AEA00_00010 SM00382 ATPases associated with a variety of cellular activities AEA00_00010 SM00760 Bacterial dnaA protein helix-turn-helix domain AEA00_00015 SM00480 DNA polymerase III beta subunit AEA00_00025 SM00387 Histidine kinase-like ATPases AEA00_00025 SM00433 TopoisomeraseII AEA00_00040 SM00028 Tetratricopeptide repeats AEA00_00075 SM00155 Phospholipase D. Active site motifs. AEA00_00080 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA00_00115 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AEA00_00115 SM00245 tail specific protease AEA00_00155 SM00829 Enoylreductase AEA00_00275 SM00487 DEAD-like helicases superfamily AEA00_00275 SM00490 helicase superfamily c-terminal domain AEA00_00370 SM00421 helix_turn_helix, Lux Regulon AEA00_00545 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AEA00_00570 SM00421 helix_turn_helix, Lux Regulon AEA00_00570 SM00448 cheY-homologous receiver domain AEA00_00595 SM00862 Transcriptional regulatory protein, C terminal AEA00_00655 SM00642 Alpha-amylase domain AEA00_00660 SM00642 Alpha-amylase domain AEA00_00665 SM00642 Alpha-amylase domain AEA00_00745 SM00354 helix_turn _helix lactose operon repressor AEA00_00780 SM00344 helix_turn_helix ASNC type AEA00_00800 SM00382 ATPases associated with a variety of cellular activities AEA00_00815 SM00382 ATPases associated with a variety of cellular activities AEA00_00870 SM00855 Phosphoglycerate mutase family AEA00_00875 SM00867 YceI-like domain AEA00_00880 SM00155 Phospholipase D. Active site motifs. AEA00_00890 SM00563 Phosphate acyltransferases AEA00_00900 SM00028 Tetratricopeptide repeats AEA00_00920 SM01230 AEA00_00920 AEA00_00925 SM00938 Nitrogen regulatory protein P-II AEA00_00935 SM00387 Histidine kinase-like ATPases AEA00_00935 SM00388 His Kinase A (phosphoacceptor) domain AEA00_00940 SM00382 ATPases associated with a variety of cellular activities AEA00_00940 SM00448 cheY-homologous receiver domain AEA00_01010 SM00450 Rhodanese Homology Domain AEA00_01145 SM00563 Phosphate acyltransferases AEA00_01180 SM00342 helix_turn_helix, arabinose operon control protein AEA00_01200 SM00100 Cyclic nucleotide-monophosphate binding domain AEA00_01200 SM00267 diguanylate cyclase AEA00_01225 SM00878 Biotin carboxylase C-terminal domain AEA00_01255 SM00953 AEA00_01255 AEA00_01295 SM00833 Cobalamin synthesis protein cobW C-terminal domain AEA00_01325 SM00347 helix_turn_helix multiple antibiotic resistance protein AEA00_01360 SM00829 Enoylreductase AEA00_01385 SM00487 DEAD-like helicases superfamily AEA00_01385 SM00490 helicase superfamily c-terminal domain AEA00_01385 SM00847 Helicase associated domain (HA2) Add an annotation AEA00_01390 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_01390 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_01460 SM00155 Phospholipase D. Active site motifs. AEA00_01565 SM00342 helix_turn_helix, arabinose operon control protein AEA00_01630 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_01765 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AEA00_01770 SM00347 helix_turn_helix multiple antibiotic resistance protein AEA00_01790 SM00342 helix_turn_helix, arabinose operon control protein AEA00_01820 SM00420 helix_turn_helix, Deoxyribose operon repressor AEA00_01820 SM01134 AEA00_01820 AEA00_01835 SM00882 Coenzyme A transferase AEA00_01840 SM00882 Coenzyme A transferase AEA00_01860 SM00998 Adenylosuccinate lyase C-terminus AEA00_01880 SM00346 helix_turn_helix isocitrate lyase regulation AEA00_01885 SM00090 RIO-like kinase AEA00_01900 SM01228 AEA00_01900 AEA00_01955 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA00_01955 SM00876 Biotin and Thiamin Synthesis associated domain AEA00_02065 SM00267 diguanylate cyclase AEA00_02075 SM00642 Alpha-amylase domain AEA00_02080 SM00642 Alpha-amylase domain AEA00_02090 SM00642 Alpha-amylase domain AEA00_02100 SM00642 Alpha-amylase domain AEA00_02165 SM00326 Src homology 3 domains AEA00_02170 SM00861 Transketolase, pyrimidine binding domain AEA00_02200 SM00347 helix_turn_helix multiple antibiotic resistance protein AEA00_02300 SM00271 DnaJ molecular chaperone homology domain AEA00_02320 SM00046 Diacylglycerol kinase catalytic domain (presumed) AEA00_02350 SM00903 Flavin reductase like domain AEA00_02370 SM00100 Cyclic nucleotide-monophosphate binding domain AEA00_02370 SM00419 helix_turn_helix, cAMP Regulatory protein AEA00_02425 SM00073 Histidine Phosphotransfer domain AEA00_02425 SM00387 Histidine kinase-like ATPases AEA00_02425 SM00388 His Kinase A (phosphoacceptor) domain AEA00_02425 SM00448 cheY-homologous receiver domain AEA00_02430 SM00052 Putative diguanylate phosphodiesterase AEA00_02430 SM00267 diguanylate cyclase AEA00_02430 SM00448 cheY-homologous receiver domain AEA00_02475 SM00563 Phosphate acyltransferases AEA00_02495 SM01209 AEA00_02495 AEA00_02495 SM01210 AEA00_02495 AEA00_02500 SM00798 AICARFT/IMPCHase bienzyme AEA00_02500 SM00851 MGS-like domain AEA00_02515 SM00195 Dual specificity phosphatase, catalytic domain AEA00_02535 SM00563 Phosphate acyltransferases AEA00_02560 SM00530 Helix-turn-helix XRE-family like proteins AEA00_02585 SM00878 Biotin carboxylase C-terminal domain AEA00_02620 SM00883 Chaperonin 10 Kd subunit AEA00_02630 SM00487 DEAD-like helicases superfamily AEA00_02630 SM00490 helicase superfamily c-terminal domain AEA00_02780 SM00867 YceI-like domain AEA00_02825 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AEA00_02835 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEA00_02835 SM00895 AEA00_02835 AEA00_02855 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_02855 SM00331 Sigma factor PP2C-like phosphatases AEA00_02995 SM00267 diguanylate cyclase AEA00_03045 SM00062 Bacterial periplasmic substrate-binding proteins AEA00_03095 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AEA00_03095 SM01232 AEA00_03095 AEA00_03105 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA00_03115 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA00_03115 SM00091 PAS domain AEA00_03115 SM00267 diguanylate cyclase AEA00_03120 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_03120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_03120 SM01049 AEA00_03120 AEA00_03125 SM00637 AEA00_03125 AEA00_03135 SM00267 diguanylate cyclase AEA00_03170 SM00448 cheY-homologous receiver domain AEA00_03170 SM00850 LytTr DNA-binding domain AEA00_03265 SM00382 ATPases associated with a variety of cellular activities AEA00_03265 SM01086 C-terminal, D2-small domain, of ClpB protein AEA00_03300 SM00267 diguanylate cyclase AEA00_03305 SM01263 AEA00_03305 AEA00_03320 SM00564 beta-propeller repeat AEA00_03340 SM00062 Bacterial periplasmic substrate-binding proteins AEA00_03340 SM00248 ankyrin repeats AEA00_03355 SM00829 Enoylreductase AEA00_03370 SM00382 ATPases associated with a variety of cellular activities AEA00_03380 SM00268 Actin AEA00_03450 SM00710 Parallel beta-helix repeats AEA00_03465 SM00936 Penicillin-binding protein 5, C-terminal domain AEA00_03490 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA00_03495 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AEA00_03495 SM00245 tail specific protease AEA00_03550 SM01350 AEA00_03550 AEA00_03560 SM00749 bacterial OsmY and nodulation domain AEA00_03565 SM00387 Histidine kinase-like ATPases AEA00_03565 SM00388 His Kinase A (phosphoacceptor) domain AEA00_03570 SM00448 cheY-homologous receiver domain AEA00_03575 SM00387 Histidine kinase-like ATPases AEA00_03575 SM00388 His Kinase A (phosphoacceptor) domain AEA00_03575 SM00448 cheY-homologous receiver domain AEA00_03600 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AEA00_03625 SM00382 ATPases associated with a variety of cellular activities AEA00_03675 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEA00_03675 SM00866 AEA00_03675 AEA00_03685 SM00354 helix_turn _helix lactose operon repressor AEA00_03700 SM00245 tail specific protease AEA00_03770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_03770 SM00387 Histidine kinase-like ATPases AEA00_03770 SM00388 His Kinase A (phosphoacceptor) domain AEA00_03775 SM00448 cheY-homologous receiver domain AEA00_03775 SM00862 Transcriptional regulatory protein, C terminal AEA00_03805 SM00829 Enoylreductase AEA00_03820 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEA00_03900 SM00450 Rhodanese Homology Domain AEA00_03935 SM01154 AEA00_03935 AEA00_03945 SM00642 Alpha-amylase domain AEA00_03960 SM00354 helix_turn _helix lactose operon repressor AEA00_03965 SM00822 AEA00_03965 AEA00_03980 SM00448 cheY-homologous receiver domain AEA00_03980 SM00862 Transcriptional regulatory protein, C terminal AEA00_03985 SM00387 Histidine kinase-like ATPases AEA00_03985 SM00388 His Kinase A (phosphoacceptor) domain AEA00_04000 SM00421 helix_turn_helix, Lux Regulon AEA00_04000 SM00448 cheY-homologous receiver domain AEA00_04010 SM00387 Histidine kinase-like ATPases AEA00_04010 SM00388 His Kinase A (phosphoacceptor) domain AEA00_04010 SM00448 cheY-homologous receiver domain AEA00_04025 SM00919 Malic enzyme, NAD binding domain AEA00_04025 SM01274 AEA00_04025 AEA00_04075 SM00267 diguanylate cyclase AEA00_04100 SM01329 AEA00_04100 AEA00_04105 SM00917 LeuA allosteric (dimerisation) domain AEA00_04135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_04155 SM00862 Transcriptional regulatory protein, C terminal AEA00_04160 SM00342 helix_turn_helix, arabinose operon control protein AEA00_04290 SM00464 Found in ATP-dependent protease La (LON) AEA00_04365 SM00028 Tetratricopeptide repeats AEA00_04365 SM00421 helix_turn_helix, Lux Regulon AEA00_04430 SM01011 Aminopeptidase P, N-terminal domain AEA00_04440 SM00849 Metallo-beta-lactamase superfamily AEA00_04465 SM00382 ATPases associated with a variety of cellular activities AEA00_04470 SM00903 Flavin reductase like domain AEA00_04535 SM00861 Transketolase, pyrimidine binding domain AEA00_04550 SM00028 Tetratricopeptide repeats AEA00_04550 SM00327 von Willebrand factor (vWF) type A domain AEA00_04555 SM00327 von Willebrand factor (vWF) type A domain AEA00_04570 SM00382 ATPases associated with a variety of cellular activities AEA00_04575 SM00965 Secretin and TonB N terminus short domain AEA00_04625 SM00487 DEAD-like helicases superfamily AEA00_04625 SM00490 helicase superfamily c-terminal domain AEA00_04635 SM00858 AEA00_04635 AEA00_04645 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AEA00_04660 SM01130 AEA00_04660 AEA00_04670 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AEA00_04670 SM00954 Region found in RelA / SpoT proteins AEA00_04675 SM01409 AEA00_04675 AEA00_04680 SM00072 Guanylate kinase homologues. AEA00_04705 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA00_04745 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AEA00_04785 SM00506 Appr-1"-p processing enzyme AEA00_04815 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA00_04815 SM00387 Histidine kinase-like ATPases AEA00_04885 SM00967 RNA 2'-O ribose methyltransferase substrate binding AEA00_04915 SM00354 helix_turn _helix lactose operon repressor AEA00_04970 SM00869 Autotransporter beta-domain AEA00_05000 SM00530 Helix-turn-helix XRE-family like proteins AEA00_05080 SM00267 diguanylate cyclase AEA00_05140 SM00528 Domain in histone-like proteins of HNS family AEA00_05145 SM00642 Alpha-amylase domain AEA00_05155 SM00448 cheY-homologous receiver domain AEA00_05155 SM00862 Transcriptional regulatory protein, C terminal AEA00_05160 SM00387 Histidine kinase-like ATPases AEA00_05160 SM00388 His Kinase A (phosphoacceptor) domain AEA00_05215 SM00382 ATPases associated with a variety of cellular activities AEA00_05215 SM00448 cheY-homologous receiver domain AEA00_05220 SM00387 Histidine kinase-like ATPases AEA00_05220 SM00388 His Kinase A (phosphoacceptor) domain AEA00_05230 SM00881 CoA binding domain AEA00_05280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_05280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_05285 SM00564 beta-propeller repeat AEA00_05350 SM00382 ATPases associated with a variety of cellular activities AEA00_05350 SM01086 C-terminal, D2-small domain, of ClpB protein AEA00_05415 SM00855 Phosphoglycerate mutase family AEA00_05425 SM00342 helix_turn_helix, arabinose operon control protein AEA00_05425 SM00871 Bacterial transcription activator, effector binding domain AEA00_05495 SM00382 ATPases associated with a variety of cellular activities AEA00_05540 SM00834 Putative regulatory protein AEA00_05580 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AEA00_05590 SM00860 SMI1 / KNR4 family AEA00_05595 SM00382 ATPases associated with a variety of cellular activities AEA00_05660 SM00091 PAS domain AEA00_05660 SM00911 HWE histidine kinase AEA00_05665 SM00448 cheY-homologous receiver domain AEA00_05705 SM00363 S4 RNA-binding domain AEA00_05715 SM00448 cheY-homologous receiver domain AEA00_05725 SM00341 Helicase and RNase D C-terminal AEA00_05725 SM00487 DEAD-like helicases superfamily AEA00_05725 SM00490 helicase superfamily c-terminal domain AEA00_05725 SM00956 AEA00_05725 AEA00_05735 SM00382 ATPases associated with a variety of cellular activities AEA00_05735 SM00487 DEAD-like helicases superfamily AEA00_05735 SM00490 helicase superfamily c-terminal domain AEA00_05735 SM00847 Helicase associated domain (HA2) Add an annotation AEA00_05780 SM00954 Region found in RelA / SpoT proteins AEA00_05805 SM00491 AEA00_05805 AEA00_05830 SM00448 cheY-homologous receiver domain AEA00_05835 SM00448 cheY-homologous receiver domain AEA00_05840 SM00260 Two component signalling adaptor domain AEA00_05845 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_05850 SM00073 Histidine Phosphotransfer domain AEA00_05850 SM00260 Two component signalling adaptor domain AEA00_05850 SM00387 Histidine kinase-like ATPases AEA00_05850 SM00448 cheY-homologous receiver domain AEA00_05850 SM01231 AEA00_05850 AEA00_05880 SM00327 von Willebrand factor (vWF) type A domain AEA00_05930 SM00487 DEAD-like helicases superfamily AEA00_05940 SM01040 BRO family, N-terminal domain AEA00_05990 SM01149 AEA00_05990 AEA00_05995 SM00758 AEA00_05995 AEA00_05995 SM01217 AEA00_05995 AEA00_06010 SM00636 AEA00_06010 AEA00_06015 SM00812 Alpha-L-fucosidase AEA00_06060 SM00244 prohibitin homologues AEA00_06140 SM00116 Domain in cystathionine beta-synthase and other proteins. AEA00_06195 SM00867 YceI-like domain AEA00_06205 SM00867 YceI-like domain AEA00_06210 SM00387 Histidine kinase-like ATPases AEA00_06210 SM00388 His Kinase A (phosphoacceptor) domain AEA00_06210 SM00448 cheY-homologous receiver domain AEA00_06220 SM00387 Histidine kinase-like ATPases AEA00_06220 SM00388 His Kinase A (phosphoacceptor) domain AEA00_06220 SM00448 cheY-homologous receiver domain AEA00_06295 SM00422 helix_turn_helix, mercury resistance AEA00_06325 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AEA00_06375 SM00421 helix_turn_helix, Lux Regulon AEA00_06385 SM00656 AEA00_06385 AEA00_06410 SM00924 MgtE intracellular N domain AEA00_06455 SM00382 ATPases associated with a variety of cellular activities AEA00_06475 SM00116 Domain in cystathionine beta-synthase and other proteins. AEA00_06590 SM00671 Sel1-like repeats. AEA00_06595 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AEA00_06625 SM00382 ATPases associated with a variety of cellular activities AEA00_06640 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain AEA00_06670 SM00411 bacterial (prokaryotic) histone like domain AEA00_06685 SM00382 ATPases associated with a variety of cellular activities AEA00_06725 SM00732 Likely ribonuclease with RNase H fold. AEA00_06805 SM00267 diguanylate cyclase AEA00_06810 SM00829 Enoylreductase AEA00_06820 SM01092 CO dehydrogenase flavoprotein C-terminal domain AEA00_06825 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AEA00_06855 SM00248 ankyrin repeats AEA00_06900 SM00855 Phosphoglycerate mutase family AEA00_06920 SM00155 Phospholipase D. Active site motifs. AEA00_06925 SM00448 cheY-homologous receiver domain AEA00_06930 SM00138 Methyltransferase, chemotaxis proteins AEA00_06935 SM00052 Putative diguanylate phosphodiesterase AEA00_06935 SM00448 cheY-homologous receiver domain AEA00_06940 SM00260 Two component signalling adaptor domain AEA00_06945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_06945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_06950 SM00073 Histidine Phosphotransfer domain AEA00_06950 SM00260 Two component signalling adaptor domain AEA00_06950 SM00387 Histidine kinase-like ATPases AEA00_06950 SM01231 AEA00_06950 AEA00_06960 SM00487 DEAD-like helicases superfamily AEA00_06960 SM00490 helicase superfamily c-terminal domain AEA00_06960 SM00982 AEA00_06960 AEA00_06960 SM01058 CarD-like/TRCF domain AEA00_06975 SM00448 cheY-homologous receiver domain AEA00_06975 SM00862 Transcriptional regulatory protein, C terminal AEA00_06980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_06980 SM00387 Histidine kinase-like ATPases AEA00_06980 SM00388 His Kinase A (phosphoacceptor) domain AEA00_07070 SM00342 helix_turn_helix, arabinose operon control protein AEA00_07125 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEA00_07125 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AEA00_07150 SM00347 helix_turn_helix multiple antibiotic resistance protein AEA00_07190 SM00342 helix_turn_helix, arabinose operon control protein AEA00_07190 SM00478 endonuclease III AEA00_07190 SM01009 AlkA N-terminal domain AEA00_07240 SM00487 DEAD-like helicases superfamily AEA00_07240 SM00490 helicase superfamily c-terminal domain AEA00_07245 SM00052 Putative diguanylate phosphodiesterase AEA00_07245 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA00_07245 SM00091 PAS domain AEA00_07245 SM00267 diguanylate cyclase AEA00_07250 SM00363 S4 RNA-binding domain AEA00_07290 SM00382 ATPases associated with a variety of cellular activities AEA00_07315 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AEA00_07405 SM00316 Ribosomal protein S1-like RNA-binding domain AEA00_07455 SM00977 TilS substrate C-terminal domain AEA00_07460 SM00098 Alkaline phosphatase homologues AEA00_07495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_07495 SM00387 Histidine kinase-like ATPases AEA00_07495 SM00388 His Kinase A (phosphoacceptor) domain AEA00_07505 SM00382 ATPases associated with a variety of cellular activities AEA00_07505 SM00448 cheY-homologous receiver domain AEA00_07570 SM01160 AEA00_07570 AEA00_07630 SM00369 Leucine-rich repeats, typical (most populated) subfamily AEA00_07635 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA00_07665 SM00257 Lysin motif AEA00_07705 SM00859 Semialdehyde dehydrogenase, NAD binding domain AEA00_07770 SM00052 Putative diguanylate phosphodiesterase AEA00_07770 SM00267 diguanylate cyclase AEA00_07770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_07790 SM00822 AEA00_07790 AEA00_07835 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AEA00_07840 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AEA00_07890 SM00316 Ribosomal protein S1-like RNA-binding domain AEA00_07890 SM00322 K homology RNA-binding domain AEA00_07910 SM01387 AEA00_07910 AEA00_07915 SM00316 Ribosomal protein S1-like RNA-binding domain AEA00_07915 SM00322 K homology RNA-binding domain AEA00_07935 SM01001 AIR carboxylase AEA00_08010 SM00487 DEAD-like helicases superfamily AEA00_08010 SM00490 helicase superfamily c-terminal domain AEA00_08070 SM00382 ATPases associated with a variety of cellular activities AEA00_08085 SM00642 Alpha-amylase domain AEA00_08120 SM00642 Alpha-amylase domain AEA00_08125 SM00354 helix_turn _helix lactose operon repressor AEA00_08130 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AEA00_08155 SM00873 B3/4 domain AEA00_08155 SM00874 tRNA synthetase B5 domain AEA00_08155 SM00896 Ferredoxin-fold anticodon binding domain AEA00_08160 SM00411 bacterial (prokaryotic) histone like domain AEA00_08165 SM00422 helix_turn_helix, mercury resistance AEA00_08250 SM00849 Metallo-beta-lactamase superfamily AEA00_08275 SM00861 Transketolase, pyrimidine binding domain AEA00_08280 SM00507 HNH nucleases AEA00_08310 SM00465 GIY-YIG type nucleases (URI domain) AEA00_08320 SM00091 PAS domain AEA00_08320 SM00387 Histidine kinase-like ATPases AEA00_08320 SM00388 His Kinase A (phosphoacceptor) domain AEA00_08320 SM00448 cheY-homologous receiver domain AEA00_08345 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA00_08345 SM00091 PAS domain AEA00_08345 SM00387 Histidine kinase-like ATPases AEA00_08345 SM00388 His Kinase A (phosphoacceptor) domain AEA00_08345 SM00448 cheY-homologous receiver domain AEA00_08360 SM00478 endonuclease III AEA00_08365 SM00382 ATPases associated with a variety of cellular activities AEA00_08365 SM00962 SRP54-type protein, GTPase domain AEA00_08365 SM00963 SRP54-type protein, helical bundle domain AEA00_08370 SM00342 helix_turn_helix, arabinose operon control protein AEA00_08395 SM01130 AEA00_08395 AEA00_08490 SM00387 Histidine kinase-like ATPases AEA00_08560 SM00344 helix_turn_helix ASNC type AEA00_08575 SM01323 AEA00_08575 AEA00_08620 SM00354 helix_turn _helix lactose operon repressor AEA00_08645 SM00342 helix_turn_helix, arabinose operon control protein AEA00_08660 SM00448 cheY-homologous receiver domain AEA00_08660 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AEA00_08665 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA00_08665 SM00091 PAS domain AEA00_08665 SM00387 Histidine kinase-like ATPases AEA00_08665 SM00388 His Kinase A (phosphoacceptor) domain AEA00_08665 SM00448 cheY-homologous receiver domain AEA00_08665 SM01079 AEA00_08665 AEA00_08715 SM00267 diguanylate cyclase AEA00_08715 SM00448 cheY-homologous receiver domain AEA00_08725 SM01230 AEA00_08725 AEA00_08735 SM01230 AEA00_08735 AEA00_08765 SM00382 ATPases associated with a variety of cellular activities AEA00_08800 SM00116 Domain in cystathionine beta-synthase and other proteins. AEA00_08800 SM01091 Transporter associated domain AEA00_08825 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA00_08880 SM00487 DEAD-like helicases superfamily AEA00_08880 SM00490 helicase superfamily c-terminal domain AEA00_08890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_08890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_08895 SM00260 Two component signalling adaptor domain AEA00_08900 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA00_08900 SM00267 diguanylate cyclase AEA00_08925 SM00528 Domain in histone-like proteins of HNS family AEA00_08940 SM00474 3'-5' exonuclease AEA00_08975 SM00646 AEA00_08975 AEA00_08980 SM00853 MutL C terminal dimerisation domain AEA00_08980 SM01340 AEA00_08980 AEA00_09000 SM00822 AEA00_09000 AEA00_09015 SM00052 Putative diguanylate phosphodiesterase AEA00_09015 SM00267 diguanylate cyclase AEA00_09025 SM01322 AEA00_09025 AEA00_09035 SM00357 Cold shock protein domain AEA00_09060 SM00487 DEAD-like helicases superfamily AEA00_09060 SM00490 helicase superfamily c-terminal domain AEA00_09065 SM00382 ATPases associated with a variety of cellular activities AEA00_09100 SM00052 Putative diguanylate phosphodiesterase AEA00_09100 SM00267 diguanylate cyclase AEA00_09100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_09110 SM00841 Elongation factor P, C-terminal AEA00_09110 SM01185 AEA00_09110 AEA00_09155 SM00849 Metallo-beta-lactamase superfamily AEA00_09190 SM01234 AEA00_09190 AEA00_09225 SM00840 AEA00_09225 AEA00_09265 SM00859 Semialdehyde dehydrogenase, NAD binding domain AEA00_09285 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AEA00_09295 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AEA00_09325 SM00382 ATPases associated with a variety of cellular activities AEA00_09330 SM00382 ATPases associated with a variety of cellular activities AEA00_09345 SM00028 Tetratricopeptide repeats AEA00_09385 SM00382 ATPases associated with a variety of cellular activities AEA00_09410 SM00363 S4 RNA-binding domain AEA00_09435 SM00354 helix_turn _helix lactose operon repressor AEA00_09510 SM00316 Ribosomal protein S1-like RNA-binding domain AEA00_09515 SM00411 bacterial (prokaryotic) histone like domain AEA00_09525 SM00028 Tetratricopeptide repeats AEA00_09535 SM00822 AEA00_09535 AEA00_09560 SM00116 Domain in cystathionine beta-synthase and other proteins. AEA00_09560 SM01240 AEA00_09560 AEA00_09580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_09585 SM00421 helix_turn_helix, Lux Regulon AEA00_09585 SM00448 cheY-homologous receiver domain AEA00_09590 SM00387 Histidine kinase-like ATPases AEA00_09595 SM00342 helix_turn_helix, arabinose operon control protein AEA00_09635 SM00529 Helix-turn-helix diphteria tox regulatory element AEA00_09645 SM00479 AEA00_09645 AEA00_09715 SM00316 Ribosomal protein S1-like RNA-binding domain AEA00_09715 SM00732 Likely ribonuclease with RNase H fold. AEA00_09720 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA00_09720 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA00_09720 SM00091 PAS domain AEA00_09720 SM00387 Histidine kinase-like ATPases AEA00_09720 SM00388 His Kinase A (phosphoacceptor) domain AEA00_09720 SM00448 cheY-homologous receiver domain AEA00_09725 SM00448 cheY-homologous receiver domain AEA00_09810 SM00382 ATPases associated with a variety of cellular activities AEA00_09860 SM00382 ATPases associated with a variety of cellular activities AEA00_09870 SM00849 Metallo-beta-lactamase superfamily AEA00_09885 SM00382 ATPases associated with a variety of cellular activities AEA00_09900 SM00226 Low molecular weight phosphatase family AEA00_09910 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AEA00_09910 SM00465 GIY-YIG type nucleases (URI domain) AEA00_10005 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA00_10015 SM00984 UDP binding domain AEA00_10035 SM00450 Rhodanese Homology Domain AEA00_10040 SM00421 helix_turn_helix, Lux Regulon AEA00_10040 SM00448 cheY-homologous receiver domain AEA00_10050 SM00316 Ribosomal protein S1-like RNA-binding domain AEA00_10055 SM00363 S4 RNA-binding domain AEA00_10155 SM01068 Putative carbohydrate binding domain AEA00_10160 SM00091 PAS domain AEA00_10160 SM00387 Histidine kinase-like ATPases AEA00_10165 SM00448 cheY-homologous receiver domain AEA00_10195 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_10195 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_10265 SM00318 Staphylococcal nuclease homologues AEA00_10285 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA00_10285 SM00387 Histidine kinase-like ATPases AEA00_10285 SM00388 His Kinase A (phosphoacceptor) domain AEA00_10315 SM00869 Autotransporter beta-domain AEA00_10320 SM00869 Autotransporter beta-domain AEA00_10325 SM00052 Putative diguanylate phosphodiesterase AEA00_10380 SM00858 AEA00_10380 AEA00_10395 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEA00_10420 SM00448 cheY-homologous receiver domain AEA00_10420 SM01012 AEA00_10420 AEA00_10440 SM00852 Probable molybdopterin binding domain AEA00_10495 SM00450 Rhodanese Homology Domain AEA00_10500 SM00852 Probable molybdopterin binding domain AEA00_10505 SM00382 ATPases associated with a variety of cellular activities AEA00_10510 SM00564 beta-propeller repeat AEA00_10525 SM00028 Tetratricopeptide repeats AEA00_10535 SM00562 AEA00_10535 AEA00_10560 SM00382 ATPases associated with a variety of cellular activities AEA00_10580 SM00382 ATPases associated with a variety of cellular activities AEA00_10580 SM00843 AEA00_10580 AEA00_10600 SM00316 Ribosomal protein S1-like RNA-binding domain AEA00_10605 SM00382 ATPases associated with a variety of cellular activities AEA00_10605 SM01086 C-terminal, D2-small domain, of ClpB protein AEA00_10630 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_10645 SM00052 Putative diguanylate phosphodiesterase AEA00_10645 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA00_10645 SM00091 PAS domain AEA00_10645 SM00267 diguanylate cyclase AEA00_10650 SM00091 PAS domain AEA00_10650 SM00387 Histidine kinase-like ATPases AEA00_10655 SM00052 Putative diguanylate phosphodiesterase AEA00_10655 SM00267 diguanylate cyclase AEA00_10655 SM00448 cheY-homologous receiver domain AEA00_10660 SM00387 Histidine kinase-like ATPases AEA00_10675 SM00858 AEA00_10675 AEA00_10680 SM00260 Two component signalling adaptor domain AEA00_10680 SM00448 cheY-homologous receiver domain AEA00_10725 SM00047 Lysozyme subfamily 2 AEA00_10765 SM00421 helix_turn_helix, Lux Regulon AEA00_10765 SM00448 cheY-homologous receiver domain AEA00_10775 SM00448 cheY-homologous receiver domain AEA00_10780 SM00382 ATPases associated with a variety of cellular activities AEA00_10830 SM00382 ATPases associated with a variety of cellular activities AEA00_10885 SM00267 diguanylate cyclase AEA00_10890 SM00267 diguanylate cyclase AEA00_10895 SM00052 Putative diguanylate phosphodiesterase AEA00_10895 SM00267 diguanylate cyclase AEA00_10915 SM00382 ATPases associated with a variety of cellular activities AEA00_10915 SM00962 SRP54-type protein, GTPase domain AEA00_10930 SM00448 cheY-homologous receiver domain AEA00_10940 SM00073 Histidine Phosphotransfer domain AEA00_10940 SM00260 Two component signalling adaptor domain AEA00_10940 SM00387 Histidine kinase-like ATPases AEA00_10940 SM01231 AEA00_10940 AEA00_11015 SM00260 Two component signalling adaptor domain AEA00_11025 SM00448 cheY-homologous receiver domain AEA00_11035 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_11035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_11045 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_11045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_11045 SM01049 AEA00_11045 AEA00_11050 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_11050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_11055 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_11055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_11060 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_11060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_11065 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_11065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_11070 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_11070 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_11075 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_11075 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_11085 SM00260 Two component signalling adaptor domain AEA00_11095 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_11095 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA00_11100 SM00138 Methyltransferase, chemotaxis proteins AEA00_11110 SM00448 cheY-homologous receiver domain AEA00_11115 SM00052 Putative diguanylate phosphodiesterase AEA00_11115 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA00_11115 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA00_11115 SM00091 PAS domain AEA00_11115 SM00267 diguanylate cyclase AEA00_11135 SM00966 SpoVT / AbrB like domain AEA00_11160 SM00073 Histidine Phosphotransfer domain AEA00_11160 SM00387 Histidine kinase-like ATPases AEA00_11160 SM00388 His Kinase A (phosphoacceptor) domain AEA00_11160 SM00448 cheY-homologous receiver domain AEA00_11170 SM00448 cheY-homologous receiver domain AEA00_11170 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AEA00_11180 SM00937 AEA00_11180 AEA00_11185 SM00850 LytTr DNA-binding domain AEA00_11225 SM00851 MGS-like domain AEA00_11225 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AEA00_11235 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AEA00_11270 SM00899 AEA00_11270 AEA00_11290 SM00841 Elongation factor P, C-terminal AEA00_11290 SM01185 AEA00_11290 AEA00_11340 SM01007 Class II Aldolase and Adducin N-terminal domain AEA00_11415 SM00100 Cyclic nucleotide-monophosphate binding domain AEA00_11415 SM00419 helix_turn_helix, cAMP Regulatory protein AEA00_11530 SM00014 Acid phosphatase homologues AEA00_11540 SM00387 Histidine kinase-like ATPases AEA00_11555 SM00052 Putative diguanylate phosphodiesterase AEA00_11555 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA00_11555 SM00267 diguanylate cyclase AEA00_11625 SM00646 AEA00_11625 AEA00_11665 SM00758 AEA00_11665 AEA00_11705 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AEA00_11730 SM01130 AEA00_11730 AEA00_11750 SM00670 Large family of predicted nucleotide-binding domains AEA00_11795 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA00_11795 SM00091 PAS domain AEA00_11795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA00_11810 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AEA00_11820 SM00382 ATPases associated with a variety of cellular activities AEA00_11870 SM00382 ATPases associated with a variety of cellular activities AEA00_11880 SM01103 AEA00_11880 AEA00_11890 SM00257 Lysin motif AEA00_11910 SM00463 Small MutS-related domain AEA00_11935 SM01192 AEA00_11935 AEA00_11935 SM01193 AEA00_11935 AEA00_11960 SM00387 Histidine kinase-like ATPases AEA00_11960 SM00433 TopoisomeraseII AEA00_11990 SM01091 Transporter associated domain AEA00_12015 SM00382 ATPases associated with a variety of cellular activities AEA00_12025 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA00_12155 SM00028 Tetratricopeptide repeats AEA00_12160 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA00_12160 SM00091 PAS domain AEA00_12160 SM00387 Histidine kinase-like ATPases AEA00_12160 SM00388 His Kinase A (phosphoacceptor) domain AEA00_12160 SM00448 cheY-homologous receiver domain AEA00_12165 SM00382 ATPases associated with a variety of cellular activities AEA00_12170 SM00448 cheY-homologous receiver domain AEA00_12175 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA00_12175 SM00091 PAS domain AEA00_12175 SM00387 Histidine kinase-like ATPases AEA00_12175 SM00388 His Kinase A (phosphoacceptor) domain AEA00_12175 SM00448 cheY-homologous receiver domain AEA00_12180 SM00477 DNA/RNA non-specific endonuclease AEA00_12180 SM00892 DNA/RNA non-specific endonuclease AEA00_12265 SM00966 SpoVT / AbrB like domain AEA00_12270 SM00857 Resolvase, N terminal domain AEA00_12385 SM00830 Chorismate mutase type II AEA00_12405 SM00240 Forkhead associated domain AEA00_12425 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEA00_12425 SM00866 AEA00_12425 AEA00_12460 SM00564 beta-propeller repeat AEA00_12465 SM00434 DNA Topoisomerase IV AEA00_12485 SM00292 breast cancer carboxy-terminal domain AEA00_12485 SM00532 Ligase N family AEA00_12495 SM00771 ZipA, C-terminal domain (FtsZ-binding) AEA00_12500 SM00968 SMC proteins Flexible Hinge Domain AEA00_12555 SM00947 Carbonic anhydrase AEA00_12580 SM00479 AEA00_12580 AEA00_12610 SM00981 AEA00_12610 AEA00_12615 SM00382 ATPases associated with a variety of cellular activities AEA00_12640 SM00644 AEA00_12640 AEA00_12650 SM00450 Rhodanese Homology Domain AEA00_12675 SM00478 endonuclease III AEA00_12675 SM00525 AEA00_12675 AEA00_12685 SM00947 Carbonic anhydrase AEA00_12720 SM00382 ATPases associated with a variety of cellular activities AEA00_12735 SM00479 AEA00_12735 AEA00_12740 SM00267 diguanylate cyclase AEA00_12745 SM00967 RNA 2'-O ribose methyltransferase substrate binding AEA00_12755 SM00316 Ribosomal protein S1-like RNA-binding domain AEA00_12755 SM00357 Cold shock protein domain AEA00_12755 SM00955 AEA00_12755 AEA00_12780 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AEA00_12790 SM01018 B12 binding domain AEA00_12810 SM00354 helix_turn _helix lactose operon repressor AEA00_12835 SM00984 UDP binding domain AEA00_12850 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEA00_12855 SM00382 ATPases associated with a variety of cellular activities AEA00_12895 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AEA00_12905 SM00861 Transketolase, pyrimidine binding domain AEA00_12930 SM00382 ATPases associated with a variety of cellular activities AEA00_12970 SM00271 DnaJ molecular chaperone homology domain AEA00_13085 SM00487 DEAD-like helicases superfamily AEA00_13085 SM00490 helicase superfamily c-terminal domain AEA00_13125 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA00_13125 SM00267 diguanylate cyclase AEA00_13135 SM00267 diguanylate cyclase AEA00_13145 SM00822 AEA00_13145 AEA00_13240 SM00357 Cold shock protein domain AEA00_13255 SM00947 Carbonic anhydrase AEA00_13275 SM00382 ATPases associated with a variety of cellular activities AEA00_13295 SM00347 helix_turn_helix multiple antibiotic resistance protein AEA00_13325 SM00631 AEA00_13325 AEA00_13330 SM01217 AEA00_13330 AEA00_13365 SM00347 helix_turn_helix multiple antibiotic resistance protein AEA00_13370 SM00342 helix_turn_helix, arabinose operon control protein AEA00_13375 SM00434 DNA Topoisomerase IV AEA00_13400 SM00710 Parallel beta-helix repeats AEA00_13400 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AEA00_13405 SM01172 AEA00_13405 AEA00_13410 SM00671 Sel1-like repeats. AEA00_13435 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AEA00_13445 SM00972 Spore Coat Protein U domain AEA00_13460 SM00972 Spore Coat Protein U domain AEA00_13485 SM00267 diguanylate cyclase AEA00_13515 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AEA00_13555 SM00481 DNA polymerase alpha chain like domain AEA00_13875 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AEA00_13880 SM00869 Autotransporter beta-domain AEA00_13900 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA00_13900 SM00267 diguanylate cyclase AEA00_13930 SM00487 DEAD-like helicases superfamily AEA00_13930 SM00490 helicase superfamily c-terminal domain AEA00_13945 SM00357 Cold shock protein domain AEA00_13980 SM01118 AEA00_13980 AEA00_13995 SM00448 cheY-homologous receiver domain AEA00_14010 SM00358 Double-stranded RNA binding motif AEA00_14010 SM00535 Ribonuclease III family AEA00_14025 SM00838 Elongation factor G C-terminus AEA00_14030 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AEA00_14080 SM00530 Helix-turn-helix XRE-family like proteins AEA00_14120 SM00812 Alpha-L-fucosidase AEA00_14200 SM00382 ATPases associated with a variety of cellular activities AEA00_14345 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AEA00_14345 SM00534 ATPase domain of DNA mismatch repair MUTS family AEA00_14410 SM00382 ATPases associated with a variety of cellular activities AEA00_14410 SM00962 SRP54-type protein, GTPase domain AEA00_14410 SM00963 SRP54-type protein, helical bundle domain AEA00_14425 SM00813 Alpha-L-arabinofuranosidase C-terminus AEA00_14445 SM00448 cheY-homologous receiver domain AEA00_14450 SM00387 Histidine kinase-like ATPases AEA00_14450 SM00388 His Kinase A (phosphoacceptor) domain AEA00_14455 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA00_14455 SM00387 Histidine kinase-like ATPases AEA00_14455 SM00388 His Kinase A (phosphoacceptor) domain AEA00_14455 SM00448 cheY-homologous receiver domain AEA00_14460 SM00138 Methyltransferase, chemotaxis proteins AEA00_14470 SM00387 Histidine kinase-like ATPases AEA00_14470 SM00388 His Kinase A (phosphoacceptor) domain AEA00_14470 SM00448 cheY-homologous receiver domain AEA00_14505 SM00387 Histidine kinase-like ATPases AEA00_14505 SM00388 His Kinase A (phosphoacceptor) domain AEA00_14505 SM00448 cheY-homologous receiver domain AEA00_14510 SM00387 Histidine kinase-like ATPases AEA00_14510 SM00388 His Kinase A (phosphoacceptor) domain AEA00_14550 SM00342 helix_turn_helix, arabinose operon control protein AEA00_14555 SM00862 Transcriptional regulatory protein, C terminal AEA00_14565 SM00382 ATPases associated with a variety of cellular activities AEA00_14615 SM00904 Riboflavin kinase AEA00_14710 SM00244 prohibitin homologues AEA00_14735 SM00478 endonuclease III AEA00_14760 SM00421 helix_turn_helix, Lux Regulon AEA00_14760 SM00448 cheY-homologous receiver domain AEA00_14795 SM00387 Histidine kinase-like ATPases AEA00_14795 SM00388 His Kinase A (phosphoacceptor) domain AEA00_14800 SM00448 cheY-homologous receiver domain AEA00_14800 SM00862 Transcriptional regulatory protein, C terminal AEA00_14865 SM01060 AEA00_14865 AEA00_14875 SM00091 PAS domain AEA00_14875 SM00342 helix_turn_helix, arabinose operon control protein AEA00_14910 SM00481 DNA polymerase alpha chain like domain AEA00_14940 SM00974 AEA00_14940 AEA00_14955 SM01092 CO dehydrogenase flavoprotein C-terminal domain AEA00_14960 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AEA00_14965 SM01217 AEA00_14965 AEA00_14980 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AEA00_14985 SM00052 Putative diguanylate phosphodiesterase AEA00_15040 SM00855 Phosphoglycerate mutase family AEA00_15070 SM00487 DEAD-like helicases superfamily AEA00_15140 SM00788 Adenylosuccinate synthetase AEA00_15150 SM00244 prohibitin homologues AEA00_15155 SM00244 prohibitin homologues AEA00_15160 SM00448 cheY-homologous receiver domain AEA00_15165 SM00271 DnaJ molecular chaperone homology domain AEA00_15205 SM01321 AEA00_15205 AEA00_15210 SM01359 AEA00_15210 AEA00_15210 SM01360 AEA00_15210 AEA00_15255 SM00382 ATPases associated with a variety of cellular activities AEA00_15270 SM00910 AEA00_15270 AEA00_15305 SM00825 Beta-ketoacyl synthase AEA00_15315 SM00822 AEA00_15315 AEA00_15320 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AEA00_15370 SM00382 ATPases associated with a variety of cellular activities AEA00_15380 SM00460 Transglutaminase/protease-like homologues AEA00_15395 SM00493 AEA00_15395 AEA00_15405 SM00382 ATPases associated with a variety of cellular activities AEA00_15435 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA00_15440 SM00849 Metallo-beta-lactamase superfamily AEA00_15465 SM00331 Sigma factor PP2C-like phosphatases AEA00_15465 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AEA00_15470 SM00479 AEA00_15470 AEA00_15485 SM00849 Metallo-beta-lactamase superfamily AEA00_15490 SM00257 Lysin motif AEA00_15520 SM00411 bacterial (prokaryotic) histone like domain AEA00_15525 SM00382 ATPases associated with a variety of cellular activities AEA00_15525 SM00464 Found in ATP-dependent protease La (LON) AEA00_15530 SM00382 ATPases associated with a variety of cellular activities AEA00_15530 SM00994 ClpX C4-type zinc finger AEA00_15530 SM01086 C-terminal, D2-small domain, of ClpB protein AEA00_15575 SM01329 AEA00_15575 AEA00_15595 SM00448 cheY-homologous receiver domain AEA00_15595 SM00862 Transcriptional regulatory protein, C terminal AEA00_15600 SM00091 PAS domain AEA00_15600 SM00387 Histidine kinase-like ATPases AEA00_15600 SM00388 His Kinase A (phosphoacceptor) domain AEA00_15620 SM00014 Acid phosphatase homologues AEA00_15675 SM00855 Phosphoglycerate mutase family AEA00_15690 SM00829 Enoylreductase AEA00_15700 SM00382 ATPases associated with a variety of cellular activities AEA00_15730 SM00363 S4 RNA-binding domain AEA00_15745 SM00829 Enoylreductase AEA00_15790 SM00838 Elongation factor G C-terminus AEA00_15825 SM00662 RNA polymerases D AEA00_15830 SM00363 S4 RNA-binding domain AEA00_15830 SM01390 AEA00_15830 AEA00_15890 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AEA00_15895 SM01374 AEA00_15895 AEA00_15915 SM00322 K homology RNA-binding domain AEA00_15930 SM01382 AEA00_15930 AEA00_15930 SM01383 AEA00_15930 AEA00_15950 SM01403 AEA00_15950 AEA00_15960 SM00838 Elongation factor G C-terminus AEA00_15960 SM00889 Elongation factor G, domain IV AEA00_15975 SM00663 RNA polymerase I subunit A N-terminus AEA00_16000 SM00649 Ribosomal protein L11/L12 AEA00_16005 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AEA00_16005 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AEA00_16055 SM01400 AEA00_16055 AEA00_16075 SM00028 Tetratricopeptide repeats AEA00_16085 SM00937 AEA00_16085 AEA00_16090 SM00028 Tetratricopeptide repeats AEA00_16095 SM00852 Probable molybdopterin binding domain AEA00_16220 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AEA00_16220 SM00475 5'-3' exonuclease AEA00_16285 SM00421 helix_turn_helix, Lux Regulon AEA00_16290 SM00387 Histidine kinase-like ATPases AEA00_16290 SM00388 His Kinase A (phosphoacceptor) domain AEA00_16290 SM00448 cheY-homologous receiver domain AEA00_16295 SM00448 cheY-homologous receiver domain AEA00_16315 SM00342 helix_turn_helix, arabinose operon control protein AEA00_16365 SM00347 helix_turn_helix multiple antibiotic resistance protein AEA00_16400 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEA00_16400 SM00895 AEA00_16400 AEA00_16460 SM00650 Ribosomal RNA adenine dimethylases AEA00_16515 SM00387 Histidine kinase-like ATPases AEA00_16515 SM00388 His Kinase A (phosphoacceptor) domain AEA00_16520 SM00448 cheY-homologous receiver domain AEA00_16520 SM00862 Transcriptional regulatory protein, C terminal AEA00_16530 SM00382 ATPases associated with a variety of cellular activities AEA00_16550 SM00382 ATPases associated with a variety of cellular activities AEA00_16660 SM00996 S-adenosyl-L-homocysteine hydrolase AEA00_16660 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AEA00_16685 SM00642 Alpha-amylase domain AEA00_16715 SM00829 Enoylreductase AEA00_16755 SM00957 SecA DEAD-like domain AEA00_16755 SM00958 SecA preprotein cross-linking domain AEA00_16775 SM00864 Tubulin/FtsZ family, GTPase domain AEA00_16775 SM00865 Tubulin/FtsZ family, C-terminal domain AEA00_16780 SM00842 Cell division protein FtsA AEA00_16890 SM00448 cheY-homologous receiver domain AEA00_16890 SM00862 Transcriptional regulatory protein, C terminal AEA00_16895 SM00387 Histidine kinase-like ATPases AEA00_16895 SM00388 His Kinase A (phosphoacceptor) domain AEA00_16920 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AEA00_16980 SM00382 ATPases associated with a variety of cellular activities AEA00_17055 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEA00_17055 SM00866 AEA00_17055 AEA00_17115 SM00382 ATPases associated with a variety of cellular activities AEA00_17140 SM01211 AEA00_17140 AEA00_17200 SM00656 AEA00_17200 AEA00_17205 SM00656 AEA00_17205 AEA00_17235 SM00528 Domain in histone-like proteins of HNS family AEA00_17250 SM00382 ATPases associated with a variety of cellular activities AEA00_17280 SM00882 Coenzyme A transferase AEA00_17285 SM00882 Coenzyme A transferase AEA00_17320 SM00893 Electron transfer flavoprotein domain AEA00_17325 SM00893 Electron transfer flavoprotein domain AEA00_17410 SM00382 ATPases associated with a variety of cellular activities AEA00_17430 SM00116 Domain in cystathionine beta-synthase and other proteins. AEA00_17465 SM00487 DEAD-like helicases superfamily AEA00_17465 SM00490 helicase superfamily c-terminal domain AEA00_17485 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA00_17510 SM00825 Beta-ketoacyl synthase AEA00_17575 SM00382 ATPases associated with a variety of cellular activities AEA00_17595 SM00382 ATPases associated with a variety of cellular activities AEA00_17595 SM00448 cheY-homologous receiver domain AEA00_17630 SM00830 Chorismate mutase type II AEA00_17640 SM00382 ATPases associated with a variety of cellular activities AEA00_17710 SM00986 Uracil DNA glycosylase superfamily AEA00_17710 SM00987 UreE urease accessory protein, C-terminal domain AEA00_17745 SM00382 ATPases associated with a variety of cellular activities AEA00_17745 SM00930 AEA00_17745 AEA00_17810 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA00_17810 SM00091 PAS domain AEA00_17810 SM00387 Histidine kinase-like ATPases AEA00_17810 SM00388 His Kinase A (phosphoacceptor) domain AEA00_17810 SM00448 cheY-homologous receiver domain AEA00_17830 SM01005 Alanine racemase, C-terminal domain AEA00_17840 SM00344 helix_turn_helix ASNC type AEA00_17895 SM00382 ATPases associated with a variety of cellular activities AEA00_17910 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AEA00_17915 SM00986 Uracil DNA glycosylase superfamily AEA00_17915 SM00987 UreE urease accessory protein, C-terminal domain AEA00_17920 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA00_17975 SM00448 cheY-homologous receiver domain AEA00_17975 SM00850 LytTr DNA-binding domain AEA00_17980 SM00387 Histidine kinase-like ATPases AEA00_18025 SM00091 PAS domain AEA00_18025 SM00138 Methyltransferase, chemotaxis proteins AEA00_18025 SM00911 HWE histidine kinase AEA00_18030 SM00448 cheY-homologous receiver domain AEA00_18040 SM00382 ATPases associated with a variety of cellular activities AEA00_18040 SM00448 cheY-homologous receiver domain AEA00_18095 SM00382 ATPases associated with a variety of cellular activities AEA00_18135 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AEA00_18175 SM00382 ATPases associated with a variety of cellular activities AEA00_18180 SM00631 AEA00_18180 AEA00_18195 SM00822 AEA00_18195 AEA00_18235 SM00267 diguanylate cyclase AEA00_18335 SM00257 Lysin motif AEA00_18360 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AEA00_18360 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AEA00_18360 SM00493 AEA00_18360 AEA00_18380 SM00091 PAS domain AEA00_18380 SM00267 diguanylate cyclase AEA00_18450 SM00986 Uracil DNA glycosylase superfamily AEA00_18450 SM00987 UreE urease accessory protein, C-terminal domain AEA00_18455 SM00448 cheY-homologous receiver domain AEA00_18465 SM00382 ATPases associated with a variety of cellular activities AEA00_18470 SM00487 DEAD-like helicases superfamily AEA00_18470 SM00490 helicase superfamily c-terminal domain AEA00_18480 SM00357 Cold shock protein domain AEA00_18480 SM00382 ATPases associated with a variety of cellular activities AEA00_18480 SM00959 Rho termination factor, N-terminal domain AEA00_18515 SM00257 Lysin motif AEA00_18565 SM01150 AEA00_18565 AEA00_18625 SM00644 AEA00_18625 AEA00_18635 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AEA00_18670 SM01217 AEA00_18670 AEA00_18675 SM00905 Dihydroneopterin aldolase AEA00_18700 SM00400 zinc finger AEA00_18700 SM00493 AEA00_18700 AEA00_18700 SM00766 DNA primase DnaG DnaB-binding AEA00_18890 SM00363 S4 RNA-binding domain AEA00_18935 SM00470 ParB-like nuclease domain AEA00_18960 SM01259 AEA00_18960 AEA00_18990 SM00836 DALR anticodon binding domain AEA00_18990 SM01016 Arginyl tRNA synthetase N terminal dom AEA00_19050 SM00938 Nitrogen regulatory protein P-II AEA00_19075 SM00052 Putative diguanylate phosphodiesterase AEA00_19095 SM00986 Uracil DNA glycosylase superfamily AEA00_19095 SM00987 UreE urease accessory protein, C-terminal domain AEA00_19105 SM00244 prohibitin homologues AEA00_19165 SM00448 cheY-homologous receiver domain AEA00_19165 SM00862 Transcriptional regulatory protein, C terminal AEA00_19170 SM00387 Histidine kinase-like ATPases AEA00_19170 SM00388 His Kinase A (phosphoacceptor) domain AEA00_19190 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AEA00_19225 SM01060 AEA00_19225 AEA00_19240 SM00421 helix_turn_helix, Lux Regulon AEA00_19240 SM00448 cheY-homologous receiver domain AEA00_19255 SM00382 ATPases associated with a variety of cellular activities AEA00_19305 SM00849 Metallo-beta-lactamase superfamily AEA00_19335 SM00960 Roadblock/LC7 domain AEA00_19360 SM00342 helix_turn_helix, arabinose operon control protein AEA00_19415 SM00387 Histidine kinase-like ATPases AEA00_19415 SM00388 His Kinase A (phosphoacceptor) domain AEA00_19420 SM00448 cheY-homologous receiver domain AEA00_19420 SM00862 Transcriptional regulatory protein, C terminal AEA00_19445 SM00248 ankyrin repeats AEA00_19450 SM01060 AEA00_19450 AEA00_19455 SM00491 AEA00_19455 AEA00_19485 SM01004 Delta-aminolevulinic acid dehydratase AEA00_19525 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AEA00_19545 SM00382 ATPases associated with a variety of cellular activities AEA00_19555 SM00530 Helix-turn-helix XRE-family like proteins AEA00_19585 SM00382 ATPases associated with a variety of cellular activities AEA00_19630 SM00881 CoA binding domain AEA00_19635 SM00116 Domain in cystathionine beta-synthase and other proteins. AEA00_19635 SM00924 MgtE intracellular N domain AEA00_19640 SM01057 Eukaryotic-type carbonic anhydrase AEA00_19660 SM00226 Low molecular weight phosphatase family AEA00_19665 SM00248 ankyrin repeats AEA00_19675 SM00825 Beta-ketoacyl synthase AEA00_19700 SM00822 AEA00_19700 AEA00_19735 SM00563 Phosphate acyltransferases AEA00_19785 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AEA00_19785 SM00474 3'-5' exonuclease AEA00_19785 SM00475 5'-3' exonuclease AEA00_19785 SM00482 DNA polymerase A domain AEA00_19810 SM01266 AEA00_19810 AEA00_19830 SM00155 Phospholipase D. Active site motifs. AEA00_19940 SM00248 ankyrin repeats AEA00_19945 SM00248 ankyrin repeats AEA00_20000 SM00421 helix_turn_helix, Lux Regulon AEA00_20000 SM00448 cheY-homologous receiver domain AEA00_20050 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AEA00_20065 SM00346 helix_turn_helix isocitrate lyase regulation AEA00_20070 SM00342 helix_turn_helix, arabinose operon control protein AEA00_20085 SM00091 PAS domain AEA00_20085 SM00387 Histidine kinase-like ATPases AEA00_20085 SM00388 His Kinase A (phosphoacceptor) domain AEA00_20085 SM00448 cheY-homologous receiver domain AEA00_20105 SM00564 beta-propeller repeat AEA00_20135 SM00836 DALR anticodon binding domain AEA00_20145 SM00382 ATPases associated with a variety of cellular activities AEA00_20215 SM00354 helix_turn _helix lactose operon repressor AEA00_20230 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AEA00_20240 SM00758 AEA00_20240 AEA00_20240 SM01217 AEA00_20240 AEA00_20280 SM00612 AEA00_20280 AEA00_20295 SM00633 Glycosyl hydrolase family 10 AEA00_20310 SM00633 Glycosyl hydrolase family 10 AEA00_20355 SM00829 Enoylreductase AEA00_20370 SM00354 helix_turn _helix lactose operon repressor AEA00_20390 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AEA00_20435 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA00_20435 SM00388 His Kinase A (phosphoacceptor) domain AEA00_20450 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AEA00_20450 SM01232 AEA00_20450 AEA00_20485 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA00_20485 SM00091 PAS domain AEA00_20550 SM00347 helix_turn_helix multiple antibiotic resistance protein AEA00_20595 SM00155 Phospholipase D. Active site motifs. AEA00_20645 SM00369 Leucine-rich repeats, typical (most populated) subfamily AEA00_20665 SM00530 Helix-turn-helix XRE-family like proteins AEA00_20720 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AEA00_20720 SM00736 Dystroglycan-type cadherin-like domains. AEA00_20720 SM00869 Autotransporter beta-domain AEA00_20750 SM00382 ATPases associated with a variety of cellular activities AEA00_20800 SM00829 Enoylreductase AEA00_20840 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA00_20840 SM00091 PAS domain AEA00_20840 SM00267 diguanylate cyclase AEA00_20905 SM00014 Acid phosphatase homologues AEA00_20920 SM00028 Tetratricopeptide repeats