03797 Autotransporter beta-domain JOA57_10800 PF00082 Subtilase family JOA57_10805 PF12951 Passenger-associated-transport-repeat JOA57_10810 PF00563 EAL domain JOA57_10810 PF08448 PAS fold JOA57_10810 PF08447 PAS fold JOA57_10810 PF00990 Diguanylate cyclase, GGDEF domain JOA57_10820 PF01339 CheB methylesterase JOA57_10820 PF00072 Response regulator receiver domain JOA57_10825 PF05974 Domain of unknown function (DUF892) JOA57_10840 PF01266 FAD dependent oxidoreductase JOA57_10850 PF00483 Nucleotidyl transferase JOA57_10860 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JOA57_10875 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JOA57_10880 PF00384 Molybdopterin oxidoreductase JOA57_10880 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JOA57_10880 PF01568 Molydopterin dinucleotide binding domain JOA57_10880 PF04324 BFD-like [2Fe-2S] binding domain JOA57_10885 PF11723 Homotrimeric ring hydroxylase JOA57_10885 PF00355 Rieske [2Fe-2S] domain JOA57_10890 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOA57_10890 PF18267 Rubredoxin NAD+ reductase C-terminal domain JOA57_10890 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JOA57_10890 PF04324 BFD-like [2Fe-2S] binding domain JOA57_10890 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JOA57_10895 PF07690 Major Facilitator Superfamily JOA57_10905 PF03861 ANTAR domain JOA57_10905 PF00072 Response regulator receiver domain JOA57_10910 PF10414 Sirohaem synthase dimerisation region JOA57_10910 PF14824 Sirohaem biosynthesis protein central JOA57_10910 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JOA57_10920 PF12804 MobA-like NTP transferase domain JOA57_10925 PF03453 MoeA N-terminal region (domain I and II) JOA57_10925 PF00994 Probable molybdopterin binding domain JOA57_10925 PF03454 MoeA C-terminal region (domain IV) JOA57_10935 PF03372 Endonuclease/Exonuclease/phosphatase family JOA57_10945 PF08240 Alcohol dehydrogenase GroES-like domain JOA57_10945 PF13823 Alcohol dehydrogenase GroES-associated JOA57_10945 PF00107 Zinc-binding dehydrogenase JOA57_10960 PF00067 Cytochrome P450 JOA57_10965 PF00106 short chain dehydrogenase JOA57_10980 PF00899 ThiF family JOA57_10985 PF00994 Probable molybdopterin binding domain JOA57_10985 PF03454 MoeA C-terminal region (domain IV) JOA57_10985 PF03453 MoeA N-terminal region (domain I and II) JOA57_10990 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JOA57_10990 PF01926 50S ribosome-binding GTPase JOA57_10995 PF01011 PQQ enzyme repeat JOA57_10995 PF13360 PQQ-like domain JOA57_11005 PF13464 Domain of unknown function (DUF4115) JOA57_11015 PF04055 Radical SAM superfamily JOA57_11020 PF00334 Nucleoside diphosphate kinase JOA57_11030 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JOA57_11030 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JOA57_11030 PF00378 Enoyl-CoA hydratase/isomerase JOA57_11035 PF02803 Thiolase, C-terminal domain JOA57_11035 PF00108 Thiolase, N-terminal domain JOA57_11040 PF00654 Voltage gated chloride channel JOA57_11045 PF00004 ATPase family associated with various cellular activities (AAA) JOA57_11045 PF16193 AAA C-terminal domain JOA57_11045 PF12002 MgsA AAA+ ATPase C terminal JOA57_11055 PF03548 Outer membrane lipoprotein carrier protein LolA JOA57_11065 PF01580 FtsK/SpoIIIE family JOA57_11065 PF09397 Ftsk gamma domain JOA57_11065 PF17854 FtsK alpha domain JOA57_11065 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JOA57_11070 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOA57_11080 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JOA57_11085 PF01176 Translation initiation factor 1A / IF-1 JOA57_11090 PF00004 ATPase family associated with various cellular activities (AAA) JOA57_11090 PF07724 AAA domain (Cdc48 subfamily) JOA57_11090 PF17871 AAA lid domain JOA57_11090 PF02861 Clp amino terminal domain, pathogenicity island component JOA57_11090 PF10431 C-terminal, D2-small domain, of ClpB protein JOA57_11095 PF02617 ATP-dependent Clp protease adaptor protein ClpS JOA57_11100 PF00293 NUDIX domain JOA57_11110 PF04356 Protein of unknown function (DUF489) JOA57_11115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOA57_11115 PF12729 Four helix bundle sensory module for signal transduction JOA57_11115 PF00672 HAMP domain JOA57_11130 PF03707 Bacterial signalling protein N terminal repeat JOA57_11130 PF00990 Diguanylate cyclase, GGDEF domain JOA57_11130 PF00563 EAL domain JOA57_11135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_11135 PF07730 Histidine kinase JOA57_11140 PF00563 EAL domain JOA57_11140 PF03707 Bacterial signalling protein N terminal repeat JOA57_11140 PF00990 Diguanylate cyclase, GGDEF domain JOA57_11145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_11145 PF00512 His Kinase A (phospho-acceptor) domain JOA57_11165 PF00072 Response regulator receiver domain JOA57_11165 PF01584 CheW-like domain JOA57_11175 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JOA57_11175 PF00460 Flagella basal body rod protein JOA57_11180 PF03963 Flagellar hook capping protein - N-terminal region JOA57_11185 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JOA57_11185 PF07559 Flagellar basal body protein FlaE JOA57_11185 PF00460 Flagella basal body rod protein JOA57_11190 PF00460 Flagella basal body rod protein JOA57_11190 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JOA57_11195 PF00460 Flagella basal body rod protein JOA57_11195 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JOA57_11200 PF02107 Flagellar L-ring protein JOA57_11205 PF02119 Flagellar P-ring protein JOA57_11210 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JOA57_11210 PF10135 Rod binding protein JOA57_11215 PF07196 Flagellin hook IN motif JOA57_11215 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JOA57_11220 PF00669 Bacterial flagellin N-terminal helical region JOA57_11225 PF00700 Bacterial flagellin C-terminal helical region JOA57_11225 PF00669 Bacterial flagellin N-terminal helical region JOA57_11230 PF07195 Flagellar hook-associated protein 2 C-terminus JOA57_11230 PF02465 Flagellar hook-associated protein 2 N-terminus JOA57_11230 PF07196 Flagellin hook IN motif JOA57_11235 PF02561 Flagellar protein FliS JOA57_11250 PF00196 Bacterial regulatory proteins, luxR family JOA57_11250 PF00072 Response regulator receiver domain JOA57_11255 PF00309 Sigma-54 factor, Activator interacting domain (AID) JOA57_11255 PF04963 Sigma-54 factor, core binding domain JOA57_11255 PF04552 Sigma-54, DNA binding domain JOA57_11260 PF01339 CheB methylesterase JOA57_11260 PF00072 Response regulator receiver domain JOA57_11265 PF00158 Sigma-54 interaction domain JOA57_11265 PF06490 Flagellar regulatory protein FleQ JOA57_11265 PF02954 Bacterial regulatory protein, Fis family JOA57_11270 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JOA57_11290 PF00535 Glycosyl transferase family 2 JOA57_11295 PF02049 Flagellar hook-basal body complex protein FliE JOA57_11300 PF01514 Secretory protein of YscJ/FliF family JOA57_11300 PF08345 Flagellar M-ring protein C-terminal JOA57_11305 PF01706 FliG C-terminal domain JOA57_11305 PF14842 FliG N-terminal domain JOA57_11305 PF14841 FliG middle domain JOA57_11315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JOA57_11315 PF18269 T3SS EscN ATPase C-terminal domain JOA57_11335 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JOA57_11335 PF02154 Flagellar motor switch protein FliM JOA57_11340 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JOA57_11345 PF04347 Flagellar biosynthesis protein, FliO JOA57_11350 PF00813 FliP family JOA57_11360 PF01313 Bacterial export proteins, family 3 JOA57_11365 PF01311 Bacterial export proteins, family 1 JOA57_11370 PF00990 Diguanylate cyclase, GGDEF domain JOA57_11375 PF00990 Diguanylate cyclase, GGDEF domain JOA57_11380 PF00563 EAL domain JOA57_11380 PF03707 Bacterial signalling protein N terminal repeat JOA57_11380 PF00990 Diguanylate cyclase, GGDEF domain JOA57_11385 PF01312 FlhB HrpN YscU SpaS Family JOA57_11390 PF00771 FHIPEP family JOA57_11395 PF00448 SRP54-type protein, GTPase domain JOA57_11400 PF10609 NUBPL iron-transfer P-loop NTPase JOA57_11405 PF04542 Sigma-70 region 2 JOA57_11405 PF04545 Sigma-70, region 4 JOA57_11405 PF04539 Sigma-70 region 3 JOA57_11410 PF00072 Response regulator receiver domain JOA57_11415 PF04344 Chemotaxis phosphatase, CheZ JOA57_11420 PF00072 Response regulator receiver domain JOA57_11420 PF01627 Hpt domain JOA57_11420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_11420 PF02895 Signal transducing histidine kinase, homodimeric domain JOA57_11420 PF01584 CheW-like domain JOA57_11485 PF01618 MotA/TolQ/ExbB proton channel family JOA57_11490 PF13677 Membrane MotB of proton-channel complex MotA/MotB JOA57_11490 PF00691 OmpA family JOA57_11495 PF13614 AAA domain JOA57_11500 PF01584 CheW-like domain JOA57_11510 PF00072 Response regulator receiver domain JOA57_11515 PF01627 Hpt domain JOA57_11515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_11515 PF02895 Signal transducing histidine kinase, homodimeric domain JOA57_11515 PF09078 CheY binding JOA57_11515 PF01584 CheW-like domain JOA57_11520 PF02203 Tar ligand binding domain homologue JOA57_11520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOA57_11520 PF00672 HAMP domain JOA57_11530 PF02203 Tar ligand binding domain homologue JOA57_11530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOA57_11530 PF00672 HAMP domain JOA57_11535 PF02203 Tar ligand binding domain homologue JOA57_11535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOA57_11535 PF00672 HAMP domain JOA57_11545 PF02203 Tar ligand binding domain homologue JOA57_11545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOA57_11545 PF00672 HAMP domain JOA57_11550 PF02203 Tar ligand binding domain homologue JOA57_11550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOA57_11550 PF00672 HAMP domain JOA57_11555 PF02203 Tar ligand binding domain homologue JOA57_11555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOA57_11555 PF00672 HAMP domain JOA57_11565 PF02203 Tar ligand binding domain homologue JOA57_11565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOA57_11565 PF00672 HAMP domain JOA57_11570 PF07317 Flagellar regulator YcgR JOA57_11570 PF07238 PilZ domain JOA57_11575 PF01584 CheW-like domain JOA57_11585 PF02203 Tar ligand binding domain homologue JOA57_11585 PF00672 HAMP domain JOA57_11585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOA57_11590 PF01739 CheR methyltransferase, SAM binding domain JOA57_11590 PF03705 CheR methyltransferase, all-alpha domain JOA57_11595 PF03975 CheD chemotactic sensory transduction JOA57_11600 PF00072 Response regulator receiver domain JOA57_11600 PF01339 CheB methylesterase JOA57_11605 PF00563 EAL domain JOA57_11605 PF00990 Diguanylate cyclase, GGDEF domain JOA57_11605 PF03707 Bacterial signalling protein N terminal repeat JOA57_11610 PF00561 alpha/beta hydrolase fold JOA57_11615 PF06434 Aconitate hydratase 2 N-terminus JOA57_11615 PF11791 Aconitate B N-terminal domain JOA57_11615 PF00330 Aconitase family (aconitate hydratase) JOA57_11630 PF00330 Aconitase family (aconitate hydratase) JOA57_11630 PF00694 Aconitase C-terminal domain JOA57_11640 PF13193 AMP-binding enzyme C-terminal domain JOA57_11640 PF00501 AMP-binding enzyme JOA57_11645 PF00378 Enoyl-CoA hydratase/isomerase JOA57_11650 PF00072 Response regulator receiver domain JOA57_11650 PF01627 Hpt domain JOA57_11650 PF00512 His Kinase A (phospho-acceptor) domain JOA57_11650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_11655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_11655 PF00072 Response regulator receiver domain JOA57_11655 PF01627 Hpt domain JOA57_11655 PF00512 His Kinase A (phospho-acceptor) domain JOA57_11660 PF00072 Response regulator receiver domain JOA57_11665 PF01336 OB-fold nucleic acid binding domain JOA57_11665 PF00152 tRNA synthetases class II (D, K and N) JOA57_11675 PF00072 Response regulator receiver domain JOA57_11675 PF04397 LytTr DNA-binding domain JOA57_11700 PF17768 RecJ OB domain JOA57_11700 PF01368 DHH family JOA57_11700 PF02272 DHHA1 domain JOA57_11710 PF03449 Transcription elongation factor, N-terminal JOA57_11710 PF01272 Transcription elongation factor, GreA/GreB, C-term JOA57_11715 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JOA57_11715 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JOA57_11715 PF02142 MGS-like domain JOA57_11725 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JOA57_11725 PF00117 Glutamine amidotransferase class-I JOA57_11730 PF05173 Dihydrodipicolinate reductase, C-terminus JOA57_11730 PF01113 Dihydrodipicolinate reductase, N-terminus JOA57_11735 PF03473 MOSC domain JOA57_11735 PF03475 3-alpha domain JOA57_11740 PF00155 Aminotransferase class I and II JOA57_11755 PF02421 Ferrous iron transport protein B JOA57_11755 PF07670 Nucleoside recognition JOA57_11755 PF07664 Ferrous iron transport protein B C terminus JOA57_11765 PF00378 Enoyl-CoA hydratase/isomerase JOA57_11770 PF00682 HMGL-like JOA57_11775 PF00106 short chain dehydrogenase JOA57_11780 PF01132 Elongation factor P (EF-P) OB domain JOA57_11780 PF09285 Elongation factor P, C-terminal JOA57_11780 PF08207 Elongation factor P (EF-P) KOW-like domain JOA57_11800 PF01565 FAD binding domain JOA57_11800 PF02913 FAD linked oxidases, C-terminal domain JOA57_11805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JOA57_11805 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JOA57_11820 PF13520 Amino acid permease JOA57_11825 PF13520 Amino acid permease JOA57_11830 PF00596 Class II Aldolase and Adducin N-terminal domain JOA57_11835 PF03079 ARD/ARD' family JOA57_11855 PF01502 Phosphoribosyl-AMP cyclohydrolase JOA57_11855 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JOA57_11860 PF00977 Histidine biosynthesis protein JOA57_11865 PF00977 Histidine biosynthesis protein JOA57_11870 PF00117 Glutamine amidotransferase class-I JOA57_11875 PF00475 Imidazoleglycerol-phosphate dehydratase JOA57_11880 PF00155 Aminotransferase class I and II JOA57_11885 PF00815 Histidinol dehydrogenase JOA57_11890 PF01634 ATP phosphoribosyltransferase JOA57_11890 PF08029 HisG, C-terminal domain JOA57_11900 PF03129 Anticodon binding domain JOA57_11900 PF13393 Histidyl-tRNA synthetase JOA57_11905 PF00027 Cyclic nucleotide-binding domain JOA57_11905 PF13545 Crp-like helix-turn-helix domain JOA57_11915 PF00291 Pyridoxal-phosphate dependent enzyme JOA57_11915 PF14821 Threonine synthase N terminus JOA57_11925 PF00288 GHMP kinases N terminal domain JOA57_11925 PF08544 GHMP kinases C terminal JOA57_11930 PF03447 Homoserine dehydrogenase, NAD binding domain JOA57_11930 PF00742 Homoserine dehydrogenase JOA57_11930 PF13840 ACT domain JOA57_11930 PF01842 ACT domain JOA57_11930 PF00696 Amino acid kinase family JOA57_11955 PF17287 POTRA domain JOA57_11955 PF08479 POTRA domain, ShlB-type JOA57_11955 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB JOA57_11965 PF00171 Aldehyde dehydrogenase family JOA57_11980 PF01180 Dihydroorotate dehydrogenase JOA57_11985 PF01565 FAD binding domain JOA57_11985 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JOA57_11990 PF00892 EamA-like transporter family JOA57_11995 PF01177 Asp/Glu/Hydantoin racemase JOA57_12000 PF07690 Major Facilitator Superfamily JOA57_12005 PF01569 PAP2 superfamily JOA57_12010 PF04551 GcpE protein JOA57_12020 PF00072 Response regulator receiver domain JOA57_12025 PF02013 Cellulose or protein binding domain JOA57_12025 PF00150 Cellulase (glycosyl hydrolase family 5) JOA57_12030 PF00360 Phytochrome region JOA57_12030 PF00990 Diguanylate cyclase, GGDEF domain JOA57_12030 PF01590 GAF domain JOA57_12030 PF00563 EAL domain JOA57_12035 PF00474 Sodium:solute symporter family JOA57_12040 PF01915 Glycosyl hydrolase family 3 C-terminal domain JOA57_12040 PF00933 Glycosyl hydrolase family 3 N terminal domain JOA57_12040 PF14310 Fibronectin type III-like domain JOA57_12055 PF00342 Phosphoglucose isomerase JOA57_12060 PF02261 Aspartate decarboxylase JOA57_12065 PF02569 Pantoate-beta-alanine ligase JOA57_12070 PF02548 Ketopantoate hydroxymethyltransferase JOA57_12075 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JOA57_12080 PF12626 Polymerase A arginine-rich C-terminus JOA57_12080 PF12627 Probable RNA and SrmB- binding site of polymerase A JOA57_12080 PF01743 Poly A polymerase head domain JOA57_12090 PF02649 Type I GTP cyclohydrolase folE2 JOA57_12095 PF01520 N-acetylmuramoyl-L-alanine amidase JOA57_12115 PF00083 Sugar (and other) transporter JOA57_12125 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JOA57_12125 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JOA57_12135 PF17137 Domain of unknown function (DUF5110) JOA57_12135 PF16338 Domain of unknown function (DUF4968) JOA57_12135 PF01055 Glycosyl hydrolases family 31 JOA57_12155 PF03442 Carbohydrate binding domain X2 JOA57_12155 PF00942 Cellulose binding domain JOA57_12170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_12170 PF03466 LysR substrate binding domain JOA57_12175 PF01081 KDPG and KHG aldolase JOA57_12180 PF13378 Enolase C-terminal domain-like JOA57_12180 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JOA57_12185 PF08450 SMP-30/Gluconolactonase/LRE-like region JOA57_12190 PF05035 2-keto-3-deoxy-galactonokinase JOA57_12195 PF00037 4Fe-4S binding domain JOA57_12195 PF11953 Domain of unknown function (DUF3470) JOA57_12205 PF00701 Dihydrodipicolinate synthetase family JOA57_12220 PF00578 AhpC/TSA family JOA57_12225 PF02562 PhoH-like protein JOA57_12225 PF13638 PIN domain JOA57_12235 PF02581 Thiamine monophosphate synthase JOA57_12235 PF08543 Phosphomethylpyrimidine kinase JOA57_12260 PF03466 LysR substrate binding domain JOA57_12260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_12265 PF02678 Pirin JOA57_12265 PF17954 Quercetinase C-terminal cupin domain JOA57_12270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JOA57_12270 PF08447 PAS fold JOA57_12270 PF13426 PAS domain JOA57_12280 PF02599 Global regulator protein family JOA57_12285 PF02272 DHHA1 domain JOA57_12285 PF01411 tRNA synthetases class II (A) JOA57_12285 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JOA57_12290 PF02631 RecX family JOA57_12295 PF00154 recA bacterial DNA recombination protein JOA57_12300 PF00717 Peptidase S24-like JOA57_12300 PF01726 LexA DNA binding domain JOA57_12305 PF03109 ABC1 family JOA57_12310 PF07715 TonB-dependent Receptor Plug Domain JOA57_12310 PF00593 TonB dependent receptor JOA57_12320 PF02464 Competence-damaged protein JOA57_12325 PF16360 GTP-binding GTPase Middle Region JOA57_12325 PF13167 GTP-binding GTPase N-terminal JOA57_12325 PF01926 50S ribosome-binding GTPase JOA57_12330 PF17209 Hfq protein JOA57_12340 PF00809 Pterin binding enzyme JOA57_12345 PF17862 AAA+ lid domain JOA57_12345 PF00004 ATPase family associated with various cellular activities (AAA) JOA57_12345 PF01434 Peptidase family M41 JOA57_12345 PF06480 FtsH Extracellular JOA57_12350 PF01728 FtsJ-like methyltransferase JOA57_12355 PF01985 CRS1 / YhbY (CRM) domain JOA57_12360 PF04430 Protein of unknown function (DUF498/DUF598) JOA57_12365 PF01476 LysM domain JOA57_12365 PF01551 Peptidase family M23 JOA57_12370 PF09335 SNARE associated Golgi protein JOA57_12380 PF01975 Survival protein SurE JOA57_12385 PF01713 Smr domain JOA57_12395 PF01142 tRNA pseudouridine synthase D (TruD) JOA57_12400 PF02542 YgbB family JOA57_12405 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JOA57_12410 PF04977 Septum formation initiator JOA57_12415 PF00113 Enolase, C-terminal TIM barrel domain JOA57_12415 PF03952 Enolase, N-terminal domain JOA57_12425 PF00793 DAHP synthetase I family JOA57_12430 PF00117 Glutamine amidotransferase class-I JOA57_12430 PF06418 CTP synthase N-terminus JOA57_12440 PF00986 DNA gyrase B subunit, carboxyl terminus JOA57_12440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_12440 PF01751 Toprim domain JOA57_12440 PF00204 DNA gyrase B JOA57_12445 PF02611 CDP-diacylglycerol pyrophosphatase JOA57_12460 PF01384 Phosphate transporter family JOA57_12470 PF03471 Transporter associated domain JOA57_12470 PF01595 Cyclin M transmembrane N-terminal domain JOA57_12470 PF00571 CBS domain JOA57_12485 PF00296 Luciferase-like monooxygenase JOA57_12490 PF07690 Major Facilitator Superfamily JOA57_12495 PF00005 ABC transporter JOA57_12495 PF00664 ABC transporter transmembrane region JOA57_12515 PF00534 Glycosyl transferases group 1 JOA57_12515 PF13579 Glycosyl transferase 4-like domain JOA57_12520 PF00534 Glycosyl transferases group 1 JOA57_12520 PF13439 Glycosyltransferase Family 4 JOA57_12530 PF13382 Adenine deaminase C-terminal domain JOA57_12530 PF01979 Amidohydrolase family JOA57_12550 PF00535 Glycosyl transferase family 2 JOA57_12555 PF01943 Polysaccharide biosynthesis protein JOA57_12560 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JOA57_12565 PF05523 WxcM-like, C-terminal JOA57_12570 PF01292 Prokaryotic cytochrome b561 JOA57_12580 PF00034 Cytochrome c JOA57_12590 PF04542 Sigma-70 region 2 JOA57_12590 PF08281 Sigma-70, region 4 JOA57_12600 PF00082 Subtilase family JOA57_12605 PF01578 Cytochrome C assembly protein JOA57_12610 PF04995 Heme exporter protein D (CcmD) JOA57_12615 PF03100 CcmE JOA57_12620 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JOA57_12620 PF01578 Cytochrome C assembly protein JOA57_12625 PF08534 Redoxin JOA57_12630 PF03918 Cytochrome C biogenesis protein JOA57_12640 PF00072 Response regulator receiver domain JOA57_12640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_12640 PF13426 PAS domain JOA57_12645 PF06745 KaiC JOA57_12650 PF02954 Bacterial regulatory protein, Fis family JOA57_12650 PF00072 Response regulator receiver domain JOA57_12650 PF00158 Sigma-54 interaction domain JOA57_12655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_12655 PF00512 His Kinase A (phospho-acceptor) domain JOA57_12655 PF08448 PAS fold JOA57_12655 PF13188 PAS domain JOA57_12655 PF00072 Response regulator receiver domain JOA57_12695 PF02585 GlcNAc-PI de-N-acetylase JOA57_12730 PF03466 LysR substrate binding domain JOA57_12730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_12735 PF02403 Seryl-tRNA synthetase N-terminal domain JOA57_12735 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JOA57_12740 PF03544 Gram-negative bacterial TonB protein C-terminal JOA57_12745 PF03544 Gram-negative bacterial TonB protein C-terminal JOA57_12750 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JOA57_12755 PF01842 ACT domain JOA57_12755 PF01817 Chorismate mutase type II JOA57_12755 PF00800 Prephenate dehydratase JOA57_12760 PF00266 Aminotransferase class-V JOA57_12765 PF00174 Oxidoreductase molybdopterin binding domain JOA57_12770 PF01794 Ferric reductase like transmembrane component JOA57_12795 PF00392 Bacterial regulatory proteins, gntR family JOA57_12795 PF07702 UTRA domain JOA57_12805 PF01979 Amidohydrolase family JOA57_12810 PF00221 Aromatic amino acid lyase JOA57_12820 PF17391 Urocanase N-terminal domain JOA57_12820 PF01175 Urocanase Rossmann-like domain JOA57_12820 PF17392 Urocanase C-terminal domain JOA57_12830 PF13360 PQQ-like domain JOA57_12835 PF00521 DNA gyrase/topoisomerase IV, subunit A JOA57_12835 PF03989 DNA gyrase C-terminal domain, beta-propeller JOA57_12840 PF01008 Initiation factor 2 subunit family JOA57_12850 PF00152 tRNA synthetases class II (D, K and N) JOA57_12855 PF00533 BRCA1 C Terminus (BRCT) domain JOA57_12855 PF01653 NAD-dependent DNA ligase adenylation domain JOA57_12855 PF03120 NAD-dependent DNA ligase OB-fold domain JOA57_12855 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JOA57_12855 PF12826 Helix-hairpin-helix motif JOA57_12860 PF00155 Aminotransferase class I and II JOA57_12865 PF04354 ZipA, C-terminal FtsZ-binding domain JOA57_12870 PF02463 RecF/RecN/SMC N terminal domain JOA57_12880 PF03948 Ribosomal protein L9, C-terminal domain JOA57_12880 PF01281 Ribosomal protein L9, N-terminal domain JOA57_12885 PF01084 Ribosomal protein S18 JOA57_12890 PF01250 Ribosomal protein S6 JOA57_12895 PF01521 Iron-sulphur cluster biosynthesis JOA57_12900 PF01336 OB-fold nucleic acid binding domain JOA57_12900 PF00152 tRNA synthetases class II (D, K and N) JOA57_12925 PF00484 Carbonic anhydrase JOA57_12930 PF06052 3-hydroxyanthranilic acid dioxygenase JOA57_12940 PF00266 Aminotransferase class-V JOA57_12945 PF01494 FAD binding domain JOA57_12950 PF08411 Exonuclease C-terminal JOA57_12950 PF00929 Exonuclease JOA57_12975 PF01513 ATP-NAD kinase JOA57_12980 PF10672 S-adenosylmethionine-dependent methyltransferase JOA57_12980 PF01170 Putative RNA methylase family UPF0020 JOA57_12980 PF02926 THUMP domain JOA57_12985 PF16326 ABC transporter C-terminal domain JOA57_12985 PF12848 ABC transporter JOA57_12985 PF00005 ABC transporter JOA57_13020 PF00581 Rhodanese-like domain JOA57_13025 PF00293 NUDIX domain JOA57_13030 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JOA57_13030 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JOA57_13035 PF00378 Enoyl-CoA hydratase/isomerase JOA57_13045 PF10576 Iron-sulfur binding domain of endonuclease III JOA57_13045 PF00633 Helix-hairpin-helix motif JOA57_13045 PF00730 HhH-GPD superfamily base excision DNA repair protein JOA57_13050 PF01740 STAS domain JOA57_13050 PF00916 Sulfate permease family JOA57_13055 PF00484 Carbonic anhydrase JOA57_13070 PF12849 PBP superfamily domain JOA57_13075 PF12849 PBP superfamily domain JOA57_13080 PF00528 Binding-protein-dependent transport system inner membrane component JOA57_13085 PF00528 Binding-protein-dependent transport system inner membrane component JOA57_13090 PF00005 ABC transporter JOA57_13095 PF01895 PhoU domain JOA57_13105 PF00929 Exonuclease JOA57_13110 PF00990 Diguanylate cyclase, GGDEF domain JOA57_13115 PF00588 SpoU rRNA Methylase family JOA57_13115 PF08032 RNA 2'-O ribose methyltransferase substrate binding JOA57_13125 PF08461 Ribonuclease R winged-helix domain JOA57_13125 PF17876 Cold shock domain JOA57_13125 PF00773 RNB domain JOA57_13125 PF00575 S1 RNA binding domain JOA57_13125 PF08206 Ribonuclease B OB domain JOA57_13140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JOA57_13140 PF02770 Acyl-CoA dehydrogenase, middle domain JOA57_13140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JOA57_13145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JOA57_13145 PF02770 Acyl-CoA dehydrogenase, middle domain JOA57_13145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JOA57_13155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JOA57_13155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JOA57_13155 PF02770 Acyl-CoA dehydrogenase, middle domain JOA57_13160 PF01209 ubiE/COQ5 methyltransferase family JOA57_13165 PF00809 Pterin binding enzyme JOA57_13165 PF02574 Homocysteine S-methyltransferase JOA57_13170 PF02607 B12 binding domain JOA57_13170 PF02965 Vitamin B12 dependent methionine synthase, activation domain JOA57_13170 PF02310 B12 binding domain JOA57_13170 PF02574 Homocysteine S-methyltransferase JOA57_13170 PF00809 Pterin binding enzyme JOA57_13180 PF00294 pfkB family carbohydrate kinase JOA57_13185 PF07690 Major Facilitator Superfamily JOA57_13190 PF00356 Bacterial regulatory proteins, lacI family JOA57_13205 PF04102 SlyX JOA57_13210 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JOA57_13210 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JOA57_13210 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JOA57_13215 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JOA57_13215 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JOA57_13220 PF00255 Glutathione peroxidase JOA57_13230 PF00392 Bacterial regulatory proteins, gntR family JOA57_13235 PF00005 ABC transporter JOA57_13260 PF10415 Fumarase C C-terminus JOA57_13260 PF00206 Lyase JOA57_13270 PF08328 Adenylosuccinate lyase C-terminal JOA57_13270 PF00206 Lyase JOA57_13280 PF08007 Cupin superfamily protein JOA57_13290 PF02779 Transketolase, pyrimidine binding domain JOA57_13290 PF16078 2-oxoglutarate dehydrogenase N-terminus JOA57_13290 PF16870 2-oxoglutarate dehydrogenase C-terminal JOA57_13290 PF00676 Dehydrogenase E1 component JOA57_13295 PF00364 Biotin-requiring enzyme JOA57_13295 PF02817 e3 binding domain JOA57_13295 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JOA57_13300 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JOA57_13300 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOA57_13305 PF03641 Possible lysine decarboxylase JOA57_13310 PF01205 Uncharacterized protein family UPF0029 JOA57_13315 PF00005 ABC transporter JOA57_13315 PF00664 ABC transporter transmembrane region JOA57_13320 PF03466 LysR substrate binding domain JOA57_13320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_13325 PF03412 Peptidase C39 family JOA57_13325 PF00005 ABC transporter JOA57_13325 PF00664 ABC transporter transmembrane region JOA57_13350 PF08543 Phosphomethylpyrimidine kinase JOA57_13360 PF00684 DnaJ central domain JOA57_13360 PF00226 DnaJ domain JOA57_13360 PF01556 DnaJ C terminal domain JOA57_13365 PF00012 Hsp70 protein JOA57_13370 PF01025 GrpE JOA57_13375 PF01628 HrcA protein C terminal domain JOA57_13375 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding JOA57_13380 PF02463 RecF/RecN/SMC N terminal domain JOA57_13385 PF01475 Ferric uptake regulator family JOA57_13390 PF04355 SmpA / OmlA family JOA57_13395 PF03658 RnfH family Ubiquitin JOA57_13405 PF01668 SmpB protein JOA57_13410 PF00082 Subtilase family JOA57_13490 PF00990 Diguanylate cyclase, GGDEF domain JOA57_13500 PF00990 Diguanylate cyclase, GGDEF domain JOA57_13505 PF02321 Outer membrane efflux protein JOA57_13515 PF00873 AcrB/AcrD/AcrF family JOA57_13520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOA57_13520 PF00529 HlyD membrane-fusion protein of T1SS JOA57_13530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_13530 PF03466 LysR substrate binding domain JOA57_13535 PF05736 OprF membrane domain JOA57_13535 PF00691 OmpA family JOA57_13540 PF03441 FAD binding domain of DNA photolyase JOA57_13540 PF00875 DNA photolyase JOA57_13545 PF03796 DnaB-like helicase C terminal domain JOA57_13545 PF00772 DnaB-like helicase N terminal domain JOA57_13550 PF03358 NADPH-dependent FMN reductase JOA57_13555 PF00733 Asparagine synthase JOA57_13555 PF13537 Glutamine amidotransferase domain JOA57_13560 PF02798 Glutathione S-transferase, N-terminal domain JOA57_13560 PF00043 Glutathione S-transferase, C-terminal domain JOA57_13570 PF02770 Acyl-CoA dehydrogenase, middle domain JOA57_13570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JOA57_13570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JOA57_13585 PF01026 TatD related DNase JOA57_13590 PF00899 ThiF family JOA57_13605 PF00313 'Cold-shock' DNA-binding domain JOA57_13615 PF02253 Phospholipase A1 JOA57_13620 PF00484 Carbonic anhydrase JOA57_13635 PF05681 Fumarate hydratase (Fumerase) JOA57_13635 PF05683 Fumarase C-terminus JOA57_13640 PF00005 ABC transporter JOA57_13645 PF00970 Oxidoreductase FAD-binding domain JOA57_13645 PF00175 Oxidoreductase NAD-binding domain JOA57_13650 PF00255 Glutathione peroxidase JOA57_13655 PF01432 Peptidase family M3 JOA57_13690 PF00854 POT family JOA57_13700 PF00933 Glycosyl hydrolase family 3 N terminal domain JOA57_13700 PF14310 Fibronectin type III-like domain JOA57_13700 PF01915 Glycosyl hydrolase family 3 C-terminal domain JOA57_13720 PF07690 Major Facilitator Superfamily JOA57_13725 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOA57_13725 PF00529 HlyD membrane-fusion protein of T1SS JOA57_13730 PF02321 Outer membrane efflux protein JOA57_13745 PF00521 DNA gyrase/topoisomerase IV, subunit A JOA57_13745 PF03989 DNA gyrase C-terminal domain, beta-propeller JOA57_13750 PF05724 Thiopurine S-methyltransferase (TPMT) JOA57_13755 PF00210 Ferritin-like domain JOA57_13760 PF01804 Penicillin amidase JOA57_13765 PF00593 TonB dependent receptor JOA57_13765 PF07715 TonB-dependent Receptor Plug Domain JOA57_13775 PF13537 Glutamine amidotransferase domain JOA57_13775 PF00733 Asparagine synthase JOA57_13785 PF07687 Peptidase dimerisation domain JOA57_13785 PF01546 Peptidase family M20/M25/M40 JOA57_13790 PF03960 ArsC family JOA57_13800 PF00132 Bacterial transferase hexapeptide (six repeats) JOA57_13800 PF14602 Hexapeptide repeat of succinyl-transferase JOA57_13800 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal JOA57_13805 PF08335 GlnD PII-uridylyltransferase JOA57_13805 PF01966 HD domain JOA57_13805 PF01909 Nucleotidyltransferase domain JOA57_13810 PF00557 Metallopeptidase family M24 JOA57_13830 PF05229 Spore Coat Protein U domain JOA57_13845 PF00318 Ribosomal protein S2 JOA57_13850 PF00889 Elongation factor TS JOA57_13855 PF00990 Diguanylate cyclase, GGDEF domain JOA57_13855 PF00072 Response regulator receiver domain JOA57_13860 PF00696 Amino acid kinase family JOA57_13865 PF01765 Ribosome recycling factor JOA57_13870 PF01255 Putative undecaprenyl diphosphate synthase JOA57_13880 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JOA57_13880 PF13288 DXP reductoisomerase C-terminal domain JOA57_13880 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JOA57_13885 PF02163 Peptidase family M50 JOA57_13885 PF17820 PDZ domain JOA57_13890 PF01103 Surface antigen JOA57_13890 PF07244 Surface antigen variable number repeat JOA57_13900 PF00132 Bacterial transferase hexapeptide (six repeats) JOA57_13900 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JOA57_13905 PF07977 FabA-like domain JOA57_13910 PF00132 Bacterial transferase hexapeptide (six repeats) JOA57_13910 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JOA57_13915 PF02684 Lipid-A-disaccharide synthetase JOA57_13920 PF01351 Ribonuclease HII JOA57_13925 PF01336 OB-fold nucleic acid binding domain JOA57_13925 PF02811 PHP domain JOA57_13925 PF14579 Helix-hairpin-helix motif JOA57_13925 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JOA57_13925 PF07733 Bacterial DNA polymerase III alpha NTPase domain JOA57_13930 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JOA57_13940 PF03653 Uncharacterised protein family (UPF0093) JOA57_13965 PF03551 Transcriptional regulator PadR-like family JOA57_13990 PF02592 Putative vitamin uptake transporter JOA57_14000 PF02574 Homocysteine S-methyltransferase JOA57_14005 PF00324 Amino acid permease JOA57_14015 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JOA57_14025 PF07715 TonB-dependent Receptor Plug Domain JOA57_14025 PF00593 TonB dependent receptor JOA57_14030 PF01588 Putative tRNA binding domain JOA57_14030 PF09334 tRNA synthetases class I (M) JOA57_14040 PF04060 Putative Fe-S cluster JOA57_14055 PF04545 Sigma-70, region 4 JOA57_14055 PF04542 Sigma-70 region 2 JOA57_14100 PF01042 Endoribonuclease L-PSP JOA57_14110 PF03706 Lysylphosphatidylglycerol synthase TM region JOA57_14110 PF09924 Uncharacterised conserved protein (DUF2156) JOA57_14145 PF07690 Major Facilitator Superfamily JOA57_14150 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JOA57_14180 PF03831 PhnA domain JOA57_14180 PF08274 PhnA Zinc-Ribbon JOA57_14190 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JOA57_14235 PF01258 Prokaryotic dksA/traR C4-type zinc finger JOA57_14245 PF07043 Protein of unknown function (DUF1328) JOA57_14250 PF01863 Protein of unknown function DUF45 JOA57_14255 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JOA57_14255 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JOA57_14260 PF00082 Subtilase family JOA57_14260 PF03797 Autotransporter beta-domain JOA57_14265 PF02803 Thiolase, C-terminal domain JOA57_14265 PF00108 Thiolase, N-terminal domain JOA57_14280 PF00990 Diguanylate cyclase, GGDEF domain JOA57_14280 PF00072 Response regulator receiver domain JOA57_14300 PF04679 ATP dependent DNA ligase C terminal region JOA57_14300 PF01068 ATP dependent DNA ligase domain JOA57_14300 PF04675 DNA ligase N terminus JOA57_14310 PF04679 ATP dependent DNA ligase C terminal region JOA57_14310 PF01068 ATP dependent DNA ligase domain JOA57_14310 PF04675 DNA ligase N terminus JOA57_14315 PF00271 Helicase conserved C-terminal domain JOA57_14315 PF00270 DEAD/DEAH box helicase JOA57_14315 PF08494 DEAD/H associated JOA57_14325 PF01494 FAD binding domain JOA57_14330 PF00313 'Cold-shock' DNA-binding domain JOA57_14335 PF01048 Phosphorylase superfamily JOA57_14340 PF00156 Phosphoribosyl transferase domain JOA57_14345 PF00933 Glycosyl hydrolase family 3 N terminal domain JOA57_14350 PF04244 Deoxyribodipyrimidine photo-lyase-related protein JOA57_14355 PF01593 Flavin containing amine oxidoreductase JOA57_14360 PF01323 DSBA-like thioredoxin domain JOA57_14365 PF01928 CYTH domain JOA57_14375 PF05958 tRNA (Uracil-5-)-methyltransferase JOA57_14380 PF00486 Transcriptional regulatory protein, C terminal JOA57_14380 PF00072 Response regulator receiver domain JOA57_14385 PF11967 Recombination protein O N terminal JOA57_14385 PF02565 Recombination protein O C terminal JOA57_14390 PF07650 KH domain JOA57_14390 PF01926 50S ribosome-binding GTPase JOA57_14395 PF00035 Double-stranded RNA binding motif JOA57_14395 PF14622 Ribonuclease-III-like JOA57_14405 PF10502 Signal peptidase, peptidase S26 JOA57_14410 PF00679 Elongation factor G C-terminus JOA57_14410 PF00009 Elongation factor Tu GTP binding domain JOA57_14410 PF03144 Elongation factor Tu domain 2 JOA57_14410 PF06421 GTP-binding protein LepA C-terminus JOA57_14415 PF13180 PDZ domain JOA57_14425 PF04542 Sigma-70 region 2 JOA57_14425 PF08281 Sigma-70, region 4 JOA57_14430 PF00378 Enoyl-CoA hydratase/isomerase JOA57_14430 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JOA57_14430 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JOA57_14435 PF01545 Cation efflux family JOA57_14440 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JOA57_14440 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JOA57_14445 PF00378 Enoyl-CoA hydratase/isomerase JOA57_14445 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JOA57_14445 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JOA57_14450 PF00378 Enoyl-CoA hydratase/isomerase JOA57_14455 PF02770 Acyl-CoA dehydrogenase, middle domain JOA57_14455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JOA57_14455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JOA57_14460 PF00171 Aldehyde dehydrogenase family JOA57_14465 PF01381 Helix-turn-helix JOA57_14465 PF06114 IrrE N-terminal-like domain JOA57_14465 PF09856 Predicted transcriptional regulator (DUF2083) JOA57_14475 PF07745 Glycosyl hydrolase family 53 JOA57_14480 PF02837 Glycosyl hydrolases family 2, sugar binding domain JOA57_14480 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 JOA57_14480 PF00703 Glycosyl hydrolases family 2 JOA57_14480 PF16355 Domain of unknown function (DUF4982) JOA57_14480 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JOA57_14515 PF14310 Fibronectin type III-like domain JOA57_14515 PF00933 Glycosyl hydrolase family 3 N terminal domain JOA57_14515 PF01915 Glycosyl hydrolase family 3 C-terminal domain JOA57_14525 PF05598 Transposase domain (DUF772) JOA57_14525 PF01609 Transposase DDE domain JOA57_14535 PF01609 Transposase DDE domain JOA57_14535 PF05598 Transposase domain (DUF772) JOA57_14545 PF01527 Transposase JOA57_14560 PF01464 Transglycosylase SLT domain JOA57_14570 PF00263 Bacterial type II and III secretion system protein JOA57_14570 PF03958 Bacterial type II/III secretion system short domain JOA57_14585 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JOA57_14585 PF02874 ATP synthase alpha/beta family, beta-barrel domain JOA57_14585 PF18269 T3SS EscN ATPase C-terminal domain JOA57_14600 PF01514 Secretory protein of YscJ/FliF family JOA57_14615 PF01312 FlhB HrpN YscU SpaS Family JOA57_14620 PF00771 FHIPEP family JOA57_14635 PF00813 FliP family JOA57_14640 PF01313 Bacterial export proteins, family 3 JOA57_14670 PF03211 Pectate lyase JOA57_14680 PF05819 NolX protein JOA57_14690 PF00440 Bacterial regulatory proteins, tetR family JOA57_14695 PF00155 Aminotransferase class I and II JOA57_14705 PF00266 Aminotransferase class-V JOA57_14715 PF03301 Tryptophan 2,3-dioxygenase JOA57_14720 PF03301 Tryptophan 2,3-dioxygenase JOA57_14730 PF01624 MutS domain I JOA57_14730 PF05188 MutS domain II JOA57_14730 PF05192 MutS domain III JOA57_14730 PF05190 MutS family domain IV JOA57_14730 PF00488 MutS domain V JOA57_14740 PF00141 Peroxidase JOA57_14745 PF01479 S4 domain JOA57_14750 PF01554 MatE JOA57_14755 PF01245 Ribosomal protein L19 JOA57_14760 PF01746 tRNA (Guanine-1)-methyltransferase JOA57_14765 PF01782 RimM N-terminal domain JOA57_14765 PF05239 PRC-barrel domain JOA57_14770 PF00886 Ribosomal protein S16 JOA57_14780 PF03060 Nitronate monooxygenase JOA57_14785 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) JOA57_14795 PF00448 SRP54-type protein, GTPase domain JOA57_14795 PF02881 SRP54-type protein, helical bundle domain JOA57_14795 PF02978 Signal peptide binding domain JOA57_14800 PF01578 Cytochrome C assembly protein JOA57_14805 PF01263 Aldose 1-epimerase JOA57_14810 PF06964 Alpha-L-arabinofuranosidase C-terminal domain JOA57_14815 PF03466 LysR substrate binding domain JOA57_14815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_14835 PF00072 Response regulator receiver domain JOA57_14840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_14840 PF13426 PAS domain JOA57_14840 PF00072 Response regulator receiver domain JOA57_14845 PF00672 HAMP domain JOA57_14845 PF00512 His Kinase A (phospho-acceptor) domain JOA57_14845 PF01627 Hpt domain JOA57_14845 PF00072 Response regulator receiver domain JOA57_14845 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JOA57_14845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_14850 PF01739 CheR methyltransferase, SAM binding domain JOA57_14850 PF03705 CheR methyltransferase, all-alpha domain JOA57_14855 PF01339 CheB methylesterase JOA57_14860 PF13493 Domain of unknown function (DUF4118) JOA57_14860 PF13492 GAF domain JOA57_14860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_14860 PF00512 His Kinase A (phospho-acceptor) domain JOA57_14860 PF02702 Osmosensitive K+ channel His kinase sensor domain JOA57_14865 PF07237 Protein of unknown function (DUF1428) JOA57_14870 PF00085 Thioredoxin JOA57_14880 PF07715 TonB-dependent Receptor Plug Domain JOA57_14880 PF00593 TonB dependent receptor JOA57_14885 PF04616 Glycosyl hydrolases family 43 JOA57_14885 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain JOA57_14890 PF13188 PAS domain JOA57_14890 PF08448 PAS fold JOA57_14890 PF00512 His Kinase A (phospho-acceptor) domain JOA57_14890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_14890 PF00072 Response regulator receiver domain JOA57_14895 PF00072 Response regulator receiver domain JOA57_14895 PF01627 Hpt domain JOA57_14895 PF00512 His Kinase A (phospho-acceptor) domain JOA57_14895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_14895 PF00672 HAMP domain JOA57_14895 PF17149 Periplasmic sensor domain found in signal transduction proteins JOA57_14905 PF13581 Histidine kinase-like ATPase domain JOA57_14910 PF01740 STAS domain JOA57_14915 PF08678 Rsbr N terminal JOA57_14915 PF01740 STAS domain JOA57_14920 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JOA57_14930 PF00183 Hsp90 protein JOA57_14930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_14935 PF12833 Helix-turn-helix domain JOA57_14945 PF05656 Protein of unknown function (DUF805) JOA57_14950 PF18073 Rubredoxin metal binding domain JOA57_14960 PF03626 Prokaryotic Cytochrome C oxidase subunit IV JOA57_14965 PF00510 Cytochrome c oxidase subunit III JOA57_14970 PF00115 Cytochrome C and Quinol oxidase polypeptide I JOA57_14975 PF06481 COX Aromatic Rich Motif JOA57_14975 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JOA57_14985 PF02401 LytB protein JOA57_14990 PF01252 Signal peptidase (SPase) II JOA57_14995 PF08264 Anticodon-binding domain of tRNA JOA57_14995 PF00133 tRNA synthetases class I (I, L, M and V) JOA57_14995 PF06827 Zinc finger found in FPG and IleRS JOA57_15000 PF01687 Riboflavin kinase JOA57_15000 PF06574 FAD synthetase JOA57_15005 PF03023 Lipid II flippase MurJ JOA57_15010 PF01649 Ribosomal protein S20 JOA57_15015 PF01926 50S ribosome-binding GTPase JOA57_15015 PF01018 GTP1/OBG JOA57_15020 PF01016 Ribosomal L27 protein JOA57_15025 PF00829 Ribosomal prokaryotic L21 protein JOA57_15030 PF00005 ABC transporter JOA57_15030 PF17760 UvrA interaction domain JOA57_15030 PF17755 UvrA DNA-binding domain JOA57_15040 PF00378 Enoyl-CoA hydratase/isomerase JOA57_15060 PF04542 Sigma-70 region 2 JOA57_15060 PF08281 Sigma-70, region 4 JOA57_15070 PF04376 Arginine-tRNA-protein transferase, N terminus JOA57_15070 PF04377 Arginine-tRNA-protein transferase, C terminus JOA57_15090 PF02222 ATP-grasp domain JOA57_15090 PF01370 NAD dependent epimerase/dehydratase family JOA57_15120 PF00730 HhH-GPD superfamily base excision DNA repair protein JOA57_15150 PF00196 Bacterial regulatory proteins, luxR family JOA57_15150 PF00072 Response regulator receiver domain JOA57_15155 PF07730 Histidine kinase JOA57_15165 PF03775 Septum formation inhibitor MinC, C-terminal domain JOA57_15165 PF05209 Septum formation inhibitor MinC, N-terminal domain JOA57_15170 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JOA57_15175 PF03776 Septum formation topological specificity factor MinE JOA57_15185 PF00512 His Kinase A (phospho-acceptor) domain JOA57_15185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_15190 PF00486 Transcriptional regulatory protein, C terminal JOA57_15190 PF00072 Response regulator receiver domain JOA57_15205 PF08019 Phosphoethanolamine transferase EptA/EptB JOA57_15205 PF00884 Sulfatase JOA57_15225 PF07690 Major Facilitator Superfamily JOA57_15230 PF02347 Glycine cleavage system P-protein JOA57_15245 PF00248 Aldo/keto reductase family JOA57_15250 PF06628 Catalase-related immune-responsive JOA57_15250 PF00199 Catalase JOA57_15250 PF18011 C-terminal domain found in long catalases JOA57_15265 PF12833 Helix-turn-helix domain JOA57_15265 PF02311 AraC-like ligand binding domain JOA57_15285 PF00326 Prolyl oligopeptidase family JOA57_15285 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region JOA57_15285 PF07676 WD40-like Beta Propeller Repeat JOA57_15295 PF03169 OPT oligopeptide transporter protein JOA57_15305 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JOA57_15305 PF02811 PHP domain JOA57_15305 PF07733 Bacterial DNA polymerase III alpha NTPase domain JOA57_15305 PF14579 Helix-hairpin-helix motif JOA57_15320 PF01726 LexA DNA binding domain JOA57_15320 PF00717 Peptidase S24-like JOA57_15350 PF01799 [2Fe-2S] binding domain JOA57_15350 PF10518 TAT (twin-arginine translocation) pathway signal sequence JOA57_15350 PF00111 2Fe-2S iron-sulfur cluster binding domain JOA57_15355 PF03450 CO dehydrogenase flavoprotein C-terminal domain JOA57_15355 PF00941 FAD binding domain in molybdopterin dehydrogenase JOA57_15360 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JOA57_15360 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JOA57_15365 PF00933 Glycosyl hydrolase family 3 N terminal domain JOA57_15365 PF01915 Glycosyl hydrolase family 3 C-terminal domain JOA57_15365 PF14310 Fibronectin type III-like domain JOA57_15375 PF17755 UvrA DNA-binding domain JOA57_15395 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOA57_15405 PF00106 short chain dehydrogenase JOA57_15410 PF07971 Glycosyl hydrolase family 92 JOA57_15410 PF17678 Glycosyl hydrolase family 92 N-terminal domain JOA57_15425 PF00723 Glycosyl hydrolases family 15 JOA57_15435 PF01256 Carbohydrate kinase JOA57_15440 PF00300 Histidine phosphatase superfamily (branch 1) JOA57_15440 PF13456 Reverse transcriptase-like JOA57_15505 PF05598 Transposase domain (DUF772) JOA57_15505 PF01609 Transposase DDE domain JOA57_15520 PF01433 Peptidase family M1 domain JOA57_15520 PF11838 ERAP1-like C-terminal domain JOA57_15525 PF00709 Adenylosuccinate synthetase JOA57_15535 PF01145 SPFH domain / Band 7 family JOA57_15540 PF01145 SPFH domain / Band 7 family JOA57_15540 PF12221 Bacterial membrane protein N terminal JOA57_15545 PF00072 Response regulator receiver domain JOA57_15550 PF01556 DnaJ C terminal domain JOA57_15550 PF00226 DnaJ domain JOA57_15555 PF00011 Hsp20/alpha crystallin family JOA57_15560 PF08534 Redoxin JOA57_15570 PF06832 Penicillin-Binding Protein C-terminus Family JOA57_15570 PF00912 Transglycosylase JOA57_15570 PF00905 Penicillin binding protein transpeptidase domain JOA57_15595 PF00207 Alpha-2-macroglobulin family JOA57_15595 PF07703 Alpha-2-macroglobulin bait region domain JOA57_15595 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain JOA57_15595 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain JOA57_15595 PF17962 Bacterial macroglobulin domain 6 JOA57_15595 PF01835 MG2 domain JOA57_15595 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain JOA57_15595 PF11974 Bacterial alpha-2-macroglobulin MG3 domain JOA57_15610 PF07715 TonB-dependent Receptor Plug Domain JOA57_15610 PF00593 TonB dependent receptor JOA57_15615 PF04303 PrpF protein JOA57_15625 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH JOA57_15630 PF00330 Aconitase family (aconitate hydratase) JOA57_15630 PF00694 Aconitase C-terminal domain JOA57_15635 PF00285 Citrate synthase, C-terminal domain JOA57_15645 PF02954 Bacterial regulatory protein, Fis family JOA57_15645 PF00158 Sigma-54 interaction domain JOA57_15645 PF06506 Propionate catabolism activator JOA57_15680 PF09115 DNA polymerase III, delta subunit, C terminal JOA57_15685 PF02618 YceG-like family JOA57_15690 PF00425 chorismate binding enzyme JOA57_15690 PF04715 Anthranilate synthase component I, N terminal region JOA57_15695 PF00109 Beta-ketoacyl synthase, N-terminal domain JOA57_15695 PF02801 Beta-ketoacyl synthase, C-terminal domain JOA57_15700 PF00550 Phosphopantetheine attachment site JOA57_15710 PF00698 Acyl transferase domain JOA57_15715 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JOA57_15715 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JOA57_15720 PF01783 Ribosomal L32p protein family JOA57_15725 PF02620 Large ribosomal RNA subunit accumulation protein YceD JOA57_15730 PF02545 Maf-like protein JOA57_15750 PF00535 Glycosyl transferase family 2 JOA57_15760 PF07726 ATPase family associated with various cellular activities (AAA) JOA57_15760 PF17863 AAA lid domain JOA57_15770 PF01841 Transglutaminase-like superfamily JOA57_15770 PF13559 Domain of unknown function (DUF4129) JOA57_15770 PF11992 Domain of unknown function (DUF3488) JOA57_15780 PF01230 HIT domain JOA57_15785 PF13662 Toprim domain JOA57_15785 PF02132 RecR protein JOA57_15790 PF02575 YbaB/EbfC DNA-binding family JOA57_15795 PF12169 DNA polymerase III subunits gamma and tau domain III JOA57_15795 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JOA57_15795 PF12170 DNA polymerase III tau subunit V interacting with alpha JOA57_15810 PF02391 MoaE protein JOA57_15815 PF02597 ThiS family JOA57_15820 PF01967 MoaC family JOA57_15830 PF06463 Molybdenum Cofactor Synthesis C JOA57_15830 PF04055 Radical SAM superfamily JOA57_15835 PF12706 Beta-lactamase superfamily domain JOA57_15835 PF00753 Metallo-beta-lactamase superfamily JOA57_15845 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JOA57_15865 PF00929 Exonuclease JOA57_15870 PF00075 RNase H JOA57_15880 PF16123 Hydroxyacylglutathione hydrolase C-terminus JOA57_15880 PF00753 Metallo-beta-lactamase superfamily JOA57_15885 PF05257 CHAP domain JOA57_15885 PF01476 LysM domain JOA57_15910 PF00216 Bacterial DNA-binding protein JOA57_15915 PF00004 ATPase family associated with various cellular activities (AAA) JOA57_15915 PF05362 Lon protease (S16) C-terminal proteolytic domain JOA57_15915 PF02190 ATP-dependent protease La (LON) substrate-binding domain JOA57_15920 PF06689 ClpX C4-type zinc finger JOA57_15920 PF07724 AAA domain (Cdc48 subfamily) JOA57_15920 PF10431 C-terminal, D2-small domain, of ClpB protein JOA57_15925 PF00574 Clp protease JOA57_15930 PF05698 Bacterial trigger factor protein (TF) C-terminus JOA57_15930 PF05697 Bacterial trigger factor protein (TF) JOA57_15965 PF00180 Isocitrate/isopropylmalate dehydrogenase JOA57_15965 PF18324 Hypothetical protein TT1725 JOA57_15975 PF00462 Glutaredoxin JOA57_15980 PF01435 Peptidase family M48 JOA57_15980 PF13181 Tetratricopeptide repeat JOA57_15985 PF00072 Response regulator receiver domain JOA57_15985 PF00486 Transcriptional regulatory protein, C terminal JOA57_15990 PF11808 Phosphate regulon sensor protein PhoR JOA57_15990 PF00989 PAS fold JOA57_15990 PF00512 His Kinase A (phospho-acceptor) domain JOA57_15990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_15995 PF02503 Polyphosphate kinase middle domain JOA57_15995 PF13090 Polyphosphate kinase C-terminal domain 2 JOA57_15995 PF17941 Polyphosphate kinase C-terminal domain 1 JOA57_15995 PF13089 Polyphosphate kinase N-terminal domain JOA57_16000 PF02541 Ppx/GppA phosphatase family JOA57_16005 PF13439 Glycosyltransferase Family 4 JOA57_16005 PF00534 Glycosyl transferases group 1 JOA57_16010 PF01569 PAP2 superfamily JOA57_16015 PF00149 Calcineurin-like phosphoesterase JOA57_16030 PF04305 Protein of unknown function (DUF455) JOA57_16035 PF00156 Phosphoribosyl transferase domain JOA57_16050 PF02875 Mur ligase family, glutamate ligase domain JOA57_16050 PF08245 Mur ligase middle domain JOA57_16065 PF00300 Histidine phosphatase superfamily (branch 1) JOA57_16070 PF05506 Domain of unknown function (DUF756) JOA57_16070 PF04185 Phosphoesterase family JOA57_16080 PF00107 Zinc-binding dehydrogenase JOA57_16080 PF08240 Alcohol dehydrogenase GroES-like domain JOA57_16090 PF00005 ABC transporter JOA57_16090 PF12857 TOBE-like domain JOA57_16095 PF00528 Binding-protein-dependent transport system inner membrane component JOA57_16100 PF00528 Binding-protein-dependent transport system inner membrane component JOA57_16110 PF00155 Aminotransferase class I and II JOA57_16120 PF00849 RNA pseudouridylate synthase JOA57_16130 PF00691 OmpA family JOA57_16130 PF05736 OprF membrane domain JOA57_16135 PF08240 Alcohol dehydrogenase GroES-like domain JOA57_16135 PF00107 Zinc-binding dehydrogenase JOA57_16140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JOA57_16140 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOA57_16165 PF00043 Glutathione S-transferase, C-terminal domain JOA57_16165 PF02798 Glutathione S-transferase, N-terminal domain JOA57_16170 PF00056 lactate/malate dehydrogenase, NAD binding domain JOA57_16170 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JOA57_16175 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JOA57_16180 PF00679 Elongation factor G C-terminus JOA57_16180 PF00009 Elongation factor Tu GTP binding domain JOA57_16180 PF03144 Elongation factor Tu domain 2 JOA57_16190 PF01425 Amidase JOA57_16200 PF01474 Class-II DAHP synthetase family JOA57_16205 PF02600 Disulfide bond formation protein DsbB JOA57_16210 PF01196 Ribosomal protein L17 JOA57_16215 PF01000 RNA polymerase Rpb3/RpoA insert domain JOA57_16215 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JOA57_16215 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JOA57_16220 PF00163 Ribosomal protein S4/S9 N-terminal domain JOA57_16220 PF01479 S4 domain JOA57_16225 PF00411 Ribosomal protein S11 JOA57_16230 PF00416 Ribosomal protein S13/S18 JOA57_16235 PF00344 SecY translocase JOA57_16240 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JOA57_16245 PF00327 Ribosomal protein L30p/L7e JOA57_16250 PF03719 Ribosomal protein S5, C-terminal domain JOA57_16250 PF00333 Ribosomal protein S5, N-terminal domain JOA57_16255 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JOA57_16260 PF00347 Ribosomal protein L6 JOA57_16265 PF00410 Ribosomal protein S8 JOA57_16270 PF00253 Ribosomal protein S14p/S29e JOA57_16275 PF00281 Ribosomal protein L5 JOA57_16275 PF00673 ribosomal L5P family C-terminus JOA57_16280 PF00467 KOW motif JOA57_16280 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JOA57_16285 PF00238 Ribosomal protein L14p/L23e JOA57_16290 PF00366 Ribosomal protein S17 JOA57_16295 PF00831 Ribosomal L29 protein JOA57_16300 PF00252 Ribosomal protein L16p/L10e JOA57_16305 PF07650 KH domain JOA57_16305 PF00189 Ribosomal protein S3, C-terminal domain JOA57_16310 PF00237 Ribosomal protein L22p/L17e JOA57_16315 PF00203 Ribosomal protein S19 JOA57_16320 PF00181 Ribosomal Proteins L2, RNA binding domain JOA57_16320 PF03947 Ribosomal Proteins L2, C-terminal domain JOA57_16325 PF00276 Ribosomal protein L23 JOA57_16330 PF00573 Ribosomal protein L4/L1 family JOA57_16335 PF00297 Ribosomal protein L3 JOA57_16340 PF00338 Ribosomal protein S10p/S20e JOA57_16345 PF03143 Elongation factor Tu C-terminal domain JOA57_16345 PF03144 Elongation factor Tu domain 2 JOA57_16345 PF00009 Elongation factor Tu GTP binding domain JOA57_16350 PF00679 Elongation factor G C-terminus JOA57_16350 PF14492 Elongation Factor G, domain II JOA57_16350 PF03764 Elongation factor G, domain IV JOA57_16350 PF00009 Elongation factor Tu GTP binding domain JOA57_16350 PF03144 Elongation factor Tu domain 2 JOA57_16355 PF00177 Ribosomal protein S7p/S5e JOA57_16360 PF00164 Ribosomal protein S12/S23 JOA57_16365 PF04997 RNA polymerase Rpb1, domain 1 JOA57_16365 PF00623 RNA polymerase Rpb1, domain 2 JOA57_16365 PF04983 RNA polymerase Rpb1, domain 3 JOA57_16365 PF05000 RNA polymerase Rpb1, domain 4 JOA57_16365 PF04998 RNA polymerase Rpb1, domain 5 JOA57_16370 PF00562 RNA polymerase Rpb2, domain 6 JOA57_16370 PF04560 RNA polymerase Rpb2, domain 7 JOA57_16370 PF04565 RNA polymerase Rpb2, domain 3 JOA57_16370 PF04563 RNA polymerase beta subunit JOA57_16370 PF10385 RNA polymerase beta subunit external 1 domain JOA57_16370 PF04561 RNA polymerase Rpb2, domain 2 JOA57_16375 PF16320 Ribosomal protein L7/L12 dimerisation domain JOA57_16375 PF00542 Ribosomal protein L7/L12 C-terminal domain JOA57_16380 PF00466 Ribosomal protein L10 JOA57_16385 PF00687 Ribosomal protein L1p/L10e family JOA57_16390 PF03946 Ribosomal protein L11, N-terminal domain JOA57_16390 PF00298 Ribosomal protein L11, RNA binding domain JOA57_16395 PF02357 Transcription termination factor nusG JOA57_16395 PF00467 KOW motif JOA57_16400 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JOA57_16410 PF00009 Elongation factor Tu GTP binding domain JOA57_16410 PF03143 Elongation factor Tu C-terminal domain JOA57_16410 PF03144 Elongation factor Tu domain 2 JOA57_16430 PF01926 50S ribosome-binding GTPase JOA57_16430 PF06071 Protein of unknown function (DUF933) JOA57_16435 PF01195 Peptidyl-tRNA hydrolase JOA57_16440 PF01386 Ribosomal L25p family JOA57_16440 PF14693 Ribosomal protein TL5, C-terminal domain JOA57_16445 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JOA57_16445 PF14572 Phosphoribosyl synthetase-associated domain JOA57_16455 PF08544 GHMP kinases C terminal JOA57_16455 PF00288 GHMP kinases N terminal domain JOA57_16460 PF03550 Outer membrane lipoprotein LolB JOA57_16470 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JOA57_16470 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JOA57_16470 PF01488 Shikimate / quinate 5-dehydrogenase JOA57_16475 PF03462 PCRF domain JOA57_16475 PF00472 RF-1 domain JOA57_16485 PF00994 Probable molybdopterin binding domain JOA57_16490 PF03976 Polyphosphate kinase 2 (PPK2) JOA57_16500 PF00708 Acylphosphatase JOA57_16505 PF08534 Redoxin JOA57_16510 PF03631 Virulence factor BrkB JOA57_16515 PF03358 NADPH-dependent FMN reductase JOA57_16535 PF04073 Aminoacyl-tRNA editing domain JOA57_16540 PF00082 Subtilase family JOA57_16540 PF04151 Bacterial pre-peptidase C-terminal domain JOA57_16550 PF00082 Subtilase family JOA57_16550 PF04151 Bacterial pre-peptidase C-terminal domain JOA57_16555 PF01063 Amino-transferase class IV JOA57_16620 PF00881 Nitroreductase family JOA57_16625 PF01367 5'-3' exonuclease, C-terminal SAM fold JOA57_16625 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JOA57_16625 PF00476 DNA polymerase family A JOA57_16625 PF01612 3'-5' exonuclease JOA57_16630 PF00293 NUDIX domain JOA57_16640 PF00561 alpha/beta hydrolase fold JOA57_16645 PF05175 Methyltransferase small domain JOA57_16645 PF17827 PrmC N-terminal domain JOA57_16650 PF10417 C-terminal domain of 1-Cys peroxiredoxin JOA57_16650 PF00578 AhpC/TSA family JOA57_16655 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOA57_16655 PF13192 Thioredoxin domain JOA57_16660 PF03466 LysR substrate binding domain JOA57_16660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_16665 PF01272 Transcription elongation factor, GreA/GreB, C-term JOA57_16665 PF14760 Rnk N-terminus JOA57_16670 PF00923 Transaldolase/Fructose-6-phosphate aldolase JOA57_16680 PF01625 Peptide methionine sulfoxide reductase JOA57_16690 PF00196 Bacterial regulatory proteins, luxR family JOA57_16690 PF00072 Response regulator receiver domain JOA57_16695 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JOA57_16695 PF00672 HAMP domain JOA57_16695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_16695 PF00512 His Kinase A (phospho-acceptor) domain JOA57_16695 PF01627 Hpt domain JOA57_16695 PF00072 Response regulator receiver domain JOA57_16700 PF00990 Diguanylate cyclase, GGDEF domain JOA57_16700 PF00072 Response regulator receiver domain JOA57_16715 PF00749 tRNA synthetases class I (E and Q), catalytic domain JOA57_16715 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JOA57_16720 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JOA57_16720 PF12833 Helix-turn-helix domain JOA57_16725 PF00892 EamA-like transporter family JOA57_16745 PF01728 FtsJ-like methyltransferase JOA57_16745 PF18125 RlmM ferredoxin-like domain JOA57_16750 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JOA57_16750 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JOA57_16755 PF08450 SMP-30/Gluconolactonase/LRE-like region JOA57_16775 PF00378 Enoyl-CoA hydratase/isomerase JOA57_16785 PF00501 AMP-binding enzyme JOA57_16785 PF13193 AMP-binding enzyme C-terminal domain JOA57_16790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_16790 PF03466 LysR substrate binding domain JOA57_16795 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit JOA57_16795 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JOA57_16800 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JOA57_16805 PF07729 FCD domain JOA57_16805 PF00392 Bacterial regulatory proteins, gntR family JOA57_16825 PF01494 FAD binding domain JOA57_16830 PF01494 FAD binding domain JOA57_16840 PF01923 Cobalamin adenosyltransferase JOA57_16845 PF00850 Histone deacetylase domain JOA57_16850 PF03968 OstA-like protein JOA57_16850 PF04453 LPS transport system D JOA57_16855 PF00639 PPIC-type PPIASE domain JOA57_16855 PF09312 SurA N-terminal domain JOA57_16860 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JOA57_16865 PF00398 Ribosomal RNA adenine dimethylase JOA57_16870 PF04379 ApaG domain JOA57_16875 PF00149 Calcineurin-like phosphoesterase JOA57_16880 PF00186 Dihydrofolate reductase JOA57_16885 PF00303 Thymidylate synthase JOA57_16890 PF01790 Prolipoprotein diacylglyceryl transferase JOA57_16910 PF01219 Prokaryotic diacylglycerol kinase JOA57_16920 PF08521 Two-component sensor kinase N-terminal JOA57_16920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_16920 PF00512 His Kinase A (phospho-acceptor) domain JOA57_16925 PF00072 Response regulator receiver domain JOA57_16925 PF00486 Transcriptional regulatory protein, C terminal JOA57_16930 PF13472 GDSL-like Lipase/Acylhydrolase family JOA57_16935 PF00005 ABC transporter JOA57_16945 PF02668 Taurine catabolism dioxygenase TauD, TfdA family JOA57_16955 PF00005 ABC transporter JOA57_16960 PF00528 Binding-protein-dependent transport system inner membrane component JOA57_16980 PF00593 TonB dependent receptor JOA57_16980 PF07715 TonB-dependent Receptor Plug Domain JOA57_16995 PF00248 Aldo/keto reductase family JOA57_17000 PF07670 Nucleoside recognition JOA57_17000 PF07662 Na+ dependent nucleoside transporter C-terminus JOA57_17000 PF01773 Na+ dependent nucleoside transporter N-terminus JOA57_17005 PF00294 pfkB family carbohydrate kinase JOA57_17005 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JOA57_17010 PF01207 Dihydrouridine synthase (Dus) JOA57_17020 PF02773 S-adenosylmethionine synthetase, C-terminal domain JOA57_17020 PF02772 S-adenosylmethionine synthetase, central domain JOA57_17020 PF00438 S-adenosylmethionine synthetase, N-terminal domain JOA57_17030 PF00328 Histidine phosphatase superfamily (branch 2) JOA57_17045 PF00691 OmpA family JOA57_17045 PF01389 OmpA-like transmembrane domain JOA57_17065 PF00311 Phosphoenolpyruvate carboxylase JOA57_17075 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JOA57_17075 PF05221 S-adenosyl-L-homocysteine hydrolase JOA57_17105 PF00128 Alpha amylase, catalytic domain JOA57_17130 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JOA57_17145 PF08240 Alcohol dehydrogenase GroES-like domain JOA57_17145 PF00107 Zinc-binding dehydrogenase JOA57_17145 PF16197 Ketoacyl-synthetase C-terminal extension JOA57_17145 PF00109 Beta-ketoacyl synthase, N-terminal domain JOA57_17145 PF02801 Beta-ketoacyl synthase, C-terminal domain JOA57_17145 PF08659 KR domain JOA57_17145 PF00550 Phosphopantetheine attachment site JOA57_17145 PF14765 Polyketide synthase dehydratase JOA57_17145 PF00698 Acyl transferase domain JOA57_17160 PF02219 Methylenetetrahydrofolate reductase JOA57_17175 PF00293 NUDIX domain JOA57_17185 PF07517 SecA DEAD-like domain JOA57_17185 PF02810 SEC-C motif JOA57_17185 PF01043 SecA preprotein cross-linking domain JOA57_17185 PF07516 SecA Wing and Scaffold domain JOA57_17190 PF01551 Peptidase family M23 JOA57_17190 PF01476 LysM domain JOA57_17190 PF08525 Opacity-associated protein A N-terminal motif JOA57_17200 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JOA57_17205 PF12327 FtsZ family, C-terminal domain JOA57_17205 PF00091 Tubulin/FtsZ family, GTPase domain JOA57_17210 PF02491 SHS2 domain inserted in FTSA JOA57_17215 PF08478 POTRA domain, FtsQ-type JOA57_17215 PF03799 Cell division protein FtsQ JOA57_17220 PF07478 D-ala D-ala ligase C-terminus JOA57_17220 PF01820 D-ala D-ala ligase N-terminus JOA57_17225 PF02875 Mur ligase family, glutamate ligase domain JOA57_17225 PF01225 Mur ligase family, catalytic domain JOA57_17225 PF08245 Mur ligase middle domain JOA57_17230 PF04101 Glycosyltransferase family 28 C-terminal domain JOA57_17230 PF03033 Glycosyltransferase family 28 N-terminal domain JOA57_17235 PF01098 Cell cycle protein JOA57_17240 PF00953 Glycosyl transferase family 4 JOA57_17245 PF02875 Mur ligase family, glutamate ligase domain JOA57_17245 PF08245 Mur ligase middle domain JOA57_17245 PF01225 Mur ligase family, catalytic domain JOA57_17250 PF01225 Mur ligase family, catalytic domain JOA57_17250 PF02875 Mur ligase family, glutamate ligase domain JOA57_17250 PF08245 Mur ligase middle domain JOA57_17255 PF03717 Penicillin-binding Protein dimerisation domain JOA57_17255 PF00905 Penicillin binding protein transpeptidase domain JOA57_17260 PF04999 Cell division protein FtsL JOA57_17265 PF01795 MraW methylase family JOA57_17270 PF02381 MraZ protein, putative antitoxin-like JOA57_17295 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JOA57_17305 PF02021 Uncharacterised protein family UPF0102 JOA57_17310 PF04307 LexA-binding, inner membrane-associated putative hydrolase JOA57_17315 PF01565 FAD binding domain JOA57_17315 PF02913 FAD linked oxidases, C-terminal domain JOA57_17325 PF00072 Response regulator receiver domain JOA57_17325 PF00486 Transcriptional regulatory protein, C terminal JOA57_17330 PF13493 Domain of unknown function (DUF4118) JOA57_17330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_17330 PF00512 His Kinase A (phospho-acceptor) domain JOA57_17330 PF02702 Osmosensitive K+ channel His kinase sensor domain JOA57_17330 PF13492 GAF domain JOA57_17335 PF02669 K+-transporting ATPase, c chain JOA57_17345 PF03814 Potassium-transporting ATPase A subunit JOA57_17360 PF00586 AIR synthase related protein, N-terminal domain JOA57_17360 PF02769 AIR synthase related protein, C-terminal domain JOA57_17365 PF01029 NusB family JOA57_17370 PF00885 6,7-dimethyl-8-ribityllumazine synthase JOA57_17375 PF00925 GTP cyclohydrolase II JOA57_17375 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JOA57_17380 PF00677 Lumazine binding domain JOA57_17390 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JOA57_17390 PF01872 RibD C-terminal domain JOA57_17400 PF03477 ATP cone domain JOA57_17405 PF00464 Serine hydroxymethyltransferase JOA57_17415 PF00005 ABC transporter JOA57_17415 PF12848 ABC transporter JOA57_17420 PF01327 Polypeptide deformylase JOA57_17425 PF03960 ArsC family JOA57_17450 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JOA57_17450 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JOA57_17485 PF00593 TonB dependent receptor JOA57_17485 PF07715 TonB-dependent Receptor Plug Domain JOA57_17495 PF00392 Bacterial regulatory proteins, gntR family JOA57_17495 PF07702 UTRA domain JOA57_17505 PF00263 Bacterial type II and III secretion system protein JOA57_17505 PF03958 Bacterial type II/III secretion system short domain JOA57_17515 PF10741 Type II secretion system (T2SS), protein M subtype b JOA57_17520 PF05137 Fimbrial assembly protein (PilN) JOA57_17525 PF03934 Type II secretion system (T2SS), protein K JOA57_17535 PF07963 Prokaryotic N-terminal methylation motif JOA57_17540 PF12019 Type II transport protein GspH JOA57_17545 PF08334 Type II secretion system (T2SS), protein G JOA57_17550 PF00482 Type II secretion system (T2SS), protein F JOA57_17555 PF00437 Type II/IV secretion system protein JOA57_17555 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JOA57_17560 PF00082 Subtilase family JOA57_17560 PF04151 Bacterial pre-peptidase C-terminal domain JOA57_17565 PF03895 YadA-like membrane anchor domain JOA57_17565 PF05658 Head domain of trimeric autotransporter adhesin JOA57_17565 PF05662 Coiled stalk of trimeric autotransporter adhesin JOA57_17565 PF13018 Extended Signal Peptide of Type V secretion system JOA57_17575 PF02769 AIR synthase related protein, C-terminal domain JOA57_17575 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JOA57_17575 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JOA57_17580 PF10411 Disulfide bond isomerase protein N-terminus JOA57_17580 PF13098 Thioredoxin-like domain JOA57_17585 PF02899 Phage integrase, N-terminal SAM-like domain JOA57_17585 PF00589 Phage integrase family JOA57_17600 PF03739 Lipopolysaccharide export system permease LptF/LptG JOA57_17610 PF00883 Cytosol aminopeptidase family, catalytic domain JOA57_17610 PF02789 Cytosol aminopeptidase family, N-terminal domain JOA57_17630 PF08264 Anticodon-binding domain of tRNA JOA57_17630 PF10458 Valyl tRNA synthetase tRNA binding arm JOA57_17630 PF00133 tRNA synthetases class I (I, L, M and V) JOA57_17640 PF00544 Pectate lyase JOA57_17645 PF00544 Pectate lyase JOA57_17660 PF01066 CDP-alcohol phosphatidyltransferase JOA57_17670 PF04073 Aminoacyl-tRNA editing domain JOA57_17670 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JOA57_17670 PF03129 Anticodon binding domain JOA57_17675 PF00816 H-NS histone family JOA57_17685 PF02405 Permease MlaE JOA57_17690 PF00005 ABC transporter JOA57_17695 PF02470 MlaD protein JOA57_17695 PF03886 ABC-type transport auxiliary lipoprotein component JOA57_17720 PF14307 Glycosyltransferase WbsX JOA57_17720 PF05045 Rhamnan synthesis protein F JOA57_17725 PF01144 Coenzyme A transferase JOA57_17730 PF01144 Coenzyme A transferase JOA57_17735 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JOA57_17735 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JOA57_17735 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JOA57_17735 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JOA57_17740 PF01050 Mannose-6-phosphate isomerase JOA57_17740 PF00483 Nucleotidyl transferase JOA57_17745 PF04321 RmlD substrate binding domain JOA57_17750 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JOA57_17755 PF00483 Nucleotidyl transferase JOA57_17760 PF16363 GDP-mannose 4,6 dehydratase JOA57_17765 PF01012 Electron transfer flavoprotein domain JOA57_17770 PF01012 Electron transfer flavoprotein domain JOA57_17770 PF00766 Electron transfer flavoprotein FAD-binding domain JOA57_17780 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JOA57_17785 PF00535 Glycosyl transferase family 2 JOA57_17805 PF16363 GDP-mannose 4,6 dehydratase JOA57_17810 PF16363 GDP-mannose 4,6 dehydratase JOA57_17825 PF13439 Glycosyltransferase Family 4 JOA57_17825 PF00534 Glycosyl transferases group 1 JOA57_17830 PF13847 Methyltransferase domain JOA57_17830 PF00069 Protein kinase domain JOA57_17835 PF00005 ABC transporter JOA57_17850 PF01053 Cys/Met metabolism PLP-dependent enzyme JOA57_17855 PF00291 Pyridoxal-phosphate dependent enzyme JOA57_17855 PF00571 CBS domain JOA57_17875 PF00437 Type II/IV secretion system protein JOA57_17880 PF14497 Glutathione S-transferase, C-terminal domain JOA57_17880 PF02798 Glutathione S-transferase, N-terminal domain JOA57_17890 PF00271 Helicase conserved C-terminal domain JOA57_17890 PF00270 DEAD/DEAH box helicase JOA57_17895 PF01242 6-pyruvoyl tetrahydropterin synthase JOA57_17910 PF13185 GAF domain JOA57_17920 PF13419 Haloacid dehalogenase-like hydrolase JOA57_17925 PF11799 impB/mucB/samB family C-terminal domain JOA57_17925 PF00817 impB/mucB/samB family JOA57_17925 PF11798 IMS family HHH motif JOA57_17930 PF07977 FabA-like domain JOA57_17935 PF02801 Beta-ketoacyl synthase, C-terminal domain JOA57_17935 PF00109 Beta-ketoacyl synthase, N-terminal domain JOA57_17940 PF01432 Peptidase family M3 JOA57_17945 PF00291 Pyridoxal-phosphate dependent enzyme JOA57_17955 PF00394 Multicopper oxidase JOA57_17955 PF07731 Multicopper oxidase JOA57_17955 PF07732 Multicopper oxidase JOA57_17960 PF05275 Copper resistance protein B precursor (CopB) JOA57_17965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JOA57_17995 PF01380 SIS domain JOA57_18000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOA57_18005 PF00005 ABC transporter JOA57_18010 PF12704 MacB-like periplasmic core domain JOA57_18010 PF02687 FtsX-like permease family JOA57_18015 PF12704 MacB-like periplasmic core domain JOA57_18015 PF02687 FtsX-like permease family JOA57_18015 PF00005 ABC transporter JOA57_18025 PF00158 Sigma-54 interaction domain JOA57_18025 PF02954 Bacterial regulatory protein, Fis family JOA57_18025 PF00072 Response regulator receiver domain JOA57_18030 PF00512 His Kinase A (phospho-acceptor) domain JOA57_18030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_18045 PF00132 Bacterial transferase hexapeptide (six repeats) JOA57_18045 PF12804 MobA-like NTP transferase domain JOA57_18045 PF14602 Hexapeptide repeat of succinyl-transferase JOA57_18060 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JOA57_18060 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JOA57_18065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JOA57_18065 PF02874 ATP synthase alpha/beta family, beta-barrel domain JOA57_18070 PF00231 ATP synthase JOA57_18075 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JOA57_18075 PF00306 ATP synthase alpha/beta chain, C terminal domain JOA57_18075 PF02874 ATP synthase alpha/beta family, beta-barrel domain JOA57_18080 PF00213 ATP synthase delta (OSCP) subunit JOA57_18085 PF00430 ATP synthase B/B' CF(0) JOA57_18090 PF00137 ATP synthase subunit C JOA57_18095 PF00119 ATP synthase A chain JOA57_18110 PF01979 Amidohydrolase family JOA57_18115 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOA57_18115 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JOA57_18125 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JOA57_18125 PF02817 e3 binding domain JOA57_18125 PF00364 Biotin-requiring enzyme JOA57_18160 PF03180 NLPA lipoprotein JOA57_18165 PF00528 Binding-protein-dependent transport system inner membrane component JOA57_18170 PF00005 ABC transporter JOA57_18170 PF09383 NIL domain JOA57_18175 PF00892 EamA-like transporter family JOA57_18180 PF04461 Protein of unknown function (DUF520) JOA57_18210 PF00849 RNA pseudouridylate synthase JOA57_18210 PF01479 S4 domain JOA57_18215 PF05175 Methyltransferase small domain JOA57_18215 PF08468 Methyltransferase small domain N-terminal JOA57_18225 PF07995 Glucose / Sorbosone dehydrogenase JOA57_18235 PF00672 HAMP domain JOA57_18235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_18235 PF18698 Histidine kinase sensor domain JOA57_18235 PF00512 His Kinase A (phospho-acceptor) domain JOA57_18235 PF00989 PAS fold JOA57_18255 PF00842 Alanine racemase, C-terminal domain JOA57_18255 PF01168 Alanine racemase, N-terminal domain JOA57_18260 PF01266 FAD dependent oxidoreductase JOA57_18265 PF01037 Lrp/AsnC ligand binding domain JOA57_18275 PF01641 SelR domain JOA57_18285 PF01618 MotA/TolQ/ExbB proton channel family JOA57_18290 PF13677 Membrane MotB of proton-channel complex MotA/MotB JOA57_18290 PF00691 OmpA family JOA57_18315 PF01061 ABC-2 type transporter JOA57_18320 PF00005 ABC transporter JOA57_18325 PF00999 Sodium/hydrogen exchanger family JOA57_18330 PF03795 YCII-related domain JOA57_18335 PF02469 Fasciclin domain JOA57_18340 PF03167 Uracil DNA glycosylase superfamily JOA57_18350 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JOA57_18355 PF03466 LysR substrate binding domain JOA57_18355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_18360 PF03358 NADPH-dependent FMN reductase JOA57_18365 PF00248 Aldo/keto reductase family JOA57_18375 PF01431 Peptidase family M13 JOA57_18375 PF05649 Peptidase family M13 JOA57_18390 PF13520 Amino acid permease JOA57_18400 PF04397 LytTr DNA-binding domain JOA57_18400 PF00072 Response regulator receiver domain JOA57_18405 PF02743 Cache domain JOA57_18405 PF00672 HAMP domain JOA57_18405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_18405 PF06580 Histidine kinase JOA57_18430 PF00857 Isochorismatase family JOA57_18435 PF05974 Domain of unknown function (DUF892) JOA57_18440 PF05974 Domain of unknown function (DUF892) JOA57_18445 PF05067 Manganese containing catalase JOA57_18460 PF03705 CheR methyltransferase, all-alpha domain JOA57_18460 PF08448 PAS fold JOA57_18460 PF01739 CheR methyltransferase, SAM binding domain JOA57_18460 PF01339 CheB methylesterase JOA57_18475 PF00072 Response regulator receiver domain JOA57_18475 PF00158 Sigma-54 interaction domain JOA57_18475 PF02954 Bacterial regulatory protein, Fis family JOA57_18485 PF01654 Cytochrome bd terminal oxidase subunit I JOA57_18490 PF02322 Cytochrome bd terminal oxidase subunit II JOA57_18520 PF03275 UDP-galactopyranose mutase JOA57_18530 PF00664 ABC transporter transmembrane region JOA57_18530 PF00005 ABC transporter JOA57_18545 PF00107 Zinc-binding dehydrogenase JOA57_18545 PF13823 Alcohol dehydrogenase GroES-associated JOA57_18545 PF08240 Alcohol dehydrogenase GroES-like domain JOA57_18585 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JOA57_18585 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JOA57_18615 PF00593 TonB dependent receptor JOA57_18615 PF07715 TonB-dependent Receptor Plug Domain JOA57_18630 PF00005 ABC transporter JOA57_18640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_18640 PF03466 LysR substrate binding domain JOA57_18645 PF01042 Endoribonuclease L-PSP JOA57_18665 PF00248 Aldo/keto reductase family JOA57_18670 PF03466 LysR substrate binding domain JOA57_18670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_18690 PF00360 Phytochrome region JOA57_18690 PF00563 EAL domain JOA57_18690 PF01590 GAF domain JOA57_18690 PF00990 Diguanylate cyclase, GGDEF domain JOA57_18715 PF03979 Sigma-70 factor, region 1.1 JOA57_18715 PF00140 Sigma-70 factor, region 1.2 JOA57_18715 PF04539 Sigma-70 region 3 JOA57_18715 PF04542 Sigma-70 region 2 JOA57_18715 PF04546 Sigma-70, non-essential region JOA57_18715 PF04545 Sigma-70, region 4 JOA57_18720 PF02580 D-Tyr-tRNA(Tyr) deacylase JOA57_18725 PF03279 Bacterial lipid A biosynthesis acyltransferase JOA57_18735 PF00925 GTP cyclohydrolase II JOA57_18755 PF00535 Glycosyl transferase family 2 JOA57_18770 PF01189 16S rRNA methyltransferase RsmB/F JOA57_18770 PF01029 NusB family JOA57_18775 PF02911 Formyl transferase, C-terminal domain JOA57_18775 PF00551 Formyl transferase JOA57_18780 PF01327 Polypeptide deformylase JOA57_18785 PF01476 LysM domain JOA57_18790 PF17782 DprA winged helix domain JOA57_18790 PF02481 DNA recombination-mediator protein A JOA57_18795 PF04361 Protein of unknown function (DUF494) JOA57_18800 PF07963 Prokaryotic N-terminal methylation motif JOA57_18800 PF00114 Pilin (bacterial filament) JOA57_18810 PF01131 DNA topoisomerase JOA57_18810 PF13368 Topoisomerase C-terminal repeat JOA57_18810 PF01751 Toprim domain JOA57_18815 PF01300 Telomere recombination JOA57_18830 PF00990 Diguanylate cyclase, GGDEF domain JOA57_18830 PF00360 Phytochrome region JOA57_18830 PF01590 GAF domain JOA57_18830 PF00563 EAL domain JOA57_18845 PF01343 Peptidase family S49 JOA57_18850 PF01554 MatE JOA57_18865 PF00270 DEAD/DEAH box helicase JOA57_18865 PF17764 3′ DNA-binding domain (3′BD) JOA57_18865 PF18074 Primosomal protein N C-terminal domain JOA57_18865 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JOA57_18865 PF00271 Helicase conserved C-terminal domain JOA57_18870 PF00043 Glutathione S-transferase, C-terminal domain JOA57_18870 PF13417 Glutathione S-transferase, N-terminal domain JOA57_18885 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOA57_18890 PF03458 UPF0126 domain JOA57_18895 PF04542 Sigma-70 region 2 JOA57_18895 PF04545 Sigma-70, region 4 JOA57_18900 PF03167 Uracil DNA glycosylase superfamily JOA57_18905 PF00072 Response regulator receiver domain JOA57_18905 PF01339 CheB methylesterase JOA57_18910 PF18075 FtsX extracellular domain JOA57_18915 PF00005 ABC transporter JOA57_18920 PF12300 ATP-dependent RNA helicase RhlB JOA57_18920 PF00270 DEAD/DEAH box helicase JOA57_18920 PF00271 Helicase conserved C-terminal domain JOA57_18925 PF00085 Thioredoxin JOA57_18930 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JOA57_18930 PF07497 Rho termination factor, RNA-binding domain JOA57_18930 PF07498 Rho termination factor, N-terminal domain JOA57_18940 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) JOA57_18945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_18945 PF03466 LysR substrate binding domain JOA57_18955 PF03971 Monomeric isocitrate dehydrogenase JOA57_18965 PF00756 Putative esterase JOA57_18965 PF01476 LysM domain JOA57_18970 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JOA57_18970 PF14489 QueF-like protein JOA57_18975 PF01546 Peptidase family M20/M25/M40 JOA57_18975 PF07687 Peptidase dimerisation domain JOA57_18980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOA57_18985 PF00873 AcrB/AcrD/AcrF family JOA57_18990 PF00873 AcrB/AcrD/AcrF family JOA57_19015 PF04542 Sigma-70 region 2 JOA57_19015 PF08281 Sigma-70, region 4 JOA57_19020 PF07063 Domain of unknown function (DUF1338) JOA57_19055 PF01609 Transposase DDE domain JOA57_19055 PF05598 Transposase domain (DUF772) JOA57_19065 PF01427 D-ala-D-ala dipeptidase JOA57_19095 PF01510 N-acetylmuramoyl-L-alanine amidase JOA57_19105 PF13378 Enolase C-terminal domain-like JOA57_19105 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JOA57_19115 PF13520 Amino acid permease JOA57_19130 PF05360 yiaA/B two helix domain JOA57_19135 PF07995 Glucose / Sorbosone dehydrogenase JOA57_19140 PF01915 Glycosyl hydrolase family 3 C-terminal domain JOA57_19140 PF00933 Glycosyl hydrolase family 3 N terminal domain JOA57_19140 PF14310 Fibronectin type III-like domain JOA57_19145 PF02152 Dihydroneopterin aldolase JOA57_19150 PF00814 Glycoprotease family JOA57_19155 PF01165 Ribosomal protein S21 JOA57_19160 PF09424 Yqey-like protein JOA57_19165 PF03631 Virulence factor BrkB JOA57_19170 PF01807 CHC2 zinc finger JOA57_19170 PF10410 DnaB-helicase binding domain of primase JOA57_19170 PF08278 DNA primase DnaG DnaB-binding JOA57_19170 PF08275 DNA primase catalytic core, N-terminal domain JOA57_19180 PF13593 SBF-like CPA transporter family (DUF4137) JOA57_19185 PF11412 Disulphide bond corrector protein DsbC JOA57_19185 PF02683 Cytochrome C biogenesis protein transmembrane region JOA57_19190 PF01040 UbiA prenyltransferase family JOA57_19215 PF00510 Cytochrome c oxidase subunit III JOA57_19220 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 JOA57_19230 PF00115 Cytochrome C and Quinol oxidase polypeptide I JOA57_19235 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JOA57_19235 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JOA57_19245 PF01619 Proline dehydrogenase JOA57_19245 PF14850 DNA-binding domain of Proline dehydrogenase JOA57_19245 PF00171 Aldehyde dehydrogenase family JOA57_19245 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JOA57_19275 PF00579 tRNA synthetases class I (W and Y) JOA57_19280 PF01551 Peptidase family M23 JOA57_19280 PF04225 Opacity-associated protein A LysM-like domain JOA57_19285 PF03702 Anhydro-N-acetylmuramic acid kinase JOA57_19295 PF07690 Major Facilitator Superfamily JOA57_19300 PF03372 Endonuclease/Exonuclease/phosphatase family JOA57_19305 PF00156 Phosphoribosyl transferase domain JOA57_19320 PF13614 AAA domain JOA57_19325 PF17762 HTH domain found in ParB protein JOA57_19325 PF02195 ParB-like nuclease domain JOA57_19340 PF01370 NAD dependent epimerase/dehydratase family JOA57_19345 PF00535 Glycosyl transferase family 2 JOA57_19360 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JOA57_19360 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JOA57_19360 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JOA57_19360 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JOA57_19365 PF00692 dUTPase JOA57_19370 PF04127 DNA / pantothenate metabolism flavoprotein JOA57_19370 PF02441 Flavoprotein JOA57_19375 PF04002 RadC-like JAB domain JOA57_19380 PF03485 Arginyl tRNA synthetase N terminal domain JOA57_19380 PF05746 DALR anticodon binding domain JOA57_19380 PF00750 tRNA synthetases class I (R) JOA57_19395 PF00106 short chain dehydrogenase JOA57_19400 PF01757 Acyltransferase family JOA57_19405 PF03033 Glycosyltransferase family 28 N-terminal domain JOA57_19415 PF17944 Arginine decarboxylase C-terminal helical extension JOA57_19415 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JOA57_19415 PF17810 Arginine decarboxylase helical bundle domain JOA57_19420 PF17284 Spermidine synthase tetramerisation domain JOA57_19435 PF00543 Nitrogen regulatory protein P-II JOA57_19440 PF04380 Membrane fusogenic activity JOA57_19445 PF01078 Magnesium chelatase, subunit ChlI JOA57_19445 PF13335 Magnesium chelatase, subunit ChlI C-terminal JOA57_19460 PF12792 CSS motif domain associated with EAL JOA57_19460 PF00563 EAL domain JOA57_19470 PF00487 Fatty acid desaturase JOA57_19475 PF00175 Oxidoreductase NAD-binding domain JOA57_19475 PF00111 2Fe-2S iron-sulfur cluster binding domain JOA57_19475 PF00970 Oxidoreductase FAD-binding domain JOA57_19480 PF00440 Bacterial regulatory proteins, tetR family JOA57_19545 PF01370 NAD dependent epimerase/dehydratase family JOA57_19545 PF08338 Domain of unknown function (DUF1731) JOA57_19550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JOA57_19550 PF07992 Pyridine nucleotide-disulphide oxidoreductase JOA57_19560 PF00486 Transcriptional regulatory protein, C terminal JOA57_19560 PF00072 Response regulator receiver domain JOA57_19565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_19565 PF00512 His Kinase A (phospho-acceptor) domain JOA57_19565 PF08521 Two-component sensor kinase N-terminal JOA57_19585 PF00595 PDZ domain JOA57_19605 PF01594 AI-2E family transporter JOA57_19610 PF13419 Haloacid dehalogenase-like hydrolase JOA57_19615 PF02789 Cytosol aminopeptidase family, N-terminal domain JOA57_19615 PF00883 Cytosol aminopeptidase family, catalytic domain JOA57_19635 PF00196 Bacterial regulatory proteins, luxR family JOA57_19635 PF00072 Response regulator receiver domain JOA57_19640 PF07730 Histidine kinase JOA57_19645 PF13533 Biotin-lipoyl like JOA57_19655 PF00005 ABC transporter JOA57_19680 PF00892 EamA-like transporter family JOA57_19720 PF00753 Metallo-beta-lactamase superfamily JOA57_19725 PF00579 tRNA synthetases class I (W and Y) JOA57_19730 PF05532 CsbD-like JOA57_19745 PF00491 Arginase family JOA57_19770 PF02223 Thymidylate kinase JOA57_19775 PF02311 AraC-like ligand binding domain JOA57_19775 PF12833 Helix-turn-helix domain JOA57_19800 PF03309 Type III pantothenate kinase JOA57_19805 PF02237 Biotin protein ligase C terminal domain JOA57_19805 PF08279 HTH domain JOA57_19805 PF03099 Biotin/lipoate A/B protein ligase family JOA57_19815 PF06167 Glucose-regulated metallo-peptidase M90 JOA57_19830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_19835 PF00072 Response regulator receiver domain JOA57_19835 PF00486 Transcriptional regulatory protein, C terminal JOA57_19845 PF01207 Dihydrouridine synthase (Dus) JOA57_19870 PF00199 Catalase JOA57_19870 PF06628 Catalase-related immune-responsive JOA57_19875 PF06733 DEAD_2 JOA57_19875 PF13307 Helicase C-terminal domain JOA57_19890 PF08501 Shikimate dehydrogenase substrate binding domain JOA57_19890 PF01488 Shikimate / quinate 5-dehydrogenase JOA57_19890 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JOA57_19905 PF00667 FAD binding domain JOA57_19905 PF00175 Oxidoreductase NAD-binding domain JOA57_19905 PF00258 Flavodoxin JOA57_19910 PF00490 Delta-aminolevulinic acid dehydratase JOA57_19935 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region JOA57_19935 PF00326 Prolyl oligopeptidase family JOA57_19940 PF00043 Glutathione S-transferase, C-terminal domain JOA57_19940 PF02798 Glutathione S-transferase, N-terminal domain JOA57_19960 PF04820 Tryptophan halogenase JOA57_19975 PF00005 ABC transporter JOA57_19985 PF01381 Helix-turn-helix JOA57_19995 PF02583 Metal-sensitive transcriptional repressor JOA57_20000 PF01545 Cation efflux family JOA57_20010 PF01229 Glycosyl hydrolases family 39 JOA57_20015 PF01383 CpcD/allophycocyanin linker domain JOA57_20015 PF00175 Oxidoreductase NAD-binding domain JOA57_20020 PF00005 ABC transporter JOA57_20025 PF01061 ABC-2 type transporter JOA57_20035 PF08546 Ketopantoate reductase PanE/ApbA C terminal JOA57_20035 PF02558 Ketopantoate reductase PanE/ApbA JOA57_20050 PF03061 Thioesterase superfamily JOA57_20065 PF00268 Ribonucleotide reductase, small chain JOA57_20070 PF03477 ATP cone domain JOA57_20070 PF02867 Ribonucleotide reductase, barrel domain JOA57_20070 PF00317 Ribonucleotide reductase, all-alpha domain JOA57_20080 PF00583 Acetyltransferase (GNAT) family JOA57_20080 PF13380 CoA binding domain JOA57_20080 PF13607 Succinyl-CoA ligase like flavodoxin domain JOA57_20085 PF00571 CBS domain JOA57_20085 PF01769 Divalent cation transporter JOA57_20085 PF03448 MgtE intracellular N domain JOA57_20090 PF00194 Eukaryotic-type carbonic anhydrase JOA57_20095 PF00999 Sodium/hydrogen exchanger family JOA57_20095 PF02254 TrkA-N domain JOA57_20100 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JOA57_20100 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JOA57_20105 PF00723 Glycosyl hydrolases family 15 JOA57_20110 PF01451 Low molecular weight phosphotyrosine protein phosphatase JOA57_20120 PF05166 YcgL domain JOA57_20125 PF00109 Beta-ketoacyl synthase, N-terminal domain JOA57_20125 PF02801 Beta-ketoacyl synthase, C-terminal domain JOA57_20135 PF00535 Glycosyl transferase family 2 JOA57_20140 PF04820 Tryptophan halogenase JOA57_20185 PF07977 FabA-like domain JOA57_20200 PF00550 Phosphopantetheine attachment site JOA57_20205 PF04820 Tryptophan halogenase JOA57_20235 PF01218 Coproporphyrinogen III oxidase JOA57_20240 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JOA57_20240 PF01612 3'-5' exonuclease JOA57_20240 PF01367 5'-3' exonuclease, C-terminal SAM fold JOA57_20240 PF00476 DNA polymerase family A JOA57_20250 PF06812 ImpA, N-terminal, type VI secretion system JOA57_20260 PF14602 Hexapeptide repeat of succinyl-transferase JOA57_20260 PF12464 Maltose acetyltransferase JOA57_20270 PF00580 UvrD/REP helicase N-terminal domain JOA57_20270 PF13361 UvrD-like helicase C-terminal domain JOA57_20280 PF13091 PLD-like domain JOA57_20280 PF13396 Phospholipase_D-nuclease N-terminal JOA57_20285 PF03466 LysR substrate binding domain JOA57_20285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_20290 PF03737 Aldolase/RraA JOA57_20295 PF04303 PrpF protein JOA57_20300 PF04909 Amidohydrolase JOA57_20305 PF00471 Ribosomal protein L33 JOA57_20310 PF00830 Ribosomal L28 family JOA57_20320 PF00873 AcrB/AcrD/AcrF family JOA57_20325 PF00529 HlyD membrane-fusion protein of T1SS JOA57_20325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOA57_20345 PF02527 rRNA small subunit methyltransferase G JOA57_20350 PF16655 PhoD-like phosphatase, N-terminal domain JOA57_20350 PF09423 PhoD-like phosphatase JOA57_20355 PF01648 4'-phosphopantetheinyl transferase superfamily JOA57_20360 PF04226 Transglycosylase associated protein JOA57_20405 PF00480 ROK family JOA57_20415 PF00639 PPIC-type PPIASE domain JOA57_20415 PF09312 SurA N-terminal domain JOA57_20430 PF00474 Sodium:solute symporter family JOA57_20435 PF04341 Protein of unknown function, DUF485 JOA57_20445 PF16177 Acetyl-coenzyme A synthetase N-terminus JOA57_20445 PF00501 AMP-binding enzyme JOA57_20445 PF13193 AMP-binding enzyme C-terminal domain JOA57_20450 PF00196 Bacterial regulatory proteins, luxR family JOA57_20450 PF00072 Response regulator receiver domain JOA57_20470 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain JOA57_20470 PF04616 Glycosyl hydrolases family 43 JOA57_20475 PF00248 Aldo/keto reductase family JOA57_20490 PF01557 Fumarylacetoacetate (FAA) hydrolase family JOA57_20495 PF13378 Enolase C-terminal domain-like JOA57_20495 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JOA57_20500 PF05336 L-rhamnose mutarotase JOA57_20505 PF07690 Major Facilitator Superfamily JOA57_20510 PF09339 IclR helix-turn-helix domain JOA57_20510 PF01614 Bacterial transcriptional regulator JOA57_20525 PF02659 Putative manganese efflux pump JOA57_20530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_20530 PF00512 His Kinase A (phospho-acceptor) domain JOA57_20530 PF00072 Response regulator receiver domain JOA57_20530 PF09456 RcsC Alpha-Beta-Loop (ABL) JOA57_20535 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain JOA57_20535 PF06165 Glycosyltransferase family 36 JOA57_20550 PF01011 PQQ enzyme repeat JOA57_20550 PF13570 PQQ-like domain JOA57_20550 PF13360 PQQ-like domain JOA57_20570 PF04357 TamB, inner membrane protein subunit of TAM complex JOA57_20575 PF01103 Surface antigen JOA57_20575 PF17243 POTRA domain TamA domain 1 JOA57_20580 PF05746 DALR anticodon binding domain JOA57_20580 PF02092 Glycyl-tRNA synthetase beta subunit JOA57_20585 PF02091 Glycyl-tRNA synthetase alpha subunit JOA57_20590 PF00437 Type II/IV secretion system protein JOA57_20590 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JOA57_20595 PF00117 Glutamine amidotransferase class-I JOA57_20595 PF00958 GMP synthase C terminal domain JOA57_20605 PF00902 Sec-independent protein translocase protein (TatC) JOA57_20610 PF02416 mttA/Hcf106 family JOA57_20615 PF02416 mttA/Hcf106 family JOA57_20625 PF00762 Ferrochelatase JOA57_20630 PF12697 Alpha/beta hydrolase family JOA57_20640 PF04381 Putative exonuclease, RdgC JOA57_20645 PF01171 PP-loop family JOA57_20655 PF00356 Bacterial regulatory proteins, lacI family JOA57_20660 PF07477 Glycosyl hydrolase family 67 C-terminus JOA57_20660 PF07488 Glycosyl hydrolase family 67 middle domain JOA57_20660 PF03648 Glycosyl hydrolase family 67 N-terminus JOA57_20670 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JOA57_20670 PF13378 Enolase C-terminal domain-like JOA57_20675 PF04616 Glycosyl hydrolases family 43 JOA57_20675 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain JOA57_20680 PF07691 PA14 domain JOA57_20680 PF14310 Fibronectin type III-like domain JOA57_20680 PF00933 Glycosyl hydrolase family 3 N terminal domain JOA57_20680 PF01915 Glycosyl hydrolase family 3 C-terminal domain JOA57_20685 PF08125 Mannitol dehydrogenase C-terminal domain JOA57_20685 PF01232 Mannitol dehydrogenase Rossmann domain JOA57_20725 PF08450 SMP-30/Gluconolactonase/LRE-like region JOA57_20735 PF00331 Glycosyl hydrolase family 10 JOA57_20740 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 JOA57_20740 PF02837 Glycosyl hydrolases family 2, sugar binding domain JOA57_20740 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JOA57_20740 PF16355 Domain of unknown function (DUF4982) JOA57_20740 PF00703 Glycosyl hydrolases family 2 JOA57_20745 PF02614 Glucuronate isomerase JOA57_20750 PF00331 Glycosyl hydrolase family 10 JOA57_20750 PF03422 Carbohydrate binding module (family 6) JOA57_20750 PF00553 Cellulose binding domain JOA57_20770 PF04616 Glycosyl hydrolases family 43 JOA57_20795 PF08240 Alcohol dehydrogenase GroES-like domain JOA57_20795 PF00107 Zinc-binding dehydrogenase JOA57_20795 PF16197 Ketoacyl-synthetase C-terminal extension JOA57_20795 PF00698 Acyl transferase domain JOA57_20795 PF00109 Beta-ketoacyl synthase, N-terminal domain JOA57_20795 PF02801 Beta-ketoacyl synthase, C-terminal domain JOA57_20795 PF08659 KR domain JOA57_20795 PF00550 Phosphopantetheine attachment site JOA57_20795 PF14765 Polyketide synthase dehydratase JOA57_20800 PF01553 Acyltransferase JOA57_20810 PF00356 Bacterial regulatory proteins, lacI family JOA57_20825 PF04820 Tryptophan halogenase JOA57_20830 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JOA57_20835 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) JOA57_20840 PF04337 Protein of unknown function, DUF480 JOA57_20850 PF13302 Acetyltransferase (GNAT) domain JOA57_20855 PF00580 UvrD/REP helicase N-terminal domain JOA57_20855 PF13361 UvrD-like helicase C-terminal domain JOA57_20875 PF00265 Thymidine kinase JOA57_20880 PF01590 GAF domain JOA57_20880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JOA57_20880 PF00512 His Kinase A (phospho-acceptor) domain JOA57_20880 PF08446 PAS fold JOA57_20880 PF00360 Phytochrome region JOA57_20885 PF04349 Periplasmic glucan biosynthesis protein, MdoG JOA57_20900 PF06827 Zinc finger found in FPG and IleRS JOA57_20900 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JOA57_20900 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JOA57_20935 PF03594 Benzoate membrane transport protein JOA57_20945 PF01590 GAF domain JOA57_20945 PF13426 PAS domain JOA57_20945 PF00360 Phytochrome region JOA57_20945 PF08446 PAS fold JOA57_20950 PF01126 Heme oxygenase JOA57_20955 PF07690 Major Facilitator Superfamily JOA57_20960 PF01263 Aldose 1-epimerase JOA57_20970 PF02810 SEC-C motif JOA57_20980 PF01925 Sulfite exporter TauE/SafE JOA57_20985 PF07715 TonB-dependent Receptor Plug Domain JOA57_20985 PF00593 TonB dependent receptor JOA57_21010 PF01227 GTP cyclohydrolase I JOA57_21020 PF07869 Protein of unknown function (DUF1656) JOA57_21025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JOA57_21025 PF00529 HlyD membrane-fusion protein of T1SS JOA57_21030 PF02321 Outer membrane efflux protein JOA57_21035 PF04632 Fusaric acid resistance protein family JOA57_21040 PF00083 Sugar (and other) transporter JOA57_21050 PF03466 LysR substrate binding domain JOA57_21050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_21055 PF00106 short chain dehydrogenase JOA57_21060 PF13091 PLD-like domain JOA57_21060 PF13396 Phospholipase_D-nuclease N-terminal JOA57_21135 PF00849 RNA pseudouridylate synthase JOA57_21165 PF05016 ParE toxin of type II toxin-antitoxin system, parDE JOA57_21175 PF13538 UvrD-like helicase C-terminal domain JOA57_21180 PF13361 UvrD-like helicase C-terminal domain JOA57_21180 PF00580 UvrD/REP helicase N-terminal domain JOA57_21180 PF12705 PD-(D/E)XK nuclease superfamily JOA57_21185 PF17946 RecC C-terminal domain JOA57_21220 PF00005 ABC transporter JOA57_21225 PF02405 Permease MlaE JOA57_21230 PF02470 MlaD protein JOA57_21235 PF05494 MlaC protein JOA57_21245 PF04333 MlaA lipoprotein JOA57_21255 PF00255 Glutathione peroxidase JOA57_21265 PF02646 RmuC family JOA57_21275 PF08240 Alcohol dehydrogenase GroES-like domain JOA57_21275 PF00107 Zinc-binding dehydrogenase JOA57_21280 PF03466 LysR substrate binding domain JOA57_21280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JOA57_21295 PF13520 Amino acid permease JOA57_21305 PF07715 TonB-dependent Receptor Plug Domain JOA57_21305 PF00593 TonB dependent receptor JOA57_21310 PF10947 Protein of unknown function (DUF2628) JOA57_21315 PF00990 Diguanylate cyclase, GGDEF domain JOA57_21320 PF05651 Putative sugar diacid recognition JOA57_21320 PF17853 GGDEF-like domain JOA57_21320 PF13556 PucR C-terminal helix-turn-helix domain JOA57_21325 PF02595 Glycerate kinase family JOA57_21330 PF07690 Major Facilitator Superfamily JOA57_21355 PF17785 PUA-like domain JOA57_21355 PF10672 S-adenosylmethionine-dependent methyltransferase JOA57_21360 PF03741 Integral membrane protein TerC family JOA57_21365 PF01694 Rhomboid family JOA57_21370 PF03009 Glycerophosphoryl diester phosphodiesterase family JOA57_21380 PF01569 PAP2 superfamily JOA57_21385 PF00593 TonB dependent receptor JOA57_21390 PF01926 50S ribosome-binding GTPase JOA57_21390 PF12631 MnmE helical domain JOA57_21390 PF10396 GTP-binding protein TrmE N-terminus JOA57_21395 PF01522 Polysaccharide deacetylase JOA57_21400 PF02096 60Kd inner membrane protein JOA57_21400 PF14849 YidC periplasmic domain JOA57_21405 PF00825 Ribonuclease P JOA57_21410 PF00468 Ribosomal protein L34