AEA01_00020 SM00014 Acid phosphatase homologues AEA01_00035 SM00028 Tetratricopeptide repeats AEA01_00055 SM00382 ATPases associated with a variety of cellular activities AEA01_00055 SM00760 Bacterial dnaA protein helix-turn-helix domain AEA01_00060 SM00480 DNA polymerase III beta subunit AEA01_00070 SM00387 Histidine kinase-like ATPases AEA01_00070 SM00433 TopoisomeraseII AEA01_00085 SM00028 Tetratricopeptide repeats AEA01_00120 SM00155 Phospholipase D. Active site motifs. AEA01_00125 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA01_00160 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AEA01_00160 SM00245 tail specific protease AEA01_00200 SM00829 Enoylreductase AEA01_00315 SM00487 DEAD-like helicases superfamily AEA01_00315 SM00490 helicase superfamily c-terminal domain AEA01_00380 SM00421 helix_turn_helix, Lux Regulon AEA01_00550 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AEA01_00575 SM00421 helix_turn_helix, Lux Regulon AEA01_00575 SM00448 cheY-homologous receiver domain AEA01_00600 SM00862 Transcriptional regulatory protein, C terminal AEA01_00675 SM00642 Alpha-amylase domain AEA01_00680 SM00642 Alpha-amylase domain AEA01_00685 SM00642 Alpha-amylase domain AEA01_00765 SM00354 helix_turn _helix lactose operon repressor AEA01_00800 SM00344 helix_turn_helix ASNC type AEA01_00820 SM00382 ATPases associated with a variety of cellular activities AEA01_00835 SM00382 ATPases associated with a variety of cellular activities AEA01_00890 SM00855 Phosphoglycerate mutase family AEA01_00895 SM00867 YceI-like domain AEA01_00900 SM00155 Phospholipase D. Active site motifs. AEA01_00910 SM00563 Phosphate acyltransferases AEA01_00920 SM00028 Tetratricopeptide repeats AEA01_00940 SM01230 AEA01_00940 AEA01_00945 SM00938 Nitrogen regulatory protein P-II AEA01_00955 SM00387 Histidine kinase-like ATPases AEA01_00955 SM00388 His Kinase A (phosphoacceptor) domain AEA01_00960 SM00382 ATPases associated with a variety of cellular activities AEA01_00960 SM00448 cheY-homologous receiver domain AEA01_01030 SM00450 Rhodanese Homology Domain AEA01_01150 SM00563 Phosphate acyltransferases AEA01_01195 SM00100 Cyclic nucleotide-monophosphate binding domain AEA01_01195 SM00267 diguanylate cyclase AEA01_01220 SM00878 Biotin carboxylase C-terminal domain AEA01_01245 SM00953 AEA01_01245 AEA01_01285 SM00833 Cobalamin synthesis protein cobW C-terminal domain AEA01_01315 SM00347 helix_turn_helix multiple antibiotic resistance protein AEA01_01350 SM00829 Enoylreductase AEA01_01375 SM00487 DEAD-like helicases superfamily AEA01_01375 SM00490 helicase superfamily c-terminal domain AEA01_01375 SM00847 Helicase associated domain (HA2) Add an annotation AEA01_01380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA01_01380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA01_01450 SM00155 Phospholipase D. Active site motifs. AEA01_01605 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA01_01755 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AEA01_01760 SM00347 helix_turn_helix multiple antibiotic resistance protein AEA01_01780 SM00342 helix_turn_helix, arabinose operon control protein AEA01_01810 SM00420 helix_turn_helix, Deoxyribose operon repressor AEA01_01810 SM01134 AEA01_01810 AEA01_01825 SM00882 Coenzyme A transferase AEA01_01830 SM00882 Coenzyme A transferase AEA01_01850 SM00998 Adenylosuccinate lyase C-terminus AEA01_01870 SM00346 helix_turn_helix isocitrate lyase regulation AEA01_01875 SM00090 RIO-like kinase AEA01_01890 SM01228 AEA01_01890 AEA01_01945 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA01_01945 SM00876 Biotin and Thiamin Synthesis associated domain AEA01_02055 SM00267 diguanylate cyclase AEA01_02065 SM00642 Alpha-amylase domain AEA01_02070 SM00642 Alpha-amylase domain AEA01_02080 SM00642 Alpha-amylase domain AEA01_02090 SM00642 Alpha-amylase domain AEA01_02140 SM00822 AEA01_02140 AEA01_02150 SM00487 DEAD-like helicases superfamily AEA01_02150 SM00490 helicase superfamily c-terminal domain AEA01_02165 SM00326 Src homology 3 domains AEA01_02170 SM00861 Transketolase, pyrimidine binding domain AEA01_02200 SM00347 helix_turn_helix multiple antibiotic resistance protein AEA01_02300 SM00271 DnaJ molecular chaperone homology domain AEA01_02320 SM00046 Diacylglycerol kinase catalytic domain (presumed) AEA01_02340 SM00487 DEAD-like helicases superfamily AEA01_02370 SM00903 Flavin reductase like domain AEA01_02390 SM00100 Cyclic nucleotide-monophosphate binding domain AEA01_02390 SM00419 helix_turn_helix, cAMP Regulatory protein AEA01_02445 SM00073 Histidine Phosphotransfer domain AEA01_02445 SM00387 Histidine kinase-like ATPases AEA01_02445 SM00388 His Kinase A (phosphoacceptor) domain AEA01_02445 SM00448 cheY-homologous receiver domain AEA01_02450 SM00052 Putative diguanylate phosphodiesterase AEA01_02450 SM00267 diguanylate cyclase AEA01_02450 SM00448 cheY-homologous receiver domain AEA01_02495 SM00563 Phosphate acyltransferases AEA01_02515 SM01209 AEA01_02515 AEA01_02515 SM01210 AEA01_02515 AEA01_02520 SM00798 AICARFT/IMPCHase bienzyme AEA01_02520 SM00851 MGS-like domain AEA01_02535 SM00195 Dual specificity phosphatase, catalytic domain AEA01_02555 SM00563 Phosphate acyltransferases AEA01_02575 SM00530 Helix-turn-helix XRE-family like proteins AEA01_02600 SM00878 Biotin carboxylase C-terminal domain AEA01_02635 SM00883 Chaperonin 10 Kd subunit AEA01_02645 SM00487 DEAD-like helicases superfamily AEA01_02645 SM00490 helicase superfamily c-terminal domain AEA01_02745 SM00965 Secretin and TonB N terminus short domain AEA01_02800 SM00867 YceI-like domain AEA01_02845 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AEA01_02855 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEA01_02855 SM00895 AEA01_02855 AEA01_02880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA01_02880 SM00331 Sigma factor PP2C-like phosphatases AEA01_03025 SM00267 diguanylate cyclase AEA01_03075 SM00062 Bacterial periplasmic substrate-binding proteins AEA01_03125 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AEA01_03125 SM01232 AEA01_03125 AEA01_03135 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA01_03145 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA01_03145 SM00091 PAS domain AEA01_03145 SM00267 diguanylate cyclase AEA01_03150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA01_03150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA01_03150 SM01049 AEA01_03150 AEA01_03155 SM00637 AEA01_03155 AEA01_03165 SM00267 diguanylate cyclase AEA01_03200 SM00448 cheY-homologous receiver domain AEA01_03200 SM00850 LytTr DNA-binding domain AEA01_03295 SM00382 ATPases associated with a variety of cellular activities AEA01_03295 SM01086 C-terminal, D2-small domain, of ClpB protein AEA01_03330 SM00267 diguanylate cyclase AEA01_03335 SM01263 AEA01_03335 AEA01_03350 SM00564 beta-propeller repeat AEA01_03370 SM00062 Bacterial periplasmic substrate-binding proteins AEA01_03370 SM00248 ankyrin repeats AEA01_03400 SM00382 ATPases associated with a variety of cellular activities AEA01_03410 SM00268 Actin AEA01_03480 SM00710 Parallel beta-helix repeats AEA01_03495 SM00936 Penicillin-binding protein 5, C-terminal domain AEA01_03520 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA01_03525 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AEA01_03525 SM00245 tail specific protease AEA01_03580 SM01350 AEA01_03580 AEA01_03590 SM00749 bacterial OsmY and nodulation domain AEA01_03595 SM00387 Histidine kinase-like ATPases AEA01_03595 SM00388 His Kinase A (phosphoacceptor) domain AEA01_03600 SM00448 cheY-homologous receiver domain AEA01_03605 SM00387 Histidine kinase-like ATPases AEA01_03605 SM00388 His Kinase A (phosphoacceptor) domain AEA01_03605 SM00448 cheY-homologous receiver domain AEA01_03630 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AEA01_03655 SM00382 ATPases associated with a variety of cellular activities AEA01_03705 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEA01_03705 SM00866 AEA01_03705 AEA01_03715 SM00354 helix_turn _helix lactose operon repressor AEA01_03730 SM00245 tail specific protease AEA01_03800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA01_03800 SM00387 Histidine kinase-like ATPases AEA01_03800 SM00388 His Kinase A (phosphoacceptor) domain AEA01_03805 SM00448 cheY-homologous receiver domain AEA01_03805 SM00862 Transcriptional regulatory protein, C terminal AEA01_03835 SM00829 Enoylreductase AEA01_03855 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEA01_03935 SM00450 Rhodanese Homology Domain AEA01_03970 SM01154 AEA01_03970 AEA01_03980 SM00642 Alpha-amylase domain AEA01_03995 SM00354 helix_turn _helix lactose operon repressor AEA01_04015 SM00448 cheY-homologous receiver domain AEA01_04015 SM00862 Transcriptional regulatory protein, C terminal AEA01_04020 SM00387 Histidine kinase-like ATPases AEA01_04020 SM00388 His Kinase A (phosphoacceptor) domain AEA01_04035 SM00421 helix_turn_helix, Lux Regulon AEA01_04035 SM00448 cheY-homologous receiver domain AEA01_04045 SM00387 Histidine kinase-like ATPases AEA01_04045 SM00388 His Kinase A (phosphoacceptor) domain AEA01_04045 SM00448 cheY-homologous receiver domain AEA01_04060 SM00919 Malic enzyme, NAD binding domain AEA01_04060 SM01274 AEA01_04060 AEA01_04110 SM00267 diguanylate cyclase AEA01_04135 SM01329 AEA01_04135 AEA01_04140 SM00917 LeuA allosteric (dimerisation) domain AEA01_04170 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA01_04190 SM00862 Transcriptional regulatory protein, C terminal AEA01_04195 SM00342 helix_turn_helix, arabinose operon control protein AEA01_04325 SM00464 Found in ATP-dependent protease La (LON) AEA01_04400 SM00028 Tetratricopeptide repeats AEA01_04400 SM00421 helix_turn_helix, Lux Regulon AEA01_04475 SM00849 Metallo-beta-lactamase superfamily AEA01_04500 SM00382 ATPases associated with a variety of cellular activities AEA01_04505 SM00903 Flavin reductase like domain AEA01_04580 SM00861 Transketolase, pyrimidine binding domain AEA01_04595 SM00028 Tetratricopeptide repeats AEA01_04595 SM00327 von Willebrand factor (vWF) type A domain AEA01_04600 SM00327 von Willebrand factor (vWF) type A domain AEA01_04615 SM00382 ATPases associated with a variety of cellular activities AEA01_04620 SM00965 Secretin and TonB N terminus short domain AEA01_04670 SM00487 DEAD-like helicases superfamily AEA01_04670 SM00490 helicase superfamily c-terminal domain AEA01_04680 SM00858 AEA01_04680 AEA01_04690 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AEA01_04705 SM01130 AEA01_04705 AEA01_04715 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AEA01_04715 SM00954 Region found in RelA / SpoT proteins AEA01_04720 SM01409 AEA01_04720 AEA01_04725 SM00072 Guanylate kinase homologues. AEA01_04750 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA01_04790 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AEA01_04830 SM00506 Appr-1"-p processing enzyme AEA01_04860 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA01_04860 SM00387 Histidine kinase-like ATPases AEA01_04930 SM00967 RNA 2'-O ribose methyltransferase substrate binding AEA01_04960 SM00354 helix_turn _helix lactose operon repressor AEA01_05015 SM00869 Autotransporter beta-domain AEA01_05045 SM00530 Helix-turn-helix XRE-family like proteins AEA01_05125 SM00267 diguanylate cyclase AEA01_05185 SM00528 Domain in histone-like proteins of HNS family AEA01_05190 SM00642 Alpha-amylase domain AEA01_05200 SM00448 cheY-homologous receiver domain AEA01_05200 SM00862 Transcriptional regulatory protein, C terminal AEA01_05205 SM00387 Histidine kinase-like ATPases AEA01_05205 SM00388 His Kinase A (phosphoacceptor) domain AEA01_05260 SM00382 ATPases associated with a variety of cellular activities AEA01_05260 SM00448 cheY-homologous receiver domain AEA01_05265 SM00387 Histidine kinase-like ATPases AEA01_05265 SM00388 His Kinase A (phosphoacceptor) domain AEA01_05275 SM00881 CoA binding domain AEA01_05325 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA01_05325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA01_05330 SM00564 beta-propeller repeat AEA01_05395 SM00382 ATPases associated with a variety of cellular activities AEA01_05395 SM01086 C-terminal, D2-small domain, of ClpB protein AEA01_05460 SM00855 Phosphoglycerate mutase family AEA01_05470 SM00342 helix_turn_helix, arabinose operon control protein AEA01_05470 SM00871 Bacterial transcription activator, effector binding domain AEA01_05540 SM00382 ATPases associated with a variety of cellular activities AEA01_05585 SM00834 Putative regulatory protein AEA01_05625 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AEA01_05635 SM00860 SMI1 / KNR4 family AEA01_05640 SM00382 ATPases associated with a variety of cellular activities AEA01_05705 SM00091 PAS domain AEA01_05705 SM00911 HWE histidine kinase AEA01_05710 SM00448 cheY-homologous receiver domain AEA01_05750 SM00363 S4 RNA-binding domain AEA01_05760 SM00448 cheY-homologous receiver domain AEA01_05770 SM00341 Helicase and RNase D C-terminal AEA01_05770 SM00487 DEAD-like helicases superfamily AEA01_05770 SM00490 helicase superfamily c-terminal domain AEA01_05770 SM00956 AEA01_05770 AEA01_05780 SM00382 ATPases associated with a variety of cellular activities AEA01_05780 SM00487 DEAD-like helicases superfamily AEA01_05780 SM00490 helicase superfamily c-terminal domain AEA01_05780 SM00847 Helicase associated domain (HA2) Add an annotation AEA01_05825 SM00954 Region found in RelA / SpoT proteins AEA01_05850 SM00491 AEA01_05850 AEA01_05875 SM00448 cheY-homologous receiver domain AEA01_05880 SM00448 cheY-homologous receiver domain AEA01_05885 SM00260 Two component signalling adaptor domain AEA01_05890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA01_05895 SM00073 Histidine Phosphotransfer domain AEA01_05895 SM00260 Two component signalling adaptor domain AEA01_05895 SM00387 Histidine kinase-like ATPases AEA01_05895 SM00448 cheY-homologous receiver domain AEA01_05895 SM01231 AEA01_05895 AEA01_05925 SM00327 von Willebrand factor (vWF) type A domain AEA01_05975 SM00487 DEAD-like helicases superfamily AEA01_05985 SM01040 BRO family, N-terminal domain AEA01_06035 SM01149 AEA01_06035 AEA01_06040 SM00758 AEA01_06040 AEA01_06040 SM01217 AEA01_06040 AEA01_06055 SM00636 AEA01_06055 AEA01_06060 SM00812 Alpha-L-fucosidase AEA01_06105 SM00244 prohibitin homologues AEA01_06180 SM00116 Domain in cystathionine beta-synthase and other proteins. AEA01_06235 SM00867 YceI-like domain AEA01_06245 SM00867 YceI-like domain AEA01_06250 SM00387 Histidine kinase-like ATPases AEA01_06250 SM00388 His Kinase A (phosphoacceptor) domain AEA01_06250 SM00448 cheY-homologous receiver domain AEA01_06255 SM00387 Histidine kinase-like ATPases AEA01_06255 SM00388 His Kinase A (phosphoacceptor) domain AEA01_06255 SM00448 cheY-homologous receiver domain AEA01_06260 SM00387 Histidine kinase-like ATPases AEA01_06260 SM00388 His Kinase A (phosphoacceptor) domain AEA01_06260 SM00448 cheY-homologous receiver domain AEA01_06335 SM00422 helix_turn_helix, mercury resistance AEA01_06370 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AEA01_06410 SM00421 helix_turn_helix, Lux Regulon AEA01_06420 SM00656 AEA01_06420 AEA01_06445 SM00924 MgtE intracellular N domain AEA01_06490 SM00382 ATPases associated with a variety of cellular activities AEA01_06510 SM00116 Domain in cystathionine beta-synthase and other proteins. AEA01_06625 SM00671 Sel1-like repeats. AEA01_06630 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AEA01_06660 SM00382 ATPases associated with a variety of cellular activities AEA01_06675 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain AEA01_06705 SM00411 bacterial (prokaryotic) histone like domain AEA01_06720 SM00382 ATPases associated with a variety of cellular activities AEA01_06760 SM00732 Likely ribonuclease with RNase H fold. AEA01_06840 SM00267 diguanylate cyclase AEA01_06845 SM00829 Enoylreductase AEA01_06855 SM01092 CO dehydrogenase flavoprotein C-terminal domain AEA01_06860 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AEA01_06890 SM00248 ankyrin repeats AEA01_06935 SM00855 Phosphoglycerate mutase family AEA01_06955 SM00155 Phospholipase D. Active site motifs. AEA01_06960 SM00448 cheY-homologous receiver domain AEA01_06965 SM00138 Methyltransferase, chemotaxis proteins AEA01_06970 SM00052 Putative diguanylate phosphodiesterase AEA01_06970 SM00448 cheY-homologous receiver domain AEA01_06975 SM00260 Two component signalling adaptor domain AEA01_06980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA01_06980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA01_06985 SM00073 Histidine Phosphotransfer domain AEA01_06985 SM00260 Two component signalling adaptor domain AEA01_06985 SM00387 Histidine kinase-like ATPases AEA01_06985 SM01231 AEA01_06985 AEA01_06995 SM00487 DEAD-like helicases superfamily AEA01_06995 SM00490 helicase superfamily c-terminal domain AEA01_06995 SM00982 AEA01_06995 AEA01_06995 SM01058 CarD-like/TRCF domain AEA01_07010 SM00448 cheY-homologous receiver domain AEA01_07010 SM00862 Transcriptional regulatory protein, C terminal AEA01_07020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA01_07020 SM00387 Histidine kinase-like ATPases AEA01_07020 SM00388 His Kinase A (phosphoacceptor) domain AEA01_07105 SM00342 helix_turn_helix, arabinose operon control protein AEA01_07185 SM00347 helix_turn_helix multiple antibiotic resistance protein AEA01_07225 SM00342 helix_turn_helix, arabinose operon control protein AEA01_07225 SM00478 endonuclease III AEA01_07225 SM01009 AlkA N-terminal domain AEA01_07275 SM00487 DEAD-like helicases superfamily AEA01_07275 SM00490 helicase superfamily c-terminal domain AEA01_07280 SM00052 Putative diguanylate phosphodiesterase AEA01_07280 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA01_07280 SM00091 PAS domain AEA01_07280 SM00267 diguanylate cyclase AEA01_07285 SM00363 S4 RNA-binding domain AEA01_07320 SM00382 ATPases associated with a variety of cellular activities AEA01_07345 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AEA01_07435 SM00316 Ribosomal protein S1-like RNA-binding domain AEA01_07485 SM00977 TilS substrate C-terminal domain AEA01_07490 SM00098 Alkaline phosphatase homologues AEA01_07525 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA01_07525 SM00387 Histidine kinase-like ATPases AEA01_07525 SM00388 His Kinase A (phosphoacceptor) domain AEA01_07535 SM00382 ATPases associated with a variety of cellular activities AEA01_07535 SM00448 cheY-homologous receiver domain AEA01_07600 SM01160 AEA01_07600 AEA01_07660 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA01_07695 SM00257 Lysin motif AEA01_07735 SM00859 Semialdehyde dehydrogenase, NAD binding domain AEA01_07800 SM00052 Putative diguanylate phosphodiesterase AEA01_07800 SM00267 diguanylate cyclase AEA01_07800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA01_07820 SM00822 AEA01_07820 AEA01_07865 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AEA01_07870 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AEA01_07920 SM00316 Ribosomal protein S1-like RNA-binding domain AEA01_07920 SM00322 K homology RNA-binding domain AEA01_07940 SM01387 AEA01_07940 AEA01_07945 SM00316 Ribosomal protein S1-like RNA-binding domain AEA01_07945 SM00322 K homology RNA-binding domain AEA01_07965 SM01001 AIR carboxylase AEA01_08040 SM00487 DEAD-like helicases superfamily AEA01_08040 SM00490 helicase superfamily c-terminal domain AEA01_08100 SM00382 ATPases associated with a variety of cellular activities AEA01_08115 SM00642 Alpha-amylase domain AEA01_08150 SM00642 Alpha-amylase domain AEA01_08155 SM00354 helix_turn _helix lactose operon repressor AEA01_08160 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AEA01_08185 SM00873 B3/4 domain AEA01_08185 SM00874 tRNA synthetase B5 domain AEA01_08185 SM00896 Ferredoxin-fold anticodon binding domain AEA01_08190 SM00411 bacterial (prokaryotic) histone like domain AEA01_08195 SM00422 helix_turn_helix, mercury resistance AEA01_08280 SM00849 Metallo-beta-lactamase superfamily AEA01_08305 SM00861 Transketolase, pyrimidine binding domain AEA01_08310 SM00507 HNH nucleases AEA01_08340 SM00465 GIY-YIG type nucleases (URI domain) AEA01_08350 SM00091 PAS domain AEA01_08350 SM00387 Histidine kinase-like ATPases AEA01_08350 SM00388 His Kinase A (phosphoacceptor) domain AEA01_08350 SM00448 cheY-homologous receiver domain AEA01_08375 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA01_08375 SM00091 PAS domain AEA01_08375 SM00387 Histidine kinase-like ATPases AEA01_08375 SM00388 His Kinase A (phosphoacceptor) domain AEA01_08375 SM00448 cheY-homologous receiver domain AEA01_08390 SM00478 endonuclease III AEA01_08395 SM00382 ATPases associated with a variety of cellular activities AEA01_08395 SM00962 SRP54-type protein, GTPase domain AEA01_08395 SM00963 SRP54-type protein, helical bundle domain AEA01_08400 SM00342 helix_turn_helix, arabinose operon control protein AEA01_08425 SM01130 AEA01_08425 AEA01_08520 SM00387 Histidine kinase-like ATPases AEA01_08590 SM00344 helix_turn_helix ASNC type AEA01_08605 SM01323 AEA01_08605 AEA01_08650 SM00354 helix_turn _helix lactose operon repressor AEA01_08675 SM00342 helix_turn_helix, arabinose operon control protein AEA01_08690 SM00448 cheY-homologous receiver domain AEA01_08690 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AEA01_08695 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA01_08695 SM00091 PAS domain AEA01_08695 SM00387 Histidine kinase-like ATPases AEA01_08695 SM00388 His Kinase A (phosphoacceptor) domain AEA01_08695 SM00448 cheY-homologous receiver domain AEA01_08695 SM01079 AEA01_08695 AEA01_08745 SM00267 diguanylate cyclase AEA01_08745 SM00448 cheY-homologous receiver domain AEA01_08755 SM01230 AEA01_08755 AEA01_08765 SM01230 AEA01_08765 AEA01_08795 SM00382 ATPases associated with a variety of cellular activities AEA01_08830 SM00116 Domain in cystathionine beta-synthase and other proteins. AEA01_08830 SM01091 Transporter associated domain AEA01_08855 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA01_08910 SM00487 DEAD-like helicases superfamily AEA01_08910 SM00490 helicase superfamily c-terminal domain AEA01_08920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA01_08920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA01_08925 SM00260 Two component signalling adaptor domain AEA01_08930 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA01_08930 SM00267 diguanylate cyclase AEA01_08955 SM00528 Domain in histone-like proteins of HNS family AEA01_08970 SM00474 3'-5' exonuclease AEA01_09005 SM00646 AEA01_09005 AEA01_09010 SM00853 MutL C terminal dimerisation domain AEA01_09010 SM01340 AEA01_09010 AEA01_09030 SM00822 AEA01_09030 AEA01_09045 SM00052 Putative diguanylate phosphodiesterase AEA01_09045 SM00267 diguanylate cyclase AEA01_09055 SM01322 AEA01_09055 AEA01_09065 SM00357 Cold shock protein domain AEA01_09090 SM00487 DEAD-like helicases superfamily AEA01_09090 SM00490 helicase superfamily c-terminal domain AEA01_09095 SM00382 ATPases associated with a variety of cellular activities AEA01_09130 SM00052 Putative diguanylate phosphodiesterase AEA01_09130 SM00267 diguanylate cyclase AEA01_09130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA01_09140 SM00841 Elongation factor P, C-terminal AEA01_09140 SM01185 AEA01_09140 AEA01_09185 SM00849 Metallo-beta-lactamase superfamily AEA01_09220 SM01234 AEA01_09220 AEA01_09260 SM00840 AEA01_09260 AEA01_09300 SM00859 Semialdehyde dehydrogenase, NAD binding domain AEA01_09320 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AEA01_09330 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AEA01_09360 SM00382 ATPases associated with a variety of cellular activities AEA01_09365 SM00382 ATPases associated with a variety of cellular activities AEA01_09380 SM00028 Tetratricopeptide repeats AEA01_09420 SM00382 ATPases associated with a variety of cellular activities AEA01_09445 SM00363 S4 RNA-binding domain AEA01_09470 SM00354 helix_turn _helix lactose operon repressor AEA01_09545 SM00316 Ribosomal protein S1-like RNA-binding domain AEA01_09550 SM00411 bacterial (prokaryotic) histone like domain AEA01_09560 SM00028 Tetratricopeptide repeats AEA01_09570 SM00822 AEA01_09570 AEA01_09595 SM00116 Domain in cystathionine beta-synthase and other proteins. AEA01_09595 SM01240 AEA01_09595 AEA01_09620 SM00421 helix_turn_helix, Lux Regulon AEA01_09620 SM00448 cheY-homologous receiver domain AEA01_09625 SM00387 Histidine kinase-like ATPases AEA01_09630 SM00342 helix_turn_helix, arabinose operon control protein AEA01_09670 SM00529 Helix-turn-helix diphteria tox regulatory element AEA01_09680 SM00479 AEA01_09680 AEA01_09750 SM00316 Ribosomal protein S1-like RNA-binding domain AEA01_09750 SM00732 Likely ribonuclease with RNase H fold. AEA01_09755 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA01_09755 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA01_09755 SM00091 PAS domain AEA01_09755 SM00387 Histidine kinase-like ATPases AEA01_09755 SM00388 His Kinase A (phosphoacceptor) domain AEA01_09755 SM00448 cheY-homologous receiver domain AEA01_09760 SM00448 cheY-homologous receiver domain AEA01_09845 SM00382 ATPases associated with a variety of cellular activities AEA01_09895 SM00382 ATPases associated with a variety of cellular activities AEA01_09905 SM00849 Metallo-beta-lactamase superfamily AEA01_09920 SM00382 ATPases associated with a variety of cellular activities AEA01_09935 SM00226 Low molecular weight phosphatase family AEA01_09945 SM00465 GIY-YIG type nucleases (URI domain) AEA01_10065 SM00974 AEA01_10065 AEA01_10120 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA01_10130 SM00984 UDP binding domain AEA01_10150 SM00450 Rhodanese Homology Domain AEA01_10155 SM00421 helix_turn_helix, Lux Regulon AEA01_10155 SM00448 cheY-homologous receiver domain AEA01_10165 SM00316 Ribosomal protein S1-like RNA-binding domain AEA01_10170 SM00363 S4 RNA-binding domain AEA01_10280 SM01068 Putative carbohydrate binding domain AEA01_10285 SM00091 PAS domain AEA01_10285 SM00387 Histidine kinase-like ATPases AEA01_10290 SM00448 cheY-homologous receiver domain AEA01_10320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA01_10320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA01_10390 SM00318 Staphylococcal nuclease homologues AEA01_10410 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA01_10410 SM00387 Histidine kinase-like ATPases AEA01_10410 SM00388 His Kinase A (phosphoacceptor) domain AEA01_10440 SM00869 Autotransporter beta-domain AEA01_10450 SM00052 Putative diguanylate phosphodiesterase AEA01_10505 SM00858 AEA01_10505 AEA01_10520 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEA01_10545 SM00448 cheY-homologous receiver domain AEA01_10545 SM01012 AEA01_10545 AEA01_10565 SM00852 Probable molybdopterin binding domain AEA01_10620 SM00450 Rhodanese Homology Domain AEA01_10625 SM00852 Probable molybdopterin binding domain AEA01_10630 SM00382 ATPases associated with a variety of cellular activities AEA01_10635 SM00564 beta-propeller repeat AEA01_10650 SM00028 Tetratricopeptide repeats AEA01_10660 SM00562 AEA01_10660 AEA01_10685 SM00382 ATPases associated with a variety of cellular activities AEA01_10705 SM00382 ATPases associated with a variety of cellular activities AEA01_10705 SM00843 AEA01_10705 AEA01_10725 SM00316 Ribosomal protein S1-like RNA-binding domain AEA01_10730 SM00382 ATPases associated with a variety of cellular activities AEA01_10730 SM01086 C-terminal, D2-small domain, of ClpB protein AEA01_10755 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA01_10770 SM00052 Putative diguanylate phosphodiesterase AEA01_10770 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA01_10770 SM00091 PAS domain AEA01_10770 SM00267 diguanylate cyclase AEA01_10775 SM00091 PAS domain AEA01_10775 SM00387 Histidine kinase-like ATPases AEA01_10780 SM00052 Putative diguanylate phosphodiesterase AEA01_10780 SM00267 diguanylate cyclase AEA01_10780 SM00448 cheY-homologous receiver domain AEA01_10785 SM00387 Histidine kinase-like ATPases AEA01_10800 SM00858 AEA01_10800 AEA01_10805 SM00260 Two component signalling adaptor domain AEA01_10805 SM00448 cheY-homologous receiver domain AEA01_10850 SM00047 Lysozyme subfamily 2 AEA01_10890 SM00421 helix_turn_helix, Lux Regulon AEA01_10890 SM00448 cheY-homologous receiver domain AEA01_10900 SM00448 cheY-homologous receiver domain AEA01_10905 SM00382 ATPases associated with a variety of cellular activities AEA01_10955 SM00382 ATPases associated with a variety of cellular activities AEA01_11010 SM00267 diguanylate cyclase AEA01_11015 SM00267 diguanylate cyclase AEA01_11035 SM00382 ATPases associated with a variety of cellular activities AEA01_11035 SM00962 SRP54-type protein, GTPase domain AEA01_11050 SM00448 cheY-homologous receiver domain AEA01_11060 SM00073 Histidine Phosphotransfer domain AEA01_11060 SM00260 Two component signalling adaptor domain AEA01_11060 SM00387 Histidine kinase-like ATPases AEA01_11060 SM01231 AEA01_11060 AEA01_11120 SM00260 Two component signalling adaptor domain AEA01_11130 SM00448 cheY-homologous receiver domain AEA01_11135 SM00073 Histidine Phosphotransfer domain AEA01_11135 SM00260 Two component signalling adaptor domain AEA01_11135 SM00387 Histidine kinase-like ATPases AEA01_11135 SM01231 AEA01_11135 AEA01_11140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA01_11140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA01_11160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA01_11160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA01_11165 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA01_11165 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA01_11170 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA01_11170 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA01_11185 SM00260 Two component signalling adaptor domain AEA01_11195 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA01_11195 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEA01_11200 SM00138 Methyltransferase, chemotaxis proteins AEA01_11210 SM00448 cheY-homologous receiver domain AEA01_11215 SM00052 Putative diguanylate phosphodiesterase AEA01_11215 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA01_11215 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA01_11215 SM00091 PAS domain AEA01_11215 SM00267 diguanylate cyclase AEA01_11235 SM00966 SpoVT / AbrB like domain AEA01_11260 SM00073 Histidine Phosphotransfer domain AEA01_11260 SM00387 Histidine kinase-like ATPases AEA01_11260 SM00388 His Kinase A (phosphoacceptor) domain AEA01_11260 SM00448 cheY-homologous receiver domain AEA01_11270 SM00448 cheY-homologous receiver domain AEA01_11270 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AEA01_11280 SM00937 AEA01_11280 AEA01_11285 SM00850 LytTr DNA-binding domain AEA01_11325 SM00851 MGS-like domain AEA01_11325 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AEA01_11335 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AEA01_11370 SM00899 AEA01_11370 AEA01_11390 SM00841 Elongation factor P, C-terminal AEA01_11390 SM01185 AEA01_11390 AEA01_11440 SM01007 Class II Aldolase and Adducin N-terminal domain AEA01_11515 SM00100 Cyclic nucleotide-monophosphate binding domain AEA01_11515 SM00419 helix_turn_helix, cAMP Regulatory protein AEA01_11570 SM00912 haemagglutination activity domain AEA01_11695 SM00014 Acid phosphatase homologues AEA01_11705 SM00387 Histidine kinase-like ATPases AEA01_11710 SM00448 cheY-homologous receiver domain AEA01_11720 SM00052 Putative diguanylate phosphodiesterase AEA01_11720 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA01_11720 SM00267 diguanylate cyclase AEA01_11790 SM00646 AEA01_11790 AEA01_11830 SM00758 AEA01_11830 AEA01_11870 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AEA01_11895 SM01130 AEA01_11895 AEA01_11915 SM00670 Large family of predicted nucleotide-binding domains AEA01_11960 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA01_11960 SM00091 PAS domain AEA01_11960 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AEA01_11975 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AEA01_11985 SM00382 ATPases associated with a variety of cellular activities AEA01_12035 SM00382 ATPases associated with a variety of cellular activities AEA01_12045 SM01103 AEA01_12045 AEA01_12055 SM00257 Lysin motif AEA01_12075 SM00463 Small MutS-related domain AEA01_12100 SM01192 AEA01_12100 AEA01_12100 SM01193 AEA01_12100 AEA01_12125 SM00387 Histidine kinase-like ATPases AEA01_12125 SM00433 TopoisomeraseII AEA01_12155 SM01091 Transporter associated domain AEA01_12180 SM00382 ATPases associated with a variety of cellular activities AEA01_12190 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA01_12325 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA01_12325 SM00091 PAS domain AEA01_12325 SM00387 Histidine kinase-like ATPases AEA01_12325 SM00388 His Kinase A (phosphoacceptor) domain AEA01_12325 SM00448 cheY-homologous receiver domain AEA01_12330 SM00382 ATPases associated with a variety of cellular activities AEA01_12335 SM00448 cheY-homologous receiver domain AEA01_12340 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA01_12340 SM00091 PAS domain AEA01_12340 SM00387 Histidine kinase-like ATPases AEA01_12340 SM00388 His Kinase A (phosphoacceptor) domain AEA01_12340 SM00448 cheY-homologous receiver domain AEA01_12345 SM00477 DNA/RNA non-specific endonuclease AEA01_12345 SM00892 DNA/RNA non-specific endonuclease AEA01_12500 SM00830 Chorismate mutase type II AEA01_12520 SM00240 Forkhead associated domain AEA01_12540 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEA01_12540 SM00866 AEA01_12540 AEA01_12575 SM00564 beta-propeller repeat AEA01_12580 SM00434 DNA Topoisomerase IV AEA01_12600 SM00292 breast cancer carboxy-terminal domain AEA01_12600 SM00532 Ligase N family AEA01_12610 SM00771 ZipA, C-terminal domain (FtsZ-binding) AEA01_12670 SM00947 Carbonic anhydrase AEA01_12695 SM00479 AEA01_12695 AEA01_12725 SM00981 AEA01_12725 AEA01_12730 SM00382 ATPases associated with a variety of cellular activities AEA01_12755 SM00644 AEA01_12755 AEA01_12765 SM00450 Rhodanese Homology Domain AEA01_12790 SM00478 endonuclease III AEA01_12790 SM00525 AEA01_12790 AEA01_12800 SM00947 Carbonic anhydrase AEA01_12835 SM00382 ATPases associated with a variety of cellular activities AEA01_12850 SM00479 AEA01_12850 AEA01_12860 SM00967 RNA 2'-O ribose methyltransferase substrate binding AEA01_12870 SM00316 Ribosomal protein S1-like RNA-binding domain AEA01_12870 SM00357 Cold shock protein domain AEA01_12870 SM00955 AEA01_12870 AEA01_12905 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AEA01_12915 SM01018 B12 binding domain AEA01_12935 SM00354 helix_turn _helix lactose operon repressor AEA01_12960 SM00984 UDP binding domain AEA01_12975 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEA01_12980 SM00382 ATPases associated with a variety of cellular activities AEA01_13010 SM01091 Transporter associated domain AEA01_13020 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AEA01_13030 SM00861 Transketolase, pyrimidine binding domain AEA01_13055 SM00382 ATPases associated with a variety of cellular activities AEA01_13095 SM00271 DnaJ molecular chaperone homology domain AEA01_13190 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA01_13190 SM00267 diguanylate cyclase AEA01_13200 SM00267 diguanylate cyclase AEA01_13210 SM00822 AEA01_13210 AEA01_13305 SM00357 Cold shock protein domain AEA01_13320 SM00947 Carbonic anhydrase AEA01_13340 SM00382 ATPases associated with a variety of cellular activities AEA01_13360 SM00347 helix_turn_helix multiple antibiotic resistance protein AEA01_13390 SM00631 AEA01_13390 AEA01_13395 SM01217 AEA01_13395 AEA01_13430 SM00347 helix_turn_helix multiple antibiotic resistance protein AEA01_13435 SM00342 helix_turn_helix, arabinose operon control protein AEA01_13440 SM00434 DNA Topoisomerase IV AEA01_13465 SM00710 Parallel beta-helix repeats AEA01_13465 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AEA01_13470 SM01172 AEA01_13470 AEA01_13475 SM00671 Sel1-like repeats. AEA01_13500 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AEA01_13510 SM00972 Spore Coat Protein U domain AEA01_13525 SM00972 Spore Coat Protein U domain AEA01_13555 SM00267 diguanylate cyclase AEA01_13585 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AEA01_13625 SM00481 DNA polymerase alpha chain like domain AEA01_13945 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AEA01_13950 SM00869 Autotransporter beta-domain AEA01_13970 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA01_13970 SM00267 diguanylate cyclase AEA01_14000 SM00487 DEAD-like helicases superfamily AEA01_14000 SM00490 helicase superfamily c-terminal domain AEA01_14015 SM00357 Cold shock protein domain AEA01_14050 SM01118 AEA01_14050 AEA01_14065 SM00448 cheY-homologous receiver domain AEA01_14080 SM00358 Double-stranded RNA binding motif AEA01_14080 SM00535 Ribonuclease III family AEA01_14095 SM00838 Elongation factor G C-terminus AEA01_14100 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AEA01_14150 SM00530 Helix-turn-helix XRE-family like proteins AEA01_14190 SM00812 Alpha-L-fucosidase AEA01_14270 SM00382 ATPases associated with a variety of cellular activities AEA01_14415 SM01126 AEA01_14415 AEA01_14420 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AEA01_14420 SM00534 ATPase domain of DNA mismatch repair MUTS family AEA01_14485 SM00382 ATPases associated with a variety of cellular activities AEA01_14485 SM00962 SRP54-type protein, GTPase domain AEA01_14485 SM00963 SRP54-type protein, helical bundle domain AEA01_14500 SM00813 Alpha-L-arabinofuranosidase C-terminus AEA01_14520 SM00448 cheY-homologous receiver domain AEA01_14525 SM00387 Histidine kinase-like ATPases AEA01_14525 SM00388 His Kinase A (phosphoacceptor) domain AEA01_14530 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA01_14530 SM00387 Histidine kinase-like ATPases AEA01_14530 SM00388 His Kinase A (phosphoacceptor) domain AEA01_14530 SM00448 cheY-homologous receiver domain AEA01_14535 SM00138 Methyltransferase, chemotaxis proteins AEA01_14545 SM00387 Histidine kinase-like ATPases AEA01_14545 SM00388 His Kinase A (phosphoacceptor) domain AEA01_14545 SM00448 cheY-homologous receiver domain AEA01_14580 SM00387 Histidine kinase-like ATPases AEA01_14580 SM00388 His Kinase A (phosphoacceptor) domain AEA01_14580 SM00448 cheY-homologous receiver domain AEA01_14585 SM00387 Histidine kinase-like ATPases AEA01_14585 SM00388 His Kinase A (phosphoacceptor) domain AEA01_14625 SM00342 helix_turn_helix, arabinose operon control protein AEA01_14635 SM00862 Transcriptional regulatory protein, C terminal AEA01_14645 SM00382 ATPases associated with a variety of cellular activities AEA01_14695 SM00904 Riboflavin kinase AEA01_14795 SM00244 prohibitin homologues AEA01_14820 SM00478 endonuclease III AEA01_14845 SM00421 helix_turn_helix, Lux Regulon AEA01_14845 SM00448 cheY-homologous receiver domain AEA01_14880 SM00387 Histidine kinase-like ATPases AEA01_14880 SM00388 His Kinase A (phosphoacceptor) domain AEA01_14885 SM00448 cheY-homologous receiver domain AEA01_14885 SM00862 Transcriptional regulatory protein, C terminal AEA01_14950 SM01060 AEA01_14950 AEA01_14960 SM00091 PAS domain AEA01_14960 SM00342 helix_turn_helix, arabinose operon control protein AEA01_14995 SM00481 DNA polymerase alpha chain like domain AEA01_15025 SM00974 AEA01_15025 AEA01_15040 SM01092 CO dehydrogenase flavoprotein C-terminal domain AEA01_15045 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AEA01_15050 SM01217 AEA01_15050 AEA01_15065 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AEA01_15070 SM00052 Putative diguanylate phosphodiesterase AEA01_15130 SM00855 Phosphoglycerate mutase family AEA01_15160 SM00487 DEAD-like helicases superfamily AEA01_15230 SM00788 Adenylosuccinate synthetase AEA01_15240 SM00244 prohibitin homologues AEA01_15245 SM00244 prohibitin homologues AEA01_15250 SM00448 cheY-homologous receiver domain AEA01_15255 SM00271 DnaJ molecular chaperone homology domain AEA01_15295 SM01321 AEA01_15295 AEA01_15300 SM01359 AEA01_15300 AEA01_15300 SM01360 AEA01_15300 AEA01_15345 SM00382 ATPases associated with a variety of cellular activities AEA01_15360 SM00910 AEA01_15360 AEA01_15395 SM00825 Beta-ketoacyl synthase AEA01_15405 SM00822 AEA01_15405 AEA01_15410 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AEA01_15455 SM00382 ATPases associated with a variety of cellular activities AEA01_15465 SM00460 Transglutaminase/protease-like homologues AEA01_15480 SM00493 AEA01_15480 AEA01_15490 SM00382 ATPases associated with a variety of cellular activities AEA01_15520 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA01_15525 SM00849 Metallo-beta-lactamase superfamily AEA01_15550 SM00331 Sigma factor PP2C-like phosphatases AEA01_15550 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AEA01_15555 SM00479 AEA01_15555 AEA01_15570 SM00849 Metallo-beta-lactamase superfamily AEA01_15575 SM00257 Lysin motif AEA01_15605 SM00411 bacterial (prokaryotic) histone like domain AEA01_15610 SM00382 ATPases associated with a variety of cellular activities AEA01_15610 SM00464 Found in ATP-dependent protease La (LON) AEA01_15615 SM00382 ATPases associated with a variety of cellular activities AEA01_15615 SM00994 ClpX C4-type zinc finger AEA01_15615 SM01086 C-terminal, D2-small domain, of ClpB protein AEA01_15660 SM01329 AEA01_15660 AEA01_15680 SM00448 cheY-homologous receiver domain AEA01_15680 SM00862 Transcriptional regulatory protein, C terminal AEA01_15685 SM00091 PAS domain AEA01_15685 SM00387 Histidine kinase-like ATPases AEA01_15685 SM00388 His Kinase A (phosphoacceptor) domain AEA01_15705 SM00014 Acid phosphatase homologues AEA01_15760 SM00855 Phosphoglycerate mutase family AEA01_15775 SM00829 Enoylreductase AEA01_15785 SM00382 ATPases associated with a variety of cellular activities AEA01_15815 SM00363 S4 RNA-binding domain AEA01_15830 SM00829 Enoylreductase AEA01_15875 SM00838 Elongation factor G C-terminus AEA01_15910 SM00662 RNA polymerases D AEA01_15915 SM00363 S4 RNA-binding domain AEA01_15915 SM01390 AEA01_15915 AEA01_15975 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AEA01_15980 SM01374 AEA01_15980 AEA01_16000 SM00322 K homology RNA-binding domain AEA01_16015 SM01382 AEA01_16015 AEA01_16015 SM01383 AEA01_16015 AEA01_16035 SM01403 AEA01_16035 AEA01_16045 SM00838 Elongation factor G C-terminus AEA01_16045 SM00889 Elongation factor G, domain IV AEA01_16060 SM00663 RNA polymerase I subunit A N-terminus AEA01_16085 SM00649 Ribosomal protein L11/L12 AEA01_16090 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AEA01_16090 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AEA01_16140 SM01400 AEA01_16140 AEA01_16160 SM00028 Tetratricopeptide repeats AEA01_16170 SM00937 AEA01_16170 AEA01_16175 SM00028 Tetratricopeptide repeats AEA01_16180 SM00852 Probable molybdopterin binding domain AEA01_16310 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AEA01_16310 SM00475 5'-3' exonuclease AEA01_16375 SM00421 helix_turn_helix, Lux Regulon AEA01_16380 SM00387 Histidine kinase-like ATPases AEA01_16380 SM00388 His Kinase A (phosphoacceptor) domain AEA01_16380 SM00448 cheY-homologous receiver domain AEA01_16385 SM00448 cheY-homologous receiver domain AEA01_16405 SM00342 helix_turn_helix, arabinose operon control protein AEA01_16455 SM00347 helix_turn_helix multiple antibiotic resistance protein AEA01_16490 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEA01_16490 SM00895 AEA01_16490 AEA01_16550 SM00650 Ribosomal RNA adenine dimethylases AEA01_16605 SM00387 Histidine kinase-like ATPases AEA01_16605 SM00388 His Kinase A (phosphoacceptor) domain AEA01_16610 SM00448 cheY-homologous receiver domain AEA01_16610 SM00862 Transcriptional regulatory protein, C terminal AEA01_16620 SM00382 ATPases associated with a variety of cellular activities AEA01_16640 SM00382 ATPases associated with a variety of cellular activities AEA01_16750 SM00996 S-adenosyl-L-homocysteine hydrolase AEA01_16750 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AEA01_16775 SM00642 Alpha-amylase domain AEA01_16805 SM00829 Enoylreductase AEA01_16845 SM00957 SecA DEAD-like domain AEA01_16845 SM00958 SecA preprotein cross-linking domain AEA01_16865 SM00864 Tubulin/FtsZ family, GTPase domain AEA01_16865 SM00865 Tubulin/FtsZ family, C-terminal domain AEA01_16870 SM00842 Cell division protein FtsA AEA01_16980 SM00448 cheY-homologous receiver domain AEA01_16980 SM00862 Transcriptional regulatory protein, C terminal AEA01_16985 SM00387 Histidine kinase-like ATPases AEA01_16985 SM00388 His Kinase A (phosphoacceptor) domain AEA01_17010 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AEA01_17070 SM00382 ATPases associated with a variety of cellular activities AEA01_17145 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEA01_17145 SM00866 AEA01_17145 AEA01_17205 SM00382 ATPases associated with a variety of cellular activities AEA01_17225 SM01211 AEA01_17225 AEA01_17275 SM00656 AEA01_17275 AEA01_17280 SM00656 AEA01_17280 AEA01_17310 SM00528 Domain in histone-like proteins of HNS family AEA01_17325 SM00382 ATPases associated with a variety of cellular activities AEA01_17355 SM00882 Coenzyme A transferase AEA01_17360 SM00882 Coenzyme A transferase AEA01_17395 SM00893 Electron transfer flavoprotein domain AEA01_17400 SM00893 Electron transfer flavoprotein domain AEA01_17465 SM00116 Domain in cystathionine beta-synthase and other proteins. AEA01_17500 SM00487 DEAD-like helicases superfamily AEA01_17500 SM00490 helicase superfamily c-terminal domain AEA01_17520 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA01_17545 SM00825 Beta-ketoacyl synthase AEA01_17610 SM00382 ATPases associated with a variety of cellular activities AEA01_17630 SM00382 ATPases associated with a variety of cellular activities AEA01_17630 SM00448 cheY-homologous receiver domain AEA01_17650 SM00710 Parallel beta-helix repeats AEA01_17665 SM00830 Chorismate mutase type II AEA01_17675 SM00382 ATPases associated with a variety of cellular activities AEA01_17745 SM00986 Uracil DNA glycosylase superfamily AEA01_17745 SM00987 UreE urease accessory protein, C-terminal domain AEA01_17785 SM00382 ATPases associated with a variety of cellular activities AEA01_17785 SM00930 AEA01_17785 AEA01_17850 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEA01_17850 SM00091 PAS domain AEA01_17850 SM00387 Histidine kinase-like ATPases AEA01_17850 SM00388 His Kinase A (phosphoacceptor) domain AEA01_17850 SM00448 cheY-homologous receiver domain AEA01_17870 SM01005 Alanine racemase, C-terminal domain AEA01_17880 SM00344 helix_turn_helix ASNC type AEA01_17935 SM00382 ATPases associated with a variety of cellular activities AEA01_17950 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AEA01_17955 SM00986 Uracil DNA glycosylase superfamily AEA01_17955 SM00987 UreE urease accessory protein, C-terminal domain AEA01_17960 SM00729 Elongator protein 3, MiaB family, Radical SAM AEA01_18015 SM00448 cheY-homologous receiver domain AEA01_18015 SM00850 LytTr DNA-binding domain AEA01_18020 SM00387 Histidine kinase-like ATPases AEA01_18065 SM00091 PAS domain AEA01_18065 SM00138 Methyltransferase, chemotaxis proteins AEA01_18065 SM00911 HWE histidine kinase AEA01_18070 SM00448 cheY-homologous receiver domain AEA01_18080 SM00382 ATPases associated with a variety of cellular activities AEA01_18080 SM00448 cheY-homologous receiver domain AEA01_18135 SM00382 ATPases associated with a variety of cellular activities AEA01_18175 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AEA01_18215 SM00382 ATPases associated with a variety of cellular activities AEA01_18220 SM00631 AEA01_18220 AEA01_18235 SM00822 AEA01_18235 AEA01_18275 SM00267 diguanylate cyclase AEA01_18280 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA01_18380 SM00257 Lysin motif AEA01_18405 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AEA01_18405 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AEA01_18405 SM00493 AEA01_18405 AEA01_18425 SM00091 PAS domain AEA01_18425 SM00267 diguanylate cyclase AEA01_18460 SM00487 DEAD-like helicases superfamily AEA01_18460 SM00490 helicase superfamily c-terminal domain AEA01_18495 SM00986 Uracil DNA glycosylase superfamily AEA01_18495 SM00987 UreE urease accessory protein, C-terminal domain AEA01_18500 SM00448 cheY-homologous receiver domain AEA01_18510 SM00382 ATPases associated with a variety of cellular activities AEA01_18515 SM00487 DEAD-like helicases superfamily AEA01_18515 SM00490 helicase superfamily c-terminal domain AEA01_18525 SM00357 Cold shock protein domain AEA01_18525 SM00382 ATPases associated with a variety of cellular activities AEA01_18525 SM00959 Rho termination factor, N-terminal domain AEA01_18560 SM00257 Lysin motif AEA01_18610 SM01150 AEA01_18610 AEA01_18670 SM00644 AEA01_18670 AEA01_18680 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AEA01_18715 SM01217 AEA01_18715 AEA01_18720 SM00905 Dihydroneopterin aldolase AEA01_18745 SM00400 zinc finger AEA01_18745 SM00493 AEA01_18745 AEA01_18745 SM00766 DNA primase DnaG DnaB-binding AEA01_18905 SM00363 S4 RNA-binding domain AEA01_18950 SM00470 ParB-like nuclease domain AEA01_18975 SM01259 AEA01_18975 AEA01_19005 SM00836 DALR anticodon binding domain AEA01_19005 SM01016 Arginyl tRNA synthetase N terminal dom AEA01_19040 SM00823 Phosphopantetheine attachment site AEA01_19040 SM00824 Thioesterase AEA01_19065 SM00938 Nitrogen regulatory protein P-II AEA01_19075 SM00382 ATPases associated with a variety of cellular activities AEA01_19090 SM00052 Putative diguanylate phosphodiesterase AEA01_19110 SM00986 Uracil DNA glycosylase superfamily AEA01_19110 SM00987 UreE urease accessory protein, C-terminal domain AEA01_19120 SM00244 prohibitin homologues AEA01_19180 SM00448 cheY-homologous receiver domain AEA01_19180 SM00862 Transcriptional regulatory protein, C terminal AEA01_19185 SM00387 Histidine kinase-like ATPases AEA01_19185 SM00388 His Kinase A (phosphoacceptor) domain AEA01_19205 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AEA01_19240 SM01060 AEA01_19240 AEA01_19260 SM00421 helix_turn_helix, Lux Regulon AEA01_19260 SM00448 cheY-homologous receiver domain AEA01_19275 SM00382 ATPases associated with a variety of cellular activities AEA01_19325 SM00849 Metallo-beta-lactamase superfamily AEA01_19355 SM00960 Roadblock/LC7 domain AEA01_19380 SM00342 helix_turn_helix, arabinose operon control protein AEA01_19435 SM00387 Histidine kinase-like ATPases AEA01_19435 SM00388 His Kinase A (phosphoacceptor) domain AEA01_19440 SM00448 cheY-homologous receiver domain AEA01_19440 SM00862 Transcriptional regulatory protein, C terminal AEA01_19465 SM00248 ankyrin repeats AEA01_19470 SM01060 AEA01_19470 AEA01_19475 SM00491 AEA01_19475 AEA01_19505 SM01004 Delta-aminolevulinic acid dehydratase AEA01_19545 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AEA01_19565 SM00382 ATPases associated with a variety of cellular activities AEA01_19575 SM00530 Helix-turn-helix XRE-family like proteins AEA01_19605 SM00382 ATPases associated with a variety of cellular activities AEA01_19660 SM00881 CoA binding domain AEA01_19665 SM00116 Domain in cystathionine beta-synthase and other proteins. AEA01_19665 SM00924 MgtE intracellular N domain AEA01_19670 SM01057 Eukaryotic-type carbonic anhydrase AEA01_19690 SM00226 Low molecular weight phosphatase family AEA01_19695 SM00248 ankyrin repeats AEA01_19705 SM00825 Beta-ketoacyl synthase AEA01_19730 SM00822 AEA01_19730 AEA01_19765 SM00563 Phosphate acyltransferases AEA01_19815 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AEA01_19815 SM00474 3'-5' exonuclease AEA01_19815 SM00475 5'-3' exonuclease AEA01_19815 SM00482 DNA polymerase A domain AEA01_19840 SM01266 AEA01_19840 AEA01_19860 SM00155 Phospholipase D. Active site motifs. AEA01_19970 SM00248 ankyrin repeats AEA01_19975 SM00248 ankyrin repeats AEA01_20030 SM00421 helix_turn_helix, Lux Regulon AEA01_20030 SM00448 cheY-homologous receiver domain AEA01_20075 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AEA01_20090 SM00346 helix_turn_helix isocitrate lyase regulation AEA01_20095 SM00342 helix_turn_helix, arabinose operon control protein AEA01_20110 SM00091 PAS domain AEA01_20110 SM00387 Histidine kinase-like ATPases AEA01_20110 SM00388 His Kinase A (phosphoacceptor) domain AEA01_20110 SM00448 cheY-homologous receiver domain AEA01_20130 SM00564 beta-propeller repeat AEA01_20160 SM00836 DALR anticodon binding domain AEA01_20170 SM00382 ATPases associated with a variety of cellular activities AEA01_20245 SM00354 helix_turn _helix lactose operon repressor AEA01_20270 SM00758 AEA01_20270 AEA01_20270 SM01217 AEA01_20270 AEA01_20310 SM00612 AEA01_20310 AEA01_20325 SM00633 Glycosyl hydrolase family 10 AEA01_20340 SM00633 Glycosyl hydrolase family 10 AEA01_20385 SM00829 Enoylreductase AEA01_20400 SM00354 helix_turn _helix lactose operon repressor AEA01_20420 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AEA01_20465 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA01_20465 SM00388 His Kinase A (phosphoacceptor) domain AEA01_20480 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AEA01_20480 SM01232 AEA01_20480 AEA01_20515 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA01_20515 SM00091 PAS domain AEA01_20580 SM00347 helix_turn_helix multiple antibiotic resistance protein AEA01_20625 SM00155 Phospholipase D. Active site motifs. AEA01_20675 SM00369 Leucine-rich repeats, typical (most populated) subfamily AEA01_20695 SM00530 Helix-turn-helix XRE-family like proteins AEA01_20740 SM00530 Helix-turn-helix XRE-family like proteins AEA01_20760 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AEA01_20760 SM00736 Dystroglycan-type cadherin-like domains. AEA01_20760 SM00869 Autotransporter beta-domain AEA01_20790 SM00382 ATPases associated with a variety of cellular activities AEA01_20835 SM00829 Enoylreductase AEA01_20875 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AEA01_20875 SM00091 PAS domain AEA01_20875 SM00267 diguanylate cyclase AEA01_20940 SM00014 Acid phosphatase homologues AEA01_20955 SM00028 Tetratricopeptide repeats