locus-tag class description LR085_00005 PF00308 Bacterial dnaA protein LR085_00005 PF08299 Bacterial dnaA protein helix-turn-helix LR085_00005 PF11638 DnaA N-terminal domain LR085_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LR085_00010 PF02767 DNA polymerase III beta subunit, central domain LR085_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LR085_00020 PF01751 Toprim domain LR085_00020 PF18053 DNA gyrase B subunit insert domain LR085_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_00020 PF00204 DNA gyrase B LR085_00020 PF00986 DNA gyrase B subunit, carboxyl terminus LR085_00030 PF01435 Peptidase family M48 LR085_00040 PF03544 Gram-negative bacterial TonB protein C-terminal LR085_00045 PF01618 MotA/TolQ/ExbB proton channel family LR085_00050 PF02472 Biopolymer transport protein ExbD/TolR LR085_00055 PF02472 Biopolymer transport protein ExbD/TolR LR085_00065 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LR085_00075 PF13396 Phospholipase_D-nuclease N-terminal LR085_00075 PF13091 PLD-like domain LR085_00080 PF04055 Radical SAM superfamily LR085_00090 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LR085_00105 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LR085_00105 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LR085_00105 PF01842 ACT domain LR085_00110 PF13180 PDZ domain LR085_00110 PF03572 Peptidase family S41 LR085_00115 PF01551 Peptidase family M23 LR085_00125 PF04389 Peptidase family M28 LR085_00140 PF00150 Cellulase (glycosyl hydrolase family 5) LR085_00145 PF00150 Cellulase (glycosyl hydrolase family 5) LR085_00150 PF00150 Cellulase (glycosyl hydrolase family 5) LR085_00155 PF08240 Alcohol dehydrogenase GroES-like domain LR085_00155 PF00107 Zinc-binding dehydrogenase LR085_00170 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LR085_00170 PF07992 Pyridine nucleotide-disulphide oxidoreductase LR085_00175 PF01493 GXGXG motif LR085_00175 PF01645 Conserved region in glutamate synthase LR085_00175 PF00310 Glutamine amidotransferases class-II LR085_00175 PF04898 Glutamate synthase central domain LR085_00190 PF00398 Ribosomal RNA adenine dimethylase LR085_00200 PF05726 Pirin C-terminal cupin domain LR085_00200 PF02678 Pirin LR085_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_00210 PF03466 LysR substrate binding domain LR085_00225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_00225 PF03466 LysR substrate binding domain LR085_00285 PF00270 DEAD/DEAH box helicase LR085_00285 PF09369 Domain of unknown function (DUF1998) LR085_00285 PF00271 Helicase conserved C-terminal domain LR085_00290 PF02661 Fic/DOC family LR085_00290 PF13784 Fic/DOC family N-terminal LR085_00295 PF03006 Haemolysin-III related LR085_00365 PF01872 RibD C-terminal domain LR085_00370 PF05532 CsbD-like LR085_00375 PF00072 Response regulator receiver domain LR085_00375 PF00196 Bacterial regulatory proteins, luxR family LR085_00400 PF02868 Thermolysin metallopeptidase, alpha-helical domain LR085_00400 PF01447 Thermolysin metallopeptidase, catalytic domain LR085_00400 PF16485 Protealysin propeptide LR085_00410 PF00293 NUDIX domain LR085_00410 PF13344 Haloacid dehalogenase-like hydrolase LR085_00415 PF01594 AI-2E family transporter LR085_00420 PF07859 alpha/beta hydrolase fold LR085_00430 PF00085 Thioredoxin LR085_00435 PF08946 Osmosensory transporter coiled coil LR085_00435 PF00083 Sugar (and other) transporter LR085_00475 PF07726 ATPase family associated with various cellular activities (AAA) LR085_00475 PF17863 AAA lid domain LR085_00505 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LR085_00510 PF00155 Aminotransferase class I and II LR085_00515 PF00593 TonB dependent receptor LR085_00515 PF07715 TonB-dependent Receptor Plug Domain LR085_00530 PF00171 Aldehyde dehydrogenase family LR085_00550 PF02735 Ku70/Ku80 beta-barrel domain LR085_00555 PF01068 ATP dependent DNA ligase domain LR085_00555 PF04679 ATP dependent DNA ligase C terminal region LR085_00555 PF13298 DNA polymerase Ligase (LigD) LR085_00560 PF01070 FMN-dependent dehydrogenase LR085_00585 PF18500 CadC C-terminal domain 1 LR085_00585 PF00486 Transcriptional regulatory protein, C terminal LR085_00590 PF07055 Enoyl reductase FAD binding domain LR085_00590 PF12241 Trans-2-enoyl-CoA reductase catalytic region LR085_00590 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LR085_00605 PF00294 pfkB family carbohydrate kinase LR085_00620 PF01095 Pectinesterase LR085_00695 PF16657 Maltogenic Amylase, C-terminal domain LR085_00695 PF00128 Alpha amylase, catalytic domain LR085_00700 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LR085_00700 PF00128 Alpha amylase, catalytic domain LR085_00700 PF02806 Alpha amylase, C-terminal all-beta domain LR085_00730 PF00248 Aldo/keto reductase family LR085_00735 PF13472 GDSL-like Lipase/Acylhydrolase family LR085_00740 PF00135 Carboxylesterase family LR085_00745 PF13472 GDSL-like Lipase/Acylhydrolase family LR085_00745 PF07859 alpha/beta hydrolase fold LR085_00755 PF03480 Bacterial extracellular solute-binding protein, family 7 LR085_00765 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LR085_00770 PF04616 Glycosyl hydrolases family 43 LR085_00770 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain LR085_00775 PF00356 Bacterial regulatory proteins, lacI family LR085_00780 PF04962 KduI/IolB family LR085_00795 PF00657 GDSL-like Lipase/Acylhydrolase LR085_00805 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LR085_00810 PF01037 Lrp/AsnC ligand binding domain LR085_00820 PF07715 TonB-dependent Receptor Plug Domain LR085_00820 PF07660 Secretin and TonB N terminus short domain LR085_00820 PF00593 TonB dependent receptor LR085_00825 PF01734 Patatin-like phospholipase LR085_00835 PF00005 ABC transporter LR085_00850 PF00005 ABC transporter LR085_00850 PF00571 CBS domain LR085_00855 PF00528 Binding-protein-dependent transport system inner membrane component LR085_00865 PF03781 Sulfatase-modifying factor enzyme 1 LR085_00865 PF12867 DinB superfamily LR085_00870 PF10017 Histidine-specific methyltransferase, SAM-dependent LR085_00900 PF01883 Iron-sulfur cluster assembly protein LR085_00900 PF10609 NUBPL iron-transfer P-loop NTPase LR085_00905 PF00300 Histidine phosphatase superfamily (branch 1) LR085_00910 PF04264 YceI-like domain LR085_00915 PF13091 PLD-like domain LR085_00920 PF03061 Thioesterase superfamily LR085_00940 PF01161 Phosphatidylethanolamine-binding protein LR085_00950 PF02673 Bacitracin resistance protein BacA LR085_00955 PF00120 Glutamine synthetase, catalytic domain LR085_00955 PF03951 Glutamine synthetase, beta-Grasp domain LR085_00960 PF00543 Nitrogen regulatory protein P-II LR085_00965 PF00909 Ammonium Transporter Family LR085_00970 PF00989 PAS fold LR085_00970 PF00512 His Kinase A (phospho-acceptor) domain LR085_00970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_00975 PF00158 Sigma-54 interaction domain LR085_00975 PF02954 Bacterial regulatory protein, Fis family LR085_00975 PF00072 Response regulator receiver domain LR085_00985 PF00080 Copper/zinc superoxide dismutase (SODC) LR085_00990 PF00080 Copper/zinc superoxide dismutase (SODC) LR085_01005 PF02803 Thiolase, C-terminal domain LR085_01005 PF00108 Thiolase, N-terminal domain LR085_01045 PF00581 Rhodanese-like domain LR085_01050 PF02556 Preprotein translocase subunit SecB LR085_01055 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LR085_01055 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LR085_01065 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LR085_01065 PF00205 Thiamine pyrophosphate enzyme, central domain LR085_01065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LR085_01070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_01070 PF00512 His Kinase A (phospho-acceptor) domain LR085_01075 PF02954 Bacterial regulatory protein, Fis family LR085_01075 PF00072 Response regulator receiver domain LR085_01075 PF00158 Sigma-54 interaction domain LR085_01090 PF07690 Major Facilitator Superfamily LR085_01095 PF00588 SpoU rRNA Methylase family LR085_01110 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LR085_01110 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LR085_01115 PF02661 Fic/DOC family LR085_01115 PF13784 Fic/DOC family N-terminal LR085_01120 PF00561 alpha/beta hydrolase fold LR085_01125 PF03692 Putative zinc- or iron-chelating domain LR085_01130 PF00501 AMP-binding enzyme LR085_01155 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family LR085_01170 PF07478 D-ala D-ala ligase C-terminus LR085_01170 PF01820 D-ala D-ala ligase N-terminus LR085_01180 PF03109 ABC1 family LR085_01185 PF00849 RNA pseudouridylate synthase LR085_01195 PF00472 RF-1 domain LR085_01210 PF01432 Peptidase family M3 LR085_01220 PF12706 Beta-lactamase superfamily domain LR085_01235 PF12833 Helix-turn-helix domain LR085_01240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_01240 PF03466 LysR substrate binding domain LR085_01245 PF01274 Malate synthase LR085_01250 PF00463 Isocitrate lyase family LR085_01255 PF00990 Diguanylate cyclase, GGDEF domain LR085_01275 PF00326 Prolyl oligopeptidase family LR085_01280 PF18140 Propionyl-coenzyme A carboxylase BT domain LR085_01280 PF00289 Biotin carboxylase, N-terminal domain LR085_01280 PF00364 Biotin-requiring enzyme LR085_01280 PF02785 Biotin carboxylase C-terminal domain LR085_01280 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LR085_01285 PF01039 Carboxyl transferase domain LR085_01290 PF02770 Acyl-CoA dehydrogenase, middle domain LR085_01290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LR085_01290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LR085_01330 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LR085_01345 PF02492 CobW/HypB/UreG, nucleotide-binding domain LR085_01345 PF07683 Cobalamin synthesis protein cobW C-terminal domain LR085_01365 PF03969 AFG1-like ATPase LR085_01375 PF01047 MarR family LR085_01380 PF02566 OsmC-like protein LR085_01390 PF07859 alpha/beta hydrolase fold LR085_01410 PF00248 Aldo/keto reductase family LR085_01415 PF00107 Zinc-binding dehydrogenase LR085_01415 PF16884 N-terminal domain of oxidoreductase LR085_01420 PF00248 Aldo/keto reductase family LR085_01430 PF00849 RNA pseudouridylate synthase LR085_01440 PF00270 DEAD/DEAH box helicase LR085_01440 PF04408 Helicase associated domain (HA2) LR085_01440 PF00271 Helicase conserved C-terminal domain LR085_01440 PF08482 ATP-dependent helicase C-terminal LR085_01445 PF02203 Tar ligand binding domain homologue LR085_01445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_01445 PF00672 HAMP domain LR085_01450 PF07308 Protein of unknown function (DUF1456) LR085_01455 PF00576 HIUase/Transthyretin family LR085_01460 PF13454 FAD-NAD(P)-binding LR085_01480 PF00266 Aminotransferase class-V LR085_01485 PF07687 Peptidase dimerisation domain LR085_01485 PF01546 Peptidase family M20/M25/M40 LR085_01490 PF03466 LysR substrate binding domain LR085_01490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_01500 PF07690 Major Facilitator Superfamily LR085_01510 PF13091 PLD-like domain LR085_01520 PF01425 Amidase LR085_01525 PF01156 Inosine-uridine preferring nucleoside hydrolase LR085_01535 PF00860 Permease family LR085_01540 PF00111 2Fe-2S iron-sulfur cluster binding domain LR085_01545 PF00355 Rieske [2Fe-2S] domain LR085_01550 PF03466 LysR substrate binding domain LR085_01550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_01555 PF01026 TatD related DNase LR085_01565 PF03466 LysR substrate binding domain LR085_01565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_01570 PF07690 Major Facilitator Superfamily LR085_01590 PF02146 Sir2 family LR085_01595 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LR085_01600 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LR085_01600 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LR085_01610 PF00551 Formyl transferase LR085_01620 PF00106 short chain dehydrogenase LR085_01630 PF02219 Methylenetetrahydrofolate reductase LR085_01635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_01635 PF03466 LysR substrate binding domain LR085_01640 PF03358 NADPH-dependent FMN reductase LR085_01650 PF08267 Cobalamin-independent synthase, N-terminal domain LR085_01650 PF01717 Cobalamin-independent synthase, Catalytic domain LR085_01665 PF05368 NmrA-like family LR085_01670 PF01638 HxlR-like helix-turn-helix LR085_01680 PF00672 HAMP domain LR085_01680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_01765 PF13495 Phage integrase, N-terminal SAM-like domain LR085_01765 PF00589 Phage integrase family LR085_01775 PF00920 Dehydratase family LR085_01785 PF03692 Putative zinc- or iron-chelating domain LR085_01795 PF00132 Bacterial transferase hexapeptide (six repeats) LR085_01805 PF07690 Major Facilitator Superfamily LR085_01810 PF11871 Domain of unknown function (DUF3391) LR085_01810 PF01966 HD domain LR085_01830 PF00171 Aldehyde dehydrogenase family LR085_01840 PF01494 FAD binding domain LR085_01850 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LR085_01850 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LR085_01860 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LR085_01860 PF01266 FAD dependent oxidoreductase LR085_01865 PF08220 DeoR-like helix-turn-helix domain LR085_01865 PF00455 DeoR C terminal sensor domain LR085_01870 PF00970 Oxidoreductase FAD-binding domain LR085_01870 PF00111 2Fe-2S iron-sulfur cluster binding domain LR085_01875 PF00355 Rieske [2Fe-2S] domain LR085_01880 PF01144 Coenzyme A transferase LR085_01885 PF01144 Coenzyme A transferase LR085_01890 PF00108 Thiolase, N-terminal domain LR085_01890 PF02803 Thiolase, C-terminal domain LR085_01895 PF00775 Dioxygenase LR085_01895 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal LR085_01900 PF00775 Dioxygenase LR085_01900 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal LR085_01905 PF00206 Lyase LR085_01905 PF10397 Adenylosuccinate lyase C-terminus LR085_01910 PF12146 Serine aminopeptidase, S33 LR085_01915 PF02627 Carboxymuconolactone decarboxylase family LR085_01925 PF09339 IclR helix-turn-helix domain LR085_01925 PF01614 Bacterial transcriptional regulator LR085_01935 PF07859 alpha/beta hydrolase fold LR085_01940 PF10677 Protein of unknown function (DUF2490) LR085_01945 PF13932 GidA associated domain LR085_01945 PF01134 Glucose inhibited division protein A LR085_01955 PF00291 Pyridoxal-phosphate dependent enzyme LR085_01975 PF13649 Methyltransferase domain LR085_01985 PF12697 Alpha/beta hydrolase family LR085_01995 PF00155 Aminotransferase class I and II LR085_02000 PF04055 Radical SAM superfamily LR085_02000 PF06968 Biotin and Thiamin Synthesis associated domain LR085_02010 PF01040 UbiA prenyltransferase family LR085_02020 PF13356 Arm DNA-binding domain LR085_02020 PF00589 Phage integrase family LR085_02030 PF00593 TonB dependent receptor LR085_02030 PF07715 TonB-dependent Receptor Plug Domain LR085_02035 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LR085_02035 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LR085_02050 PF07715 TonB-dependent Receptor Plug Domain LR085_02050 PF00593 TonB dependent receptor LR085_02070 PF00924 Mechanosensitive ion channel LR085_02070 PF12795 Mechanosensitive ion channel porin domain LR085_02070 PF12794 Mechanosensitive ion channel inner membrane domain 1 LR085_02075 PF00884 Sulfatase LR085_02085 PF03109 ABC1 family LR085_02090 PF05661 Protein of unknown function (DUF808) LR085_02095 PF02638 Glycosyl hydrolase-like 10 LR085_02100 PF00990 Diguanylate cyclase, GGDEF domain LR085_02105 PF08323 Starch synthase catalytic domain LR085_02105 PF00534 Glycosyl transferases group 1 LR085_02110 PF02806 Alpha amylase, C-terminal all-beta domain LR085_02110 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LR085_02110 PF00128 Alpha amylase, catalytic domain LR085_02115 PF00128 Alpha amylase, catalytic domain LR085_02115 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LR085_02115 PF11941 Domain of unknown function (DUF3459) LR085_02120 PF02446 4-alpha-glucanotransferase LR085_02125 PF00128 Alpha amylase, catalytic domain LR085_02135 PF00128 Alpha amylase, catalytic domain LR085_02135 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LR085_02140 PF13460 NAD(P)H-binding LR085_02155 PF06903 VirK protein LR085_02160 PF02321 Outer membrane efflux protein LR085_02165 PF00440 Bacterial regulatory proteins, tetR family LR085_02190 PF00270 DEAD/DEAH box helicase LR085_02190 PF00271 Helicase conserved C-terminal domain LR085_02200 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LR085_02200 PF00364 Biotin-requiring enzyme LR085_02200 PF02817 e3 binding domain LR085_02210 PF02780 Transketolase, C-terminal domain LR085_02210 PF02779 Transketolase, pyrimidine binding domain LR085_02215 PF00676 Dehydrogenase E1 component LR085_02225 PF03301 Tryptophan 2,3-dioxygenase LR085_02230 PF00854 POT family LR085_02240 PF01047 MarR family LR085_02245 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LR085_02250 PF04480 Protein of unknown function (DUF559) LR085_02255 PF04209 homogentisate 1,2-dioxygenase LR085_02275 PF03334 Na+/H+ antiporter subunit LR085_02280 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LR085_02290 PF00361 Proton-conducting membrane transporter LR085_02295 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LR085_02300 PF00361 Proton-conducting membrane transporter LR085_02300 PF13244 Domain of unknown function (DUF4040) LR085_02300 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LR085_02300 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LR085_02340 PF01259 SAICAR synthetase LR085_02345 PF00684 DnaJ central domain LR085_02345 PF00226 DnaJ domain LR085_02345 PF01556 DnaJ C terminal domain LR085_02355 PF00834 Ribulose-phosphate 3 epimerase family LR085_02365 PF00781 Diacylglycerol kinase catalytic domain LR085_02370 PF04715 Anthranilate synthase component I, N terminal region LR085_02370 PF00425 chorismate binding enzyme LR085_02375 PF00155 Aminotransferase class I and II LR085_02385 PF00117 Glutamine amidotransferase class-I LR085_02390 PF01613 Flavin reductase like domain LR085_02395 PF02885 Glycosyl transferase family, helical bundle domain LR085_02395 PF00591 Glycosyl transferase family, a/b domain LR085_02400 PF00218 Indole-3-glycerol phosphate synthase LR085_02410 PF00325 Bacterial regulatory proteins, crp family LR085_02410 PF00027 Cyclic nucleotide-binding domain LR085_02415 PF02675 S-adenosylmethionine decarboxylase LR085_02420 PF00893 Small Multidrug Resistance protein LR085_02425 PF03232 Ubiquinone biosynthesis protein COQ7 LR085_02430 PF00572 Ribosomal protein L13 LR085_02435 PF00380 Ribosomal protein S9/S16 LR085_02450 PF00293 NUDIX domain LR085_02460 PF00210 Ferritin-like domain LR085_02465 PF00672 HAMP domain LR085_02465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_02465 PF00512 His Kinase A (phospho-acceptor) domain LR085_02465 PF01627 Hpt domain LR085_02465 PF00072 Response regulator receiver domain LR085_02465 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LR085_02470 PF00072 Response regulator receiver domain LR085_02470 PF00486 Transcriptional regulatory protein, C terminal LR085_02490 PF01521 Iron-sulphur cluster biosynthesis LR085_02495 PF00293 NUDIX domain LR085_02495 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain LR085_02495 PF09297 NADH pyrophosphatase zinc ribbon domain LR085_02500 PF17113 Regulatory signalling modulator protein AmpE LR085_02500 PF03186 CobD/Cbib protein LR085_02535 PF07690 Major Facilitator Superfamily LR085_02545 PF12805 FUSC-like inner membrane protein yccS LR085_02550 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LR085_02550 PF02843 Phosphoribosylglycinamide synthetase, C domain LR085_02550 PF02844 Phosphoribosylglycinamide synthetase, N domain LR085_02560 PF02142 MGS-like domain LR085_02560 PF01808 AICARFT/IMPCHase bienzyme LR085_02570 PF12146 Serine aminopeptidase, S33 LR085_02570 PF12147 Putative methyltransferase LR085_02575 PF00782 Dual specificity phosphatase, catalytic domain LR085_02610 PF00818 Ice nucleation protein repeat LR085_02610 PF00818 Ice nucleation protein repeat LR085_02615 PF02954 Bacterial regulatory protein, Fis family LR085_02625 PF01381 Helix-turn-helix LR085_02650 PF02785 Biotin carboxylase C-terminal domain LR085_02650 PF00289 Biotin carboxylase, N-terminal domain LR085_02650 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LR085_02660 PF00364 Biotin-requiring enzyme LR085_02665 PF01220 Dehydroquinase class II LR085_02670 PF11412 Disulphide bond corrector protein DsbC LR085_02670 PF02683 Cytochrome C biogenesis protein transmembrane region LR085_02675 PF03091 CutA1 divalent ion tolerance protein LR085_02680 PF04231 Endonuclease I LR085_02685 PF00166 Chaperonin 10 Kd subunit LR085_02690 PF00118 TCP-1/cpn60 chaperonin family LR085_02695 PF00176 SNF2 family N-terminal domain LR085_02695 PF00271 Helicase conserved C-terminal domain LR085_02700 PF00270 DEAD/DEAH box helicase LR085_02700 PF13749 Putative ATP-dependent DNA helicase recG C-terminal LR085_02700 PF17191 RecG wedge domain LR085_02710 PF01609 Transposase DDE domain LR085_02710 PF05598 Transposase domain (DUF772) LR085_02760 PF01609 Transposase DDE domain LR085_02760 PF05598 Transposase domain (DUF772) LR085_02765 PF00793 DAHP synthetase I family LR085_02775 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LR085_02775 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LR085_02790 PF08450 SMP-30/Gluconolactonase/LRE-like region LR085_02805 PF16220 Domain of unknown function (DUF4880) LR085_02805 PF04773 FecR protein LR085_02815 PF07660 Secretin and TonB N terminus short domain LR085_02815 PF07715 TonB-dependent Receptor Plug Domain LR085_02815 PF00593 TonB dependent receptor LR085_02835 PF08335 GlnD PII-uridylyltransferase LR085_02835 PF03710 Glutamate-ammonia ligase adenylyltransferase LR085_02850 PF02592 Putative vitamin uptake transporter LR085_02870 PF00881 Nitroreductase family LR085_02875 PF04264 YceI-like domain LR085_02885 PF13847 Methyltransferase domain LR085_02885 PF03551 Transcriptional regulator PadR-like family LR085_02890 PF16957 Malonate decarboxylase, alpha subunit, transporter LR085_02895 PF06857 Malonate decarboxylase delta subunit (MdcD) LR085_02900 PF01039 Carboxyl transferase domain LR085_02910 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG LR085_02915 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase LR085_02920 PF08659 KR domain LR085_02920 PF00550 Phosphopantetheine attachment site LR085_02920 PF00698 Acyl transferase domain LR085_02920 PF16197 Ketoacyl-synthetase C-terminal extension LR085_02920 PF00109 Beta-ketoacyl synthase, N-terminal domain LR085_02920 PF02801 Beta-ketoacyl synthase, C-terminal domain LR085_02965 PF07745 Glycosyl hydrolase family 53 LR085_02970 PF17831 Pyruvate dehydrogenase E1 component middle domain LR085_02970 PF00456 Transketolase, thiamine diphosphate binding domain LR085_02975 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LR085_03045 PF13409 Glutathione S-transferase, N-terminal domain LR085_03070 PF11838 ERAP1-like C-terminal domain LR085_03070 PF01433 Peptidase family M1 domain LR085_03105 PF03176 MMPL family LR085_03105 PF12823 Domain of unknown function (DUF3817) LR085_03115 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LR085_03115 PF00326 Prolyl oligopeptidase family LR085_03120 PF07759 Protein of unknown function (DUF1615) LR085_03125 PF00990 Diguanylate cyclase, GGDEF domain LR085_03130 PF02082 Transcriptional regulator LR085_03140 PF07992 Pyridine nucleotide-disulphide oxidoreductase LR085_03140 PF13192 Thioredoxin domain LR085_03170 PF00892 EamA-like transporter family LR085_03175 PF00497 Bacterial extracellular solute-binding proteins, family 3 LR085_03185 PF03330 Lytic transglycolase LR085_03190 PF00041 Fibronectin type III domain LR085_03190 PF00553 Cellulose binding domain LR085_03190 PF01341 Glycosyl hydrolases family 6 LR085_03200 PF00324 Amino acid permease LR085_03205 PF01544 CorA-like Mg2+ transporter protein LR085_03220 PF01204 Trehalase LR085_03230 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LR085_03230 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LR085_03230 PF06827 Zinc finger found in FPG and IleRS LR085_03265 PF00553 Cellulose binding domain LR085_03265 PF00150 Cellulase (glycosyl hydrolase family 5) LR085_03270 PF01740 STAS domain LR085_03270 PF00916 Sulfate permease family LR085_03275 PF00990 Diguanylate cyclase, GGDEF domain LR085_03280 PF00593 TonB dependent receptor LR085_03280 PF07660 Secretin and TonB N terminus short domain LR085_03280 PF07715 TonB-dependent Receptor Plug Domain LR085_03290 PF03600 Citrate transporter LR085_03290 PF02080 TrkA-C domain LR085_03305 PF07694 5TMR of 5TMR-LYT LR085_03305 PF06580 Histidine kinase LR085_03310 PF04397 LytTr DNA-binding domain LR085_03310 PF00072 Response regulator receiver domain LR085_03315 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LR085_03315 PF03900 Porphobilinogen deaminase, C-terminal domain LR085_03345 PF00326 Prolyl oligopeptidase family LR085_03345 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LR085_03360 PF00155 Aminotransferase class I and II LR085_03365 PF00326 Prolyl oligopeptidase family LR085_03365 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LR085_03370 PF04304 Protein of unknown function (DUF454) LR085_03380 PF01678 Diaminopimelate epimerase LR085_03390 PF02899 Phage integrase, N-terminal SAM-like domain LR085_03390 PF00589 Phage integrase family LR085_03395 PF00227 Proteasome subunit LR085_03400 PF00004 ATPase family associated with various cellular activities (AAA) LR085_03400 PF10431 C-terminal, D2-small domain, of ClpB protein LR085_03400 PF07724 AAA domain (Cdc48 subfamily) LR085_03415 PF13673 Acetyltransferase (GNAT) domain LR085_03420 PF13533 Biotin-lipoyl like LR085_03430 PF01209 ubiE/COQ5 methyltransferase family LR085_03435 PF03707 Bacterial signalling protein N terminal repeat LR085_03435 PF00563 EAL domain LR085_03435 PF00990 Diguanylate cyclase, GGDEF domain LR085_03440 PF01433 Peptidase family M1 domain LR085_03440 PF11838 ERAP1-like C-terminal domain LR085_03455 PF13360 PQQ-like domain LR085_03460 PF00497 Bacterial extracellular solute-binding proteins, family 3 LR085_03475 PF00107 Zinc-binding dehydrogenase LR085_03475 PF08240 Alcohol dehydrogenase GroES-like domain LR085_03480 PF07715 TonB-dependent Receptor Plug Domain LR085_03480 PF00593 TonB dependent receptor LR085_03480 PF07660 Secretin and TonB N terminus short domain LR085_03490 PF02954 Bacterial regulatory protein, Fis family LR085_03490 PF00158 Sigma-54 interaction domain LR085_03490 PF01590 GAF domain LR085_03495 PF00294 pfkB family carbohydrate kinase LR085_03510 PF04085 rod shape-determining protein MreC LR085_03520 PF03717 Penicillin-binding Protein dimerisation domain LR085_03520 PF00905 Penicillin binding protein transpeptidase domain LR085_03525 PF01098 Cell cycle protein LR085_03575 PF00295 Glycosyl hydrolases family 28 LR085_03580 PF13406 Transglycosylase SLT domain LR085_03585 PF03330 Lytic transglycolase LR085_03585 PF05036 Sporulation related domain LR085_03590 PF07943 Penicillin-binding protein 5, C-terminal domain LR085_03590 PF00768 D-alanyl-D-alanine carboxypeptidase LR085_03600 PF04359 Protein of unknown function (DUF493) LR085_03605 PF03099 Biotin/lipoate A/B protein ligase family LR085_03610 PF04055 Radical SAM superfamily LR085_03610 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LR085_03615 PF03572 Peptidase family S41 LR085_03615 PF17804 Tail specific protease N-terminal domain LR085_03615 PF11818 C-terminal domain of tail specific protease (DUF3340) LR085_03615 PF00595 PDZ domain LR085_03625 PF03466 LysR substrate binding domain LR085_03625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_03635 PF01467 Cytidylyltransferase-like LR085_03635 PF00293 NUDIX domain LR085_03670 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LR085_03670 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LR085_03675 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LR085_03675 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LR085_03680 PF04972 BON domain LR085_03685 PF00512 His Kinase A (phospho-acceptor) domain LR085_03685 PF08446 PAS fold LR085_03685 PF00360 Phytochrome region LR085_03685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_03685 PF01590 GAF domain LR085_03690 PF00072 Response regulator receiver domain LR085_03695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_03695 PF00512 His Kinase A (phospho-acceptor) domain LR085_03700 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LR085_03740 PF00263 Bacterial type II and III secretion system protein LR085_03740 PF03958 Bacterial type II/III secretion system short domain LR085_03745 PF00437 Type II/IV secretion system protein LR085_03750 PF00482 Type II secretion system (T2SS), protein F LR085_03755 PF07963 Prokaryotic N-terminal methylation motif LR085_03755 PF08334 Type II secretion system (T2SS), protein G LR085_03765 PF07963 Prokaryotic N-terminal methylation motif LR085_03765 PF02501 Type II secretion system (T2SS), protein I LR085_03770 PF11612 Type II secretion system (T2SS), protein J LR085_03770 PF07963 Prokaryotic N-terminal methylation motif LR085_03775 PF03934 Type II secretion system (T2SS), protein K LR085_03795 PF07702 UTRA domain LR085_03795 PF00392 Bacterial regulatory proteins, gntR family LR085_03800 PF07690 Major Facilitator Superfamily LR085_03805 PF00356 Bacterial regulatory proteins, lacI family LR085_03810 PF01380 SIS domain LR085_03815 PF01979 Amidohydrolase family LR085_03830 PF01966 HD domain LR085_03830 PF01743 Poly A polymerase head domain LR085_03830 PF12627 Probable RNA and SrmB- binding site of polymerase A LR085_03835 PF01464 Transglycosylase SLT domain LR085_03835 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LR085_03840 PF00593 TonB dependent receptor LR085_03840 PF07715 TonB-dependent Receptor Plug Domain LR085_03845 PF00732 GMC oxidoreductase LR085_03845 PF05199 GMC oxidoreductase LR085_03850 PF00171 Aldehyde dehydrogenase family LR085_03855 PF02028 BCCT, betaine/carnitine/choline family transporter LR085_03865 PF01323 DSBA-like thioredoxin domain LR085_03875 PF00034 Cytochrome c LR085_03880 PF01926 50S ribosome-binding GTPase LR085_03885 PF04107 Glutamate-cysteine ligase family 2(GCS2) LR085_03890 PF00672 HAMP domain LR085_03890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_03890 PF00512 His Kinase A (phospho-acceptor) domain LR085_03895 PF00486 Transcriptional regulatory protein, C terminal LR085_03895 PF00072 Response regulator receiver domain LR085_03910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_03910 PF03466 LysR substrate binding domain LR085_03915 PF02583 Metal-sensitive transcriptional repressor LR085_03920 PF08240 Alcohol dehydrogenase GroES-like domain LR085_03920 PF00107 Zinc-binding dehydrogenase LR085_03925 PF04828 Glutathione-dependent formaldehyde-activating enzyme LR085_03930 PF00756 Putative esterase LR085_03945 PF00155 Aminotransferase class I and II LR085_03945 PF00392 Bacterial regulatory proteins, gntR family LR085_03950 PF02567 Phenazine biosynthesis-like protein LR085_03955 PF00892 EamA-like transporter family LR085_03965 PF02645 Uncharacterised protein, DegV family COG1307 LR085_04005 PF01979 Amidohydrolase family LR085_04010 PF01979 Amidohydrolase family LR085_04025 PF00462 Glutaredoxin LR085_04030 PF01522 Polysaccharide deacetylase LR085_04045 PF00155 Aminotransferase class I and II LR085_04055 PF03193 RsgA GTPase LR085_04070 PF00128 Alpha amylase, catalytic domain LR085_04085 PF00356 Bacterial regulatory proteins, lacI family LR085_04090 PF00106 short chain dehydrogenase LR085_04095 PF03600 Citrate transporter LR085_04105 PF00072 Response regulator receiver domain LR085_04105 PF00486 Transcriptional regulatory protein, C terminal LR085_04120 PF00196 Bacterial regulatory proteins, luxR family LR085_04120 PF00072 Response regulator receiver domain LR085_04130 PF00512 His Kinase A (phospho-acceptor) domain LR085_04130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_04140 PF00375 Sodium:dicarboxylate symporter family LR085_04145 PF00390 Malic enzyme, N-terminal domain LR085_04145 PF03949 Malic enzyme, NAD binding domain LR085_04145 PF01515 Phosphate acetyl/butaryl transferase LR085_04170 PF03279 Bacterial lipid A biosynthesis acyltransferase LR085_04175 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LR085_04180 PF02321 Outer membrane efflux protein LR085_04195 PF13188 PAS domain LR085_04195 PF00990 Diguanylate cyclase, GGDEF domain LR085_04195 PF00563 EAL domain LR085_04195 PF03707 Bacterial signalling protein N terminal repeat LR085_04200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_04205 PF00330 Aconitase family (aconitate hydratase) LR085_04210 PF00694 Aconitase C-terminal domain LR085_04215 PF08241 Methyltransferase domain LR085_04220 PF00180 Isocitrate/isopropylmalate dehydrogenase LR085_04225 PF00682 HMGL-like LR085_04225 PF08502 LeuA allosteric (dimerisation) domain LR085_04230 PF00291 Pyridoxal-phosphate dependent enzyme LR085_04240 PF00205 Thiamine pyrophosphate enzyme, central domain LR085_04240 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LR085_04240 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LR085_04245 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LR085_04245 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LR085_04255 PF00672 HAMP domain LR085_04255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_04255 PF02203 Tar ligand binding domain homologue LR085_04260 PF07676 WD40-like Beta Propeller Repeat LR085_04260 PF00326 Prolyl oligopeptidase family LR085_04265 PF13667 ThiC-associated domain LR085_04265 PF01964 Radical SAM ThiC family LR085_04270 PF18500 CadC C-terminal domain 1 LR085_04270 PF00486 Transcriptional regulatory protein, C terminal LR085_04275 PF12833 Helix-turn-helix domain LR085_04280 PF07715 TonB-dependent Receptor Plug Domain LR085_04280 PF00593 TonB dependent receptor LR085_04295 PF00719 Inorganic pyrophosphatase LR085_04305 PF03030 Inorganic H+ pyrophosphatase LR085_04325 PF00365 Phosphofructokinase LR085_04335 PF01225 Mur ligase family, catalytic domain LR085_04335 PF02875 Mur ligase family, glutamate ligase domain LR085_04335 PF08245 Mur ligase middle domain LR085_04345 PF01062 Bestrophin, RFP-TM, chloride channel LR085_04350 PF01569 PAP2 superfamily LR085_04370 PF00027 Cyclic nucleotide-binding domain LR085_04370 PF00520 Ion transport protein LR085_04375 PF00202 Aminotransferase class-III LR085_04390 PF01593 Flavin containing amine oxidoreductase LR085_04395 PF00034 Cytochrome c LR085_04395 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LR085_04405 PF00155 Aminotransferase class I and II LR085_04410 PF00127 Copper binding proteins, plastocyanin/azurin family LR085_04415 PF17874 MalT-like TPR region LR085_04415 PF00196 Bacterial regulatory proteins, luxR family LR085_04420 PF00202 Aminotransferase class-III LR085_04430 PF02581 Thiamine monophosphate synthase LR085_04435 PF00301 Rubredoxin LR085_04440 PF13369 Transglutaminase-like superfamily LR085_04450 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LR085_04460 PF01812 5-formyltetrahydrofolate cyclo-ligase family LR085_04470 PF05164 Cell division protein ZapA LR085_04480 PF03695 Uncharacterised protein family (UPF0149) LR085_04485 PF05195 Aminopeptidase P, N-terminal domain LR085_04485 PF00557 Metallopeptidase family M24 LR085_04495 PF00557 Metallopeptidase family M24 LR085_04510 PF06969 HemN C-terminal domain LR085_04510 PF04055 Radical SAM superfamily LR085_04515 PF01725 Ham1 family LR085_04520 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LR085_04525 PF03725 3' exoribonuclease family, domain 2 LR085_04525 PF01138 3' exoribonuclease family, domain 1 LR085_04530 PF03755 YicC-like family, N-terminal region LR085_04530 PF08340 Domain of unknown function (DUF1732) LR085_04535 PF00625 Guanylate kinase LR085_04540 PF01192 RNA polymerase Rpb6 LR085_04545 PF13291 ACT domain LR085_04545 PF02824 TGS domain LR085_04545 PF04607 Region found in RelA / SpoT proteins LR085_04555 PF03466 LysR substrate binding domain LR085_04555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_04560 PF00701 Dihydrodipicolinate synthetase family LR085_04565 PF00171 Aldehyde dehydrogenase family LR085_04570 PF07690 Major Facilitator Superfamily LR085_04575 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LR085_04575 PF13378 Enolase C-terminal domain-like LR085_04580 PF03573 outer membrane porin, OprD family LR085_04585 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LR085_04585 PF08666 SAF domain LR085_04590 PF01042 Endoribonuclease L-PSP LR085_04595 PF00270 DEAD/DEAH box helicase LR085_04595 PF00271 Helicase conserved C-terminal domain LR085_04595 PF17191 RecG wedge domain LR085_04600 PF01156 Inosine-uridine preferring nucleoside hydrolase LR085_04605 PF01197 Ribosomal protein L31 LR085_04610 PF00285 Citrate synthase, C-terminal domain LR085_04620 PF00905 Penicillin binding protein transpeptidase domain LR085_04620 PF00912 Transglycosylase LR085_04620 PF17092 Penicillin-binding protein OB-like domain LR085_04625 PF11104 Type IV pilus assembly protein PilM; LR085_04630 PF05137 Fimbrial assembly protein (PilN) LR085_04635 PF04350 Pilus assembly protein, PilO LR085_04640 PF04351 Pilus assembly protein, PilP LR085_04645 PF03958 Bacterial type II/III secretion system short domain LR085_04645 PF07660 Secretin and TonB N terminus short domain LR085_04645 PF11741 AMIN domain LR085_04645 PF00263 Bacterial type II and III secretion system protein LR085_04650 PF07726 ATPase family associated with various cellular activities (AAA) LR085_04650 PF17863 AAA lid domain LR085_04670 PF07584 Aerotolerance regulator N-terminal LR085_04670 PF00092 von Willebrand factor type A domain LR085_04680 PF00375 Sodium:dicarboxylate symporter family LR085_04685 PF00456 Transketolase, thiamine diphosphate binding domain LR085_04685 PF02780 Transketolase, C-terminal domain LR085_04685 PF02779 Transketolase, pyrimidine binding domain LR085_04690 PF12146 Serine aminopeptidase, S33 LR085_04700 PF04225 Opacity-associated protein A LysM-like domain LR085_04700 PF01551 Peptidase family M23 LR085_04705 PF03734 L,D-transpeptidase catalytic domain LR085_04705 PF01476 LysM domain LR085_04730 PF00005 ABC transporter LR085_04730 PF03459 TOBE domain LR085_04735 PF00528 Binding-protein-dependent transport system inner membrane component LR085_04745 PF04273 Putative phosphatase (DUF442) LR085_04745 PF00753 Metallo-beta-lactamase superfamily LR085_04760 PF03922 OmpW family LR085_04775 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LR085_04775 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LR085_04795 PF00162 Phosphoglycerate kinase LR085_04800 PF13419 Haloacid dehalogenase-like hydrolase LR085_04805 PF00224 Pyruvate kinase, barrel domain LR085_04805 PF02887 Pyruvate kinase, alpha/beta domain LR085_04810 PF00274 Fructose-bisphosphate aldolase class-I LR085_04815 PF01661 Macro domain LR085_04825 PF00291 Pyridoxal-phosphate dependent enzyme LR085_04830 PF10414 Sirohaem synthase dimerisation region LR085_04830 PF14824 Sirohaem biosynthesis protein central LR085_04830 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LR085_04835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_04835 PF03466 LysR substrate binding domain LR085_04865 PF01507 Phosphoadenosine phosphosulfate reductase family LR085_04870 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LR085_04870 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LR085_04875 PF00667 FAD binding domain LR085_04875 PF00175 Oxidoreductase NAD-binding domain LR085_04875 PF00258 Flavodoxin LR085_04880 PF01507 Phosphoadenosine phosphosulfate reductase family LR085_04885 PF00009 Elongation factor Tu GTP binding domain LR085_04890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LR085_04890 PF00529 HlyD membrane-fusion protein of T1SS LR085_04895 PF00873 AcrB/AcrD/AcrF family LR085_04900 PF01433 Peptidase family M1 domain LR085_04900 PF11838 ERAP1-like C-terminal domain LR085_04910 PF01235 Sodium:alanine symporter family LR085_04915 PF00588 SpoU rRNA Methylase family LR085_04915 PF08032 RNA 2'-O ribose methyltransferase substrate binding LR085_04920 PF00135 Carboxylesterase family LR085_04925 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation LR085_04925 PF14508 Glycosyl-hydrolase 97 N-terminal LR085_04925 PF10566 Glycoside hydrolase 97 LR085_04930 PF02837 Glycosyl hydrolases family 2, sugar binding domain LR085_04930 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LR085_04930 PF16353 Domain of unknown function(DUF4981) LR085_04930 PF02929 Beta galactosidase small chain LR085_04930 PF00703 Glycosyl hydrolases family 2 LR085_04945 PF00356 Bacterial regulatory proteins, lacI family LR085_04955 PF01741 Large-conductance mechanosensitive channel, MscL LR085_04960 PF01557 Fumarylacetoacetate (FAA) hydrolase family LR085_04975 PF02080 TrkA-C domain LR085_04975 PF03600 Citrate transporter LR085_04980 PF02390 Putative methyltransferase LR085_04985 PF05690 Thiazole biosynthesis protein ThiG LR085_04995 PF03797 Autotransporter beta-domain LR085_04995 PF00657 GDSL-like Lipase/Acylhydrolase LR085_05105 PF04002 RadC-like JAB domain LR085_05215 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LR085_05215 PF00128 Alpha amylase, catalytic domain LR085_05220 PF18030 RimK PreATP-grasp domain LR085_05220 PF08443 RimK-like ATP-grasp domain LR085_05230 PF00072 Response regulator receiver domain LR085_05230 PF00486 Transcriptional regulatory protein, C terminal LR085_05235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_05235 PF00512 His Kinase A (phospho-acceptor) domain LR085_05235 PF00989 PAS fold LR085_05235 PF11808 Phosphate regulon sensor protein PhoR LR085_05255 PF01121 Dephospho-CoA kinase LR085_05260 PF01478 Type IV leader peptidase family LR085_05260 PF06750 Bacterial Peptidase A24 N-terminal domain LR085_05265 PF00482 Type II secretion system (T2SS), protein F LR085_05270 PF00114 Pilin (bacterial filament) LR085_05270 PF07963 Prokaryotic N-terminal methylation motif LR085_05275 PF00114 Pilin (bacterial filament) LR085_05275 PF07963 Prokaryotic N-terminal methylation motif LR085_05290 PF02954 Bacterial regulatory protein, Fis family LR085_05290 PF00072 Response regulator receiver domain LR085_05290 PF00158 Sigma-54 interaction domain LR085_05295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_05295 PF00512 His Kinase A (phospho-acceptor) domain LR085_05300 PF00549 CoA-ligase LR085_05300 PF08442 ATP-grasp domain LR085_05305 PF02629 CoA binding domain LR085_05305 PF00549 CoA-ligase LR085_05320 PF02540 NAD synthase LR085_05320 PF00795 Carbon-nitrogen hydrolase LR085_05330 PF13525 Outer membrane lipoprotein LR085_05335 PF00849 RNA pseudouridylate synthase LR085_05340 PF02578 Multi-copper polyphenol oxidoreductase laccase LR085_05355 PF02203 Tar ligand binding domain homologue LR085_05355 PF00672 HAMP domain LR085_05355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_05360 PF01011 PQQ enzyme repeat LR085_05365 PF00982 Glycosyltransferase family 20 LR085_05370 PF00723 Glycosyl hydrolases family 15 LR085_05375 PF02358 Trehalose-phosphatase LR085_05380 PF07715 TonB-dependent Receptor Plug Domain LR085_05380 PF00593 TonB dependent receptor LR085_05415 PF01541 GIY-YIG catalytic domain LR085_05420 PF00005 ABC transporter LR085_05425 PF00004 ATPase family associated with various cellular activities (AAA) LR085_05425 PF07724 AAA domain (Cdc48 subfamily) LR085_05425 PF17871 AAA lid domain LR085_05425 PF02861 Clp amino terminal domain, pathogenicity island component LR085_05425 PF10431 C-terminal, D2-small domain, of ClpB protein LR085_05435 PF01053 Cys/Met metabolism PLP-dependent enzyme LR085_05440 PF00593 TonB dependent receptor LR085_05440 PF07715 TonB-dependent Receptor Plug Domain LR085_05455 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LR085_05455 PF12557 Cob(I)alamin adenosyltransferase N terminal LR085_05460 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LR085_05460 PF07685 CobB/CobQ-like glutamine amidotransferase domain LR085_05465 PF17113 Regulatory signalling modulator protein AmpE LR085_05465 PF03186 CobD/Cbib protein LR085_05470 PF00155 Aminotransferase class I and II LR085_05475 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LR085_05475 PF07685 CobB/CobQ-like glutamine amidotransferase domain LR085_05480 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LR085_05485 PF02277 Phosphoribosyltransferase LR085_05495 PF02654 Cobalamin-5-phosphate synthase LR085_05515 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LR085_05515 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LR085_05520 PF06276 Ferric iron reductase FhuF-like transporter LR085_05520 PF04183 IucA / IucC family LR085_05525 PF07690 Major Facilitator Superfamily LR085_05530 PF06276 Ferric iron reductase FhuF-like transporter LR085_05530 PF04183 IucA / IucC family LR085_05540 PF07715 TonB-dependent Receptor Plug Domain LR085_05540 PF07660 Secretin and TonB N terminus short domain LR085_05540 PF00593 TonB dependent receptor LR085_05550 PF02254 TrkA-N domain LR085_05550 PF00999 Sodium/hydrogen exchanger family LR085_05555 PF00067 Cytochrome P450 LR085_05560 PF00593 TonB dependent receptor LR085_05560 PF07715 TonB-dependent Receptor Plug Domain LR085_05565 PF07715 TonB-dependent Receptor Plug Domain LR085_05565 PF00593 TonB dependent receptor LR085_05575 PF00593 TonB dependent receptor LR085_05575 PF07715 TonB-dependent Receptor Plug Domain LR085_05580 PF00005 ABC transporter LR085_05580 PF12848 ABC transporter LR085_05590 PF03466 LysR substrate binding domain LR085_05590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_05600 PF07859 alpha/beta hydrolase fold LR085_05600 PF13472 GDSL-like Lipase/Acylhydrolase family LR085_05605 PF04185 Phosphoesterase family LR085_05605 PF05506 Domain of unknown function (DUF756) LR085_05615 PF05116 Sucrose-6F-phosphate phosphohydrolase LR085_05615 PF00982 Glycosyltransferase family 20 LR085_05620 PF07690 Major Facilitator Superfamily LR085_05645 PF02938 GAD domain LR085_05645 PF00152 tRNA synthetases class II (D, K and N) LR085_05645 PF01336 OB-fold nucleic acid binding domain LR085_05660 PF01709 Transcriptional regulator LR085_05665 PF02075 Crossover junction endodeoxyribonuclease RuvC LR085_05670 PF01330 RuvA N terminal domain LR085_05670 PF07499 RuvA, C-terminal domain LR085_05675 PF02705 K+ potassium transporter LR085_05685 PF05496 Holliday junction DNA helicase RuvB P-loop domain LR085_05685 PF05491 RuvB C-terminal winged helix domain LR085_05685 PF17864 RuvB AAA lid domain LR085_05690 PF03061 Thioesterase superfamily LR085_05695 PF01618 MotA/TolQ/ExbB proton channel family LR085_05700 PF02472 Biopolymer transport protein ExbD/TolR LR085_05710 PF07676 WD40-like Beta Propeller Repeat LR085_05710 PF04052 TolB amino-terminal domain LR085_05715 PF00691 OmpA family LR085_05725 PF04055 Radical SAM superfamily LR085_05730 PF06508 Queuosine biosynthesis protein QueC LR085_05765 PF00654 Voltage gated chloride channel LR085_05770 PF03466 LysR substrate binding domain LR085_05770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_05775 PF01810 LysE type translocator LR085_05795 PF00849 RNA pseudouridylate synthase LR085_05795 PF01479 S4 domain LR085_05810 PF00570 HRDC domain LR085_05810 PF16124 RecQ zinc-binding LR085_05810 PF00271 Helicase conserved C-terminal domain LR085_05810 PF09382 RQC domain LR085_05810 PF00270 DEAD/DEAH box helicase LR085_05815 PF00210 Ferritin-like domain LR085_05820 PF04408 Helicase associated domain (HA2) LR085_05820 PF00271 Helicase conserved C-terminal domain LR085_05820 PF00270 DEAD/DEAH box helicase LR085_05820 PF11898 Domain of unknown function (DUF3418) LR085_05820 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LR085_05830 PF02685 Glucokinase LR085_05845 PF04055 Radical SAM superfamily LR085_05845 PF13186 Iron-sulfur cluster-binding domain LR085_05850 PF05402 Coenzyme PQQ synthesis protein D (PqqD) LR085_05855 PF03070 TENA/THI-4/PQQC family LR085_05860 PF12706 Beta-lactamase superfamily domain LR085_05865 PF08042 PqqA family LR085_05870 PF13291 ACT domain LR085_05870 PF04607 Region found in RelA / SpoT proteins LR085_05870 PF02824 TGS domain LR085_05880 PF00535 Glycosyl transferase family 2 LR085_05885 PF00905 Penicillin binding protein transpeptidase domain LR085_05885 PF00912 Transglycosylase LR085_05885 PF14814 Bifunctional transglycosylase second domain LR085_05895 PF13307 Helicase C-terminal domain LR085_05895 PF04851 Type III restriction enzyme, res subunit LR085_05910 PF00814 Glycoprotease family LR085_05915 PF03747 ADP-ribosylglycohydrolase LR085_05925 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LR085_05925 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LR085_05930 PF00072 Response regulator receiver domain LR085_05935 PF00072 Response regulator receiver domain LR085_05940 PF01584 CheW-like domain LR085_05945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_05945 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LR085_05950 PF01584 CheW-like domain LR085_05950 PF02895 Signal transducing histidine kinase, homodimeric domain LR085_05950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_05950 PF01627 Hpt domain LR085_05950 PF00072 Response regulator receiver domain LR085_05980 PF04542 Sigma-70 region 2 LR085_05980 PF08281 Sigma-70, region 4 LR085_05985 PF00092 von Willebrand factor type A domain LR085_05985 PF12450 von Willebrand factor LR085_05985 PF12034 Domain of unknown function (DUF3520) LR085_05990 PF01112 Asparaginase LR085_05995 PF03932 CutC family LR085_06000 PF00067 Cytochrome P450 LR085_06055 PF12161 HsdM N-terminal domain LR085_06055 PF02384 N-6 DNA Methylase LR085_06085 PF01301 Glycosyl hydrolases family 35 LR085_06090 PF07971 Glycosyl hydrolase family 92 LR085_06090 PF17678 Glycosyl hydrolase family 92 N-terminal domain LR085_06100 PF00933 Glycosyl hydrolase family 3 N terminal domain LR085_06100 PF14310 Fibronectin type III-like domain LR085_06100 PF01915 Glycosyl hydrolase family 3 C-terminal domain LR085_06100 PF07691 PA14 domain LR085_06110 PF00728 Glycosyl hydrolase family 20, catalytic domain LR085_06110 PF02838 Glycosyl hydrolase family 20, domain 2 LR085_06110 PF07691 PA14 domain LR085_06115 PF00704 Glycosyl hydrolases family 18 LR085_06115 PF01476 LysM domain LR085_06135 PF02685 Glucokinase LR085_06140 PF04452 RNA methyltransferase LR085_06145 PF00202 Aminotransferase class-III LR085_06150 PF00293 NUDIX domain LR085_06155 PF00459 Inositol monophosphatase family LR085_06160 PF03819 MazG nucleotide pyrophosphohydrolase domain LR085_06165 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LR085_06175 PF01145 SPFH domain / Band 7 family LR085_06175 PF16200 C-terminal region of band_7 LR085_06185 PF08669 Glycine cleavage T-protein C-terminal barrel domain LR085_06185 PF01571 Aminomethyltransferase folate-binding domain LR085_06190 PF01597 Glycine cleavage H-protein LR085_06220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LR085_06220 PF02770 Acyl-CoA dehydrogenase, middle domain LR085_06220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LR085_06220 PF09317 Domain of unknown function (DUF1974) LR085_06230 PF00440 Bacterial regulatory proteins, tetR family LR085_06235 PF07715 TonB-dependent Receptor Plug Domain LR085_06235 PF00593 TonB dependent receptor LR085_06245 PF01430 Hsp33 protein LR085_06250 PF00912 Transglycosylase LR085_06255 PF00535 Glycosyl transferase family 2 LR085_06260 PF00571 CBS domain LR085_06260 PF00478 IMP dehydrogenase / GMP reductase domain LR085_06265 PF05170 AsmA family LR085_06270 PF03006 Haemolysin-III related LR085_06275 PF16658 Class II release factor RF3, C-terminal domain LR085_06275 PF00009 Elongation factor Tu GTP binding domain LR085_06280 PF08460 Bacterial SH3 domain LR085_06280 PF01551 Peptidase family M23 LR085_06285 PF00561 alpha/beta hydrolase fold LR085_06290 PF01053 Cys/Met metabolism PLP-dependent enzyme LR085_06295 PF03447 Homoserine dehydrogenase, NAD binding domain LR085_06295 PF00742 Homoserine dehydrogenase LR085_06295 PF00696 Amino acid kinase family LR085_06300 PF12697 Alpha/beta hydrolase family LR085_06310 PF03315 Serine dehydratase beta chain LR085_06310 PF03313 Serine dehydratase alpha chain LR085_06330 PF04264 YceI-like domain LR085_06340 PF17149 Periplasmic sensor domain found in signal transduction proteins LR085_06340 PF00512 His Kinase A (phospho-acceptor) domain LR085_06340 PF01627 Hpt domain LR085_06340 PF00072 Response regulator receiver domain LR085_06340 PF00672 HAMP domain LR085_06340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_06345 PF00072 Response regulator receiver domain LR085_06345 PF01627 Hpt domain LR085_06345 PF00512 His Kinase A (phospho-acceptor) domain LR085_06345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_06345 PF00672 HAMP domain LR085_06345 PF17149 Periplasmic sensor domain found in signal transduction proteins LR085_06350 PF07690 Major Facilitator Superfamily LR085_06360 PF01208 Uroporphyrinogen decarboxylase (URO-D) LR085_06370 PF01761 3-dehydroquinate synthase LR085_06380 PF01243 Pyridoxamine 5'-phosphate oxidase LR085_06380 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LR085_06390 PF04012 PspA/IM30 family LR085_06415 PF03738 Glutathionylspermidine synthase preATP-grasp LR085_06425 PF07690 Major Facilitator Superfamily LR085_06430 PF00376 MerR family regulatory protein LR085_06430 PF09278 MerR, DNA binding LR085_06455 PF04820 Tryptophan halogenase LR085_06475 PF01339 CheB methylesterase LR085_06475 PF00072 Response regulator receiver domain LR085_06485 PF00324 Amino acid permease LR085_06490 PF00196 Bacterial regulatory proteins, luxR family LR085_06495 PF00561 alpha/beta hydrolase fold LR085_06510 PF00544 Pectate lyase LR085_06515 PF00324 Amino acid permease LR085_06520 PF01654 Cytochrome bd terminal oxidase subunit I LR085_06525 PF02322 Cytochrome bd terminal oxidase subunit II LR085_06535 PF00571 CBS domain LR085_06535 PF01769 Divalent cation transporter LR085_06535 PF03448 MgtE intracellular N domain LR085_06540 PF02896 PEP-utilising enzyme, TIM barrel domain LR085_06540 PF00391 PEP-utilising enzyme, mobile domain LR085_06540 PF05524 PEP-utilising enzyme, N-terminal LR085_06545 PF00381 PTS HPr component phosphorylation site LR085_06555 PF03668 P-loop ATPase protein family LR085_06560 PF02603 HPr Serine kinase N terminus LR085_06560 PF07475 HPr Serine kinase C-terminal domain LR085_06565 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LR085_06570 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LR085_06575 PF04552 Sigma-54, DNA binding domain LR085_06575 PF00309 Sigma-54 factor, Activator interacting domain (AID) LR085_06575 PF04963 Sigma-54 factor, core binding domain LR085_06600 PF01380 SIS domain LR085_06600 PF00571 CBS domain LR085_06605 PF01722 BolA-like protein LR085_06610 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LR085_06630 PF00551 Formyl transferase LR085_06640 PF02769 AIR synthase related protein, C-terminal domain LR085_06640 PF00586 AIR synthase related protein, N-terminal domain LR085_06650 PF01594 AI-2E family transporter LR085_06655 PF00308 Bacterial dnaA protein LR085_06660 PF00483 Nucleotidyl transferase LR085_06665 PF01636 Phosphotransferase enzyme family LR085_06675 PF01546 Peptidase family M20/M25/M40 LR085_06675 PF07687 Peptidase dimerisation domain LR085_06690 PF00258 Flavodoxin LR085_06690 PF00175 Oxidoreductase NAD-binding domain LR085_06690 PF00667 FAD binding domain LR085_06695 PF02424 ApbE family LR085_06725 PF07715 TonB-dependent Receptor Plug Domain LR085_06725 PF00593 TonB dependent receptor LR085_06730 PF00355 Rieske [2Fe-2S] domain LR085_06740 PF00266 Aminotransferase class-V LR085_06745 PF01458 Uncharacterized protein family (UPF0051) LR085_06750 PF00005 ABC transporter LR085_06755 PF01458 Uncharacterized protein family (UPF0051) LR085_06770 PF01965 DJ-1/PfpI family LR085_06800 PF14748 Pyrroline-5-carboxylate reductase dimerisation LR085_06800 PF03807 NADP oxidoreductase coenzyme F420-dependent LR085_06805 PF01168 Alanine racemase, N-terminal domain LR085_06810 PF00437 Type II/IV secretion system protein LR085_06815 PF00437 Type II/IV secretion system protein LR085_06835 PF00958 GMP synthase C terminal domain LR085_06835 PF13673 Acetyltransferase (GNAT) domain LR085_06835 PF03352 Methyladenine glycosylase LR085_06835 PF13302 Acetyltransferase (GNAT) domain LR085_06835 PF00117 Glutamine amidotransferase class-I LR085_06840 PF13687 Domain of unknown function (DUF4153) LR085_06845 PF02622 Uncharacterized ACR, COG1678 LR085_06850 PF03652 Holliday junction resolvase LR085_06855 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LR085_06855 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LR085_06860 PF02566 OsmC-like protein LR085_06870 PF02567 Phenazine biosynthesis-like protein LR085_06875 PF02567 Phenazine biosynthesis-like protein LR085_06880 PF00696 Amino acid kinase family LR085_06880 PF01842 ACT domain LR085_06895 PF08245 Mur ligase middle domain LR085_06905 PF00348 Polyprenyl synthetase LR085_06920 PF06629 MltA-interacting protein MipA LR085_06930 PF00072 Response regulator receiver domain LR085_06930 PF00486 Transcriptional regulatory protein, C terminal LR085_06935 PF01590 GAF domain LR085_06935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_06935 PF00512 His Kinase A (phospho-acceptor) domain LR085_06935 PF08446 PAS fold LR085_06935 PF00360 Phytochrome region LR085_06940 PF00360 Phytochrome region LR085_06940 PF00563 EAL domain LR085_06940 PF01590 GAF domain LR085_06940 PF00990 Diguanylate cyclase, GGDEF domain LR085_06945 PF00107 Zinc-binding dehydrogenase LR085_06945 PF08240 Alcohol dehydrogenase GroES-like domain LR085_06950 PF00111 2Fe-2S iron-sulfur cluster binding domain LR085_06950 PF01799 [2Fe-2S] binding domain LR085_06950 PF10518 TAT (twin-arginine translocation) pathway signal sequence LR085_06955 PF03450 CO dehydrogenase flavoprotein C-terminal domain LR085_06955 PF00941 FAD binding domain in molybdopterin dehydrogenase LR085_06960 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LR085_06960 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LR085_06965 PF13478 XdhC Rossmann domain LR085_06965 PF02625 XdhC and CoxI family LR085_06970 PF12804 MobA-like NTP transferase domain LR085_07000 PF04328 Selenoprotein, putative LR085_07005 PF13722 5TM C-terminal transporter carbon starvation CstA LR085_07005 PF02554 Carbon starvation protein CstA LR085_07010 PF02678 Pirin LR085_07010 PF05726 Pirin C-terminal cupin domain LR085_07035 PF04493 Endonuclease V LR085_07040 PF00300 Histidine phosphatase superfamily (branch 1) LR085_07050 PF01431 Peptidase family M13 LR085_07050 PF05649 Peptidase family M13 LR085_07055 PF13091 PLD-like domain LR085_07060 PF01339 CheB methylesterase LR085_07060 PF00072 Response regulator receiver domain LR085_07065 PF01739 CheR methyltransferase, SAM binding domain LR085_07065 PF03705 CheR methyltransferase, all-alpha domain LR085_07070 PF00563 EAL domain LR085_07070 PF00990 Diguanylate cyclase, GGDEF domain LR085_07070 PF03707 Bacterial signalling protein N terminal repeat LR085_07075 PF01584 CheW-like domain LR085_07080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_07080 PF00672 HAMP domain LR085_07085 PF02895 Signal transducing histidine kinase, homodimeric domain LR085_07085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_07085 PF01627 Hpt domain LR085_07085 PF01584 CheW-like domain LR085_07085 PF09078 CheY binding LR085_07095 PF02559 CarD-like/TRCF domain LR085_07095 PF00270 DEAD/DEAH box helicase LR085_07095 PF00271 Helicase conserved C-terminal domain LR085_07095 PF03461 TRCF domain LR085_07095 PF17757 UvrB interaction domain LR085_07110 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LR085_07115 PF00072 Response regulator receiver domain LR085_07115 PF00486 Transcriptional regulatory protein, C terminal LR085_07125 PF00672 HAMP domain LR085_07125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_07125 PF00512 His Kinase A (phospho-acceptor) domain LR085_07130 PF06123 Inner membrane protein CreD LR085_07160 PF00749 tRNA synthetases class I (E and Q), catalytic domain LR085_07165 PF01475 Ferric uptake regulator family LR085_07175 PF00529 HlyD membrane-fusion protein of T1SS LR085_07175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LR085_07180 PF00873 AcrB/AcrD/AcrF family LR085_07185 PF02321 Outer membrane efflux protein LR085_07190 PF16859 Tetracyclin repressor-like, C-terminal domain LR085_07190 PF00440 Bacterial regulatory proteins, tetR family LR085_07195 PF00248 Aldo/keto reductase family LR085_07200 PF03466 LysR substrate binding domain LR085_07200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_07210 PF06719 AraC-type transcriptional regulator N-terminus LR085_07210 PF12833 Helix-turn-helix domain LR085_07225 PF01483 Proprotein convertase P-domain LR085_07225 PF00082 Subtilase family LR085_07235 PF07690 Major Facilitator Superfamily LR085_07270 PF12838 4Fe-4S dicluster domain LR085_07270 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LR085_07270 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LR085_07270 PF01568 Molydopterin dinucleotide binding domain LR085_07270 PF00384 Molybdopterin oxidoreductase LR085_07280 PF01654 Cytochrome bd terminal oxidase subunit I LR085_07285 PF02322 Cytochrome bd terminal oxidase subunit II LR085_07300 PF07715 TonB-dependent Receptor Plug Domain LR085_07300 PF00593 TonB dependent receptor LR085_07315 PF00654 Voltage gated chloride channel LR085_07325 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LR085_07325 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LR085_07380 PF03880 DbpA RNA binding domain LR085_07380 PF00270 DEAD/DEAH box helicase LR085_07380 PF00271 Helicase conserved C-terminal domain LR085_07385 PF08448 PAS fold LR085_07385 PF00563 EAL domain LR085_07385 PF00990 Diguanylate cyclase, GGDEF domain LR085_07390 PF01479 S4 domain LR085_07390 PF00849 RNA pseudouridylate synthase LR085_07405 PF03737 Aldolase/RraA LR085_07410 PF00144 Beta-lactamase LR085_07415 PF00999 Sodium/hydrogen exchanger family LR085_07420 PF00005 ABC transporter LR085_07420 PF00664 ABC transporter transmembrane region LR085_07455 PF01022 Bacterial regulatory protein, arsR family LR085_07460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_07460 PF03466 LysR substrate binding domain LR085_07475 PF04070 Domain of unknown function (DUF378) LR085_07485 PF00085 Thioredoxin LR085_07495 PF00133 tRNA synthetases class I (I, L, M and V) LR085_07495 PF08264 Anticodon-binding domain of tRNA LR085_07495 PF13603 Leucyl-tRNA synthetase, Domain 2 LR085_07510 PF01467 Cytidylyltransferase-like LR085_07525 PF02590 Predicted SPOUT methyltransferase LR085_07540 PF04402 Protein of unknown function (DUF541) LR085_07545 PF02545 Maf-like protein LR085_07550 PF00575 S1 RNA binding domain LR085_07550 PF10150 Ribonuclease E/G family LR085_07555 PF13502 AsmA-like C-terminal region LR085_07555 PF13116 Protein of unknown function LR085_07565 PF01523 Putative modulator of DNA gyrase LR085_07570 PF04751 Protein of unknown function (DUF615) LR085_07575 PF01523 Putative modulator of DNA gyrase LR085_07595 PF00348 Polyprenyl synthetase LR085_07600 PF02609 Exonuclease VII small subunit LR085_07610 PF00245 Alkaline phosphatase LR085_07615 PF00375 Sodium:dicarboxylate symporter family LR085_07635 PF00512 His Kinase A (phospho-acceptor) domain LR085_07635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_07640 PF00072 Response regulator receiver domain LR085_07640 PF02954 Bacterial regulatory protein, Fis family LR085_07640 PF00158 Sigma-54 interaction domain LR085_07665 PF00877 NlpC/P60 family LR085_07670 PF00877 NlpC/P60 family LR085_07675 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LR085_07680 PF04235 Protein of unknown function (DUF418) LR085_07685 PF01266 FAD dependent oxidoreductase LR085_07690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LR085_07690 PF07992 Pyridine nucleotide-disulphide oxidoreductase LR085_07710 PF01431 Peptidase family M13 LR085_07710 PF05649 Peptidase family M13 LR085_07715 PF01431 Peptidase family M13 LR085_07715 PF05649 Peptidase family M13 LR085_07730 PF07715 TonB-dependent Receptor Plug Domain LR085_07730 PF00593 TonB dependent receptor LR085_07735 PF10609 NUBPL iron-transfer P-loop NTPase LR085_07740 PF00692 dUTPase LR085_07760 PF01738 Dienelactone hydrolase family LR085_07765 PF02661 Fic/DOC family LR085_07770 PF04055 Radical SAM superfamily LR085_07770 PF18693 TRAM domain LR085_07770 PF00919 Uncharacterized protein family UPF0004 LR085_07775 PF01272 Transcription elongation factor, GreA/GreB, C-term LR085_07775 PF03449 Transcription elongation factor, N-terminal LR085_07790 PF00293 NUDIX domain LR085_07800 PF05872 Bacterial protein of unknown function (DUF853) LR085_07815 PF02666 Phosphatidylserine decarboxylase LR085_07820 PF02630 SCO1/SenC LR085_07825 PF05175 Methyltransferase small domain LR085_07835 PF01264 Chorismate synthase LR085_07840 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LR085_07840 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LR085_07845 PF01118 Semialdehyde dehydrogenase, NAD binding domain LR085_07845 PF02774 Semialdehyde dehydrogenase, dimerisation domain LR085_07860 PF01416 tRNA pseudouridine synthase LR085_07865 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LR085_07870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_07870 PF03466 LysR substrate binding domain LR085_07875 PF00291 Pyridoxal-phosphate dependent enzyme LR085_07885 PF00290 Tryptophan synthase alpha chain LR085_07890 PF17848 Acetyl-coA carboxylase zinc finger domain LR085_07890 PF01039 Carboxyl transferase domain LR085_07895 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LR085_07895 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LR085_07895 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LR085_07895 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LR085_07910 PF00563 EAL domain LR085_07910 PF03707 Bacterial signalling protein N terminal repeat LR085_07910 PF00990 Diguanylate cyclase, GGDEF domain LR085_07945 PF00106 short chain dehydrogenase LR085_07965 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LR085_07970 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LR085_07975 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LR085_07980 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LR085_07990 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LR085_07990 PF10531 SLBB domain LR085_07990 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LR085_07995 PF00384 Molybdopterin oxidoreductase LR085_07995 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LR085_07995 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal LR085_08000 PF00146 NADH dehydrogenase LR085_08005 PF12838 4Fe-4S dicluster domain LR085_08010 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LR085_08015 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LR085_08020 PF00361 Proton-conducting membrane transporter LR085_08020 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LR085_08025 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus LR085_08025 PF00361 Proton-conducting membrane transporter LR085_08030 PF00361 Proton-conducting membrane transporter LR085_08040 PF02576 RimP N-terminal domain LR085_08040 PF17384 RimP C-terminal SH3 domain LR085_08045 PF13184 NusA-like KH domain LR085_08045 PF08529 NusA N-terminal domain LR085_08045 PF00575 S1 RNA binding domain LR085_08050 PF00009 Elongation factor Tu GTP binding domain LR085_08050 PF11987 Translation-initiation factor 2 LR085_08050 PF08364 Bacterial translation initiation factor IF-2 associated region LR085_08050 PF04760 Translation initiation factor IF-2, N-terminal region LR085_08055 PF02033 Ribosome-binding factor A LR085_08060 PF09157 Pseudouridine synthase II TruB, C-terminal LR085_08060 PF16198 tRNA pseudouridylate synthase B C-terminal domain LR085_08060 PF01509 TruB family pseudouridylate synthase (N terminal domain) LR085_08065 PF00312 Ribosomal protein S15 LR085_08070 PF03725 3' exoribonuclease family, domain 2 LR085_08070 PF01138 3' exoribonuclease family, domain 1 LR085_08070 PF00575 S1 RNA binding domain LR085_08070 PF00013 KH domain LR085_08070 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LR085_08080 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LR085_08080 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LR085_08090 PF00731 AIR carboxylase LR085_08095 PF02222 ATP-grasp domain LR085_08095 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LR085_08100 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LR085_08100 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LR085_08105 PF00462 Glutaredoxin LR085_08115 PF01914 MarC family integral membrane protein LR085_08120 PF00593 TonB dependent receptor LR085_08125 PF11892 Domain of unknown function (DUF3412) LR085_08125 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LR085_08125 PF03641 Possible lysine decarboxylase LR085_08130 PF06580 Histidine kinase LR085_08130 PF07694 5TMR of 5TMR-LYT LR085_08130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_08155 PF05567 Neisseria PilC beta-propeller domain LR085_08160 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor LR085_08160 PF07963 Prokaryotic N-terminal methylation motif LR085_08170 PF00114 Pilin (bacterial filament) LR085_08170 PF07963 Prokaryotic N-terminal methylation motif LR085_08175 PF00271 Helicase conserved C-terminal domain LR085_08175 PF04851 Type III restriction enzyme, res subunit LR085_08175 PF02151 UvrB/uvrC motif LR085_08175 PF12344 Ultra-violet resistance protein B LR085_08175 PF17757 UvrB interaction domain LR085_08190 PF02534 Type IV secretory system Conjugative DNA transfer LR085_08210 PF03743 Bacterial conjugation TrbI-like protein LR085_08215 PF00437 Type II/IV secretion system protein LR085_08220 PF01464 Transglycosylase SLT domain LR085_08230 PF05101 Type IV secretory pathway, VirB3-like protein LR085_08235 PF03135 CagE, TrbE, VirB family, component of type IV transporter system LR085_08260 PF01471 Putative peptidoglycan binding domain LR085_08260 PF04717 Type VI secretion system, phage-baseplate injector LR085_08310 PF00128 Alpha amylase, catalytic domain LR085_08325 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation LR085_08325 PF14508 Glycosyl-hydrolase 97 N-terminal LR085_08325 PF10566 Glycoside hydrolase 97 LR085_08335 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LR085_08340 PF00128 Alpha amylase, catalytic domain LR085_08340 PF00686 Starch binding domain LR085_08345 PF00356 Bacterial regulatory proteins, lacI family LR085_08350 PF03129 Anticodon binding domain LR085_08350 PF02824 TGS domain LR085_08350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LR085_08350 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LR085_08355 PF00707 Translation initiation factor IF-3, C-terminal domain LR085_08355 PF05198 Translation initiation factor IF-3, N-terminal domain LR085_08360 PF01632 Ribosomal protein L35 LR085_08365 PF00453 Ribosomal protein L20 LR085_08370 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LR085_08370 PF01409 tRNA synthetases class II core domain (F) LR085_08375 PF03483 B3/4 domain LR085_08375 PF03484 tRNA synthetase B5 domain LR085_08375 PF03147 Ferredoxin-fold anticodon binding domain LR085_08375 PF01588 Putative tRNA binding domain LR085_08375 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LR085_08380 PF00216 Bacterial DNA-binding protein LR085_08385 PF13411 MerR HTH family regulatory protein LR085_08405 PF02397 Bacterial sugar transferase LR085_08425 PF13439 Glycosyltransferase Family 4 LR085_08425 PF00534 Glycosyl transferases group 1 LR085_08435 PF01943 Polysaccharide biosynthesis protein LR085_08450 PF03808 Glycosyl transferase WecB/TagA/CpsF family LR085_08465 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LR085_08465 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LR085_08475 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family LR085_08495 PF02779 Transketolase, pyrimidine binding domain LR085_08495 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LR085_08495 PF02780 Transketolase, C-terminal domain LR085_08505 PF02770 Acyl-CoA dehydrogenase, middle domain LR085_08505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LR085_08505 PF12806 Acetyl-CoA dehydrogenase C-terminal like LR085_08505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LR085_08540 PF08448 PAS fold LR085_08540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_08540 PF00512 His Kinase A (phospho-acceptor) domain LR085_08540 PF00072 Response regulator receiver domain LR085_08540 PF13188 PAS domain LR085_08565 PF13426 PAS domain LR085_08565 PF00072 Response regulator receiver domain LR085_08565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_08575 PF04362 Bacterial Fe(2+) trafficking LR085_08580 PF00730 HhH-GPD superfamily base excision DNA repair protein LR085_08580 PF14815 NUDIX domain LR085_08580 PF00633 Helix-hairpin-helix motif LR085_08585 PF02881 SRP54-type protein, helical bundle domain LR085_08585 PF00448 SRP54-type protein, GTPase domain LR085_08595 PF05544 Proline racemase LR085_08600 PF01266 FAD dependent oxidoreductase LR085_08610 PF04324 BFD-like [2Fe-2S] binding domain LR085_08610 PF07992 Pyridine nucleotide-disulphide oxidoreductase LR085_08615 PF00701 Dihydrodipicolinate synthetase family LR085_08620 PF00171 Aldehyde dehydrogenase family LR085_08625 PF01321 Creatinase/Prolidase N-terminal domain LR085_08625 PF00557 Metallopeptidase family M24 LR085_08645 PF13520 Amino acid permease LR085_08680 PF00593 TonB dependent receptor LR085_08680 PF07715 TonB-dependent Receptor Plug Domain LR085_08685 PF07532 Bacterial Ig-like domain (group 4) LR085_08690 PF04616 Glycosyl hydrolases family 43 LR085_08695 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LR085_08695 PF00326 Prolyl oligopeptidase family LR085_08705 PF07715 TonB-dependent Receptor Plug Domain LR085_08705 PF00593 TonB dependent receptor LR085_08750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_08750 PF00183 Hsp90 protein LR085_08760 PF01467 Cytidylyltransferase-like LR085_08775 PF00037 4Fe-4S binding domain LR085_08785 PF02927 Cellulase N-terminal ig-like domain LR085_08785 PF00759 Glycosyl hydrolase family 9 LR085_08815 PF00202 Aminotransferase class-III LR085_08825 PF02547 Queuosine biosynthesis protein LR085_08830 PF01702 Queuine tRNA-ribosyltransferase LR085_08835 PF02699 Preprotein translocase subunit LR085_08840 PF13721 SecD export protein N-terminal TM region LR085_08840 PF02355 Protein export membrane protein LR085_08840 PF07549 SecD/SecF GG Motif LR085_08845 PF07549 SecD/SecF GG Motif LR085_08845 PF02355 Protein export membrane protein LR085_08860 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LR085_08865 PF00294 pfkB family carbohydrate kinase LR085_08870 PF05524 PEP-utilising enzyme, N-terminal LR085_08870 PF00391 PEP-utilising enzyme, mobile domain LR085_08870 PF02896 PEP-utilising enzyme, TIM barrel domain LR085_08870 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LR085_08870 PF00381 PTS HPr component phosphorylation site LR085_08875 PF00356 Bacterial regulatory proteins, lacI family LR085_08880 PF00873 AcrB/AcrD/AcrF family LR085_08885 PF00529 HlyD membrane-fusion protein of T1SS LR085_08885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LR085_08895 PF05088 Bacterial NAD-glutamate dehydrogenase LR085_08900 PF12833 Helix-turn-helix domain LR085_08905 PF00857 Isochorismatase family LR085_08910 PF07690 Major Facilitator Superfamily LR085_08915 PF00072 Response regulator receiver domain LR085_08920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_08920 PF00512 His Kinase A (phospho-acceptor) domain LR085_08920 PF01627 Hpt domain LR085_08920 PF00072 Response regulator receiver domain LR085_08920 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LR085_08920 PF00672 HAMP domain LR085_08925 PF04286 Protein of unknown function (DUF445) LR085_08935 PF00202 Aminotransferase class-III LR085_08940 PF07690 Major Facilitator Superfamily LR085_08945 PF02634 FdhD/NarQ family LR085_08950 PF00384 Molybdopterin oxidoreductase LR085_08965 PF01814 Hemerythrin HHE cation binding domain LR085_08970 PF00990 Diguanylate cyclase, GGDEF domain LR085_08970 PF00072 Response regulator receiver domain LR085_08975 PF01266 FAD dependent oxidoreductase LR085_08980 PF00120 Glutamine synthetase, catalytic domain LR085_08985 PF07722 Peptidase C26 LR085_08990 PF00120 Glutamine synthetase, catalytic domain LR085_08995 PF00202 Aminotransferase class-III LR085_09000 PF13416 Bacterial extracellular solute-binding protein LR085_09005 PF13533 Biotin-lipoyl like LR085_09010 PF07690 Major Facilitator Superfamily LR085_09015 PF02321 Outer membrane efflux protein LR085_09020 PF08402 TOBE domain LR085_09020 PF00005 ABC transporter LR085_09030 PF00528 Binding-protein-dependent transport system inner membrane component LR085_09035 PF00528 Binding-protein-dependent transport system inner membrane component LR085_09045 PF00171 Aldehyde dehydrogenase family LR085_09060 PF00571 CBS domain LR085_09060 PF03471 Transporter associated domain LR085_09070 PF02130 Uncharacterized protein family UPF0054 LR085_09080 PF02562 PhoH-like protein LR085_09085 PF04055 Radical SAM superfamily LR085_09085 PF01938 TRAM domain LR085_09085 PF00919 Uncharacterized protein family UPF0004 LR085_09090 PF14497 Glutathione S-transferase, C-terminal domain LR085_09090 PF02798 Glutathione S-transferase, N-terminal domain LR085_09100 PF01464 Transglycosylase SLT domain LR085_09105 PF00355 Rieske [2Fe-2S] domain LR085_09105 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LR085_09110 PF00033 Cytochrome b/b6/petB LR085_09110 PF00032 Cytochrome b(C-terminal)/b6/petD LR085_09115 PF02167 Cytochrome C1 family LR085_09120 PF02798 Glutathione S-transferase, N-terminal domain LR085_09120 PF00043 Glutathione S-transferase, C-terminal domain LR085_09125 PF04386 Stringent starvation protein B LR085_09140 PF00271 Helicase conserved C-terminal domain LR085_09140 PF08494 DEAD/H associated LR085_09140 PF00270 DEAD/DEAH box helicase LR085_09145 PF02245 Methylpurine-DNA glycosylase (MPG) LR085_09150 PF00672 HAMP domain LR085_09150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_09150 PF02203 Tar ligand binding domain homologue LR085_09155 PF01584 CheW-like domain LR085_09185 PF01381 Helix-turn-helix LR085_09200 PF00589 Phage integrase family LR085_09200 PF13356 Arm DNA-binding domain LR085_09225 PF00570 HRDC domain LR085_09225 PF01612 3'-5' exonuclease LR085_09230 PF03781 Sulfatase-modifying factor enzyme 1 LR085_09240 PF02601 Exonuclease VII, large subunit LR085_09240 PF13742 OB-fold nucleic acid binding domain LR085_09245 PF08331 Domain of unknown function (DUF1730) LR085_09250 PF01256 Carbohydrate kinase LR085_09250 PF03853 YjeF-related protein N-terminus LR085_09260 PF01520 N-acetylmuramoyl-L-alanine amidase LR085_09260 PF11741 AMIN domain LR085_09265 PF08676 MutL C terminal dimerisation domain LR085_09265 PF01119 DNA mismatch repair protein, C-terminal domain LR085_09280 PF07879 PHB/PHA accumulation regulator DNA-binding domain LR085_09280 PF05233 PHB accumulation regulatory domain LR085_09285 PF00106 short chain dehydrogenase LR085_09290 PF00749 tRNA synthetases class I (E and Q), catalytic domain LR085_09295 PF01435 Peptidase family M48 LR085_09300 PF00990 Diguanylate cyclase, GGDEF domain LR085_09300 PF03707 Bacterial signalling protein N terminal repeat LR085_09300 PF00563 EAL domain LR085_09310 PF07152 YaeQ protein LR085_09315 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LR085_09320 PF00313 'Cold-shock' DNA-binding domain LR085_09330 PF07859 alpha/beta hydrolase fold LR085_09335 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LR085_09340 PF00156 Phosphoribosyl transferase domain LR085_09345 PF00270 DEAD/DEAH box helicase LR085_09345 PF03880 DbpA RNA binding domain LR085_09345 PF00271 Helicase conserved C-terminal domain LR085_09350 PF16326 ABC transporter C-terminal domain LR085_09350 PF00005 ABC transporter LR085_09350 PF12848 ABC transporter LR085_09360 PF00545 ribonuclease LR085_09365 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LR085_09365 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LR085_09370 PF00459 Inositol monophosphatase family LR085_09375 PF00588 SpoU rRNA Methylase family LR085_09385 PF13188 PAS domain LR085_09385 PF03707 Bacterial signalling protein N terminal repeat LR085_09385 PF00990 Diguanylate cyclase, GGDEF domain LR085_09385 PF00563 EAL domain LR085_09390 PF04055 Radical SAM superfamily LR085_09395 PF09285 Elongation factor P, C-terminal LR085_09395 PF08207 Elongation factor P (EF-P) KOW-like domain LR085_09395 PF01132 Elongation factor P (EF-P) OB domain LR085_09415 PF13419 Haloacid dehalogenase-like hydrolase LR085_09425 PF00295 Glycosyl hydrolases family 28 LR085_09445 PF00753 Metallo-beta-lactamase superfamily LR085_09455 PF05985 Ethanolamine ammonia-lyase light chain (EutC) LR085_09460 PF06751 Ethanolamine ammonia lyase large subunit (EutB) LR085_09470 PF01551 Peptidase family M23 LR085_09470 PF08460 Bacterial SH3 domain LR085_09475 PF01979 Amidohydrolase family LR085_09485 PF01258 Prokaryotic dksA/traR C4-type zinc finger LR085_09500 PF07690 Major Facilitator Superfamily LR085_09505 PF02657 Fe-S metabolism associated domain LR085_09510 PF09190 DALR domain LR085_09510 PF01406 tRNA synthetases class I (C) catalytic domain LR085_09520 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LR085_09520 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LR085_09530 PF00764 Arginosuccinate synthase LR085_09535 PF01546 Peptidase family M20/M25/M40 LR085_09535 PF07687 Peptidase dimerisation domain LR085_09540 PF00696 Amino acid kinase family LR085_09540 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase LR085_09550 PF01118 Semialdehyde dehydrogenase, NAD binding domain LR085_09555 PF00206 Lyase LR085_09570 PF01472 PUA domain LR085_09570 PF00696 Amino acid kinase family LR085_09575 PF00171 Aldehyde dehydrogenase family LR085_09585 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LR085_09585 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain LR085_09605 PF02322 Cytochrome bd terminal oxidase subunit II LR085_09610 PF01654 Cytochrome bd terminal oxidase subunit I LR085_09615 PF00664 ABC transporter transmembrane region LR085_09615 PF00005 ABC transporter LR085_09620 PF00664 ABC transporter transmembrane region LR085_09620 PF00005 ABC transporter LR085_09630 PF00561 alpha/beta hydrolase fold LR085_09645 PF03918 Cytochrome C biogenesis protein LR085_09650 PF08534 Redoxin LR085_09655 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LR085_09655 PF01578 Cytochrome C assembly protein LR085_09660 PF03100 CcmE LR085_09670 PF01578 Cytochrome C assembly protein LR085_09675 PF03379 CcmB protein LR085_09680 PF00005 ABC transporter LR085_09685 PF00155 Aminotransferase class I and II LR085_09690 PF00795 Carbon-nitrogen hydrolase LR085_09710 PF01479 S4 domain LR085_09710 PF00849 RNA pseudouridylate synthase LR085_09715 PF04079 Segregation and condensation complex subunit ScpB LR085_09720 PF02616 Segregation and condensation protein ScpA LR085_09725 PF03795 YCII-related domain LR085_09735 PF00356 Bacterial regulatory proteins, lacI family LR085_09750 PF13416 Bacterial extracellular solute-binding protein LR085_09755 PF00528 Binding-protein-dependent transport system inner membrane component LR085_09760 PF00528 Binding-protein-dependent transport system inner membrane component LR085_09785 PF00795 Carbon-nitrogen hydrolase LR085_09790 PF04371 Porphyromonas-type peptidyl-arginine deiminase LR085_09800 PF00444 Ribosomal protein L36 LR085_09805 PF02224 Cytidylate kinase LR085_09810 PF00575 S1 RNA binding domain LR085_09815 PF00216 Bacterial DNA-binding protein LR085_09825 PF18073 Rubredoxin metal binding domain LR085_09830 PF00953 Glycosyl transferase family 4 LR085_09835 PF02719 Polysaccharide biosynthesis protein LR085_09840 PF00483 Nucleotidyl transferase LR085_09845 PF02254 TrkA-N domain LR085_09845 PF00999 Sodium/hydrogen exchanger family LR085_09855 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LR085_09855 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LR085_09860 PF00571 CBS domain LR085_09860 PF00478 IMP dehydrogenase / GMP reductase domain LR085_09870 PF00958 GMP synthase C terminal domain LR085_09870 PF02540 NAD synthase LR085_09870 PF00117 Glutamine amidotransferase class-I LR085_09885 PF00072 Response regulator receiver domain LR085_09885 PF00196 Bacterial regulatory proteins, luxR family LR085_09890 PF07730 Histidine kinase LR085_09890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_09890 PF13492 GAF domain LR085_09890 PF13185 GAF domain LR085_09900 PF00857 Isochorismatase family LR085_09910 PF07969 Amidohydrolase family LR085_09915 PF05977 Transmembrane secretion effector LR085_09925 PF00561 alpha/beta hydrolase fold LR085_09930 PF01566 Natural resistance-associated macrophage protein LR085_09935 PF02742 Iron dependent repressor, metal binding and dimerisation domain LR085_09935 PF01325 Iron dependent repressor, N-terminal DNA binding domain LR085_09940 PF14437 MafB19-like deaminase LR085_09945 PF00929 Exonuclease LR085_09950 PF05552 Conserved TM helix LR085_09950 PF00924 Mechanosensitive ion channel LR085_09955 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LR085_09955 PF02896 PEP-utilising enzyme, TIM barrel domain LR085_09955 PF00391 PEP-utilising enzyme, mobile domain LR085_09960 PF03618 Kinase/pyrophosphorylase LR085_09980 PF01066 CDP-alcohol phosphatidyltransferase LR085_09990 PF00561 alpha/beta hydrolase fold LR085_10005 PF00355 Rieske [2Fe-2S] domain LR085_10005 PF01266 FAD dependent oxidoreductase LR085_10015 PF09371 Tex-like protein N-terminal domain LR085_10015 PF17674 HHH domain LR085_10015 PF16921 Tex protein YqgF-like domain LR085_10015 PF00575 S1 RNA binding domain LR085_10020 PF08448 PAS fold LR085_10020 PF00990 Diguanylate cyclase, GGDEF domain LR085_10020 PF08447 PAS fold LR085_10020 PF00563 EAL domain LR085_10060 PF00034 Cytochrome c LR085_10070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LR085_10075 PF00873 AcrB/AcrD/AcrF family LR085_10080 PF00873 AcrB/AcrD/AcrF family LR085_10085 PF01081 KDPG and KHG aldolase LR085_10090 PF00920 Dehydratase family LR085_10095 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LR085_10100 PF02685 Glucokinase LR085_10105 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LR085_10105 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LR085_10110 PF00005 ABC transporter LR085_10110 PF17912 MalK OB fold domain LR085_10115 PF01571 Aminomethyltransferase folate-binding domain LR085_10125 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LR085_10130 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LR085_10135 PF00890 FAD binding domain LR085_10135 PF02910 Fumarate reductase flavoprotein C-term LR085_10145 PF13085 2Fe-2S iron-sulfur cluster binding domain LR085_10150 PF03937 Flavinator of succinate dehydrogenase LR085_10160 PF02687 FtsX-like permease family LR085_10160 PF12704 MacB-like periplasmic core domain LR085_10165 PF00005 ABC transporter LR085_10175 PF03772 Competence protein LR085_10175 PF00753 Metallo-beta-lactamase superfamily LR085_10180 PF01618 MotA/TolQ/ExbB proton channel family LR085_10190 PF00664 ABC transporter transmembrane region LR085_10190 PF00005 ABC transporter LR085_10195 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LR085_10200 PF02348 Cytidylyltransferase LR085_10205 PF01451 Low molecular weight phosphotyrosine protein phosphatase LR085_10215 PF02151 UvrB/uvrC motif LR085_10215 PF01541 GIY-YIG catalytic domain LR085_10215 PF08459 UvrC Helix-hairpin-helix N-terminal LR085_10220 PF01066 CDP-alcohol phosphatidyltransferase LR085_10240 PF13356 Arm DNA-binding domain LR085_10240 PF00589 Phage integrase family LR085_10250 PF05394 Avirulence protein LR085_10295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_10295 PF03466 LysR substrate binding domain LR085_10380 PF04002 RadC-like JAB domain LR085_10480 PF00580 UvrD/REP helicase N-terminal domain LR085_10480 PF13361 UvrD-like helicase C-terminal domain LR085_10545 PF13406 Transglycosylase SLT domain LR085_10560 PF00202 Aminotransferase class-III LR085_10580 PF01131 DNA topoisomerase LR085_10580 PF01751 Toprim domain LR085_10585 PF00436 Single-strand binding protein family LR085_10620 PF13614 AAA domain LR085_10645 PF10544 T5orf172 domain LR085_10685 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LR085_10685 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LR085_10685 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LR085_10695 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LR085_10705 PF00581 Rhodanese-like domain LR085_10705 PF17773 UPF0176 acylphosphatase like domain LR085_10710 PF00072 Response regulator receiver domain LR085_10710 PF00196 Bacterial regulatory proteins, luxR family LR085_10715 PF13700 Domain of unknown function (DUF4158) LR085_10715 PF01526 Tn3 transposase DDE domain LR085_10735 PF02203 Tar ligand binding domain homologue LR085_10735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_10735 PF00672 HAMP domain LR085_10750 PF02303 Helix-destabilising protein LR085_10755 PF17091 Inovirus G7P protein LR085_10825 PF17091 Inovirus G7P protein LR085_10830 PF02303 Helix-destabilising protein LR085_10855 PF01106 NifU-like domain LR085_10860 PF01329 Pterin 4 alpha carbinolamine dehydratase LR085_10870 PF02535 ZIP Zinc transporter LR085_10875 PF01479 S4 domain LR085_10875 PF00849 RNA pseudouridylate synthase LR085_10880 PF00575 S1 RNA binding domain LR085_10880 PF10150 Ribonuclease E/G family LR085_10880 PF12111 Polyribonucleotide phosphorylase C terminal LR085_10885 PF00672 HAMP domain LR085_10885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_10885 PF02203 Tar ligand binding domain homologue LR085_10905 PF01526 Tn3 transposase DDE domain LR085_10905 PF13700 Domain of unknown function (DUF4158) LR085_10930 PF04397 LytTr DNA-binding domain LR085_10930 PF00072 Response regulator receiver domain LR085_10940 PF00512 His Kinase A (phospho-acceptor) domain LR085_10940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_10940 PF13188 PAS domain LR085_10940 PF00072 Response regulator receiver domain LR085_10940 PF08448 PAS fold LR085_10945 PF00072 Response regulator receiver domain LR085_10945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_10945 PF13426 PAS domain LR085_10950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_10950 PF00672 HAMP domain LR085_10950 PF02203 Tar ligand binding domain homologue LR085_10990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_10990 PF00672 HAMP domain LR085_10990 PF02203 Tar ligand binding domain homologue LR085_10995 PF07660 Secretin and TonB N terminus short domain LR085_10995 PF00593 TonB dependent receptor LR085_10995 PF07715 TonB-dependent Receptor Plug Domain LR085_11000 PF09335 SNARE associated Golgi protein LR085_11030 PF01638 HxlR-like helix-turn-helix LR085_11045 PF02630 SCO1/SenC LR085_11060 PF01431 Peptidase family M13 LR085_11060 PF05649 Peptidase family M13 LR085_11075 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LR085_11080 PF07995 Glucose / Sorbosone dehydrogenase LR085_11090 PF00512 His Kinase A (phospho-acceptor) domain LR085_11090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_11090 PF01590 GAF domain LR085_11090 PF00360 Phytochrome region LR085_11090 PF08446 PAS fold LR085_11125 PF12951 Passenger-associated-transport-repeat LR085_11125 PF12951 Passenger-associated-transport-repeat LR085_11135 PF08447 PAS fold LR085_11135 PF00990 Diguanylate cyclase, GGDEF domain LR085_11135 PF00563 EAL domain LR085_11135 PF08448 PAS fold LR085_11145 PF00072 Response regulator receiver domain LR085_11145 PF01339 CheB methylesterase LR085_11150 PF05974 Domain of unknown function (DUF892) LR085_11165 PF01266 FAD dependent oxidoreductase LR085_11175 PF00483 Nucleotidyl transferase LR085_11185 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LR085_11200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LR085_11205 PF04324 BFD-like [2Fe-2S] binding domain LR085_11205 PF01568 Molydopterin dinucleotide binding domain LR085_11205 PF00384 Molybdopterin oxidoreductase LR085_11205 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LR085_11210 PF11723 Homotrimeric ring hydroxylase LR085_11210 PF00355 Rieske [2Fe-2S] domain LR085_11215 PF04324 BFD-like [2Fe-2S] binding domain LR085_11215 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LR085_11215 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LR085_11215 PF07992 Pyridine nucleotide-disulphide oxidoreductase LR085_11215 PF18267 Rubredoxin NAD+ reductase C-terminal domain LR085_11220 PF07690 Major Facilitator Superfamily LR085_11230 PF03861 ANTAR domain LR085_11230 PF00072 Response regulator receiver domain LR085_11235 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LR085_11235 PF14824 Sirohaem biosynthesis protein central LR085_11235 PF10414 Sirohaem synthase dimerisation region LR085_11245 PF12804 MobA-like NTP transferase domain LR085_11250 PF03454 MoeA C-terminal region (domain IV) LR085_11250 PF03453 MoeA N-terminal region (domain I and II) LR085_11250 PF00994 Probable molybdopterin binding domain LR085_11260 PF03372 Endonuclease/Exonuclease/phosphatase family LR085_11270 PF13823 Alcohol dehydrogenase GroES-associated LR085_11270 PF00107 Zinc-binding dehydrogenase LR085_11270 PF08240 Alcohol dehydrogenase GroES-like domain LR085_11285 PF00067 Cytochrome P450 LR085_11290 PF00106 short chain dehydrogenase LR085_11305 PF00899 ThiF family LR085_11310 PF00994 Probable molybdopterin binding domain LR085_11310 PF03454 MoeA C-terminal region (domain IV) LR085_11310 PF03453 MoeA N-terminal region (domain I and II) LR085_11315 PF01926 50S ribosome-binding GTPase LR085_11315 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LR085_11320 PF01011 PQQ enzyme repeat LR085_11320 PF13360 PQQ-like domain LR085_11330 PF13464 Domain of unknown function (DUF4115) LR085_11340 PF04055 Radical SAM superfamily LR085_11345 PF00334 Nucleoside diphosphate kinase LR085_11360 PF00108 Thiolase, N-terminal domain LR085_11360 PF02803 Thiolase, C-terminal domain LR085_11365 PF00654 Voltage gated chloride channel LR085_11370 PF16193 AAA C-terminal domain LR085_11370 PF12002 MgsA AAA+ ATPase C terminal LR085_11370 PF00004 ATPase family associated with various cellular activities (AAA) LR085_11380 PF03548 Outer membrane lipoprotein carrier protein LolA LR085_11390 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LR085_11390 PF17854 FtsK alpha domain LR085_11390 PF09397 Ftsk gamma domain LR085_11390 PF01580 FtsK/SpoIIIE family LR085_11395 PF07992 Pyridine nucleotide-disulphide oxidoreductase LR085_11405 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LR085_11410 PF01176 Translation initiation factor 1A / IF-1 LR085_11415 PF07724 AAA domain (Cdc48 subfamily) LR085_11415 PF17871 AAA lid domain LR085_11415 PF02861 Clp amino terminal domain, pathogenicity island component LR085_11415 PF10431 C-terminal, D2-small domain, of ClpB protein LR085_11415 PF00004 ATPase family associated with various cellular activities (AAA) LR085_11420 PF02617 ATP-dependent Clp protease adaptor protein ClpS LR085_11425 PF00293 NUDIX domain LR085_11435 PF04356 Protein of unknown function (DUF489) LR085_11440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_11440 PF00672 HAMP domain LR085_11440 PF12729 Four helix bundle sensory module for signal transduction LR085_11455 PF03707 Bacterial signalling protein N terminal repeat LR085_11455 PF00990 Diguanylate cyclase, GGDEF domain LR085_11455 PF00563 EAL domain LR085_11460 PF07730 Histidine kinase LR085_11460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_11465 PF00563 EAL domain LR085_11465 PF03707 Bacterial signalling protein N terminal repeat LR085_11465 PF00990 Diguanylate cyclase, GGDEF domain LR085_11470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_11470 PF00512 His Kinase A (phospho-acceptor) domain LR085_11490 PF01584 CheW-like domain LR085_11490 PF00072 Response regulator receiver domain LR085_11500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LR085_11500 PF00460 Flagella basal body rod protein LR085_11505 PF03963 Flagellar hook capping protein - N-terminal region LR085_11510 PF00460 Flagella basal body rod protein LR085_11510 PF07559 Flagellar basal body protein FlaE LR085_11510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LR085_11515 PF00460 Flagella basal body rod protein LR085_11515 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LR085_11520 PF00460 Flagella basal body rod protein LR085_11520 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LR085_11525 PF02107 Flagellar L-ring protein LR085_11530 PF02119 Flagellar P-ring protein LR085_11535 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LR085_11535 PF10135 Rod binding protein LR085_11540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LR085_11540 PF07196 Flagellin hook IN motif LR085_11545 PF00669 Bacterial flagellin N-terminal helical region LR085_11550 PF00700 Bacterial flagellin C-terminal helical region LR085_11550 PF00669 Bacterial flagellin N-terminal helical region LR085_11555 PF07196 Flagellin hook IN motif LR085_11555 PF07195 Flagellar hook-associated protein 2 C-terminus LR085_11555 PF02465 Flagellar hook-associated protein 2 N-terminus LR085_11560 PF02561 Flagellar protein FliS LR085_11575 PF00072 Response regulator receiver domain LR085_11575 PF00196 Bacterial regulatory proteins, luxR family LR085_11580 PF04963 Sigma-54 factor, core binding domain LR085_11580 PF00309 Sigma-54 factor, Activator interacting domain (AID) LR085_11580 PF04552 Sigma-54, DNA binding domain LR085_11585 PF01339 CheB methylesterase LR085_11585 PF00072 Response regulator receiver domain LR085_11595 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LR085_11615 PF00535 Glycosyl transferase family 2 LR085_11620 PF02049 Flagellar hook-basal body complex protein FliE LR085_11625 PF08345 Flagellar M-ring protein C-terminal LR085_11625 PF01514 Secretory protein of YscJ/FliF family LR085_11630 PF01706 FliG C-terminal domain LR085_11630 PF14842 FliG N-terminal domain LR085_11630 PF14841 FliG middle domain LR085_11640 PF18269 T3SS EscN ATPase C-terminal domain LR085_11640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LR085_11660 PF02154 Flagellar motor switch protein FliM LR085_11660 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LR085_11665 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LR085_11670 PF04347 Flagellar biosynthesis protein, FliO LR085_11680 PF01313 Bacterial export proteins, family 3 LR085_11685 PF01311 Bacterial export proteins, family 1 LR085_11690 PF00990 Diguanylate cyclase, GGDEF domain LR085_11695 PF00990 Diguanylate cyclase, GGDEF domain LR085_11700 PF00990 Diguanylate cyclase, GGDEF domain LR085_11700 PF03707 Bacterial signalling protein N terminal repeat LR085_11700 PF00563 EAL domain LR085_11705 PF01312 FlhB HrpN YscU SpaS Family LR085_11710 PF00771 FHIPEP family LR085_11715 PF00448 SRP54-type protein, GTPase domain LR085_11720 PF10609 NUBPL iron-transfer P-loop NTPase LR085_11725 PF04542 Sigma-70 region 2 LR085_11725 PF04539 Sigma-70 region 3 LR085_11725 PF04545 Sigma-70, region 4 LR085_11730 PF00072 Response regulator receiver domain LR085_11735 PF04344 Chemotaxis phosphatase, CheZ LR085_11740 PF00072 Response regulator receiver domain LR085_11740 PF01627 Hpt domain LR085_11740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_11740 PF02895 Signal transducing histidine kinase, homodimeric domain LR085_11740 PF01584 CheW-like domain LR085_11835 PF01618 MotA/TolQ/ExbB proton channel family LR085_11840 PF00691 OmpA family LR085_11840 PF13677 Membrane MotB of proton-channel complex MotA/MotB LR085_11845 PF13614 AAA domain LR085_11850 PF01584 CheW-like domain LR085_11860 PF00072 Response regulator receiver domain LR085_11865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_11865 PF01627 Hpt domain LR085_11865 PF02895 Signal transducing histidine kinase, homodimeric domain LR085_11865 PF01584 CheW-like domain LR085_11865 PF09078 CheY binding LR085_11870 PF17202 Single cache domain 3 LR085_11870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_11870 PF00672 HAMP domain LR085_11890 PF00672 HAMP domain LR085_11890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_11890 PF02203 Tar ligand binding domain homologue LR085_11895 PF00672 HAMP domain LR085_11895 PF02203 Tar ligand binding domain homologue LR085_11895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_11900 PF02203 Tar ligand binding domain homologue LR085_11900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_11900 PF00672 HAMP domain LR085_11905 PF00672 HAMP domain LR085_11905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_11905 PF02203 Tar ligand binding domain homologue LR085_11910 PF02203 Tar ligand binding domain homologue LR085_11910 PF00672 HAMP domain LR085_11910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_11915 PF02203 Tar ligand binding domain homologue LR085_11915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_11915 PF00672 HAMP domain LR085_11930 PF00672 HAMP domain LR085_11930 PF02203 Tar ligand binding domain homologue LR085_11930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_11935 PF07238 PilZ domain LR085_11935 PF07317 Flagellar regulator YcgR LR085_11940 PF01584 CheW-like domain LR085_11950 PF00672 HAMP domain LR085_11950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_11950 PF02203 Tar ligand binding domain homologue LR085_11955 PF01739 CheR methyltransferase, SAM binding domain LR085_11955 PF03705 CheR methyltransferase, all-alpha domain LR085_11960 PF03975 CheD chemotactic sensory transduction LR085_11965 PF01339 CheB methylesterase LR085_11965 PF00072 Response regulator receiver domain LR085_11970 PF00563 EAL domain LR085_11970 PF03707 Bacterial signalling protein N terminal repeat LR085_11970 PF00990 Diguanylate cyclase, GGDEF domain LR085_11975 PF00561 alpha/beta hydrolase fold LR085_11980 PF06434 Aconitate hydratase 2 N-terminus LR085_11980 PF00330 Aconitase family (aconitate hydratase) LR085_11980 PF11791 Aconitate B N-terminal domain LR085_11995 PF00330 Aconitase family (aconitate hydratase) LR085_11995 PF00694 Aconitase C-terminal domain LR085_12005 PF13193 AMP-binding enzyme C-terminal domain LR085_12005 PF00501 AMP-binding enzyme LR085_12010 PF00378 Enoyl-CoA hydratase/isomerase LR085_12015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_12015 PF00512 His Kinase A (phospho-acceptor) domain LR085_12015 PF01627 Hpt domain LR085_12015 PF00072 Response regulator receiver domain LR085_12020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_12020 PF00512 His Kinase A (phospho-acceptor) domain LR085_12020 PF00072 Response regulator receiver domain LR085_12020 PF01627 Hpt domain LR085_12025 PF00072 Response regulator receiver domain LR085_12030 PF00152 tRNA synthetases class II (D, K and N) LR085_12030 PF01336 OB-fold nucleic acid binding domain LR085_12040 PF04397 LytTr DNA-binding domain LR085_12040 PF00072 Response regulator receiver domain LR085_12060 PF01368 DHH family LR085_12060 PF02272 DHHA1 domain LR085_12060 PF17768 RecJ OB domain LR085_12070 PF01272 Transcription elongation factor, GreA/GreB, C-term LR085_12070 PF03449 Transcription elongation factor, N-terminal LR085_12075 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LR085_12075 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LR085_12075 PF02142 MGS-like domain LR085_12085 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LR085_12085 PF00117 Glutamine amidotransferase class-I LR085_12090 PF05173 Dihydrodipicolinate reductase, C-terminus LR085_12090 PF01113 Dihydrodipicolinate reductase, N-terminus LR085_12095 PF03475 3-alpha domain LR085_12095 PF03473 MOSC domain LR085_12100 PF00155 Aminotransferase class I and II LR085_12115 PF07664 Ferrous iron transport protein B C terminus LR085_12115 PF07670 Nucleoside recognition LR085_12115 PF02421 Ferrous iron transport protein B LR085_12125 PF00378 Enoyl-CoA hydratase/isomerase LR085_12130 PF00682 HMGL-like LR085_12135 PF00106 short chain dehydrogenase LR085_12140 PF09285 Elongation factor P, C-terminal LR085_12140 PF08207 Elongation factor P (EF-P) KOW-like domain LR085_12140 PF01132 Elongation factor P (EF-P) OB domain LR085_12160 PF02913 FAD linked oxidases, C-terminal domain LR085_12160 PF01565 FAD binding domain LR085_12165 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LR085_12165 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LR085_12180 PF13520 Amino acid permease LR085_12185 PF13520 Amino acid permease LR085_12190 PF00596 Class II Aldolase and Adducin N-terminal domain LR085_12195 PF03079 ARD/ARD' family LR085_12215 PF01502 Phosphoribosyl-AMP cyclohydrolase LR085_12215 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LR085_12220 PF00977 Histidine biosynthesis protein LR085_12225 PF00977 Histidine biosynthesis protein LR085_12230 PF00117 Glutamine amidotransferase class-I LR085_12235 PF00475 Imidazoleglycerol-phosphate dehydratase LR085_12240 PF00155 Aminotransferase class I and II LR085_12245 PF00815 Histidinol dehydrogenase LR085_12250 PF01634 ATP phosphoribosyltransferase LR085_12250 PF08029 HisG, C-terminal domain LR085_12260 PF03129 Anticodon binding domain LR085_12260 PF13393 Histidyl-tRNA synthetase LR085_12265 PF00027 Cyclic nucleotide-binding domain LR085_12265 PF13545 Crp-like helix-turn-helix domain LR085_12275 PF00291 Pyridoxal-phosphate dependent enzyme LR085_12275 PF14821 Threonine synthase N terminus LR085_12285 PF00288 GHMP kinases N terminal domain LR085_12285 PF08544 GHMP kinases C terminal LR085_12290 PF01842 ACT domain LR085_12290 PF13840 ACT domain LR085_12290 PF00742 Homoserine dehydrogenase LR085_12290 PF03447 Homoserine dehydrogenase, NAD binding domain LR085_12290 PF00696 Amino acid kinase family LR085_12300 PF03073 TspO/MBR family LR085_12330 PF00171 Aldehyde dehydrogenase family LR085_12345 PF01180 Dihydroorotate dehydrogenase LR085_12350 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LR085_12350 PF01565 FAD binding domain LR085_12355 PF00892 EamA-like transporter family LR085_12360 PF01177 Asp/Glu/Hydantoin racemase LR085_12370 PF01569 PAP2 superfamily LR085_12375 PF04551 GcpE protein LR085_12385 PF00072 Response regulator receiver domain LR085_12390 PF02013 Cellulose or protein binding domain LR085_12390 PF00150 Cellulase (glycosyl hydrolase family 5) LR085_12395 PF00990 Diguanylate cyclase, GGDEF domain LR085_12395 PF00360 Phytochrome region LR085_12395 PF01590 GAF domain LR085_12395 PF00563 EAL domain LR085_12400 PF00474 Sodium:solute symporter family LR085_12405 PF14310 Fibronectin type III-like domain LR085_12405 PF00933 Glycosyl hydrolase family 3 N terminal domain LR085_12405 PF01915 Glycosyl hydrolase family 3 C-terminal domain LR085_12420 PF00342 Phosphoglucose isomerase LR085_12425 PF02261 Aspartate decarboxylase LR085_12430 PF02569 Pantoate-beta-alanine ligase LR085_12435 PF02548 Ketopantoate hydroxymethyltransferase LR085_12440 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LR085_12445 PF01743 Poly A polymerase head domain LR085_12445 PF12626 Polymerase A arginine-rich C-terminus LR085_12445 PF12627 Probable RNA and SrmB- binding site of polymerase A LR085_12455 PF02649 Type I GTP cyclohydrolase folE2 LR085_12460 PF01520 N-acetylmuramoyl-L-alanine amidase LR085_12475 PF00083 Sugar (and other) transporter LR085_12485 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LR085_12485 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LR085_12495 PF16338 Domain of unknown function (DUF4968) LR085_12495 PF17137 Domain of unknown function (DUF5110) LR085_12495 PF01055 Glycosyl hydrolases family 31 LR085_12515 PF00942 Cellulose binding domain LR085_12515 PF03442 Carbohydrate binding domain X2 LR085_12530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_12530 PF03466 LysR substrate binding domain LR085_12535 PF01081 KDPG and KHG aldolase LR085_12540 PF13378 Enolase C-terminal domain-like LR085_12540 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LR085_12545 PF08450 SMP-30/Gluconolactonase/LRE-like region LR085_12550 PF05035 2-keto-3-deoxy-galactonokinase LR085_12555 PF11953 Domain of unknown function (DUF3470) LR085_12555 PF00037 4Fe-4S binding domain LR085_12565 PF00701 Dihydrodipicolinate synthetase family LR085_12580 PF00578 AhpC/TSA family LR085_12585 PF02562 PhoH-like protein LR085_12585 PF13638 PIN domain LR085_12595 PF08543 Phosphomethylpyrimidine kinase LR085_12595 PF02581 Thiamine monophosphate synthase LR085_12620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_12620 PF03466 LysR substrate binding domain LR085_12625 PF02678 Pirin LR085_12625 PF17954 Quercetinase C-terminal cupin domain LR085_12630 PF13426 PAS domain LR085_12630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LR085_12630 PF08447 PAS fold LR085_12640 PF02599 Global regulator protein family LR085_12645 PF02272 DHHA1 domain LR085_12645 PF01411 tRNA synthetases class II (A) LR085_12645 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LR085_12650 PF02631 RecX family LR085_12655 PF00154 recA bacterial DNA recombination protein LR085_12660 PF00717 Peptidase S24-like LR085_12660 PF01726 LexA DNA binding domain LR085_12665 PF03109 ABC1 family LR085_12670 PF07715 TonB-dependent Receptor Plug Domain LR085_12670 PF00593 TonB dependent receptor LR085_12680 PF02464 Competence-damaged protein LR085_12685 PF16360 GTP-binding GTPase Middle Region LR085_12685 PF13167 GTP-binding GTPase N-terminal LR085_12685 PF01926 50S ribosome-binding GTPase LR085_12690 PF17209 Hfq protein LR085_12700 PF00809 Pterin binding enzyme LR085_12705 PF01434 Peptidase family M41 LR085_12705 PF17862 AAA+ lid domain LR085_12705 PF06480 FtsH Extracellular LR085_12705 PF00004 ATPase family associated with various cellular activities (AAA) LR085_12710 PF01728 FtsJ-like methyltransferase LR085_12715 PF01985 CRS1 / YhbY (CRM) domain LR085_12725 PF01551 Peptidase family M23 LR085_12725 PF01476 LysM domain LR085_12730 PF09335 SNARE associated Golgi protein LR085_12740 PF01975 Survival protein SurE LR085_12745 PF01713 Smr domain LR085_12755 PF01142 tRNA pseudouridine synthase D (TruD) LR085_12760 PF02542 YgbB family LR085_12765 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LR085_12770 PF04977 Septum formation initiator LR085_12775 PF00113 Enolase, C-terminal TIM barrel domain LR085_12775 PF03952 Enolase, N-terminal domain LR085_12785 PF00793 DAHP synthetase I family LR085_12790 PF06418 CTP synthase N-terminus LR085_12790 PF00117 Glutamine amidotransferase class-I LR085_12800 PF00204 DNA gyrase B LR085_12800 PF00986 DNA gyrase B subunit, carboxyl terminus LR085_12800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_12800 PF01751 Toprim domain LR085_12805 PF02611 CDP-diacylglycerol pyrophosphatase LR085_12820 PF01384 Phosphate transporter family LR085_12830 PF01595 Cyclin M transmembrane N-terminal domain LR085_12830 PF03471 Transporter associated domain LR085_12830 PF00571 CBS domain LR085_12850 PF07690 Major Facilitator Superfamily LR085_12875 PF00534 Glycosyl transferases group 1 LR085_12875 PF13579 Glycosyl transferase 4-like domain LR085_12880 PF00534 Glycosyl transferases group 1 LR085_12880 PF13439 Glycosyltransferase Family 4 LR085_12890 PF01979 Amidohydrolase family LR085_12890 PF13382 Adenine deaminase C-terminal domain LR085_12910 PF00535 Glycosyl transferase family 2 LR085_12915 PF01943 Polysaccharide biosynthesis protein LR085_12920 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LR085_12925 PF05523 WxcM-like, C-terminal LR085_12930 PF01292 Prokaryotic cytochrome b561 LR085_12940 PF00034 Cytochrome c LR085_12950 PF08281 Sigma-70, region 4 LR085_12950 PF04542 Sigma-70 region 2 LR085_12960 PF00082 Subtilase family LR085_12965 PF01578 Cytochrome C assembly protein LR085_12970 PF04995 Heme exporter protein D (CcmD) LR085_12975 PF03100 CcmE LR085_12980 PF01578 Cytochrome C assembly protein LR085_12980 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LR085_12985 PF08534 Redoxin LR085_12990 PF03918 Cytochrome C biogenesis protein LR085_13000 PF13426 PAS domain LR085_13000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_13000 PF00072 Response regulator receiver domain LR085_13005 PF06745 KaiC LR085_13010 PF00072 Response regulator receiver domain LR085_13010 PF00158 Sigma-54 interaction domain LR085_13010 PF02954 Bacterial regulatory protein, Fis family LR085_13015 PF00512 His Kinase A (phospho-acceptor) domain LR085_13015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_13015 PF00072 Response regulator receiver domain LR085_13015 PF13188 PAS domain LR085_13015 PF08448 PAS fold LR085_13055 PF02585 GlcNAc-PI de-N-acetylase LR085_13195 PF04002 RadC-like JAB domain LR085_13320 PF02534 Type IV secretory system Conjugative DNA transfer LR085_13410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_13410 PF03466 LysR substrate binding domain LR085_13435 PF04002 RadC-like JAB domain LR085_13465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_13465 PF03466 LysR substrate binding domain LR085_13470 PF02403 Seryl-tRNA synthetase N-terminal domain LR085_13470 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LR085_13475 PF03544 Gram-negative bacterial TonB protein C-terminal LR085_13480 PF03544 Gram-negative bacterial TonB protein C-terminal LR085_13485 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LR085_13490 PF01842 ACT domain LR085_13490 PF01817 Chorismate mutase type II LR085_13490 PF00800 Prephenate dehydratase LR085_13495 PF00266 Aminotransferase class-V LR085_13500 PF00174 Oxidoreductase molybdopterin binding domain LR085_13505 PF01794 Ferric reductase like transmembrane component LR085_13530 PF07702 UTRA domain LR085_13530 PF00392 Bacterial regulatory proteins, gntR family LR085_13540 PF01979 Amidohydrolase family LR085_13545 PF00221 Aromatic amino acid lyase LR085_13555 PF17392 Urocanase C-terminal domain LR085_13555 PF17391 Urocanase N-terminal domain LR085_13555 PF01175 Urocanase Rossmann-like domain LR085_13565 PF13360 PQQ-like domain LR085_13570 PF03989 DNA gyrase C-terminal domain, beta-propeller LR085_13570 PF00521 DNA gyrase/topoisomerase IV, subunit A LR085_13575 PF01008 Initiation factor 2 subunit family LR085_13585 PF00152 tRNA synthetases class II (D, K and N) LR085_13600 PF04354 ZipA, C-terminal FtsZ-binding domain LR085_13605 PF02463 RecF/RecN/SMC N terminal domain LR085_13615 PF03948 Ribosomal protein L9, C-terminal domain LR085_13615 PF01281 Ribosomal protein L9, N-terminal domain LR085_13620 PF01084 Ribosomal protein S18 LR085_13625 PF01250 Ribosomal protein S6 LR085_13630 PF01521 Iron-sulphur cluster biosynthesis LR085_13635 PF00152 tRNA synthetases class II (D, K and N) LR085_13635 PF01336 OB-fold nucleic acid binding domain LR085_13660 PF00484 Carbonic anhydrase LR085_13665 PF06052 3-hydroxyanthranilic acid dioxygenase LR085_13675 PF00266 Aminotransferase class-V LR085_13680 PF01494 FAD binding domain LR085_13685 PF08411 Exonuclease C-terminal LR085_13685 PF00929 Exonuclease LR085_13710 PF01513 ATP-NAD kinase LR085_13715 PF02926 THUMP domain LR085_13715 PF10672 S-adenosylmethionine-dependent methyltransferase LR085_13715 PF01170 Putative RNA methylase family UPF0020 LR085_13720 PF00005 ABC transporter LR085_13720 PF12848 ABC transporter LR085_13755 PF00581 Rhodanese-like domain LR085_13760 PF00293 NUDIX domain LR085_13765 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LR085_13765 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LR085_13770 PF00378 Enoyl-CoA hydratase/isomerase LR085_13780 PF10576 Iron-sulfur binding domain of endonuclease III LR085_13780 PF00633 Helix-hairpin-helix motif LR085_13780 PF00730 HhH-GPD superfamily base excision DNA repair protein LR085_13785 PF01740 STAS domain LR085_13785 PF00916 Sulfate permease family LR085_13790 PF00484 Carbonic anhydrase LR085_13805 PF12849 PBP superfamily domain LR085_13810 PF12849 PBP superfamily domain LR085_13815 PF00528 Binding-protein-dependent transport system inner membrane component LR085_13820 PF00528 Binding-protein-dependent transport system inner membrane component LR085_13825 PF00005 ABC transporter LR085_13830 PF01895 PhoU domain LR085_13840 PF00929 Exonuclease LR085_13850 PF00588 SpoU rRNA Methylase family LR085_13850 PF08032 RNA 2'-O ribose methyltransferase substrate binding LR085_13865 PF17876 Cold shock domain LR085_13865 PF08461 Ribonuclease R winged-helix domain LR085_13865 PF08206 Ribonuclease B OB domain LR085_13865 PF00773 RNB domain LR085_13865 PF00575 S1 RNA binding domain LR085_13880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LR085_13880 PF02770 Acyl-CoA dehydrogenase, middle domain LR085_13880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LR085_13885 PF01209 ubiE/COQ5 methyltransferase family LR085_13890 PF02574 Homocysteine S-methyltransferase LR085_13890 PF00809 Pterin binding enzyme LR085_13895 PF02310 B12 binding domain LR085_13895 PF02607 B12 binding domain LR085_13895 PF02965 Vitamin B12 dependent methionine synthase, activation domain LR085_13895 PF00809 Pterin binding enzyme LR085_13895 PF02574 Homocysteine S-methyltransferase LR085_13905 PF00294 pfkB family carbohydrate kinase LR085_13910 PF07690 Major Facilitator Superfamily LR085_13915 PF00356 Bacterial regulatory proteins, lacI family LR085_13935 PF04102 SlyX LR085_13940 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LR085_13940 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LR085_13940 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LR085_13955 PF00255 Glutathione peroxidase LR085_13960 PF00392 Bacterial regulatory proteins, gntR family LR085_13965 PF00005 ABC transporter LR085_13990 PF10415 Fumarase C C-terminus LR085_13990 PF00206 Lyase LR085_14000 PF00206 Lyase LR085_14000 PF08328 Adenylosuccinate lyase C-terminal LR085_14010 PF08007 Cupin superfamily protein LR085_14020 PF02779 Transketolase, pyrimidine binding domain LR085_14020 PF16078 2-oxoglutarate dehydrogenase N-terminus LR085_14020 PF00676 Dehydrogenase E1 component LR085_14020 PF16870 2-oxoglutarate dehydrogenase C-terminal LR085_14025 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LR085_14025 PF00364 Biotin-requiring enzyme LR085_14025 PF02817 e3 binding domain LR085_14030 PF07992 Pyridine nucleotide-disulphide oxidoreductase LR085_14030 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LR085_14035 PF03641 Possible lysine decarboxylase LR085_14040 PF01205 Uncharacterized protein family UPF0029 LR085_14045 PF00664 ABC transporter transmembrane region LR085_14045 PF00005 ABC transporter LR085_14050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_14050 PF03466 LysR substrate binding domain LR085_14055 PF03412 Peptidase C39 family LR085_14055 PF00005 ABC transporter LR085_14055 PF00664 ABC transporter transmembrane region LR085_14080 PF08543 Phosphomethylpyrimidine kinase LR085_14090 PF00226 DnaJ domain LR085_14090 PF01556 DnaJ C terminal domain LR085_14090 PF00684 DnaJ central domain LR085_14095 PF00012 Hsp70 protein LR085_14100 PF01025 GrpE LR085_14105 PF01628 HrcA protein C terminal domain LR085_14105 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding LR085_14110 PF02463 RecF/RecN/SMC N terminal domain LR085_14115 PF01475 Ferric uptake regulator family LR085_14120 PF04355 SmpA / OmlA family LR085_14125 PF03658 RnfH family Ubiquitin LR085_14135 PF01668 SmpB protein LR085_14140 PF00082 Subtilase family LR085_14315 PF05598 Transposase domain (DUF772) LR085_14315 PF01609 Transposase DDE domain LR085_14365 PF00990 Diguanylate cyclase, GGDEF domain LR085_14375 PF00990 Diguanylate cyclase, GGDEF domain LR085_14380 PF02321 Outer membrane efflux protein LR085_14390 PF00873 AcrB/AcrD/AcrF family LR085_14395 PF00529 HlyD membrane-fusion protein of T1SS LR085_14395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LR085_14410 PF03466 LysR substrate binding domain LR085_14410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_14415 PF05736 OprF membrane domain LR085_14415 PF00691 OmpA family LR085_14420 PF03441 FAD binding domain of DNA photolyase LR085_14420 PF00875 DNA photolyase LR085_14425 PF00772 DnaB-like helicase N terminal domain LR085_14425 PF03796 DnaB-like helicase C terminal domain LR085_14430 PF03358 NADPH-dependent FMN reductase LR085_14435 PF00733 Asparagine synthase LR085_14435 PF13537 Glutamine amidotransferase domain LR085_14440 PF00043 Glutathione S-transferase, C-terminal domain LR085_14440 PF02798 Glutathione S-transferase, N-terminal domain LR085_14450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LR085_14450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LR085_14450 PF02770 Acyl-CoA dehydrogenase, middle domain LR085_14465 PF01026 TatD related DNase LR085_14470 PF00899 ThiF family LR085_14485 PF00313 'Cold-shock' DNA-binding domain LR085_14495 PF02253 Phospholipase A1 LR085_14500 PF00484 Carbonic anhydrase LR085_14515 PF05681 Fumarate hydratase (Fumerase) LR085_14515 PF05683 Fumarase C-terminus LR085_14525 PF00175 Oxidoreductase NAD-binding domain LR085_14525 PF00970 Oxidoreductase FAD-binding domain LR085_14530 PF00255 Glutathione peroxidase LR085_14535 PF01432 Peptidase family M3 LR085_14570 PF00854 POT family LR085_14580 PF00933 Glycosyl hydrolase family 3 N terminal domain LR085_14580 PF01915 Glycosyl hydrolase family 3 C-terminal domain LR085_14580 PF14310 Fibronectin type III-like domain LR085_14600 PF07690 Major Facilitator Superfamily LR085_14605 PF00529 HlyD membrane-fusion protein of T1SS LR085_14605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LR085_14610 PF02321 Outer membrane efflux protein LR085_14625 PF00521 DNA gyrase/topoisomerase IV, subunit A LR085_14625 PF03989 DNA gyrase C-terminal domain, beta-propeller LR085_14630 PF05724 Thiopurine S-methyltransferase (TPMT) LR085_14635 PF00210 Ferritin-like domain LR085_14640 PF01804 Penicillin amidase LR085_14645 PF07715 TonB-dependent Receptor Plug Domain LR085_14645 PF00593 TonB dependent receptor LR085_14655 PF13537 Glutamine amidotransferase domain LR085_14655 PF00733 Asparagine synthase LR085_14665 PF07687 Peptidase dimerisation domain LR085_14665 PF01546 Peptidase family M20/M25/M40 LR085_14670 PF03960 ArsC family LR085_14680 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LR085_14680 PF14602 Hexapeptide repeat of succinyl-transferase LR085_14680 PF00132 Bacterial transferase hexapeptide (six repeats) LR085_14685 PF01966 HD domain LR085_14685 PF01909 Nucleotidyltransferase domain LR085_14685 PF08335 GlnD PII-uridylyltransferase LR085_14690 PF00557 Metallopeptidase family M24 LR085_14710 PF05229 Spore Coat Protein U domain LR085_14725 PF00318 Ribosomal protein S2 LR085_14730 PF00889 Elongation factor TS LR085_14735 PF00990 Diguanylate cyclase, GGDEF domain LR085_14735 PF00072 Response regulator receiver domain LR085_14740 PF00696 Amino acid kinase family LR085_14750 PF01255 Putative undecaprenyl diphosphate synthase LR085_14760 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LR085_14760 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LR085_14760 PF13288 DXP reductoisomerase C-terminal domain LR085_14765 PF17820 PDZ domain LR085_14765 PF02163 Peptidase family M50 LR085_14770 PF01103 Surface antigen LR085_14770 PF07244 Surface antigen variable number repeat LR085_14780 PF00132 Bacterial transferase hexapeptide (six repeats) LR085_14780 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LR085_14785 PF07977 FabA-like domain LR085_14790 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LR085_14790 PF00132 Bacterial transferase hexapeptide (six repeats) LR085_14795 PF02684 Lipid-A-disaccharide synthetase LR085_14800 PF01351 Ribonuclease HII LR085_14805 PF07733 Bacterial DNA polymerase III alpha NTPase domain LR085_14805 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LR085_14805 PF14579 Helix-hairpin-helix motif LR085_14805 PF02811 PHP domain LR085_14805 PF01336 OB-fold nucleic acid binding domain LR085_14810 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LR085_14820 PF03653 Uncharacterised protein family (UPF0093) LR085_14840 PF03551 Transcriptional regulator PadR-like family LR085_14865 PF02592 Putative vitamin uptake transporter LR085_14875 PF02574 Homocysteine S-methyltransferase LR085_14880 PF00324 Amino acid permease LR085_14885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LR085_14895 PF00593 TonB dependent receptor LR085_14895 PF07715 TonB-dependent Receptor Plug Domain LR085_14900 PF01588 Putative tRNA binding domain LR085_14900 PF09334 tRNA synthetases class I (M) LR085_14910 PF04060 Putative Fe-S cluster LR085_14925 PF04542 Sigma-70 region 2 LR085_14925 PF04545 Sigma-70, region 4 LR085_14970 PF01042 Endoribonuclease L-PSP LR085_14980 PF09924 Uncharacterised conserved protein (DUF2156) LR085_14980 PF03706 Lysylphosphatidylglycerol synthase TM region LR085_15015 PF07690 Major Facilitator Superfamily LR085_15020 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LR085_15045 PF03831 PhnA domain LR085_15045 PF08274 PhnA Zinc-Ribbon LR085_15055 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LR085_15080 PF08281 Sigma-70, region 4 LR085_15080 PF04542 Sigma-70 region 2 LR085_15105 PF01258 Prokaryotic dksA/traR C4-type zinc finger LR085_15115 PF07043 Protein of unknown function (DUF1328) LR085_15120 PF01863 Protein of unknown function DUF45 LR085_15130 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LR085_15130 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LR085_15140 PF02803 Thiolase, C-terminal domain LR085_15140 PF00108 Thiolase, N-terminal domain LR085_15155 PF00072 Response regulator receiver domain LR085_15155 PF00990 Diguanylate cyclase, GGDEF domain LR085_15175 PF04679 ATP dependent DNA ligase C terminal region LR085_15175 PF01068 ATP dependent DNA ligase domain LR085_15175 PF04675 DNA ligase N terminus LR085_15185 PF04679 ATP dependent DNA ligase C terminal region LR085_15185 PF04675 DNA ligase N terminus LR085_15185 PF01068 ATP dependent DNA ligase domain LR085_15190 PF00271 Helicase conserved C-terminal domain LR085_15190 PF08494 DEAD/H associated LR085_15190 PF00270 DEAD/DEAH box helicase LR085_15200 PF01494 FAD binding domain LR085_15205 PF00313 'Cold-shock' DNA-binding domain LR085_15210 PF01048 Phosphorylase superfamily LR085_15215 PF00156 Phosphoribosyl transferase domain LR085_15220 PF00933 Glycosyl hydrolase family 3 N terminal domain LR085_15225 PF04244 Deoxyribodipyrimidine photo-lyase-related protein LR085_15230 PF01266 FAD dependent oxidoreductase LR085_15230 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LR085_15235 PF01323 DSBA-like thioredoxin domain LR085_15240 PF01928 CYTH domain LR085_15250 PF05958 tRNA (Uracil-5-)-methyltransferase LR085_15255 PF00072 Response regulator receiver domain LR085_15255 PF00486 Transcriptional regulatory protein, C terminal LR085_15260 PF02565 Recombination protein O C terminal LR085_15260 PF11967 Recombination protein O N terminal LR085_15265 PF07650 KH domain LR085_15265 PF01926 50S ribosome-binding GTPase LR085_15270 PF14622 Ribonuclease-III-like LR085_15270 PF00035 Double-stranded RNA binding motif LR085_15280 PF10502 Signal peptidase, peptidase S26 LR085_15285 PF06421 GTP-binding protein LepA C-terminus LR085_15285 PF00679 Elongation factor G C-terminus LR085_15285 PF03144 Elongation factor Tu domain 2 LR085_15285 PF00009 Elongation factor Tu GTP binding domain LR085_15290 PF13180 PDZ domain LR085_15300 PF08281 Sigma-70, region 4 LR085_15300 PF04542 Sigma-70 region 2 LR085_15305 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LR085_15305 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LR085_15305 PF00378 Enoyl-CoA hydratase/isomerase LR085_15310 PF01545 Cation efflux family LR085_15315 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LR085_15315 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LR085_15320 PF00378 Enoyl-CoA hydratase/isomerase LR085_15325 PF00378 Enoyl-CoA hydratase/isomerase LR085_15330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LR085_15330 PF02770 Acyl-CoA dehydrogenase, middle domain LR085_15330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LR085_15335 PF00171 Aldehyde dehydrogenase family LR085_15340 PF01381 Helix-turn-helix LR085_15340 PF09856 Predicted transcriptional regulator (DUF2083) LR085_15340 PF06114 IrrE N-terminal-like domain LR085_15350 PF07745 Glycosyl hydrolase family 53 LR085_15355 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 LR085_15355 PF00703 Glycosyl hydrolases family 2 LR085_15355 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LR085_15355 PF02837 Glycosyl hydrolases family 2, sugar binding domain LR085_15355 PF16355 Domain of unknown function (DUF4982) LR085_15385 PF00933 Glycosyl hydrolase family 3 N terminal domain LR085_15385 PF01915 Glycosyl hydrolase family 3 C-terminal domain LR085_15385 PF14310 Fibronectin type III-like domain LR085_15430 PF01464 Transglycosylase SLT domain LR085_15440 PF03958 Bacterial type II/III secretion system short domain LR085_15440 PF00263 Bacterial type II and III secretion system protein LR085_15455 PF02874 ATP synthase alpha/beta family, beta-barrel domain LR085_15455 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LR085_15455 PF18269 T3SS EscN ATPase C-terminal domain LR085_15470 PF01514 Secretory protein of YscJ/FliF family LR085_15490 PF00771 FHIPEP family LR085_15505 PF00813 FliP family LR085_15510 PF01313 Bacterial export proteins, family 3 LR085_15540 PF03211 Pectate lyase LR085_15550 PF05819 NolX protein LR085_15560 PF00440 Bacterial regulatory proteins, tetR family LR085_15565 PF00155 Aminotransferase class I and II LR085_15575 PF00266 Aminotransferase class-V LR085_15585 PF01266 FAD dependent oxidoreductase LR085_15585 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LR085_15665 PF04002 RadC-like JAB domain LR085_15725 PF00092 von Willebrand factor type A domain LR085_15760 PF01624 MutS domain I LR085_15760 PF05192 MutS domain III LR085_15760 PF05190 MutS family domain IV LR085_15760 PF00488 MutS domain V LR085_15760 PF05188 MutS domain II LR085_15770 PF00141 Peroxidase LR085_15775 PF01479 S4 domain LR085_15780 PF01554 MatE LR085_15785 PF01245 Ribosomal protein L19 LR085_15790 PF01746 tRNA (Guanine-1)-methyltransferase LR085_15795 PF05239 PRC-barrel domain LR085_15795 PF01782 RimM N-terminal domain LR085_15800 PF00886 Ribosomal protein S16 LR085_15810 PF03060 Nitronate monooxygenase LR085_15815 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) LR085_15825 PF02978 Signal peptide binding domain LR085_15825 PF02881 SRP54-type protein, helical bundle domain LR085_15825 PF00448 SRP54-type protein, GTPase domain LR085_15830 PF01578 Cytochrome C assembly protein LR085_15835 PF01263 Aldose 1-epimerase LR085_15840 PF06964 Alpha-L-arabinofuranosidase C-terminal domain LR085_15845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_15845 PF03466 LysR substrate binding domain LR085_15865 PF00072 Response regulator receiver domain LR085_15870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_15870 PF13426 PAS domain LR085_15870 PF00072 Response regulator receiver domain LR085_15875 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LR085_15875 PF00072 Response regulator receiver domain LR085_15875 PF01627 Hpt domain LR085_15875 PF00512 His Kinase A (phospho-acceptor) domain LR085_15875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_15875 PF00672 HAMP domain LR085_15880 PF03705 CheR methyltransferase, all-alpha domain LR085_15880 PF01739 CheR methyltransferase, SAM binding domain LR085_15885 PF01339 CheB methylesterase LR085_15890 PF13493 Domain of unknown function (DUF4118) LR085_15890 PF13492 GAF domain LR085_15890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_15890 PF00512 His Kinase A (phospho-acceptor) domain LR085_15890 PF02702 Osmosensitive K+ channel His kinase sensor domain LR085_15895 PF07237 Protein of unknown function (DUF1428) LR085_15900 PF00085 Thioredoxin LR085_15905 PF07715 TonB-dependent Receptor Plug Domain LR085_15905 PF00593 TonB dependent receptor LR085_15910 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain LR085_15910 PF04616 Glycosyl hydrolases family 43 LR085_15915 PF08448 PAS fold LR085_15915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_15915 PF00072 Response regulator receiver domain LR085_15915 PF00512 His Kinase A (phospho-acceptor) domain LR085_15915 PF13188 PAS domain LR085_15920 PF00672 HAMP domain LR085_15920 PF17149 Periplasmic sensor domain found in signal transduction proteins LR085_15920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_15920 PF00512 His Kinase A (phospho-acceptor) domain LR085_15920 PF01627 Hpt domain LR085_15920 PF00072 Response regulator receiver domain LR085_15930 PF13581 Histidine kinase-like ATPase domain LR085_15935 PF01740 STAS domain LR085_15940 PF08678 Rsbr N terminal LR085_15940 PF01740 STAS domain LR085_15945 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LR085_15955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_15955 PF00183 Hsp90 protein LR085_15960 PF12833 Helix-turn-helix domain LR085_15975 PF05656 Protein of unknown function (DUF805) LR085_15980 PF18073 Rubredoxin metal binding domain LR085_15990 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LR085_15995 PF00510 Cytochrome c oxidase subunit III LR085_16000 PF00115 Cytochrome C and Quinol oxidase polypeptide I LR085_16005 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LR085_16005 PF06481 COX Aromatic Rich Motif LR085_16015 PF02401 LytB protein LR085_16020 PF01252 Signal peptidase (SPase) II LR085_16025 PF08264 Anticodon-binding domain of tRNA LR085_16025 PF00133 tRNA synthetases class I (I, L, M and V) LR085_16025 PF06827 Zinc finger found in FPG and IleRS LR085_16030 PF06574 FAD synthetase LR085_16030 PF01687 Riboflavin kinase LR085_16035 PF03023 Lipid II flippase MurJ LR085_16040 PF01649 Ribosomal protein S20 LR085_16045 PF01926 50S ribosome-binding GTPase LR085_16045 PF01018 GTP1/OBG LR085_16050 PF01016 Ribosomal L27 protein LR085_16055 PF00829 Ribosomal prokaryotic L21 protein LR085_16060 PF00005 ABC transporter LR085_16060 PF17755 UvrA DNA-binding domain LR085_16060 PF17760 UvrA interaction domain LR085_16070 PF00378 Enoyl-CoA hydratase/isomerase LR085_16100 PF04377 Arginine-tRNA-protein transferase, C terminus LR085_16100 PF04376 Arginine-tRNA-protein transferase, N terminus LR085_16120 PF02222 ATP-grasp domain LR085_16120 PF01370 NAD dependent epimerase/dehydratase family LR085_16150 PF00730 HhH-GPD superfamily base excision DNA repair protein LR085_16175 PF00196 Bacterial regulatory proteins, luxR family LR085_16175 PF00072 Response regulator receiver domain LR085_16190 PF03775 Septum formation inhibitor MinC, C-terminal domain LR085_16190 PF05209 Septum formation inhibitor MinC, N-terminal domain LR085_16195 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LR085_16200 PF03776 Septum formation topological specificity factor MinE LR085_16210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_16210 PF00512 His Kinase A (phospho-acceptor) domain LR085_16215 PF00486 Transcriptional regulatory protein, C terminal LR085_16215 PF00072 Response regulator receiver domain LR085_16230 PF00884 Sulfatase LR085_16230 PF08019 Phosphoethanolamine transferase EptA/EptB LR085_16250 PF07690 Major Facilitator Superfamily LR085_16255 PF02347 Glycine cleavage system P-protein LR085_16270 PF00248 Aldo/keto reductase family LR085_16275 PF06628 Catalase-related immune-responsive LR085_16275 PF00199 Catalase LR085_16275 PF18011 C-terminal domain found in long catalases LR085_16290 PF02311 AraC-like ligand binding domain LR085_16290 PF12833 Helix-turn-helix domain LR085_16310 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LR085_16310 PF07676 WD40-like Beta Propeller Repeat LR085_16310 PF00326 Prolyl oligopeptidase family LR085_16320 PF03169 OPT oligopeptide transporter protein LR085_16330 PF02811 PHP domain LR085_16330 PF14579 Helix-hairpin-helix motif LR085_16330 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LR085_16330 PF07733 Bacterial DNA polymerase III alpha NTPase domain LR085_16345 PF01726 LexA DNA binding domain LR085_16345 PF00717 Peptidase S24-like LR085_16375 PF10518 TAT (twin-arginine translocation) pathway signal sequence LR085_16375 PF01799 [2Fe-2S] binding domain LR085_16375 PF00111 2Fe-2S iron-sulfur cluster binding domain LR085_16380 PF03450 CO dehydrogenase flavoprotein C-terminal domain LR085_16380 PF00941 FAD binding domain in molybdopterin dehydrogenase LR085_16385 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LR085_16385 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LR085_16390 PF01915 Glycosyl hydrolase family 3 C-terminal domain LR085_16390 PF00933 Glycosyl hydrolase family 3 N terminal domain LR085_16390 PF14310 Fibronectin type III-like domain LR085_16400 PF17755 UvrA DNA-binding domain LR085_16420 PF07992 Pyridine nucleotide-disulphide oxidoreductase LR085_16430 PF00106 short chain dehydrogenase LR085_16435 PF17678 Glycosyl hydrolase family 92 N-terminal domain LR085_16435 PF07971 Glycosyl hydrolase family 92 LR085_16450 PF00723 Glycosyl hydrolases family 15 LR085_16465 PF01256 Carbohydrate kinase LR085_16470 PF00300 Histidine phosphatase superfamily (branch 1) LR085_16470 PF13456 Reverse transcriptase-like LR085_16500 PF18766 SWI2/SNF2 ATPase LR085_16500 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LR085_16500 PF12008 Type I restriction and modification enzyme - subunit R C terminal LR085_16505 PF01420 Type I restriction modification DNA specificity domain LR085_16570 PF11838 ERAP1-like C-terminal domain LR085_16570 PF01433 Peptidase family M1 domain LR085_16575 PF00709 Adenylosuccinate synthetase LR085_16585 PF01145 SPFH domain / Band 7 family LR085_16590 PF12221 Bacterial membrane protein N terminal LR085_16590 PF01145 SPFH domain / Band 7 family LR085_16595 PF00072 Response regulator receiver domain LR085_16600 PF01556 DnaJ C terminal domain LR085_16600 PF00226 DnaJ domain LR085_16605 PF00011 Hsp20/alpha crystallin family LR085_16610 PF08534 Redoxin LR085_16620 PF00905 Penicillin binding protein transpeptidase domain LR085_16620 PF00912 Transglycosylase LR085_16620 PF06832 Penicillin-Binding Protein C-terminus Family LR085_16645 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LR085_16645 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain LR085_16645 PF07703 Alpha-2-macroglobulin bait region domain LR085_16645 PF00207 Alpha-2-macroglobulin family LR085_16645 PF17962 Bacterial macroglobulin domain 6 LR085_16645 PF01835 MG2 domain LR085_16645 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LR085_16645 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LR085_16655 PF00593 TonB dependent receptor LR085_16655 PF07715 TonB-dependent Receptor Plug Domain LR085_16660 PF04303 PrpF protein LR085_16675 PF00694 Aconitase C-terminal domain LR085_16675 PF00330 Aconitase family (aconitate hydratase) LR085_16680 PF00285 Citrate synthase, C-terminal domain LR085_16690 PF00158 Sigma-54 interaction domain LR085_16690 PF06506 Propionate catabolism activator LR085_16690 PF02954 Bacterial regulatory protein, Fis family LR085_16795 PF09115 DNA polymerase III, delta subunit, C terminal LR085_16800 PF02618 YceG-like family LR085_16805 PF04715 Anthranilate synthase component I, N terminal region LR085_16805 PF00425 chorismate binding enzyme LR085_16810 PF00109 Beta-ketoacyl synthase, N-terminal domain LR085_16810 PF02801 Beta-ketoacyl synthase, C-terminal domain LR085_16815 PF00550 Phosphopantetheine attachment site LR085_16825 PF00698 Acyl transferase domain LR085_16830 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LR085_16830 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LR085_16835 PF01783 Ribosomal L32p protein family LR085_16840 PF02620 Large ribosomal RNA subunit accumulation protein YceD LR085_16845 PF02545 Maf-like protein LR085_16870 PF07726 ATPase family associated with various cellular activities (AAA) LR085_16870 PF17863 AAA lid domain LR085_16880 PF13559 Domain of unknown function (DUF4129) LR085_16880 PF01841 Transglutaminase-like superfamily LR085_16880 PF11992 Domain of unknown function (DUF3488) LR085_16890 PF01230 HIT domain LR085_16895 PF02132 RecR protein LR085_16895 PF13662 Toprim domain LR085_16900 PF02575 YbaB/EbfC DNA-binding family LR085_16905 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LR085_16905 PF12169 DNA polymerase III subunits gamma and tau domain III LR085_16905 PF12170 DNA polymerase III tau subunit V interacting with alpha LR085_16920 PF02391 MoaE protein LR085_16925 PF02597 ThiS family LR085_16930 PF01967 MoaC family LR085_16940 PF04055 Radical SAM superfamily LR085_16940 PF06463 Molybdenum Cofactor Synthesis C LR085_16945 PF00753 Metallo-beta-lactamase superfamily LR085_16945 PF12706 Beta-lactamase superfamily domain LR085_16955 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LR085_16975 PF00929 Exonuclease LR085_16980 PF00075 RNase H LR085_16990 PF00753 Metallo-beta-lactamase superfamily LR085_16990 PF16123 Hydroxyacylglutathione hydrolase C-terminus LR085_16995 PF01476 LysM domain LR085_16995 PF05257 CHAP domain LR085_17020 PF00216 Bacterial DNA-binding protein LR085_17025 PF00004 ATPase family associated with various cellular activities (AAA) LR085_17025 PF05362 Lon protease (S16) C-terminal proteolytic domain LR085_17025 PF02190 ATP-dependent protease La (LON) substrate-binding domain LR085_17030 PF06689 ClpX C4-type zinc finger LR085_17030 PF07724 AAA domain (Cdc48 subfamily) LR085_17030 PF10431 C-terminal, D2-small domain, of ClpB protein LR085_17035 PF00574 Clp protease LR085_17040 PF05698 Bacterial trigger factor protein (TF) C-terminus LR085_17040 PF05697 Bacterial trigger factor protein (TF) LR085_17075 PF00180 Isocitrate/isopropylmalate dehydrogenase LR085_17075 PF18324 Hypothetical protein TT1725 LR085_17085 PF00462 Glutaredoxin LR085_17090 PF01435 Peptidase family M48 LR085_17090 PF13181 Tetratricopeptide repeat LR085_17095 PF00072 Response regulator receiver domain LR085_17095 PF00486 Transcriptional regulatory protein, C terminal LR085_17100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_17100 PF00989 PAS fold LR085_17100 PF00512 His Kinase A (phospho-acceptor) domain LR085_17100 PF11808 Phosphate regulon sensor protein PhoR LR085_17105 PF02503 Polyphosphate kinase middle domain LR085_17105 PF13090 Polyphosphate kinase C-terminal domain 2 LR085_17105 PF17941 Polyphosphate kinase C-terminal domain 1 LR085_17105 PF13089 Polyphosphate kinase N-terminal domain LR085_17110 PF02541 Ppx/GppA phosphatase family LR085_17115 PF13439 Glycosyltransferase Family 4 LR085_17115 PF00534 Glycosyl transferases group 1 LR085_17120 PF01569 PAP2 superfamily LR085_17125 PF00149 Calcineurin-like phosphoesterase LR085_17140 PF04305 Protein of unknown function (DUF455) LR085_17145 PF00156 Phosphoribosyl transferase domain LR085_17160 PF08245 Mur ligase middle domain LR085_17160 PF02875 Mur ligase family, glutamate ligase domain LR085_17175 PF00300 Histidine phosphatase superfamily (branch 1) LR085_17180 PF04185 Phosphoesterase family LR085_17180 PF05506 Domain of unknown function (DUF756) LR085_17190 PF08240 Alcohol dehydrogenase GroES-like domain LR085_17190 PF00107 Zinc-binding dehydrogenase LR085_17200 PF12857 TOBE-like domain LR085_17200 PF00005 ABC transporter LR085_17205 PF00528 Binding-protein-dependent transport system inner membrane component LR085_17210 PF00528 Binding-protein-dependent transport system inner membrane component LR085_17220 PF00155 Aminotransferase class I and II LR085_17230 PF00849 RNA pseudouridylate synthase LR085_17240 PF00691 OmpA family LR085_17240 PF05736 OprF membrane domain LR085_17245 PF08240 Alcohol dehydrogenase GroES-like domain LR085_17245 PF00107 Zinc-binding dehydrogenase LR085_17250 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LR085_17250 PF07992 Pyridine nucleotide-disulphide oxidoreductase LR085_17275 PF02798 Glutathione S-transferase, N-terminal domain LR085_17275 PF00043 Glutathione S-transferase, C-terminal domain LR085_17280 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LR085_17280 PF00056 lactate/malate dehydrogenase, NAD binding domain LR085_17285 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LR085_17290 PF00009 Elongation factor Tu GTP binding domain LR085_17290 PF00679 Elongation factor G C-terminus LR085_17290 PF03144 Elongation factor Tu domain 2 LR085_17300 PF01425 Amidase LR085_17315 PF01474 Class-II DAHP synthetase family LR085_17320 PF02600 Disulfide bond formation protein DsbB LR085_17325 PF01196 Ribosomal protein L17 LR085_17330 PF01000 RNA polymerase Rpb3/RpoA insert domain LR085_17330 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LR085_17330 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LR085_17335 PF00163 Ribosomal protein S4/S9 N-terminal domain LR085_17335 PF01479 S4 domain LR085_17340 PF00411 Ribosomal protein S11 LR085_17345 PF00416 Ribosomal protein S13/S18 LR085_17350 PF00344 SecY translocase LR085_17355 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LR085_17360 PF00327 Ribosomal protein L30p/L7e LR085_17365 PF00333 Ribosomal protein S5, N-terminal domain LR085_17365 PF03719 Ribosomal protein S5, C-terminal domain LR085_17370 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LR085_17375 PF00347 Ribosomal protein L6 LR085_17380 PF00410 Ribosomal protein S8 LR085_17385 PF00253 Ribosomal protein S14p/S29e LR085_17390 PF00281 Ribosomal protein L5 LR085_17390 PF00673 ribosomal L5P family C-terminus LR085_17395 PF00467 KOW motif LR085_17395 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LR085_17400 PF00238 Ribosomal protein L14p/L23e LR085_17405 PF00366 Ribosomal protein S17 LR085_17410 PF00831 Ribosomal L29 protein LR085_17415 PF00252 Ribosomal protein L16p/L10e LR085_17420 PF07650 KH domain LR085_17420 PF00189 Ribosomal protein S3, C-terminal domain LR085_17425 PF00237 Ribosomal protein L22p/L17e LR085_17430 PF00203 Ribosomal protein S19 LR085_17435 PF03947 Ribosomal Proteins L2, C-terminal domain LR085_17435 PF00181 Ribosomal Proteins L2, RNA binding domain LR085_17440 PF00276 Ribosomal protein L23 LR085_17445 PF00573 Ribosomal protein L4/L1 family LR085_17450 PF00297 Ribosomal protein L3 LR085_17455 PF00338 Ribosomal protein S10p/S20e LR085_17460 PF00009 Elongation factor Tu GTP binding domain LR085_17460 PF03144 Elongation factor Tu domain 2 LR085_17460 PF03143 Elongation factor Tu C-terminal domain LR085_17465 PF00679 Elongation factor G C-terminus LR085_17465 PF14492 Elongation Factor G, domain II LR085_17465 PF03764 Elongation factor G, domain IV LR085_17465 PF00009 Elongation factor Tu GTP binding domain LR085_17465 PF03144 Elongation factor Tu domain 2 LR085_17470 PF00177 Ribosomal protein S7p/S5e LR085_17475 PF00164 Ribosomal protein S12/S23 LR085_17480 PF04997 RNA polymerase Rpb1, domain 1 LR085_17480 PF00623 RNA polymerase Rpb1, domain 2 LR085_17480 PF04983 RNA polymerase Rpb1, domain 3 LR085_17480 PF05000 RNA polymerase Rpb1, domain 4 LR085_17480 PF04998 RNA polymerase Rpb1, domain 5 LR085_17485 PF04560 RNA polymerase Rpb2, domain 7 LR085_17485 PF00562 RNA polymerase Rpb2, domain 6 LR085_17485 PF10385 RNA polymerase beta subunit external 1 domain LR085_17485 PF04565 RNA polymerase Rpb2, domain 3 LR085_17485 PF04563 RNA polymerase beta subunit LR085_17485 PF04561 RNA polymerase Rpb2, domain 2 LR085_17490 PF16320 Ribosomal protein L7/L12 dimerisation domain LR085_17490 PF00542 Ribosomal protein L7/L12 C-terminal domain LR085_17495 PF00466 Ribosomal protein L10 LR085_17500 PF00687 Ribosomal protein L1p/L10e family LR085_17505 PF03946 Ribosomal protein L11, N-terminal domain LR085_17505 PF00298 Ribosomal protein L11, RNA binding domain LR085_17510 PF02357 Transcription termination factor nusG LR085_17510 PF00467 KOW motif LR085_17515 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LR085_17525 PF00009 Elongation factor Tu GTP binding domain LR085_17525 PF03143 Elongation factor Tu C-terminal domain LR085_17525 PF03144 Elongation factor Tu domain 2 LR085_17545 PF06071 Protein of unknown function (DUF933) LR085_17545 PF01926 50S ribosome-binding GTPase LR085_17550 PF01195 Peptidyl-tRNA hydrolase LR085_17555 PF01386 Ribosomal L25p family LR085_17555 PF14693 Ribosomal protein TL5, C-terminal domain LR085_17560 PF14572 Phosphoribosyl synthetase-associated domain LR085_17560 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LR085_17570 PF00288 GHMP kinases N terminal domain LR085_17570 PF08544 GHMP kinases C terminal LR085_17575 PF03550 Outer membrane lipoprotein LolB LR085_17585 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LR085_17585 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LR085_17585 PF01488 Shikimate / quinate 5-dehydrogenase LR085_17590 PF03462 PCRF domain LR085_17590 PF00472 RF-1 domain LR085_17600 PF00994 Probable molybdopterin binding domain LR085_17605 PF03976 Polyphosphate kinase 2 (PPK2) LR085_17615 PF00708 Acylphosphatase LR085_17620 PF08534 Redoxin LR085_17625 PF03631 Virulence factor BrkB LR085_17630 PF03358 NADPH-dependent FMN reductase LR085_17640 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain LR085_17640 PF17189 Glycosyl hydrolase family 30 beta sandwich domain LR085_17650 PF04073 Aminoacyl-tRNA editing domain LR085_17655 PF04151 Bacterial pre-peptidase C-terminal domain LR085_17655 PF00082 Subtilase family LR085_17665 PF00082 Subtilase family LR085_17665 PF04151 Bacterial pre-peptidase C-terminal domain LR085_17670 PF01063 Amino-transferase class IV LR085_17735 PF00881 Nitroreductase family LR085_17740 PF01367 5'-3' exonuclease, C-terminal SAM fold LR085_17740 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LR085_17740 PF00476 DNA polymerase family A LR085_17740 PF01612 3'-5' exonuclease LR085_17745 PF00293 NUDIX domain LR085_17755 PF00561 alpha/beta hydrolase fold LR085_17760 PF05175 Methyltransferase small domain LR085_17760 PF17827 PrmC N-terminal domain LR085_17765 PF10417 C-terminal domain of 1-Cys peroxiredoxin LR085_17765 PF00578 AhpC/TSA family LR085_17770 PF13192 Thioredoxin domain LR085_17770 PF07992 Pyridine nucleotide-disulphide oxidoreductase LR085_17775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_17775 PF03466 LysR substrate binding domain LR085_17780 PF01272 Transcription elongation factor, GreA/GreB, C-term LR085_17780 PF14760 Rnk N-terminus LR085_17785 PF00923 Transaldolase/Fructose-6-phosphate aldolase LR085_17795 PF01625 Peptide methionine sulfoxide reductase LR085_17805 PF00196 Bacterial regulatory proteins, luxR family LR085_17805 PF00072 Response regulator receiver domain LR085_17810 PF00672 HAMP domain LR085_17810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_17810 PF00512 His Kinase A (phospho-acceptor) domain LR085_17810 PF01627 Hpt domain LR085_17810 PF00072 Response regulator receiver domain LR085_17810 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LR085_17815 PF00072 Response regulator receiver domain LR085_17815 PF00990 Diguanylate cyclase, GGDEF domain LR085_17830 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LR085_17830 PF00749 tRNA synthetases class I (E and Q), catalytic domain LR085_17835 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LR085_17835 PF12833 Helix-turn-helix domain LR085_17840 PF00892 EamA-like transporter family LR085_17860 PF18125 RlmM ferredoxin-like domain LR085_17860 PF01728 FtsJ-like methyltransferase LR085_17865 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LR085_17865 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LR085_17870 PF08450 SMP-30/Gluconolactonase/LRE-like region LR085_17890 PF00378 Enoyl-CoA hydratase/isomerase LR085_17900 PF13193 AMP-binding enzyme C-terminal domain LR085_17900 PF00501 AMP-binding enzyme LR085_17905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_17905 PF03466 LysR substrate binding domain LR085_17910 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LR085_17910 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit LR085_17915 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LR085_17920 PF07729 FCD domain LR085_17920 PF00392 Bacterial regulatory proteins, gntR family LR085_17940 PF01494 FAD binding domain LR085_17945 PF01494 FAD binding domain LR085_17955 PF01923 Cobalamin adenosyltransferase LR085_17960 PF00850 Histone deacetylase domain LR085_17965 PF03968 OstA-like protein LR085_17965 PF04453 LPS transport system D LR085_17970 PF00639 PPIC-type PPIASE domain LR085_17970 PF09312 SurA N-terminal domain LR085_17975 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LR085_17985 PF00398 Ribosomal RNA adenine dimethylase LR085_17990 PF04379 ApaG domain LR085_17995 PF00149 Calcineurin-like phosphoesterase LR085_18000 PF00186 Dihydrofolate reductase LR085_18005 PF00303 Thymidylate synthase LR085_18010 PF01790 Prolipoprotein diacylglyceryl transferase LR085_18030 PF01219 Prokaryotic diacylglycerol kinase LR085_18040 PF08521 Two-component sensor kinase N-terminal LR085_18040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_18040 PF00512 His Kinase A (phospho-acceptor) domain LR085_18045 PF00072 Response regulator receiver domain LR085_18045 PF00486 Transcriptional regulatory protein, C terminal LR085_18050 PF13472 GDSL-like Lipase/Acylhydrolase family LR085_18055 PF00005 ABC transporter LR085_18065 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LR085_18080 PF00528 Binding-protein-dependent transport system inner membrane component LR085_18100 PF07715 TonB-dependent Receptor Plug Domain LR085_18100 PF00593 TonB dependent receptor LR085_18110 PF00248 Aldo/keto reductase family LR085_18115 PF07662 Na+ dependent nucleoside transporter C-terminus LR085_18115 PF07670 Nucleoside recognition LR085_18115 PF01773 Na+ dependent nucleoside transporter N-terminus LR085_18120 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LR085_18120 PF00294 pfkB family carbohydrate kinase LR085_18125 PF01207 Dihydrouridine synthase (Dus) LR085_18135 PF02773 S-adenosylmethionine synthetase, C-terminal domain LR085_18135 PF02772 S-adenosylmethionine synthetase, central domain LR085_18135 PF00438 S-adenosylmethionine synthetase, N-terminal domain LR085_18145 PF00328 Histidine phosphatase superfamily (branch 2) LR085_18160 PF00691 OmpA family LR085_18160 PF01389 OmpA-like transmembrane domain LR085_18180 PF00311 Phosphoenolpyruvate carboxylase LR085_18190 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LR085_18190 PF05221 S-adenosyl-L-homocysteine hydrolase LR085_18225 PF00128 Alpha amylase, catalytic domain LR085_18245 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LR085_18260 PF00550 Phosphopantetheine attachment site LR085_18260 PF14765 Polyketide synthase dehydratase LR085_18260 PF08659 KR domain LR085_18260 PF00109 Beta-ketoacyl synthase, N-terminal domain LR085_18260 PF16197 Ketoacyl-synthetase C-terminal extension LR085_18260 PF00107 Zinc-binding dehydrogenase LR085_18260 PF08240 Alcohol dehydrogenase GroES-like domain LR085_18260 PF02801 Beta-ketoacyl synthase, C-terminal domain LR085_18260 PF00698 Acyl transferase domain LR085_18275 PF02219 Methylenetetrahydrofolate reductase LR085_18290 PF00293 NUDIX domain LR085_18300 PF07516 SecA Wing and Scaffold domain LR085_18300 PF07517 SecA DEAD-like domain LR085_18300 PF02810 SEC-C motif LR085_18300 PF01043 SecA preprotein cross-linking domain LR085_18305 PF01476 LysM domain LR085_18305 PF08525 Opacity-associated protein A N-terminal motif LR085_18305 PF01551 Peptidase family M23 LR085_18315 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LR085_18320 PF12327 FtsZ family, C-terminal domain LR085_18320 PF00091 Tubulin/FtsZ family, GTPase domain LR085_18325 PF02491 SHS2 domain inserted in FTSA LR085_18330 PF03799 Cell division protein FtsQ LR085_18330 PF08478 POTRA domain, FtsQ-type LR085_18335 PF07478 D-ala D-ala ligase C-terminus LR085_18335 PF01820 D-ala D-ala ligase N-terminus LR085_18340 PF01225 Mur ligase family, catalytic domain LR085_18340 PF02875 Mur ligase family, glutamate ligase domain LR085_18340 PF08245 Mur ligase middle domain LR085_18345 PF04101 Glycosyltransferase family 28 C-terminal domain LR085_18345 PF03033 Glycosyltransferase family 28 N-terminal domain LR085_18350 PF01098 Cell cycle protein LR085_18355 PF00953 Glycosyl transferase family 4 LR085_18360 PF01225 Mur ligase family, catalytic domain LR085_18360 PF02875 Mur ligase family, glutamate ligase domain LR085_18360 PF08245 Mur ligase middle domain LR085_18365 PF01225 Mur ligase family, catalytic domain LR085_18365 PF02875 Mur ligase family, glutamate ligase domain LR085_18365 PF08245 Mur ligase middle domain LR085_18370 PF03717 Penicillin-binding Protein dimerisation domain LR085_18370 PF00905 Penicillin binding protein transpeptidase domain LR085_18375 PF04999 Cell division protein FtsL LR085_18380 PF01795 MraW methylase family LR085_18385 PF02381 MraZ protein, putative antitoxin-like LR085_18410 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LR085_18420 PF02021 Uncharacterised protein family UPF0102 LR085_18425 PF04307 LexA-binding, inner membrane-associated putative hydrolase LR085_18430 PF01565 FAD binding domain LR085_18430 PF02913 FAD linked oxidases, C-terminal domain LR085_18440 PF00486 Transcriptional regulatory protein, C terminal LR085_18440 PF00072 Response regulator receiver domain LR085_18445 PF13493 Domain of unknown function (DUF4118) LR085_18445 PF02702 Osmosensitive K+ channel His kinase sensor domain LR085_18445 PF00512 His Kinase A (phospho-acceptor) domain LR085_18445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_18445 PF13492 GAF domain LR085_18450 PF02669 K+-transporting ATPase, c chain LR085_18460 PF03814 Potassium-transporting ATPase A subunit LR085_18475 PF00586 AIR synthase related protein, N-terminal domain LR085_18475 PF02769 AIR synthase related protein, C-terminal domain LR085_18480 PF01029 NusB family LR085_18485 PF00885 6,7-dimethyl-8-ribityllumazine synthase LR085_18490 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LR085_18490 PF00925 GTP cyclohydrolase II LR085_18495 PF00677 Lumazine binding domain LR085_18505 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LR085_18505 PF01872 RibD C-terminal domain LR085_18515 PF03477 ATP cone domain LR085_18520 PF00464 Serine hydroxymethyltransferase LR085_18530 PF00005 ABC transporter LR085_18530 PF12848 ABC transporter LR085_18535 PF01327 Polypeptide deformylase LR085_18540 PF03960 ArsC family LR085_18560 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LR085_18560 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LR085_18595 PF00593 TonB dependent receptor LR085_18595 PF07715 TonB-dependent Receptor Plug Domain LR085_18605 PF00392 Bacterial regulatory proteins, gntR family LR085_18605 PF07702 UTRA domain LR085_18620 PF00263 Bacterial type II and III secretion system protein LR085_18620 PF03958 Bacterial type II/III secretion system short domain LR085_18630 PF10741 Type II secretion system (T2SS), protein M subtype b LR085_18635 PF05137 Fimbrial assembly protein (PilN) LR085_18640 PF03934 Type II secretion system (T2SS), protein K LR085_18650 PF07963 Prokaryotic N-terminal methylation motif LR085_18655 PF12019 Type II transport protein GspH LR085_18660 PF08334 Type II secretion system (T2SS), protein G LR085_18665 PF00482 Type II secretion system (T2SS), protein F LR085_18670 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LR085_18670 PF00437 Type II/IV secretion system protein LR085_18675 PF04151 Bacterial pre-peptidase C-terminal domain LR085_18675 PF00082 Subtilase family LR085_18680 PF05662 Coiled stalk of trimeric autotransporter adhesin LR085_18680 PF05658 Head domain of trimeric autotransporter adhesin LR085_18680 PF03895 YadA-like membrane anchor domain LR085_18680 PF13018 Extended Signal Peptide of Type V secretion system LR085_18690 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LR085_18690 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LR085_18690 PF02769 AIR synthase related protein, C-terminal domain LR085_18695 PF13098 Thioredoxin-like domain LR085_18695 PF10411 Disulfide bond isomerase protein N-terminus LR085_18700 PF02899 Phage integrase, N-terminal SAM-like domain LR085_18700 PF00589 Phage integrase family LR085_18715 PF03739 Lipopolysaccharide export system permease LptF/LptG LR085_18725 PF02789 Cytosol aminopeptidase family, N-terminal domain LR085_18725 PF00883 Cytosol aminopeptidase family, catalytic domain LR085_18745 PF08264 Anticodon-binding domain of tRNA LR085_18745 PF10458 Valyl tRNA synthetase tRNA binding arm LR085_18745 PF00133 tRNA synthetases class I (I, L, M and V) LR085_18755 PF00544 Pectate lyase LR085_18760 PF00544 Pectate lyase LR085_18775 PF01066 CDP-alcohol phosphatidyltransferase LR085_18785 PF03129 Anticodon binding domain LR085_18785 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LR085_18785 PF04073 Aminoacyl-tRNA editing domain LR085_18790 PF00816 H-NS histone family LR085_18800 PF02405 Permease MlaE LR085_18805 PF00005 ABC transporter LR085_18810 PF03886 ABC-type transport auxiliary lipoprotein component LR085_18810 PF02470 MlaD protein LR085_18835 PF14307 Glycosyltransferase WbsX LR085_18835 PF05045 Rhamnan synthesis protein F LR085_18840 PF01144 Coenzyme A transferase LR085_18845 PF01144 Coenzyme A transferase LR085_18850 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LR085_18850 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LR085_18850 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LR085_18850 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LR085_18855 PF01050 Mannose-6-phosphate isomerase LR085_18855 PF00483 Nucleotidyl transferase LR085_18860 PF04321 RmlD substrate binding domain LR085_18865 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LR085_18870 PF00483 Nucleotidyl transferase LR085_18875 PF16363 GDP-mannose 4,6 dehydratase LR085_18880 PF01012 Electron transfer flavoprotein domain LR085_18885 PF01012 Electron transfer flavoprotein domain LR085_18885 PF00766 Electron transfer flavoprotein FAD-binding domain LR085_18890 PF00483 Nucleotidyl transferase LR085_18890 PF01050 Mannose-6-phosphate isomerase LR085_18895 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LR085_18905 PF00535 Glycosyl transferase family 2 LR085_18925 PF01370 NAD dependent epimerase/dehydratase family LR085_18930 PF16363 GDP-mannose 4,6 dehydratase LR085_18945 PF13439 Glycosyltransferase Family 4 LR085_18945 PF00534 Glycosyl transferases group 1 LR085_18950 PF13847 Methyltransferase domain LR085_18950 PF00069 Protein kinase domain LR085_18955 PF00005 ABC transporter LR085_18970 PF01053 Cys/Met metabolism PLP-dependent enzyme LR085_18975 PF00291 Pyridoxal-phosphate dependent enzyme LR085_18975 PF00571 CBS domain LR085_18995 PF00437 Type II/IV secretion system protein LR085_19000 PF14497 Glutathione S-transferase, C-terminal domain LR085_19000 PF02798 Glutathione S-transferase, N-terminal domain LR085_19010 PF00271 Helicase conserved C-terminal domain LR085_19010 PF00270 DEAD/DEAH box helicase LR085_19015 PF01242 6-pyruvoyl tetrahydropterin synthase LR085_19030 PF13185 GAF domain LR085_19040 PF13419 Haloacid dehalogenase-like hydrolase LR085_19045 PF00817 impB/mucB/samB family LR085_19045 PF11799 impB/mucB/samB family C-terminal domain LR085_19045 PF11798 IMS family HHH motif LR085_19050 PF07977 FabA-like domain LR085_19055 PF00109 Beta-ketoacyl synthase, N-terminal domain LR085_19055 PF02801 Beta-ketoacyl synthase, C-terminal domain LR085_19060 PF01432 Peptidase family M3 LR085_19065 PF00291 Pyridoxal-phosphate dependent enzyme LR085_19075 PF07732 Multicopper oxidase LR085_19075 PF07731 Multicopper oxidase LR085_19075 PF00394 Multicopper oxidase LR085_19080 PF05275 Copper resistance protein B precursor (CopB) LR085_19085 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LR085_19115 PF01380 SIS domain LR085_19120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LR085_19125 PF00005 ABC transporter LR085_19130 PF00005 ABC transporter LR085_19130 PF12704 MacB-like periplasmic core domain LR085_19130 PF02687 FtsX-like permease family LR085_19135 PF12704 MacB-like periplasmic core domain LR085_19135 PF00005 ABC transporter LR085_19135 PF02687 FtsX-like permease family LR085_19150 PF00512 His Kinase A (phospho-acceptor) domain LR085_19150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_19150 PF00672 HAMP domain LR085_19175 PF00132 Bacterial transferase hexapeptide (six repeats) LR085_19175 PF14602 Hexapeptide repeat of succinyl-transferase LR085_19175 PF12804 MobA-like NTP transferase domain LR085_19190 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LR085_19190 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LR085_19195 PF02874 ATP synthase alpha/beta family, beta-barrel domain LR085_19195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LR085_19200 PF00231 ATP synthase LR085_19205 PF02874 ATP synthase alpha/beta family, beta-barrel domain LR085_19205 PF00306 ATP synthase alpha/beta chain, C terminal domain LR085_19205 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LR085_19210 PF00213 ATP synthase delta (OSCP) subunit LR085_19215 PF00430 ATP synthase B/B' CF(0) LR085_19220 PF00137 ATP synthase subunit C LR085_19225 PF00119 ATP synthase A chain LR085_19240 PF01979 Amidohydrolase family LR085_19245 PF07992 Pyridine nucleotide-disulphide oxidoreductase LR085_19245 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LR085_19255 PF00364 Biotin-requiring enzyme LR085_19255 PF02817 e3 binding domain LR085_19255 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LR085_19290 PF03180 NLPA lipoprotein LR085_19295 PF00528 Binding-protein-dependent transport system inner membrane component LR085_19300 PF00005 ABC transporter LR085_19300 PF09383 NIL domain LR085_19305 PF00892 EamA-like transporter family LR085_19310 PF04461 Protein of unknown function (DUF520) LR085_19335 PF13419 Haloacid dehalogenase-like hydrolase LR085_19340 PF01479 S4 domain LR085_19340 PF00849 RNA pseudouridylate synthase LR085_19345 PF05175 Methyltransferase small domain LR085_19345 PF08468 Methyltransferase small domain N-terminal LR085_19355 PF07995 Glucose / Sorbosone dehydrogenase LR085_19365 PF18698 Histidine kinase sensor domain LR085_19365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_19365 PF00672 HAMP domain LR085_19365 PF00989 PAS fold LR085_19365 PF00512 His Kinase A (phospho-acceptor) domain LR085_19385 PF01168 Alanine racemase, N-terminal domain LR085_19385 PF00842 Alanine racemase, C-terminal domain LR085_19390 PF01266 FAD dependent oxidoreductase LR085_19395 PF01037 Lrp/AsnC ligand binding domain LR085_19405 PF01641 SelR domain LR085_19415 PF01618 MotA/TolQ/ExbB proton channel family LR085_19420 PF00691 OmpA family LR085_19420 PF13677 Membrane MotB of proton-channel complex MotA/MotB LR085_19445 PF01061 ABC-2 type transporter LR085_19450 PF00005 ABC transporter LR085_19455 PF00999 Sodium/hydrogen exchanger family LR085_19460 PF03795 YCII-related domain LR085_19465 PF02469 Fasciclin domain LR085_19470 PF03167 Uracil DNA glycosylase superfamily LR085_19480 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LR085_19485 PF03466 LysR substrate binding domain LR085_19485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_19490 PF03358 NADPH-dependent FMN reductase LR085_19495 PF00248 Aldo/keto reductase family LR085_19505 PF01431 Peptidase family M13 LR085_19505 PF05649 Peptidase family M13 LR085_19520 PF13520 Amino acid permease LR085_19530 PF00072 Response regulator receiver domain LR085_19530 PF04397 LytTr DNA-binding domain LR085_19535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_19535 PF00672 HAMP domain LR085_19535 PF02743 Cache domain LR085_19535 PF06580 Histidine kinase LR085_19555 PF00857 Isochorismatase family LR085_19560 PF05974 Domain of unknown function (DUF892) LR085_19565 PF05974 Domain of unknown function (DUF892) LR085_19570 PF05067 Manganese containing catalase LR085_19585 PF03705 CheR methyltransferase, all-alpha domain LR085_19585 PF08448 PAS fold LR085_19585 PF01339 CheB methylesterase LR085_19585 PF01739 CheR methyltransferase, SAM binding domain LR085_19600 PF02954 Bacterial regulatory protein, Fis family LR085_19600 PF00072 Response regulator receiver domain LR085_19600 PF00158 Sigma-54 interaction domain LR085_19610 PF01654 Cytochrome bd terminal oxidase subunit I LR085_19615 PF02322 Cytochrome bd terminal oxidase subunit II LR085_19635 PF16363 GDP-mannose 4,6 dehydratase LR085_19645 PF03275 UDP-galactopyranose mutase LR085_19655 PF00005 ABC transporter LR085_19655 PF00664 ABC transporter transmembrane region LR085_19670 PF13823 Alcohol dehydrogenase GroES-associated LR085_19670 PF08240 Alcohol dehydrogenase GroES-like domain LR085_19670 PF00107 Zinc-binding dehydrogenase LR085_19740 PF00593 TonB dependent receptor LR085_19740 PF07715 TonB-dependent Receptor Plug Domain LR085_19755 PF00005 ABC transporter LR085_19765 PF03466 LysR substrate binding domain LR085_19765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_19770 PF01042 Endoribonuclease L-PSP LR085_19790 PF00248 Aldo/keto reductase family LR085_19795 PF03466 LysR substrate binding domain LR085_19795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_19815 PF00563 EAL domain LR085_19815 PF01590 GAF domain LR085_19815 PF00360 Phytochrome region LR085_19815 PF00990 Diguanylate cyclase, GGDEF domain LR085_19845 PF00140 Sigma-70 factor, region 1.2 LR085_19845 PF03979 Sigma-70 factor, region 1.1 LR085_19845 PF04546 Sigma-70, non-essential region LR085_19845 PF04545 Sigma-70, region 4 LR085_19845 PF04542 Sigma-70 region 2 LR085_19845 PF04539 Sigma-70 region 3 LR085_19850 PF02580 D-Tyr-tRNA(Tyr) deacylase LR085_19855 PF03279 Bacterial lipid A biosynthesis acyltransferase LR085_19865 PF00925 GTP cyclohydrolase II LR085_19885 PF00535 Glycosyl transferase family 2 LR085_19900 PF01029 NusB family LR085_19900 PF01189 16S rRNA methyltransferase RsmB/F LR085_19905 PF02911 Formyl transferase, C-terminal domain LR085_19905 PF00551 Formyl transferase LR085_19910 PF01327 Polypeptide deformylase LR085_19915 PF01476 LysM domain LR085_19920 PF17782 DprA winged helix domain LR085_19920 PF02481 DNA recombination-mediator protein A LR085_19925 PF04361 Protein of unknown function (DUF494) LR085_19930 PF00114 Pilin (bacterial filament) LR085_19930 PF07963 Prokaryotic N-terminal methylation motif LR085_19940 PF01131 DNA topoisomerase LR085_19940 PF01751 Toprim domain LR085_19940 PF13368 Topoisomerase C-terminal repeat LR085_19945 PF01300 Telomere recombination LR085_19960 PF00360 Phytochrome region LR085_19960 PF00990 Diguanylate cyclase, GGDEF domain LR085_19960 PF01590 GAF domain LR085_19960 PF00563 EAL domain LR085_19975 PF01343 Peptidase family S49 LR085_19980 PF01554 MatE LR085_19995 PF18074 Primosomal protein N C-terminal domain LR085_19995 PF00271 Helicase conserved C-terminal domain LR085_19995 PF00270 DEAD/DEAH box helicase LR085_19995 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LR085_19995 PF17764 3′ DNA-binding domain (3′BD) LR085_20000 PF00043 Glutathione S-transferase, C-terminal domain LR085_20000 PF13417 Glutathione S-transferase, N-terminal domain LR085_20015 PF07992 Pyridine nucleotide-disulphide oxidoreductase LR085_20020 PF03458 UPF0126 domain LR085_20025 PF04542 Sigma-70 region 2 LR085_20025 PF04545 Sigma-70, region 4 LR085_20030 PF03167 Uracil DNA glycosylase superfamily LR085_20035 PF00072 Response regulator receiver domain LR085_20035 PF01339 CheB methylesterase LR085_20040 PF18075 FtsX extracellular domain LR085_20045 PF00005 ABC transporter LR085_20050 PF00270 DEAD/DEAH box helicase LR085_20050 PF00271 Helicase conserved C-terminal domain LR085_20050 PF12300 ATP-dependent RNA helicase RhlB LR085_20055 PF00085 Thioredoxin LR085_20060 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LR085_20060 PF07498 Rho termination factor, N-terminal domain LR085_20060 PF07497 Rho termination factor, RNA-binding domain LR085_20070 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LR085_20075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_20075 PF03466 LysR substrate binding domain LR085_20085 PF03971 Monomeric isocitrate dehydrogenase LR085_20095 PF00756 Putative esterase LR085_20095 PF01476 LysM domain LR085_20100 PF14489 QueF-like protein LR085_20100 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LR085_20105 PF07687 Peptidase dimerisation domain LR085_20105 PF01546 Peptidase family M20/M25/M40 LR085_20110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LR085_20115 PF00873 AcrB/AcrD/AcrF family LR085_20120 PF00873 AcrB/AcrD/AcrF family LR085_20140 PF04542 Sigma-70 region 2 LR085_20140 PF08281 Sigma-70, region 4 LR085_20145 PF07063 Domain of unknown function (DUF1338) LR085_20185 PF01427 D-ala-D-ala dipeptidase LR085_20190 PF04717 Type VI secretion system, phage-baseplate injector LR085_20190 PF01471 Putative peptidoglycan binding domain LR085_20205 PF01510 N-acetylmuramoyl-L-alanine amidase LR085_20215 PF13378 Enolase C-terminal domain-like LR085_20215 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LR085_20225 PF13520 Amino acid permease LR085_20245 PF07995 Glucose / Sorbosone dehydrogenase LR085_20250 PF00933 Glycosyl hydrolase family 3 N terminal domain LR085_20250 PF14310 Fibronectin type III-like domain LR085_20250 PF01915 Glycosyl hydrolase family 3 C-terminal domain LR085_20255 PF02152 Dihydroneopterin aldolase LR085_20260 PF00814 Glycoprotease family LR085_20265 PF01165 Ribosomal protein S21 LR085_20270 PF09424 Yqey-like protein LR085_20275 PF03631 Virulence factor BrkB LR085_20280 PF08278 DNA primase DnaG DnaB-binding LR085_20280 PF08275 DNA primase catalytic core, N-terminal domain LR085_20280 PF01807 CHC2 zinc finger LR085_20280 PF10410 DnaB-helicase binding domain of primase LR085_20290 PF13593 SBF-like CPA transporter family (DUF4137) LR085_20295 PF11412 Disulphide bond corrector protein DsbC LR085_20295 PF02683 Cytochrome C biogenesis protein transmembrane region LR085_20300 PF01040 UbiA prenyltransferase family LR085_20325 PF00510 Cytochrome c oxidase subunit III LR085_20330 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 LR085_20340 PF00115 Cytochrome C and Quinol oxidase polypeptide I LR085_20345 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LR085_20345 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LR085_20355 PF00171 Aldehyde dehydrogenase family LR085_20355 PF01619 Proline dehydrogenase LR085_20355 PF14850 DNA-binding domain of Proline dehydrogenase LR085_20355 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LR085_20390 PF00579 tRNA synthetases class I (W and Y) LR085_20395 PF01551 Peptidase family M23 LR085_20395 PF04225 Opacity-associated protein A LysM-like domain LR085_20400 PF03702 Anhydro-N-acetylmuramic acid kinase LR085_20410 PF07690 Major Facilitator Superfamily LR085_20420 PF03372 Endonuclease/Exonuclease/phosphatase family LR085_20425 PF00156 Phosphoribosyl transferase domain LR085_20435 PF13614 AAA domain LR085_20440 PF02195 ParB-like nuclease domain LR085_20440 PF17762 HTH domain found in ParB protein LR085_20455 PF01370 NAD dependent epimerase/dehydratase family LR085_20460 PF00535 Glycosyl transferase family 2 LR085_20475 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LR085_20475 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LR085_20475 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LR085_20475 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LR085_20480 PF00692 dUTPase LR085_20485 PF04127 DNA / pantothenate metabolism flavoprotein LR085_20485 PF02441 Flavoprotein LR085_20490 PF04002 RadC-like JAB domain LR085_20495 PF03485 Arginyl tRNA synthetase N terminal domain LR085_20495 PF00750 tRNA synthetases class I (R) LR085_20495 PF05746 DALR anticodon binding domain LR085_20510 PF00106 short chain dehydrogenase LR085_20515 PF01757 Acyltransferase family LR085_20525 PF03033 Glycosyltransferase family 28 N-terminal domain LR085_20530 PF00501 AMP-binding enzyme LR085_20530 PF13193 AMP-binding enzyme C-terminal domain LR085_20530 PF00668 Condensation domain LR085_20530 PF00550 Phosphopantetheine attachment site LR085_20530 PF00975 Thioesterase domain LR085_20535 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LR085_20535 PF17944 Arginine decarboxylase C-terminal helical extension LR085_20535 PF17810 Arginine decarboxylase helical bundle domain LR085_20540 PF17284 Spermidine synthase tetramerisation domain LR085_20555 PF00543 Nitrogen regulatory protein P-II LR085_20560 PF04380 Membrane fusogenic activity LR085_20565 PF01078 Magnesium chelatase, subunit ChlI LR085_20565 PF13335 Magnesium chelatase, subunit ChlI C-terminal LR085_20580 PF12792 CSS motif domain associated with EAL LR085_20580 PF00563 EAL domain LR085_20585 PF00487 Fatty acid desaturase LR085_20590 PF00175 Oxidoreductase NAD-binding domain LR085_20590 PF00111 2Fe-2S iron-sulfur cluster binding domain LR085_20590 PF00970 Oxidoreductase FAD-binding domain LR085_20595 PF00440 Bacterial regulatory proteins, tetR family LR085_20615 PF01139 tRNA-splicing ligase RtcB LR085_20660 PF01370 NAD dependent epimerase/dehydratase family LR085_20660 PF08338 Domain of unknown function (DUF1731) LR085_20665 PF07992 Pyridine nucleotide-disulphide oxidoreductase LR085_20665 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LR085_20675 PF00072 Response regulator receiver domain LR085_20675 PF00486 Transcriptional regulatory protein, C terminal LR085_20680 PF08521 Two-component sensor kinase N-terminal LR085_20680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_20680 PF00512 His Kinase A (phospho-acceptor) domain LR085_20700 PF00595 PDZ domain LR085_20720 PF01594 AI-2E family transporter LR085_20725 PF13419 Haloacid dehalogenase-like hydrolase LR085_20730 PF00883 Cytosol aminopeptidase family, catalytic domain LR085_20730 PF02789 Cytosol aminopeptidase family, N-terminal domain LR085_20750 PF00072 Response regulator receiver domain LR085_20750 PF00196 Bacterial regulatory proteins, luxR family LR085_20755 PF07730 Histidine kinase LR085_20760 PF13533 Biotin-lipoyl like LR085_20765 PF00005 ABC transporter LR085_20785 PF00892 EamA-like transporter family LR085_20790 PF00892 EamA-like transporter family LR085_20805 PF00753 Metallo-beta-lactamase superfamily LR085_20810 PF00579 tRNA synthetases class I (W and Y) LR085_20815 PF05532 CsbD-like LR085_20855 PF02223 Thymidylate kinase LR085_20860 PF12833 Helix-turn-helix domain LR085_20860 PF02311 AraC-like ligand binding domain LR085_20885 PF03309 Type III pantothenate kinase LR085_20890 PF02237 Biotin protein ligase C terminal domain LR085_20890 PF03099 Biotin/lipoate A/B protein ligase family LR085_20890 PF08279 HTH domain LR085_20900 PF06167 Glucose-regulated metallo-peptidase M90 LR085_20915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_20920 PF00072 Response regulator receiver domain LR085_20920 PF00486 Transcriptional regulatory protein, C terminal LR085_20930 PF01207 Dihydrouridine synthase (Dus) LR085_20950 PF00199 Catalase LR085_20950 PF06628 Catalase-related immune-responsive LR085_20955 PF06733 DEAD_2 LR085_20955 PF13307 Helicase C-terminal domain LR085_20970 PF01488 Shikimate / quinate 5-dehydrogenase LR085_20970 PF08501 Shikimate dehydrogenase substrate binding domain LR085_20970 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LR085_20980 PF00667 FAD binding domain LR085_20980 PF00258 Flavodoxin LR085_20980 PF00175 Oxidoreductase NAD-binding domain LR085_20985 PF00490 Delta-aminolevulinic acid dehydratase LR085_21020 PF00043 Glutathione S-transferase, C-terminal domain LR085_21020 PF02798 Glutathione S-transferase, N-terminal domain LR085_21040 PF04820 Tryptophan halogenase LR085_21060 PF00005 ABC transporter LR085_21070 PF01381 Helix-turn-helix LR085_21080 PF02583 Metal-sensitive transcriptional repressor LR085_21085 PF01545 Cation efflux family LR085_21090 PF01229 Glycosyl hydrolases family 39 LR085_21095 PF00175 Oxidoreductase NAD-binding domain LR085_21095 PF01383 CpcD/allophycocyanin linker domain LR085_21100 PF00005 ABC transporter LR085_21105 PF01061 ABC-2 type transporter LR085_21115 PF08546 Ketopantoate reductase PanE/ApbA C terminal LR085_21115 PF02558 Ketopantoate reductase PanE/ApbA LR085_21130 PF03061 Thioesterase superfamily LR085_21145 PF00268 Ribonucleotide reductase, small chain LR085_21160 PF13380 CoA binding domain LR085_21160 PF00583 Acetyltransferase (GNAT) family LR085_21160 PF13607 Succinyl-CoA ligase like flavodoxin domain LR085_21170 PF00571 CBS domain LR085_21170 PF01769 Divalent cation transporter LR085_21170 PF03448 MgtE intracellular N domain LR085_21175 PF00194 Eukaryotic-type carbonic anhydrase LR085_21180 PF00999 Sodium/hydrogen exchanger family LR085_21180 PF02254 TrkA-N domain LR085_21185 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LR085_21185 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LR085_21190 PF00723 Glycosyl hydrolases family 15 LR085_21195 PF01451 Low molecular weight phosphotyrosine protein phosphatase LR085_21205 PF05166 YcgL domain LR085_21210 PF00109 Beta-ketoacyl synthase, N-terminal domain LR085_21210 PF02801 Beta-ketoacyl synthase, C-terminal domain LR085_21220 PF00535 Glycosyl transferase family 2 LR085_21225 PF04820 Tryptophan halogenase LR085_21285 PF00550 Phosphopantetheine attachment site LR085_21320 PF01218 Coproporphyrinogen III oxidase LR085_21325 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LR085_21325 PF00476 DNA polymerase family A LR085_21325 PF01367 5'-3' exonuclease, C-terminal SAM fold LR085_21325 PF01612 3'-5' exonuclease LR085_21345 PF14602 Hexapeptide repeat of succinyl-transferase LR085_21345 PF12464 Maltose acetyltransferase LR085_21355 PF00580 UvrD/REP helicase N-terminal domain LR085_21355 PF13361 UvrD-like helicase C-terminal domain LR085_21365 PF13091 PLD-like domain LR085_21365 PF13396 Phospholipase_D-nuclease N-terminal LR085_21370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_21370 PF03466 LysR substrate binding domain LR085_21375 PF03737 Aldolase/RraA LR085_21380 PF04303 PrpF protein LR085_21385 PF04909 Amidohydrolase LR085_21390 PF00471 Ribosomal protein L33 LR085_21395 PF00830 Ribosomal L28 family LR085_21405 PF00873 AcrB/AcrD/AcrF family LR085_21415 PF00529 HlyD membrane-fusion protein of T1SS LR085_21415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LR085_21435 PF02527 rRNA small subunit methyltransferase G LR085_21440 PF09423 PhoD-like phosphatase LR085_21440 PF16655 PhoD-like phosphatase, N-terminal domain LR085_21450 PF13936 Helix-turn-helix domain LR085_21450 PF00665 Integrase core domain LR085_21455 PF04222 Protein of unknown function (DUF416) LR085_21500 PF01648 4'-phosphopantetheinyl transferase superfamily LR085_21505 PF04226 Transglycosylase associated protein LR085_21555 PF00480 ROK family LR085_21565 PF00639 PPIC-type PPIASE domain LR085_21565 PF09312 SurA N-terminal domain LR085_21580 PF00474 Sodium:solute symporter family LR085_21585 PF04341 Protein of unknown function, DUF485 LR085_21595 PF16177 Acetyl-coenzyme A synthetase N-terminus LR085_21595 PF00501 AMP-binding enzyme LR085_21595 PF13193 AMP-binding enzyme C-terminal domain LR085_21600 PF00196 Bacterial regulatory proteins, luxR family LR085_21600 PF00072 Response regulator receiver domain LR085_21620 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain LR085_21620 PF04616 Glycosyl hydrolases family 43 LR085_21625 PF00248 Aldo/keto reductase family LR085_21640 PF01557 Fumarylacetoacetate (FAA) hydrolase family LR085_21645 PF13378 Enolase C-terminal domain-like LR085_21645 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LR085_21650 PF05336 L-rhamnose mutarotase LR085_21655 PF07690 Major Facilitator Superfamily LR085_21660 PF09339 IclR helix-turn-helix domain LR085_21660 PF01614 Bacterial transcriptional regulator LR085_21675 PF02659 Putative manganese efflux pump LR085_21680 PF00072 Response regulator receiver domain LR085_21680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_21680 PF09456 RcsC Alpha-Beta-Loop (ABL) LR085_21680 PF00512 His Kinase A (phospho-acceptor) domain LR085_21685 PF06165 Glycosyltransferase family 36 LR085_21685 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LR085_21700 PF01011 PQQ enzyme repeat LR085_21700 PF13570 PQQ-like domain LR085_21700 PF13360 PQQ-like domain LR085_21725 PF04357 TamB, inner membrane protein subunit of TAM complex LR085_21730 PF01103 Surface antigen LR085_21730 PF17243 POTRA domain TamA domain 1 LR085_21735 PF05746 DALR anticodon binding domain LR085_21735 PF02092 Glycyl-tRNA synthetase beta subunit LR085_21740 PF02091 Glycyl-tRNA synthetase alpha subunit LR085_21745 PF00437 Type II/IV secretion system protein LR085_21745 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LR085_21750 PF00117 Glutamine amidotransferase class-I LR085_21750 PF00958 GMP synthase C terminal domain LR085_21765 PF02416 mttA/Hcf106 family LR085_21770 PF02416 mttA/Hcf106 family LR085_21780 PF00762 Ferrochelatase LR085_21785 PF12697 Alpha/beta hydrolase family LR085_21795 PF04381 Putative exonuclease, RdgC LR085_21800 PF01171 PP-loop family LR085_21810 PF00356 Bacterial regulatory proteins, lacI family LR085_21815 PF07477 Glycosyl hydrolase family 67 C-terminus LR085_21815 PF03648 Glycosyl hydrolase family 67 N-terminus LR085_21815 PF07488 Glycosyl hydrolase family 67 middle domain LR085_21825 PF13378 Enolase C-terminal domain-like LR085_21825 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LR085_21830 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain LR085_21830 PF04616 Glycosyl hydrolases family 43 LR085_21835 PF07691 PA14 domain LR085_21835 PF01915 Glycosyl hydrolase family 3 C-terminal domain LR085_21835 PF00933 Glycosyl hydrolase family 3 N terminal domain LR085_21835 PF14310 Fibronectin type III-like domain LR085_21840 PF08125 Mannitol dehydrogenase C-terminal domain LR085_21840 PF01232 Mannitol dehydrogenase Rossmann domain LR085_21880 PF08450 SMP-30/Gluconolactonase/LRE-like region LR085_21890 PF00331 Glycosyl hydrolase family 10 LR085_21895 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 LR085_21895 PF00703 Glycosyl hydrolases family 2 LR085_21895 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LR085_21895 PF02837 Glycosyl hydrolases family 2, sugar binding domain LR085_21895 PF16355 Domain of unknown function (DUF4982) LR085_21900 PF02614 Glucuronate isomerase LR085_21905 PF03422 Carbohydrate binding module (family 6) LR085_21905 PF00331 Glycosyl hydrolase family 10 LR085_21905 PF00553 Cellulose binding domain LR085_21925 PF04616 Glycosyl hydrolases family 43 LR085_21955 PF00698 Acyl transferase domain LR085_21955 PF08240 Alcohol dehydrogenase GroES-like domain LR085_21955 PF16197 Ketoacyl-synthetase C-terminal extension LR085_21955 PF00109 Beta-ketoacyl synthase, N-terminal domain LR085_21955 PF02801 Beta-ketoacyl synthase, C-terminal domain LR085_21955 PF08659 KR domain LR085_21955 PF00550 Phosphopantetheine attachment site LR085_21955 PF14765 Polyketide synthase dehydratase LR085_21955 PF00107 Zinc-binding dehydrogenase LR085_21960 PF01553 Acyltransferase LR085_21970 PF00356 Bacterial regulatory proteins, lacI family LR085_21985 PF04820 Tryptophan halogenase LR085_21990 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LR085_21995 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) LR085_22000 PF04337 Protein of unknown function, DUF480 LR085_22010 PF13302 Acetyltransferase (GNAT) domain LR085_22015 PF00580 UvrD/REP helicase N-terminal domain LR085_22015 PF13361 UvrD-like helicase C-terminal domain LR085_22045 PF00265 Thymidine kinase LR085_22050 PF00360 Phytochrome region LR085_22050 PF08446 PAS fold LR085_22050 PF00512 His Kinase A (phospho-acceptor) domain LR085_22050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LR085_22050 PF01590 GAF domain LR085_22055 PF04349 Periplasmic glucan biosynthesis protein, MdoG LR085_22070 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LR085_22070 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LR085_22070 PF06827 Zinc finger found in FPG and IleRS LR085_22100 PF03594 Benzoate membrane transport protein LR085_22110 PF00360 Phytochrome region LR085_22110 PF01590 GAF domain LR085_22110 PF08446 PAS fold LR085_22110 PF13426 PAS domain LR085_22115 PF01126 Heme oxygenase LR085_22120 PF07690 Major Facilitator Superfamily LR085_22125 PF01263 Aldose 1-epimerase LR085_22135 PF02810 SEC-C motif LR085_22145 PF01925 Sulfite exporter TauE/SafE LR085_22150 PF00593 TonB dependent receptor LR085_22150 PF07715 TonB-dependent Receptor Plug Domain LR085_22175 PF01227 GTP cyclohydrolase I LR085_22185 PF07869 Protein of unknown function (DUF1656) LR085_22190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LR085_22190 PF00529 HlyD membrane-fusion protein of T1SS LR085_22195 PF02321 Outer membrane efflux protein LR085_22200 PF04632 Fusaric acid resistance protein family LR085_22205 PF00083 Sugar (and other) transporter LR085_22220 PF00106 short chain dehydrogenase LR085_22225 PF13396 Phospholipase_D-nuclease N-terminal LR085_22225 PF13091 PLD-like domain LR085_22300 PF00849 RNA pseudouridylate synthase LR085_22315 PF13614 AAA domain LR085_22345 PF01381 Helix-turn-helix LR085_22355 PF13361 UvrD-like helicase C-terminal domain LR085_22355 PF00580 UvrD/REP helicase N-terminal domain LR085_22355 PF12705 PD-(D/E)XK nuclease superfamily LR085_22360 PF17946 RecC C-terminal domain LR085_22395 PF00005 ABC transporter LR085_22400 PF02405 Permease MlaE LR085_22405 PF02470 MlaD protein LR085_22410 PF05494 MlaC protein LR085_22420 PF04333 MlaA lipoprotein LR085_22430 PF00255 Glutathione peroxidase LR085_22440 PF02646 RmuC family LR085_22450 PF00107 Zinc-binding dehydrogenase LR085_22450 PF08240 Alcohol dehydrogenase GroES-like domain LR085_22455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LR085_22455 PF03466 LysR substrate binding domain LR085_22470 PF13520 Amino acid permease LR085_22480 PF00593 TonB dependent receptor LR085_22480 PF07715 TonB-dependent Receptor Plug Domain LR085_22485 PF10947 Protein of unknown function (DUF2628) LR085_22490 PF00990 Diguanylate cyclase, GGDEF domain LR085_22495 PF05651 Putative sugar diacid recognition LR085_22495 PF17853 GGDEF-like domain LR085_22495 PF13556 PucR C-terminal helix-turn-helix domain LR085_22500 PF02595 Glycerate kinase family LR085_22505 PF07690 Major Facilitator Superfamily LR085_22525 PF17785 PUA-like domain LR085_22525 PF10672 S-adenosylmethionine-dependent methyltransferase LR085_22530 PF03741 Integral membrane protein TerC family LR085_22535 PF01694 Rhomboid family LR085_22555 PF03009 Glycerophosphoryl diester phosphodiesterase family LR085_22570 PF01569 PAP2 superfamily LR085_22575 PF00593 TonB dependent receptor LR085_22580 PF01926 50S ribosome-binding GTPase LR085_22580 PF12631 MnmE helical domain LR085_22580 PF10396 GTP-binding protein TrmE N-terminus LR085_22585 PF01522 Polysaccharide deacetylase LR085_22590 PF02096 60Kd inner membrane protein LR085_22590 PF14849 YidC periplasmic domain LR085_22595 PF00825 Ribonuclease P LR085_22600 PF00468 Ribosomal protein L34