locus-tag	class	description
Xcc3_00040	COG0187	DNA topoisomerase II activity
Xcc3_00050	COG0187	DNA topoisomerase II activity
Xcc3_00070	COG0501	Belongs to the peptidase M48B family
Xcc3_00150	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Xcc3_00210	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
Xcc3_00220	COG0793	Belongs to the peptidase S41A family
Xcc3_00230	COG4942	peptidase
Xcc3_00250	COG2234	aminopeptidase activity
Xcc3_00280	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
Xcc3_00290	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
Xcc3_00310	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
Xcc3_00320	COG1064	alcohol dehydrogenase
Xcc3_00350	COG0493	'glutamate synthase
Xcc3_00360	COG0069	glutamate synthase activity
Xcc3_00360	COG0067	glutamate synthase
Xcc3_00360	COG0070	glutamate synthase
Xcc3_00390	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
Xcc3_00410	COG1741	Belongs to the pirin family
Xcc3_00420	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
Xcc3_00430	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
Xcc3_00470	COG0583	DNA-binding transcription factor activity
Xcc3_00580	COG1111	helicase
Xcc3_00580	COG1205	dead DEAH box helicase
Xcc3_00590	COG3177	Filamentation induced by cAMP protein fic
Xcc3_00600	COG2963	transposase activity
Xcc3_00630	COG1272	protein, Hemolysin III
Xcc3_00750	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
Xcc3_00760	COG3237	CsbD-like
Xcc3_00850	COG0628	permease
Xcc3_00880	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
Xcc3_00890	COG0477	Major facilitator Superfamily
Xcc3_00970	COG0714	Associated with various cellular activities
Xcc3_01050	COG4772	TonB-dependent receptor
Xcc3_01070	COG1012	belongs to the aldehyde dehydrogenase family
Xcc3_01200	COG3710	Transcriptional regulator
Xcc3_01240	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Xcc3_01380	COG2963	transposase activity
Xcc3_01410	COG2963	transposase activity
Xcc3_01420	COG2801	Transposase and inactivated derivatives
Xcc3_01470	COG0366	Alpha amylase catalytic
Xcc3_01480	COG0366	Alpha amylase catalytic
Xcc3_01550	COG2755	lipolytic protein G-D-S-L family
Xcc3_01570	COG0657	acetylesterase activity
Xcc3_01570	COG2755	lipolytic protein G-D-S-L family
Xcc3_01590	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
Xcc3_01620	COG3507	Belongs to the glycosyl hydrolase 43 family
Xcc3_01630	COG1609	Transcriptional regulator
Xcc3_01660	COG1028	Short-chain dehydrogenase reductase Sdr
Xcc3_01680	COG2755	lipolytic protein G-D-S-L family
Xcc3_01700	COG3186	Phenylalanine-4-hydroxylase
Xcc3_01710	COG1522	sequence-specific DNA binding
Xcc3_01750	COG1752	Esterase of the alpha-beta hydrolase superfamily
Xcc3_01780	COG1119	ATPase activity
Xcc3_01810	COG1125	glycine betaine transport
Xcc3_01810	COG0517	IMP dehydrogenase activity
Xcc3_01840	COG1262	PFAM Formylglycine-generating sulfatase enzyme
Xcc3_01850	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
Xcc3_01910	COG0489	protein tyrosine kinase activity
Xcc3_01920	COG0588	phosphoglycerate mutase activity
Xcc3_01940	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Xcc3_01990	COG1881	PFAM PEBP family protein
Xcc3_02020	COG0174	glutamine synthetase
Xcc3_02030	COG0347	Belongs to the P(II) protein family
Xcc3_02040	COG0004	ammonium transporteR
Xcc3_02050	COG0004	ammonium transporteR
Xcc3_02060	COG3852	Histidine kinase
Xcc3_02070	COG2204	response regulator
Xcc3_02100	COG2032	superoxide dismutase activity
Xcc3_02110	COG2032	superoxide dismutase activity
Xcc3_02120	COG0346	lactoylglutathione lyase activity
Xcc3_02140	COG0183	Belongs to the thiolase family
Xcc3_02220	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
Xcc3_02260	COG0028	Belongs to the TPP enzyme family
Xcc3_02270	COG4191	Histidine kinase
Xcc3_02280	COG2204	response regulator
Xcc3_02330	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
Xcc3_02360	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
Xcc3_02370	COG3177	Filamentation induced by cAMP protein fic
Xcc3_02380	COG0596	Alpha beta hydrolase
Xcc3_02400	COG0318	PFAM AMP-dependent synthetase and ligase
Xcc3_02410	COG0745	RESPONSE REGULATOR receiver
Xcc3_02440	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
Xcc3_02470	COG1181	Belongs to the D-alanine--D-alanine ligase family
Xcc3_02500	COG0564	pseudouridine synthase activity
Xcc3_02550	COG0339	signal peptide processing
Xcc3_02630	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
Xcc3_02640	COG2224	Isocitrate lyase
Xcc3_02650	COG3706	GGDEF domain
Xcc3_02720	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
Xcc3_02730	COG1960	acyl-CoA dehydrogenase activity
Xcc3_02870	COG0697	spore germination
Xcc3_02890	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
Xcc3_02910	COG1846	Transcriptional regulator
Xcc3_02920	COG1764	response to oxidative stress
Xcc3_02970	COG0656	L-ascorbic acid biosynthetic process
Xcc3_02980	COG2130	NADP-dependent
Xcc3_03010	COG1187	pseudouridine synthase activity
Xcc3_03030	COG1643	Atp-dependent helicase
Xcc3_03040	COG0840	transmembrane signaling receptor activity
Xcc3_03050	COG4807	Protein conserved in bacteria
Xcc3_03060	COG2351	hydroxyisourate hydrolase activity
Xcc3_03070	COG2072	flavoprotein involved in K transport
Xcc3_03110	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
Xcc3_03170	COG3568	Endonuclease Exonuclease Phosphatase
Xcc3_03180	COG3568	Endonuclease Exonuclease Phosphatase
Xcc3_03190	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Xcc3_03230	COG1957	nucleoside hydrolase
Xcc3_03250	COG2252	PERMEase
Xcc3_03290	COG0084	hydrolase, TatD family'
Xcc3_03320	COG0583	DNA-binding transcription factor activity
Xcc3_03330	COG2814	Major facilitator Superfamily
Xcc3_03380	COG1902	pentaerythritol trinitrate reductase activity
Xcc3_03430	COG0300	oxidoreductase activity
Xcc3_03450	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
Xcc3_03460	COG0583	DNA-binding transcription factor activity
Xcc3_03490	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
Xcc3_03520	COG0702	epimerase
Xcc3_03530	COG1733	regulation of RNA biosynthetic process
Xcc3_03550	COG0840	transmembrane signaling receptor activity
Xcc3_03750	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
Xcc3_03880	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
Xcc3_03930	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
Xcc3_03940	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
Xcc3_03960	COG3485	protocatechuate 3,4-dioxygenase
Xcc3_03970	COG3485	protocatechuate 3,4-dioxygenase
Xcc3_03990	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
Xcc3_04000	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
Xcc3_04020	COG1414	Transcriptional regulator
Xcc3_04080	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
Xcc3_04180	COG1040	competence protein
Xcc3_04200	COG0582	viral genome integration into host DNA
Xcc3_04220	COG4774	siderophore transport
Xcc3_04240	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
Xcc3_04260	COG4206	TonB-dependent receptor
Xcc3_04280	COG2963	transposase activity
Xcc3_04290	COG2801	Transposase and inactivated derivatives
Xcc3_04310	COG1511	domain protein
Xcc3_04310	COG3264	Mechanosensitive ion channel
Xcc3_04340	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
Xcc3_04350	COG2354	Protein conserved in bacteria
Xcc3_04380	COG0297	glycogen (starch) synthase activity
Xcc3_04400	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
Xcc3_04450	COG0702	epimerase
Xcc3_04460	COG1028	Short-chain dehydrogenase reductase Sdr
Xcc3_04520	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Xcc3_04530	COG1028	Short-chain dehydrogenase reductase Sdr
Xcc3_04550	COG0513	Belongs to the DEAD box helicase family
Xcc3_04560	COG3039	Transposase
Xcc3_04570	COG0508	dehydrogenase complex catalyzes the overall conversion of
Xcc3_04600	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
Xcc3_04630	COG3104	oligopeptide transport
Xcc3_04710	COG1320	monovalent cation:proton antiporter activity
Xcc3_04720	COG2212	antiporter activity
Xcc3_04750	COG0651	ATP synthesis coupled electron transport
Xcc3_04760	COG1006	Multisubunit Na H antiporter MnhC subunit
Xcc3_04770	COG2111	Na H antiporter
Xcc3_04770	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
Xcc3_04920	COG0436	Aminotransferase
Xcc3_04950	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
Xcc3_05010	COG2076	Multidrug Resistance protein
Xcc3_05030	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
Xcc3_05150	COG2816	NAD+ diphosphatase activity
Xcc3_05160	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
Xcc3_05210	COG2814	Major facilitator Superfamily
Xcc3_05220	COG1289	transmembrane transporter activity
Xcc3_05230	COG0151	Belongs to the GarS family
Xcc3_05260	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
Xcc3_05270	COG2267	carboxylic ester hydrolase activity
Xcc3_05280	COG2453	phosphatase
Xcc3_05280	COG0671	phosphoesterase, PA-phosphatase related
Xcc3_05330	COG4589	Belongs to the CDS family
Xcc3_05350	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
Xcc3_05420	COG0439	Biotin carboxylase
Xcc3_05440	COG0511	ligase activity, forming carbon-carbon bonds
Xcc3_05470	COG1324	tolerance protein
Xcc3_05490	COG2356	endonuclease I
Xcc3_05500	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
Xcc3_05520	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
Xcc3_05550	COG3039	Transposase
Xcc3_05560	COG1196	nuclear chromosome segregation
Xcc3_05640	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
Xcc3_05660	COG2963	transposase activity
Xcc3_05720	COG3386	PFAM SMP-30 Gluconolaconase
Xcc3_05750	COG3712	iron ion homeostasis
Xcc3_05840	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
Xcc3_05880	COG0778	Nitroreductase
Xcc3_05890	COG2353	YceI-like domain
Xcc3_05970	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
Xcc3_06000	COG1802	Transcriptional regulator
Xcc3_06100	COG2963	transposase activity
Xcc3_06110	COG2801	Transposase and inactivated derivatives
Xcc3_06240	COG0435	Glutathione S-transferase
Xcc3_06360	COG2409	Drug exporters of the RND superfamily
Xcc3_06380	COG1506	peptidase
Xcc3_06380	COG0823	Involved in the tonB-independent uptake of proteins
Xcc3_06400	COG3706	GGDEF domain
Xcc3_06410	COG1959	2 iron, 2 sulfur cluster binding
Xcc3_06490	COG0697	spore germination
Xcc3_06520	COG4305	rare lipoprotein A
Xcc3_06530	COG5297	Belongs to the glycosyl hydrolase family 6
Xcc3_06540	COG1113	amino acid transport
Xcc3_06550	COG0598	Magnesium transport protein CorA
Xcc3_06660	COG5001	Diguanylate cyclase
Xcc3_06660	COG5002	protein histidine kinase activity
Xcc3_06660	COG3447	MASE1 domain protein
Xcc3_06670	COG0840	transmembrane signaling receptor activity
Xcc3_06690	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
Xcc3_06690	COG5297	Belongs to the glycosyl hydrolase family 6
Xcc3_06700	COG0659	secondary active sulfate transmembrane transporter activity
Xcc3_06710	COG3706	GGDEF domain
Xcc3_06740	COG0471	metal ion transport
Xcc3_06740	COG3273	potassium ion transport
Xcc3_06770	COG3275	phosphorelay sensor kinase activity
Xcc3_06840	COG1505	serine-type exopeptidase activity
Xcc3_06900	COG2832	Protein of unknown function (DUF454)
Xcc3_06950	COG2963	transposase activity
Xcc3_07050	COG2226	methyltransferase
Xcc3_07060	COG3300	MHYT domain
Xcc3_07060	COG5001	Diguanylate cyclase
Xcc3_07070	COG0308	aminopeptidase N
Xcc3_07150	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
Xcc3_07190	COG3284	Transcriptional regulator
Xcc3_07210	COG1077	Cell shape determining protein MreB Mrl
Xcc3_07220	COG1792	Involved in formation and maintenance of cell shape
Xcc3_07250	COG0772	Belongs to the SEDS family
Xcc3_07280	COG2963	transposase activity
Xcc3_07350	COG2951	lytic endotransglycosylase activity
Xcc3_07360	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
Xcc3_07370	COG1686	Belongs to the peptidase S11 family
Xcc3_07390	COG2921	Belongs to the UPF0250 family
Xcc3_07460	COG1056	cytidyltransferase-related domain
Xcc3_07460	COG1051	belongs to the nudix hydrolase family
Xcc3_07530	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
Xcc3_07540	COG0673	inositol 2-dehydrogenase activity
Xcc3_07550	COG2823	Periplasmic or secreted lipoprotein
Xcc3_07560	COG4251	negative regulation of phosphorylation
Xcc3_07570	COG0784	Response regulator, receiver
Xcc3_07580	COG4191	Histidine kinase
Xcc3_07590	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Xcc3_07600	COG1028	Short-chain dehydrogenase reductase Sdr
Xcc3_07690	COG1459	type II secretion system
Xcc3_07730	COG4795	General secretion pathway protein
Xcc3_07780	COG2188	Transcriptional regulator
Xcc3_07800	COG1609	Transcriptional regulator
Xcc3_07810	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
Xcc3_07820	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
Xcc3_07920	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
Xcc3_07940	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
Xcc3_07990	COG2205	protein histidine kinase activity
Xcc3_08000	COG0745	RESPONSE REGULATOR receiver
Xcc3_08050	COG0583	DNA-binding transcription factor activity
Xcc3_08090	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
Xcc3_08100	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Xcc3_08120	COG0697	spore germination
Xcc3_08140	COG1307	EDD domain protein, DegV family
Xcc3_08230	COG0402	S-adenosylhomocysteine deaminase activity
Xcc3_08270	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
Xcc3_08310	COG0436	Aminotransferase
Xcc3_08370	COG2211	Major facilitator Superfamily
Xcc3_08380	COG1609	Transcriptional regulator
Xcc3_08390	COG1028	Short-chain dehydrogenase reductase Sdr
Xcc3_08400	COG2851	Citrate transporter
Xcc3_08440	COG0642	Histidine kinase
Xcc3_08450	COG1840	ABC-type Fe3 transport system, periplasmic component
Xcc3_08460	COG2197	response regulator
Xcc3_08470	COG4191	Histidine kinase
Xcc3_08560	COG1560	Kdo2-lipid A biosynthetic process
Xcc3_08570	COG1519	Transferase
Xcc3_08580	COG1538	Outer membrane efflux protein
Xcc3_08590	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
Xcc3_08620	COG3300	MHYT domain
Xcc3_08620	COG5001	Diguanylate cyclase
Xcc3_08660	COG2226	methyltransferase
Xcc3_08730	COG0405	Gamma-glutamyltransferase
Xcc3_08740	COG0840	transmembrane signaling receptor activity
Xcc3_08750	COG0823	Involved in the tonB-independent uptake of proteins
Xcc3_08750	COG1506	peptidase
Xcc3_08750	COG4946	Tricorn protease homolog
Xcc3_08770	COG3710	Transcriptional regulator
Xcc3_08830	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
Xcc3_08850	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
Xcc3_08910	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
Xcc3_08930	COG3781	membrane
Xcc3_08940	COG0671	phosphoesterase, PA-phosphatase related
Xcc3_08960	COG1028	Short-chain dehydrogenase reductase Sdr
Xcc3_08980	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Xcc3_08990	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
Xcc3_09060	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Xcc3_09130	COG1773	rubredoxin
Xcc3_09140	COG2912	Transglutaminase-like superfamily
Xcc3_09180	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
Xcc3_09210	COG3079	Belongs to the UPF0149 family
Xcc3_09220	COG0006	proline dipeptidase activity
Xcc3_09270	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Xcc3_09290	COG0346	lactoylglutathione lyase activity
Xcc3_09310	COG1561	YicC-like family, N-terminal region
Xcc3_09330	COG1758	RNA polymerase activity
Xcc3_09340	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Xcc3_09350	COG0583	DNA-binding transcription factor activity
Xcc3_09380	COG2271	Major facilitator Superfamily
Xcc3_09420	COG2721	sulfolactate sulfo-lyase activity
Xcc3_09440	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
Xcc3_09490	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
Xcc3_09500	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
Xcc3_09560	COG4796	Type ii and iii secretion system protein
Xcc3_09570	COG0714	Associated with various cellular activities
Xcc3_09610	COG2304	oxidoreductase activity
Xcc3_09630	COG1301	dicarboxylic acid transport
Xcc3_09640	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
Xcc3_09650	COG0596	Alpha beta hydrolase
Xcc3_09660	COG2801	Transposase and inactivated derivatives
Xcc3_09670	COG2963	transposase activity
Xcc3_09680	COG0739	heme binding
Xcc3_09690	COG1376	ErfK ybiS ycfS ynhG family protein
Xcc3_09750	COG4149	molybdate abc transporter
Xcc3_09760	COG0725	ABC transporter, periplasmic molybdate-binding protein
Xcc3_09770	COG3453	Protein conserved in bacteria
Xcc3_09770	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Xcc3_09810	COG3047	cAMP biosynthetic process
Xcc3_09840	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
Xcc3_09900	COG0469	pyruvate kinase activity
Xcc3_09910	COG3588	fructose-bisphosphate aldolase
Xcc3_09920	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
Xcc3_09980	COG2205	protein histidine kinase activity
Xcc3_09980	COG2198	Histidine kinase
Xcc3_09980	COG0784	Response regulator, receiver
Xcc3_10040	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
Xcc3_10060	COG2895	sulfate adenylyltransferase (ATP) activity
Xcc3_10060	COG0529	Catalyzes the synthesis of activated sulfate
Xcc3_10070	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Xcc3_10080	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Xcc3_10090	COG0308	aminopeptidase N
Xcc3_10110	COG1115	amino acid carrier protein
Xcc3_10120	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Xcc3_10150	COG4948	Mandelate Racemase Muconate Lactonizing
Xcc3_10160	COG3250	beta-galactosidase activity
Xcc3_10190	COG5297	Belongs to the glycosyl hydrolase family 6
Xcc3_10200	COG1609	Transcriptional regulator
Xcc3_10270	COG0471	metal ion transport
Xcc3_10270	COG3273	potassium ion transport
Xcc3_10510	COG2003	Belongs to the UPF0758 family
Xcc3_10550	COG2801	Transposase and inactivated derivatives
Xcc3_10560	COG2963	transposase activity
Xcc3_10620	COG2801	Transposase and inactivated derivatives
Xcc3_10630	COG2963	transposase activity
Xcc3_10780	COG0745	RESPONSE REGULATOR receiver
Xcc3_10840	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
Xcc3_10880	COG2194	sulfuric ester hydrolase activity
Xcc3_10990	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
Xcc3_10990	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
Xcc3_11010	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
Xcc3_11020	COG0564	pseudouridine synthase activity
Xcc3_11060	COG0840	transmembrane signaling receptor activity
Xcc3_11100	COG3387	PFAM Glycoside hydrolase 15-related
Xcc3_11110	COG1877	trehalose-phosphatase activity
Xcc3_11210	COG1116	anion transmembrane transporter activity
Xcc3_11230	COG0542	response to heat
Xcc3_11260	COG4206	TonB-dependent receptor
Xcc3_11300	COG1797	cobyrinic acid a,c-diamide synthase activity
Xcc3_11310	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
Xcc3_11370	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
Xcc3_11400	COG0019	diaminopimelate decarboxylase activity
Xcc3_11410	COG4264	IucA IucC family
Xcc3_11420	COG2814	Major facilitator Superfamily
Xcc3_11430	COG4264	IucA IucC family
Xcc3_11450	COG4772	TonB-dependent receptor
Xcc3_11470	COG4651	solute:proton antiporter activity
Xcc3_11470	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
Xcc3_11540	COG0488	(ABC) transporter
Xcc3_11580	COG0657	acetylesterase activity
Xcc3_11580	COG2755	lipolytic protein G-D-S-L family
Xcc3_11620	COG0477	Major facilitator Superfamily
Xcc3_11740	COG2255	four-way junction helicase activity
Xcc3_11750	COG0824	Thioesterase
Xcc3_11770	COG0848	biopolymer transport protein
Xcc3_11800	COG2885	chlorophyll binding
Xcc3_11820	COG0602	queuosine metabolic process
Xcc3_11880	COG0038	chloride channel
Xcc3_11890	COG0583	DNA-binding transcription factor activity
Xcc3_11940	COG1187	pseudouridine synthase activity
Xcc3_11980	COG0514	ATP-dependent DNA helicase (RecQ)
Xcc3_11990	COG0783	Belongs to the Dps family
Xcc3_12000	COG1643	Atp-dependent helicase
Xcc3_12090	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Xcc3_12110	COG1215	transferase activity, transferring glycosyl groups
Xcc3_12120	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
Xcc3_12140	COG1199	ATP-dependent helicase activity
Xcc3_12180	COG1397	ADP-ribosylglycohydrolase
Xcc3_12200	COG0189	ligase activity
Xcc3_12230	COG0835	chemotaxis
Xcc3_12240	COG0840	transmembrane signaling receptor activity
Xcc3_12320	COG1595	DNA-templated transcription, initiation
Xcc3_12330	COG2304	oxidoreductase activity
Xcc3_12340	COG1446	asparaginase
Xcc3_12440	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
Xcc3_12460	COG3645	SOS response
Xcc3_12550	COG3537	Alpha-1,2-mannosidase
Xcc3_12570	COG1472	Belongs to the glycosyl hydrolase 3 family
Xcc3_12590	COG3525	Glycosyl hydrolase, family 20, catalytic domain
Xcc3_12600	COG3858	chitin binding
Xcc3_12600	COG1388	LysM domain
Xcc3_12630	COG0837	glucose binding
Xcc3_12640	COG1385	rRNA (uridine-N3-)-methyltransferase activity
Xcc3_12660	COG0494	nUDIX hydrolase
Xcc3_12670	COG1218	3'(2'),5'-bisphosphate nucleotidase
Xcc3_12680	COG3956	TIGRFAM MazG family protein
Xcc3_12700	COG0330	HflC and HflK could
Xcc3_12780	COG1960	acyl-CoA dehydrogenase activity
Xcc3_12800	COG1309	transcriptional regulator
Xcc3_12830	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
Xcc3_12840	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
Xcc3_12860	COG0463	Glycosyl transferase, family 2
Xcc3_12870	COG0516	GMP reductase activity
Xcc3_12870	COG0517	IMP dehydrogenase activity
Xcc3_12880	COG2982	Protein involved in outer membrane biogenesis
Xcc3_12890	COG1272	protein, Hemolysin III
Xcc3_12920	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
Xcc3_12930	COG0626	cystathionine gamma-synthase activity
Xcc3_12940	COG0527	aspartate kinase activity
Xcc3_12940	COG0460	homoserine dehydrogenase
Xcc3_12960	COG1760	l-serine dehydratase
Xcc3_13000	COG2353	YceI-like domain
Xcc3_13040	COG0477	Major facilitator Superfamily
Xcc3_13110	COG1842	Phage shock protein A
Xcc3_13160	COG0754	glutathionylspermidine amidase activity
Xcc3_13170	COG2814	Major facilitator Superfamily
Xcc3_13290	COG2201	protein-glutamate methylesterase activity
Xcc3_13320	COG0531	amino acid
Xcc3_13330	COG2197	response regulator
Xcc3_13370	COG1113	amino acid transport
Xcc3_13380	COG1271	oxidase subunit
Xcc3_13390	COG1294	oxidase, subunit
Xcc3_13410	COG2239	Acts as a magnesium transporter
Xcc3_13420	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
Xcc3_13430	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
Xcc3_13440	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
Xcc3_13480	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
Xcc3_13510	COG1137	ATPase activity
Xcc3_13540	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
Xcc3_13560	COG0271	Belongs to the BolA IbaG family
Xcc3_13610	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
Xcc3_13650	COG0628	permease
Xcc3_13670	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
Xcc3_13700	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
Xcc3_13710	COG1555	photosystem II stabilization
Xcc3_13800	COG4774	siderophore transport
Xcc3_13830	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
Xcc3_13840	COG0719	Fe-S assembly protein
Xcc3_13850	COG0396	ATPase activity
Xcc3_13860	COG0719	Fe-S assembly protein
Xcc3_13890	COG0693	protein deglycase activity
Xcc3_13960	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
Xcc3_14020	COG0519	Catalyzes the synthesis of GMP from XMP
Xcc3_14030	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
Xcc3_14070	COG1764	response to oxidative stress
Xcc3_14090	COG0384	phenazine biosynthesis protein PhzF
Xcc3_14100	COG0384	phenazine biosynthesis protein PhzF
Xcc3_14110	COG0527	aspartate kinase activity
Xcc3_14160	COG0142	geranyltranstransferase activity
Xcc3_14170	COG0629	single-stranded DNA binding
Xcc3_14190	COG3713	MltA-interacting MipA family protein
Xcc3_14210	COG0745	RESPONSE REGULATOR receiver
Xcc3_14220	COG4251	negative regulation of phosphorylation
Xcc3_14230	COG2203	Gaf domain
Xcc3_14230	COG3706	GGDEF domain
Xcc3_14230	COG4251	negative regulation of phosphorylation
Xcc3_14230	COG5001	Diguanylate cyclase
Xcc3_14240	COG0604	alcohol dehydrogenase
Xcc3_14250	COG2080	2 iron, 2 sulfur cluster binding
Xcc3_14260	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
Xcc3_14270	COG1529	Aldehyde oxidase and xanthine dehydrogenase
Xcc3_14280	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
Xcc3_14290	COG0746	molybdenum cofactor guanylyltransferase activity
Xcc3_14350	COG2879	small protein
Xcc3_14360	COG1966	Carbon starvation protein
Xcc3_14370	COG1741	Belongs to the pirin family
Xcc3_14400	COG1741	Belongs to the pirin family
Xcc3_14440	COG3590	peptidase
Xcc3_14450	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Xcc3_14470	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
Xcc3_14490	COG0835	chemotaxis
Xcc3_14500	COG0840	transmembrane signaling receptor activity
Xcc3_14510	COG2198	Histidine kinase
Xcc3_14510	COG0643	Histidine kinase
Xcc3_14530	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
Xcc3_14550	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
Xcc3_14560	COG0745	RESPONSE REGULATOR receiver
Xcc3_14580	COG2205	protein histidine kinase activity
Xcc3_14590	COG4452	Inner membrane protein CreD
Xcc3_14660	COG0735	belongs to the Fur family
Xcc3_14690	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Xcc3_14700	COG1538	Outer membrane efflux protein
Xcc3_14710	COG1309	transcriptional regulator
Xcc3_14720	COG0667	Aldo Keto reductase
Xcc3_14750	COG2207	Transcriptional regulator
Xcc3_14790	COG0583	DNA-binding transcription factor activity
Xcc3_14800	COG2814	Major facilitator Superfamily
Xcc3_14810	COG0667	Aldo Keto reductase
Xcc3_14860	COG1404	Belongs to the peptidase S8 family
Xcc3_14890	COG3383	formate dehydrogenase (NAD+) activity
Xcc3_14910	COG1271	oxidase subunit
Xcc3_14920	COG1294	oxidase, subunit
Xcc3_15010	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
Xcc3_15060	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Xcc3_15110	COG5001	Diguanylate cyclase
Xcc3_15110	COG5002	protein histidine kinase activity
Xcc3_15120	COG1187	pseudouridine synthase activity
Xcc3_15160	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
Xcc3_15170	COG0475	glutathione-regulated potassium exporter activity
Xcc3_15180	COG1132	(ABC) transporter
Xcc3_15270	COG2155	Conserved Protein
Xcc3_15290	COG3118	belongs to the thioredoxin family
Xcc3_15340	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
Xcc3_15400	COG2968	Membrane
Xcc3_15420	COG1530	ribonuclease E activity
Xcc3_15430	COG3164	Protein of unknown function
Xcc3_15450	COG0312	modulator of DNA gyrase
Xcc3_15470	COG0312	modulator of DNA gyrase
Xcc3_15490	COG4104	PAAR repeat-containing protein
Xcc3_15500	COG0142	geranyltranstransferase activity
Xcc3_15530	COG1785	Belongs to the alkaline phosphatase family
Xcc3_15540	COG1301	dicarboxylic acid transport
Xcc3_15550	COG4106	trans-aconitate 2-methyltransferase activity
Xcc3_15580	COG4191	Histidine kinase
Xcc3_15590	COG3284	Transcriptional regulator
Xcc3_15650	COG0791	NLP P60 protein
Xcc3_15660	COG0791	NLP P60 protein
Xcc3_15670	COG1047	Peptidyl-prolyl cis-trans
Xcc3_15680	COG2311	Membrane
Xcc3_15690	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Xcc3_15700	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Xcc3_15740	COG3590	peptidase
Xcc3_15750	COG3590	peptidase
Xcc3_15780	COG0489	protein tyrosine kinase activity
Xcc3_15830	COG0412	Dienelactone hydrolase
Xcc3_15860	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
Xcc3_15900	COG0494	nUDIX hydrolase
Xcc3_15920	COG0433	COG0433 Predicted ATPase
Xcc3_15970	COG2890	protein-(glutamine-N5) methyltransferase activity
Xcc3_16000	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Xcc3_16010	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
Xcc3_16190	COG4221	oxidoreductase activity
Xcc3_16220	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Xcc3_16260	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
Xcc3_16270	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
Xcc3_16310	COG0839	Belongs to the complex I subunit 6 family
Xcc3_16320	COG0713	ATP synthesis coupled electron transport
Xcc3_16350	COG1007	ATP synthesis coupled electron transport
Xcc3_16370	COG0195	Participates in both transcription termination and antitermination
Xcc3_16490	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
Xcc3_16510	COG2095	MarC family integral membrane protein
Xcc3_16530	COG1611	Belongs to the LOG family
Xcc3_16540	COG3275	phosphorelay sensor kinase activity
Xcc3_16640	COG3505	Type IV secretory pathway VirD4
Xcc3_16680	COG2948	multi-organism process
Xcc3_16720	COG3702	type iv secretory pathway
Xcc3_16850	COG0366	Alpha amylase catalytic
Xcc3_16870	COG1082	Xylose isomerase domain protein TIM barrel
Xcc3_16930	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
Xcc3_16940	COG0291	Belongs to the bacterial ribosomal protein bL35 family
Xcc3_16980	COG0776	regulation of translation
Xcc3_17060	COG0438	transferase activity, transferring glycosyl groups
Xcc3_17070	COG0438	transferase activity, transferring glycosyl groups
Xcc3_17080	COG2244	polysaccharide biosynthetic process
Xcc3_17140	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
Xcc3_17160	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
Xcc3_17220	COG1960	acyl-CoA dehydrogenase activity
Xcc3_17250	COG0322	excinuclease ABC activity
Xcc3_17290	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
Xcc3_17320	COG0784	Response regulator, receiver
Xcc3_17320	COG4191	Histidine kinase
Xcc3_17360	COG0552	protein localization to endoplasmic reticulum
Xcc3_17380	COG3938	Belongs to the proline racemase family
Xcc3_17420	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
Xcc3_17440	COG0006	proline dipeptidase activity
Xcc3_17490	COG0531	amino acid
Xcc3_17570	COG4206	TonB-dependent receptor
Xcc3_17600	COG3507	Belongs to the glycosyl hydrolase 43 family
Xcc3_17610	COG0823	Involved in the tonB-independent uptake of proteins
Xcc3_17610	COG1506	peptidase
Xcc3_17670	COG2963	transposase activity
Xcc3_17700	COG2801	Transposase and inactivated derivatives
Xcc3_17710	COG2963	transposase activity
Xcc3_17740	COG2801	Transposase and inactivated derivatives
Xcc3_17750	COG0326	Molecular chaperone. Has ATPase activity
Xcc3_17760	COG0742	ribosomal rna small subunit methyltransferase
Xcc3_17800	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
Xcc3_17810	COG0405	Gamma-glutamyltransferase
Xcc3_17820	COG3291	Pkd domain containing protein
Xcc3_17880	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
Xcc3_17920	COG1862	Preprotein translocase
Xcc3_17940	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Xcc3_17980	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Xcc3_17980	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Xcc3_17990	COG1105	Belongs to the carbohydrate kinase PfkB family
Xcc3_18000	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
Xcc3_18000	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
Xcc3_18010	COG1609	Transcriptional regulator
Xcc3_18020	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Xcc3_18030	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Xcc3_18050	COG2902	Dehydrogenase
Xcc3_18060	COG2207	Transcriptional regulator
Xcc3_18060	COG1609	Transcriptional regulator
Xcc3_18070	COG1335	isochorismatase
Xcc3_18080	COG0477	Major facilitator Superfamily
Xcc3_18100	COG0784	Response regulator, receiver
Xcc3_18100	COG2205	protein histidine kinase activity
Xcc3_18100	COG5002	protein histidine kinase activity
Xcc3_18110	COG2733	membrane
Xcc3_18190	COG0243	molybdopterin cofactor binding
Xcc3_18210	COG0477	Major facilitator Superfamily
Xcc3_18220	COG2703	oxygen carrier activity
Xcc3_18230	COG3706	GGDEF domain
Xcc3_18230	COG0745	RESPONSE REGULATOR receiver
Xcc3_18240	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Xcc3_18250	COG0174	glutamine synthetase
Xcc3_18260	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
Xcc3_18330	COG3842	ATPase activity
Xcc3_18340	COG1176	ABC-type spermidine putrescine transport system, permease component I
Xcc3_18350	COG1177	transmembrane transport
Xcc3_18370	COG1012	belongs to the aldehyde dehydrogenase family
Xcc3_18380	COG1012	belongs to the aldehyde dehydrogenase family
Xcc3_18410	COG4535	Mg2 and Co2 transporter CorC
Xcc3_18450	COG1702	phosphate starvation-inducible protein PhoH
Xcc3_18490	COG0741	lytic transglycosylase activity
Xcc3_18500	COG0723	plastoquinol--plastocyanin reductase activity
Xcc3_18510	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
Xcc3_18520	COG2857	Cytochrome c1
Xcc3_18530	COG0625	glutathione transferase activity
Xcc3_18540	COG2969	positive regulation of protein catabolic process
Xcc3_18570	COG1201	RNA secondary structure unwinding
Xcc3_18590	COG0840	transmembrane signaling receptor activity
Xcc3_18600	COG0835	chemotaxis
Xcc3_18700	COG0582	viral genome integration into host DNA
Xcc3_18750	COG1262	PFAM Formylglycine-generating sulfatase enzyme
Xcc3_18780	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
Xcc3_18790	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
Xcc3_18790	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
Xcc3_18810	COG0860	N-Acetylmuramoyl-L-alanine amidase
Xcc3_18870	COG1028	Short-chain dehydrogenase reductase Sdr
Xcc3_18900	COG5001	Diguanylate cyclase
Xcc3_18900	COG3300	MHYT domain
Xcc3_18910	COG2081	HI0933 family
Xcc3_18920	COG4681	YaeQ
Xcc3_18990	COG0513	Belongs to the DEAD box helicase family
Xcc3_19050	COG0483	inositol monophosphate 1-phosphatase activity
Xcc3_19080	COG3300	MHYT domain
Xcc3_19080	COG5001	Diguanylate cyclase
Xcc3_19090	COG1509	lysine 2,3-aminomutase activity
Xcc3_19120	COG0402	S-adenosylhomocysteine deaminase activity
Xcc3_19170	COG4677	pectinesterase activity
Xcc3_19250	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
Xcc3_19270	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
Xcc3_19320	COG2166	iron-sulfur cluster assembly
Xcc3_19350	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
Xcc3_19370	COG0137	argininosuccinate synthase activity
Xcc3_19390	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
Xcc3_19510	COG1294	oxidase, subunit
Xcc3_19530	COG4988	ABC transporter
Xcc3_19540	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
Xcc3_19660	COG0436	Aminotransferase
Xcc3_19720	COG1187	pseudouridine synthase activity
Xcc3_19730	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
Xcc3_19740	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
Xcc3_19750	COG2350	Protein conserved in bacteria
Xcc3_19800	COG2182	Extracellular solute-binding protein
Xcc3_19820	COG0395	ABC-type sugar transport system, permease component
Xcc3_19870	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
Xcc3_19880	COG2957	Belongs to the agmatine deiminase family
Xcc3_19910	COG0539	negative regulation of cytoplasmic translation
Xcc3_19940	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
Xcc3_19950	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
Xcc3_19980	COG1210	Utp--glucose-1-phosphate uridylyltransferase
Xcc3_19990	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
Xcc3_19990	COG0475	glutathione-regulated potassium exporter activity
Xcc3_20070	COG2197	response regulator
Xcc3_20100	COG1335	isochorismatase
Xcc3_20130	COG2814	Major facilitator Superfamily
Xcc3_20160	COG1914	H( )-stimulated, divalent metal cation uptake system
Xcc3_20170	COG1321	iron dependent repressor
Xcc3_20180	COG0590	tRNA wobble adenosine to inosine editing
Xcc3_20200	COG0668	transmembrane transport
Xcc3_20250	COG1028	Short-chain dehydrogenase reductase Sdr
Xcc3_20260	COG1183	phosphatidylcholine synthase activity
Xcc3_20280	COG3243	poly(R)-hydroxyalkanoic acid synthase
Xcc3_20310	COG0723	plastoquinol--plastocyanin reductase activity
Xcc3_20310	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Xcc3_20330	COG2183	response to ionizing radiation
Xcc3_20340	COG5001	Diguanylate cyclase
Xcc3_20430	COG0800	Aldolase
Xcc3_20440	COG0129	dihydroxy-acid dehydratase activity
Xcc3_20450	COG0363	glucosamine-6-phosphate deaminase activity
Xcc3_20470	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
Xcc3_20490	COG0354	folic acid binding
Xcc3_20520	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
Xcc3_20530	COG1053	succinate dehydrogenase
Xcc3_20540	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
Xcc3_20570	COG4591	ABC-type transport system involved in lipoprotein release permease component
Xcc3_20610	COG0811	peptide transport
Xcc3_20660	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
Xcc3_20690	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
Xcc3_20700	COG0582	viral genome integration into host DNA
Xcc3_20770	COG2963	transposase activity
Xcc3_20780	COG2801	Transposase and inactivated derivatives
Xcc3_20800	COG2963	transposase activity
Xcc3_20810	COG2801	Transposase and inactivated derivatives
Xcc3_20830	COG0583	DNA-binding transcription factor activity
Xcc3_20850	COG2963	transposase activity
Xcc3_20860	COG1002	Type II restriction enzyme, methylase subunits
Xcc3_20870	COG1061	Type III restriction enzyme res subunit
Xcc3_20880	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
Xcc3_20910	COG5599	Phosphatase
Xcc3_20920	COG4644	lycopene metabolic process
Xcc3_20930	COG2963	transposase activity
Xcc3_20940	COG2801	Transposase and inactivated derivatives
Xcc3_20960	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
Xcc3_21060	COG0840	transmembrane signaling receptor activity
Xcc3_21070	COG1530	ribonuclease E activity
Xcc3_21090	COG0428	transporter
Xcc3_21150	COG0653	protein targeting
Xcc3_21200	COG0653	protein targeting
Xcc3_21230	COG0464	growth
Xcc3_21280	COG0210	DNA helicase
Xcc3_21400	COG2963	transposase activity
Xcc3_21500	COG3279	Response regulator of the LytR AlgR family
Xcc3_21530	COG4191	Histidine kinase
Xcc3_21530	COG0784	Response regulator, receiver
Xcc3_21540	COG0840	transmembrane signaling receptor activity
Xcc3_21620	COG0840	transmembrane signaling receptor activity
Xcc3_21640	COG1238	metal cluster binding
Xcc3_21700	COG1733	regulation of RNA biosynthetic process
Xcc3_21730	COG1999	signal sequence binding
Xcc3_21760	COG3590	peptidase
Xcc3_21920	COG5001	Diguanylate cyclase
Xcc3_21940	COG2201	protein-glutamate methylesterase activity
Xcc3_21950	COG3685	Protein conserved in bacteria
Xcc3_21980	COG0579	oxidoreductase
Xcc3_22000	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
Xcc3_22020	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
Xcc3_22060	COG0243	molybdopterin cofactor binding
Xcc3_22080	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
Xcc3_22090	COG2223	nitrite transmembrane transporter activity
Xcc3_22100	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Xcc3_22120	COG1648	precorrin-2 dehydrogenase activity
Xcc3_22120	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
Xcc3_22140	COG0746	molybdenum cofactor guanylyltransferase activity
Xcc3_22150	COG0303	'Molybdopterin
Xcc3_22170	COG0708	Exodeoxyribonuclease III
Xcc3_22220	COG2124	cytochrome p450
Xcc3_22230	COG1028	Short-chain dehydrogenase reductase Sdr
Xcc3_22260	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
Xcc3_22290	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
Xcc3_22340	COG0105	UTP biosynthetic process
Xcc3_22360	COG1024	Enoyl-CoA hydratase
Xcc3_22360	COG1250	3-hydroxyacyl-CoA dehydrogenase
Xcc3_22370	COG0183	Belongs to the thiolase family
Xcc3_22380	COG0038	chloride channel
Xcc3_22390	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
Xcc3_22430	COG1674	ftsk spoiiie
Xcc3_22440	COG0492	ferredoxin-NADP+ reductase activity
Xcc3_22470	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
Xcc3_22480	COG0542	response to heat
Xcc3_22520	COG2915	High frequency lysogenization protein hflD homolog
Xcc3_22590	COG4191	Histidine kinase
Xcc3_22630	COG0784	Response regulator, receiver
Xcc3_22630	COG0835	chemotaxis
Xcc3_22660	COG1558	bacterial-type flagellum-dependent cell motility
Xcc3_22670	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
Xcc3_22680	COG1749	Flagellar hook protein flgE
Xcc3_22690	COG4787	bacterial-type flagellum-dependent cell motility
Xcc3_22700	COG4786	Flagellar basal body rod
Xcc3_22730	COG3951	Flagellar rod assembly protein muramidase FlgJ
Xcc3_22730	COG1705	Flagellar rod assembly protein muramidase FlgJ
Xcc3_22750	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
Xcc3_22760	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
Xcc3_22770	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
Xcc3_22830	COG2201	protein-glutamate methylesterase activity
Xcc3_22850	COG2204	response regulator
Xcc3_22900	COG1216	Glycosyl transferase, family 2
Xcc3_22900	COG0438	transferase activity, transferring glycosyl groups
Xcc3_22910	COG1677	Flagellar hook-basal body complex protein FliE
Xcc3_23040	COG1987	bacterial-type flagellum assembly
Xcc3_23050	COG1684	flagellar biosynthetic protein fliR
Xcc3_23060	COG3300	MHYT domain
Xcc3_23060	COG5001	Diguanylate cyclase
Xcc3_23130	COG0455	bacterial-type flagellum organization
Xcc3_23180	COG0643	Histidine kinase
Xcc3_23180	COG2198	Histidine kinase
Xcc3_23190	COG0643	Histidine kinase
Xcc3_23190	COG2198	Histidine kinase
Xcc3_23240	COG2963	transposase activity
Xcc3_23340	COG2801	Transposase and inactivated derivatives
Xcc3_23350	COG2963	transposase activity
Xcc3_23390	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
Xcc3_23400	COG1360	Flagellar Motor Protein
Xcc3_23410	COG1192	Involved in chromosome partitioning
Xcc3_23420	COG0835	chemotaxis
Xcc3_23440	COG0745	RESPONSE REGULATOR receiver
Xcc3_23460	COG0840	transmembrane signaling receptor activity
Xcc3_23490	COG0840	transmembrane signaling receptor activity
Xcc3_23500	COG0840	transmembrane signaling receptor activity
Xcc3_23510	COG0840	transmembrane signaling receptor activity
Xcc3_23520	COG0840	transmembrane signaling receptor activity
Xcc3_23530	COG0840	transmembrane signaling receptor activity
Xcc3_23570	COG0840	transmembrane signaling receptor activity
Xcc3_23590	COG0835	chemotaxis
Xcc3_23610	COG0840	transmembrane signaling receptor activity
Xcc3_23640	COG2201	protein-glutamate methylesterase activity
Xcc3_23660	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
Xcc3_23720	COG0318	PFAM AMP-dependent synthetase and ligase
Xcc3_23730	COG1024	Enoyl-CoA hydratase
Xcc3_23740	COG2205	protein histidine kinase activity
Xcc3_23740	COG2198	Histidine kinase
Xcc3_23740	COG0784	Response regulator, receiver
Xcc3_23780	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
Xcc3_23790	COG3279	Response regulator of the LytR AlgR family
Xcc3_23850	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
Xcc3_23870	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
Xcc3_23880	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
Xcc3_23900	COG0505	Belongs to the CarA family
Xcc3_23920	COG2258	MOSC domain
Xcc3_23930	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Xcc3_23970	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
Xcc3_23990	COG1024	Enoyl-CoA hydratase
Xcc3_24060	COG0277	FAD linked oxidase domain protein
Xcc3_24070	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
Xcc3_24100	COG0531	amino acid
Xcc3_24110	COG0531	amino acid
Xcc3_24170	COG0140	phosphoribosyl-ATP diphosphatase activity
Xcc3_24170	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
Xcc3_24230	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
Xcc3_24240	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
Xcc3_24270	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Xcc3_24310	COG0083	homoserine kinase activity
Xcc3_24330	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
Xcc3_24380	COG2963	transposase activity
Xcc3_24400	COG1012	belongs to the aldehyde dehydrogenase family
Xcc3_24460	COG0697	spore germination
Xcc3_24470	COG1794	racemase activity, acting on amino acids and derivatives
Xcc3_24490	COG0477	Major facilitator Superfamily
Xcc3_24500	COG0671	phosphoesterase, PA-phosphatase related
Xcc3_24530	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
Xcc3_24540	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
Xcc3_24550	COG5001	Diguanylate cyclase
Xcc3_24550	COG4251	negative regulation of phosphorylation
Xcc3_24550	COG3706	GGDEF domain
Xcc3_24550	COG2203	Gaf domain
Xcc3_24570	COG1472	Belongs to the glycosyl hydrolase 3 family
Xcc3_24670	COG0860	N-Acetylmuramoyl-L-alanine amidase
Xcc3_24710	COG0477	Major facilitator Superfamily
Xcc3_24730	COG1070	Carbohydrate kinase
Xcc3_24750	COG1501	Belongs to the glycosyl hydrolase 31 family
Xcc3_24820	COG0800	Aldolase
Xcc3_24850	COG3734	2-keto-3-deoxy-galactonokinase
Xcc3_24860	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
Xcc3_24880	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
Xcc3_24910	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
Xcc3_24920	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
Xcc3_24940	COG0352	thiamine-phosphate diphosphorylase activity
Xcc3_24940	COG0351	phosphomethylpyrimidine kinase
Xcc3_24970	COG0583	DNA-binding transcription factor activity
Xcc3_24980	COG1741	Belongs to the pirin family
Xcc3_25040	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
Xcc3_25060	COG4771	TonB-dependent receptor
Xcc3_25070	COG1546	Belongs to the CinA family
Xcc3_25080	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
Xcc3_25110	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
Xcc3_25120	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
Xcc3_25140	COG1534	Rna-binding protein
Xcc3_25170	COG1238	metal cluster binding
Xcc3_25200	COG2840	Smr protein MutS2
Xcc3_25330	COG2134	cdp-diacylglycerol pyrophosphatase
Xcc3_25380	COG1253	flavin adenine dinucleotide binding
Xcc3_25410	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
Xcc3_25430	COG0477	Major facilitator Superfamily
Xcc3_25440	COG1132	(ABC) transporter
Xcc3_25480	COG0438	transferase activity, transferring glycosyl groups
Xcc3_25490	COG0438	transferase activity, transferring glycosyl groups
Xcc3_25560	COG2244	polysaccharide biosynthetic process
Xcc3_25590	COG3038	cytochrome b561
Xcc3_25660	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
Xcc3_25690	COG1138	Cytochrome C-type biogenesis protein
Xcc3_25700	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
Xcc3_25730	COG0784	Response regulator, receiver
Xcc3_25730	COG4191	Histidine kinase
Xcc3_25740	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
Xcc3_25840	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
Xcc3_26080	COG2963	transposase activity
Xcc3_26120	COG2003	Belongs to the UPF0758 family
Xcc3_26250	COG0583	DNA-binding transcription factor activity
Xcc3_26280	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
Xcc3_26300	COG1605	Chorismate mutase
Xcc3_26300	COG0077	Prephenate dehydratase
Xcc3_26320	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
Xcc3_26430	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
Xcc3_26450	COG4993	Dehydrogenase
Xcc3_26490	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
Xcc3_26510	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Xcc3_26580	COG0316	Belongs to the HesB IscA family
Xcc3_26640	COG0288	reversible hydration of carbon dioxide
Xcc3_26700	COG2925	Exonuclease
Xcc3_26710	COG2925	Exonuclease
Xcc3_26870	COG0494	nUDIX hydrolase
Xcc3_26890	COG1024	Enoyl-CoA hydratase
Xcc3_26910	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
Xcc3_26920	COG0659	secondary active sulfate transmembrane transporter activity
Xcc3_26970	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
Xcc3_26980	COG0573	inorganic phosphate transmembrane transporter activity
Xcc3_26990	COG0581	inorganic phosphate transmembrane transporter activity
Xcc3_27010	COG0704	Plays a role in the regulation of phosphate uptake
Xcc3_27040	COG3706	GGDEF domain
Xcc3_27060	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Xcc3_27100	COG0557	exoribonuclease II activity
Xcc3_27120	COG1960	acyl-CoA dehydrogenase activity
Xcc3_27130	COG1960	acyl-CoA dehydrogenase activity
Xcc3_27150	COG1410	methionine synthase
Xcc3_27150	COG0646	methionine synthase
Xcc3_27160	COG0646	methionine synthase
Xcc3_27160	COG1410	methionine synthase
Xcc3_27180	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Xcc3_27200	COG1609	Transcriptional regulator
Xcc3_27260	COG0386	Belongs to the glutathione peroxidase family
Xcc3_27280	COG1725	Transcriptional regulator
Xcc3_27290	COG1131	(ABC) transporter
Xcc3_27350	COG1253	flavin adenine dinucleotide binding
Xcc3_27360	COG1253	flavin adenine dinucleotide binding
Xcc3_27390	COG2850	peptidyl-arginine hydroxylation
Xcc3_27470	COG1132	(ABC) transporter
Xcc3_27480	COG0583	DNA-binding transcription factor activity
Xcc3_27490	COG2274	protein secretion by the type I secretion system
Xcc3_27540	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
Xcc3_27570	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
Xcc3_27580	COG1420	regulation of RNA biosynthetic process
Xcc3_27590	COG0497	DNA recombination
Xcc3_27610	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
Xcc3_27650	COG1404	Belongs to the peptidase S8 family
Xcc3_27700	COG2963	transposase activity
Xcc3_27800	COG2963	transposase activity
Xcc3_27820	COG2801	Transposase and inactivated derivatives
Xcc3_27830	COG2963	transposase activity
Xcc3_27860	COG2963	transposase activity
Xcc3_27880	COG2963	transposase activity
Xcc3_27890	COG3039	Transposase
Xcc3_27950	COG2801	Transposase and inactivated derivatives
Xcc3_27960	COG2963	transposase activity
Xcc3_28020	COG3706	GGDEF domain
Xcc3_28040	COG3706	GGDEF domain
Xcc3_28060	COG1028	Short-chain dehydrogenase reductase Sdr
Xcc3_28080	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Xcc3_28110	COG0583	DNA-binding transcription factor activity
Xcc3_28130	COG0415	Belongs to the DNA photolyase family
Xcc3_28140	COG0305	Participates in initiation and elongation during chromosome replication
Xcc3_28160	COG0367	asparagine synthase
Xcc3_28190	COG1960	acyl-CoA dehydrogenase activity
Xcc3_28220	COG0084	hydrolase, TatD family'
Xcc3_28230	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
Xcc3_28360	COG0386	Belongs to the glutathione peroxidase family
Xcc3_28370	COG0339	signal peptide processing
Xcc3_28480	COG2814	Major facilitator Superfamily
Xcc3_28490	COG1566	PFAM secretion protein HlyD family protein
Xcc3_28580	COG4774	siderophore transport
Xcc3_28600	COG0367	asparagine synthase
Xcc3_28630	COG1393	Belongs to the ArsC family
Xcc3_28670	COG0024	Methionine aminopeptidase
Xcc3_28750	COG0745	RESPONSE REGULATOR receiver
Xcc3_28750	COG3706	GGDEF domain
Xcc3_28780	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
Xcc3_28790	COG0575	Belongs to the CDS family
Xcc3_28810	COG0750	zinc metalloprotease
Xcc3_28960	COG1695	Transcriptional regulator
Xcc3_29020	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
Xcc3_29040	COG2040	homocysteine
Xcc3_29050	COG0833	amino acid
Xcc3_29070	COG0346	lactoylglutathione lyase activity
Xcc3_29120	COG2878	Part of a membrane complex involved in electron transport
Xcc3_29150	COG1595	DNA-templated transcription, initiation
Xcc3_29200	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
Xcc3_29230	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
Xcc3_29240	COG0251	oxidation-reduction process
Xcc3_29260	COG0392	lysyltransferase activity
Xcc3_29260	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
Xcc3_29330	COG2814	Major facilitator Superfamily
Xcc3_29340	COG1902	pentaerythritol trinitrate reductase activity
Xcc3_29390	COG2824	Alkylphosphonate utilization operon protein PhnA
Xcc3_29410	COG1047	Peptidyl-prolyl cis-trans
Xcc3_29490	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
Xcc3_29510	COG5487	UPF0391 membrane protein
Xcc3_29520	COG1451	nucleotide metabolic process
Xcc3_29550	COG0183	Belongs to the thiolase family
Xcc3_29580	COG3706	GGDEF domain
Xcc3_29580	COG0745	RESPONSE REGULATOR receiver
Xcc3_29610	COG1793	dna ligase
Xcc3_29610	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
Xcc3_29630	COG1793	dna ligase
Xcc3_29640	COG1201	RNA secondary structure unwinding
Xcc3_29660	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Xcc3_29670	COG1278	Cold shock
Xcc3_29680	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
Xcc3_29710	COG3046	protein related to deoxyribodipyrimidine photolyase
Xcc3_29720	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
Xcc3_29720	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Xcc3_29730	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
Xcc3_29860	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Xcc3_29920	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
Xcc3_29930	COG1024	Enoyl-CoA hydratase
Xcc3_29940	COG1960	acyl-CoA dehydrogenase activity
Xcc3_29960	COG1396	sequence-specific DNA binding
Xcc3_29960	COG3800	Transcriptional regulator
Xcc3_29980	COG3867	Arabinogalactan endo-beta-1,4-galactanase
Xcc3_29990	COG3250	beta-galactosidase activity
Xcc3_30060	COG2801	Transposase and inactivated derivatives
Xcc3_30070	COG2963	transposase activity
Xcc3_30240	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
Xcc3_30350	COG5297	Belongs to the glycosyl hydrolase family 6
Xcc3_30400	COG1309	transcriptional regulator
Xcc3_30410	COG0436	Aminotransferase
Xcc3_30450	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
Xcc3_30450	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Xcc3_30470	COG3483	tryptophan 2,3-dioxygenase activity
Xcc3_30610	COG2003	Belongs to the UPF0758 family
Xcc3_30640	COG2963	transposase activity
Xcc3_30730	COG4248	protein with protein kinase and helix-hairpin-helix DNA-binding domains
Xcc3_30740	COG0631	protein serine/threonine phosphatase activity
Xcc3_30750	COG4245	von Willebrand factor, type A
Xcc3_30870	COG0534	Mate efflux family protein
Xcc3_30930	COG2070	2-Nitropropane dioxygenase
Xcc3_30960	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
Xcc3_30990	COG3534	alpha-L-arabinofuranosidase
Xcc3_31040	COG4191	Histidine kinase
Xcc3_31040	COG0784	Response regulator, receiver
Xcc3_31050	COG2205	protein histidine kinase activity
Xcc3_31050	COG3437	response regulator, receiver
Xcc3_31050	COG4999	Histidine kinase
Xcc3_31050	COG3850	Histidine kinase
Xcc3_31060	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
Xcc3_31080	COG2205	protein histidine kinase activity
Xcc3_31090	COG5507	3-demethylubiquinone-9 3-methyltransferase
Xcc3_31110	COG4771	TonB-dependent receptor
Xcc3_31160	COG2172	sigma factor antagonist activity
Xcc3_31170	COG1366	Belongs to the anti-sigma-factor antagonist family
Xcc3_31180	COG1366	Belongs to the anti-sigma-factor antagonist family
Xcc3_31190	COG1902	pentaerythritol trinitrate reductase activity
Xcc3_31210	COG0326	Molecular chaperone. Has ATPase activity
Xcc3_31220	COG2207	Transcriptional regulator
Xcc3_31240	COG3152	Membrane
Xcc3_31270	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
Xcc3_31280	COG1845	cytochrome c oxidase, subunit III
Xcc3_31290	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
Xcc3_31340	COG0196	riboflavin kinase activity
Xcc3_31400	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
Xcc3_31410	COG0824	Thioesterase
Xcc3_31420	COG1024	Enoyl-CoA hydratase
Xcc3_31430	COG1946	Acyl-CoA thioesterase
Xcc3_31450	COG1595	DNA-templated transcription, initiation
Xcc3_31580	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
Xcc3_31630	COG2197	response regulator
Xcc3_31640	COG4585	Histidine kinase
Xcc3_31670	COG2894	cell division
Xcc3_31700	COG5002	protein histidine kinase activity
Xcc3_31710	COG0745	RESPONSE REGULATOR receiver
Xcc3_31780	COG2814	Major facilitator Superfamily
Xcc3_31820	COG0656	L-ascorbic acid biosynthetic process
Xcc3_31830	COG0753	catalase activity
Xcc3_31840	COG0753	catalase activity
Xcc3_31850	COG2207	Transcriptional regulator
Xcc3_31850	COG1917	Cupin 2, conserved barrel domain protein
Xcc3_31890	COG0823	Involved in the tonB-independent uptake of proteins
Xcc3_31890	COG1506	peptidase
Xcc3_31910	COG1297	OPT oligopeptide transporter protein
Xcc3_31970	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
Xcc3_32040	COG2080	2 iron, 2 sulfur cluster binding
Xcc3_32050	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
Xcc3_32060	COG1529	Aldehyde oxidase and xanthine dehydrogenase
Xcc3_32150	COG1028	Short-chain dehydrogenase reductase Sdr
Xcc3_32160	COG3537	Alpha-1,2-mannosidase
Xcc3_32180	COG1028	Short-chain dehydrogenase reductase Sdr
Xcc3_32190	COG3387	PFAM Glycoside hydrolase 15-related
Xcc3_32210	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
Xcc3_32220	COG0406	alpha-ribazole phosphatase activity
Xcc3_32220	COG0328	RNA-DNA hybrid ribonuclease activity
Xcc3_32280	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
Xcc3_32310	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
Xcc3_32400	COG0308	aminopeptidase N
Xcc3_32430	COG0330	HflC and HflK could
Xcc3_32440	COG0330	HflC and HflK could
Xcc3_32480	COG0678	peroxiredoxin activity
Xcc3_32500	COG4953	penicillin-binding protein 1C
Xcc3_32550	COG2373	Large extracellular alpha-helical protein
Xcc3_32630	COG3609	addiction module antidote protein, CC2985 family
Xcc3_32670	COG3829	transcription factor binding
Xcc3_32870	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
Xcc3_32880	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
Xcc3_32900	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
Xcc3_32910	COG1028	Short-chain dehydrogenase reductase Sdr
Xcc3_32920	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
Xcc3_32930	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
Xcc3_32950	COG1399	metal-binding, possibly nucleic acid-binding protein
Xcc3_33010	COG0714	Associated with various cellular activities
Xcc3_33050	COG0537	adenosine 5'-monophosphoramidase activity
Xcc3_33070	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
Xcc3_33090	COG0314	molybdopterin synthase activity
Xcc3_33100	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
Xcc3_33140	COG1234	tRNA 3'-trailer cleavage
Xcc3_33160	COG0859	PFAM glycosyl transferase family 9
Xcc3_33180	COG0631	protein serine/threonine phosphatase activity
Xcc3_33190	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
Xcc3_33240	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Xcc3_33280	COG0740	serine-type endopeptidase activity
Xcc3_33310	COG0473	3-isopropylmalate dehydrogenase activity
Xcc3_33340	COG4783	chaperone-mediated protein folding
Xcc3_33350	COG0745	RESPONSE REGULATOR receiver
Xcc3_33370	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
Xcc3_33390	COG0438	transferase activity, transferring glycosyl groups
Xcc3_33400	COG0671	phosphoesterase, PA-phosphatase related
Xcc3_33430	COG3291	Pkd domain containing protein
Xcc3_33450	COG2833	Protein of unknown function (DUF455)
Xcc3_33490	COG0285	dihydrofolate synthase activity
Xcc3_33520	COG0406	alpha-ribazole phosphatase activity
Xcc3_33570	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
Xcc3_33580	COG4208	sulfate ABC transporter
Xcc3_33590	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
Xcc3_33600	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
Xcc3_33680	COG0446	pyridine nucleotide-disulphide oxidoreductase
Xcc3_33680	COG1902	pentaerythritol trinitrate reductase activity
Xcc3_33710	COG0625	glutathione transferase activity
Xcc3_33730	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
Xcc3_33760	COG0154	amidase activity
Xcc3_33780	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
Xcc3_33810	COG0202	RNA polymerase activity
Xcc3_33820	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
Xcc3_33830	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
Xcc3_33840	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
Xcc3_33850	COG0201	protein transport
Xcc3_33880	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
Xcc3_33920	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
Xcc3_33940	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
Xcc3_33950	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
Xcc3_34000	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
Xcc3_34170	COG0250	Participates in transcription elongation, termination and antitermination
Xcc3_34180	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
Xcc3_34190	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
Xcc3_34200	COG0012	GTP binding
Xcc3_34210	COG0193	aminoacyl-tRNA hydrolase activity
Xcc3_34230	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
Xcc3_34300	COG0521	Mo-molybdopterin cofactor biosynthetic process
Xcc3_34340	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
Xcc3_34410	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
Xcc3_34420	COG1404	Belongs to the peptidase S8 family
Xcc3_34430	COG1404	Belongs to the peptidase S8 family
Xcc3_34440	COG1404	Belongs to the peptidase S8 family
Xcc3_34450	COG1404	Belongs to the peptidase S8 family
Xcc3_34460	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
Xcc3_34570	COG0778	Nitroreductase
Xcc3_34580	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
Xcc3_34580	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
Xcc3_34620	COG2890	protein-(glutamine-N5) methyltransferase activity
Xcc3_34640	COG3634	alkyl hydroperoxide reductase activity
Xcc3_34650	COG0583	DNA-binding transcription factor activity
Xcc3_34660	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
Xcc3_34710	COG2197	response regulator
Xcc3_34720	COG0784	Response regulator, receiver
Xcc3_34720	COG5002	protein histidine kinase activity
Xcc3_34720	COG2205	protein histidine kinase activity
Xcc3_34730	COG0745	RESPONSE REGULATOR receiver
Xcc3_34730	COG3706	GGDEF domain
Xcc3_34780	COG0697	spore germination
Xcc3_34840	COG3386	PFAM SMP-30 Gluconolaconase
Xcc3_34880	COG1024	Enoyl-CoA hydratase
Xcc3_34910	COG0318	PFAM AMP-dependent synthetase and ligase
Xcc3_34920	COG0583	DNA-binding transcription factor activity
Xcc3_34930	COG3384	dioxygenase
Xcc3_34990	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Xcc3_35000	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Xcc3_35020	COG2096	Adenosyltransferase
Xcc3_35030	COG0123	including yeast histone deacetylase and acetoin utilization protein
Xcc3_35090	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
Xcc3_35160	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
Xcc3_35180	COG0642	Histidine kinase
Xcc3_35210	COG4181	ATPase activity
Xcc3_35230	COG2175	clavaminate synthase activity
Xcc3_35250	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
Xcc3_35260	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Xcc3_35300	COG4771	TonB-dependent receptor
Xcc3_35320	COG0667	Aldo Keto reductase
Xcc3_35330	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
Xcc3_35350	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
Xcc3_35540	COG0366	Alpha amylase catalytic
Xcc3_35600	COG1028	Short-chain dehydrogenase reductase Sdr
Xcc3_35600	COG3321	synthase
Xcc3_35600	COG0604	alcohol dehydrogenase
Xcc3_35630	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
Xcc3_35660	COG0494	nUDIX hydrolase
Xcc3_35690	COG0739	heme binding
Xcc3_35740	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
Xcc3_35750	COG1181	Belongs to the D-alanine--D-alanine ligase family
Xcc3_35800	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
Xcc3_35830	COG3116	cell division
Xcc3_35850	COG2001	Belongs to the MraZ family
Xcc3_35920	COG1988	membrane-bound metal-dependent
Xcc3_35930	COG0277	FAD linked oxidase domain protein
Xcc3_35940	COG0277	FAD linked oxidase domain protein
Xcc3_35960	COG0745	RESPONSE REGULATOR receiver
Xcc3_35970	COG2205	protein histidine kinase activity
Xcc3_35990	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
Xcc3_36000	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
Xcc3_36010	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
Xcc3_36030	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
Xcc3_36100	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
Xcc3_36100	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
Xcc3_36150	COG0488	(ABC) transporter
Xcc3_36160	COG0488	(ABC) transporter
Xcc3_36170	COG0242	peptide deformylase activity
Xcc3_36180	COG1393	Belongs to the ArsC family
Xcc3_36210	COG0457	Tetratricopeptide repeat
Xcc3_36310	COG2188	Transcriptional regulator
Xcc3_36340	COG1450	Type ii and iii secretion system protein
Xcc3_36370	COG3166	PFAM Fimbrial assembly family protein
Xcc3_36380	COG3156	type II secretion system protein K
Xcc3_36390	COG4795	General secretion pathway protein
Xcc3_36400	COG2165	general secretion pathway protein
Xcc3_36410	COG4970	Tfp pilus assembly protein FimT
Xcc3_36420	COG2165	general secretion pathway protein
Xcc3_36430	COG1459	type II secretion system
Xcc3_36440	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
Xcc3_36450	COG1404	Belongs to the peptidase S8 family
Xcc3_36470	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
Xcc3_36470	COG0047	phosphoribosylformylglycinamidine synthase activity
Xcc3_36480	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
Xcc3_36490	COG4974	Belongs to the 'phage' integrase family
Xcc3_36520	COG0795	lipopolysaccharide-transporting ATPase activity
Xcc3_36630	COG1183	phosphatidylcholine synthase activity
Xcc3_36690	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
Xcc3_36700	COG1127	ABC transporter
Xcc3_36710	COG3218	ABC-type transport auxiliary lipoprotein component
Xcc3_36710	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
Xcc3_36780	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
Xcc3_36850	COG2086	electron transfer activity
Xcc3_36870	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
Xcc3_36870	COG0662	Cupin 2, conserved barrel domain protein
Xcc3_36880	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Xcc3_36890	COG0463	Glycosyl transferase, family 2
Xcc3_36940	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
Xcc3_36980	COG0438	transferase activity, transferring glycosyl groups
Xcc3_37040	COG0626	cystathionine gamma-synthase activity
Xcc3_37100	COG0625	glutathione transferase activity
Xcc3_37120	COG0513	Belongs to the DEAD box helicase family
Xcc3_37130	COG0720	synthase
Xcc3_37160	COG1956	GAF domain-containing protein
Xcc3_37220	COG0339	signal peptide processing
Xcc3_37230	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
Xcc3_37330	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
Xcc3_37350	COG1136	(ABC) transporter
Xcc3_37370	COG1136	(ABC) transporter
Xcc3_37370	COG0577	efflux transmembrane transporter activity
Xcc3_37390	COG2204	response regulator
Xcc3_37410	COG2963	transposase activity
Xcc3_37420	COG2801	Transposase and inactivated derivatives
Xcc3_37490	COG0047	phosphoribosylformylglycinamidine synthase activity
Xcc3_37490	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
Xcc3_37550	COG0356	it plays a direct role in the translocation of protons across the membrane
Xcc3_37580	COG1228	amidohydrolase
Xcc3_37590	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Xcc3_37610	COG0508	dehydrogenase complex catalyzes the overall conversion of
Xcc3_37690	COG2011	ABC-type metal ion transport system permease component
Xcc3_37710	COG0697	spore germination
Xcc3_37720	COG1666	GTP binding
Xcc3_37770	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
Xcc3_37780	COG1187	pseudouridine synthase activity
Xcc3_37790	COG2813	Specifically methylates the guanine in position
Xcc3_37830	COG5002	protein histidine kinase activity
Xcc3_37890	COG1522	sequence-specific DNA binding
Xcc3_37990	COG0842	Transport permease protein
Xcc3_38000	COG1131	(ABC) transporter
Xcc3_38010	COG0025	NhaP-type Na H and K H
Xcc3_38020	COG3795	YCII-related domain
Xcc3_38030	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
Xcc3_38040	COG1573	uracil-dna glycosylase
Xcc3_38070	COG3384	dioxygenase
Xcc3_38080	COG0583	DNA-binding transcription factor activity
Xcc3_38100	COG0667	Aldo Keto reductase
Xcc3_38120	COG3590	peptidase
Xcc3_38150	COG0531	amino acid
Xcc3_38180	COG2972	Histidine kinase
Xcc3_38210	COG1335	isochorismatase
Xcc3_38220	COG3685	Protein conserved in bacteria
Xcc3_38230	COG3685	Protein conserved in bacteria
Xcc3_38240	COG3546	catalase activity
Xcc3_38300	COG2204	response regulator
Xcc3_38320	COG1271	oxidase subunit
Xcc3_38330	COG1294	oxidase, subunit
Xcc3_38360	COG1028	Short-chain dehydrogenase reductase Sdr
Xcc3_38370	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
Xcc3_38410	COG1132	(ABC) transporter
Xcc3_38440	COG1063	alcohol dehydrogenase
Xcc3_38500	COG1529	Aldehyde oxidase and xanthine dehydrogenase
Xcc3_38630	COG0251	oxidation-reduction process
Xcc3_38670	COG0667	Aldo Keto reductase
Xcc3_38680	COG0583	DNA-binding transcription factor activity
Xcc3_38720	COG5001	Diguanylate cyclase
Xcc3_38720	COG4251	negative regulation of phosphorylation
Xcc3_38720	COG2203	Gaf domain
Xcc3_38720	COG3706	GGDEF domain
Xcc3_38750	COG2963	transposase activity
Xcc3_38780	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
Xcc3_38800	COG1560	Kdo2-lipid A biosynthetic process
Xcc3_38820	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
Xcc3_38890	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
Xcc3_38890	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
Xcc3_38910	COG0242	peptide deformylase activity
Xcc3_38920	COG1652	LysM domain
Xcc3_38930	COG0758	DNA mediated transformation
Xcc3_38970	COG1754	DNA topoisomerase type I activity
Xcc3_38970	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Xcc3_39010	COG4251	negative regulation of phosphorylation
Xcc3_39010	COG3706	GGDEF domain
Xcc3_39010	COG2203	Gaf domain
Xcc3_39010	COG5001	Diguanylate cyclase
Xcc3_39020	COG1028	Short-chain dehydrogenase reductase Sdr
Xcc3_39040	COG0616	signal peptide processing
Xcc3_39050	COG0534	Mate efflux family protein
Xcc3_39080	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
Xcc3_39120	COG1252	NADH dehydrogenase
Xcc3_39130	COG2860	membrane
Xcc3_39140	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
Xcc3_39160	COG2201	protein-glutamate methylesterase activity
Xcc3_39170	COG2177	Part of the ABC transporter FtsEX involved in
Xcc3_39180	COG2884	Cell division ATP-binding protein ftsE
Xcc3_39200	COG3118	belongs to the thioredoxin family
Xcc3_39220	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
Xcc3_39320	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Xcc3_39370	COG4941	Belongs to the sigma-70 factor family
Xcc3_39380	COG5383	Protein conserved in bacteria
Xcc3_39470	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
Xcc3_39480	COG3409	Peptidoglycan-binding domain 1 protein
Xcc3_39510	COG3023	N-Acetylmuramoyl-L-alanine amidase
Xcc3_39530	COG4948	Mandelate Racemase Muconate Lactonizing
Xcc3_39550	COG0531	amino acid
Xcc3_39580	COG4682	membrane
Xcc3_39590	COG2133	pyrroloquinoline quinone binding
Xcc3_39610	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
Xcc3_39630	COG0828	Belongs to the bacterial ribosomal protein bS21 family
Xcc3_39640	COG1610	YqeY-like protein
Xcc3_39650	COG1295	ribonuclease BN
Xcc3_39660	COG0358	DNA primase activity
Xcc3_39770	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
Xcc3_39800	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
Xcc3_39830	COG2963	transposase activity
Xcc3_39840	COG2801	Transposase and inactivated derivatives
Xcc3_39860	COG0739	heme binding
Xcc3_39900	COG0708	Exodeoxyribonuclease III
Xcc3_39930	COG1192	Involved in chromosome partitioning
Xcc3_39940	COG1475	DNA binding
Xcc3_39980	COG0463	Glycosyl transferase, family 2
Xcc3_40030	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
Xcc3_40040	COG2003	Belongs to the UPF0758 family
Xcc3_40080	COG4221	oxidoreductase activity
Xcc3_40100	COG2755	lipolytic protein G-D-S-L family
Xcc3_40100	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
Xcc3_40130	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
Xcc3_40140	COG1166	arginine decarboxylase activity
Xcc3_40190	COG2960	long-chain fatty acid transporting porin activity
Xcc3_40200	COG0606	chelatase, subunit chli
Xcc3_40230	COG4943	cyclic-guanylate-specific phosphodiesterase activity
Xcc3_40290	COG1690	Belongs to the RtcB family
Xcc3_40370	COG1090	epimerase
Xcc3_40400	COG0745	RESPONSE REGULATOR receiver
Xcc3_40410	COG0642	Histidine kinase
Xcc3_40450	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Xcc3_40500	COG1011	Hydrolase
Xcc3_40510	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
Xcc3_40550	COG2197	response regulator
Xcc3_40560	COG4585	Histidine kinase
Xcc3_40580	COG1136	(ABC) transporter
Xcc3_40630	COG0697	spore germination
Xcc3_40670	COG0180	Tryptophanyl-tRNA synthetase
Xcc3_40680	COG3237	CsbD-like
Xcc3_40830	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
Xcc3_40830	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
Xcc3_40880	COG2205	protein histidine kinase activity
Xcc3_40890	COG0745	RESPONSE REGULATOR receiver
Xcc3_40910	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
Xcc3_40960	COG1199	ATP-dependent helicase activity
Xcc3_41090	COG0625	glutathione transferase activity
Xcc3_41160	COG4555	ABC transporter
Xcc3_41180	COG1476	TRANSCRIPTIONal
Xcc3_41220	COG1230	cation diffusion facilitator family transporter
Xcc3_41240	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
Xcc3_41250	COG1131	(ABC) transporter
Xcc3_41260	COG0842	Transport permease protein
Xcc3_41280	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
Xcc3_41310	COG1607	acyl-coa hydrolase
Xcc3_41340	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Xcc3_41350	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Xcc3_41370	COG1042	CoA-binding domain protein
Xcc3_41370	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
Xcc3_41370	COG0045	succinate-CoA ligase (ADP-forming) activity
Xcc3_41380	COG1042	CoA-binding domain protein
Xcc3_41380	COG0045	succinate-CoA ligase (ADP-forming) activity
Xcc3_41380	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
Xcc3_41400	COG2239	Acts as a magnesium transporter
Xcc3_41440	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
Xcc3_41450	COG3387	PFAM Glycoside hydrolase 15-related
Xcc3_41490	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
Xcc3_41510	COG0463	Glycosyl transferase, family 2
Xcc3_41550	COG1028	Short-chain dehydrogenase reductase Sdr
Xcc3_41610	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
Xcc3_41640	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
Xcc3_41780	COG0210	DNA helicase
Xcc3_41800	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Xcc3_41810	COG0583	DNA-binding transcription factor activity
Xcc3_41820	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
Xcc3_41840	COG2963	transposase activity
Xcc3_41860	COG2159	amidohydrolase
Xcc3_41870	COG2159	amidohydrolase
Xcc3_41880	COG0267	Belongs to the bacterial ribosomal protein bL33 family
Xcc3_41890	COG0227	Belongs to the bacterial ribosomal protein bL28 family
Xcc3_42010	COG2091	lysine biosynthetic process via aminoadipic acid
Xcc3_42140	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Xcc3_42160	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Xcc3_42170	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Xcc3_42180	COG3162	membrane
Xcc3_42260	COG3507	Belongs to the glycosyl hydrolase 43 family
Xcc3_42290	COG1028	Short-chain dehydrogenase reductase Sdr
Xcc3_42300	COG0179	Fumarylacetoacetate (FAA) hydrolase
Xcc3_42310	COG4948	Mandelate Racemase Muconate Lactonizing
Xcc3_42320	COG3254	rhamnose metabolic process
Xcc3_42330	COG0738	Major facilitator superfamily
Xcc3_42340	COG1414	Transcriptional regulator
Xcc3_42380	COG0784	Response regulator, receiver
Xcc3_42380	COG2205	protein histidine kinase activity
Xcc3_42390	COG3459	Glycosyltransferase 36 associated
Xcc3_42400	COG2211	Major facilitator Superfamily
Xcc3_42410	COG3265	gluconokinase activity
Xcc3_42420	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
Xcc3_42470	COG2911	Protein conserved in bacteria
Xcc3_42490	COG0729	surface antigen
Xcc3_42530	COG0518	GMP synthase (glutamine-hydrolyzing) activity
Xcc3_42530	COG0519	Catalyzes the synthesis of GMP from XMP
Xcc3_42550	COG0805	protein transport
Xcc3_42590	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
Xcc3_42680	COG3661	Belongs to the glycosyl hydrolase 67 family
Xcc3_42700	COG4948	Mandelate Racemase Muconate Lactonizing
Xcc3_42720	COG1472	Belongs to the glycosyl hydrolase 3 family
Xcc3_42730	COG0246	Mannitol dehydrogenase
Xcc3_42800	COG3386	PFAM SMP-30 Gluconolaconase
Xcc3_42820	COG3250	beta-galactosidase activity
Xcc3_42840	COG3693	PFAM glycoside hydrolase, family 10
Xcc3_42870	COG2211	Major facilitator Superfamily
Xcc3_42980	COG2937	Belongs to the GPAT DAPAT family
Xcc3_43050	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
Xcc3_43060	COG3132	Protein of unknown function, DUF480
Xcc3_43100	COG0210	DNA helicase
Xcc3_43110	COG2801	Transposase and inactivated derivatives
Xcc3_43140	COG2963	transposase activity
Xcc3_43220	COG3135	benzoate transporter
Xcc3_43260	COG0676	glucose-6-phosphate 1-epimerase activity
Xcc3_43280	COG3012	SEC-C Motif Domain Protein
Xcc3_43300	COG0730	response to heat
Xcc3_43360	COG0302	gtp cyclohydrolase
Xcc3_43390	COG1566	PFAM secretion protein HlyD family protein
Xcc3_43410	COG1289	transmembrane transporter activity
Xcc3_43420	COG0477	Major facilitator Superfamily
Xcc3_43440	COG0583	DNA-binding transcription factor activity
Xcc3_43450	COG4221	oxidoreductase activity
Xcc3_43460	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Xcc3_43540	COG3039	Transposase
Xcc3_43560	COG3039	Transposase
Xcc3_43620	COG0564	pseudouridine synthase activity
Xcc3_43640	COG1192	Involved in chromosome partitioning
Xcc3_43740	COG1074	ATP-dependent DNA helicase activity
Xcc3_43750	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
Xcc3_43830	COG1127	ABC transporter
Xcc3_43840	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
Xcc3_43850	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
Xcc3_43880	COG2853	Lipoprotein
Xcc3_43900	COG0386	Belongs to the glutathione peroxidase family
Xcc3_43920	COG1322	Protein conserved in bacteria
Xcc3_43930	COG0604	alcohol dehydrogenase
Xcc3_43940	COG0583	DNA-binding transcription factor activity
Xcc3_43970	COG0531	amino acid
Xcc3_43990	COG4206	TonB-dependent receptor
Xcc3_44020	COG3835	regulator
Xcc3_44030	COG1929	Belongs to the glycerate kinase type-1 family
Xcc3_44040	COG2271	Major facilitator Superfamily
Xcc3_44080	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
Xcc3_44090	COG0861	Integral membrane protein TerC family
Xcc3_44110	COG0584	glycerophosphoryl diester phosphodiesterase
Xcc3_44130	COG0671	phosphoesterase, PA-phosphatase related
Xcc3_44180	COG0726	polysaccharide deacetylase
Xcc3_44190	COG0706	membrane insertase activity
Xcc3_44210	COG0230	Belongs to the bacterial ribosomal protein bL34 family