locus-tag class description XC_0001 PF11638 DnaA N-terminal domain XC_0001 PF00308 Bacterial dnaA protein XC_0001 PF08299 Bacterial dnaA protein helix-turn-helix XC_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain XC_0002 PF02767 DNA polymerase III beta subunit, central domain XC_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain XC_0003 PF02463 RecF/RecN/SMC N terminal domain XC_0004 PF18053 DNA gyrase B subunit insert domain XC_0004 PF01751 Toprim domain XC_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_0004 PF00204 DNA gyrase B XC_0004 PF00986 DNA gyrase B subunit, carboxyl terminus XC_0006 PF01435 Peptidase family M48 XC_0008 PF03544 Gram-negative bacterial TonB protein C-terminal XC_0009 PF01618 MotA/TolQ/ExbB proton channel family XC_0010 PF02472 Biopolymer transport protein ExbD/TolR XC_0011 PF02472 Biopolymer transport protein ExbD/TolR XC_0012 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ XC_0014 PF13396 Phospholipase_D-nuclease N-terminal XC_0014 PF13091 PLD-like domain XC_0015 PF04055 Radical SAM superfamily XC_0017 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) XC_0020 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XC_0020 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XC_0020 PF01842 ACT domain XC_0021 PF13180 PDZ domain XC_0021 PF03572 Peptidase family S41 XC_0022 PF01551 Peptidase family M23 XC_0024 PF04389 Peptidase family M28 XC_0026 PF00150 Cellulase (glycosyl hydrolase family 5) XC_0027 PF00150 Cellulase (glycosyl hydrolase family 5) XC_0028 PF00150 Cellulase (glycosyl hydrolase family 5) XC_0029 PF08240 Alcohol dehydrogenase GroES-like domain XC_0029 PF00107 Zinc-binding dehydrogenase XC_0031 PF07992 Pyridine nucleotide-disulphide oxidoreductase XC_0031 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster XC_0032 PF00310 Glutamine amidotransferases class-II XC_0032 PF04898 Glutamate synthase central domain XC_0032 PF01645 Conserved region in glutamate synthase XC_0032 PF01493 GXGXG motif XC_0035 PF00398 Ribosomal RNA adenine dimethylase XC_0037 PF05726 Pirin C-terminal cupin domain XC_0037 PF02678 Pirin XC_0040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_0040 PF03466 LysR substrate binding domain XC_0043 PF03466 LysR substrate binding domain XC_0043 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_0054 PF00270 DEAD/DEAH box helicase XC_0054 PF09369 Domain of unknown function (DUF1998) XC_0054 PF00271 Helicase conserved C-terminal domain XC_0055 PF02661 Fic/DOC family XC_0055 PF13784 Fic/DOC family N-terminal XC_0056 PF03006 Haemolysin-III related XC_0060 PF02525 Flavodoxin-like fold XC_0062 PF01638 HxlR-like helix-turn-helix XC_0063 PF13614 AAA domain XC_0070 PF01872 RibD C-terminal domain XC_0071 PF05532 CsbD-like XC_0072 PF00196 Bacterial regulatory proteins, luxR family XC_0072 PF00072 Response regulator receiver domain XC_0077 PF16485 Protealysin propeptide XC_0077 PF01447 Thermolysin metallopeptidase, catalytic domain XC_0077 PF02868 Thermolysin metallopeptidase, alpha-helical domain XC_0079 PF13344 Haloacid dehalogenase-like hydrolase XC_0079 PF00293 NUDIX domain XC_0080 PF01594 AI-2E family transporter XC_0081 PF07859 alpha/beta hydrolase fold XC_0083 PF00085 Thioredoxin XC_0084 PF00083 Sugar (and other) transporter XC_0084 PF08946 Osmosensory transporter coiled coil XC_0092 PF07726 ATPase family associated with various cellular activities (AAA) XC_0092 PF17863 AAA lid domain XC_0098 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain XC_0100 PF00155 Aminotransferase class I and II XC_0101 PF00593 TonB dependent receptor XC_0101 PF07715 TonB-dependent Receptor Plug Domain XC_0104 PF00171 Aldehyde dehydrogenase family XC_0108 PF02735 Ku70/Ku80 beta-barrel domain XC_0109 PF13298 DNA polymerase Ligase (LigD) XC_0109 PF04679 ATP dependent DNA ligase C terminal region XC_0109 PF01068 ATP dependent DNA ligase domain XC_0110 PF01070 FMN-dependent dehydrogenase XC_0112 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family XC_0113 PF07730 Histidine kinase XC_0114 PF00072 Response regulator receiver domain XC_0114 PF00196 Bacterial regulatory proteins, luxR family XC_0118 PF18500 CadC C-terminal domain 1 XC_0118 PF00486 Transcriptional regulatory protein, C terminal XC_0119 PF12241 Trans-2-enoyl-CoA reductase catalytic region XC_0119 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase XC_0119 PF07055 Enoyl reductase FAD binding domain XC_0122 PF00294 pfkB family carbohydrate kinase XC_0125 PF01095 Pectinesterase XC_0132 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region XC_0133 PF05598 Transposase domain (DUF772) XC_0133 PF01609 Transposase DDE domain XC_0137 PF05598 Transposase domain (DUF772) XC_0141 PF00128 Alpha amylase, catalytic domain XC_0141 PF11896 Domain of unknown function (DUF3416) XC_0142 PF00128 Alpha amylase, catalytic domain XC_0142 PF16657 Maltogenic Amylase, C-terminal domain XC_0143 PF02806 Alpha amylase, C-terminal all-beta domain XC_0143 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XC_0143 PF00128 Alpha amylase, catalytic domain XC_0150 PF00248 Aldo/keto reductase family XC_0151 PF13472 GDSL-like Lipase/Acylhydrolase family XC_0152 PF00135 Carboxylesterase family XC_0153 PF13472 GDSL-like Lipase/Acylhydrolase family XC_0153 PF07859 alpha/beta hydrolase fold XC_0155 PF03480 Bacterial extracellular solute-binding protein, family 7 XC_0157 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component XC_0158 PF04616 Glycosyl hydrolases family 43 XC_0158 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XC_0159 PF00356 Bacterial regulatory proteins, lacI family XC_0160 PF04962 KduI/IolB family XC_0163 PF00657 GDSL-like Lipase/Acylhydrolase XC_0165 PF00351 Biopterin-dependent aromatic amino acid hydroxylase XC_0166 PF01037 Lrp/AsnC ligand binding domain XC_0167 PF07715 TonB-dependent Receptor Plug Domain XC_0167 PF07660 Secretin and TonB N terminus short domain XC_0167 PF00593 TonB dependent receptor XC_0168 PF01734 Patatin-like phospholipase XC_0170 PF00005 ABC transporter XC_0173 PF00005 ABC transporter XC_0173 PF00571 CBS domain XC_0174 PF00528 Binding-protein-dependent transport system inner membrane component XC_0176 PF12867 DinB superfamily XC_0176 PF03781 Sulfatase-modifying factor enzyme 1 XC_0177 PF10017 Histidine-specific methyltransferase, SAM-dependent XC_0183 PF10609 NUBPL iron-transfer P-loop NTPase XC_0183 PF01883 Iron-sulfur cluster assembly protein XC_0184 PF00300 Histidine phosphatase superfamily (branch 1) XC_0185 PF04264 YceI-like domain XC_0186 PF13091 PLD-like domain XC_0187 PF03061 Thioesterase superfamily XC_0191 PF01161 Phosphatidylethanolamine-binding protein XC_0193 PF02673 Bacitracin resistance protein BacA XC_0194 PF03951 Glutamine synthetase, beta-Grasp domain XC_0194 PF00120 Glutamine synthetase, catalytic domain XC_0195 PF00543 Nitrogen regulatory protein P-II XC_0196 PF00909 Ammonium Transporter Family XC_0197 PF00989 PAS fold XC_0197 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_0197 PF00512 His Kinase A (phospho-acceptor) domain XC_0198 PF02954 Bacterial regulatory protein, Fis family XC_0198 PF00158 Sigma-54 interaction domain XC_0198 PF00072 Response regulator receiver domain XC_0200 PF00080 Copper/zinc superoxide dismutase (SODC) XC_0201 PF00080 Copper/zinc superoxide dismutase (SODC) XC_0202 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XC_0204 PF02803 Thiolase, C-terminal domain XC_0204 PF00108 Thiolase, N-terminal domain XC_0212 PF00581 Rhodanese-like domain XC_0213 PF02556 Preprotein translocase subunit SecB XC_0214 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus XC_0214 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XC_0216 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XC_0216 PF00205 Thiamine pyrophosphate enzyme, central domain XC_0216 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XC_0219 PF00588 SpoU rRNA Methylase family XC_0222 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XC_0222 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XC_0223 PF13784 Fic/DOC family N-terminal XC_0223 PF02661 Fic/DOC family XC_0224 PF01555 DNA methylase XC_0226 PF00561 alpha/beta hydrolase fold XC_0227 PF03692 Putative zinc- or iron-chelating domain XC_0228 PF00501 AMP-binding enzyme XC_0229 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XC_0232 PF07478 D-ala D-ala ligase C-terminus XC_0232 PF01820 D-ala D-ala ligase N-terminus XC_0234 PF03109 ABC1 family XC_0235 PF00849 RNA pseudouridylate synthase XC_0237 PF00472 RF-1 domain XC_0239 PF01112 Asparaginase XC_0240 PF01432 Peptidase family M3 XC_0242 PF12706 Beta-lactamase superfamily domain XC_0245 PF12833 Helix-turn-helix domain XC_0246 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_0246 PF03466 LysR substrate binding domain XC_0247 PF01274 Malate synthase XC_0248 PF00463 Isocitrate lyase family XC_0249 PF08448 PAS fold XC_0249 PF00990 Diguanylate cyclase, GGDEF domain XC_0253 PF00326 Prolyl oligopeptidase family XC_0254 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XC_0254 PF02785 Biotin carboxylase C-terminal domain XC_0254 PF00364 Biotin-requiring enzyme XC_0254 PF00289 Biotin carboxylase, N-terminal domain XC_0255 PF01039 Carboxyl transferase domain XC_0256 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XC_0256 PF02770 Acyl-CoA dehydrogenase, middle domain XC_0256 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XC_0264 PF13442 Cytochrome C oxidase, cbb3-type, subunit III XC_0267 PF07683 Cobalamin synthesis protein cobW C-terminal domain XC_0267 PF02492 CobW/HypB/UreG, nucleotide-binding domain XC_0271 PF03969 AFG1-like ATPase XC_0273 PF01047 MarR family XC_0274 PF02566 OsmC-like protein XC_0276 PF07859 alpha/beta hydrolase fold XC_0279 PF00248 Aldo/keto reductase family XC_0280 PF16884 N-terminal domain of oxidoreductase XC_0280 PF00107 Zinc-binding dehydrogenase XC_0283 PF00849 RNA pseudouridylate synthase XC_0285 PF00271 Helicase conserved C-terminal domain XC_0285 PF04408 Helicase associated domain (HA2) XC_0285 PF00270 DEAD/DEAH box helicase XC_0285 PF08482 ATP-dependent helicase C-terminal XC_0286 PF02203 Tar ligand binding domain homologue XC_0286 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_0286 PF00672 HAMP domain XC_0287 PF07308 Protein of unknown function (DUF1456) XC_0288 PF00576 HIUase/Transthyretin family XC_0289 PF13454 FAD-NAD(P)-binding XC_0293 PF00266 Aminotransferase class-V XC_0294 PF07687 Peptidase dimerisation domain XC_0294 PF01546 Peptidase family M20/M25/M40 XC_0295 PF03466 LysR substrate binding domain XC_0295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_0298 PF07690 Major Facilitator Superfamily XC_0299 PF03372 Endonuclease/Exonuclease/phosphatase family XC_0300 PF13091 PLD-like domain XC_0302 PF01425 Amidase XC_0303 PF01156 Inosine-uridine preferring nucleoside hydrolase XC_0305 PF00860 Permease family XC_0307 PF00111 2Fe-2S iron-sulfur cluster binding domain XC_0308 PF00355 Rieske [2Fe-2S] domain XC_0309 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_0309 PF03466 LysR substrate binding domain XC_0310 PF01026 TatD related DNase XC_0312 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_0312 PF03466 LysR substrate binding domain XC_0313 PF07690 Major Facilitator Superfamily XC_0318 PF02146 Sir2 family XC_0319 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XC_0320 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XC_0320 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XC_0322 PF00551 Formyl transferase XC_0324 PF00106 short chain dehydrogenase XC_0326 PF02219 Methylenetetrahydrofolate reductase XC_0327 PF03466 LysR substrate binding domain XC_0327 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_0328 PF03358 NADPH-dependent FMN reductase XC_0330 PF01717 Cobalamin-independent synthase, Catalytic domain XC_0330 PF08267 Cobalamin-independent synthase, N-terminal domain XC_0333 PF05368 NmrA-like family XC_0334 PF01638 HxlR-like helix-turn-helix XC_0336 PF02203 Tar ligand binding domain homologue XC_0336 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_0336 PF00672 HAMP domain XC_0347 PF11008 Protein of unknown function (DUF2846) XC_0355 PF13495 Phage integrase, N-terminal SAM-like domain XC_0355 PF00589 Phage integrase family XC_0356 PF00920 Dehydratase family XC_0357 PF03692 Putative zinc- or iron-chelating domain XC_0360 PF00132 Bacterial transferase hexapeptide (six repeats) XC_0361 PF07690 Major Facilitator Superfamily XC_0362 PF01966 HD domain XC_0362 PF11871 Domain of unknown function (DUF3391) XC_0366 PF00171 Aldehyde dehydrogenase family XC_0368 PF01494 FAD binding domain XC_0370 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XC_0370 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XC_0371 PF00230 Major intrinsic protein XC_0372 PF16901 C-terminal domain of alpha-glycerophosphate oxidase XC_0372 PF01266 FAD dependent oxidoreductase XC_0373 PF00455 DeoR C terminal sensor domain XC_0373 PF08220 DeoR-like helix-turn-helix domain XC_0375 PF00355 Rieske [2Fe-2S] domain XC_0376 PF01144 Coenzyme A transferase XC_0377 PF01144 Coenzyme A transferase XC_0378 PF02803 Thiolase, C-terminal domain XC_0378 PF00108 Thiolase, N-terminal domain XC_0379 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal XC_0379 PF00775 Dioxygenase XC_0380 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal XC_0380 PF00775 Dioxygenase XC_0381 PF00206 Lyase XC_0381 PF10397 Adenylosuccinate lyase C-terminus XC_0382 PF12146 Serine aminopeptidase, S33 XC_0383 PF02627 Carboxymuconolactone decarboxylase family XC_0385 PF01614 Bacterial transcriptional regulator XC_0385 PF09339 IclR helix-turn-helix domain XC_0387 PF07859 alpha/beta hydrolase fold XC_0388 PF10677 Protein of unknown function (DUF2490) XC_0389 PF13932 GidA associated domain XC_0389 PF01134 Glucose inhibited division protein A XC_0391 PF13291 ACT domain XC_0391 PF00291 Pyridoxal-phosphate dependent enzyme XC_0395 PF13649 Methyltransferase domain XC_0397 PF12697 Alpha/beta hydrolase family XC_0399 PF00155 Aminotransferase class I and II XC_0400 PF04055 Radical SAM superfamily XC_0400 PF06968 Biotin and Thiamin Synthesis associated domain XC_0402 PF01040 UbiA prenyltransferase family XC_0403 PF13356 Arm DNA-binding domain XC_0403 PF00589 Phage integrase family XC_0405 PF00593 TonB dependent receptor XC_0405 PF07715 TonB-dependent Receptor Plug Domain XC_0407 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XC_0407 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XC_0409 PF07715 TonB-dependent Receptor Plug Domain XC_0409 PF00593 TonB dependent receptor XC_0410 PF05598 Transposase domain (DUF772) XC_0412 PF01527 Transposase XC_0413 PF13276 HTH-like domain XC_0413 PF13683 Integrase core domain XC_0415 PF00924 Mechanosensitive ion channel XC_0415 PF12794 Mechanosensitive ion channel inner membrane domain 1 XC_0415 PF12795 Mechanosensitive ion channel porin domain XC_0416 PF00884 Sulfatase XC_0417 PF03109 ABC1 family XC_0418 PF05661 Protein of unknown function (DUF808) XC_0420 PF00563 EAL domain XC_0420 PF00990 Diguanylate cyclase, GGDEF domain XC_0420 PF03707 Bacterial signalling protein N terminal repeat XC_0421 PF00534 Glycosyl transferases group 1 XC_0421 PF08323 Starch synthase catalytic domain XC_0422 PF00128 Alpha amylase, catalytic domain XC_0422 PF02806 Alpha amylase, C-terminal all-beta domain XC_0422 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XC_0423 PF11941 Domain of unknown function (DUF3459) XC_0423 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XC_0423 PF00128 Alpha amylase, catalytic domain XC_0424 PF02446 4-alpha-glucanotransferase XC_0425 PF00128 Alpha amylase, catalytic domain XC_0427 PF00128 Alpha amylase, catalytic domain XC_0427 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XC_0428 PF13460 NAD(P)H-binding XC_0431 PF06903 VirK protein XC_0432 PF02321 Outer membrane efflux protein XC_0433 PF00440 Bacterial regulatory proteins, tetR family XC_0435 PF00873 AcrB/AcrD/AcrF family XC_0438 PF00270 DEAD/DEAH box helicase XC_0438 PF00271 Helicase conserved C-terminal domain XC_0439 PF01609 Transposase DDE domain XC_0439 PF05598 Transposase domain (DUF772) XC_0440 PF05598 Transposase domain (DUF772) XC_0440 PF01609 Transposase DDE domain XC_0441 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XC_0441 PF00364 Biotin-requiring enzyme XC_0441 PF02817 e3 binding domain XC_0443 PF02779 Transketolase, pyrimidine binding domain XC_0443 PF02780 Transketolase, C-terminal domain XC_0444 PF00676 Dehydrogenase E1 component XC_0446 PF03301 Tryptophan 2,3-dioxygenase XC_0447 PF00854 POT family XC_0449 PF01047 MarR family XC_0450 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XC_0451 PF04480 Protein of unknown function (DUF559) XC_0452 PF04209 homogentisate 1,2-dioxygenase XC_0455 PF03334 Na+/H+ antiporter subunit XC_0456 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) XC_0458 PF00361 Proton-conducting membrane transporter XC_0459 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XC_0460 PF13244 Domain of unknown function (DUF4040) XC_0460 PF00361 Proton-conducting membrane transporter XC_0460 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter XC_0460 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XC_0467 PF01259 SAICAR synthetase XC_0468 PF01556 DnaJ C terminal domain XC_0468 PF00684 DnaJ central domain XC_0468 PF00226 DnaJ domain XC_0469 PF00834 Ribulose-phosphate 3 epimerase family XC_0472 PF00781 Diacylglycerol kinase catalytic domain XC_0473 PF00425 chorismate binding enzyme XC_0473 PF04715 Anthranilate synthase component I, N terminal region XC_0474 PF00155 Aminotransferase class I and II XC_0476 PF12008 Type I restriction and modification enzyme - subunit R C terminal XC_0476 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) XC_0476 PF18766 SWI2/SNF2 ATPase XC_0480 PF02384 N-6 DNA Methylase XC_0480 PF12161 HsdM N-terminal domain XC_0481 PF00117 Glutamine amidotransferase class-I XC_0482 PF01613 Flavin reductase like domain XC_0483 PF00591 Glycosyl transferase family, a/b domain XC_0483 PF02885 Glycosyl transferase family, helical bundle domain XC_0484 PF00218 Indole-3-glycerol phosphate synthase XC_0486 PF00027 Cyclic nucleotide-binding domain XC_0486 PF00325 Bacterial regulatory proteins, crp family XC_0487 PF02675 S-adenosylmethionine decarboxylase XC_0488 PF00893 Small Multidrug Resistance protein XC_0489 PF03232 Ubiquinone biosynthesis protein COQ7 XC_0490 PF00572 Ribosomal protein L13 XC_0491 PF00380 Ribosomal protein S9/S16 XC_0492 PF00293 NUDIX domain XC_0494 PF00210 Ferritin-like domain XC_0495 PF00512 His Kinase A (phospho-acceptor) domain XC_0495 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XC_0495 PF00072 Response regulator receiver domain XC_0495 PF01627 Hpt domain XC_0495 PF00672 HAMP domain XC_0495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_0496 PF00072 Response regulator receiver domain XC_0496 PF00486 Transcriptional regulatory protein, C terminal XC_0500 PF01521 Iron-sulphur cluster biosynthesis XC_0501 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain XC_0501 PF09297 NADH pyrophosphatase zinc ribbon domain XC_0501 PF00293 NUDIX domain XC_0502 PF03186 CobD/Cbib protein XC_0502 PF17113 Regulatory signalling modulator protein AmpE XC_0507 PF07690 Major Facilitator Superfamily XC_0508 PF12805 FUSC-like inner membrane protein yccS XC_0509 PF02844 Phosphoribosylglycinamide synthetase, N domain XC_0509 PF02843 Phosphoribosylglycinamide synthetase, C domain XC_0509 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain XC_0510 PF02142 MGS-like domain XC_0510 PF01808 AICARFT/IMPCHase bienzyme XC_0511 PF01066 CDP-alcohol phosphatidyltransferase XC_0512 PF12146 Serine aminopeptidase, S33 XC_0512 PF12147 Putative methyltransferase XC_0513 PF00782 Dual specificity phosphatase, catalytic domain XC_0519 PF00818 Ice nucleation protein repeat XC_0519 PF00818 Ice nucleation protein repeat XC_0520 PF02954 Bacterial regulatory protein, Fis family XC_0522 PF01381 Helix-turn-helix XC_0527 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XC_0527 PF02785 Biotin carboxylase C-terminal domain XC_0527 PF00289 Biotin carboxylase, N-terminal domain XC_0529 PF00364 Biotin-requiring enzyme XC_0530 PF01220 Dehydroquinase class II XC_0531 PF02683 Cytochrome C biogenesis protein transmembrane region XC_0531 PF11412 Disulphide bond corrector protein DsbC XC_0532 PF03091 CutA1 divalent ion tolerance protein XC_0533 PF04231 Endonuclease I XC_0534 PF00166 Chaperonin 10 Kd subunit XC_0535 PF00118 TCP-1/cpn60 chaperonin family XC_0536 PF00271 Helicase conserved C-terminal domain XC_0536 PF00176 SNF2 family N-terminal domain XC_0537 PF17191 RecG wedge domain XC_0537 PF00270 DEAD/DEAH box helicase XC_0537 PF13749 Putative ATP-dependent DNA helicase recG C-terminal XC_0539 PF01738 Dienelactone hydrolase family XC_0543 PF07715 TonB-dependent Receptor Plug Domain XC_0543 PF00593 TonB dependent receptor XC_0545 PF01527 Transposase XC_0546 PF13276 HTH-like domain XC_0546 PF13683 Integrase core domain XC_0548 PF00793 DAHP synthetase I family XC_0550 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain XC_0550 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain XC_0553 PF08450 SMP-30/Gluconolactonase/LRE-like region XC_0557 PF16220 Domain of unknown function (DUF4880) XC_0557 PF04773 FecR protein XC_0558 PF00593 TonB dependent receptor XC_0558 PF07715 TonB-dependent Receptor Plug Domain XC_0558 PF07660 Secretin and TonB N terminus short domain XC_0562 PF08335 GlnD PII-uridylyltransferase XC_0562 PF03710 Glutamate-ammonia ligase adenylyltransferase XC_0564 PF02592 Putative vitamin uptake transporter XC_0568 PF00881 Nitroreductase family XC_0569 PF04264 YceI-like domain XC_0571 PF13847 Methyltransferase domain XC_0571 PF03551 Transcriptional regulator PadR-like family XC_0572 PF16957 Malonate decarboxylase, alpha subunit, transporter XC_0573 PF06857 Malonate decarboxylase delta subunit (MdcD) XC_0574 PF01039 Carboxyl transferase domain XC_0576 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG XC_0577 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase XC_0578 PF00698 Acyl transferase domain XC_0578 PF08659 KR domain XC_0578 PF02801 Beta-ketoacyl synthase, C-terminal domain XC_0578 PF16197 Ketoacyl-synthetase C-terminal extension XC_0578 PF00109 Beta-ketoacyl synthase, N-terminal domain XC_0578 PF00550 Phosphopantetheine attachment site XC_0580 PF00392 Bacterial regulatory proteins, gntR family XC_0580 PF07729 FCD domain XC_0587 PF07745 Glycosyl hydrolase family 53 XC_0588 PF17831 Pyruvate dehydrogenase E1 component middle domain XC_0588 PF00456 Transketolase, thiamine diphosphate binding domain XC_0589 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) XC_0590 PF05598 Transposase domain (DUF772) XC_0597 PF13409 Glutathione S-transferase, N-terminal domain XC_0602 PF01433 Peptidase family M1 domain XC_0602 PF11838 ERAP1-like C-terminal domain XC_0609 PF03176 MMPL family XC_0609 PF12823 Domain of unknown function (DUF3817) XC_0611 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XC_0611 PF00326 Prolyl oligopeptidase family XC_0612 PF07759 Protein of unknown function (DUF1615) XC_0613 PF00990 Diguanylate cyclase, GGDEF domain XC_0613 PF05230 MASE2 domain XC_0614 PF02082 Transcriptional regulator XC_0616 PF13192 Thioredoxin domain XC_0616 PF07992 Pyridine nucleotide-disulphide oxidoreductase XC_0622 PF00892 EamA-like transporter family XC_0623 PF00497 Bacterial extracellular solute-binding proteins, family 3 XC_0625 PF03330 Lytic transglycolase XC_0626 PF01341 Glycosyl hydrolases family 6 XC_0626 PF00041 Fibronectin type III domain XC_0626 PF00553 Cellulose binding domain XC_0627 PF00324 Amino acid permease XC_0628 PF01544 CorA-like Mg2+ transporter protein XC_0631 PF01204 Trehalase XC_0633 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XC_0633 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XC_0637 PF00990 Diguanylate cyclase, GGDEF domain XC_0637 PF08448 PAS fold XC_0637 PF00563 EAL domain XC_0637 PF08447 PAS fold XC_0637 PF13426 PAS domain XC_0637 PF05231 MASE1 XC_0638 PF02203 Tar ligand binding domain homologue XC_0638 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_0638 PF00672 HAMP domain XC_0639 PF00150 Cellulase (glycosyl hydrolase family 5) XC_0639 PF00553 Cellulose binding domain XC_0640 PF01740 STAS domain XC_0640 PF00916 Sulfate permease family XC_0641 PF00990 Diguanylate cyclase, GGDEF domain XC_0641 PF08448 PAS fold XC_0642 PF07715 TonB-dependent Receptor Plug Domain XC_0642 PF07660 Secretin and TonB N terminus short domain XC_0642 PF00593 TonB dependent receptor XC_0644 PF02080 TrkA-C domain XC_0644 PF03600 Citrate transporter XC_0645 PF13632 Glycosyl transferase family group 2 XC_0647 PF06580 Histidine kinase XC_0647 PF07694 5TMR of 5TMR-LYT XC_0648 PF04397 LytTr DNA-binding domain XC_0648 PF00072 Response regulator receiver domain XC_0649 PF03900 Porphobilinogen deaminase, C-terminal domain XC_0649 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain XC_0654 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XC_0654 PF00326 Prolyl oligopeptidase family XC_0658 PF00155 Aminotransferase class I and II XC_0659 PF00326 Prolyl oligopeptidase family XC_0659 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XC_0660 PF04304 Protein of unknown function (DUF454) XC_0662 PF01678 Diaminopimelate epimerase XC_0664 PF00589 Phage integrase family XC_0664 PF02899 Phage integrase, N-terminal SAM-like domain XC_0665 PF13333 Integrase core domain XC_0665 PF13276 HTH-like domain XC_0665 PF00665 Integrase core domain XC_0666 PF01527 Transposase XC_0667 PF00227 Proteasome subunit XC_0668 PF10431 C-terminal, D2-small domain, of ClpB protein XC_0668 PF07724 AAA domain (Cdc48 subfamily) XC_0668 PF00004 ATPase family associated with various cellular activities (AAA) XC_0671 PF13673 Acetyltransferase (GNAT) domain XC_0672 PF13533 Biotin-lipoyl like XC_0673 PF01209 ubiE/COQ5 methyltransferase family XC_0675 PF03707 Bacterial signalling protein N terminal repeat XC_0675 PF00990 Diguanylate cyclase, GGDEF domain XC_0675 PF00563 EAL domain XC_0676 PF11838 ERAP1-like C-terminal domain XC_0676 PF01433 Peptidase family M1 domain XC_0679 PF13360 PQQ-like domain XC_0680 PF01527 Transposase XC_0681 PF13276 HTH-like domain XC_0681 PF00665 Integrase core domain XC_0681 PF13333 Integrase core domain XC_0682 PF13360 PQQ-like domain XC_0683 PF00497 Bacterial extracellular solute-binding proteins, family 3 XC_0686 PF00107 Zinc-binding dehydrogenase XC_0686 PF08240 Alcohol dehydrogenase GroES-like domain XC_0687 PF00593 TonB dependent receptor XC_0687 PF07660 Secretin and TonB N terminus short domain XC_0687 PF07715 TonB-dependent Receptor Plug Domain XC_0689 PF02954 Bacterial regulatory protein, Fis family XC_0689 PF00158 Sigma-54 interaction domain XC_0689 PF01590 GAF domain XC_0690 PF00294 pfkB family carbohydrate kinase XC_0692 PF04085 rod shape-determining protein MreC XC_0694 PF03717 Penicillin-binding Protein dimerisation domain XC_0694 PF00905 Penicillin binding protein transpeptidase domain XC_0695 PF01098 Cell cycle protein XC_0696 PF02534 Type IV secretory system Conjugative DNA transfer XC_0697 PF01527 Transposase XC_0698 PF13683 Integrase core domain XC_0698 PF13276 HTH-like domain XC_0699 PF02534 Type IV secretory system Conjugative DNA transfer XC_0702 PF05598 Transposase domain (DUF772) XC_0705 PF00295 Glycosyl hydrolases family 28 XC_0706 PF13406 Transglycosylase SLT domain XC_0707 PF05036 Sporulation related domain XC_0707 PF03330 Lytic transglycolase XC_0708 PF00768 D-alanyl-D-alanine carboxypeptidase XC_0708 PF07943 Penicillin-binding protein 5, C-terminal domain XC_0711 PF04359 Protein of unknown function (DUF493) XC_0712 PF03099 Biotin/lipoate A/B protein ligase family XC_0713 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family XC_0713 PF04055 Radical SAM superfamily XC_0714 PF03572 Peptidase family S41 XC_0714 PF17804 Tail specific protease N-terminal domain XC_0714 PF11818 C-terminal domain of tail specific protease (DUF3340) XC_0714 PF00595 PDZ domain XC_0716 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_0716 PF03466 LysR substrate binding domain XC_0718 PF01467 Cytidylyltransferase-like XC_0718 PF00293 NUDIX domain XC_0725 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain XC_0725 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XC_0726 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XC_0726 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XC_0727 PF04972 BON domain XC_0728 PF00512 His Kinase A (phospho-acceptor) domain XC_0728 PF08446 PAS fold XC_0728 PF01590 GAF domain XC_0728 PF00360 Phytochrome region XC_0728 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_0729 PF00072 Response regulator receiver domain XC_0730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_0730 PF00512 His Kinase A (phospho-acceptor) domain XC_0731 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XC_0739 PF03958 Bacterial type II/III secretion system short domain XC_0739 PF00263 Bacterial type II and III secretion system protein XC_0740 PF00437 Type II/IV secretion system protein XC_0741 PF00482 Type II secretion system (T2SS), protein F XC_0742 PF07963 Prokaryotic N-terminal methylation motif XC_0742 PF08334 Type II secretion system (T2SS), protein G XC_0744 PF02501 Type II secretion system (T2SS), protein I XC_0744 PF07963 Prokaryotic N-terminal methylation motif XC_0745 PF11612 Type II secretion system (T2SS), protein J XC_0745 PF07963 Prokaryotic N-terminal methylation motif XC_0746 PF03934 Type II secretion system (T2SS), protein K XC_0750 PF07702 UTRA domain XC_0750 PF00392 Bacterial regulatory proteins, gntR family XC_0751 PF07690 Major Facilitator Superfamily XC_0752 PF00356 Bacterial regulatory proteins, lacI family XC_0753 PF01380 SIS domain XC_0754 PF01979 Amidohydrolase family XC_0757 PF01743 Poly A polymerase head domain XC_0757 PF12627 Probable RNA and SrmB- binding site of polymerase A XC_0757 PF01966 HD domain XC_0758 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain XC_0758 PF01464 Transglycosylase SLT domain XC_0759 PF07715 TonB-dependent Receptor Plug Domain XC_0759 PF00593 TonB dependent receptor XC_0760 PF00732 GMC oxidoreductase XC_0760 PF05199 GMC oxidoreductase XC_0761 PF00171 Aldehyde dehydrogenase family XC_0762 PF02028 BCCT, betaine/carnitine/choline family transporter XC_0764 PF01323 DSBA-like thioredoxin domain XC_0766 PF00034 Cytochrome c XC_0767 PF01926 50S ribosome-binding GTPase XC_0768 PF04107 Glutamate-cysteine ligase family 2(GCS2) XC_0769 PF00512 His Kinase A (phospho-acceptor) domain XC_0769 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_0769 PF00672 HAMP domain XC_0770 PF00486 Transcriptional regulatory protein, C terminal XC_0770 PF00072 Response regulator receiver domain XC_0773 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_0773 PF03466 LysR substrate binding domain XC_0774 PF02583 Metal-sensitive transcriptional repressor XC_0775 PF08240 Alcohol dehydrogenase GroES-like domain XC_0775 PF00107 Zinc-binding dehydrogenase XC_0776 PF04828 Glutathione-dependent formaldehyde-activating enzyme XC_0777 PF00756 Putative esterase XC_0778 PF00392 Bacterial regulatory proteins, gntR family XC_0778 PF00155 Aminotransferase class I and II XC_0779 PF02567 Phenazine biosynthesis-like protein XC_0780 PF00892 EamA-like transporter family XC_0782 PF02645 Uncharacterised protein, DegV family COG1307 XC_0792 PF01979 Amidohydrolase family XC_0793 PF01979 Amidohydrolase family XC_0796 PF00462 Glutaredoxin XC_0797 PF01522 Polysaccharide deacetylase XC_0800 PF00155 Aminotransferase class I and II XC_0802 PF03193 RsgA GTPase XC_0805 PF00128 Alpha amylase, catalytic domain XC_0808 PF00356 Bacterial regulatory proteins, lacI family XC_0809 PF00106 short chain dehydrogenase XC_0810 PF03600 Citrate transporter XC_0812 PF00486 Transcriptional regulatory protein, C terminal XC_0812 PF00072 Response regulator receiver domain XC_0813 PF00512 His Kinase A (phospho-acceptor) domain XC_0813 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_0813 PF08521 Two-component sensor kinase N-terminal XC_0816 PF00196 Bacterial regulatory proteins, luxR family XC_0816 PF00072 Response regulator receiver domain XC_0818 PF00512 His Kinase A (phospho-acceptor) domain XC_0818 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_0820 PF00375 Sodium:dicarboxylate symporter family XC_0821 PF00390 Malic enzyme, N-terminal domain XC_0821 PF03949 Malic enzyme, NAD binding domain XC_0821 PF01515 Phosphate acetyl/butaryl transferase XC_0826 PF03279 Bacterial lipid A biosynthesis acyltransferase XC_0827 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) XC_0828 PF02321 Outer membrane efflux protein XC_0831 PF13188 PAS domain XC_0831 PF03707 Bacterial signalling protein N terminal repeat XC_0831 PF00990 Diguanylate cyclase, GGDEF domain XC_0831 PF00563 EAL domain XC_0832 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_0833 PF00330 Aconitase family (aconitate hydratase) XC_0834 PF00694 Aconitase C-terminal domain XC_0835 PF08241 Methyltransferase domain XC_0836 PF00180 Isocitrate/isopropylmalate dehydrogenase XC_0837 PF00682 HMGL-like XC_0837 PF08502 LeuA allosteric (dimerisation) domain XC_0838 PF00291 Pyridoxal-phosphate dependent enzyme XC_0840 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XC_0840 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XC_0840 PF00205 Thiamine pyrophosphate enzyme, central domain XC_0841 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain XC_0841 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain XC_0843 PF00672 HAMP domain XC_0843 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_0843 PF02203 Tar ligand binding domain homologue XC_0844 PF00326 Prolyl oligopeptidase family XC_0844 PF07676 WD40-like Beta Propeller Repeat XC_0846 PF01964 Radical SAM ThiC family XC_0846 PF13667 ThiC-associated domain XC_0847 PF18500 CadC C-terminal domain 1 XC_0847 PF00486 Transcriptional regulatory protein, C terminal XC_0848 PF12833 Helix-turn-helix domain XC_0849 PF00593 TonB dependent receptor XC_0849 PF07715 TonB-dependent Receptor Plug Domain XC_0851 PF00719 Inorganic pyrophosphatase XC_0853 PF03030 Inorganic H+ pyrophosphatase XC_0858 PF13683 Integrase core domain XC_0858 PF13276 HTH-like domain XC_0859 PF01527 Transposase XC_0862 PF01609 Transposase DDE domain XC_0862 PF05598 Transposase domain (DUF772) XC_0864 PF04610 TrbL/VirB6 plasmid conjugal transfer protein XC_0868 PF04610 TrbL/VirB6 plasmid conjugal transfer protein XC_0869 PF05598 Transposase domain (DUF772) XC_0872 PF00365 Phosphofructokinase XC_0874 PF01225 Mur ligase family, catalytic domain XC_0874 PF02875 Mur ligase family, glutamate ligase domain XC_0874 PF08245 Mur ligase middle domain XC_0876 PF01062 Bestrophin, RFP-TM, chloride channel XC_0877 PF01569 PAP2 superfamily XC_0881 PF00520 Ion transport protein XC_0881 PF00027 Cyclic nucleotide-binding domain XC_0882 PF00202 Aminotransferase class-III XC_0886 PF01593 Flavin containing amine oxidoreductase XC_0887 PF00034 Cytochrome c XC_0887 PF13442 Cytochrome C oxidase, cbb3-type, subunit III XC_0889 PF00155 Aminotransferase class I and II XC_0890 PF00127 Copper binding proteins, plastocyanin/azurin family XC_0891 PF17874 MalT-like TPR region XC_0891 PF00196 Bacterial regulatory proteins, luxR family XC_0892 PF00202 Aminotransferase class-III XC_0895 PF02581 Thiamine monophosphate synthase XC_0896 PF00301 Rubredoxin XC_0897 PF13369 Transglutaminase-like superfamily XC_0899 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) XC_0901 PF01812 5-formyltetrahydrofolate cyclo-ligase family XC_0902 PF05164 Cell division protein ZapA XC_0904 PF03695 Uncharacterised protein family (UPF0149) XC_0905 PF05195 Aminopeptidase P, N-terminal domain XC_0905 PF00557 Metallopeptidase family M24 XC_0907 PF04273 Putative phosphatase (DUF442) XC_0907 PF00753 Metallo-beta-lactamase superfamily XC_0911 PF00528 Binding-protein-dependent transport system inner membrane component XC_0912 PF00005 ABC transporter XC_0912 PF03459 TOBE domain XC_0916 PF03965 Penicillinase repressor XC_0920 PF01476 LysM domain XC_0920 PF03734 L,D-transpeptidase catalytic domain XC_0921 PF04225 Opacity-associated protein A LysM-like domain XC_0921 PF01551 Peptidase family M23 XC_0923 PF03466 LysR substrate binding domain XC_0923 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_0924 PF07715 TonB-dependent Receptor Plug Domain XC_0924 PF00593 TonB dependent receptor XC_0925 PF07715 TonB-dependent Receptor Plug Domain XC_0925 PF00593 TonB dependent receptor XC_0926 PF01527 Transposase XC_0927 PF13683 Integrase core domain XC_0927 PF13276 HTH-like domain XC_0928 PF12146 Serine aminopeptidase, S33 XC_0929 PF02780 Transketolase, C-terminal domain XC_0929 PF02779 Transketolase, pyrimidine binding domain XC_0929 PF00456 Transketolase, thiamine diphosphate binding domain XC_0930 PF00375 Sodium:dicarboxylate symporter family XC_0932 PF07584 Aerotolerance regulator N-terminal XC_0932 PF00092 von Willebrand factor type A domain XC_0936 PF17863 AAA lid domain XC_0936 PF07726 ATPase family associated with various cellular activities (AAA) XC_0937 PF07660 Secretin and TonB N terminus short domain XC_0937 PF03958 Bacterial type II/III secretion system short domain XC_0937 PF00263 Bacterial type II and III secretion system protein XC_0937 PF11741 AMIN domain XC_0942 PF17092 Penicillin-binding protein OB-like domain XC_0942 PF00905 Penicillin binding protein transpeptidase domain XC_0942 PF00912 Transglycosylase XC_0944 PF00285 Citrate synthase, C-terminal domain XC_0945 PF01197 Ribosomal protein L31 XC_0946 PF01156 Inosine-uridine preferring nucleoside hydrolase XC_0947 PF00270 DEAD/DEAH box helicase XC_0947 PF00271 Helicase conserved C-terminal domain XC_0947 PF17191 RecG wedge domain XC_0948 PF01042 Endoribonuclease L-PSP XC_0949 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus XC_0949 PF08666 SAF domain XC_0950 PF03573 outer membrane porin, OprD family XC_0951 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XC_0951 PF13378 Enolase C-terminal domain-like XC_0952 PF07690 Major Facilitator Superfamily XC_0953 PF00171 Aldehyde dehydrogenase family XC_0954 PF00701 Dihydrodipicolinate synthetase family XC_0955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_0955 PF03466 LysR substrate binding domain XC_0956 PF04607 Region found in RelA / SpoT proteins XC_0956 PF13291 ACT domain XC_0956 PF02824 TGS domain XC_0957 PF01192 RNA polymerase Rpb6 XC_0958 PF00625 Guanylate kinase XC_0959 PF03755 YicC-like family, N-terminal region XC_0959 PF08340 Domain of unknown function (DUF1732) XC_0960 PF01138 3' exoribonuclease family, domain 1 XC_0960 PF03725 3' exoribonuclease family, domain 2 XC_0961 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XC_0962 PF01725 Ham1 family XC_0963 PF06969 HemN C-terminal domain XC_0963 PF04055 Radical SAM superfamily XC_0966 PF00557 Metallopeptidase family M24 XC_0969 PF03922 OmpW family XC_0972 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XC_0972 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain XC_0976 PF00162 Phosphoglycerate kinase XC_0978 PF00224 Pyruvate kinase, barrel domain XC_0978 PF02887 Pyruvate kinase, alpha/beta domain XC_0979 PF00274 Fructose-bisphosphate aldolase class-I XC_0980 PF01661 Macro domain XC_0982 PF00291 Pyridoxal-phosphate dependent enzyme XC_0983 PF10414 Sirohaem synthase dimerisation region XC_0983 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XC_0983 PF14824 Sirohaem biosynthesis protein central XC_0984 PF03466 LysR substrate binding domain XC_0984 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_0987 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_0987 PF00512 His Kinase A (phospho-acceptor) domain XC_0987 PF00072 Response regulator receiver domain XC_0987 PF00672 HAMP domain XC_0987 PF01627 Hpt domain XC_0990 PF01507 Phosphoadenosine phosphosulfate reductase family XC_0991 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XC_0991 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XC_0992 PF00667 FAD binding domain XC_0992 PF00258 Flavodoxin XC_0992 PF00175 Oxidoreductase NAD-binding domain XC_0993 PF01507 Phosphoadenosine phosphosulfate reductase family XC_0994 PF00009 Elongation factor Tu GTP binding domain XC_0995 PF00529 HlyD membrane-fusion protein of T1SS XC_0995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XC_0996 PF00873 AcrB/AcrD/AcrF family XC_0997 PF01433 Peptidase family M1 domain XC_0997 PF11838 ERAP1-like C-terminal domain XC_0999 PF01235 Sodium:alanine symporter family XC_1000 PF08032 RNA 2'-O ribose methyltransferase substrate binding XC_1000 PF00588 SpoU rRNA Methylase family XC_1001 PF00135 Carboxylesterase family XC_1002 PF14508 Glycosyl-hydrolase 97 N-terminal XC_1002 PF10566 Glycoside hydrolase 97 XC_1002 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation XC_1003 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XC_1003 PF02837 Glycosyl hydrolases family 2, sugar binding domain XC_1003 PF02929 Beta galactosidase small chain XC_1003 PF00703 Glycosyl hydrolases family 2 XC_1003 PF16353 Domain of unknown function(DUF4981) XC_1005 PF01341 Glycosyl hydrolases family 6 XC_1005 PF00041 Fibronectin type III domain XC_1005 PF00553 Cellulose binding domain XC_1006 PF00356 Bacterial regulatory proteins, lacI family XC_1009 PF01741 Large-conductance mechanosensitive channel, MscL XC_1010 PF01557 Fumarylacetoacetate (FAA) hydrolase family XC_1013 PF02080 TrkA-C domain XC_1013 PF03600 Citrate transporter XC_1014 PF02390 Putative methyltransferase XC_1015 PF05690 Thiazole biosynthesis protein ThiG XC_1017 PF00657 GDSL-like Lipase/Acylhydrolase XC_1017 PF03797 Autotransporter beta-domain XC_1018 PF14659 Phage integrase, N-terminal SAM-like domain XC_1018 PF00589 Phage integrase family XC_1018 PF13356 Arm DNA-binding domain XC_1021 PF01381 Helix-turn-helix XC_1022 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_1022 PF03466 LysR substrate binding domain XC_1024 PF13683 Integrase core domain XC_1024 PF13276 HTH-like domain XC_1025 PF13276 HTH-like domain XC_1025 PF13683 Integrase core domain XC_1026 PF01527 Transposase XC_1031 PF13683 Integrase core domain XC_1031 PF13276 HTH-like domain XC_1032 PF13683 Integrase core domain XC_1032 PF13276 HTH-like domain XC_1033 PF13276 HTH-like domain XC_1033 PF13683 Integrase core domain XC_1034 PF01527 Transposase XC_1036 PF00990 Diguanylate cyclase, GGDEF domain XC_1036 PF08448 PAS fold XC_1036 PF08447 PAS fold XC_1036 PF00563 EAL domain XC_1043 PF13333 Integrase core domain XC_1043 PF13276 HTH-like domain XC_1043 PF00665 Integrase core domain XC_1047 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XC_1047 PF00128 Alpha amylase, catalytic domain XC_1048 PF18030 RimK PreATP-grasp domain XC_1048 PF08443 RimK-like ATP-grasp domain XC_1049 PF00072 Response regulator receiver domain XC_1049 PF00486 Transcriptional regulatory protein, C terminal XC_1050 PF11808 Phosphate regulon sensor protein PhoR XC_1050 PF00512 His Kinase A (phospho-acceptor) domain XC_1050 PF00989 PAS fold XC_1050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_1054 PF05598 Transposase domain (DUF772) XC_1055 PF01121 Dephospho-CoA kinase XC_1056 PF06750 Bacterial Peptidase A24 N-terminal domain XC_1056 PF01478 Type IV leader peptidase family XC_1057 PF00482 Type II secretion system (T2SS), protein F XC_1058 PF00114 Pilin (bacterial filament) XC_1058 PF07963 Prokaryotic N-terminal methylation motif XC_1059 PF00114 Pilin (bacterial filament) XC_1059 PF07963 Prokaryotic N-terminal methylation motif XC_1060 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XC_1060 PF00437 Type II/IV secretion system protein XC_1061 PF00158 Sigma-54 interaction domain XC_1061 PF00072 Response regulator receiver domain XC_1061 PF02954 Bacterial regulatory protein, Fis family XC_1062 PF00512 His Kinase A (phospho-acceptor) domain XC_1062 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_1063 PF08442 ATP-grasp domain XC_1063 PF00549 CoA-ligase XC_1064 PF00549 CoA-ligase XC_1064 PF02629 CoA binding domain XC_1067 PF00795 Carbon-nitrogen hydrolase XC_1067 PF02540 NAD synthase XC_1069 PF13525 Outer membrane lipoprotein XC_1070 PF00849 RNA pseudouridylate synthase XC_1074 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_1074 PF02203 Tar ligand binding domain homologue XC_1074 PF00672 HAMP domain XC_1075 PF01011 PQQ enzyme repeat XC_1076 PF00982 Glycosyltransferase family 20 XC_1077 PF00723 Glycosyl hydrolases family 15 XC_1078 PF02358 Trehalose-phosphatase XC_1079 PF07715 TonB-dependent Receptor Plug Domain XC_1079 PF00593 TonB dependent receptor XC_1086 PF01541 GIY-YIG catalytic domain XC_1087 PF00005 ABC transporter XC_1088 PF02861 Clp amino terminal domain, pathogenicity island component XC_1088 PF07724 AAA domain (Cdc48 subfamily) XC_1088 PF17871 AAA lid domain XC_1088 PF00004 ATPase family associated with various cellular activities (AAA) XC_1088 PF10431 C-terminal, D2-small domain, of ClpB protein XC_1090 PF01053 Cys/Met metabolism PLP-dependent enzyme XC_1091 PF00593 TonB dependent receptor XC_1091 PF07715 TonB-dependent Receptor Plug Domain XC_1094 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP XC_1094 PF12557 Cob(I)alamin adenosyltransferase N terminal XC_1095 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XC_1095 PF07685 CobB/CobQ-like glutamine amidotransferase domain XC_1096 PF03186 CobD/Cbib protein XC_1096 PF17113 Regulatory signalling modulator protein AmpE XC_1097 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XC_1097 PF07685 CobB/CobQ-like glutamine amidotransferase domain XC_1098 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase XC_1099 PF02277 Phosphoribosyltransferase XC_1101 PF02654 Cobalamin-5-phosphate synthase XC_1103 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain XC_1103 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XC_1104 PF04183 IucA / IucC family XC_1104 PF06276 Ferric iron reductase FhuF-like transporter XC_1105 PF07690 Major Facilitator Superfamily XC_1106 PF06276 Ferric iron reductase FhuF-like transporter XC_1106 PF04183 IucA / IucC family XC_1108 PF00593 TonB dependent receptor XC_1108 PF07715 TonB-dependent Receptor Plug Domain XC_1108 PF07660 Secretin and TonB N terminus short domain XC_1110 PF02254 TrkA-N domain XC_1110 PF00999 Sodium/hydrogen exchanger family XC_1111 PF00067 Cytochrome P450 XC_1112 PF00593 TonB dependent receptor XC_1112 PF07715 TonB-dependent Receptor Plug Domain XC_1113 PF07715 TonB-dependent Receptor Plug Domain XC_1113 PF00593 TonB dependent receptor XC_1115 PF07715 TonB-dependent Receptor Plug Domain XC_1115 PF00593 TonB dependent receptor XC_1116 PF00005 ABC transporter XC_1116 PF12848 ABC transporter XC_1118 PF03466 LysR substrate binding domain XC_1118 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_1120 PF13472 GDSL-like Lipase/Acylhydrolase family XC_1120 PF07859 alpha/beta hydrolase fold XC_1121 PF05506 Domain of unknown function (DUF756) XC_1121 PF04185 Phosphoesterase family XC_1123 PF05116 Sucrose-6F-phosphate phosphohydrolase XC_1123 PF00982 Glycosyltransferase family 20 XC_1124 PF07690 Major Facilitator Superfamily XC_1128 PF01336 OB-fold nucleic acid binding domain XC_1128 PF02938 GAD domain XC_1128 PF00152 tRNA synthetases class II (D, K and N) XC_1131 PF01709 Transcriptional regulator XC_1132 PF02075 Crossover junction endodeoxyribonuclease RuvC XC_1133 PF07499 RuvA, C-terminal domain XC_1133 PF01330 RuvA N terminal domain XC_1134 PF02705 K+ potassium transporter XC_1136 PF17864 RuvB AAA lid domain XC_1136 PF05496 Holliday junction DNA helicase RuvB P-loop domain XC_1136 PF05491 RuvB C-terminal winged helix domain XC_1137 PF03061 Thioesterase superfamily XC_1138 PF01618 MotA/TolQ/ExbB proton channel family XC_1139 PF02472 Biopolymer transport protein ExbD/TolR XC_1141 PF07676 WD40-like Beta Propeller Repeat XC_1141 PF04052 TolB amino-terminal domain XC_1142 PF00691 OmpA family XC_1144 PF04055 Radical SAM superfamily XC_1145 PF06508 Queuosine biosynthesis protein QueC XC_1152 PF00654 Voltage gated chloride channel XC_1153 PF03466 LysR substrate binding domain XC_1153 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_1158 PF01479 S4 domain XC_1158 PF00849 RNA pseudouridylate synthase XC_1162 PF00570 HRDC domain XC_1162 PF00270 DEAD/DEAH box helicase XC_1162 PF09382 RQC domain XC_1162 PF00271 Helicase conserved C-terminal domain XC_1162 PF16124 RecQ zinc-binding XC_1163 PF00210 Ferritin-like domain XC_1164 PF11898 Domain of unknown function (DUF3418) XC_1164 PF00270 DEAD/DEAH box helicase XC_1164 PF04408 Helicase associated domain (HA2) XC_1164 PF00271 Helicase conserved C-terminal domain XC_1164 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold XC_1166 PF02685 Glucokinase XC_1169 PF04055 Radical SAM superfamily XC_1169 PF13186 Iron-sulfur cluster-binding domain XC_1170 PF05402 Coenzyme PQQ synthesis protein D (PqqD) XC_1171 PF03070 TENA/THI-4/PQQC family XC_1172 PF12706 Beta-lactamase superfamily domain XC_1173 PF04607 Region found in RelA / SpoT proteins XC_1173 PF13291 ACT domain XC_1173 PF02824 TGS domain XC_1175 PF00535 Glycosyl transferase family 2 XC_1176 PF00905 Penicillin binding protein transpeptidase domain XC_1176 PF14814 Bifunctional transglycosylase second domain XC_1176 PF00912 Transglycosylase XC_1178 PF04851 Type III restriction enzyme, res subunit XC_1178 PF13307 Helicase C-terminal domain XC_1179 PF00814 Glycoprotease family XC_1180 PF03747 ADP-ribosylglycohydrolase XC_1182 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain XC_1182 PF02951 Prokaryotic glutathione synthetase, N-terminal domain XC_1183 PF00072 Response regulator receiver domain XC_1184 PF00072 Response regulator receiver domain XC_1185 PF01584 CheW-like domain XC_1186 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term XC_1186 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_1187 PF01584 CheW-like domain XC_1187 PF01627 Hpt domain XC_1187 PF00072 Response regulator receiver domain XC_1187 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_1191 PF13302 Acetyltransferase (GNAT) domain XC_1193 PF04542 Sigma-70 region 2 XC_1193 PF08281 Sigma-70, region 4 XC_1194 PF12450 von Willebrand factor XC_1194 PF00092 von Willebrand factor type A domain XC_1194 PF12034 Domain of unknown function (DUF3520) XC_1195 PF01112 Asparaginase XC_1196 PF03932 CutC family XC_1197 PF00067 Cytochrome P450 XC_1204 PF18766 SWI2/SNF2 ATPase XC_1204 PF11867 Domain of unknown function (DUF3387) XC_1204 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) XC_1207 PF02384 N-6 DNA Methylase XC_1207 PF12161 HsdM N-terminal domain XC_1211 PF01527 Transposase XC_1212 PF13276 HTH-like domain XC_1212 PF13333 Integrase core domain XC_1212 PF00665 Integrase core domain XC_1214 PF01301 Glycosyl hydrolases family 35 XC_1215 PF17678 Glycosyl hydrolase family 92 N-terminal domain XC_1215 PF07971 Glycosyl hydrolase family 92 XC_1217 PF14310 Fibronectin type III-like domain XC_1217 PF00933 Glycosyl hydrolase family 3 N terminal domain XC_1217 PF07691 PA14 domain XC_1217 PF01915 Glycosyl hydrolase family 3 C-terminal domain XC_1219 PF00728 Glycosyl hydrolase family 20, catalytic domain XC_1219 PF02838 Glycosyl hydrolase family 20, domain 2 XC_1219 PF07691 PA14 domain XC_1220 PF01476 LysM domain XC_1220 PF00704 Glycosyl hydrolases family 18 XC_1223 PF02685 Glucokinase XC_1224 PF04452 RNA methyltransferase XC_1225 PF00202 Aminotransferase class-III XC_1226 PF00293 NUDIX domain XC_1227 PF00459 Inositol monophosphatase family XC_1228 PF03819 MazG nucleotide pyrophosphohydrolase domain XC_1229 PF02694 Uncharacterised BCR, YnfA/UPF0060 family XC_1230 PF01145 SPFH domain / Band 7 family XC_1230 PF16200 C-terminal region of band_7 XC_1232 PF01571 Aminomethyltransferase folate-binding domain XC_1232 PF08669 Glycine cleavage T-protein C-terminal barrel domain XC_1233 PF01597 Glycine cleavage H-protein XC_1238 PF09317 Domain of unknown function (DUF1974) XC_1238 PF02770 Acyl-CoA dehydrogenase, middle domain XC_1238 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XC_1238 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XC_1240 PF00440 Bacterial regulatory proteins, tetR family XC_1241 PF00593 TonB dependent receptor XC_1241 PF07715 TonB-dependent Receptor Plug Domain XC_1243 PF01430 Hsp33 protein XC_1244 PF00912 Transglycosylase XC_1245 PF00535 Glycosyl transferase family 2 XC_1246 PF00571 CBS domain XC_1246 PF00478 IMP dehydrogenase / GMP reductase domain XC_1247 PF05170 AsmA family XC_1248 PF03006 Haemolysin-III related XC_1249 PF16658 Class II release factor RF3, C-terminal domain XC_1249 PF00009 Elongation factor Tu GTP binding domain XC_1250 PF01551 Peptidase family M23 XC_1250 PF08460 Bacterial SH3 domain XC_1251 PF00561 alpha/beta hydrolase fold XC_1252 PF01053 Cys/Met metabolism PLP-dependent enzyme XC_1253 PF03447 Homoserine dehydrogenase, NAD binding domain XC_1253 PF00742 Homoserine dehydrogenase XC_1253 PF00696 Amino acid kinase family XC_1254 PF12697 Alpha/beta hydrolase family XC_1255 PF03315 Serine dehydratase beta chain XC_1255 PF03313 Serine dehydratase alpha chain XC_1259 PF04264 YceI-like domain XC_1260 PF01627 Hpt domain XC_1260 PF00512 His Kinase A (phospho-acceptor) domain XC_1260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_1260 PF00672 HAMP domain XC_1260 PF17149 Periplasmic sensor domain found in signal transduction proteins XC_1260 PF00072 Response regulator receiver domain XC_1261 PF01627 Hpt domain XC_1261 PF00672 HAMP domain XC_1261 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_1261 PF17149 Periplasmic sensor domain found in signal transduction proteins XC_1261 PF00512 His Kinase A (phospho-acceptor) domain XC_1261 PF00072 Response regulator receiver domain XC_1262 PF00072 Response regulator receiver domain XC_1262 PF01627 Hpt domain XC_1262 PF00512 His Kinase A (phospho-acceptor) domain XC_1262 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_1262 PF00672 HAMP domain XC_1262 PF17149 Periplasmic sensor domain found in signal transduction proteins XC_1263 PF07690 Major Facilitator Superfamily XC_1265 PF01208 Uroporphyrinogen decarboxylase (URO-D) XC_1267 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region XC_1267 PF01243 Pyridoxamine 5'-phosphate oxidase XC_1268 PF01761 3-dehydroquinate synthase XC_1269 PF01202 Shikimate kinase XC_1270 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region XC_1270 PF01243 Pyridoxamine 5'-phosphate oxidase XC_1272 PF04012 PspA/IM30 family XC_1277 PF03738 Glutathionylspermidine synthase preATP-grasp XC_1279 PF07690 Major Facilitator Superfamily XC_1280 PF09278 MerR, DNA binding XC_1280 PF00376 MerR family regulatory protein XC_1290 PF00072 Response regulator receiver domain XC_1290 PF01339 CheB methylesterase XC_1293 PF00324 Amino acid permease XC_1295 PF00196 Bacterial regulatory proteins, luxR family XC_1296 PF00561 alpha/beta hydrolase fold XC_1298 PF00544 Pectate lyase XC_1299 PF00324 Amino acid permease XC_1300 PF01654 Cytochrome bd terminal oxidase subunit I XC_1301 PF02322 Cytochrome bd terminal oxidase subunit II XC_1303 PF00571 CBS domain XC_1303 PF03448 MgtE intracellular N domain XC_1303 PF01769 Divalent cation transporter XC_1304 PF02896 PEP-utilising enzyme, TIM barrel domain XC_1304 PF05524 PEP-utilising enzyme, N-terminal XC_1304 PF00391 PEP-utilising enzyme, mobile domain XC_1305 PF00381 PTS HPr component phosphorylation site XC_1307 PF03668 P-loop ATPase protein family XC_1308 PF07475 HPr Serine kinase C-terminal domain XC_1308 PF02603 HPr Serine kinase N terminus XC_1309 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XC_1310 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein XC_1311 PF04552 Sigma-54, DNA binding domain XC_1311 PF04963 Sigma-54 factor, core binding domain XC_1311 PF00309 Sigma-54 factor, Activator interacting domain (AID) XC_1312 PF00005 ABC transporter XC_1316 PF01380 SIS domain XC_1316 PF00571 CBS domain XC_1317 PF01722 BolA-like protein XC_1318 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XC_1322 PF00551 Formyl transferase XC_1324 PF02769 AIR synthase related protein, C-terminal domain XC_1324 PF00586 AIR synthase related protein, N-terminal domain XC_1326 PF01594 AI-2E family transporter XC_1327 PF00308 Bacterial dnaA protein XC_1328 PF00483 Nucleotidyl transferase XC_1329 PF01636 Phosphotransferase enzyme family XC_1331 PF07687 Peptidase dimerisation domain XC_1331 PF01546 Peptidase family M20/M25/M40 XC_1334 PF00667 FAD binding domain XC_1334 PF00175 Oxidoreductase NAD-binding domain XC_1334 PF00258 Flavodoxin XC_1335 PF02424 ApbE family XC_1340 PF13640 2OG-Fe(II) oxygenase superfamily XC_1340 PF18331 PKHD-type hydroxylase C-terminal domain XC_1341 PF07715 TonB-dependent Receptor Plug Domain XC_1341 PF00593 TonB dependent receptor XC_1342 PF00355 Rieske [2Fe-2S] domain XC_1344 PF00266 Aminotransferase class-V XC_1345 PF01458 Uncharacterized protein family (UPF0051) XC_1346 PF00005 ABC transporter XC_1347 PF01458 Uncharacterized protein family (UPF0051) XC_1350 PF01965 DJ-1/PfpI family XC_1356 PF03807 NADP oxidoreductase coenzyme F420-dependent XC_1356 PF14748 Pyrroline-5-carboxylate reductase dimerisation XC_1357 PF01168 Alanine racemase, N-terminal domain XC_1358 PF00437 Type II/IV secretion system protein XC_1359 PF00437 Type II/IV secretion system protein XC_1363 PF00117 Glutamine amidotransferase class-I XC_1363 PF00958 GMP synthase C terminal domain XC_1363 PF03352 Methyladenine glycosylase XC_1363 PF13302 Acetyltransferase (GNAT) domain XC_1363 PF13673 Acetyltransferase (GNAT) domain XC_1364 PF13687 Domain of unknown function (DUF4153) XC_1365 PF02622 Uncharacterized ACR, COG1678 XC_1366 PF03652 Holliday junction resolvase XC_1367 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XC_1367 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XC_1368 PF02566 OsmC-like protein XC_1370 PF02567 Phenazine biosynthesis-like protein XC_1371 PF02567 Phenazine biosynthesis-like protein XC_1372 PF01842 ACT domain XC_1372 PF00696 Amino acid kinase family XC_1375 PF08245 Mur ligase middle domain XC_1377 PF00348 Polyprenyl synthetase XC_1378 PF00436 Single-strand binding protein family XC_1380 PF07728 AAA domain (dynein-related subfamily) XC_1380 PF12102 Domain of unknown function (DUF3578) XC_1383 PF00360 Phytochrome region XC_1383 PF00990 Diguanylate cyclase, GGDEF domain XC_1383 PF00563 EAL domain XC_1383 PF01590 GAF domain XC_1384 PF08240 Alcohol dehydrogenase GroES-like domain XC_1384 PF00107 Zinc-binding dehydrogenase XC_1385 PF01799 [2Fe-2S] binding domain XC_1385 PF00111 2Fe-2S iron-sulfur cluster binding domain XC_1385 PF10518 TAT (twin-arginine translocation) pathway signal sequence XC_1386 PF00941 FAD binding domain in molybdopterin dehydrogenase XC_1386 PF03450 CO dehydrogenase flavoprotein C-terminal domain XC_1387 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XC_1387 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XC_1388 PF02625 XdhC and CoxI family XC_1388 PF13478 XdhC Rossmann domain XC_1389 PF12804 MobA-like NTP transferase domain XC_1397 PF04328 Selenoprotein, putative XC_1398 PF02554 Carbon starvation protein CstA XC_1398 PF13722 5TM C-terminal transporter carbon starvation CstA XC_1399 PF05726 Pirin C-terminal cupin domain XC_1399 PF02678 Pirin XC_1402 PF02678 Pirin XC_1402 PF05726 Pirin C-terminal cupin domain XC_1403 PF04493 Endonuclease V XC_1404 PF00300 Histidine phosphatase superfamily (branch 1) XC_1406 PF01431 Peptidase family M13 XC_1406 PF05649 Peptidase family M13 XC_1407 PF01609 Transposase DDE domain XC_1407 PF05598 Transposase domain (DUF772) XC_1408 PF13091 PLD-like domain XC_1409 PF01339 CheB methylesterase XC_1409 PF00072 Response regulator receiver domain XC_1410 PF01739 CheR methyltransferase, SAM binding domain XC_1410 PF03705 CheR methyltransferase, all-alpha domain XC_1411 PF13426 PAS domain XC_1411 PF00990 Diguanylate cyclase, GGDEF domain XC_1411 PF00563 EAL domain XC_1412 PF01584 CheW-like domain XC_1413 PF02203 Tar ligand binding domain homologue XC_1413 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_1413 PF00672 HAMP domain XC_1414 PF09078 CheY binding XC_1414 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_1414 PF01584 CheW-like domain XC_1414 PF01627 Hpt domain XC_1414 PF02895 Signal transducing histidine kinase, homodimeric domain XC_1416 PF00270 DEAD/DEAH box helicase XC_1416 PF00271 Helicase conserved C-terminal domain XC_1416 PF03461 TRCF domain XC_1416 PF17757 UvrB interaction domain XC_1416 PF02559 CarD-like/TRCF domain XC_1418 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ XC_1419 PF00072 Response regulator receiver domain XC_1419 PF00486 Transcriptional regulatory protein, C terminal XC_1421 PF00672 HAMP domain XC_1421 PF00512 His Kinase A (phospho-acceptor) domain XC_1421 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_1423 PF06123 Inner membrane protein CreD XC_1429 PF00749 tRNA synthetases class I (E and Q), catalytic domain XC_1430 PF01475 Ferric uptake regulator family XC_1432 PF00529 HlyD membrane-fusion protein of T1SS XC_1432 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XC_1433 PF00873 AcrB/AcrD/AcrF family XC_1434 PF02321 Outer membrane efflux protein XC_1435 PF00440 Bacterial regulatory proteins, tetR family XC_1435 PF16859 Tetracyclin repressor-like, C-terminal domain XC_1436 PF00248 Aldo/keto reductase family XC_1437 PF03466 LysR substrate binding domain XC_1437 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_1439 PF12833 Helix-turn-helix domain XC_1439 PF06719 AraC-type transcriptional regulator N-terminus XC_1442 PF00082 Subtilase family XC_1442 PF01483 Proprotein convertase P-domain XC_1443 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_1443 PF03466 LysR substrate binding domain XC_1444 PF07690 Major Facilitator Superfamily XC_1445 PF00248 Aldo/keto reductase family XC_1450 PF00082 Subtilase family XC_1450 PF02225 PA domain XC_1450 PF05922 Peptidase inhibitor I9 XC_1450 PF13860 FlgD Ig-like domain XC_1452 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XC_1452 PF00384 Molybdopterin oxidoreductase XC_1452 PF04879 Molybdopterin oxidoreductase Fe4S4 domain XC_1452 PF01568 Molydopterin dinucleotide binding domain XC_1452 PF12838 4Fe-4S dicluster domain XC_1454 PF01654 Cytochrome bd terminal oxidase subunit I XC_1455 PF02322 Cytochrome bd terminal oxidase subunit II XC_1459 PF00593 TonB dependent receptor XC_1459 PF07715 TonB-dependent Receptor Plug Domain XC_1462 PF00654 Voltage gated chloride channel XC_1464 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain XC_1464 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain XC_1470 PF01494 FAD binding domain XC_1475 PF00270 DEAD/DEAH box helicase XC_1475 PF03880 DbpA RNA binding domain XC_1475 PF00271 Helicase conserved C-terminal domain XC_1476 PF00990 Diguanylate cyclase, GGDEF domain XC_1476 PF08448 PAS fold XC_1476 PF00563 EAL domain XC_1477 PF01479 S4 domain XC_1477 PF00849 RNA pseudouridylate synthase XC_1478 PF05598 Transposase domain (DUF772) XC_1480 PF03737 Aldolase/RraA XC_1481 PF00144 Beta-lactamase XC_1483 PF00999 Sodium/hydrogen exchanger family XC_1484 PF00005 ABC transporter XC_1484 PF00664 ABC transporter transmembrane region XC_1489 PF01022 Bacterial regulatory protein, arsR family XC_1490 PF03466 LysR substrate binding domain XC_1490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_1493 PF04070 Domain of unknown function (DUF378) XC_1495 PF00085 Thioredoxin XC_1497 PF00133 tRNA synthetases class I (I, L, M and V) XC_1497 PF08264 Anticodon-binding domain of tRNA XC_1497 PF13603 Leucyl-tRNA synthetase, Domain 2 XC_1500 PF01467 Cytidylyltransferase-like XC_1503 PF02590 Predicted SPOUT methyltransferase XC_1505 PF04402 Protein of unknown function (DUF541) XC_1506 PF02545 Maf-like protein XC_1507 PF10150 Ribonuclease E/G family XC_1507 PF00575 S1 RNA binding domain XC_1508 PF13502 AsmA-like C-terminal region XC_1508 PF13116 Protein of unknown function XC_1510 PF01523 Putative modulator of DNA gyrase XC_1511 PF04751 Protein of unknown function (DUF615) XC_1512 PF01523 Putative modulator of DNA gyrase XC_1514 PF14521 Lysine-specific metallo-endopeptidase XC_1516 PF00348 Polyprenyl synthetase XC_1517 PF02609 Exonuclease VII small subunit XC_1518 PF09179 TilS substrate binding domain XC_1518 PF11734 TilS substrate C-terminal domain XC_1518 PF01171 PP-loop family XC_1519 PF00245 Alkaline phosphatase XC_1520 PF00375 Sodium:dicarboxylate symporter family XC_1524 PF05598 Transposase domain (DUF772) XC_1526 PF00512 His Kinase A (phospho-acceptor) domain XC_1526 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_1527 PF02954 Bacterial regulatory protein, Fis family XC_1527 PF00989 PAS fold XC_1527 PF00158 Sigma-54 interaction domain XC_1528 PF02954 Bacterial regulatory protein, Fis family XC_1528 PF00072 Response regulator receiver domain XC_1528 PF00158 Sigma-54 interaction domain XC_1534 PF00877 NlpC/P60 family XC_1535 PF00877 NlpC/P60 family XC_1536 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XC_1537 PF04235 Protein of unknown function (DUF418) XC_1538 PF01266 FAD dependent oxidoreductase XC_1539 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XC_1539 PF07992 Pyridine nucleotide-disulphide oxidoreductase XC_1543 PF05649 Peptidase family M13 XC_1543 PF01431 Peptidase family M13 XC_1544 PF01431 Peptidase family M13 XC_1544 PF05649 Peptidase family M13 XC_1546 PF07715 TonB-dependent Receptor Plug Domain XC_1546 PF00593 TonB dependent receptor XC_1547 PF10609 NUBPL iron-transfer P-loop NTPase XC_1548 PF00692 dUTPase XC_1552 PF01738 Dienelactone hydrolase family XC_1554 PF04055 Radical SAM superfamily XC_1554 PF18693 TRAM domain XC_1554 PF00919 Uncharacterized protein family UPF0004 XC_1555 PF03449 Transcription elongation factor, N-terminal XC_1555 PF01272 Transcription elongation factor, GreA/GreB, C-term XC_1559 PF00293 NUDIX domain XC_1560 PF05872 Bacterial protein of unknown function (DUF853) XC_1563 PF02666 Phosphatidylserine decarboxylase XC_1564 PF02630 SCO1/SenC XC_1565 PF05175 Methyltransferase small domain XC_1567 PF01264 Chorismate synthase XC_1568 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XC_1568 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XC_1569 PF02774 Semialdehyde dehydrogenase, dimerisation domain XC_1569 PF01118 Semialdehyde dehydrogenase, NAD binding domain XC_1572 PF01416 tRNA pseudouridine synthase XC_1573 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase XC_1574 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_1574 PF03466 LysR substrate binding domain XC_1575 PF00291 Pyridoxal-phosphate dependent enzyme XC_1577 PF00290 Tryptophan synthase alpha chain XC_1578 PF17848 Acetyl-coA carboxylase zinc finger domain XC_1578 PF01039 Carboxyl transferase domain XC_1579 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XC_1579 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XC_1579 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XC_1579 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XC_1582 PF03707 Bacterial signalling protein N terminal repeat XC_1582 PF00990 Diguanylate cyclase, GGDEF domain XC_1582 PF00563 EAL domain XC_1584 PF01152 Bacterial-like globin XC_1586 PF00106 short chain dehydrogenase XC_1587 PF00121 Triosephosphate isomerase XC_1588 PF03840 Preprotein translocase SecG subunit XC_1589 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 XC_1590 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit XC_1591 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit XC_1592 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit XC_1594 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit XC_1594 PF10531 SLBB domain XC_1594 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region XC_1595 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XC_1595 PF00384 Molybdopterin oxidoreductase XC_1595 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal XC_1596 PF00146 NADH dehydrogenase XC_1597 PF12838 4Fe-4S dicluster domain XC_1598 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 XC_1599 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XC_1600 PF00361 Proton-conducting membrane transporter XC_1600 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XC_1601 PF00361 Proton-conducting membrane transporter XC_1601 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus XC_1602 PF00361 Proton-conducting membrane transporter XC_1603 PF02576 RimP N-terminal domain XC_1603 PF17384 RimP C-terminal SH3 domain XC_1604 PF08529 NusA N-terminal domain XC_1604 PF00575 S1 RNA binding domain XC_1604 PF13184 NusA-like KH domain XC_1605 PF00009 Elongation factor Tu GTP binding domain XC_1605 PF11987 Translation-initiation factor 2 XC_1605 PF04760 Translation initiation factor IF-2, N-terminal region XC_1605 PF08364 Bacterial translation initiation factor IF-2 associated region XC_1606 PF02033 Ribosome-binding factor A XC_1607 PF09157 Pseudouridine synthase II TruB, C-terminal XC_1607 PF16198 tRNA pseudouridylate synthase B C-terminal domain XC_1607 PF01509 TruB family pseudouridylate synthase (N terminal domain) XC_1608 PF00312 Ribosomal protein S15 XC_1609 PF00013 KH domain XC_1609 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain XC_1609 PF01138 3' exoribonuclease family, domain 1 XC_1609 PF03725 3' exoribonuclease family, domain 2 XC_1609 PF00575 S1 RNA binding domain XC_1611 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain XC_1611 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain XC_1613 PF00731 AIR carboxylase XC_1614 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain XC_1614 PF02222 ATP-grasp domain XC_1615 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XC_1615 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XC_1616 PF00462 Glutaredoxin XC_1618 PF01914 MarC family integral membrane protein XC_1619 PF00593 TonB dependent receptor XC_1620 PF11892 Domain of unknown function (DUF3412) XC_1620 PF03641 Possible lysine decarboxylase XC_1620 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases XC_1621 PF07963 Prokaryotic N-terminal methylation motif XC_1625 PF05567 Neisseria PilC beta-propeller domain XC_1627 PF07963 Prokaryotic N-terminal methylation motif XC_1627 PF00114 Pilin (bacterial filament) XC_1628 PF00271 Helicase conserved C-terminal domain XC_1628 PF04851 Type III restriction enzyme, res subunit XC_1628 PF17757 UvrB interaction domain XC_1628 PF02151 UvrB/uvrC motif XC_1628 PF12344 Ultra-violet resistance protein B XC_1630 PF02534 Type IV secretory system Conjugative DNA transfer XC_1634 PF03743 Bacterial conjugation TrbI-like protein XC_1635 PF00437 Type II/IV secretion system protein XC_1636 PF01464 Transglycosylase SLT domain XC_1638 PF05101 Type IV secretory pathway, VirB3-like protein XC_1639 PF03135 CagE, TrbE, VirB family, component of type IV transporter system XC_1641 PF05598 Transposase domain (DUF772) XC_1642 PF00128 Alpha amylase, catalytic domain XC_1643 PF01609 Transposase DDE domain XC_1643 PF05598 Transposase domain (DUF772) XC_1645 PF14508 Glycosyl-hydrolase 97 N-terminal XC_1645 PF10566 Glycoside hydrolase 97 XC_1645 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation XC_1647 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 XC_1648 PF00686 Starch binding domain XC_1648 PF00128 Alpha amylase, catalytic domain XC_1649 PF00356 Bacterial regulatory proteins, lacI family XC_1650 PF03129 Anticodon binding domain XC_1650 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XC_1650 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XC_1650 PF02824 TGS domain XC_1651 PF05198 Translation initiation factor IF-3, N-terminal domain XC_1651 PF00707 Translation initiation factor IF-3, C-terminal domain XC_1652 PF01632 Ribosomal protein L35 XC_1653 PF00453 Ribosomal protein L20 XC_1654 PF01409 tRNA synthetases class II core domain (F) XC_1654 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain XC_1655 PF03484 tRNA synthetase B5 domain XC_1655 PF03147 Ferredoxin-fold anticodon binding domain XC_1655 PF01588 Putative tRNA binding domain XC_1655 PF03483 B3/4 domain XC_1655 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain XC_1656 PF00216 Bacterial DNA-binding protein XC_1657 PF13411 MerR HTH family regulatory protein XC_1660 PF02397 Bacterial sugar transferase XC_1664 PF13439 Glycosyltransferase Family 4 XC_1664 PF00534 Glycosyl transferases group 1 XC_1666 PF01943 Polysaccharide biosynthesis protein XC_1669 PF03808 Glycosyl transferase WecB/TagA/CpsF family XC_1672 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XC_1672 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XC_1674 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XC_1678 PF13292 1-deoxy-D-xylulose-5-phosphate synthase XC_1678 PF02780 Transketolase, C-terminal domain XC_1678 PF02779 Transketolase, pyrimidine binding domain XC_1680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XC_1680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XC_1680 PF02770 Acyl-CoA dehydrogenase, middle domain XC_1680 PF12806 Acetyl-CoA dehydrogenase C-terminal like XC_1686 PF08448 PAS fold XC_1686 PF00512 His Kinase A (phospho-acceptor) domain XC_1686 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_1686 PF00072 Response regulator receiver domain XC_1686 PF13188 PAS domain XC_1690 PF00893 Small Multidrug Resistance protein XC_1691 PF13426 PAS domain XC_1691 PF00072 Response regulator receiver domain XC_1691 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_1693 PF04362 Bacterial Fe(2+) trafficking XC_1694 PF00730 HhH-GPD superfamily base excision DNA repair protein XC_1694 PF00633 Helix-hairpin-helix motif XC_1694 PF14815 NUDIX domain XC_1695 PF02881 SRP54-type protein, helical bundle domain XC_1695 PF00448 SRP54-type protein, GTPase domain XC_1697 PF05544 Proline racemase XC_1698 PF01266 FAD dependent oxidoreductase XC_1700 PF04324 BFD-like [2Fe-2S] binding domain XC_1700 PF07992 Pyridine nucleotide-disulphide oxidoreductase XC_1701 PF00701 Dihydrodipicolinate synthetase family XC_1702 PF00171 Aldehyde dehydrogenase family XC_1703 PF01321 Creatinase/Prolidase N-terminal domain XC_1703 PF00557 Metallopeptidase family M24 XC_1706 PF13520 Amino acid permease XC_1712 PF07715 TonB-dependent Receptor Plug Domain XC_1712 PF00593 TonB dependent receptor XC_1713 PF07532 Bacterial Ig-like domain (group 4) XC_1714 PF04616 Glycosyl hydrolases family 43 XC_1715 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XC_1715 PF00326 Prolyl oligopeptidase family XC_1717 PF07715 TonB-dependent Receptor Plug Domain XC_1717 PF00593 TonB dependent receptor XC_1721 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_1721 PF00183 Hsp90 protein XC_1723 PF01467 Cytidylyltransferase-like XC_1725 PF00037 4Fe-4S binding domain XC_1727 PF00759 Glycosyl hydrolase family 9 XC_1727 PF02927 Cellulase N-terminal ig-like domain XC_1733 PF00202 Aminotransferase class-III XC_1735 PF02547 Queuosine biosynthesis protein XC_1736 PF01702 Queuine tRNA-ribosyltransferase XC_1737 PF02699 Preprotein translocase subunit XC_1738 PF07549 SecD/SecF GG Motif XC_1738 PF02355 Protein export membrane protein XC_1738 PF13721 SecD export protein N-terminal TM region XC_1739 PF07549 SecD/SecF GG Motif XC_1739 PF02355 Protein export membrane protein XC_1742 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit XC_1743 PF00294 pfkB family carbohydrate kinase XC_1744 PF05524 PEP-utilising enzyme, N-terminal XC_1744 PF00391 PEP-utilising enzyme, mobile domain XC_1744 PF02896 PEP-utilising enzyme, TIM barrel domain XC_1744 PF00381 PTS HPr component phosphorylation site XC_1744 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XC_1745 PF00356 Bacterial regulatory proteins, lacI family XC_1747 PF00873 AcrB/AcrD/AcrF family XC_1748 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XC_1748 PF00529 HlyD membrane-fusion protein of T1SS XC_1751 PF05088 Bacterial NAD-glutamate dehydrogenase XC_1752 PF12833 Helix-turn-helix domain XC_1753 PF00857 Isochorismatase family XC_1754 PF07690 Major Facilitator Superfamily XC_1755 PF00072 Response regulator receiver domain XC_1756 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XC_1756 PF00072 Response regulator receiver domain XC_1756 PF01627 Hpt domain XC_1756 PF00512 His Kinase A (phospho-acceptor) domain XC_1756 PF00672 HAMP domain XC_1756 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_1757 PF04286 Protein of unknown function (DUF445) XC_1759 PF00202 Aminotransferase class-III XC_1760 PF07690 Major Facilitator Superfamily XC_1761 PF02634 FdhD/NarQ family XC_1762 PF00384 Molybdopterin oxidoreductase XC_1764 PF07690 Major Facilitator Superfamily XC_1764 PF00083 Sugar (and other) transporter XC_1765 PF01814 Hemerythrin HHE cation binding domain XC_1766 PF00072 Response regulator receiver domain XC_1766 PF00990 Diguanylate cyclase, GGDEF domain XC_1767 PF01266 FAD dependent oxidoreductase XC_1768 PF00120 Glutamine synthetase, catalytic domain XC_1769 PF07722 Peptidase C26 XC_1770 PF00120 Glutamine synthetase, catalytic domain XC_1771 PF00202 Aminotransferase class-III XC_1772 PF13416 Bacterial extracellular solute-binding protein XC_1773 PF13533 Biotin-lipoyl like XC_1774 PF07690 Major Facilitator Superfamily XC_1775 PF02321 Outer membrane efflux protein XC_1776 PF00005 ABC transporter XC_1776 PF08402 TOBE domain XC_1777 PF00528 Binding-protein-dependent transport system inner membrane component XC_1778 PF00528 Binding-protein-dependent transport system inner membrane component XC_1780 PF00171 Aldehyde dehydrogenase family XC_1783 PF03471 Transporter associated domain XC_1783 PF00571 CBS domain XC_1785 PF02130 Uncharacterized protein family UPF0054 XC_1787 PF02562 PhoH-like protein XC_1788 PF00919 Uncharacterized protein family UPF0004 XC_1788 PF01938 TRAM domain XC_1788 PF04055 Radical SAM superfamily XC_1789 PF14497 Glutathione S-transferase, C-terminal domain XC_1789 PF02798 Glutathione S-transferase, N-terminal domain XC_1791 PF01464 Transglycosylase SLT domain XC_1792 PF00355 Rieske [2Fe-2S] domain XC_1792 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal XC_1793 PF00033 Cytochrome b/b6/petB XC_1793 PF00032 Cytochrome b(C-terminal)/b6/petD XC_1794 PF02167 Cytochrome C1 family XC_1795 PF00043 Glutathione S-transferase, C-terminal domain XC_1795 PF02798 Glutathione S-transferase, N-terminal domain XC_1796 PF04386 Stringent starvation protein B XC_1799 PF00270 DEAD/DEAH box helicase XC_1799 PF08494 DEAD/H associated XC_1799 PF00271 Helicase conserved C-terminal domain XC_1800 PF02245 Methylpurine-DNA glycosylase (MPG) XC_1801 PF00672 HAMP domain XC_1801 PF12729 Four helix bundle sensory module for signal transduction XC_1801 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_1802 PF01584 CheW-like domain XC_1808 PF04679 ATP dependent DNA ligase C terminal region XC_1808 PF01068 ATP dependent DNA ligase domain XC_1808 PF13298 DNA polymerase Ligase (LigD) XC_1809 PF01612 3'-5' exonuclease XC_1809 PF00570 HRDC domain XC_1810 PF03781 Sulfatase-modifying factor enzyme 1 XC_1812 PF02601 Exonuclease VII, large subunit XC_1812 PF13742 OB-fold nucleic acid binding domain XC_1813 PF08331 Domain of unknown function (DUF1730) XC_1814 PF01256 Carbohydrate kinase XC_1814 PF03853 YjeF-related protein N-terminus XC_1816 PF11741 AMIN domain XC_1816 PF01520 N-acetylmuramoyl-L-alanine amidase XC_1817 PF08676 MutL C terminal dimerisation domain XC_1817 PF01119 DNA mismatch repair protein, C-terminal domain XC_1820 PF05233 PHB accumulation regulatory domain XC_1820 PF07879 PHB/PHA accumulation regulator DNA-binding domain XC_1821 PF00106 short chain dehydrogenase XC_1822 PF00749 tRNA synthetases class I (E and Q), catalytic domain XC_1823 PF01435 Peptidase family M48 XC_1824 PF00563 EAL domain XC_1824 PF00990 Diguanylate cyclase, GGDEF domain XC_1824 PF03707 Bacterial signalling protein N terminal repeat XC_1826 PF07152 YaeQ protein XC_1827 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 XC_1828 PF00313 'Cold-shock' DNA-binding domain XC_1830 PF07859 alpha/beta hydrolase fold XC_1831 PF02696 Uncharacterized ACR, YdiU/UPF0061 family XC_1832 PF00156 Phosphoribosyl transferase domain XC_1833 PF00271 Helicase conserved C-terminal domain XC_1833 PF00270 DEAD/DEAH box helicase XC_1833 PF03880 DbpA RNA binding domain XC_1836 PF00545 ribonuclease XC_1837 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XC_1837 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XC_1838 PF00459 Inositol monophosphatase family XC_1839 PF00588 SpoU rRNA Methylase family XC_1841 PF03707 Bacterial signalling protein N terminal repeat XC_1841 PF00990 Diguanylate cyclase, GGDEF domain XC_1841 PF00563 EAL domain XC_1841 PF13188 PAS domain XC_1842 PF04055 Radical SAM superfamily XC_1843 PF08207 Elongation factor P (EF-P) KOW-like domain XC_1843 PF01132 Elongation factor P (EF-P) OB domain XC_1843 PF09285 Elongation factor P, C-terminal XC_1845 PF01979 Amidohydrolase family XC_1847 PF13419 Haloacid dehalogenase-like hydrolase XC_1849 PF00295 Glycosyl hydrolases family 28 XC_1850 PF01095 Pectinesterase XC_1852 PF00753 Metallo-beta-lactamase superfamily XC_1854 PF05985 Ethanolamine ammonia-lyase light chain (EutC) XC_1855 PF06751 Ethanolamine ammonia lyase large subunit (EutB) XC_1857 PF01551 Peptidase family M23 XC_1857 PF08460 Bacterial SH3 domain XC_1858 PF01979 Amidohydrolase family XC_1859 PF01809 Putative membrane protein insertion efficiency factor XC_1861 PF01258 Prokaryotic dksA/traR C4-type zinc finger XC_1865 PF07690 Major Facilitator Superfamily XC_1866 PF02657 Fe-S metabolism associated domain XC_1867 PF01406 tRNA synthetases class I (C) catalytic domain XC_1867 PF09190 DALR domain XC_1869 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XC_1869 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XC_1871 PF00764 Arginosuccinate synthase XC_1873 PF00696 Amino acid kinase family XC_1873 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase XC_1875 PF01118 Semialdehyde dehydrogenase, NAD binding domain XC_1876 PF00206 Lyase XC_1879 PF01472 PUA domain XC_1879 PF00696 Amino acid kinase family XC_1880 PF00171 Aldehyde dehydrogenase family XC_1881 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain XC_1881 PF02129 X-Pro dipeptidyl-peptidase (S15 family) XC_1884 PF02322 Cytochrome bd terminal oxidase subunit II XC_1885 PF01654 Cytochrome bd terminal oxidase subunit I XC_1886 PF00005 ABC transporter XC_1886 PF00664 ABC transporter transmembrane region XC_1887 PF00005 ABC transporter XC_1887 PF00664 ABC transporter transmembrane region XC_1889 PF00561 alpha/beta hydrolase fold XC_1891 PF03918 Cytochrome C biogenesis protein XC_1892 PF08534 Redoxin XC_1893 PF01578 Cytochrome C assembly protein XC_1893 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XC_1894 PF03100 CcmE XC_1896 PF01578 Cytochrome C assembly protein XC_1897 PF03379 CcmB protein XC_1898 PF00005 ABC transporter XC_1899 PF00155 Aminotransferase class I and II XC_1900 PF00795 Carbon-nitrogen hydrolase XC_1904 PF01479 S4 domain XC_1904 PF00849 RNA pseudouridylate synthase XC_1905 PF04079 Segregation and condensation complex subunit ScpB XC_1906 PF02616 Segregation and condensation protein ScpA XC_1907 PF03795 YCII-related domain XC_1909 PF00356 Bacterial regulatory proteins, lacI family XC_1912 PF13416 Bacterial extracellular solute-binding protein XC_1913 PF00528 Binding-protein-dependent transport system inner membrane component XC_1914 PF00528 Binding-protein-dependent transport system inner membrane component XC_1919 PF00795 Carbon-nitrogen hydrolase XC_1920 PF04371 Porphyromonas-type peptidyl-arginine deiminase XC_1922 PF00444 Ribosomal protein L36 XC_1923 PF02224 Cytidylate kinase XC_1924 PF00575 S1 RNA binding domain XC_1925 PF00216 Bacterial DNA-binding protein XC_1927 PF18073 Rubredoxin metal binding domain XC_1928 PF00953 Glycosyl transferase family 4 XC_1929 PF02719 Polysaccharide biosynthesis protein XC_1930 PF00483 Nucleotidyl transferase XC_1931 PF00999 Sodium/hydrogen exchanger family XC_1931 PF02254 TrkA-N domain XC_1933 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain XC_1933 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain XC_1934 PF00478 IMP dehydrogenase / GMP reductase domain XC_1934 PF00571 CBS domain XC_1935 PF02540 NAD synthase XC_1935 PF00958 GMP synthase C terminal domain XC_1935 PF00117 Glutamine amidotransferase class-I XC_1938 PF00196 Bacterial regulatory proteins, luxR family XC_1938 PF00072 Response regulator receiver domain XC_1939 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_1939 PF13185 GAF domain XC_1939 PF07730 Histidine kinase XC_1939 PF13492 GAF domain XC_1941 PF00857 Isochorismatase family XC_1943 PF07969 Amidohydrolase family XC_1944 PF05977 Transmembrane secretion effector XC_1946 PF00561 alpha/beta hydrolase fold XC_1947 PF01566 Natural resistance-associated macrophage protein XC_1948 PF01325 Iron dependent repressor, N-terminal DNA binding domain XC_1948 PF02742 Iron dependent repressor, metal binding and dimerisation domain XC_1949 PF14437 MafB19-like deaminase XC_1950 PF00929 Exonuclease XC_1951 PF00924 Mechanosensitive ion channel XC_1951 PF05552 Conserved TM helix XC_1952 PF00391 PEP-utilising enzyme, mobile domain XC_1952 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain XC_1952 PF02896 PEP-utilising enzyme, TIM barrel domain XC_1953 PF03618 Kinase/pyrophosphorylase XC_1957 PF01066 CDP-alcohol phosphatidyltransferase XC_1959 PF00561 alpha/beta hydrolase fold XC_1962 PF00355 Rieske [2Fe-2S] domain XC_1962 PF01266 FAD dependent oxidoreductase XC_1964 PF09371 Tex-like protein N-terminal domain XC_1964 PF00575 S1 RNA binding domain XC_1964 PF17674 HHH domain XC_1964 PF16921 Tex protein YqgF-like domain XC_1965 PF00563 EAL domain XC_1965 PF00990 Diguanylate cyclase, GGDEF domain XC_1965 PF08447 PAS fold XC_1965 PF08448 PAS fold XC_1968 PF00034 Cytochrome c XC_1970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XC_1971 PF00873 AcrB/AcrD/AcrF family XC_1972 PF00873 AcrB/AcrD/AcrF family XC_1973 PF01081 KDPG and KHG aldolase XC_1974 PF00920 Dehydratase family XC_1975 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase XC_1976 PF02685 Glucokinase XC_1977 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XC_1977 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XC_1978 PF00005 ABC transporter XC_1978 PF17912 MalK OB fold domain XC_1980 PF01571 Aminomethyltransferase folate-binding domain XC_1981 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XC_1982 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XC_1983 PF02910 Fumarate reductase flavoprotein C-term XC_1983 PF00890 FAD binding domain XC_1985 PF13085 2Fe-2S iron-sulfur cluster binding domain XC_1986 PF03937 Flavinator of succinate dehydrogenase XC_1988 PF12704 MacB-like periplasmic core domain XC_1988 PF02687 FtsX-like permease family XC_1989 PF00005 ABC transporter XC_1992 PF00753 Metallo-beta-lactamase superfamily XC_1992 PF03772 Competence protein XC_1993 PF01618 MotA/TolQ/ExbB proton channel family XC_1995 PF00664 ABC transporter transmembrane region XC_1995 PF00005 ABC transporter XC_1996 PF02606 Tetraacyldisaccharide-1-P 4'-kinase XC_1997 PF02348 Cytidylyltransferase XC_1998 PF01451 Low molecular weight phosphotyrosine protein phosphatase XC_2000 PF01541 GIY-YIG catalytic domain XC_2000 PF02151 UvrB/uvrC motif XC_2000 PF08459 UvrC Helix-hairpin-helix N-terminal XC_2001 PF01066 CDP-alcohol phosphatidyltransferase XC_2002 PF00589 Phage integrase family XC_2002 PF13356 Arm DNA-binding domain XC_2004 PF05394 Avirulence protein XC_2007 PF05598 Transposase domain (DUF772) XC_2010 PF01527 Transposase XC_2011 PF13276 HTH-like domain XC_2011 PF13683 Integrase core domain XC_2012 PF05598 Transposase domain (DUF772) XC_2012 PF01609 Transposase DDE domain XC_2016 PF04610 TrbL/VirB6 plasmid conjugal transfer protein XC_2029 PF04002 RadC-like JAB domain XC_2060 PF02021 Uncharacterised protein family UPF0102 XC_2063 PF00145 C-5 cytosine-specific DNA methylase XC_2064 PF01751 Toprim domain XC_2064 PF01131 DNA topoisomerase XC_2065 PF00436 Single-strand binding protein family XC_2071 PF13614 AAA domain XC_2079 PF10544 T5orf172 domain XC_2083 PF13683 Integrase core domain XC_2083 PF13276 HTH-like domain XC_2084 PF13700 Domain of unknown function (DUF4158) XC_2084 PF01526 Tn3 transposase DDE domain XC_2086 PF13195 Protein of unknown function (DUF4011) XC_2086 PF13087 AAA domain XC_2086 PF13195 Protein of unknown function (DUF4011) XC_2086 PF13086 AAA domain XC_2086 PF13087 AAA domain XC_2086 PF13086 AAA domain XC_2087 PF07519 Tannase and feruloyl esterase XC_2090 PF06969 HemN C-terminal domain XC_2090 PF04055 Radical SAM superfamily XC_2091 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XC_2091 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XC_2091 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XC_2092 PF01593 Flavin containing amine oxidoreductase XC_2093 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XC_2096 PF00196 Bacterial regulatory proteins, luxR family XC_2096 PF00072 Response regulator receiver domain XC_2098 PF12111 Polyribonucleotide phosphorylase C terminal XC_2098 PF10150 Ribonuclease E/G family XC_2098 PF00575 S1 RNA binding domain XC_2099 PF00849 RNA pseudouridylate synthase XC_2099 PF01479 S4 domain XC_2100 PF02535 ZIP Zinc transporter XC_2102 PF01329 Pterin 4 alpha carbinolamine dehydratase XC_2103 PF01106 NifU-like domain XC_2108 PF02303 Helix-destabilising protein XC_2110 PF17091 Inovirus G7P protein XC_2122 PF17091 Inovirus G7P protein XC_2128 PF10091 Putative glucoamylase XC_2128 PF06165 Glycosyltransferase family 36 XC_2128 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain XC_2129 PF08448 PAS fold XC_2129 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_2129 PF13188 PAS domain XC_2129 PF00512 His Kinase A (phospho-acceptor) domain XC_2129 PF00072 Response regulator receiver domain XC_2130 PF00072 Response regulator receiver domain XC_2130 PF13426 PAS domain XC_2130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_2136 PF02203 Tar ligand binding domain homologue XC_2136 PF00672 HAMP domain XC_2136 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_2137 PF07660 Secretin and TonB N terminus short domain XC_2137 PF07715 TonB-dependent Receptor Plug Domain XC_2137 PF00593 TonB dependent receptor XC_2138 PF09335 SNARE associated Golgi protein XC_2142 PF01638 HxlR-like helix-turn-helix XC_2145 PF02630 SCO1/SenC XC_2148 PF01431 Peptidase family M13 XC_2148 PF05649 Peptidase family M13 XC_2150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XC_2151 PF07995 Glucose / Sorbosone dehydrogenase XC_2153 PF00512 His Kinase A (phospho-acceptor) domain XC_2153 PF08446 PAS fold XC_2153 PF00360 Phytochrome region XC_2153 PF01590 GAF domain XC_2153 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_2156 PF00561 alpha/beta hydrolase fold XC_2159 PF00082 Subtilase family XC_2159 PF03797 Autotransporter beta-domain XC_2160 PF12951 Passenger-associated-transport-repeat XC_2160 PF12951 Passenger-associated-transport-repeat XC_2161 PF00990 Diguanylate cyclase, GGDEF domain XC_2161 PF08448 PAS fold XC_2161 PF00563 EAL domain XC_2161 PF08447 PAS fold XC_2163 PF00072 Response regulator receiver domain XC_2163 PF01339 CheB methylesterase XC_2164 PF05974 Domain of unknown function (DUF892) XC_2167 PF01266 FAD dependent oxidoreductase XC_2169 PF00483 Nucleotidyl transferase XC_2171 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase XC_2174 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XC_2175 PF00384 Molybdopterin oxidoreductase XC_2175 PF04879 Molybdopterin oxidoreductase Fe4S4 domain XC_2175 PF04324 BFD-like [2Fe-2S] binding domain XC_2175 PF01568 Molydopterin dinucleotide binding domain XC_2176 PF11723 Homotrimeric ring hydroxylase XC_2176 PF00355 Rieske [2Fe-2S] domain XC_2177 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XC_2177 PF07992 Pyridine nucleotide-disulphide oxidoreductase XC_2177 PF04324 BFD-like [2Fe-2S] binding domain XC_2177 PF18267 Rubredoxin NAD+ reductase C-terminal domain XC_2177 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XC_2178 PF07690 Major Facilitator Superfamily XC_2180 PF03861 ANTAR domain XC_2180 PF00072 Response regulator receiver domain XC_2181 PF10414 Sirohaem synthase dimerisation region XC_2181 PF14824 Sirohaem biosynthesis protein central XC_2181 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XC_2183 PF12804 MobA-like NTP transferase domain XC_2184 PF03453 MoeA N-terminal region (domain I and II) XC_2184 PF03454 MoeA C-terminal region (domain IV) XC_2184 PF00994 Probable molybdopterin binding domain XC_2186 PF03372 Endonuclease/Exonuclease/phosphatase family XC_2188 PF13823 Alcohol dehydrogenase GroES-associated XC_2188 PF08240 Alcohol dehydrogenase GroES-like domain XC_2188 PF00107 Zinc-binding dehydrogenase XC_2191 PF00067 Cytochrome P450 XC_2192 PF00106 short chain dehydrogenase XC_2195 PF00899 ThiF family XC_2196 PF00994 Probable molybdopterin binding domain XC_2196 PF03453 MoeA N-terminal region (domain I and II) XC_2196 PF03454 MoeA C-terminal region (domain IV) XC_2197 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal XC_2197 PF01926 50S ribosome-binding GTPase XC_2198 PF13360 PQQ-like domain XC_2198 PF01011 PQQ enzyme repeat XC_2200 PF13464 Domain of unknown function (DUF4115) XC_2202 PF04055 Radical SAM superfamily XC_2203 PF00334 Nucleoside diphosphate kinase XC_2205 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XC_2205 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XC_2205 PF00378 Enoyl-CoA hydratase/isomerase XC_2206 PF00108 Thiolase, N-terminal domain XC_2206 PF02803 Thiolase, C-terminal domain XC_2208 PF00654 Voltage gated chloride channel XC_2209 PF12002 MgsA AAA+ ATPase C terminal XC_2209 PF00004 ATPase family associated with various cellular activities (AAA) XC_2209 PF16193 AAA C-terminal domain XC_2211 PF03548 Outer membrane lipoprotein carrier protein LolA XC_2213 PF17854 FtsK alpha domain XC_2213 PF09397 Ftsk gamma domain XC_2213 PF01580 FtsK/SpoIIIE family XC_2213 PF13491 4TM region of DNA translocase FtsK/SpoIIIE XC_2214 PF07992 Pyridine nucleotide-disulphide oxidoreductase XC_2216 PF03588 Leucyl/phenylalanyl-tRNA protein transferase XC_2217 PF01176 Translation initiation factor 1A / IF-1 XC_2218 PF17871 AAA lid domain XC_2218 PF00004 ATPase family associated with various cellular activities (AAA) XC_2218 PF07724 AAA domain (Cdc48 subfamily) XC_2218 PF02861 Clp amino terminal domain, pathogenicity island component XC_2218 PF10431 C-terminal, D2-small domain, of ClpB protein XC_2219 PF02617 ATP-dependent Clp protease adaptor protein ClpS XC_2220 PF00293 NUDIX domain XC_2222 PF04356 Protein of unknown function (DUF489) XC_2223 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_2223 PF00672 HAMP domain XC_2223 PF12729 Four helix bundle sensory module for signal transduction XC_2226 PF03707 Bacterial signalling protein N terminal repeat XC_2226 PF00990 Diguanylate cyclase, GGDEF domain XC_2226 PF00563 EAL domain XC_2227 PF07730 Histidine kinase XC_2227 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_2228 PF03707 Bacterial signalling protein N terminal repeat XC_2228 PF00990 Diguanylate cyclase, GGDEF domain XC_2228 PF00563 EAL domain XC_2229 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_2229 PF00512 His Kinase A (phospho-acceptor) domain XC_2233 PF00072 Response regulator receiver domain XC_2233 PF01584 CheW-like domain XC_2235 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XC_2235 PF00460 Flagella basal body rod protein XC_2236 PF03963 Flagellar hook capping protein - N-terminal region XC_2237 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XC_2237 PF00460 Flagella basal body rod protein XC_2237 PF07559 Flagellar basal body protein FlaE XC_2238 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XC_2238 PF00460 Flagella basal body rod protein XC_2239 PF00460 Flagella basal body rod protein XC_2239 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XC_2240 PF02107 Flagellar L-ring protein XC_2241 PF02119 Flagellar P-ring protein XC_2242 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase XC_2242 PF10135 Rod binding protein XC_2243 PF07196 Flagellin hook IN motif XC_2243 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XC_2244 PF00669 Bacterial flagellin N-terminal helical region XC_2245 PF00700 Bacterial flagellin C-terminal helical region XC_2245 PF00669 Bacterial flagellin N-terminal helical region XC_2246 PF07196 Flagellin hook IN motif XC_2246 PF02465 Flagellar hook-associated protein 2 N-terminus XC_2246 PF07195 Flagellar hook-associated protein 2 C-terminus XC_2247 PF02561 Flagellar protein FliS XC_2250 PF00196 Bacterial regulatory proteins, luxR family XC_2250 PF00072 Response regulator receiver domain XC_2251 PF04552 Sigma-54, DNA binding domain XC_2251 PF04963 Sigma-54 factor, core binding domain XC_2251 PF00309 Sigma-54 factor, Activator interacting domain (AID) XC_2252 PF00072 Response regulator receiver domain XC_2252 PF01339 CheB methylesterase XC_2253 PF00158 Sigma-54 interaction domain XC_2253 PF00072 Response regulator receiver domain XC_2253 PF02954 Bacterial regulatory protein, Fis family XC_2254 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XC_2258 PF00535 Glycosyl transferase family 2 XC_2259 PF02049 Flagellar hook-basal body complex protein FliE XC_2260 PF01514 Secretory protein of YscJ/FliF family XC_2260 PF08345 Flagellar M-ring protein C-terminal XC_2261 PF14841 FliG middle domain XC_2261 PF14842 FliG N-terminal domain XC_2261 PF01706 FliG C-terminal domain XC_2263 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XC_2263 PF18269 T3SS EscN ATPase C-terminal domain XC_2267 PF02154 Flagellar motor switch protein FliM XC_2267 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XC_2268 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XC_2269 PF04347 Flagellar biosynthesis protein, FliO XC_2270 PF00813 FliP family XC_2272 PF01313 Bacterial export proteins, family 3 XC_2273 PF01311 Bacterial export proteins, family 1 XC_2274 PF13188 PAS domain XC_2274 PF03707 Bacterial signalling protein N terminal repeat XC_2274 PF00990 Diguanylate cyclase, GGDEF domain XC_2274 PF00563 EAL domain XC_2275 PF00563 EAL domain XC_2275 PF03707 Bacterial signalling protein N terminal repeat XC_2275 PF00990 Diguanylate cyclase, GGDEF domain XC_2276 PF03707 Bacterial signalling protein N terminal repeat XC_2276 PF00990 Diguanylate cyclase, GGDEF domain XC_2276 PF00563 EAL domain XC_2277 PF01312 FlhB HrpN YscU SpaS Family XC_2278 PF00771 FHIPEP family XC_2279 PF00448 SRP54-type protein, GTPase domain XC_2280 PF10609 NUBPL iron-transfer P-loop NTPase XC_2281 PF04542 Sigma-70 region 2 XC_2281 PF04545 Sigma-70, region 4 XC_2281 PF04539 Sigma-70 region 3 XC_2282 PF00072 Response regulator receiver domain XC_2283 PF04344 Chemotaxis phosphatase, CheZ XC_2284 PF01584 CheW-like domain XC_2284 PF02895 Signal transducing histidine kinase, homodimeric domain XC_2284 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_2284 PF07194 P2 response regulator binding domain XC_2284 PF01627 Hpt domain XC_2292 PF05598 Transposase domain (DUF772) XC_2295 PF03239 Iron permease FTR1 family XC_2297 PF01618 MotA/TolQ/ExbB proton channel family XC_2298 PF00691 OmpA family XC_2298 PF13677 Membrane MotB of proton-channel complex MotA/MotB XC_2299 PF13614 AAA domain XC_2300 PF01584 CheW-like domain XC_2302 PF00072 Response regulator receiver domain XC_2303 PF02895 Signal transducing histidine kinase, homodimeric domain XC_2303 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_2303 PF01627 Hpt domain XC_2303 PF01584 CheW-like domain XC_2303 PF09078 CheY binding XC_2304 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_2304 PF00672 HAMP domain XC_2304 PF02203 Tar ligand binding domain homologue XC_2307 PF00672 HAMP domain XC_2307 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_2307 PF02203 Tar ligand binding domain homologue XC_2308 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_2308 PF00672 HAMP domain XC_2308 PF02203 Tar ligand binding domain homologue XC_2309 PF00672 HAMP domain XC_2309 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_2309 PF02203 Tar ligand binding domain homologue XC_2311 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_2311 PF02203 Tar ligand binding domain homologue XC_2311 PF00672 HAMP domain XC_2313 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_2313 PF00672 HAMP domain XC_2313 PF02203 Tar ligand binding domain homologue XC_2314 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_2314 PF02203 Tar ligand binding domain homologue XC_2314 PF00672 HAMP domain XC_2316 PF02203 Tar ligand binding domain homologue XC_2316 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_2316 PF00672 HAMP domain XC_2317 PF07238 PilZ domain XC_2317 PF07317 Flagellar regulator YcgR XC_2318 PF01584 CheW-like domain XC_2320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_2320 PF00672 HAMP domain XC_2320 PF02203 Tar ligand binding domain homologue XC_2321 PF03705 CheR methyltransferase, all-alpha domain XC_2321 PF01739 CheR methyltransferase, SAM binding domain XC_2322 PF03975 CheD chemotactic sensory transduction XC_2323 PF01339 CheB methylesterase XC_2323 PF00072 Response regulator receiver domain XC_2324 PF00990 Diguanylate cyclase, GGDEF domain XC_2324 PF03707 Bacterial signalling protein N terminal repeat XC_2324 PF00563 EAL domain XC_2325 PF00561 alpha/beta hydrolase fold XC_2326 PF11791 Aconitate B N-terminal domain XC_2326 PF00330 Aconitase family (aconitate hydratase) XC_2326 PF06434 Aconitate hydratase 2 N-terminus XC_2329 PF00330 Aconitase family (aconitate hydratase) XC_2329 PF00694 Aconitase C-terminal domain XC_2331 PF00501 AMP-binding enzyme XC_2331 PF13193 AMP-binding enzyme C-terminal domain XC_2332 PF00378 Enoyl-CoA hydratase/isomerase XC_2333 PF00512 His Kinase A (phospho-acceptor) domain XC_2333 PF00072 Response regulator receiver domain XC_2333 PF01627 Hpt domain XC_2333 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_2334 PF00072 Response regulator receiver domain XC_2334 PF01627 Hpt domain XC_2334 PF00512 His Kinase A (phospho-acceptor) domain XC_2334 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_2335 PF00072 Response regulator receiver domain XC_2336 PF00152 tRNA synthetases class II (D, K and N) XC_2336 PF01336 OB-fold nucleic acid binding domain XC_2337 PF00472 RF-1 domain XC_2337 PF03462 PCRF domain XC_2338 PF00072 Response regulator receiver domain XC_2338 PF04397 LytTr DNA-binding domain XC_2343 PF01368 DHH family XC_2343 PF02272 DHHA1 domain XC_2343 PF17768 RecJ OB domain XC_2345 PF01272 Transcription elongation factor, GreA/GreB, C-term XC_2345 PF03449 Transcription elongation factor, N-terminal XC_2346 PF02142 MGS-like domain XC_2346 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XC_2346 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XC_2348 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain XC_2348 PF00117 Glutamine amidotransferase class-I XC_2349 PF01113 Dihydrodipicolinate reductase, N-terminus XC_2349 PF05173 Dihydrodipicolinate reductase, C-terminus XC_2350 PF03475 3-alpha domain XC_2350 PF03473 MOSC domain XC_2351 PF00155 Aminotransferase class I and II XC_2354 PF07670 Nucleoside recognition XC_2354 PF02421 Ferrous iron transport protein B XC_2354 PF07664 Ferrous iron transport protein B C terminus XC_2356 PF00378 Enoyl-CoA hydratase/isomerase XC_2357 PF00682 HMGL-like XC_2358 PF00106 short chain dehydrogenase XC_2359 PF01132 Elongation factor P (EF-P) OB domain XC_2359 PF08207 Elongation factor P (EF-P) KOW-like domain XC_2359 PF09285 Elongation factor P, C-terminal XC_2363 PF02913 FAD linked oxidases, C-terminal domain XC_2363 PF01565 FAD binding domain XC_2364 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XC_2364 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XC_2367 PF13520 Amino acid permease XC_2368 PF13520 Amino acid permease XC_2369 PF00596 Class II Aldolase and Adducin N-terminal domain XC_2370 PF03079 ARD/ARD' family XC_2374 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase XC_2374 PF01502 Phosphoribosyl-AMP cyclohydrolase XC_2375 PF00977 Histidine biosynthesis protein XC_2376 PF00977 Histidine biosynthesis protein XC_2377 PF00117 Glutamine amidotransferase class-I XC_2378 PF00475 Imidazoleglycerol-phosphate dehydratase XC_2379 PF00155 Aminotransferase class I and II XC_2380 PF00815 Histidinol dehydrogenase XC_2381 PF08029 HisG, C-terminal domain XC_2381 PF01634 ATP phosphoribosyltransferase XC_2383 PF13393 Histidyl-tRNA synthetase XC_2383 PF03129 Anticodon binding domain XC_2384 PF00027 Cyclic nucleotide-binding domain XC_2384 PF13545 Crp-like helix-turn-helix domain XC_2386 PF14821 Threonine synthase N terminus XC_2386 PF00291 Pyridoxal-phosphate dependent enzyme XC_2388 PF00288 GHMP kinases N terminal domain XC_2388 PF08544 GHMP kinases C terminal XC_2389 PF13840 ACT domain XC_2389 PF01842 ACT domain XC_2389 PF03447 Homoserine dehydrogenase, NAD binding domain XC_2389 PF00696 Amino acid kinase family XC_2389 PF00742 Homoserine dehydrogenase XC_2390 PF03073 TspO/MBR family XC_2394 PF13683 Integrase core domain XC_2394 PF13276 HTH-like domain XC_2395 PF01527 Transposase XC_2396 PF05860 haemagglutination activity domain XC_2396 PF04829 Pre-toxin domain with VENN motif XC_2396 PF13332 Hemagglutinin repeat XC_2400 PF13086 AAA domain XC_2400 PF13195 Protein of unknown function (DUF4011) XC_2400 PF13086 AAA domain XC_2400 PF13087 AAA domain XC_2400 PF13087 AAA domain XC_2400 PF13195 Protein of unknown function (DUF4011) XC_2404 PF02794 RTX toxin acyltransferase family XC_2405 PF07690 Major Facilitator Superfamily XC_2409 PF03412 Peptidase C39 family XC_2409 PF00005 ABC transporter XC_2409 PF00664 ABC transporter transmembrane region XC_2413 PF02534 Type IV secretory system Conjugative DNA transfer XC_2426 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) XC_2445 PF00171 Aldehyde dehydrogenase family XC_2448 PF01180 Dihydroorotate dehydrogenase XC_2449 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain XC_2449 PF01565 FAD binding domain XC_2450 PF00892 EamA-like transporter family XC_2451 PF01177 Asp/Glu/Hydantoin racemase XC_2452 PF00083 Sugar (and other) transporter XC_2452 PF08946 Osmosensory transporter coiled coil XC_2453 PF00083 Sugar (and other) transporter XC_2454 PF01569 PAP2 superfamily XC_2455 PF04551 GcpE protein XC_2457 PF00072 Response regulator receiver domain XC_2458 PF02013 Cellulose or protein binding domain XC_2458 PF00150 Cellulase (glycosyl hydrolase family 5) XC_2459 PF00360 Phytochrome region XC_2459 PF00563 EAL domain XC_2459 PF00990 Diguanylate cyclase, GGDEF domain XC_2459 PF01590 GAF domain XC_2460 PF00474 Sodium:solute symporter family XC_2461 PF01915 Glycosyl hydrolase family 3 C-terminal domain XC_2461 PF00933 Glycosyl hydrolase family 3 N terminal domain XC_2461 PF14310 Fibronectin type III-like domain XC_2465 PF00342 Phosphoglucose isomerase XC_2466 PF02261 Aspartate decarboxylase XC_2467 PF02569 Pantoate-beta-alanine ligase XC_2468 PF02548 Ketopantoate hydroxymethyltransferase XC_2469 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XC_2470 PF12627 Probable RNA and SrmB- binding site of polymerase A XC_2470 PF12626 Polymerase A arginine-rich C-terminus XC_2470 PF01743 Poly A polymerase head domain XC_2471 PF02649 Type I GTP cyclohydrolase folE2 XC_2472 PF01520 N-acetylmuramoyl-L-alanine amidase XC_2476 PF00083 Sugar (and other) transporter XC_2478 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XC_2478 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XC_2480 PF16338 Domain of unknown function (DUF4968) XC_2480 PF17137 Domain of unknown function (DUF5110) XC_2480 PF01055 Glycosyl hydrolases family 31 XC_2483 PF00942 Cellulose binding domain XC_2483 PF03442 Carbohydrate binding domain X2 XC_2486 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_2486 PF03466 LysR substrate binding domain XC_2487 PF01081 KDPG and KHG aldolase XC_2488 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XC_2488 PF13378 Enolase C-terminal domain-like XC_2489 PF08450 SMP-30/Gluconolactonase/LRE-like region XC_2490 PF05035 2-keto-3-deoxy-galactonokinase XC_2491 PF11953 Domain of unknown function (DUF3470) XC_2491 PF00037 4Fe-4S binding domain XC_2493 PF00701 Dihydrodipicolinate synthetase family XC_2496 PF00578 AhpC/TSA family XC_2497 PF13638 PIN domain XC_2497 PF02562 PhoH-like protein XC_2499 PF02581 Thiamine monophosphate synthase XC_2499 PF08543 Phosphomethylpyrimidine kinase XC_2502 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_2502 PF03466 LysR substrate binding domain XC_2503 PF02678 Pirin XC_2503 PF17954 Quercetinase C-terminal cupin domain XC_2504 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XC_2504 PF08447 PAS fold XC_2504 PF13426 PAS domain XC_2506 PF02599 Global regulator protein family XC_2507 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XC_2507 PF01411 tRNA synthetases class II (A) XC_2507 PF02272 DHHA1 domain XC_2508 PF02631 RecX family XC_2509 PF00154 recA bacterial DNA recombination protein XC_2510 PF00717 Peptidase S24-like XC_2510 PF01726 LexA DNA binding domain XC_2511 PF03109 ABC1 family XC_2512 PF07715 TonB-dependent Receptor Plug Domain XC_2512 PF00593 TonB dependent receptor XC_2513 PF02464 Competence-damaged protein XC_2514 PF13167 GTP-binding GTPase N-terminal XC_2514 PF01926 50S ribosome-binding GTPase XC_2514 PF16360 GTP-binding GTPase Middle Region XC_2515 PF17209 Hfq protein XC_2517 PF00809 Pterin binding enzyme XC_2518 PF06480 FtsH Extracellular XC_2518 PF00004 ATPase family associated with various cellular activities (AAA) XC_2518 PF17862 AAA+ lid domain XC_2518 PF01434 Peptidase family M41 XC_2519 PF01728 FtsJ-like methyltransferase XC_2520 PF01985 CRS1 / YhbY (CRM) domain XC_2521 PF04430 Protein of unknown function (DUF498/DUF598) XC_2522 PF01476 LysM domain XC_2522 PF01551 Peptidase family M23 XC_2523 PF09335 SNARE associated Golgi protein XC_2525 PF01975 Survival protein SurE XC_2526 PF01713 Smr domain XC_2527 PF01142 tRNA pseudouridine synthase D (TruD) XC_2528 PF02542 YgbB family XC_2529 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase XC_2530 PF04977 Septum formation initiator XC_2531 PF00113 Enolase, C-terminal TIM barrel domain XC_2531 PF03952 Enolase, N-terminal domain XC_2533 PF00793 DAHP synthetase I family XC_2534 PF00117 Glutamine amidotransferase class-I XC_2534 PF06418 CTP synthase N-terminus XC_2536 PF00204 DNA gyrase B XC_2536 PF01751 Toprim domain XC_2536 PF00986 DNA gyrase B subunit, carboxyl terminus XC_2536 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_2537 PF02611 CDP-diacylglycerol pyrophosphatase XC_2540 PF01384 Phosphate transporter family XC_2542 PF03471 Transporter associated domain XC_2542 PF00571 CBS domain XC_2542 PF01595 Cyclin M transmembrane N-terminal domain XC_2545 PF00296 Luciferase-like monooxygenase XC_2546 PF07690 Major Facilitator Superfamily XC_2547 PF00005 ABC transporter XC_2547 PF00664 ABC transporter transmembrane region XC_2551 PF00534 Glycosyl transferases group 1 XC_2551 PF13579 Glycosyl transferase 4-like domain XC_2552 PF00534 Glycosyl transferases group 1 XC_2552 PF13439 Glycosyltransferase Family 4 XC_2554 PF13382 Adenine deaminase C-terminal domain XC_2554 PF01979 Amidohydrolase family XC_2558 PF00535 Glycosyl transferase family 2 XC_2559 PF01943 Polysaccharide biosynthesis protein XC_2560 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XC_2561 PF05523 WxcM-like, C-terminal XC_2562 PF01292 Prokaryotic cytochrome b561 XC_2564 PF00034 Cytochrome c XC_2566 PF04542 Sigma-70 region 2 XC_2566 PF08281 Sigma-70, region 4 XC_2568 PF00082 Subtilase family XC_2569 PF01578 Cytochrome C assembly protein XC_2570 PF04995 Heme exporter protein D (CcmD) XC_2571 PF03100 CcmE XC_2572 PF01578 Cytochrome C assembly protein XC_2572 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XC_2573 PF08534 Redoxin XC_2574 PF03918 Cytochrome C biogenesis protein XC_2576 PF00072 Response regulator receiver domain XC_2576 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_2576 PF13426 PAS domain XC_2577 PF06745 KaiC XC_2578 PF00072 Response regulator receiver domain XC_2578 PF00512 His Kinase A (phospho-acceptor) domain XC_2578 PF13188 PAS domain XC_2578 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_2578 PF08448 PAS fold XC_2579 PF00072 Response regulator receiver domain XC_2579 PF00512 His Kinase A (phospho-acceptor) domain XC_2579 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_2579 PF13188 PAS domain XC_2579 PF08448 PAS fold XC_2586 PF02585 GlcNAc-PI de-N-acetylase XC_2593 PF01527 Transposase XC_2594 PF13276 HTH-like domain XC_2594 PF13683 Integrase core domain XC_2597 PF01527 Transposase XC_2598 PF13276 HTH-like domain XC_2598 PF00665 Integrase core domain XC_2598 PF13333 Integrase core domain XC_2601 PF00239 Resolvase, N terminal domain XC_2601 PF02796 Helix-turn-helix domain of resolvase XC_2603 PF13683 Integrase core domain XC_2603 PF13276 HTH-like domain XC_2604 PF01527 Transposase XC_2612 PF04002 RadC-like JAB domain XC_2622 PF05598 Transposase domain (DUF772) XC_2622 PF01609 Transposase DDE domain XC_2623 PF13276 HTH-like domain XC_2623 PF13683 Integrase core domain XC_2624 PF01527 Transposase XC_2625 PF01527 Transposase XC_2626 PF13276 HTH-like domain XC_2626 PF13683 Integrase core domain XC_2628 PF13276 HTH-like domain XC_2628 PF13683 Integrase core domain XC_2629 PF01527 Transposase XC_2637 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) XC_2639 PF03466 LysR substrate binding domain XC_2639 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_2640 PF02403 Seryl-tRNA synthetase N-terminal domain XC_2640 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XC_2641 PF03544 Gram-negative bacterial TonB protein C-terminal XC_2642 PF03544 Gram-negative bacterial TonB protein C-terminal XC_2643 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XC_2644 PF01842 ACT domain XC_2644 PF00800 Prephenate dehydratase XC_2644 PF01817 Chorismate mutase type II XC_2645 PF00266 Aminotransferase class-V XC_2646 PF00174 Oxidoreductase molybdopterin binding domain XC_2647 PF01794 Ferric reductase like transmembrane component XC_2652 PF00392 Bacterial regulatory proteins, gntR family XC_2652 PF07702 UTRA domain XC_2653 PF01979 Amidohydrolase family XC_2655 PF00221 Aromatic amino acid lyase XC_2657 PF01175 Urocanase Rossmann-like domain XC_2657 PF17391 Urocanase N-terminal domain XC_2657 PF17392 Urocanase C-terminal domain XC_2659 PF13360 PQQ-like domain XC_2660 PF00521 DNA gyrase/topoisomerase IV, subunit A XC_2660 PF03989 DNA gyrase C-terminal domain, beta-propeller XC_2661 PF01008 Initiation factor 2 subunit family XC_2663 PF00152 tRNA synthetases class II (D, K and N) XC_2664 PF12826 Helix-hairpin-helix motif XC_2664 PF00533 BRCA1 C Terminus (BRCT) domain XC_2664 PF03120 NAD-dependent DNA ligase OB-fold domain XC_2664 PF03119 NAD-dependent DNA ligase C4 zinc finger domain XC_2664 PF01653 NAD-dependent DNA ligase adenylation domain XC_2665 PF00155 Aminotransferase class I and II XC_2666 PF04354 ZipA, C-terminal FtsZ-binding domain XC_2667 PF02463 RecF/RecN/SMC N terminal domain XC_2669 PF01281 Ribosomal protein L9, N-terminal domain XC_2669 PF03948 Ribosomal protein L9, C-terminal domain XC_2670 PF01084 Ribosomal protein S18 XC_2671 PF01250 Ribosomal protein S6 XC_2672 PF01521 Iron-sulphur cluster biosynthesis XC_2673 PF01336 OB-fold nucleic acid binding domain XC_2673 PF00152 tRNA synthetases class II (D, K and N) XC_2678 PF00484 Carbonic anhydrase XC_2679 PF06052 3-hydroxyanthranilic acid dioxygenase XC_2681 PF00266 Aminotransferase class-V XC_2682 PF01494 FAD binding domain XC_2683 PF00929 Exonuclease XC_2683 PF08411 Exonuclease C-terminal XC_2688 PF01513 ATP-NAD kinase XC_2689 PF01170 Putative RNA methylase family UPF0020 XC_2689 PF02926 THUMP domain XC_2689 PF10672 S-adenosylmethionine-dependent methyltransferase XC_2697 PF00581 Rhodanese-like domain XC_2698 PF00293 NUDIX domain XC_2699 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XC_2699 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XC_2700 PF00378 Enoyl-CoA hydratase/isomerase XC_2702 PF00633 Helix-hairpin-helix motif XC_2702 PF00730 HhH-GPD superfamily base excision DNA repair protein XC_2702 PF10576 Iron-sulfur binding domain of endonuclease III XC_2703 PF01740 STAS domain XC_2703 PF00916 Sulfate permease family XC_2704 PF00484 Carbonic anhydrase XC_2707 PF12849 PBP superfamily domain XC_2708 PF12849 PBP superfamily domain XC_2709 PF00528 Binding-protein-dependent transport system inner membrane component XC_2710 PF00528 Binding-protein-dependent transport system inner membrane component XC_2711 PF00005 ABC transporter XC_2712 PF01895 PhoU domain XC_2714 PF00929 Exonuclease XC_2715 PF00990 Diguanylate cyclase, GGDEF domain XC_2715 PF07694 5TMR of 5TMR-LYT XC_2716 PF00588 SpoU rRNA Methylase family XC_2716 PF08032 RNA 2'-O ribose methyltransferase substrate binding XC_2718 PF17876 Cold shock domain XC_2718 PF08461 Ribonuclease R winged-helix domain XC_2718 PF08206 Ribonuclease B OB domain XC_2718 PF00575 S1 RNA binding domain XC_2718 PF00773 RNB domain XC_2721 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XC_2721 PF02770 Acyl-CoA dehydrogenase, middle domain XC_2721 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XC_2722 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XC_2722 PF02770 Acyl-CoA dehydrogenase, middle domain XC_2722 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XC_2723 PF01209 ubiE/COQ5 methyltransferase family XC_2724 PF02574 Homocysteine S-methyltransferase XC_2724 PF00809 Pterin binding enzyme XC_2725 PF02310 B12 binding domain XC_2725 PF02965 Vitamin B12 dependent methionine synthase, activation domain XC_2725 PF00809 Pterin binding enzyme XC_2725 PF02574 Homocysteine S-methyltransferase XC_2725 PF02607 B12 binding domain XC_2727 PF00294 pfkB family carbohydrate kinase XC_2728 PF07690 Major Facilitator Superfamily XC_2729 PF00356 Bacterial regulatory proteins, lacI family XC_2732 PF04102 SlyX XC_2733 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XC_2733 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XC_2733 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XC_2734 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XC_2734 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XC_2735 PF00255 Glutathione peroxidase XC_2736 PF00392 Bacterial regulatory proteins, gntR family XC_2737 PF00005 ABC transporter XC_2742 PF10415 Fumarase C C-terminus XC_2742 PF00206 Lyase XC_2743 PF01595 Cyclin M transmembrane N-terminal domain XC_2743 PF03471 Transporter associated domain XC_2743 PF00571 CBS domain XC_2744 PF08328 Adenylosuccinate lyase C-terminal XC_2744 PF00206 Lyase XC_2747 PF08007 Cupin superfamily protein XC_2749 PF16078 2-oxoglutarate dehydrogenase N-terminus XC_2749 PF00676 Dehydrogenase E1 component XC_2749 PF16870 2-oxoglutarate dehydrogenase C-terminal XC_2749 PF02779 Transketolase, pyrimidine binding domain XC_2750 PF02817 e3 binding domain XC_2750 PF00364 Biotin-requiring enzyme XC_2750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XC_2751 PF07992 Pyridine nucleotide-disulphide oxidoreductase XC_2751 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XC_2752 PF03641 Possible lysine decarboxylase XC_2753 PF01205 Uncharacterized protein family UPF0029 XC_2754 PF00664 ABC transporter transmembrane region XC_2754 PF00005 ABC transporter XC_2755 PF03466 LysR substrate binding domain XC_2755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_2756 PF00005 ABC transporter XC_2756 PF03412 Peptidase C39 family XC_2756 PF00664 ABC transporter transmembrane region XC_2761 PF08543 Phosphomethylpyrimidine kinase XC_2762 PF01556 DnaJ C terminal domain XC_2762 PF00684 DnaJ central domain XC_2762 PF00226 DnaJ domain XC_2763 PF00012 Hsp70 protein XC_2764 PF01025 GrpE XC_2765 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding XC_2765 PF01628 HrcA protein C terminal domain XC_2766 PF02463 RecF/RecN/SMC N terminal domain XC_2767 PF01475 Ferric uptake regulator family XC_2768 PF04355 SmpA / OmlA family XC_2769 PF03658 RnfH family Ubiquitin XC_2771 PF01668 SmpB protein XC_2772 PF00082 Subtilase family XC_2779 PF05598 Transposase domain (DUF772) XC_2783 PF13276 HTH-like domain XC_2783 PF13683 Integrase core domain XC_2784 PF05598 Transposase domain (DUF772) XC_2785 PF12419 SNF2 Helicase protein XC_2785 PF00176 SNF2 family N-terminal domain XC_2785 PF00271 Helicase conserved C-terminal domain XC_2793 PF00990 Diguanylate cyclase, GGDEF domain XC_2795 PF08448 PAS fold XC_2795 PF00990 Diguanylate cyclase, GGDEF domain XC_2796 PF02321 Outer membrane efflux protein XC_2798 PF00873 AcrB/AcrD/AcrF family XC_2799 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XC_2799 PF00529 HlyD membrane-fusion protein of T1SS XC_2801 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_2801 PF03466 LysR substrate binding domain XC_2802 PF00691 OmpA family XC_2802 PF05736 OprF membrane domain XC_2803 PF03441 FAD binding domain of DNA photolyase XC_2803 PF00875 DNA photolyase XC_2804 PF03796 DnaB-like helicase C terminal domain XC_2804 PF00772 DnaB-like helicase N terminal domain XC_2805 PF03358 NADPH-dependent FMN reductase XC_2806 PF13537 Glutamine amidotransferase domain XC_2806 PF00733 Asparagine synthase XC_2807 PF02798 Glutathione S-transferase, N-terminal domain XC_2807 PF00043 Glutathione S-transferase, C-terminal domain XC_2809 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XC_2809 PF02770 Acyl-CoA dehydrogenase, middle domain XC_2809 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XC_2812 PF01026 TatD related DNase XC_2813 PF00899 ThiF family XC_2816 PF00313 'Cold-shock' DNA-binding domain XC_2818 PF02253 Phospholipase A1 XC_2819 PF00484 Carbonic anhydrase XC_2822 PF05683 Fumarase C-terminus XC_2822 PF05681 Fumarate hydratase (Fumerase) XC_2823 PF00005 ABC transporter XC_2824 PF00175 Oxidoreductase NAD-binding domain XC_2824 PF00970 Oxidoreductase FAD-binding domain XC_2825 PF00255 Glutathione peroxidase XC_2826 PF01432 Peptidase family M3 XC_2827 PF12802 MarR family XC_2832 PF00854 POT family XC_2834 PF01915 Glycosyl hydrolase family 3 C-terminal domain XC_2834 PF00933 Glycosyl hydrolase family 3 N terminal domain XC_2834 PF14310 Fibronectin type III-like domain XC_2837 PF07690 Major Facilitator Superfamily XC_2838 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XC_2838 PF00529 HlyD membrane-fusion protein of T1SS XC_2839 PF02321 Outer membrane efflux protein XC_2842 PF00521 DNA gyrase/topoisomerase IV, subunit A XC_2842 PF03989 DNA gyrase C-terminal domain, beta-propeller XC_2843 PF05724 Thiopurine S-methyltransferase (TPMT) XC_2844 PF00210 Ferritin-like domain XC_2845 PF01804 Penicillin amidase XC_2846 PF07715 TonB-dependent Receptor Plug Domain XC_2846 PF00593 TonB dependent receptor XC_2848 PF00733 Asparagine synthase XC_2848 PF13537 Glutamine amidotransferase domain XC_2851 PF07687 Peptidase dimerisation domain XC_2851 PF01546 Peptidase family M20/M25/M40 XC_2852 PF03960 ArsC family XC_2854 PF00132 Bacterial transferase hexapeptide (six repeats) XC_2854 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal XC_2854 PF14602 Hexapeptide repeat of succinyl-transferase XC_2855 PF08335 GlnD PII-uridylyltransferase XC_2855 PF01909 Nucleotidyltransferase domain XC_2855 PF01966 HD domain XC_2856 PF00557 Metallopeptidase family M24 XC_2860 PF05229 Spore Coat Protein U domain XC_2863 PF00318 Ribosomal protein S2 XC_2864 PF00889 Elongation factor TS XC_2866 PF00072 Response regulator receiver domain XC_2866 PF00990 Diguanylate cyclase, GGDEF domain XC_2867 PF00696 Amino acid kinase family XC_2868 PF01765 Ribosome recycling factor XC_2869 PF01255 Putative undecaprenyl diphosphate synthase XC_2871 PF13288 DXP reductoisomerase C-terminal domain XC_2871 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase XC_2871 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain XC_2872 PF17820 PDZ domain XC_2872 PF02163 Peptidase family M50 XC_2873 PF01103 Surface antigen XC_2873 PF07244 Surface antigen variable number repeat XC_2875 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD XC_2875 PF00132 Bacterial transferase hexapeptide (six repeats) XC_2876 PF07977 FabA-like domain XC_2877 PF00132 Bacterial transferase hexapeptide (six repeats) XC_2877 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 XC_2878 PF02684 Lipid-A-disaccharide synthetase XC_2879 PF01351 Ribonuclease HII XC_2880 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XC_2880 PF02811 PHP domain XC_2880 PF07733 Bacterial DNA polymerase III alpha NTPase domain XC_2880 PF01336 OB-fold nucleic acid binding domain XC_2880 PF14579 Helix-hairpin-helix motif XC_2881 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit XC_2887 PF03551 Transcriptional regulator PadR-like family XC_2892 PF02592 Putative vitamin uptake transporter XC_2894 PF02574 Homocysteine S-methyltransferase XC_2895 PF00324 Amino acid permease XC_2897 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XC_2899 PF00593 TonB dependent receptor XC_2899 PF07715 TonB-dependent Receptor Plug Domain XC_2900 PF01588 Putative tRNA binding domain XC_2900 PF09334 tRNA synthetases class I (M) XC_2902 PF04060 Putative Fe-S cluster XC_2905 PF04542 Sigma-70 region 2 XC_2905 PF04545 Sigma-70, region 4 XC_2914 PF01042 Endoribonuclease L-PSP XC_2916 PF03706 Lysylphosphatidylglycerol synthase TM region XC_2916 PF09924 Uncharacterised conserved protein (DUF2156) XC_2923 PF07690 Major Facilitator Superfamily XC_2924 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XC_2927 PF03831 PhnA domain XC_2927 PF08274 PhnA Zinc-Ribbon XC_2929 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XC_2934 PF04542 Sigma-70 region 2 XC_2934 PF08281 Sigma-70, region 4 XC_2936 PF01258 Prokaryotic dksA/traR C4-type zinc finger XC_2938 PF07043 Protein of unknown function (DUF1328) XC_2939 PF01863 Protein of unknown function DUF45 XC_2941 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain XC_2941 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XC_2942 PF03797 Autotransporter beta-domain XC_2942 PF00082 Subtilase family XC_2943 PF00108 Thiolase, N-terminal domain XC_2943 PF02803 Thiolase, C-terminal domain XC_2946 PF00990 Diguanylate cyclase, GGDEF domain XC_2946 PF00072 Response regulator receiver domain XC_2949 PF04675 DNA ligase N terminus XC_2949 PF01068 ATP dependent DNA ligase domain XC_2949 PF04679 ATP dependent DNA ligase C terminal region XC_2951 PF04675 DNA ligase N terminus XC_2951 PF04679 ATP dependent DNA ligase C terminal region XC_2951 PF01068 ATP dependent DNA ligase domain XC_2952 PF00270 DEAD/DEAH box helicase XC_2952 PF00271 Helicase conserved C-terminal domain XC_2952 PF08494 DEAD/H associated XC_2954 PF01494 FAD binding domain XC_2955 PF00313 'Cold-shock' DNA-binding domain XC_2956 PF01048 Phosphorylase superfamily XC_2958 PF00933 Glycosyl hydrolase family 3 N terminal domain XC_2959 PF04244 Deoxyribodipyrimidine photo-lyase-related protein XC_2960 PF01266 FAD dependent oxidoreductase XC_2960 PF05430 S-adenosyl-L-methionine-dependent methyltransferase XC_2961 PF01323 DSBA-like thioredoxin domain XC_2964 PF05958 tRNA (Uracil-5-)-methyltransferase XC_2965 PF00486 Transcriptional regulatory protein, C terminal XC_2965 PF00072 Response regulator receiver domain XC_2966 PF02565 Recombination protein O C terminal XC_2966 PF11967 Recombination protein O N terminal XC_2967 PF01926 50S ribosome-binding GTPase XC_2967 PF07650 KH domain XC_2968 PF00035 Double-stranded RNA binding motif XC_2968 PF14622 Ribonuclease-III-like XC_2970 PF10502 Signal peptidase, peptidase S26 XC_2971 PF03144 Elongation factor Tu domain 2 XC_2971 PF00009 Elongation factor Tu GTP binding domain XC_2971 PF06421 GTP-binding protein LepA C-terminus XC_2971 PF00679 Elongation factor G C-terminus XC_2972 PF13180 PDZ domain XC_2974 PF08281 Sigma-70, region 4 XC_2974 PF04542 Sigma-70 region 2 XC_2975 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XC_2975 PF00378 Enoyl-CoA hydratase/isomerase XC_2975 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XC_2976 PF01545 Cation efflux family XC_2977 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XC_2977 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XC_2978 PF00378 Enoyl-CoA hydratase/isomerase XC_2979 PF00378 Enoyl-CoA hydratase/isomerase XC_2980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XC_2980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XC_2980 PF02770 Acyl-CoA dehydrogenase, middle domain XC_2981 PF00171 Aldehyde dehydrogenase family XC_2982 PF01381 Helix-turn-helix XC_2982 PF06114 IrrE N-terminal-like domain XC_2982 PF09856 Predicted transcriptional regulator (DUF2083) XC_2984 PF07745 Glycosyl hydrolase family 53 XC_2985 PF16355 Domain of unknown function (DUF4982) XC_2985 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XC_2985 PF02837 Glycosyl hydrolases family 2, sugar binding domain XC_2985 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XC_2985 PF00703 Glycosyl hydrolases family 2 XC_2986 PF05598 Transposase domain (DUF772) XC_2991 PF14310 Fibronectin type III-like domain XC_2991 PF00933 Glycosyl hydrolase family 3 N terminal domain XC_2991 PF01915 Glycosyl hydrolase family 3 C-terminal domain XC_2993 PF05598 Transposase domain (DUF772) XC_2993 PF01609 Transposase DDE domain XC_3001 PF01464 Transglycosylase SLT domain XC_3006 PF18269 T3SS EscN ATPase C-terminal domain XC_3006 PF02874 ATP synthase alpha/beta family, beta-barrel domain XC_3006 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XC_3009 PF01514 Secretory protein of YscJ/FliF family XC_3012 PF01312 FlhB HrpN YscU SpaS Family XC_3013 PF00771 FHIPEP family XC_3016 PF00813 FliP family XC_3017 PF01313 Bacterial export proteins, family 3 XC_3023 PF03211 Pectate lyase XC_3025 PF05819 NolX protein XC_3027 PF00440 Bacterial regulatory proteins, tetR family XC_3028 PF00155 Aminotransferase class I and II XC_3032 PF03301 Tryptophan 2,3-dioxygenase XC_3035 PF05190 MutS family domain IV XC_3035 PF00488 MutS domain V XC_3035 PF05188 MutS domain II XC_3035 PF05192 MutS domain III XC_3035 PF01624 MutS domain I XC_3037 PF00141 Peroxidase XC_3038 PF01479 S4 domain XC_3039 PF01554 MatE XC_3040 PF01245 Ribosomal protein L19 XC_3041 PF01746 tRNA (Guanine-1)-methyltransferase XC_3042 PF01782 RimM N-terminal domain XC_3042 PF05239 PRC-barrel domain XC_3043 PF00886 Ribosomal protein S16 XC_3045 PF03060 Nitronate monooxygenase XC_3046 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) XC_3048 PF00448 SRP54-type protein, GTPase domain XC_3048 PF02881 SRP54-type protein, helical bundle domain XC_3048 PF02978 Signal peptide binding domain XC_3049 PF01578 Cytochrome C assembly protein XC_3050 PF01263 Aldose 1-epimerase XC_3051 PF06964 Alpha-L-arabinofuranosidase C-terminal domain XC_3052 PF03466 LysR substrate binding domain XC_3052 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_3055 PF00072 Response regulator receiver domain XC_3056 PF13426 PAS domain XC_3056 PF00072 Response regulator receiver domain XC_3056 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_3057 PF01627 Hpt domain XC_3057 PF00672 HAMP domain XC_3057 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_3057 PF00512 His Kinase A (phospho-acceptor) domain XC_3057 PF00072 Response regulator receiver domain XC_3057 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XC_3058 PF01739 CheR methyltransferase, SAM binding domain XC_3058 PF03705 CheR methyltransferase, all-alpha domain XC_3059 PF01339 CheB methylesterase XC_3060 PF13493 Domain of unknown function (DUF4118) XC_3060 PF13492 GAF domain XC_3060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_3060 PF00512 His Kinase A (phospho-acceptor) domain XC_3060 PF02702 Osmosensitive K+ channel His kinase sensor domain XC_3061 PF07237 Protein of unknown function (DUF1428) XC_3062 PF00085 Thioredoxin XC_3063 PF00593 TonB dependent receptor XC_3063 PF07715 TonB-dependent Receptor Plug Domain XC_3064 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XC_3064 PF04616 Glycosyl hydrolases family 43 XC_3067 PF13188 PAS domain XC_3067 PF08448 PAS fold XC_3067 PF00512 His Kinase A (phospho-acceptor) domain XC_3067 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_3067 PF00072 Response regulator receiver domain XC_3068 PF00672 HAMP domain XC_3068 PF01627 Hpt domain XC_3068 PF00512 His Kinase A (phospho-acceptor) domain XC_3068 PF00072 Response regulator receiver domain XC_3068 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_3068 PF17149 Periplasmic sensor domain found in signal transduction proteins XC_3070 PF13581 Histidine kinase-like ATPase domain XC_3071 PF01740 STAS domain XC_3072 PF01740 STAS domain XC_3072 PF08678 Rsbr N terminal XC_3073 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XC_3075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_3075 PF00183 Hsp90 protein XC_3076 PF12833 Helix-turn-helix domain XC_3078 PF05656 Protein of unknown function (DUF805) XC_3079 PF18073 Rubredoxin metal binding domain XC_3081 PF03626 Prokaryotic Cytochrome C oxidase subunit IV XC_3082 PF00510 Cytochrome c oxidase subunit III XC_3083 PF00115 Cytochrome C and Quinol oxidase polypeptide I XC_3084 PF06481 COX Aromatic Rich Motif XC_3084 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XC_3085 PF02401 LytB protein XC_3086 PF01252 Signal peptidase (SPase) II XC_3087 PF06827 Zinc finger found in FPG and IleRS XC_3087 PF00133 tRNA synthetases class I (I, L, M and V) XC_3087 PF08264 Anticodon-binding domain of tRNA XC_3088 PF01687 Riboflavin kinase XC_3088 PF06574 FAD synthetase XC_3089 PF03023 Lipid II flippase MurJ XC_3090 PF01649 Ribosomal protein S20 XC_3091 PF01018 GTP1/OBG XC_3091 PF01926 50S ribosome-binding GTPase XC_3092 PF01016 Ribosomal L27 protein XC_3093 PF00829 Ribosomal prokaryotic L21 protein XC_3094 PF00005 ABC transporter XC_3094 PF17755 UvrA DNA-binding domain XC_3094 PF17760 UvrA interaction domain XC_3096 PF00378 Enoyl-CoA hydratase/isomerase XC_3099 PF04542 Sigma-70 region 2 XC_3099 PF08281 Sigma-70, region 4 XC_3101 PF04377 Arginine-tRNA-protein transferase, C terminus XC_3101 PF04376 Arginine-tRNA-protein transferase, N terminus XC_3105 PF05598 Transposase domain (DUF772) XC_3106 PF02222 ATP-grasp domain XC_3106 PF01370 NAD dependent epimerase/dehydratase family XC_3112 PF00730 HhH-GPD superfamily base excision DNA repair protein XC_3117 PF00196 Bacterial regulatory proteins, luxR family XC_3117 PF00072 Response regulator receiver domain XC_3118 PF07730 Histidine kinase XC_3121 PF03775 Septum formation inhibitor MinC, C-terminal domain XC_3121 PF05209 Septum formation inhibitor MinC, N-terminal domain XC_3122 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XC_3123 PF03776 Septum formation topological specificity factor MinE XC_3125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_3125 PF00512 His Kinase A (phospho-acceptor) domain XC_3126 PF00486 Transcriptional regulatory protein, C terminal XC_3126 PF00072 Response regulator receiver domain XC_3129 PF08019 Phosphoethanolamine transferase EptA/EptB XC_3129 PF00884 Sulfatase XC_3134 PF07690 Major Facilitator Superfamily XC_3135 PF02347 Glycine cleavage system P-protein XC_3138 PF00248 Aldo/keto reductase family XC_3139 PF18011 C-terminal domain found in long catalases XC_3139 PF00199 Catalase XC_3139 PF06628 Catalase-related immune-responsive XC_3141 PF12833 Helix-turn-helix domain XC_3141 PF02311 AraC-like ligand binding domain XC_3144 PF00326 Prolyl oligopeptidase family XC_3144 PF07676 WD40-like Beta Propeller Repeat XC_3144 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XC_3146 PF03169 OPT oligopeptide transporter protein XC_3148 PF14579 Helix-hairpin-helix motif XC_3148 PF07733 Bacterial DNA polymerase III alpha NTPase domain XC_3148 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XC_3148 PF02811 PHP domain XC_3151 PF01726 LexA DNA binding domain XC_3151 PF00717 Peptidase S24-like XC_3156 PF01799 [2Fe-2S] binding domain XC_3156 PF00111 2Fe-2S iron-sulfur cluster binding domain XC_3156 PF10518 TAT (twin-arginine translocation) pathway signal sequence XC_3157 PF00941 FAD binding domain in molybdopterin dehydrogenase XC_3157 PF03450 CO dehydrogenase flavoprotein C-terminal domain XC_3158 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XC_3158 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XC_3159 PF01915 Glycosyl hydrolase family 3 C-terminal domain XC_3159 PF14310 Fibronectin type III-like domain XC_3159 PF00933 Glycosyl hydrolase family 3 N terminal domain XC_3161 PF17755 UvrA DNA-binding domain XC_3165 PF07992 Pyridine nucleotide-disulphide oxidoreductase XC_3167 PF00106 short chain dehydrogenase XC_3168 PF07971 Glycosyl hydrolase family 92 XC_3168 PF17678 Glycosyl hydrolase family 92 N-terminal domain XC_3171 PF00723 Glycosyl hydrolases family 15 XC_3173 PF01256 Carbohydrate kinase XC_3174 PF13456 Reverse transcriptase-like XC_3174 PF00300 Histidine phosphatase superfamily (branch 1) XC_3180 PF18766 SWI2/SNF2 ATPase XC_3180 PF12008 Type I restriction and modification enzyme - subunit R C terminal XC_3180 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) XC_3181 PF01420 Type I restriction modification DNA specificity domain XC_3183 PF02384 N-6 DNA Methylase XC_3192 PF01433 Peptidase family M1 domain XC_3192 PF11838 ERAP1-like C-terminal domain XC_3193 PF00709 Adenylosuccinate synthetase XC_3195 PF01145 SPFH domain / Band 7 family XC_3196 PF12221 Bacterial membrane protein N terminal XC_3196 PF01145 SPFH domain / Band 7 family XC_3197 PF00072 Response regulator receiver domain XC_3198 PF01556 DnaJ C terminal domain XC_3198 PF00226 DnaJ domain XC_3199 PF00011 Hsp20/alpha crystallin family XC_3200 PF08534 Redoxin XC_3202 PF06832 Penicillin-Binding Protein C-terminus Family XC_3202 PF00905 Penicillin binding protein transpeptidase domain XC_3202 PF00912 Transglycosylase XC_3207 PF11974 Bacterial alpha-2-macroglobulin MG3 domain XC_3207 PF00207 Alpha-2-macroglobulin family XC_3207 PF07703 Alpha-2-macroglobulin bait region domain XC_3207 PF01835 MG2 domain XC_3207 PF17962 Bacterial macroglobulin domain 6 XC_3207 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain XC_3207 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain XC_3207 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain XC_3209 PF07715 TonB-dependent Receptor Plug Domain XC_3209 PF00593 TonB dependent receptor XC_3210 PF04303 PrpF protein XC_3212 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH XC_3213 PF00694 Aconitase C-terminal domain XC_3213 PF00330 Aconitase family (aconitate hydratase) XC_3214 PF00285 Citrate synthase, C-terminal domain XC_3216 PF00158 Sigma-54 interaction domain XC_3216 PF06506 Propionate catabolism activator XC_3216 PF02954 Bacterial regulatory protein, Fis family XC_3222 PF09115 DNA polymerase III, delta subunit, C terminal XC_3223 PF02618 YceG-like family XC_3224 PF00425 chorismate binding enzyme XC_3224 PF04715 Anthranilate synthase component I, N terminal region XC_3225 PF02801 Beta-ketoacyl synthase, C-terminal domain XC_3225 PF00109 Beta-ketoacyl synthase, N-terminal domain XC_3226 PF00550 Phosphopantetheine attachment site XC_3228 PF00698 Acyl transferase domain XC_3229 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XC_3229 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XC_3230 PF01783 Ribosomal L32p protein family XC_3231 PF02620 Large ribosomal RNA subunit accumulation protein YceD XC_3232 PF02545 Maf-like protein XC_3235 PF00535 Glycosyl transferase family 2 XC_3237 PF17863 AAA lid domain XC_3237 PF07726 ATPase family associated with various cellular activities (AAA) XC_3239 PF11992 Domain of unknown function (DUF3488) XC_3239 PF01841 Transglutaminase-like superfamily XC_3239 PF13559 Domain of unknown function (DUF4129) XC_3241 PF01230 HIT domain XC_3242 PF02132 RecR protein XC_3242 PF13662 Toprim domain XC_3243 PF02575 YbaB/EbfC DNA-binding family XC_3244 PF12170 DNA polymerase III tau subunit V interacting with alpha XC_3244 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding XC_3244 PF12169 DNA polymerase III subunits gamma and tau domain III XC_3245 PF02391 MoaE protein XC_3246 PF02597 ThiS family XC_3247 PF01967 MoaC family XC_3249 PF04055 Radical SAM superfamily XC_3249 PF06463 Molybdenum Cofactor Synthesis C XC_3250 PF12706 Beta-lactamase superfamily domain XC_3250 PF00753 Metallo-beta-lactamase superfamily XC_3252 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XC_3255 PF00929 Exonuclease XC_3256 PF00075 RNase H XC_3258 PF00753 Metallo-beta-lactamase superfamily XC_3258 PF16123 Hydroxyacylglutathione hydrolase C-terminus XC_3259 PF01476 LysM domain XC_3259 PF05257 CHAP domain XC_3262 PF00216 Bacterial DNA-binding protein XC_3263 PF05362 Lon protease (S16) C-terminal proteolytic domain XC_3263 PF00004 ATPase family associated with various cellular activities (AAA) XC_3263 PF02190 ATP-dependent protease La (LON) substrate-binding domain XC_3264 PF07724 AAA domain (Cdc48 subfamily) XC_3264 PF10431 C-terminal, D2-small domain, of ClpB protein XC_3264 PF06689 ClpX C4-type zinc finger XC_3265 PF00574 Clp protease XC_3266 PF05698 Bacterial trigger factor protein (TF) C-terminus XC_3266 PF05697 Bacterial trigger factor protein (TF) XC_3268 PF00180 Isocitrate/isopropylmalate dehydrogenase XC_3270 PF00462 Glutaredoxin XC_3271 PF13181 Tetratricopeptide repeat XC_3271 PF01435 Peptidase family M48 XC_3272 PF00072 Response regulator receiver domain XC_3272 PF00486 Transcriptional regulatory protein, C terminal XC_3273 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_3273 PF00512 His Kinase A (phospho-acceptor) domain XC_3273 PF11808 Phosphate regulon sensor protein PhoR XC_3273 PF00989 PAS fold XC_3274 PF13090 Polyphosphate kinase C-terminal domain 2 XC_3274 PF13089 Polyphosphate kinase N-terminal domain XC_3274 PF02503 Polyphosphate kinase middle domain XC_3274 PF17941 Polyphosphate kinase C-terminal domain 1 XC_3275 PF02541 Ppx/GppA phosphatase family XC_3276 PF13439 Glycosyltransferase Family 4 XC_3276 PF00534 Glycosyl transferases group 1 XC_3277 PF01569 PAP2 superfamily XC_3278 PF00149 Calcineurin-like phosphoesterase XC_3281 PF04305 Protein of unknown function (DUF455) XC_3282 PF00156 Phosphoribosyl transferase domain XC_3285 PF08245 Mur ligase middle domain XC_3285 PF02875 Mur ligase family, glutamate ligase domain XC_3287 PF00300 Histidine phosphatase superfamily (branch 1) XC_3288 PF05506 Domain of unknown function (DUF756) XC_3288 PF04185 Phosphoesterase family XC_3290 PF08240 Alcohol dehydrogenase GroES-like domain XC_3290 PF00107 Zinc-binding dehydrogenase XC_3292 PF00005 ABC transporter XC_3292 PF12857 TOBE-like domain XC_3293 PF00528 Binding-protein-dependent transport system inner membrane component XC_3294 PF00528 Binding-protein-dependent transport system inner membrane component XC_3296 PF00155 Aminotransferase class I and II XC_3298 PF00849 RNA pseudouridylate synthase XC_3300 PF00691 OmpA family XC_3300 PF05736 OprF membrane domain XC_3301 PF00107 Zinc-binding dehydrogenase XC_3301 PF08240 Alcohol dehydrogenase GroES-like domain XC_3302 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XC_3302 PF07992 Pyridine nucleotide-disulphide oxidoreductase XC_3306 PF00043 Glutathione S-transferase, C-terminal domain XC_3306 PF02798 Glutathione S-transferase, N-terminal domain XC_3307 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain XC_3307 PF00056 lactate/malate dehydrogenase, NAD binding domain XC_3308 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XC_3311 PF01425 Amidase XC_3313 PF01474 Class-II DAHP synthetase family XC_3314 PF02600 Disulfide bond formation protein DsbB XC_3315 PF01196 Ribosomal protein L17 XC_3316 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain XC_3316 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain XC_3316 PF01000 RNA polymerase Rpb3/RpoA insert domain XC_3317 PF00163 Ribosomal protein S4/S9 N-terminal domain XC_3317 PF01479 S4 domain XC_3318 PF00411 Ribosomal protein S11 XC_3319 PF00416 Ribosomal protein S13/S18 XC_3320 PF00344 SecY translocase XC_3321 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A XC_3322 PF00327 Ribosomal protein L30p/L7e XC_3323 PF03719 Ribosomal protein S5, C-terminal domain XC_3323 PF00333 Ribosomal protein S5, N-terminal domain XC_3324 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast XC_3325 PF00347 Ribosomal protein L6 XC_3326 PF00410 Ribosomal protein S8 XC_3327 PF00253 Ribosomal protein S14p/S29e XC_3328 PF00673 ribosomal L5P family C-terminus XC_3328 PF00281 Ribosomal protein L5 XC_3329 PF00467 KOW motif XC_3329 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 XC_3330 PF00238 Ribosomal protein L14p/L23e XC_3331 PF00366 Ribosomal protein S17 XC_3332 PF00831 Ribosomal L29 protein XC_3333 PF00252 Ribosomal protein L16p/L10e XC_3334 PF00189 Ribosomal protein S3, C-terminal domain XC_3334 PF07650 KH domain XC_3335 PF00237 Ribosomal protein L22p/L17e XC_3336 PF00203 Ribosomal protein S19 XC_3337 PF00181 Ribosomal Proteins L2, RNA binding domain XC_3337 PF03947 Ribosomal Proteins L2, C-terminal domain XC_3338 PF00276 Ribosomal protein L23 XC_3339 PF00573 Ribosomal protein L4/L1 family XC_3340 PF00297 Ribosomal protein L3 XC_3341 PF00338 Ribosomal protein S10p/S20e XC_3342 PF00009 Elongation factor Tu GTP binding domain XC_3342 PF03143 Elongation factor Tu C-terminal domain XC_3342 PF03144 Elongation factor Tu domain 2 XC_3343 PF03764 Elongation factor G, domain IV XC_3343 PF14492 Elongation Factor G, domain II XC_3343 PF03144 Elongation factor Tu domain 2 XC_3343 PF00679 Elongation factor G C-terminus XC_3343 PF00009 Elongation factor Tu GTP binding domain XC_3344 PF00177 Ribosomal protein S7p/S5e XC_3345 PF00164 Ribosomal protein S12/S23 XC_3346 PF04983 RNA polymerase Rpb1, domain 3 XC_3346 PF04997 RNA polymerase Rpb1, domain 1 XC_3346 PF04998 RNA polymerase Rpb1, domain 5 XC_3346 PF00623 RNA polymerase Rpb1, domain 2 XC_3346 PF05000 RNA polymerase Rpb1, domain 4 XC_3347 PF04561 RNA polymerase Rpb2, domain 2 XC_3347 PF10385 RNA polymerase beta subunit external 1 domain XC_3347 PF04563 RNA polymerase beta subunit XC_3347 PF00562 RNA polymerase Rpb2, domain 6 XC_3347 PF04560 RNA polymerase Rpb2, domain 7 XC_3347 PF04565 RNA polymerase Rpb2, domain 3 XC_3348 PF00542 Ribosomal protein L7/L12 C-terminal domain XC_3348 PF16320 Ribosomal protein L7/L12 dimerisation domain XC_3349 PF00466 Ribosomal protein L10 XC_3350 PF00687 Ribosomal protein L1p/L10e family XC_3351 PF00298 Ribosomal protein L11, RNA binding domain XC_3351 PF03946 Ribosomal protein L11, N-terminal domain XC_3352 PF00467 KOW motif XC_3352 PF02357 Transcription termination factor nusG XC_3353 PF00584 SecE/Sec61-gamma subunits of protein translocation complex XC_3354 PF00009 Elongation factor Tu GTP binding domain XC_3354 PF03144 Elongation factor Tu domain 2 XC_3354 PF03143 Elongation factor Tu C-terminal domain XC_3355 PF06071 Protein of unknown function (DUF933) XC_3355 PF01926 50S ribosome-binding GTPase XC_3356 PF01195 Peptidyl-tRNA hydrolase XC_3357 PF01386 Ribosomal L25p family XC_3357 PF14693 Ribosomal protein TL5, C-terminal domain XC_3358 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase XC_3358 PF14572 Phosphoribosyl synthetase-associated domain XC_3359 PF00288 GHMP kinases N terminal domain XC_3359 PF08544 GHMP kinases C terminal XC_3360 PF03550 Outer membrane lipoprotein LolB XC_3362 PF01488 Shikimate / quinate 5-dehydrogenase XC_3362 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain XC_3362 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain XC_3363 PF00472 RF-1 domain XC_3363 PF03462 PCRF domain XC_3365 PF00994 Probable molybdopterin binding domain XC_3366 PF03976 Polyphosphate kinase 2 (PPK2) XC_3368 PF00708 Acylphosphatase XC_3369 PF08534 Redoxin XC_3370 PF03631 Virulence factor BrkB XC_3371 PF03358 NADPH-dependent FMN reductase XC_3373 PF17189 Glycosyl hydrolase family 30 beta sandwich domain XC_3373 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain XC_3375 PF04073 Aminoacyl-tRNA editing domain XC_3376 PF04151 Bacterial pre-peptidase C-terminal domain XC_3376 PF00082 Subtilase family XC_3377 PF00082 Subtilase family XC_3377 PF04151 Bacterial pre-peptidase C-terminal domain XC_3378 PF04151 Bacterial pre-peptidase C-terminal domain XC_3378 PF00082 Subtilase family XC_3379 PF00082 Subtilase family XC_3379 PF04151 Bacterial pre-peptidase C-terminal domain XC_3380 PF01063 Amino-transferase class IV XC_3390 PF00881 Nitroreductase family XC_3391 PF01612 3'-5' exonuclease XC_3391 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XC_3391 PF01367 5'-3' exonuclease, C-terminal SAM fold XC_3391 PF00476 DNA polymerase family A XC_3392 PF00293 NUDIX domain XC_3394 PF00561 alpha/beta hydrolase fold XC_3395 PF17827 PrmC N-terminal domain XC_3395 PF05175 Methyltransferase small domain XC_3396 PF00578 AhpC/TSA family XC_3396 PF10417 C-terminal domain of 1-Cys peroxiredoxin XC_3397 PF13192 Thioredoxin domain XC_3397 PF07992 Pyridine nucleotide-disulphide oxidoreductase XC_3398 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_3398 PF03466 LysR substrate binding domain XC_3399 PF01272 Transcription elongation factor, GreA/GreB, C-term XC_3399 PF03449 Transcription elongation factor, N-terminal XC_3400 PF00923 Transaldolase/Fructose-6-phosphate aldolase XC_3402 PF01625 Peptide methionine sulfoxide reductase XC_3404 PF00196 Bacterial regulatory proteins, luxR family XC_3404 PF00072 Response regulator receiver domain XC_3405 PF00672 HAMP domain XC_3405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_3405 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XC_3405 PF00072 Response regulator receiver domain XC_3405 PF01627 Hpt domain XC_3405 PF00512 His Kinase A (phospho-acceptor) domain XC_3406 PF00072 Response regulator receiver domain XC_3406 PF00990 Diguanylate cyclase, GGDEF domain XC_3409 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain XC_3409 PF00749 tRNA synthetases class I (E and Q), catalytic domain XC_3410 PF12833 Helix-turn-helix domain XC_3410 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term XC_3411 PF00892 EamA-like transporter family XC_3414 PF18125 RlmM ferredoxin-like domain XC_3414 PF01728 FtsJ-like methyltransferase XC_3415 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XC_3415 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XC_3416 PF08450 SMP-30/Gluconolactonase/LRE-like region XC_3420 PF00378 Enoyl-CoA hydratase/isomerase XC_3421 PF00171 Aldehyde dehydrogenase family XC_3422 PF00171 Aldehyde dehydrogenase family XC_3424 PF13193 AMP-binding enzyme C-terminal domain XC_3424 PF00501 AMP-binding enzyme XC_3425 PF03466 LysR substrate binding domain XC_3425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_3426 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XC_3426 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit XC_3427 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XC_3428 PF07729 FCD domain XC_3428 PF00392 Bacterial regulatory proteins, gntR family XC_3432 PF01494 FAD binding domain XC_3433 PF01494 FAD binding domain XC_3435 PF01923 Cobalamin adenosyltransferase XC_3436 PF00850 Histone deacetylase domain XC_3437 PF03968 OstA-like protein XC_3437 PF04453 LPS transport system D XC_3438 PF09312 SurA N-terminal domain XC_3438 PF00639 PPIC-type PPIASE domain XC_3439 PF04166 Pyridoxal phosphate biosynthetic protein PdxA XC_3440 PF00398 Ribosomal RNA adenine dimethylase XC_3441 PF04379 ApaG domain XC_3442 PF00149 Calcineurin-like phosphoesterase XC_3443 PF00186 Dihydrofolate reductase XC_3444 PF00303 Thymidylate synthase XC_3445 PF01790 Prolipoprotein diacylglyceryl transferase XC_3449 PF01219 Prokaryotic diacylglycerol kinase XC_3451 PF08521 Two-component sensor kinase N-terminal XC_3451 PF00512 His Kinase A (phospho-acceptor) domain XC_3451 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_3452 PF00486 Transcriptional regulatory protein, C terminal XC_3452 PF00072 Response regulator receiver domain XC_3453 PF13472 GDSL-like Lipase/Acylhydrolase family XC_3454 PF00005 ABC transporter XC_3456 PF02668 Taurine catabolism dioxygenase TauD, TfdA family XC_3458 PF00005 ABC transporter XC_3459 PF00528 Binding-protein-dependent transport system inner membrane component XC_3463 PF00593 TonB dependent receptor XC_3463 PF07715 TonB-dependent Receptor Plug Domain XC_3466 PF00248 Aldo/keto reductase family XC_3467 PF07670 Nucleoside recognition XC_3467 PF07662 Na+ dependent nucleoside transporter C-terminus XC_3467 PF01773 Na+ dependent nucleoside transporter N-terminus XC_3468 PF00294 pfkB family carbohydrate kinase XC_3468 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) XC_3469 PF01207 Dihydrouridine synthase (Dus) XC_3471 PF02772 S-adenosylmethionine synthetase, central domain XC_3471 PF00438 S-adenosylmethionine synthetase, N-terminal domain XC_3471 PF02773 S-adenosylmethionine synthetase, C-terminal domain XC_3473 PF00328 Histidine phosphatase superfamily (branch 2) XC_3475 PF00691 OmpA family XC_3475 PF01389 OmpA-like transmembrane domain XC_3479 PF00311 Phosphoenolpyruvate carboxylase XC_3482 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XC_3482 PF05221 S-adenosyl-L-homocysteine hydrolase XC_3487 PF00128 Alpha amylase, catalytic domain XC_3491 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XC_3493 PF00698 Acyl transferase domain XC_3493 PF08240 Alcohol dehydrogenase GroES-like domain XC_3493 PF00550 Phosphopantetheine attachment site XC_3493 PF02801 Beta-ketoacyl synthase, C-terminal domain XC_3493 PF00109 Beta-ketoacyl synthase, N-terminal domain XC_3493 PF14765 Polyketide synthase dehydratase XC_3493 PF08659 KR domain XC_3493 PF16197 Ketoacyl-synthetase C-terminal extension XC_3493 PF00107 Zinc-binding dehydrogenase XC_3496 PF02219 Methylenetetrahydrofolate reductase XC_3499 PF00293 NUDIX domain XC_3501 PF07517 SecA DEAD-like domain XC_3501 PF01043 SecA preprotein cross-linking domain XC_3501 PF02810 SEC-C motif XC_3501 PF07516 SecA Wing and Scaffold domain XC_3502 PF01551 Peptidase family M23 XC_3502 PF08525 Opacity-associated protein A N-terminal motif XC_3502 PF01476 LysM domain XC_3504 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase XC_3505 PF00091 Tubulin/FtsZ family, GTPase domain XC_3505 PF12327 FtsZ family, C-terminal domain XC_3506 PF02491 SHS2 domain inserted in FTSA XC_3507 PF03799 Cell division protein FtsQ XC_3507 PF08478 POTRA domain, FtsQ-type XC_3508 PF01820 D-ala D-ala ligase N-terminus XC_3508 PF07478 D-ala D-ala ligase C-terminus XC_3509 PF08245 Mur ligase middle domain XC_3509 PF02875 Mur ligase family, glutamate ligase domain XC_3509 PF01225 Mur ligase family, catalytic domain XC_3510 PF03033 Glycosyltransferase family 28 N-terminal domain XC_3510 PF04101 Glycosyltransferase family 28 C-terminal domain XC_3511 PF01098 Cell cycle protein XC_3512 PF00953 Glycosyl transferase family 4 XC_3513 PF01225 Mur ligase family, catalytic domain XC_3513 PF02875 Mur ligase family, glutamate ligase domain XC_3513 PF08245 Mur ligase middle domain XC_3514 PF01225 Mur ligase family, catalytic domain XC_3514 PF02875 Mur ligase family, glutamate ligase domain XC_3514 PF08245 Mur ligase middle domain XC_3515 PF00905 Penicillin binding protein transpeptidase domain XC_3515 PF03717 Penicillin-binding Protein dimerisation domain XC_3516 PF04999 Cell division protein FtsL XC_3517 PF01795 MraW methylase family XC_3518 PF02381 MraZ protein, putative antitoxin-like XC_3522 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XC_3524 PF02021 Uncharacterised protein family UPF0102 XC_3525 PF04307 LexA-binding, inner membrane-associated putative hydrolase XC_3526 PF02913 FAD linked oxidases, C-terminal domain XC_3526 PF01565 FAD binding domain XC_3528 PF00486 Transcriptional regulatory protein, C terminal XC_3528 PF00072 Response regulator receiver domain XC_3529 PF13493 Domain of unknown function (DUF4118) XC_3529 PF00512 His Kinase A (phospho-acceptor) domain XC_3529 PF13492 GAF domain XC_3529 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_3529 PF02702 Osmosensitive K+ channel His kinase sensor domain XC_3530 PF02669 K+-transporting ATPase, c chain XC_3532 PF03814 Potassium-transporting ATPase A subunit XC_3535 PF02769 AIR synthase related protein, C-terminal domain XC_3535 PF00586 AIR synthase related protein, N-terminal domain XC_3536 PF01029 NusB family XC_3537 PF00885 6,7-dimethyl-8-ribityllumazine synthase XC_3538 PF00925 GTP cyclohydrolase II XC_3538 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase XC_3539 PF00677 Lumazine binding domain XC_3541 PF01872 RibD C-terminal domain XC_3541 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region XC_3543 PF03477 ATP cone domain XC_3544 PF00464 Serine hydroxymethyltransferase XC_3546 PF12848 ABC transporter XC_3546 PF00005 ABC transporter XC_3547 PF01327 Polypeptide deformylase XC_3548 PF03960 ArsC family XC_3551 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) XC_3552 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family XC_3552 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain XC_3559 PF07715 TonB-dependent Receptor Plug Domain XC_3559 PF00593 TonB dependent receptor XC_3561 PF00392 Bacterial regulatory proteins, gntR family XC_3561 PF07702 UTRA domain XC_3563 PF00263 Bacterial type II and III secretion system protein XC_3563 PF03958 Bacterial type II/III secretion system short domain XC_3565 PF10741 Type II secretion system (T2SS), protein M subtype b XC_3566 PF05137 Fimbrial assembly protein (PilN) XC_3567 PF03934 Type II secretion system (T2SS), protein K XC_3569 PF07963 Prokaryotic N-terminal methylation motif XC_3570 PF12019 Type II transport protein GspH XC_3571 PF08334 Type II secretion system (T2SS), protein G XC_3572 PF00482 Type II secretion system (T2SS), protein F XC_3573 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XC_3573 PF00437 Type II/IV secretion system protein XC_3575 PF00082 Subtilase family XC_3575 PF04151 Bacterial pre-peptidase C-terminal domain XC_3576 PF13018 Extended Signal Peptide of Type V secretion system XC_3576 PF05662 Coiled stalk of trimeric autotransporter adhesin XC_3576 PF05658 Head domain of trimeric autotransporter adhesin XC_3576 PF03895 YadA-like membrane anchor domain XC_3578 PF02769 AIR synthase related protein, C-terminal domain XC_3578 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain XC_3578 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal XC_3579 PF10411 Disulfide bond isomerase protein N-terminus XC_3579 PF13098 Thioredoxin-like domain XC_3580 PF00589 Phage integrase family XC_3580 PF02899 Phage integrase, N-terminal SAM-like domain XC_3583 PF03739 Lipopolysaccharide export system permease LptF/LptG XC_3585 PF00883 Cytosol aminopeptidase family, catalytic domain XC_3585 PF02789 Cytosol aminopeptidase family, N-terminal domain XC_3588 PF00133 tRNA synthetases class I (I, L, M and V) XC_3588 PF10458 Valyl tRNA synthetase tRNA binding arm XC_3588 PF08264 Anticodon-binding domain of tRNA XC_3590 PF00544 Pectate lyase XC_3591 PF00544 Pectate lyase XC_3594 PF01066 CDP-alcohol phosphatidyltransferase XC_3596 PF04073 Aminoacyl-tRNA editing domain XC_3596 PF03129 Anticodon binding domain XC_3596 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XC_3597 PF00816 H-NS histone family XC_3599 PF02405 Permease MlaE XC_3600 PF00005 ABC transporter XC_3601 PF03886 ABC-type transport auxiliary lipoprotein component XC_3601 PF02470 MlaD protein XC_3605 PF05045 Rhamnan synthesis protein F XC_3605 PF14307 Glycosyltransferase WbsX XC_3606 PF01144 Coenzyme A transferase XC_3607 PF01144 Coenzyme A transferase XC_3608 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XC_3608 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XC_3608 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XC_3608 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XC_3609 PF01050 Mannose-6-phosphate isomerase XC_3609 PF00483 Nucleotidyl transferase XC_3610 PF04321 RmlD substrate binding domain XC_3611 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase XC_3612 PF00483 Nucleotidyl transferase XC_3613 PF16363 GDP-mannose 4,6 dehydratase XC_3614 PF01012 Electron transfer flavoprotein domain XC_3615 PF01012 Electron transfer flavoprotein domain XC_3615 PF00766 Electron transfer flavoprotein FAD-binding domain XC_3616 PF01050 Mannose-6-phosphate isomerase XC_3616 PF00483 Nucleotidyl transferase XC_3617 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XC_3618 PF00535 Glycosyl transferase family 2 XC_3622 PF01527 Transposase XC_3623 PF01527 Transposase XC_3624 PF13276 HTH-like domain XC_3624 PF13683 Integrase core domain XC_3625 PF05598 Transposase domain (DUF772) XC_3625 PF01609 Transposase DDE domain XC_3626 PF16363 GDP-mannose 4,6 dehydratase XC_3627 PF16363 GDP-mannose 4,6 dehydratase XC_3630 PF00534 Glycosyl transferases group 1 XC_3630 PF13439 Glycosyltransferase Family 4 XC_3631 PF00069 Protein kinase domain XC_3631 PF13847 Methyltransferase domain XC_3632 PF00005 ABC transporter XC_3635 PF01053 Cys/Met metabolism PLP-dependent enzyme XC_3636 PF00291 Pyridoxal-phosphate dependent enzyme XC_3636 PF00571 CBS domain XC_3640 PF00437 Type II/IV secretion system protein XC_3641 PF14497 Glutathione S-transferase, C-terminal domain XC_3641 PF02798 Glutathione S-transferase, N-terminal domain XC_3643 PF00271 Helicase conserved C-terminal domain XC_3643 PF00270 DEAD/DEAH box helicase XC_3644 PF01242 6-pyruvoyl tetrahydropterin synthase XC_3647 PF13185 GAF domain XC_3649 PF13419 Haloacid dehalogenase-like hydrolase XC_3650 PF11798 IMS family HHH motif XC_3650 PF11799 impB/mucB/samB family C-terminal domain XC_3650 PF00817 impB/mucB/samB family XC_3651 PF07977 FabA-like domain XC_3652 PF02801 Beta-ketoacyl synthase, C-terminal domain XC_3652 PF00109 Beta-ketoacyl synthase, N-terminal domain XC_3653 PF01432 Peptidase family M3 XC_3655 PF00291 Pyridoxal-phosphate dependent enzyme XC_3656 PF00394 Multicopper oxidase XC_3656 PF07731 Multicopper oxidase XC_3656 PF07732 Multicopper oxidase XC_3657 PF05275 Copper resistance protein B precursor (CopB) XC_3658 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XC_3663 PF01380 SIS domain XC_3664 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XC_3665 PF00005 ABC transporter XC_3666 PF12704 MacB-like periplasmic core domain XC_3666 PF00005 ABC transporter XC_3666 PF02687 FtsX-like permease family XC_3667 PF12704 MacB-like periplasmic core domain XC_3667 PF02687 FtsX-like permease family XC_3667 PF00005 ABC transporter XC_3669 PF00158 Sigma-54 interaction domain XC_3669 PF00072 Response regulator receiver domain XC_3669 PF02954 Bacterial regulatory protein, Fis family XC_3670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_3670 PF00512 His Kinase A (phospho-acceptor) domain XC_3670 PF00672 HAMP domain XC_3671 PF01527 Transposase XC_3672 PF13276 HTH-like domain XC_3672 PF13683 Integrase core domain XC_3674 PF12804 MobA-like NTP transferase domain XC_3674 PF00132 Bacterial transferase hexapeptide (six repeats) XC_3674 PF14602 Hexapeptide repeat of succinyl-transferase XC_3677 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain XC_3677 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain XC_3678 PF02874 ATP synthase alpha/beta family, beta-barrel domain XC_3678 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XC_3679 PF00231 ATP synthase XC_3680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XC_3680 PF00306 ATP synthase alpha/beta chain, C terminal domain XC_3680 PF02874 ATP synthase alpha/beta family, beta-barrel domain XC_3681 PF00213 ATP synthase delta (OSCP) subunit XC_3682 PF00430 ATP synthase B/B' CF(0) XC_3683 PF00137 ATP synthase subunit C XC_3684 PF00119 ATP synthase A chain XC_3687 PF01979 Amidohydrolase family XC_3689 PF02817 e3 binding domain XC_3689 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XC_3689 PF00364 Biotin-requiring enzyme XC_3691 PF02817 e3 binding domain XC_3691 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XC_3691 PF00364 Biotin-requiring enzyme XC_3698 PF05598 Transposase domain (DUF772) XC_3699 PF03180 NLPA lipoprotein XC_3700 PF00528 Binding-protein-dependent transport system inner membrane component XC_3701 PF09383 NIL domain XC_3701 PF00005 ABC transporter XC_3702 PF00892 EamA-like transporter family XC_3703 PF04461 Protein of unknown function (DUF520) XC_3708 PF13419 Haloacid dehalogenase-like hydrolase XC_3709 PF01479 S4 domain XC_3709 PF00849 RNA pseudouridylate synthase XC_3710 PF08468 Methyltransferase small domain N-terminal XC_3710 PF05175 Methyltransferase small domain XC_3712 PF07995 Glucose / Sorbosone dehydrogenase XC_3714 PF18698 Histidine kinase sensor domain XC_3714 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_3714 PF00672 HAMP domain XC_3714 PF00989 PAS fold XC_3714 PF00512 His Kinase A (phospho-acceptor) domain XC_3718 PF00842 Alanine racemase, C-terminal domain XC_3718 PF01168 Alanine racemase, N-terminal domain XC_3719 PF01266 FAD dependent oxidoreductase XC_3720 PF01037 Lrp/AsnC ligand binding domain XC_3722 PF01641 SelR domain XC_3724 PF01618 MotA/TolQ/ExbB proton channel family XC_3725 PF13677 Membrane MotB of proton-channel complex MotA/MotB XC_3725 PF00691 OmpA family XC_3730 PF01061 ABC-2 type transporter XC_3731 PF00005 ABC transporter XC_3732 PF00999 Sodium/hydrogen exchanger family XC_3733 PF03795 YCII-related domain XC_3734 PF02469 Fasciclin domain XC_3735 PF03167 Uracil DNA glycosylase superfamily XC_3737 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XC_3738 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_3738 PF03466 LysR substrate binding domain XC_3739 PF03358 NADPH-dependent FMN reductase XC_3740 PF00248 Aldo/keto reductase family XC_3742 PF05649 Peptidase family M13 XC_3742 PF01431 Peptidase family M13 XC_3745 PF13520 Amino acid permease XC_3747 PF04397 LytTr DNA-binding domain XC_3747 PF00072 Response regulator receiver domain XC_3748 PF02743 Cache domain XC_3748 PF00672 HAMP domain XC_3748 PF06580 Histidine kinase XC_3748 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_3751 PF00857 Isochorismatase family XC_3752 PF05974 Domain of unknown function (DUF892) XC_3753 PF05974 Domain of unknown function (DUF892) XC_3754 PF05067 Manganese containing catalase XC_3757 PF01339 CheB methylesterase XC_3757 PF08448 PAS fold XC_3757 PF01739 CheR methyltransferase, SAM binding domain XC_3757 PF03705 CheR methyltransferase, all-alpha domain XC_3760 PF02954 Bacterial regulatory protein, Fis family XC_3760 PF00072 Response regulator receiver domain XC_3760 PF00158 Sigma-54 interaction domain XC_3762 PF01654 Cytochrome bd terminal oxidase subunit I XC_3763 PF02322 Cytochrome bd terminal oxidase subunit II XC_3767 PF16363 GDP-mannose 4,6 dehydratase XC_3769 PF03275 UDP-galactopyranose mutase XC_3771 PF00005 ABC transporter XC_3771 PF00664 ABC transporter transmembrane region XC_3774 PF00107 Zinc-binding dehydrogenase XC_3774 PF08240 Alcohol dehydrogenase GroES-like domain XC_3774 PF13823 Alcohol dehydrogenase GroES-associated XC_3780 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XC_3780 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XC_3785 PF07715 TonB-dependent Receptor Plug Domain XC_3785 PF00593 TonB dependent receptor XC_3788 PF00005 ABC transporter XC_3790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_3790 PF03466 LysR substrate binding domain XC_3791 PF01042 Endoribonuclease L-PSP XC_3795 PF00248 Aldo/keto reductase family XC_3796 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_3796 PF03466 LysR substrate binding domain XC_3800 PF00360 Phytochrome region XC_3800 PF00563 EAL domain XC_3800 PF01590 GAF domain XC_3800 PF00990 Diguanylate cyclase, GGDEF domain XC_3803 PF01527 Transposase XC_3804 PF00665 Integrase core domain XC_3804 PF13333 Integrase core domain XC_3804 PF13276 HTH-like domain XC_3806 PF03979 Sigma-70 factor, region 1.1 XC_3806 PF04546 Sigma-70, non-essential region XC_3806 PF00140 Sigma-70 factor, region 1.2 XC_3806 PF04545 Sigma-70, region 4 XC_3806 PF04539 Sigma-70 region 3 XC_3806 PF04542 Sigma-70 region 2 XC_3807 PF02580 D-Tyr-tRNA(Tyr) deacylase XC_3808 PF03279 Bacterial lipid A biosynthesis acyltransferase XC_3810 PF00925 GTP cyclohydrolase II XC_3814 PF00535 Glycosyl transferase family 2 XC_3817 PF01189 16S rRNA methyltransferase RsmB/F XC_3817 PF01029 NusB family XC_3818 PF00551 Formyl transferase XC_3818 PF02911 Formyl transferase, C-terminal domain XC_3819 PF01327 Polypeptide deformylase XC_3820 PF01476 LysM domain XC_3821 PF02481 DNA recombination-mediator protein A XC_3821 PF17782 DprA winged helix domain XC_3822 PF04361 Protein of unknown function (DUF494) XC_3823 PF07963 Prokaryotic N-terminal methylation motif XC_3823 PF00114 Pilin (bacterial filament) XC_3825 PF13368 Topoisomerase C-terminal repeat XC_3825 PF01751 Toprim domain XC_3825 PF01131 DNA topoisomerase XC_3826 PF01300 Telomere recombination XC_3829 PF00563 EAL domain XC_3829 PF00360 Phytochrome region XC_3829 PF00990 Diguanylate cyclase, GGDEF domain XC_3829 PF01590 GAF domain XC_3832 PF01343 Peptidase family S49 XC_3833 PF01554 MatE XC_3836 PF18074 Primosomal protein N C-terminal domain XC_3836 PF17764 3′ DNA-binding domain (3′BD) XC_3836 PF00271 Helicase conserved C-terminal domain XC_3836 PF00270 DEAD/DEAH box helicase XC_3836 PF18319 PriA DNA helicase Cys-rich region (CRR) domain XC_3837 PF00043 Glutathione S-transferase, C-terminal domain XC_3837 PF13417 Glutathione S-transferase, N-terminal domain XC_3838 PF00270 DEAD/DEAH box helicase XC_3838 PF00271 Helicase conserved C-terminal domain XC_3838 PF18074 Primosomal protein N C-terminal domain XC_3838 PF18319 PriA DNA helicase Cys-rich region (CRR) domain XC_3838 PF17764 3′ DNA-binding domain (3′BD) XC_3841 PF07992 Pyridine nucleotide-disulphide oxidoreductase XC_3842 PF03458 UPF0126 domain XC_3843 PF04545 Sigma-70, region 4 XC_3843 PF04542 Sigma-70 region 2 XC_3844 PF03167 Uracil DNA glycosylase superfamily XC_3845 PF00072 Response regulator receiver domain XC_3846 PF18075 FtsX extracellular domain XC_3847 PF00005 ABC transporter XC_3848 PF00271 Helicase conserved C-terminal domain XC_3848 PF00270 DEAD/DEAH box helicase XC_3848 PF12300 ATP-dependent RNA helicase RhlB XC_3849 PF00085 Thioredoxin XC_3850 PF07498 Rho termination factor, N-terminal domain XC_3850 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XC_3850 PF07497 Rho termination factor, RNA-binding domain XC_3852 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) XC_3853 PF03466 LysR substrate binding domain XC_3853 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_3854 PF03971 Monomeric isocitrate dehydrogenase XC_3857 PF14489 QueF-like protein XC_3857 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term XC_3859 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XC_3860 PF00873 AcrB/AcrD/AcrF family XC_3861 PF00873 AcrB/AcrD/AcrF family XC_3864 PF08281 Sigma-70, region 4 XC_3864 PF04542 Sigma-70 region 2 XC_3865 PF07063 Domain of unknown function (DUF1338) XC_3873 PF01427 D-ala-D-ala dipeptidase XC_3874 PF01471 Putative peptidoglycan binding domain XC_3877 PF01510 N-acetylmuramoyl-L-alanine amidase XC_3879 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XC_3879 PF13378 Enolase C-terminal domain-like XC_3881 PF13520 Amino acid permease XC_3884 PF05360 yiaA/B two helix domain XC_3885 PF07995 Glucose / Sorbosone dehydrogenase XC_3886 PF00933 Glycosyl hydrolase family 3 N terminal domain XC_3886 PF14310 Fibronectin type III-like domain XC_3886 PF01915 Glycosyl hydrolase family 3 C-terminal domain XC_3887 PF02152 Dihydroneopterin aldolase XC_3888 PF00814 Glycoprotease family XC_3889 PF01165 Ribosomal protein S21 XC_3890 PF09424 Yqey-like protein XC_3891 PF03631 Virulence factor BrkB XC_3892 PF08278 DNA primase DnaG DnaB-binding XC_3892 PF01807 CHC2 zinc finger XC_3892 PF08275 DNA primase catalytic core, N-terminal domain XC_3892 PF10410 DnaB-helicase binding domain of primase XC_3894 PF13593 SBF-like CPA transporter family (DUF4137) XC_3895 PF11412 Disulphide bond corrector protein DsbC XC_3895 PF02683 Cytochrome C biogenesis protein transmembrane region XC_3896 PF01040 UbiA prenyltransferase family XC_3901 PF00510 Cytochrome c oxidase subunit III XC_3902 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 XC_3904 PF00115 Cytochrome C and Quinol oxidase polypeptide I XC_3905 PF02790 Cytochrome C oxidase subunit II, transmembrane domain XC_3905 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XC_3907 PF14850 DNA-binding domain of Proline dehydrogenase XC_3907 PF18327 Proline utilization A proline dehydrogenase N-terminal domain XC_3907 PF00171 Aldehyde dehydrogenase family XC_3907 PF01619 Proline dehydrogenase XC_3908 PF05598 Transposase domain (DUF772) XC_3914 PF13683 Integrase core domain XC_3914 PF13276 HTH-like domain XC_3915 PF01527 Transposase XC_3917 PF13276 HTH-like domain XC_3917 PF13683 Integrase core domain XC_3918 PF01527 Transposase XC_3920 PF13333 Integrase core domain XC_3920 PF00665 Integrase core domain XC_3920 PF13276 HTH-like domain XC_3921 PF01527 Transposase XC_3923 PF05598 Transposase domain (DUF772) XC_3923 PF01609 Transposase DDE domain XC_3924 PF05598 Transposase domain (DUF772) XC_3925 PF00579 tRNA synthetases class I (W and Y) XC_3926 PF04225 Opacity-associated protein A LysM-like domain XC_3926 PF01551 Peptidase family M23 XC_3927 PF03702 Anhydro-N-acetylmuramic acid kinase XC_3929 PF07690 Major Facilitator Superfamily XC_3930 PF03372 Endonuclease/Exonuclease/phosphatase family XC_3931 PF00156 Phosphoribosyl transferase domain XC_3933 PF13614 AAA domain XC_3934 PF17762 HTH domain found in ParB protein XC_3934 PF02195 ParB-like nuclease domain XC_3937 PF01370 NAD dependent epimerase/dehydratase family XC_3938 PF00535 Glycosyl transferase family 2 XC_3941 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XC_3941 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XC_3941 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XC_3941 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XC_3942 PF00692 dUTPase XC_3943 PF04127 DNA / pantothenate metabolism flavoprotein XC_3943 PF02441 Flavoprotein XC_3944 PF04002 RadC-like JAB domain XC_3945 PF00750 tRNA synthetases class I (R) XC_3945 PF05746 DALR anticodon binding domain XC_3945 PF03485 Arginyl tRNA synthetase N terminal domain XC_3948 PF00106 short chain dehydrogenase XC_3949 PF01757 Acyltransferase family XC_3951 PF03033 Glycosyltransferase family 28 N-terminal domain XC_3952 PF13193 AMP-binding enzyme C-terminal domain XC_3952 PF00501 AMP-binding enzyme XC_3952 PF00668 Condensation domain XC_3952 PF00550 Phosphopantetheine attachment site XC_3952 PF00975 Thioesterase domain XC_3953 PF17944 Arginine decarboxylase C-terminal helical extension XC_3953 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XC_3953 PF17810 Arginine decarboxylase helical bundle domain XC_3954 PF17284 Spermidine synthase tetramerisation domain XC_3957 PF00543 Nitrogen regulatory protein P-II XC_3958 PF04380 Membrane fusogenic activity XC_3959 PF13335 Magnesium chelatase, subunit ChlI C-terminal XC_3959 PF01078 Magnesium chelatase, subunit ChlI XC_3962 PF12792 CSS motif domain associated with EAL XC_3962 PF00563 EAL domain XC_3964 PF00487 Fatty acid desaturase XC_3965 PF00970 Oxidoreductase FAD-binding domain XC_3965 PF00175 Oxidoreductase NAD-binding domain XC_3965 PF00111 2Fe-2S iron-sulfur cluster binding domain XC_3966 PF00440 Bacterial regulatory proteins, tetR family XC_3970 PF01139 tRNA-splicing ligase RtcB XC_3978 PF08338 Domain of unknown function (DUF1731) XC_3978 PF01370 NAD dependent epimerase/dehydratase family XC_3979 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XC_3979 PF07992 Pyridine nucleotide-disulphide oxidoreductase XC_3981 PF00072 Response regulator receiver domain XC_3981 PF00486 Transcriptional regulatory protein, C terminal XC_3982 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_3982 PF08521 Two-component sensor kinase N-terminal XC_3982 PF00512 His Kinase A (phospho-acceptor) domain XC_3986 PF00595 PDZ domain XC_3990 PF01594 AI-2E family transporter XC_3991 PF13419 Haloacid dehalogenase-like hydrolase XC_3992 PF00883 Cytosol aminopeptidase family, catalytic domain XC_3992 PF02789 Cytosol aminopeptidase family, N-terminal domain XC_3997 PF00196 Bacterial regulatory proteins, luxR family XC_3997 PF00072 Response regulator receiver domain XC_3998 PF07730 Histidine kinase XC_3999 PF13533 Biotin-lipoyl like XC_4000 PF00005 ABC transporter XC_4004 PF00892 EamA-like transporter family XC_4005 PF00892 EamA-like transporter family XC_4010 PF00753 Metallo-beta-lactamase superfamily XC_4011 PF00579 tRNA synthetases class I (W and Y) XC_4012 PF05532 CsbD-like XC_4015 PF00491 Arginase family XC_4020 PF02223 Thymidylate kinase XC_4021 PF02311 AraC-like ligand binding domain XC_4021 PF12833 Helix-turn-helix domain XC_4025 PF03309 Type III pantothenate kinase XC_4026 PF02237 Biotin protein ligase C terminal domain XC_4026 PF08279 HTH domain XC_4026 PF03099 Biotin/lipoate A/B protein ligase family XC_4027 PF06167 Glucose-regulated metallo-peptidase M90 XC_4030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_4030 PF00672 HAMP domain XC_4030 PF00512 His Kinase A (phospho-acceptor) domain XC_4031 PF00072 Response regulator receiver domain XC_4031 PF00486 Transcriptional regulatory protein, C terminal XC_4033 PF01207 Dihydrouridine synthase (Dus) XC_4037 PF06628 Catalase-related immune-responsive XC_4037 PF00199 Catalase XC_4038 PF06733 DEAD_2 XC_4038 PF13307 Helicase C-terminal domain XC_4041 PF18317 Shikimate 5'-dehydrogenase C-terminal domain XC_4041 PF01488 Shikimate / quinate 5-dehydrogenase XC_4041 PF08501 Shikimate dehydrogenase substrate binding domain XC_4044 PF00175 Oxidoreductase NAD-binding domain XC_4044 PF00667 FAD binding domain XC_4044 PF00258 Flavodoxin XC_4045 PF00490 Delta-aminolevulinic acid dehydratase XC_4051 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XC_4051 PF00326 Prolyl oligopeptidase family XC_4052 PF02798 Glutathione S-transferase, N-terminal domain XC_4052 PF00043 Glutathione S-transferase, C-terminal domain XC_4059 PF00005 ABC transporter XC_4061 PF01381 Helix-turn-helix XC_4063 PF02583 Metal-sensitive transcriptional repressor XC_4064 PF01545 Cation efflux family XC_4065 PF01229 Glycosyl hydrolases family 39 XC_4066 PF00005 ABC transporter XC_4067 PF00175 Oxidoreductase NAD-binding domain XC_4067 PF01383 CpcD/allophycocyanin linker domain XC_4068 PF01061 ABC-2 type transporter XC_4070 PF02558 Ketopantoate reductase PanE/ApbA XC_4070 PF08546 Ketopantoate reductase PanE/ApbA C terminal XC_4072 PF03061 Thioesterase superfamily XC_4075 PF00268 Ribonucleotide reductase, small chain XC_4076 PF00317 Ribonucleotide reductase, all-alpha domain XC_4076 PF02867 Ribonucleotide reductase, barrel domain XC_4076 PF03477 ATP cone domain XC_4078 PF00583 Acetyltransferase (GNAT) family XC_4078 PF13380 CoA binding domain XC_4078 PF13607 Succinyl-CoA ligase like flavodoxin domain XC_4079 PF00571 CBS domain XC_4079 PF01769 Divalent cation transporter XC_4079 PF03448 MgtE intracellular N domain XC_4080 PF00194 Eukaryotic-type carbonic anhydrase XC_4081 PF02254 TrkA-N domain XC_4081 PF00999 Sodium/hydrogen exchanger family XC_4082 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XC_4082 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XC_4083 PF00723 Glycosyl hydrolases family 15 XC_4084 PF01451 Low molecular weight phosphotyrosine protein phosphatase XC_4086 PF05166 YcgL domain XC_4087 PF02801 Beta-ketoacyl synthase, C-terminal domain XC_4087 PF00109 Beta-ketoacyl synthase, N-terminal domain XC_4089 PF00535 Glycosyl transferase family 2 XC_4090 PF04820 Tryptophan halogenase XC_4098 PF07977 FabA-like domain XC_4101 PF00550 Phosphopantetheine attachment site XC_4102 PF04820 Tryptophan halogenase XC_4108 PF01218 Coproporphyrinogen III oxidase XC_4109 PF01612 3'-5' exonuclease XC_4109 PF00476 DNA polymerase family A XC_4109 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XC_4109 PF01367 5'-3' exonuclease, C-terminal SAM fold XC_4114 PF14602 Hexapeptide repeat of succinyl-transferase XC_4114 PF12464 Maltose acetyltransferase XC_4115 PF13361 UvrD-like helicase C-terminal domain XC_4115 PF00580 UvrD/REP helicase N-terminal domain XC_4117 PF13091 PLD-like domain XC_4117 PF13396 Phospholipase_D-nuclease N-terminal XC_4118 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_4118 PF03466 LysR substrate binding domain XC_4119 PF03737 Aldolase/RraA XC_4120 PF04303 PrpF protein XC_4121 PF04909 Amidohydrolase XC_4122 PF00471 Ribosomal protein L33 XC_4123 PF00830 Ribosomal L28 family XC_4125 PF00873 AcrB/AcrD/AcrF family XC_4126 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XC_4126 PF00529 HlyD membrane-fusion protein of T1SS XC_4130 PF02527 rRNA small subunit methyltransferase G XC_4131 PF09423 PhoD-like phosphatase XC_4131 PF16655 PhoD-like phosphatase, N-terminal domain XC_4132 PF01648 4'-phosphopantetheinyl transferase superfamily XC_4133 PF04226 Transglycosylase associated protein XC_4142 PF00480 ROK family XC_4144 PF00639 PPIC-type PPIASE domain XC_4146 PF00474 Sodium:solute symporter family XC_4147 PF04341 Protein of unknown function, DUF485 XC_4149 PF16177 Acetyl-coenzyme A synthetase N-terminus XC_4149 PF00501 AMP-binding enzyme XC_4149 PF13193 AMP-binding enzyme C-terminal domain XC_4150 PF00196 Bacterial regulatory proteins, luxR family XC_4150 PF00072 Response regulator receiver domain XC_4154 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XC_4154 PF04616 Glycosyl hydrolases family 43 XC_4155 PF00248 Aldo/keto reductase family XC_4158 PF01557 Fumarylacetoacetate (FAA) hydrolase family XC_4159 PF13378 Enolase C-terminal domain-like XC_4159 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XC_4160 PF05336 L-rhamnose mutarotase XC_4161 PF07690 Major Facilitator Superfamily XC_4162 PF09339 IclR helix-turn-helix domain XC_4162 PF01614 Bacterial transcriptional regulator XC_4166 PF02659 Putative manganese efflux pump XC_4167 PF00072 Response regulator receiver domain XC_4167 PF09456 RcsC Alpha-Beta-Loop (ABL) XC_4167 PF00512 His Kinase A (phospho-acceptor) domain XC_4167 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_4168 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain XC_4168 PF06165 Glycosyltransferase family 36 XC_4171 PF13570 PQQ-like domain XC_4171 PF13360 PQQ-like domain XC_4171 PF01011 PQQ enzyme repeat XC_4175 PF04357 TamB, inner membrane protein subunit of TAM complex XC_4176 PF01103 Surface antigen XC_4176 PF17243 POTRA domain TamA domain 1 XC_4177 PF05746 DALR anticodon binding domain XC_4177 PF02092 Glycyl-tRNA synthetase beta subunit XC_4178 PF02091 Glycyl-tRNA synthetase alpha subunit XC_4179 PF00437 Type II/IV secretion system protein XC_4180 PF00117 Glutamine amidotransferase class-I XC_4180 PF00958 GMP synthase C terminal domain XC_4182 PF00902 Sec-independent protein translocase protein (TatC) XC_4183 PF02416 mttA/Hcf106 family XC_4184 PF02416 mttA/Hcf106 family XC_4186 PF00762 Ferrochelatase XC_4187 PF12697 Alpha/beta hydrolase family XC_4189 PF04381 Putative exonuclease, RdgC XC_4190 PF01171 PP-loop family XC_4192 PF00356 Bacterial regulatory proteins, lacI family XC_4193 PF03648 Glycosyl hydrolase family 67 N-terminus XC_4193 PF07488 Glycosyl hydrolase family 67 middle domain XC_4193 PF07477 Glycosyl hydrolase family 67 C-terminus XC_4195 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XC_4195 PF13378 Enolase C-terminal domain-like XC_4196 PF04616 Glycosyl hydrolases family 43 XC_4196 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XC_4197 PF01915 Glycosyl hydrolase family 3 C-terminal domain XC_4197 PF07691 PA14 domain XC_4197 PF00933 Glycosyl hydrolase family 3 N terminal domain XC_4197 PF14310 Fibronectin type III-like domain XC_4198 PF08125 Mannitol dehydrogenase C-terminal domain XC_4198 PF01232 Mannitol dehydrogenase Rossmann domain XC_4205 PF08450 SMP-30/Gluconolactonase/LRE-like region XC_4207 PF00331 Glycosyl hydrolase family 10 XC_4208 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XC_4208 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XC_4208 PF16355 Domain of unknown function (DUF4982) XC_4208 PF00703 Glycosyl hydrolases family 2 XC_4208 PF02837 Glycosyl hydrolases family 2, sugar binding domain XC_4209 PF02614 Glucuronate isomerase XC_4210 PF03422 Carbohydrate binding module (family 6) XC_4210 PF00553 Cellulose binding domain XC_4210 PF00331 Glycosyl hydrolase family 10 XC_4214 PF04616 Glycosyl hydrolases family 43 XC_4219 PF00109 Beta-ketoacyl synthase, N-terminal domain XC_4219 PF08240 Alcohol dehydrogenase GroES-like domain XC_4219 PF02801 Beta-ketoacyl synthase, C-terminal domain XC_4219 PF16197 Ketoacyl-synthetase C-terminal extension XC_4219 PF08659 KR domain XC_4219 PF00550 Phosphopantetheine attachment site XC_4219 PF00107 Zinc-binding dehydrogenase XC_4219 PF14765 Polyketide synthase dehydratase XC_4219 PF00698 Acyl transferase domain XC_4220 PF01553 Acyltransferase XC_4222 PF00356 Bacterial regulatory proteins, lacI family XC_4225 PF04820 Tryptophan halogenase XC_4226 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family XC_4227 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) XC_4228 PF04337 Protein of unknown function, DUF480 XC_4230 PF13302 Acetyltransferase (GNAT) domain XC_4231 PF13361 UvrD-like helicase C-terminal domain XC_4231 PF00580 UvrD/REP helicase N-terminal domain XC_4232 PF01527 Transposase XC_4233 PF13333 Integrase core domain XC_4233 PF00665 Integrase core domain XC_4233 PF13276 HTH-like domain XC_4234 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) XC_4235 PF00265 Thymidine kinase XC_4236 PF00360 Phytochrome region XC_4236 PF08446 PAS fold XC_4236 PF00512 His Kinase A (phospho-acceptor) domain XC_4236 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XC_4236 PF01590 GAF domain XC_4237 PF04349 Periplasmic glucan biosynthesis protein, MdoG XC_4239 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XC_4239 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XC_4239 PF06827 Zinc finger found in FPG and IleRS XC_4240 PF03594 Benzoate membrane transport protein XC_4241 PF13426 PAS domain XC_4241 PF08446 PAS fold XC_4241 PF01590 GAF domain XC_4241 PF00360 Phytochrome region XC_4242 PF01126 Heme oxygenase XC_4243 PF07690 Major Facilitator Superfamily XC_4244 PF01263 Aldose 1-epimerase XC_4246 PF02810 SEC-C motif XC_4248 PF01925 Sulfite exporter TauE/SafE XC_4249 PF00593 TonB dependent receptor XC_4249 PF07715 TonB-dependent Receptor Plug Domain XC_4253 PF01227 GTP cyclohydrolase I XC_4255 PF07869 Protein of unknown function (DUF1656) XC_4256 PF00529 HlyD membrane-fusion protein of T1SS XC_4256 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XC_4257 PF02321 Outer membrane efflux protein XC_4258 PF04632 Fusaric acid resistance protein family XC_4259 PF00083 Sugar (and other) transporter XC_4261 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_4261 PF03466 LysR substrate binding domain XC_4262 PF00106 short chain dehydrogenase XC_4263 PF13091 PLD-like domain XC_4263 PF13396 Phospholipase_D-nuclease N-terminal XC_4271 PF01609 Transposase DDE domain XC_4271 PF05598 Transposase domain (DUF772) XC_4278 PF00849 RNA pseudouridylate synthase XC_4281 PF13614 AAA domain XC_4286 PF01381 Helix-turn-helix XC_4287 PF13538 UvrD-like helicase C-terminal domain XC_4288 PF12705 PD-(D/E)XK nuclease superfamily XC_4288 PF00580 UvrD/REP helicase N-terminal domain XC_4288 PF13361 UvrD-like helicase C-terminal domain XC_4289 PF17946 RecC C-terminal domain XC_4296 PF00005 ABC transporter XC_4297 PF02405 Permease MlaE XC_4298 PF02470 MlaD protein XC_4299 PF05494 MlaC protein XC_4301 PF04333 MlaA lipoprotein XC_4302 PF00255 Glutathione peroxidase XC_4304 PF02646 RmuC family XC_4305 PF00107 Zinc-binding dehydrogenase XC_4305 PF08240 Alcohol dehydrogenase GroES-like domain XC_4306 PF03466 LysR substrate binding domain XC_4306 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XC_4309 PF13520 Amino acid permease XC_4311 PF00593 TonB dependent receptor XC_4311 PF07715 TonB-dependent Receptor Plug Domain XC_4312 PF10947 Protein of unknown function (DUF2628) XC_4313 PF00990 Diguanylate cyclase, GGDEF domain XC_4314 PF17853 GGDEF-like domain XC_4314 PF13556 PucR C-terminal helix-turn-helix domain XC_4314 PF05651 Putative sugar diacid recognition XC_4315 PF02595 Glycerate kinase family XC_4316 PF07690 Major Facilitator Superfamily XC_4320 PF10672 S-adenosylmethionine-dependent methyltransferase XC_4320 PF17785 PUA-like domain XC_4321 PF03741 Integral membrane protein TerC family XC_4322 PF01694 Rhomboid family XC_4324 PF03009 Glycerophosphoryl diester phosphodiesterase family XC_4326 PF01569 PAP2 superfamily XC_4327 PF00593 TonB dependent receptor XC_4328 PF01926 50S ribosome-binding GTPase XC_4328 PF10396 GTP-binding protein TrmE N-terminus XC_4328 PF12631 MnmE helical domain XC_4329 PF01522 Polysaccharide deacetylase XC_4330 PF02096 60Kd inner membrane protein XC_4330 PF14849 YidC periplasmic domain XC_4331 PF00825 Ribonuclease P XC_4332 PF00468 Ribosomal protein L34