 JH290_00015    2184 ..    2202 +  -2.3  -3.14931   CGACAGAGCCGGACC             CCCGTTC CGACT GAGCGAG             TTGCTGCCCGATGAA  43 12
        yidC    3951 ..    3968 + -14.1  -3.95073   AGTAAGTGGAACAAG             GCCCGCC GCAA GGCGGGC              TTTGTACATGTGCCC  86 36
 JH290_00025    6721 ..    6735 +  -2.8  -4.29327   CAGGCACGCGCAAAG               TTGCAG ACC CTGTGA               TTTCTCTTGGTTCTC  64 11
        mnmE    8140 ..    8161 + -15.9  -2.67441   GCCACCCATGAAAAA           TCCGGCCTC TTGC GAGGCCGGA            TGCTGTGGTCACTTC  77 67
 JH290_00045   15417 ..   15429 +  -5.5  -4.21462   TAACGGCGGACGTGC                TGCTG TGA CGGCA                TTTTCGATGCTGCGT  67 74
 JH290_00050   16793 ..   16818 +  -2.4  -3.91716   CTCCTACGTGAGGCG         GGCGGCGACC TGGATT GGTCGGTGGC          TTGTTTGAAGAATGG  54 113
 JH290_00065   20941 ..   20958 +  -5.5  -2.75712   GGCGGTGTTCTGCCG             CGTGGTC GACT GACAACG              TCCTTAGCTCCCTGC  46 13
 JH290_00070   21486 ..   21515 +  -4.9  -3.14132   GACGATTGAGCGGTT       CGGCGCGCGCTGCA GTG TG-AGCGCAGGCTG       TTGATCAGCACGCGA  48 32
 JH290_00075   22034 ..   22070 +  -6.5  -3.04144   GTGACCGCACCGAAG   GCGCCCGGGCCCATGA ACACGG TC-TGGGCCTGCGCGG    TGTTGCCGATCACCG  51 333
 JH290_00090 NONE
 JH290_00095   27672 ..   27687 +    -6  -3.60627   TGGTGCGCCGCGCAC              GCCGGC CGGC GCCGGG               TTTCCCCTAGCATAG  57 41
 JH290_00100   29038 ..   29064 +  -2.1  -3.37796   GACACATCTGCGTGG         CAGCGCACGGA TTTGC TGCGCGGGCTG         TTATGCCTGCTCCGC  45 178
 JH290_00105 NONE
 JH290_00110   31411 ..   31428 + -12.7  -5.29782   GCGCAGCGTTGCCAA             GCCCGGT CTCG ACCGGGC              TTTTTTATGCCTGTG 100 76
 JH290_00115   34847 ..   34860 +  -3.8  -2.72227   CGACGTCCGCGTCGC               CCTC TCCCCC GAGG                TGATTCCCGCATGTT  42 99
 JH290_00120   37634 ..   37647 +  -8.1  -3.25015   ATTCACTCTTGAAGG               CGCGT GGCG ACGCG                TTCGTCATCGTTGGC  58 314
 JH290_00145   42987 ..   43006 +  -5.6  -2.91264   GTGATGAGGCCTGGA            TTGCGAGC GATG GCACGCGA             TGTGTGGATGGCGGC  48 384
        rmuC   45063 ..   45076 +  -2.3  -3.80573   GGCCAACGCCATCTC               ACAGC CGTC GCTGG                TTTAGTCGTGATCCA  52 253
 JH290_00160   46260 ..   46290 + -16.9  -2.67747   CCGCTGACCTTAGCG      CGCCGGGTGCAGCG CTCG CGCT-CGCCCGGCG       GTTATGCTCTGGCGC  83 42
 JH290_00165   46864 ..   46879 +  -3.2  -2.70932   GTCGATGCGGCGTTG              GCGC ACTAACCG GCGC               TGCTTGGACAAAGAC  40 17
 JH290_00170   47562 ..   47581 +   -15  -5.63645   GCCACAACAAAAAAA            GCCCGGGA TCGC TCCCGGGC             TTTTTTATATTTTCC 100 127
        recC NONE
        recB NONE
        recD NONE
 JH290_00220   62296 ..   62322 + -16.6  -3.55444   GTGTCACCCTAAACG         CGAGGTCAGGCG ATC CACCTGACCTCG         TTTGCCAGGTAGCAG  91 163
 JH290_00235 NONE
 JH290_00240   65432 ..   65455 +    -3  -3.32844   AGGGGATGCGCGGGA          GGCCAAGGTGG ACC CGACCA-GGCC          TTCTCACGTGAGCGC  46 199
 JH290_00260   70617 ..   70631 +  -5.6   -2.7566   CGCTTGTTGGATGTT               GAGCGG CGA CCCCTC               TCATTAGGATTGCAT  45 232
 JH290_00275   74791 ..   74826 +  -6.3   -3.6502   AGGCCGCACTAAAGC    TATATCCCCTTTTCA AATATC TGAAAAAGGGATAAA     TTTGGGTGGCGGATA  59 326
 JH290_00285   75432 ..   75450 +  -5.8  -3.54146   GAACACGTATTGGCC             CGCCTGCG CAT CGCTGCCG             TCTTTGCTTAGAGAC  54 289
 JH290_00305   78807 ..   78817 +  -8.2  -3.34962   GGTGCTGGGTTGATG                 CGCG TGG CGCG                 TTGTCACCTCTGCAC  60 128
 JH290_00330   83569 ..   83595 +  -2.8  -2.74012   CAGCTGCGGCTGCAG         GCCTCGGCTTAC TGA GGGAGCTGGTGC         TGGTTGGCGTGCTGC  40 11
 JH290_00350   88156 ..   88173 +  -5.5  -4.07568   GGAACACGCGCAGCG             CCGCCTGC AAC GT-GGCGG             TTTTCCAGCCGCAGA  65 74
 JH290_00355   89747 ..   89780 + -14.5  -3.36515   GGCTCAGCGCACTGC     CAGGTGGCGGCGAGG ACTA CCTTGCCGCCACACG      TCTTTGAAGATGAGG  82 109
        folE NONE
 JH290_00390 NONE
 JH290_00395   98589 ..   98610 +  -7.9  -3.78394   GAGCGAAGCAAGGCT           TTCACGCCC TTGC GGGCGCGAG            TTACTTTCTTTGCTT  65 273
 JH290_00400   99014 ..   99026 +  -4.8  -2.78384   AAGACCTCGATGCAG                TCGC AAAGA GCGA                TGTAGTAACGAAAAA  44 73
 JH290_00405  103386 ..  103431 + -24.7  -2.87931   CGCAGCAAACGCTGA GCGCGGCCCCCGCGACCGCGCC ACC GGGGCGGTCGCGGGGGT-GCGG TGTCTACGCGATGCG 100 26
 JH290_00420  105992 ..  106023 +  -4.2  -2.71364   GATCACGGTGCAAGG      CCGGCGCGCCACACG GTC CGCAGGGT-CGCCGG      TCATTCCGGCAGTCG  42 85
 JH290_00425  106468 ..  106491 +  -3.9  -3.14468   CTGATTCCTGCGCCC         CCTGCACGCGC CCCG GC-CGT-CAGG          TTGGCTATGCTCCCC  47 109
 JH290_00430  108908 ..  108930 + -19.2   -2.8552   ATACCCTCACCCCAA           CCCCTCTCCC GGC GGGAGAGGGG           CTTTACTCCATCACG  91 203
 JH290_00435  110781 ..  110800 +  -6.4  -4.28375   TAGCTCGCATGCCCT            GCTAGGCT GAGC AGCTTGGC             TTTTGACTGTCTTCC  73 81
 JH290_00440 NONE
 JH290_00445 NONE
 JH290_00450  113421 ..  113431 +  -2.4  -3.66028   CCCACCTGACGGCTG                 CTCG CTA CGTG                 TTGTTAGCCGTTCTA  49 1
 JH290_00460  117220 ..  117234 +  -3.4  -3.06796   AGGTCGGTATGCGAA               GTCCCT TTT GGGGCC               TTAGCTCAGCTGGGA  43 111
 JH290_00465 NONE
 JH290_00470  117604 ..  117621 +  -5.5  -3.54475   CAACACGGCATGTAA             CTCCGAG GCAA CTTGGGG              TTATATGGTCAAGCG  57 229
 JH290_00475 NONE
         rrf  120762 ..  120793 + -18.2  -4.98522   CCAGGGGCTTTACCC      GAAACCCTCAGTCC AACA GGATTGAGGGTTTC       TTTTTGTCTGCAATT 100 35
        mutM  122413 ..  122426 +  -4.5  -4.28994   GCCGCGCCCACCTGA               CGGCT GCGC AGTCG                TTTTGATAGCTGCTC  66 342
 JH290_00500 NONE
 JH290_00505  125525 ..  125563 +  -3.6  -3.29144   ATCTACTGACCTGCG   TTGCCCGGACCTGGCC GTGCTTA GCCCGGGGCCGAGCGG   TTGTCGACCAGCTGC  46 32
 JH290_00520  130176 ..  130186 +  -4.6  -4.28774   ATTTGTTGATGCTTA                 TCGC CAG GCGG                 TTTTGCCTTGCATGC  68 335
 JH290_00525  130831 ..  130852 +  -9.3  -3.06696   GTGGACAGCTGAGCT           GGCCTGCGG CACG CTGCCGGCC            TGTCTTGCCGCCCAA  60 29
 JH290_00530  132243 ..  132259 + -10.1  -2.62184   CTCCAGGCTGAGTAC              GCGGGCT TCC AGCTCGC              TGCTGTCGGCGCCGC  57 356
 JH290_00540 NONE
        pyrF  135041 ..  135063 + -14.9  -5.75945   TCCCGGTTTTTGAAG           GGATCGGGC CTTGT GCCCGATCC           TTTTTTTTGACCGGT 100 187
 JH290_00570 NONE
        plsB  148868 ..  148878 +  -8.2  -3.23274   TAGGTAGGCGCAGAC                 GCGC AAG GCGC                 TTCCCTTCTCCCCCG  58 105
 JH290_00580 NONE
 JH290_00585  150534 ..  150546 +  -5.5  -4.58283   GATGCAGTCCTTGAG                GTGCA ACT TGCGC                TTTTTCAGGCGCTTC  77 167
 JH290_00595  151529 ..  151542 +  -2.5  -3.13728   AATAAAATGGTTAGA               TTTTA TGAA TAAAA                TTGCATCTCGATCAT  43 147
 JH290_00600  152560 ..  152572 +  -6.2  -3.91332   GGCGCTGATCCGCAG                GCGC AGAGA GCGC                TTCTTGTGTAGTCAT  64 240
 JH290_00620  156188 ..  156234 +  -8.1  -3.05343   CTTGACGCAGCCCGC GTGCGA-GAGC-CGGCGATGCAG TCA CTGCATCGCTAAGCTGGTTGCAC TCTTACCGCTGTGAC  57 36
 JH290_00645 NONE
 JH290_00650 NONE
        uxaC NONE
 JH290_00660  170106 ..  170116 +  -8.2  -3.55563   GTTGCTTGGCGTGCT                 CGGC ACG GCCG                 TTTCGCCCATCGCCT  65 183
 JH290_00670  171754 ..  171773 +  -2.9  -3.29511   GGGCCAGTCTTTTAC            TCTCTGAC GCCTG GTCAG-GA            TTCTCGGCAGCTGCG  46 246
 JH290_00685  174100 ..  174139 + -10.7  -2.78384   CGCCCTTCACCGCGG  CTGCCTGCG-TGCCGTGG CGCCC CTGCGGCAACGTCGGCAG  TGTCGTCCAGCGCGC  60 271
 JH290_00695  176258 ..  176274 +  -2.1  -4.28994   CCGTGCACCGGCCGC              GGGCGGC TGC GTCGTCG              TTTTGATGGCTGCTC  62 123
 JH290_00710  177376 ..  177399 +  -2.4  -3.07344   ACACCGCTTGGGCTG          TTACGCCG CCAATGAT CGCCGTAA           TGTGTTCAGCACTGA  41 148
 JH290_00715  178038 ..  178048 +  -6.8  -3.84406   ACCGGAGTCTGCAGA                 TCGG CTT CCGA                 TTGTTGTCGTCCAGG  64 239
 JH290_00755  191915 ..  191925 +  -5.4  -3.19653   CGAAACATCAACGCG                 TCAG ATA CTGA                 TTGATCAGGTTCTCG  48 99
        ttcA NONE
 JH290_00770 NONE
 JH290_00775  196830 ..  196849 +  -4.2  -3.06183   AAGAATGTCCACGGC            GTGTGCCA CGCC TGGAACGC             TTCGATCGCGGTGAC  45 488
 JH290_00790  199893 ..  199913 +  -8.1  -2.82193   TGACCGGCTGTCATC            CCCCTGCGC GGT GCGGTGGGG            TATCCTGAGTCTCCT  54 38
        tatA  200171 ..  200196 +  -5.3   -3.1577   CGAGCGCGACCGCGA         CGCGCGCTGAT CCGG AACAGCGTCCG          TGTTCGATATTGGGT  48 16
        tatB NONE
        tatC  201797 ..  201807 +  -6.8  -3.40403   CTAGCCTCCGCGCTC                 GCCA GAA TGGC                 TTCTGGTAGGAGCGC  57 305
        glyQ  207217 ..  207233 +  -3.5  -2.57132   CGCCCGTACCCTCAT              CCGCCCC TTC GGGGCAC              CTTCTCCCGACGGAA  39 261
 JH290_00830  209830 ..  209842 +  -6.2   -4.9934   ATGCGATTCATTCTC                CGGG TTCGT CCCG                TTTTTCTGCTCTTGT  85 383
 JH290_00835 NONE
 JH290_00840  215491 ..  215523 + -19.3  -2.78816   GTTCTGCCGACCACA      TATGCGGCGCGATGG ATC TCATCGCGCTGCATA      TGTGATGACGGGTAG  87 63
 JH290_00845  216459 ..  216475 +  -3.6  -2.70528   TTTGCCCGCCGGGCT              GGGCCA GCGTG TGGCCA              TCGTGTGTGGCTACT  40 365
 JH290_00855  216894 ..  216923 + -22.3   -4.3586   GCTTGGCGCCACACA       CAACGACGCCACC CGAA GGTGGCGTCGTTG        TTTTGCTGTCACTGC 100 132
 JH290_00870 NONE
 JH290_00875  224065 ..  224092 +  -7.6  -2.55351   AGCGCGCTCCTACGG        GAGCGGGCCAGC GGAC GTTGGCCAGATC         GTTCCTGTGCGCAAG  51 126
 JH290_00880  228514 ..  228527 +  -2.3  -4.16279   GGCCGGTACCGGTGT               CTGCC CGCA GGCAA                TTTTCCACTGATCTC  59 412
        fucP NONE
 JH290_00910  235585 ..  235640 +  -9.4   -2.6933   TAACCAAAAGAAAGC ACACCCCGTCCT-CGCGCCCGGCGCGC TGC GCGCGACGGGTGCGCAAGGCCGGCAGA AATTTTTGTAAGGGA  57 281
 JH290_00920  238339 ..  238363 + -15.7  -3.19192   CGTACCCTCACCCCA          ACCCCTCTCCC GCG GGGAGAGGGGC          TTAAATTGCATCCCG  83 219
 JH290_00945  244276 ..  244291 +  -5.4  -3.09834   ACTCGGCCGCGCATT              GCCATGC GCT GCA-GGC              TTCGGTCGTCGGCTG  49 363
 JH290_00975 NONE
 JH290_00980 NONE
 JH290_00985  253304 ..  253335 + -18.1  -3.53811   CACTGAGTGCTGTCA      CGC-AGACGCCGGC CTTGT GCCGGCGTCTTGCG      TTTGGGGGAGATGAG 100 51
 JH290_00990  255024 ..  255057 +   -21  -2.78463   CCCATGCGGGCCAGT     GGCCCCGACGCCGG CATTGC CCGTCGTCGGGGCC      TGTCATCACGGAGAT  91 57
 JH290_00995 NONE
 JH290_01000  256875 ..  256894 +  -5.6  -3.35679   GTGGGATCGGGCGCG            CCTGCC-CG CGG CGTGGCTGG            TTGTCGATGCGGACC  53 111
 JH290_01010 NONE
 JH290_01015  261996 ..  262037 +  -6.5  -2.78816   GACAGGGGCCGCCTT TATGGACGCG-GCGTGGATG ACG CGTCCACGCACGCCTTCCCA TATCGTCCGCCGTCC  49 74
 JH290_01020 NONE
 JH290_01025 NONE
 JH290_01030 NONE
 JH290_01035  266342 ..  266352 +  -6.8  -2.87132   ATCTCGCGCTGCCGA                 GCTG CAG CAGC                 TCTATCACGCGCACG  50 142
 JH290_01040  268543 ..  268563 +  -2.4  -2.87132   GCGGTGGTGGAGGCG            GCGGTGGC GGGTA GGCACCGG            TATGTGCGGCAAGGC  40 12
 JH290_01045  269209 ..  269238 +  -4.9   -2.5934   CGTGGGCGGGTGGAC       GG-ATCGGGCCATC GGC GAGGGCGCGGTACC       ATTGGTGGTTTGAAC  43 57
         xth NONE
 JH290_01055  270499 ..  270524 + -14.7  -3.02144   GGCCAGCTGAAACAA         CAACGCCCGGG CTTG CCCGGGCATTG          TGTTCACAGCCCTGC  78 47
 JH290_01065  271687 ..  271701 +  -9.2  -4.07568   AACGGTGAGGTGTTC               GGTGCC GGC GGCGCC               TTTTGGAACACCACC  75 170
        rsmG  274194 ..  274210 +  -6.5  -3.51232   GCAGTCGGCCCGGTG              CCTGCGA TGA TCGGAGG              TTCGTTTCGACCGCA  57 126
 JH290_01080  276193 ..  276206 +  -8.1  -3.87815   TCAGGCCCACCCCGA               CACCG GCAT CGGTG                TTTCTACGCCTAAAG  71 163
 JH290_01085 NONE
 JH290_01090  278135 ..  278151 +  -3.6  -3.21912   GCGCACCACTTCCAC              GCGCTG TTCTT CATCGC              TTGCTGCCTTCGGCG  44 174
 JH290_01095  279798 ..  279808 +  -8.2  -3.54129   CATCCGTGCGCGCCG                 CCCC GGT GGGG                 TTTGCCCACCGTCTC  62 359
 JH290_01105  283372 ..  283392 +  -9.6  -3.04144   GGCGCAGCAGCACGG            GGGCACGC CATGA GCGCGCCC            TGTTGCGGATGCGGA  60 13
 JH290_01110 NONE
        rpmB NONE
        rpmG  284797 ..  284814 + -14.1  -4.84529   TGCTTCCAACAAAAA             CCCCGCC GAGA GGCGGGG              TTTTTGCGTTTGTGG 100 59
 JH290_01140 NONE
         cls  292013 ..  292027 +  -3.4  -2.71011   GGCGTTGAAGCATCG               GGCAGC ATG GTGGCC               TGATTCGCACAGCGT  40 75
 JH290_01150  293777 ..  293802 +  -8.9  -3.75766   CCGTACCCTCACCCC         AACCCCTCTCC CGTA GGAGAGGGGCG          TTGTTCCCTTCTCCC  69 141
        uvrD  296418 ..  296431 +  -3.8  -3.83205   CCCGGGTAAATCAAC               CGCA ATACTC TGCG                TTTGGTATCGAAGGT  57 326
 JH290_01165  297546 ..  297573 +  -3.3  -3.58269   TGGCGCGCACTGATC        CGCAGGC-GACG CCGAC CGACTGACTGCG        TTTACCGCTGCATTG  51 3
 JH290_01170  298240 ..  298267 +  -6.2  -3.65224   CTCATCGCGCACAAG        CGCGCTCCTACGC AGG GCGT-GCAGCTCG        TTATTCGCCTGAGGT  57 150
        polA  302800 ..  302830 + -15.4  -5.45802   AGTTTCCGTTCCCTG       GCCCCGCCGACC TCCCCCT GGTCTGCGGGGC       TTTTTATTTTCAGGC 100 264
 JH290_01205 NONE
 JH290_01210 NONE
 JH290_01215  309920 ..  309944 +   -15  -3.35934   ATCAGACGGGACTCG          GCGGCCTGCG CGCGT CGTAGGCCGC          TTGTGGCGTGTATGA  82 219
 JH290_01220 NONE
 JH290_01225  311608 ..  311624 +  -4.3  -2.71483   TTGCGGAAGCCGCTA              GCGCTGA CTG TCGCCGC              TGCTTGACGCCATGT  42 2
 JH290_01230 NONE
 JH290_01235 NONE
 JH290_01240 NONE
 JH290_01245 NONE
 JH290_01250 NONE
 JH290_01255 NONE
 JH290_01260  317172 ..  317203 +  -3.7  -3.44146   TGCGGTTCCTGTCTT     CGTTCGCGCGTCTGA GCGA TGAG-CGCGCG-GCG      TTCCTTGTGAACCGC  51 4
 JH290_01280  323483 ..  323495 +  -7.7  -2.61695   CTGGTGTTGGGGTTG                CTCAG TAG CTGAG                GTGTTTGCGCGTGCC  51 14
 JH290_01295  326327 ..  326360 + -10.1  -3.04144   AGACCACCTGAGGTT     CCGGCCACGCCGCCT GCGC AGGCGGCGCCGTGGG      TGTTGGGGCTGGGCG  62 30
 JH290_01300 NONE
 JH290_01305  327849 ..  327862 +  -2.4  -3.78775   ACCCAGGATCTGAGT               TCCA CGCTTA TGGA                TTTCGTCGTACCGCA  52 28
 JH290_01310 NONE
 JH290_01315 NONE
 JH290_01320  329767 ..  329779 +  -2.6  -2.84878   TGCCATGACATTGGA                GCCG GCACA TGGC                GTTTGAATTGAACGC  40 105
 JH290_01325 NONE
 JH290_01330 NONE
 JH290_01335  332935 ..  332945 +  -2.4  -3.64822   TGCTGCCAATTGCGG                 CCCC GAC GAGG                 TTTCCATGAGCACAT  49 181
        fabG  333676 ..  333687 +  -3.6  -2.54186   GATTGGCATCAACGG                CGGC ATGG GCTG                 AATTTTCTCAGGTAT  39 13
 JH290_01345 NONE
 JH290_01350  336059 ..  336073 +  -9.2  -3.27475   GGCCGTCACCGGTGA               CCGTGC CCA GCGCGG               TGTTGTGCTGACCCC  61 295
 JH290_01375 NONE
 JH290_01380  343971 ..  344023 + -14.8  -2.79321   GGGTGTCGTCGATGG CGCGCTTCCTGCGCGAAGGC-CGCTG AGC CAGCGCGCCTTCGCGCCGCT-GCGGG TGCTGTTCGTGTGCA  75 0
 JH290_01385 NONE
 JH290_01390 NONE
 JH290_01395  348135 ..  348147 +  -3.3  -4.16251   GATGTCGCTCTGGAA                CGGGA GCA TCCGG                TTTTCGGGCTTCTGT  61 185
        mgtE  353210 ..  353222 +  -3.3   -3.3334   TGCCGCGGCGATTCT                GAGCG GCA CGCTG                TTGTAGAGTCCGGTT  46 7
 JH290_01415 NONE
 JH290_01420  356963 ..  356978 +  -6.1  -2.91383   TGCATGCCGGACCGG              CCAGG CCTTGC CCTGG               TGTCTCCGTCCGGCT  48 75
 JH290_01425  358103 ..  358155 +  -4.6  -3.55368   CTTAAGAGCGGCTAC GGAGCGCCTTCGTGGCTGTCGGATG GGTG CTGCTGACGGAC-CGGCGCCGCTCC TTCTGTGGCTTGGCT  55 64
 JH290_01430  361922 ..  361942 + -18.3  -4.36914   CTGCGCCTTCGGCGC            GCCCCCCTG ACT CAGGGGGGC            TTTTCTCCAGCACGA 100 112
 JH290_01435 NONE
 JH290_01440 NONE
 JH290_01445  364430 ..  364451 +  -3.7  -4.02736   AGAAGACCCAGTAAC           CAA-GGGTGG TTG CAACCCATTG           TTTCTAATATAAATT  61 187
 JH290_01450 NONE
 JH290_01455  365660 ..  365692 +  -4.5  -4.18702   CGCGTGCATGCCACA      CAGCCGCCGCGGCCG CAT CGCCAGCGCAGGCCG      TTTGTTCCACCTTCT  63 410
 JH290_01460  366131 ..  366169 +  -2.5  -2.87211   CAGCCTAGCGCCGAA C--CA-CGCGCCGTTGGC GATGCA GCCAACGGCCCGCTGCAG  TGTCTCCACAAGGAT  40 33
 JH290_01465  366922 ..  366932 +  -6.8  -3.38812   TGCGGTGATGCCTTG                 CGAC GCT GTCG                 TGTTGTTGCACCGAA  55 53
 JH290_01495  372543 ..  372576 +  -3.7  -3.34895   GCACATCGCGCGTGG     CCTGCTGCAGTTGGG TCAG CTGGTCTGCAGCAAG      TTGCTTGGGCATGCC  47 222
 JH290_01510  375553 ..  375567 +  -2.1  -3.02511   ACTCATCAATCGCAT              CGC-TG CCGG CACGCG               TGTTGCGGCGCTGGG  41 105
 JH290_01515 NONE
 JH290_01520 NONE
 JH290_01525 NONE
 JH290_01530 NONE
 JH290_01535  380511 ..  380534 + -12.4  -3.93057   CGTACCCTCACCCCA          ACCCCTCTCC CGCA GGAGAGGGGC           TTTAATCCTTTTCCC  81 202
 JH290_01540  381231 ..  381243 +  -6.2  -3.65812   GCGCTTCTGCTCGGC                GGCC TGCTT GGCC                TTGTCTTCAACCAGC  59 504
 JH290_01570 NONE
 JH290_01575 NONE
 JH290_01580  392881 ..  392899 +  -2.4  -2.91728   TGCCGGCGCCGCGTC            TGCCGCG TACGGT CGC-GCA             TCTCCTGTTGGAAAT  40 187
 JH290_01585  394817 ..  394831 +  -4.2  -3.24032   AGCGAGGCGCTGCGG               CGCC CTGGTCT GGCG               TATTACTTAGAGGCT  47 124
 JH290_01595  395968 ..  396008 + -10.4  -3.13432   ACTTGTGCGCTGTCC ATCGCCTGCCAC-CGCTGG CCTG CCACCGTGTTGCAGGCGAC  TTCGATGCTCTTCGC  64 99
        hemB  397250 ..  397265 + -11.8  -5.74122   CTAAGTGCACGAACA              GGCGCC TGCG GGCGCC               TTTTTTTATGTGGTG 100 49
 JH290_01605  400274 ..  400309 +  -7.4  -3.76224   TGGCCGGCGCGCGGT    GCGCGG-GCGCTGCCGG TCA CCAGCAGTTCGCCGGGC    TTTGCTGCGTCCACC  66 402
        aroE NONE
 JH290_01620 NONE
 JH290_01625  402630 ..  402644 +  -9.2  -2.78816   GTGATCGCGCCCGAA               CTGGCG GCA CGCCGG               TCTGGTGGCGCATGG  57 81
        dinG  405114 ..  405131 +  -8.4  -3.05384   GTGTCGTGAGGTGAT             GCAGGC GAGACA GCCTGC              TTCCATGCAAGAAGC  57 228
        katB  407082 ..  407116 +   -20  -3.51232   CAGGACTGATCCACC     CGACGGCATCGCGGCG CCA TGCCGCGGTGCCGTCC     TTCGTTTCGGGAGAG 100 32
 JH290_01645  407747 ..  407764 +    -4  -3.32647   GCAGCAGCGCAGCAG             CGTGCG AGAGGG CGCTCG              TTCGTGTGCTTGCCG  48 61
 JH290_01650  408063 ..  408092 +  -5.8   -4.0371   AGGGAATTTCTGACG       CG-CAAACCCTTG CACGC CAAGGGTTTGACA       TTTATCTGAGCGCTC  65 28
 JH290_01655  408586 ..  408599 +  -3.7  -3.40498   CGATAGCGCTCGTAC               GCGGC AAGC GACGC                TGTTGTTCGCCCTTC  49 180
        dusA  410117 ..  410142 +  -4.7  -3.60818   GCTCGATTTCTGCGG         CTGGCATTGGTG TGA CAC-GGTGCCGG         TTTCACGAATTTTGA  55 268
 JH290_01670  410568 ..  410583 +    -9  -3.06915   CCGATCACCAGTAAG              CGCAGA TACT TCTGCG               TTCAGTGACATAAAT  60 27
 JH290_01675  411375 ..  411405 +  -8.1  -3.61398   CAAGTGGTATCGGCG       CTGGCGGCCGCGC TCGTT GCAGGCCCGCCAG       TTGTTGGCCGCCAGC  65 78
 JH290_01680  412743 ..  412754 +  -5.8  -2.61264   ACGTTTCGAAGTCAC                CCTG CCGC CAGG                 CTTGTAACTGACAGC  46 7
 JH290_01685 NONE
 JH290_01690  415754 ..  415770 +  -4.3  -3.28181   GGCGGTAATTGCAAG              CGATGCC GTG GCCGTCG              TGTTACTTCAGTTTG  48 115
        birA NONE
 JH290_01710 NONE
 JH290_01715  419440 ..  419462 +  -3.2  -3.54543   TGCGCTAGAATGCGC           ACCCTGCGCG ATG CGCGCACGCC           TTTGCCGGCATAGCT  51 33
 JH290_01720  419787 ..  419799 +  -6.9  -3.53012   GCGACGCGTCAGGAA                GCCGC TCA GTGGC                TTTGGAGCGCGAGGC  57 271
 JH290_01725  420045 ..  420055 +  -4.6  -4.05033   CATACCATGAAGGCT                 GGTC GGA GGCC                 TTTGTCTGCGATGGC  63 111
 JH290_01730 NONE
 JH290_01735  420991 ..  421028 + -22.3  -4.31835   GCGTTTTTTCCTATA   TGAAGAAGCCCGCC-AGA TAT TCTTGGCGGGCTTCTTCA   TTTCTTGTGGCCCTT 100 67
        rocF NONE
 JH290_01770 NONE
 JH290_01775  426657 ..  426672 + -11.8  -5.96219   ATCGGTGAACAAAAA              CGGGCC GAAA GGCCCG               TTTTTTTTGTGGATG 100 53
 JH290_01780  427118 ..  427140 + -20.6   -3.9941   GCAGCGTGTGCAAGG           GACGGGCCGC ACT GCGGCCCGTC           TTTCGTTGTACGCGG 100 72
 JH290_01785 NONE
 JH290_01790  429537 ..  429562 +  -3.9  -2.91274   CTGGATCGGCCGGTG         CGC-GCGGGCTG AGG CAGCGTGTGGCG         TGTGGTTGCGCTGCA  44 14
 JH290_01795  431532 ..  431544 +  -4.7  -3.02461   CGCCTGCAGGATCAA                GCCGG GAG CGGGC                TCTTCCAGACGCTTC  45 192
        yedA NONE
        rarD  434021 ..  434047 + -10.1  -3.27525   GGCCGGCAGCGCCTG        CGGGGCCG-GGC AAGT GCCGCGGTCCTG         TTGCGTTTGCGCCAG  63 243
 JH290_01835  439117 ..  439148 + -12.3   -3.2048   TCCACCAGCGCGGCG      GCGGGCACG-CGCA CGCCT TGCGGCGTGGCCGC      TTCCTGCGGTTTGGC  69 270
 JH290_01845  441731 ..  441773 + -11.2  -2.78384   CGCGCTGACGGCGCA GCGGTCGGTGCGCGTGTCG CATACA CGCCAGGCGC-CCGGCTGC TATCGTGCGCAGCCG  63 33
 JH290_01850  442434 ..  442452 +  -2.3  -3.04322   GTGATGCACTGATAC             GCGTGCA CGGCA TGCGCGA             TGTTCCGCGGTTACA  41 45
 JH290_01855  443816 ..  443828 +  -3.3  -3.28712   CAGCCAGTGCGAGGC                GATGG CTG CCACC                TTCTGCCAGGCCGGC  46 457
 JH290_01915  454101 ..  454129 + -20.3  -4.00868   ACGCGCTGAAAACCA        CGGGCCGGCGCTG CAG TAGCGCCGGCCTG        TTTCATTGTCAGTGG 100 32
 JH290_01940 NONE
 JH290_01945  459541 ..  459565 +  -6.3  -3.53012   TGCGGCAGCACGCGC          TGGCTGACCAG CAG CAGATCGGCCA          TTTCGCCAAAGCCCA  56 164
 JH290_01970 NONE
 JH290_01975 NONE
 JH290_01980  464533 ..  464558 +  -8.3  -3.14344   GGCCGGCGCTCGGAA         TCGGCATGTAC CCAC GTACATTCCGG          TTCCTCCGCGCCGTC  58 82
 JH290_01985  464695 ..  464717 + -19.2  -3.63515   AAGACTTGAAAACAA           CAACGGGCCC ACT GGGCCCGTTG           TTGTTAGCCATCCGC 100 108
 JH290_02015 NONE
 JH290_02020 NONE
 JH290_02025  473769 ..  473781 +  -4.8  -2.70932   GTAGTTTTGCAGCGC                GCAG CCTGT CTGC                TGATTGGCGACCCAA  44 381
 JH290_02035  476156 ..  476166 +  -2.4  -2.82015   ATCCGGGCTGCCGAC                 CAGC GCA GCGG                 TGTAGTCGCTATCGA  40 204
 JH290_02055  479581 ..  479622 +  -9.3  -2.53747   TCGGCGGTGAGCGCG GCTTCGGCGTC-GCTGGGCG CGA TGCCGACCAGGCGCCGACGC ATCTTCTGGAAGTTC  54 396
 JH290_02065  481499 ..  481524 + -20.5  -3.60151   CTGCAGATGTGGCAA         CGGGGCGGATG ACAA CATCCGCCCCG          TTCTCGTTTCACACG 100 58
        speA  484569 ..  484606 + -13.3  -2.69468   ACCGTTGGGCTGATG   GGCAGCTGCGCTGCGGC CAGT GCCGCAGCGCAGTGGGG    TGGTGTGTGCGCATG  68 28
 JH290_02085 NONE
 JH290_02090  491054 ..  491080 +  -9.5  -2.81133   GGCCGCGTGATGCGG        CGGCGGAGTACG TTTC TGTA-TCCGCCG         TCTGCTCCATGCATG  57 318
 JH290_02095  492724 ..  492740 + -15.1  -2.64912   ACGCGAATGAAGAAA              GCCGCGC AAT GCGCGGC              CTTCTGGCTTCAGCA  77 186
       coaBC NONE
         dut NONE
 JH290_02135  501928 ..  501961 +  -6.7  -3.53343   AGGAATAGCCACCCC     GCCGCG-GCGACGA ACTGACG TGGTTGCGCGCGGC     TTTCCCGGCGCACTT  57 153
         xth  510315 ..  510340 +  -5.3  -3.17075   CGTCCCAGTTGCAGC         AGCGCGGTG AAGGCGGC CGCCGCGCG          TTCCATTCGAGGCGA  48 163
 JH290_02195 NONE
 JH290_02200  512030 ..  512040 +  -8.2  -3.67989   ACCCCCTGATAGCAG                 GCGG ACG CCGC                 TTTAACTACGCTTTT  69 32
 JH290_02215  516450 ..  516461 +  -7.2  -3.05022   AGGCAACTGATCTGT                GCCG CTCG CGGC                 TATCTATATAGAGCG  54 69
 JH290_02220  518818 ..  518832 +  -3.4  -3.06796   AGGTCGGTATGCGAA               GTCCCT TTT GGGGCC               TTAGCTCAGCTGGGA  43 111
 JH290_02225 NONE
 JH290_02230  519202 ..  519219 +  -5.5  -3.54475   CAACACGGCATGTAA             CTCCGAG GCAA CTTGGGG              TTATATGGTCAAGCG  57 229
 JH290_02235 NONE
         rrf  522360 ..  522391 + -18.2  -4.72333   CCAGGGGCTTTACCC      GAAACCCTCAGTCC AACA GGATTGAGGGTTTC       TTTTTGCCTGTAATT 100 35
 JH290_02250 NONE
        coxB  528575 ..  528585 +  -3.2  -2.76263   CTCGCAACCGCACCG                 CTTC GCA GAGG                 TCGTTCCGTCATGGC  40 44
        ctaD NONE
 JH290_02265  530347 ..  530389 +  -3.3  -3.69338   CCTCGGGAGTCATCG GCCGATGAGTACGCGTCTGC CCAC GCACACGCCCACT-GCCGGC TTGTTCAAGTTGCTT  54 18
 JH290_02270 NONE
 JH290_02275  531893 ..  531914 + -10.1  -3.57561   GGGGAATGGGGAATC           GCAAGAGCG GTCG CGCACTTGC            TTTGCACGATTCCCA  70 59
 JH290_02285 NONE
 JH290_02290 NONE
 JH290_02295 NONE
 JH290_02300  536062 ..  536090 +  -9.6  -3.14211   TAGTAATACGGGGTC       TTGCTGC-GTCCG ACTT CGGCCAGCAGCAA        TTGCTCGGCGCCGCT  59 448
        tsaD  544901 ..  544920 +  -2.8  -2.54344   CGTAAACGCCGTTCT            C-CGGTCCA TTC TGTACCGCG            CTGTTGCTGGTTTTG  39 36
        folB NONE
 JH290_02350  547774 ..  547797 + -10.3  -2.63555   GGTACCGCCGTGGGC          GTGGCCTGC CGCAGT GCAGGTCAC           TCGGTTGTGTGGATG  59 41
 JH290_02360  549894 ..  549926 + -15.6  -3.66018   CTGCTGCGCCTTGAA      CGCGAAACGCCACC TCAAC GGTGGCGTTCTGCG      TTCTTGGCGTGGTCA  86 52
 JH290_02395  556833 ..  556849 +  -9.4  -2.53015   CCAAGCACTTAATCC              GCCCAC ATCCG GTGGGC              TGGCTTCCGAAATCT  56 154
 JH290_02400  558274 ..  558303 +  -5.7  -2.78384   ATTACTAACGCCGCA       GGTGCAACCCCGGC AAT GCTGGA-TTGCATC       TCTGCTGAGCACGAG  46 455
 JH290_02405 NONE
 JH290_02410  560148 ..  560159 +  -2.2  -3.88787   GGCAGCATGCGATCC                GGCA AGCG TGTC                 TTTCTGACCATCTCC  54 220
 JH290_02415 NONE
 JH290_02420  561390 ..  561412 +  -2.6  -4.29738   CTGCCGCTAGACTGG           GGCGTCTC TCGCGCT GGAACGCC           TTTTAATGAATCTGC  62 234
 JH290_02425 NONE
 JH290_02430  562523 ..  562550 +   -17  -3.53366   ATAGGATTCAACACA        CGGGAGCGGCCT GCCA GGGTCGCTCCCG         TTCTGCTTACGTCTA  93 182
 JH290_02435  563123 ..  563135 +  -5.5  -2.52464   TTCCAACCGCGCGAC                GGTTG TTG CAGCC                TGCGTTGACGACGGC  45 106
 JH290_02440 NONE
 JH290_02445 NONE
 JH290_02450  565419 ..  565430 +  -7.2  -2.79302   CATGGCGCGCGAGTA                CGCC GAAC GGCG                 TCTGGTAGCGCTGCT  52 143
 JH290_02455  566935 ..  566987 + -13.4  -2.98015   TGTAGCCAGACGGCG GCGTTGGTGTCGCGTGCCGC-GCCGC ATT GGGGCTGCGGTACGCG-CACCGAACC TATCTAATCGTTCGG  75 36
 JH290_02475  570395 ..  570410 +    -9  -3.14132   CGCGATCATCGAGAT              CACCGA CAGC TCGGTG               TTGGTGAGGAACAGC  59 441
 JH290_02495  579482 ..  579518 + -25.1  -3.16039   CAGGGGACGTGCCCG    CTAGGCGACGGGCCGCG TGA CGCGGCCCGTCGCCGCG    TTGATCCAGGTGATT 100 107
        queF  580392 ..  580410 +  -5.9  -3.53811   TCGATCTTCCGCGAC             CTGCGCC AGTAA GGCGCAC             TTTGCAGGCACTCGC  57 14
 JH290_02505  580815 ..  580834 +  -6.3  -3.01791   CGTAACCACCACGCT            GCCCGCG CGTTGC CGCGGCC             TGTTGCACACCCCCT  51 36
 JH290_02510  581524 ..  581545 + -13.7  -5.65177   CAGCGTGGGACCTGA           GGCGCGATC GCAA GGTCGCGCC            TTTTTTTGTGGCTGT 100 113
 JH290_02515  584087 ..  584117 + -22.7  -3.90922   GGTCAGTGCTACCTC       CAAGGCCCGCCTC GCCAA GAGGCGGGCCTTG       TTGTTTCAGCGAAAT 100 67
 JH290_02525 NONE
        aceK NONE
 JH290_02535  588237 ..  588253 + -15.1  -4.72272   CGGCCCACAAAAAAA              GCCCCGC AAT GCGGGGC              TTTTTCGTAACACAC 100 202
        rhlB  592701 ..  592720 +    -2  -3.53811   GCGCTCCGGCATAAT            CGCTGGAT GACC GTTCTGCG             TTTCGACAACGTCAG  49 95
        ftsE NONE
 JH290_02560 NONE
 JH290_02565 NONE
         ung  595930 ..  595946 +  -2.2  -2.92475   CGGGCTGGGCCGTCG              CGTCTG GCAAG TAGGCG              ATTTGTCACGATCCG  40 42
        rpoH  597012 ..  597045 + -21.1  -3.31144   TGACATTGCCAGTGA     TGCAAAACGGCCCGG TCTT CCGGGCCGTTTCGCA      TTGTGAGCGTGGCGG  95 48
 JH290_02590 NONE
 JH290_02595 NONE
 JH290_02600  601420 ..  601438 +  -5.9  -4.33928   TTCATCGCGCGCGAG             CGCGCTC CTACC GGGCGTG             TTTCTGTTTGCGGTC  71 198
 JH290_02610 NONE
 JH290_02615  606214 ..  606236 +  -3.3  -3.05384   CACCCGCAGCGCCAA           GCACTGACG ACAGA CGTCACCGC           TTCGGTCAGCGACAC  43 252
 JH290_02620  607807 ..  607817 +  -3.2  -4.18018   CGATCCATCGCGTCT                 TTCC GAC GGAG                 TTTTCCATGAACCAC  61 93
        sppA  609754 ..  609784 + -16.9  -4.11751   CGAGGGAGGCAGTCA       CGACAACGCCGGC TTCGC GCCGGCGTTGTCC       TTTTCAGCGGTTACT 100 54
 JH290_02635 NONE
 JH290_02640  612693 ..  612739 +  -7.9  -3.64703   GGCGGTGGTGGCCGT CGGCA-CAGCGGCCGGTGCTTGC GGT GCGGGCGCCG-CTGCAGGTGGCG TTTGCGTGGCCGCGC  63 418
 JH290_02690  622635 ..  622653 +  -2.4  -4.18488   TCAAATCTTCGGGCG             CGGATC CTGGTGT GATCTG             TTTCTTGGCGTGAGT  59 119
 JH290_02695 NONE
        rsmB  625156 ..  625170 +  -7.2  -3.21595   CGGTTTTTTCTACGC               GCTTTT GCT AAAAGC               TTCCTGATCCGCATT  56 4
 JH290_02705 NONE
 JH290_02710  628514 ..  628556 +  -4.7  -3.53224   GATAGCCGCGCCAGA AGCGCCACGCTGGCGCGAGC ACCA GCTTGCTCCAG-GTCGCCCG TTTGCCACGGGCGTA  52 180
 JH290_02720  630429 ..  630445 + -10.9  -3.36492   GCGGCGAGCGCTGCA              GTTGCAG CGC CTGCAAC              TTGTCCAGTTCGGCC  68 227
 JH290_02740  634348 ..  634388 + -10.9  -3.85698   CTTTGAAATGCGACG  CTCGCGGCCAAGCGCTGGC TCA GCACGCGCTTGGCAGAGCG  TTTCTCGCAAGCCCG  79 102
 JH290_02750  635919 ..  635933 +  -2.8  -2.89285   AGACCGGGCTTCACG               CTGGTA TAA TGCTAG               GTTCTCTTTCCAATC  42 79
        rpoD  637876 ..  637907 + -20.2  -3.35996   AGCGCACCTCGGTTC      CACAACAGCCCCGC TCAT GCGGGGCTGTTGCG       TTATGGGTAGGCATC  95 54
 JH290_02760  638481 ..  638499 + -11.7    -5.252   ATGCGCAGCAGAGAC             GCCCAGC CAACC GCTGGGC             TTTTTTGTGGGCGTG 100 156
 JH290_02765 NONE
 JH290_02770  640195 ..  640210 +  -4.6  -4.16842   GTTCCCAACGCTGTT              CCCGAG CACG CTCGCG               TTTGTTGCCGATGGC  66 347
 JH290_02780 NONE
 JH290_02785 NONE
       virB5 NONE
 JH290_02795 NONE
 JH290_02800 NONE
 JH290_02805  645531 ..  645546 + -11.8  -4.65895   CGAATGATGACACGG              CCCCGC TTCG GCGGGG               TTTTTCAGTGGGGCG 100 34
 JH290_02815  647413 ..  647432 +  -4.8  -3.68569   CAAAAAAGCTGTAGA            CCCGGCGC ATAA GCGCCCGC             TTCTTGCCTGACTCA  58 108
 JH290_02820  648149 ..  648192 +   -24  -5.40072   CCAGTTTCTAACCAG CGCCCCACGCTTAGCCATCC TGCT GAATGGCTAAACGTGGGGCG TTTTTTTGCCCGCAG 100 218
 JH290_02840  652535 ..  652545 +  -8.2  -4.15106   AGTTCGAACTGAGCG                 GCGC CGA GCGC                 TTTTGACCATTCCTG  72 182
 JH290_02850 NONE
 JH290_02860 NONE
 JH290_02865  658032 ..  658044 +  -3.4  -4.00042   ACCGCCGACTACTGC                CAGT CAACA ACTG                TTCTTTAGTCCGGAA  58 156
 JH290_02880  660788 ..  660806 +  -3.1  -4.13767   AATATCGTGGATTCG             ATGGAGA GCACA TCTCCAA             TTTTCACCTCGGCAA  61 77
 JH290_02885  661911 ..  661926 +  -2.4  -3.09015   ATCAGCCAGCTAATG              GTCGGC TTAA GCCGGG               TTCAGTCCATGTCAA  41 73
 JH290_02890  662817 ..  662832 +    -6  -2.78816   AGCACGACCGCACTG              GCGGCC AGCA GGGCGC               TATGATCGGGACTGC  46 479
 JH290_02895 NONE
 JH290_02900 NONE
 JH290_02905  665520 ..  665541 + -13.7  -4.15044   GTGGCGCGTGCAGCG           GCGTGGCGG CGTG CCGCTACGC            TTTCTTCGGCGACAC  93 50
 JH290_02915  666754 ..  666773 +  -2.7   -3.1372   CCGAGGTGCGTGTGT            AGCGCCG TCAGGC CGGTGCA             TATTGCTCGGACATG  43 24
 JH290_02925 NONE
 JH290_02930 NONE
 JH290_02935  670207 ..  670221 +    -7  -3.16971   CACCGCTTCAACCCG               CAGCGC AAC GCGCCG               TTGAATCTCTGCTCC  53 94
 JH290_02940  671220 ..  671248 +   -16  -3.96148   TGAGCGCCGAGGCGA        TACAGGGGCCGC CGTAC GCGGCCCCTGCA        TTTGTGATCACGCAG  95 38
 JH290_02950  673153 ..  673167 + -11.4  -3.57144   ACAGGCCGCTGGCCA               GCAGCG AGT CGCTGC               TTTGCGGCTCCAGCA  72 456
 JH290_02960  675784 ..  675807 +  -3.8  -2.64616   CGCTTTGCGCGGCCG          CAGGAC-CGCG CCG CATGAGTCCTG          TGCTGTGGGTGGCGC  41 8
 JH290_02965 NONE
 JH290_02970  678554 ..  678577 + -18.2  -3.56092   GTGTGCCTTCATCGC          GACAGCCGCC AACA GGCGGCTGTC           TTTCAGGAGTCCTGC 100 77
 JH290_02975  681039 ..  681081 + -11.9  -4.15044   CGCAGTCGTTTTGAT CGCTGCTCTAAGCGCGTCGC TTCG GCGCCGCGC-TACGGCTGCG TTTCTTGCCCGGCAA  86 330
 JH290_03005  688601 ..  688625 +    -5  -3.14647   CGGCGCAAGCTGCAG         TCCTGGTACAG CGGC CTG-ACCGGGG          TTAGATGTGCTGCAT  48 142
 JH290_03010  689386 ..  689396 +  -4.6  -3.33492   GTTCACGCCCTGCCT                 GCGG CGC CTGC                 TTCTAGACTCCATGC  50 118
 JH290_03015  689890 ..  689915 +  -3.9  -3.14344   GGCCGGTGCTCGGAA         TCGGCATGTAC CCCC GTACACTCCGG          TTCCTCCGCGCCGTC  47 82
 JH290_03020  690382 ..  690414 +    -7  -4.17048   GCCTTGGCGGGCGCA     GC-TGCTGCAGCCGGA GTC TCCGGC-GCGCCACGC     TTCTTTTCACGGCGC  72 438
 JH290_03035  691553 ..  691578 +  -3.1  -3.14344   GGTCAATGCTCGGAA         TCGGCAGGCAC CCCC GTACACGCCGA          TTCCTCCGCGCCATC  44 81
 JH290_03040  691684 ..  691722 + -17.5  -3.86897   GCATCAAGTGCAGGA  ACGACAACGGCGCGG-CCC TCA GGGACCGCGCCGTTG-CGC  TTTCTGCAGGATGCC 100 77
 JH290_03050 NONE
 JH290_03055  694114 ..  694137 + -14.6  -3.96216   GGACGTGATGGGAAA          CAAGGGCGGC CACG GTCGCCCTTG           TTCTTTGCGTCGGCA  89 127
 JH290_03090  703426 ..  703454 +  -4.6  -2.52464   GCCGGTGGCCGCACC       GCATTCC-CAGACC GGT GG-CTGAGGGGTGC       TGCCTTCACGCAACG  43 4
 JH290_03095  703761 ..  703779 + -13.1   -4.8048   CGGTGCAAATAACAA             CGCCCGC ATCGC GCGGGCG             TTTTTCATGTCGCGG 100 52
 JH290_03115 NONE
 JH290_03120  709196 ..  709209 +  -3.7  -2.80935   CACCAGGATGCGGCG               GCCGC GCAA GGGGC                TGTCGTGCATGGGAT  43 379
 JH290_03130  713105 ..  713120 +  -6.1  -3.21064   ATGCGGCAGGCGTGG              CGTCG GTGCAG CGACG               TGTCTTGGTTGTGCG  51 176
 JH290_03135  714361 ..  714377 + -15.1  -3.45571   AGAGCACATGAAGAA              GGGGCGC GCT GCGCCCC              TTGGTGTTTCAGCGA  85 65
 JH290_03165  718184 ..  718209 +  -5.3  -3.14132   GGCCGCTGCTCGGGA         TCGGCATGTGC CCCC GTACGCGCCGG          TTCCTCCGCGCCGCC  48 82
 JH290_03170  718327 ..  718337 +  -8.2  -3.86935   CAGCGCGGTCCGGCG                 CGCC ATC GGCG                 TTGTTGTAGTCGTTG  68 89
 JH290_03180 NONE
 JH290_03185  721807 ..  721817 +  -2.4  -3.22388   CGACTGAAAGGATTG                 CCGC CAT GCGC                 TTGCTCGCTTCCCTG  43 72
 JH290_03190  722336 ..  722350 +  -7.8  -3.13403   GAATTGCCGGCTTGT               TGCCGT TGC ACGGCG               TCTTGCTGCCAGGCC  56 181
 JH290_03195  724030 ..  724061 + -21.8  -4.07885   CTGAGTGATGAAACG      CAAAAGGCCAGTGC ACAA GCACTGGCCTTTTG       TTTTGAAGCGGGGTG 100 90
 JH290_03205  726164 ..  726199 +    -9  -3.08966   CACTGCGTAGACCTG    CAAGGC-TGCTTGCCGC GAT GGGGTACGCACGCCTTG    TTACGTCAGCTTTAA  60 191
 JH290_03235  733948 ..  733966 +  -4.5  -2.63715   GGCGGCATAATCGGG             CGTACGG GGTTG CTGTGCG             TGATATCGACTCAGT  41 31
 JH290_03240  735591 ..  735619 +    -3  -4.86731   CTCTTATCAAGTGCA       GAGCTTTCGCGCC TGTC GGCGCG-AGTCAC        TTTTGTTTCGGAAAA  75 192
 JH290_03245  737830 ..  737842 +  -7.7  -3.68222   GTTGCCCTTGGCATC                GGTCA GGG TGACC                TTCTTGCCGTTGAGC  63 477
 JH290_03260  740928 ..  740945 +  -3.3  -3.12351   CGGCCATTCGCGACA             CGCACTC CAAC GGCTGCG              TTCGCTATGCACAAG  44 328
 JH290_03265 NONE
 JH290_03270  742968 ..  742981 +  -6.7  -3.45366   GGCGAGGGCACCGCA               CCAAC GTCT GTTGG                TTGCTTCGTTGAAAG  57 227
 JH290_03280  744538 ..  744548 +  -8.2  -3.13728   TGCAGGCTGTGCAGC                 GGCG CGG CGCC                 TTGGGTGTGGCTAGT  58 164
 JH290_03315 NONE
 JH290_03325 NONE
         alr  753604 ..  753631 + -17.8  -3.03124   TCAACACGACCACAC        GACAACGGCGCT CTGA GGCGCCGTTGTC         TGTTCCAGCATGGCG  90 108
 JH290_03340 NONE
 JH290_03345 NONE
 JH290_03350  757377 ..  757414 + -25.8  -3.53012   ATGCAGTGCGCGTGA   TGCGATGCGATGCGGC CGGGTT GCCGCATCGCATCGCA    TTTCGGCGACCAGGC 100 40
 JH290_03355  757803 ..  757830 +  -3.4   -3.9941   CCGACCTGCAAGTCA        TGCCCTG-ACAGG CGG CCTTTACAGGGTG        TTTACTTCTCGCAGG  58 18
 JH290_03360  759257 ..  759271 + -12.8  -5.14965   CGGCACAAAAAAAAA               CCGGGC AGT GCCCGG               TTTTTTGCTGCGCGT 100 49
 JH290_03370 NONE
 JH290_03375  761476 ..  761519 +  -5.8  -2.74523   TCGGGCGCGGAGACC CCGCATGACCGCCACCACGCC GCT GCCGTTCTGGCCG-CAGGCGG TGATCTTCGACATGG  46 18
 JH290_03380  762220 ..  762259 +  -9.4   -2.8194   TTCGTCATCGCTGCG TCGCTGCGTCG-CT-GCG GCTGAG CGCGAGACCACGCAGCGA  TGTGCTCAGTGATTG  57 88
 JH290_03390  766016 ..  766034 +  -4.4  -3.40403   CGGGCGCACCTACTC             GCTCGGCC TGC GGGCGAAC             TTCTGATGCGCACGC  51 1
 JH290_03395  767626 ..  767659 +  -2.4  -3.76641   GCGCCGTGCAACACC    CGCTCCCA-GCCATCG CGGC CGA-GGCGTTCGAGCG     TTTCGATATTGCGCT  54 178
 JH290_03410  770029 ..  770048 +  -6.4  -2.75481   GGCATTCGGGACTGG            CAACAGCA GGAC TGCCGTTG             TCCTTGCGATTCCCC  49 72
 JH290_03415 NONE
 JH290_03420  771943 ..  771989 +    -3   -4.0162   GTGCGCTGCCGCAGT CC-GGCAGGCCCGCGCCTGCATCG CCC CGGCGC-GG-GCG-GTCTGCTAGG TTTGTCGTCTGCGGC  58 130
 JH290_03425  772952 ..  772962 +  -4.6  -3.14132   GATAGCAGCCATCAC                 CTGG CAA CCGG                 TTGCTGAGCGCCAAA  48 137
 JH290_03430  773959 ..  773974 + -11.8  -5.14563   AGCGCAAAGAAAAAA              CGGGCC CGAA GGCCCG               TTTTTTCATACACAC 100 69
 JH290_03440  775382 ..  775437 +  -4.7  -2.57881   GTGCGCGGCGTGGCA G-CC-CGTGCGCGATGCGCTGCGCT AGCTGGAA GGCGTGGCATATCGCTCACGCGGAC GTTCTCAGCGCGTTG  43 1
 JH290_03445  776415 ..  776427 +  -4.7  -3.65991   CCGGCCGGCCACAAT                AGGGG TTT CCCCA                TTCTGTTGCCGGAGT  55 118
        aceF  778206 ..  778231 +  -6.1  -2.52193   GCGACGCGTCCTGCT         GTGAGAG-CAGC GCT GCTGACGCTCGC         CTTGCTGGGTGTGCT  45 22
 JH290_03455 NONE
        lpdA  780733 ..  780751 + -17.4  -4.06904   TTTGTGTGCTGACAG             CGCCCCGC ATT GCGGGGCG             TTTGTCGTTACGTGG 100 53
 JH290_03465  782705 ..  782725 + -15.4  -3.05596   ACACCAAAACCACAA            CGCCCCGC ACAAG GCGGGGCG            TTGCGTCACACGGTG  81 376
 JH290_03475  784421 ..  784438 +  -3.3  -2.61199   GGCTGATTTTTCAAG             TTCTGGC TCTG GCCAGGC              GTTGATTCGAACTTA  39 3
        atpB  785253 ..  785275 +  -2.6  -3.61764   TGTACCTGAGCCTTG           CGGAAGACAG TCA CTGAGTTTCG           TTTCACCCTTCATCC  49 9
        atpE  785708 ..  785727 +  -9.2  -3.55444   GATGAAGGTCGGAAA            GCGTCGCC GTGC GGTGGCGC             TTTCACCCCTAAAGA  68 88
 JH290_03490 NONE
 JH290_03495 NONE
 JH290_03500 NONE
        atpG NONE
        atpD  790954 ..  790973 +  -2.8  -3.75332   TTGAGAGGAATGGAA            AAGCGCGCA GCA TGC-CGCTC            TTTCGATTCCCCACT  54 120
 JH290_03515  791470 ..  791500 + -21.3  -4.61231   AGACAGCGCACCACG       CGAAAACGCCGGC CTTGT GCCGGCGTTTTCG       TTTTTGGCGATGTGC 100 47
 JH290_03520  792587 ..  792603 +  -5.7  -2.61582   GTCGATCTGTTCGCA              TGCCAGC CGT GCCGGCG              CTTCTGCCTGGCGTC  46 411
        glmU NONE
 JH290_03535  795604 ..  795636 +  -4.6  -3.33815   GCATCGAAGCGCGGG      CAACGCTGCGCGAT GATTG AACGCGCTGCGACG      TTGATTGCAGGGGAT  50 6
 JH290_03540  795977 ..  796013 +   -10  -3.16564   CGCTTCGGCAATCTC   GCGCGTCAGCGCCAGGC CCAG GCC-GGTGCCGTTGCGC    TTGGTCGAATAGAAC  62 129
        glmS  806009 ..  806029 +  -3.9  -3.96148   ACTGCACAATTGCTA            GCAGCGT CGTGAGC ACGCAGC            TTTCTCCTACGCGGC  58 55
 JH290_03585  806962 ..  806995 + -14.5  -2.73364   ATGTGCGGTGCTGTC     TTGCCGCACTGCGTG GGGG CGCGCAGTGCGGCCC      TCATTCCCGTGGAAA  75 200
 JH290_03590  808246 ..  808264 +  -3.1  -3.26319   CAGGGCGTGGCTGGC            TCG-GCGA GCGG TCGCGCGG             TTCATCTAGGCGCTT  46 98
 JH290_03595  808469 ..  808507 +  -7.3  -4.09685   GTTAGCCGCTCTTAG   CAAAATGGGCGCAAGCC TATTC GGCCCACGCCCATTCTG   TTTTGCACAATCAAG  70 34
 JH290_03630 NONE
 JH290_03635  819863 ..  819886 +   -16  -2.53263   GAGCCTGCCAGGCGT          GCGCCTGCCG TCGC TGGCAGGCGC           TGCGTTCGCAGTGCA  79 39
        dinB  823528 ..  823540 +  -4.8  -3.36289   TGCCGCGGACGCACC                CGCA CGCAT TGCG                TTGATTGCAGTCGTG  50 71
 JH290_03655  824748 ..  824770 + -10.5  -3.36273   GGGCGGCCACGTGCG           GCCGGCAGC AGTGC GCTGGCGGC           TTCGTATTCGGCCAG  65 504
        bioD  826738 ..  826753 +  -3.2  -3.53091   GTTCCAGGTTGTCGC              GGGC CAGTTGCA GCCC               TTTCGGCCAGAGCGT  49 328
 JH290_03690  830368 ..  830404 +  -2.8   -4.4261   TGCTCACGCACGCGG   CAG-GGCAGGGGCAGGC ATGA GCGCGCCCCTGGAGCTG    TTTTCGTATTGGCGC  67 53
        maiA  831424 ..  831472 +  -2.2  -4.35518   CACGGAAGGATTCAC GGCCTGTCCCG-CGAGCGGTGAGG GCG CCGCGC-GCTCGACCGACCAGGCG TTTTGCTCTGGACTT  62 403
 JH290_03705  833169 ..  833200 +  -3.5  -3.01912   ACAGCCTCAACACCG      GGGAGGGCGGCCG ATGAAA CTGCGTCCCTTCC       TCTATATCGGTGTGC  43 9
 JH290_03710  834358 ..  834384 +   -13  -4.22475   TCCATCCCCAAGCTG        CGCCCCGTGCC TTTGCT GGC-CGGGGCG         TTCTTGTTTTAAGTG  89 311
 JH290_03715  834660 ..  834712 + -12.6  -4.36914   GCTAAGAACAAGTTC ACCGTCGCGGGCGGTGGC-GGCC TCCTCGTC GGCTTGCCACCGTCCGCGTCGCC TTTTCTGGCCGCCGC  95 53
 JH290_03720  836278 ..  836290 +  -6.2  -2.78547   GAGACGCACGGCATG                GGCC ATTCA GGCC                TGCTTGCTACAATCC  46 69
 JH290_03725  837515 ..  837531 +  -2.2  -3.62046   TGCCCTTGAGGCGTC              TCAGTC TCCAT GACAGA              TTCTTCGCAACGTCA  49 13
 JH290_03730 NONE
 JH290_03735  839770 ..  839782 +  -9.1  -2.79183   GCCGAAATGGTGGAT                GCGCT ATG AGCGC                TATGCTGACGGTCGA  57 17
 JH290_03740 NONE
 JH290_03745 NONE
 JH290_03750  844489 ..  844505 +    -3  -3.53343   TCTTGTGATACGCAA              TCTTGT GGAGG GCAAGA              TTTGAACACGCGCTT  49 4
 JH290_03755 NONE
 JH290_03760 NONE
         gmd NONE
 JH290_03770  848973 ..  849007 + -23.8  -3.19463   GGGCATTGAGAGCAA     TCGAGCTTCGGCTGGA AAA TTCAGCCGAAGCTCGA     TTAGTGCATGGTGGC 100 52
        rfbB  858320 ..  858346 +  -3.4   -4.2558   CGCAACGGTTTAACG         CGCGCACCCCCG GCA CGAGCCCGCGCG         TTTTGGTGCAGGCTG  64 28
        rfbA NONE
        rfbC NONE
        rfbD  860781 ..  860824 + -29.2  -3.06183   CGACGAAATGAGAGC CGCAAAAGCAAACAGCCGGG AATC CCCGGCTGTTTGCTTTTGTG TTGCATAAACCTGCA 100 79
 JH290_03845 NONE
 JH290_03850  865171 ..  865187 + -10.8  -3.09015   CGCTGCAATTCGCAG              GGCGCC GTCAA GGCGCC              TTGCGTGCATATCGG  66 48
 JH290_03865  869859 ..  869876 +  -5.5  -4.25104   GCGAGGACACCGCAC             CAGACAG TTTG CTGGCTG              TTTTACTGAAAGCCA  71 248
 JH290_03870  870501 ..  870520 +    -7  -3.01712   CGCCGATGCGCGCAA            CCCCGGCG ATCT TGCCGGAG             TCTTCGAAGGCGCGG  51 359
 JH290_03895  875238 ..  875254 + -15.1  -5.67283   GCGCCCAATAAAAAA              CGCCGGC AGT GCCGGCG              TTTTTTATTTGCCTT 100 53
        pssA NONE
 JH290_03920 NONE
        rimI  880551 ..  880570 +  -4.2  -4.79373   CCTCGCTGCTGTCTC            CGCG-TGTC TGC GTCATCGCG            TTTTGTCTTCTCTTG  75 500
 JH290_03930  881956 ..  881995 + -21.6  -3.97388   GCAGCGGTGCGAACG  CAGCACACAACGCCTGCA GCGA TGCAGGCGTTGTGCGTTG   TTTGTAATGGCGTGT 100 71
 JH290_03935  882454 ..  882483 + -13.5  -2.72379   GACAGTGCATGCATC       AAACGCCTGCGCC ATGT GGCGCAGGCGTCG        TGCTTCAGAGCTTGG  72 133
        lptF  890630 ..  890671 +  -2.1  -2.69151   TGGCCGGTTGTCGCG GCCGAGGGCGCGC-GCATGA AGC TGATGCCGCGGGTCCATGAC TGGTATGTGGGGCGC  39 7
        lptG  891729 ..  891772 +  -2.8  -4.19238   GAGTCTCGGCGTGGT TGTTCCGGCGGCGCAGTAGC TGAT GCGCCGGCGCCGGCTGAGTG TTTTCGGCTTGGCGC  61 3
 JH290_03975  892120 ..  892162 + -16.2  -3.22774   GCGTTGATGCCGCGT CGCTGCACTGTTGCGCAGCG GTG CGCGGTGCGGCGGTACAGCG TTAGTGGTCAATGTG  86 92
        xerD NONE
 JH290_03990  894833 ..  894858 + -16.9  -4.04318   CGGGACATCAACGAA         GGCCGGGATAC GTGA GTGTCCCGGCC          TTTGTGCTGTCTGGG 100 93
        purL  899156 ..  899196 + -23.6  -3.68529   CCGCGTTGAGAGCGT CAACGAACGGCCGTGTGCA GCAA TGCACACGGCCGTT-GTTG  TTTGGGTGATCGGAT 100 67
 JH290_04000  900228 ..  900250 + -13.4  -5.10064   TTTTGCGCAACCAAG           CCTGCTGGCG TCC TGCCAGCGGG           TTTTTGTGTCTTGCC 100 174
 JH290_04005  907732 ..  907744 +  -4.7  -2.52464   CAAGGCCTGAGGGGG                CGGGC GAG GACCG                TGGCTTGGCCGGCCA  43 90
 JH290_04010  909728 ..  909760 + -20.7  -4.58685   CTGCAATAGTGTGAC      CGAATGCCCCCGG CCAATCA CCGGGGGCATTCG      TTTTTCAGGGCCTTT 100 44
        gspE NONE
 JH290_04020  913032 ..  913075 +  -6.6  -2.64616   GGCGTAGATGTGCGC CTGGCAACCGGCGTGCGCATC GCT GATGA-CGCGCTGGCTGCCGC TCCTCTGCGTGCAAC  48 69
        gspG  913689 ..  913715 +  -4.2  -3.14132   AGTACCAGTAAGCAG         CGACCCATGCGC ATT GCGCGTCTGCCG         TTGCTGCACCCGCAC  47 30
 JH290_04030  914192 ..  914218 +  -3.7  -3.27029   CGGCCCGCTGCGGAC        GCCAGCGC-CATG AAG CATCAGCGC-GGC        TATTCGTTGATCGAA  48 13
 JH290_04035 NONE
 JH290_04040 NONE
 JH290_04045 NONE
 JH290_04050 NONE
 JH290_04055 NONE
        xpsN NONE
        gspD  921182 ..  921199 +  -9.9  -3.62522   CTTGGTGGCAGGATC             CTGTCAG GGGG CTGACAG              TTATTGCAACGGTTA  70 313
 JH290_04095  928644 ..  928654 +    -4  -3.41051   TGAACTGTGATACGT                 TTCT CTT AGAA                 TTGTGATCAAAGTCG  51 86
 JH290_04100  929728 ..  929741 +  -9.5  -3.32844   GCGGGCCATTCGTGG               CCGCC TGGT GGCGG                TTCTAGGGTAGGGCC  63 6
 JH290_04105  931675 ..  931705 +  -7.6  -3.21416   GAAGAGTGAGCCGGG     CGCCGTGC-G-CCGC GACA GCGGGCTGC-CGGCG      TTCCTGGTGGCGGTG  56 32
 JH290_04110  932940 ..  932953 +  -2.3  -3.29511   ATCAGGGGTCTGCCG               CATGC TCAA GCACG                TTCTAAACGCCTGGC  45 6
 JH290_04115 NONE
 JH290_04120  934080 ..  934095 +  -6.8  -3.30243   TGCTGCGTCGGAATG              CGC-GCG GTG CGCTGCG              TTCTCAGCAGTCGAT  55 60
        pncB  935771 ..  935785 + -12.8  -3.21099   TGGATCGAACTGCAG               GCGCGC CAG GCGCGC               TTGCTGGTCGAGCAG  73 116
 JH290_04135  936606 ..  936629 +  -8.1  -3.14132   CCGTGACTGACCGCA          GG-GCGTCCG GGTTA CGGGCGCACC          TTGGTGGCACACACG  58 157
        arsC  939974 ..  939989 +    -6  -3.57144   ACGGCGCCGTCACGC              GCCCGC CAGC GCAGGC               TTTGCGCCTCCCCGA  57 117
 JH290_04155  940701 ..  940719 + -13.1  -5.14563   CGCGCATAAGGAAAA             GGGCGCC CTCAA GGCGCCC             TTTTTTCATCCAGCC 100 74
 JH290_04165  943235 ..  943265 + -11.9  -3.92641   TCAGGCCACAGGCAT      CAC-ATGGGCGCAC TTCG GTGCGCCCATGGCG       TTTGTGGGTCCCGTT  81 77
 JH290_04170  944675 ..  944695 + -10.4  -3.24902   GTGATTCGGGATTGG            GGATGCGC GGCAA GCGCGTCC            TTGCTCCTGCTATTG  64 54
        nrdR NONE
 JH290_04180 NONE
        ribD  946878 ..  946895 + -14.1  -5.47159   ACGCCGCATAAAAAA             GGCCCCG CATG CGGGGCC              TTTTTTATCTTGAGC 100 60
 JH290_04195 NONE
        ribB  949878 ..  949903 + -13.3  -3.09492   GCCCGGCCGTGGCGT         GCAGACCGGGCG CAT TGCCCGG-CTGC         TGTTAAACTTCCCGC  71 76
 JH290_04205 NONE
        nusB NONE
        thiL  951985 ..  952023 +  -5.3  -4.58213   TTGGCGCTGTGTACT  GCGGGCTGGGTA-GGCGCA GGG TGCGTCTTACGC-GTTCGC  TTTTATGGTTCATTC  74 46
 JH290_04220  954188 ..  954210 + -12.7  -2.79796   TTGATACTGAAGAGA           CTCGGCGGC AGGAG GCTGCCGAG           TCTCGTCGGATGGGA  68 51
 JH290_04225  955097 ..  955113 +  -2.3   -2.6914   GATGCGAGTGCGCTC              CAATG ACTGAAA CATTG              CTTGTCTACGCGCTG  39 39
        kdpA NONE
        kdpB NONE
        kdpC NONE
 JH290_04245 NONE
 JH290_04250  963079 ..  963092 +  -4.5  -4.75372   GGCGCTATCTCATTA               CGGCT GCGC AGTCG                TTTTTGATAGCTGCT  75 63
        rsmI  968786 ..  968800 +  -6.4  -3.29144   CCAGACGCAATTGAA               CAGGTG GAG CATCTG               TTGTCCGAGAAGTCG  55 357
 JH290_04280 NONE
        rnpB  969541 ..  969552 +  -7.2  -3.30124   CCGCCACCTTCGTTC                GGGC GTTC GCCC                 TTCTCGAAGGTGCCC  58 35
        mraZ NONE
        rsmH NONE
        ftsL NONE
 JH290_04320 NONE
 JH290_04325 NONE
        murF NONE
 JH290_04335 NONE
        ftsW NONE
        murG NONE
 JH290_04350 NONE
 JH290_04355  984289 ..  984314 + -11.1  -3.22223   TTCGGGATTGGTGAA         CAGCGACGCCG CGTG CGCCGTTGCTG          TTGCTGCTGCCGTTA  67 63
 JH290_04360 NONE
        ftsA NONE
        ftsZ  988038 ..  988065 +   -17  -4.07885   CCTGTCCTGTCCTTT        TCTGCCGGGTCG GTGC CGACCCGGCAGC         TTTTGCAGCGGCGTG 100 99
 JH290_04375  989602 ..  989655 +    -5  -4.07568   GGTAACAGGGGGCGC AACTGCCGATCCAGCGCGTCGAGC CACAAC GCTCGGCGCAGAGGGTCGCCAGCC TTTTCCCCGAGCAGG  62 525
 JH290_04385  990751 ..  990769 +   -16  -4.05788   GGGTGTTGCCATCGA             CAGGGCGC AGT GCGCCCTG             TTTCGTTTACGGCGG 100 93
        secA  993612 ..  993656 + -14.2  -3.54676   TGCAGCCCGTGACGC GGGCTGCACACCCAACGTCC GCGCA GGACGCTGGGTGAACGGTCC TTGCTTTCGATCCCT  85 58
 JH290_04395  994431 ..  994454 +    -8  -3.63991   GGTTGGAGCGGACTG          CGGAGCCGGT TGCT GCCGGCCTCG           TTGTTCCCAATGCTG  62 72
 JH290_04400 NONE
 JH290_04405  996455 ..  996469 +  -4.9   -3.1355   GATCGCTGGCAGGTG               CGGCC GCAGA GGCTG               TTGCGTCTGCCTCCC  47 436
 JH290_04425  999670 ..  999701 +   -18  -3.05963   CCGAGTAACTGGCTG      CCTGCGCGCCTACG GAAA CGTGGGCGCGCAGC       TGTTGGCGTGGCGAT  90 33
 JH290_04430 1001584 .. 1001614 +  -7.5  -4.10161   GCCGATTCCGAGCAC      CGGCCGCGC--CCGC CTG GCGGCTGCGCAGTCG      TTTTGAAAGCTGCTC  70 278
 JH290_04445 1003368 .. 1003387 +  -5.6  -3.05844   AGACGCCATTGCTAG            AGCGTCTG AGAA CAGGCGCG             TCTTGACCTACCGCG  49 119
 JH290_04480 1008210 .. 1008224 +  -4.2  -3.05463   TCACCGCAGACCAAG               GCGC GGGAGGA GCGC               TTGCGTGAGAACGAT  45 140
 JH290_04485 1009227 .. 1009262 +  -9.8  -2.79183   CGGCAGGTGCAGCCG    CTCAGAGAT-CACTCAG AAT CTGAGTGCGTCGCTGGG    TGTACTCGGCGTCGG  60 449
 JH290_04505 1014211 .. 1014238 + -11.4  -2.88861   TCAAGCGCCCGTCAA        CGCGATGGT-TCA AGG TGAAACCGTCGCG        TCTGTCGCGATCATC  64 203
         ppc 1017019 .. 1017033 +  -3.4  -3.14564   AGGCGTGCAGAACAC               CGGCTG ATC CGACCG               TTGGTCGGAGAGTGC  44 19
 JH290_04515 NONE
 JH290_04520 NONE
 JH290_04525 1020789 .. 1020814 +  -4.6  -3.06501   ACTGACGGTCTGTCG         CGGCTGCGCA ATCGCC TGGGCGGTCG          TTGAGTGACGGTGTG  47 36
 JH290_04530 NONE
 JH290_04535 1022311 .. 1022361 +  -5.4  -4.19817   GGTAGCCACGCTTAG TGGACTACGCCGC-GCCACGCATCG CTTG CG-TGCGTGGCAGCGGTG-GGCACG TTTTGCCTGACTCGG  65 34
 JH290_04540 1025916 .. 1025939 +  -6.6  -3.59979   CGCGCGCAGGCCAGC          GCGGCTGCGG GCCG CTGCAGCTCC           TTTGCGCTGGCAAAC  59 86
 JH290_04545 1027220 .. 1027234 +  -5.7   -3.9122   CGCATTTGTGGGCGA               TGCTG AGTGC CAGCA               TTCTTTAAAGGCATG  62 69
 JH290_04555 1030696 .. 1030706 +  -4.6  -3.73775   TCCAATAACACCGGT                 CTCG TAG CGGG                 TTTCATGCGGCTGCG  58 33
 JH290_04575 1036529 .. 1036551 +    -9  -3.14211   GCGGCACCGGTCAGC           TGGTGCGAGC GCT GCGCGCCCCA           TTAATGGCAAGCAGT  61 220
 JH290_04580 1037138 .. 1037182 + -10.6   -3.2964   TGCGTTCTCTCTCCA CCCTCGGCTAACGGTCGCGGC GATT GCCGTCTGCGT-GGCCGAGGG TTCTCCCAAAGGTTT  66 108
 JH290_04585 NONE
 JH290_04590 NONE
 JH290_04595 1041351 .. 1041363 +  -3.3   -4.3255   GCGCAAGCGCTCCTA                CGTGC AAG GCAGG                TTTATTCCTTGAACC  64 344
 JH290_04635 1049799 .. 1049817 +    -3  -2.71791   GATCGACCCGAATCC             GACGCGAA GTC TTCACGCC             ATTTCCACCGCCAAT  40 53
 JH290_04640 1050593 .. 1050616 + -19.6  -3.13403   GGCCTGATGTCGCTG          GCCGGCTGCC GCCT GGCAGCCGGC           TGTTCCTCAAGGCGC  95 34
 JH290_04645 1052059 .. 1052072 +  -2.3  -3.13403   GCCGATCGCTACAGC               GCTAG TTGC CGAGC                TGTTGCTACAGAAAA  43 87
 JH290_04655 1053660 .. 1053684 +  -5.6  -3.41602   CATGCCGGCTTGACT          GGCACCGTGG CATGC TCGCGGTCCC          TTGTCATGGAATCGC  55 98
 JH290_04660 1054650 .. 1054663 +  -5.2  -3.65693   GGCAGTTATGTCGAT               GGGC AATGCC GCCC                TTTGGAGTCTGTAAT  55 351
 JH290_04665 NONE
 JH290_04670 1056114 .. 1056133 +  -2.8  -2.87344   GCCTCGCTTTTTCGT            GATC-CGCG GTC CGCATGATC            TATCTGCACGCCATC  42 66
 JH290_04675 NONE
 JH290_04680 1057850 .. 1057872 +  -4.9  -3.62096   GCGCTGCGCTACGCT          GACGCTCTGT TTGA ACGGA-CGTC           TTTGCCCTCATGAAA  55 66
 JH290_04685 1058607 .. 1058621 +  -5.6  -3.20382   CTCGCGACCCGGCAC               CTGCAC CAC GCGCAG               TTCGTCGGTATCCAG  49 256
        ubiH NONE
 JH290_04740 1070822 .. 1070868 +    -7  -3.24708   CTGCTGTGGAAGCGC GCGTCCGGCAACGCGTAGGCGC ACT GCGCTGACATTCTGCTGGCCGC TATGTTTAAGCGCTA  53 8
 JH290_04745 1071713 .. 1071736 +  -4.5  -3.95073   CAATGCACGTGCGCT          GACGTCAGCG TCGCC CGCCG-CGTC          TTTATCCGTATCACC  58 80
 JH290_04750 NONE
 JH290_04755 1073546 .. 1073593 +   -14  -3.18383   CATGCTGTGGCGTTG CGTGTTGGCATGCTCGCGGAAC AATA GTTCGGCGCGCGCGCCATCGCG TTGCTCGATGGCGGT  76 224
 JH290_04765 NONE
 JH290_04770 1075723 .. 1075742 + -10.6  -5.63236   CTCACGCACGTCCAG            GGCACGCG ATTG CGCGGGCC             TTTTTGTTTTTCCCT 100 47
 JH290_04775 1077055 .. 1077084 + -15.7  -3.05596   CGGAATCACAAGAAC       CAAGCGGGCG-GCG ATA CGCGCGCCCGCCTG       TTCGATGGCCGGCTG  81 305
 JH290_04815 1085758 .. 1085798 +  -3.7  -5.14563   GATTTCTCGGCTTGC  TGCTCGAACAGGTCCAGGC ACA GCCGGGTCTCGTCCCAGCG  TTTTTTCATCGGCAA  83 379
 JH290_04855 NONE
 JH290_04860 1093022 .. 1093060 +  -7.3  -3.53091   CGGCTGACGCCAGCC  CGGCGGCGCGGCATCGGGC GAG GCCAG-TGCC-CGCAGGCG  TTTGAACAACACCGT  60 179
 JH290_04880 NONE
        msrA 1097578 .. 1097607 + -14.3   -4.9725   TGCCAGGCAACTTGC       AATGGCTACGCCG GAGA CGGCGTGGCCATC        TTTTTGTGTGCCAGT 100 145
        prmC 1104917 .. 1104961 +  -9.8  -3.83347   CGCGTCACGCTGGGG CAGTGGCCGCACGCTGCGGGG TGAT CCCGGC-GCATGCGGCAGCGG TTCTGTTTGCACTGT  76 2
         pip 1106102 .. 1106117 +  -6.8  -3.32844   GGCCGCTGGCCAAGT              TGCAGC AGTA GCTGCG               TTGTCGAATACCGCG  55 71
 JH290_04950 1111531 .. 1111549 +  -8.1  -3.29511   CGCGCATGCTTAACC             TTGGCCG CCGCC CGGCCGA             TTCTGGCAAGCTCCA  60 28
 JH290_04955 1114141 .. 1114153 +  -9.1  -2.69545   CGCCAGGCGGGCGCG                GCCGA TGC TCGGC                GTTCTCATGTATCCG  57 68
 JH290_04960 1114233 .. 1114245 +  -3.3  -2.62263   GCTCCGTTGTGTTAC                CCGCT CTA AGCGC                TGCTGTCAAACGGCT  39 24
 JH290_04965 1114726 .. 1114736 +  -4.6  -4.08216   GGCGGCGGCAAACTG                 GCGT TCC GCGC                 TTTTGGCCGGGGTGA  62 393
 JH290_04975 1116570 .. 1116600 +  -7.5  -4.28994   GCCGATTCCGAGCAC      CGGCCGCGC--CCGC CTG GCGGCTGCGCAGTCG      TTTTGATAGCTGCTC  76 513
        sufT 1119934 .. 1119944 +  -4.6  -3.92625   CCATGTCTTGCACGT                 GGCG CCG CGTC                 TTTCCTTCCGCTCTA  60 51
 JH290_05010 1121082 .. 1121107 + -19.7  -5.75342   GTCAAGCCAAATCAG         GGCCCCTGCGC GTCA GCGCGGGGGCC          TTTTTTTTGCGCGCA 100 49
 JH290_05015 1123172 .. 1123209 + -12.7  -3.03124   TCCTCATCTGCAATC   CACTCCCA-CGCCTACCG ATT CGGCAGGCGCTGGGGATG   TGTTGCCGCGTGGCC  71 81
 JH290_05020 1124865 .. 1124882 + -14.1  -5.24129   GTCTCTCTCTCTTGT             GCCCCGC CCAG GCGGGGC              TTTTTTGTGGGCGCG 100 127
 JH290_05025 1126831 .. 1126862 + -19.5  -4.17296   CGTGCGAGGCAGTGA      CGCGCTGGCGCCT GAGGCA AGGTGCCAGCGCG       TTTCTATGTATGGCG 100 62
 JH290_05040 1129599 .. 1129617 +  -2.2  -3.14211   GACGGTGTGAGTCCA             CGGCCAGT GGA GCGGGCAG             TTCGTCCGCCCCACT  43 107
 JH290_05055 NONE
 JH290_05060 1132581 .. 1132604 +    -3  -2.52516   TGGGCATCACCGGCA          AG-GCCGGCTG ATG CAGGCGGCACG          CTTCATCGTCACCGG  39 15
 JH290_05065 1132878 .. 1132890 +  -3.4   -2.8372   AGTTGCCTGAGCAGG                GCAA CAGAC TTGC                GTTTCCTCGCCGATA  42 46
 JH290_05070 1134460 .. 1134473 +  -3.8  -3.75024   AGCGGATCTGCGTGG               CGCT CGGCAA AGCG                TTCTTCCTGCTCGGC  54 317
 JH290_05100 NONE
        lolB NONE
        ispE NONE
 JH290_05115 NONE
 JH290_05120 1144688 .. 1144715 +  -9.8  -3.14132   TCCGGGTGCCGCAAT        CCGTCTCTCCTG GTCG CGGGGGAGACGC         TTCATCGCCGCGAGG  64 63
 JH290_05125 1145426 .. 1145439 +  -2.3  -2.89881   CTGCGCAGCACCGGC               TCCGG TATA CCGTA                TGTCTGCACTACGTC  40 63
         pth 1146022 .. 1146077 +   -28  -2.54896   CCCCAAAAAAATAGA GAATGGGGAATGGGGAATGGTAGGAGC GCT GCTC-TGCCATTCCCCATTCCCGATTC TCCATTCACTGGACA 100 27
        ychF 1147192 .. 1147223 +   -13  -3.08173   TTCAACGTCTGAGGC      GAT-GCGCGCGGCCC GCA GGGGCGTGCGCCATC      TTCGGTGAAATTGCT  71 29
 JH290_05140 1147447 .. 1147461 +  -7.8  -2.71731   TGTTGTGTCTTGCAG               TTCCCG GCG CGGGAG               TAGTTCAACGGTAGA  52 47
 JH290_05145 NONE
 JH290_05150 NONE
         tuf 1148914 .. 1148949 + -11.2   -3.7014   GCGGCTGGATTCAAG    CGAATGGCGGGCCGG CTGAACC TCGGTCCGCC-TTCG    TTGTCTTAGGGTTTG  76 65
 JH290_05160 1149048 .. 1149060 +  -3.3  -3.34517   GTTCGAGTCCCTCCT                GGCGT GCC ACTCC                TCTTTCCGGCCCAGT  46 17
        secE 1149491 .. 1149501 +  -3.2  -3.20435   TCGTCATCCAGAAGC                 TCAC GCA GTGG                 TTCCTGGCTCGTTAA  44 0
        nusG 1150091 .. 1150119 + -10.4   -2.5511   GAGAAGGGCTGACCC       TGGC--GGGTGCCT GCT AGGCACCCTTGCCA       ATTACTGCTATAGTG  59 29
        rplK NONE
        rplA 1151499 .. 1151528 +  -8.5  -4.08216   TCACCGTGTGCTGGG       AGTCCGTTCCCTC CTTT GGGGAAACGGACA        TTTTGAAGGCGATCG  73 109
        rplJ NONE
        rplL 1152960 .. 1152984 + -16.4  -3.60792   TGGTGATGCACTGAA          GGCTGGGGGC GTAAA GCCCCCGGCC          TTTGGCCGTTCCGGA  91 68
        rpoB 1157335 .. 1157359 + -18.5  -2.78816   GTGATCGGACAGGAC          CCGGGGGCCGC CAC GCGGCGCCCGG          TGTCCTCCCGCATGA  86 37
        rpoC 1161786 .. 1161808 + -14.1  -3.71672   ATACTTCCCTGTCTC           GGCGGGCCG TTATT CGGCCTGCC           TTCGTTTTCATGCAA  84 170
        rpsL NONE
        rpsG 1162743 .. 1162761 +    -6  -3.53012   GGTAACGGGGCCCTT             CAGCAC CATATGA GTGCTG             TTTGCGACGCGCAAA  55 54
        fusA NONE
         tuf 1166253 .. 1166272 + -12.8  -5.55769   GGAAAGTAGAGAGAA            GGGTCGGC GCAA GCCGGCCC             TTTTTTATTGTGCAG 100 70
        rpsJ NONE
        rplC NONE
        rplD NONE
        rplW 1168545 .. 1168566 +  -5.1  -2.50994   CGACGTAACGGCCAA           GGCCTGAGGT CCA ACC-CATGCC           ATTGATGAAGTTCAA  43 19
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP NONE
        rpmC NONE
        rpsQ NONE
        rplN NONE
        rplX NONE
        rplE NONE
        rpsN 1173299 .. 1173320 + -12.3   -4.5265   TTCTGTTCAACAAGG           GAGTCCGAC GCAA GTCGGGCTC            TTTTGTCGTATACTT 100 80
        rpsH NONE
        rplF 1174426 .. 1174445 +    -5   -3.9444   CCGGCCATGCGTGGT            CGGG-TTCG TAC CGAAGCCTG            TTTCCTTCAGCTTTC  60 60
        rplR 1174883 .. 1174903 +  -2.3  -3.80733   ACGTCCACCGCCGGC            AGGGTCTGC CGG GCCGTCCCA            TTCTTCTGCAATGGC  52 75
        rpsE NONE
        rpmD NONE
        rplO NONE
        secY 1177869 .. 1177882 +  -5.9  -3.02511   ACTCAGTTGGAGAAT               CGCGT CATG GCGCG                TATTGCAGGCGTCAA  49 352
        rpsM NONE
        rpsK 1178638 .. 1178656 +  -3.1  -2.71416   CGTCGCGTCTAAAGG             GAGCGAT AAGAA ATGGCTC             GTTATATCGGTCCTA  40 29
        rpsD 1179255 .. 1179273 +  -3.8  -2.75481   CAACGAAGCGCTGAT             CGTCGAGT TGT ATTCGAAG             TAATTCACATTGGAG  42 4
        rpoA 1180339 .. 1180362 + -14.6  -5.81412   GTTAATGCAACACCG          CATGGGCGTC TTCG GGCGCCCATG           TTTTTTTTACATCGA 100 36
        rplQ 1180922 .. 1180939 + -14.1  -4.93365   AAGATTTTTGAAGGA             GCCCGGC TGAT GCCGGGC              TTTTTCGTTGTGGAC 100 59
 JH290_05365 1183229 .. 1183245 +  -2.1  -2.53822   TCTGATGGGTCCGGC              TGCGGCC GGC GTCTGCG              ATCTTCTGGAGTACA  37 36
 JH290_05370 1184710 .. 1184734 +  -4.9  -3.14344   GGCCGCTGCTCGGAA          TCGGCATGTAC TCC GTACACTCCGG          TTCCTCCGCGCCGTC  48 81
 JH290_05375 1184855 .. 1184878 +    -3  -3.65827   TCCTGCAGCCATCCC          TCTTTCCCCC CACA GGAGGAACGG           TTTGACTGCCGATTG  51 91
 JH290_05380 1186247 .. 1186277 + -16.8  -3.21416   GCGGTGCGCTTGGCG       CGTAGCCGGGCGCG AAC CGCGCGTGGCTGCG       TTGCTCGTAGGCGTA  84 265
 JH290_05400 1190976 .. 1191002 + -19.5  -2.57132   CTGATCTCACCCCGC         CGAACGGCCGC CACGT GCGGCCGTTCG         CTTGTCAAAGCGCCG  90 37
 JH290_05405 1192094 .. 1192112 + -17.4   -5.9873   GATGAGATAGAAAAA             CGCCGGGC ATT GCCCGGCG             TTTTTTTTGTGGTCA 100 52
 JH290_05435 1201760 .. 1201776 + -10.8  -4.84918   CTGCTTCATACAGAA              CCCGGC CTCGT GCCGGG              TTTTGTCTTTGTGGG 100 53
 JH290_05440 NONE
 JH290_05445 1203343 .. 1203380 + -11.9  -2.72344   CAACGGCCCGTGCGT   CGCC-TGCGCCGTTGGCA TCG TGCCGGCGGCCCTTGGCG   TGATTGCAGCTGGCG  66 59
 JH290_05460 NONE
        cysT NONE
        cysW NONE
 JH290_05475 1209054 .. 1209070 +  -5.7  -2.78596   GGTCGATGAAAGGGA              GGCTGAG GAG CACGGCC              TGTCGTCGAAGGATG  46 171
 JH290_05480 1210064 .. 1210093 + -18.7  -3.53811   TCACTGAGGCTGACA       TGCAAAAGGCGCC TTCC GGCGCCTTTTGCG        TTTCACAGCGGTGGA 100 171
 JH290_05495 1216316 .. 1216334 +  -7.4  -2.79183   CTCGGTCGCGCCTGA             GCCAGC CGCGGGT GCTGGC             TGTCGTGCGGGTGAC  52 26
 JH290_05500 1217191 .. 1217205 +  -2.8  -3.12351   ACCGTAACACCGCCC               CGCT GGCCAAA AGCG               TTCCGTATGACGGCG  44 85
 JH290_05505 1217711 .. 1217721 +  -8.2  -2.70932   GCATGCGCATCGCAT                 CGGC CCT GCCG                 TAATTCGGCGCACGC  54 12
 JH290_05510 1218310 .. 1218333 +    -6  -3.02511   ATCTACGGTCCGCAA          TGACGCGCCAC GGT GTGGA-CGTCA          TGTTGGCCGGATAGG  49 23
        folC 1219773 .. 1219785 + -10.5  -2.64099   CCATTGAGGTCGGTT                GCCGG GCG CCGGC                CTTATAATCGCCGCG  59 34
 JH290_05520 1220989 .. 1221003 +  -5.7  -3.04792   GCGTCACGAGGTTGG               CCATG ATCGA CATGG               TGTTGGGCGTCATCA  49 115
 JH290_05525 NONE
        purF NONE
 JH290_05535 1224203 .. 1224223 +  -3.3  -4.42238   CGACGCTGCTTGTCG           TG-CGTGC AGTGAA GCACGCCA            TTTTGATTAGGGTGC  67 114
 JH290_05545 1225972 .. 1226009 + -13.4  -2.87132   TCCGCTGATCACTGC   CCAGC-CTGCCCGGCAC CACGC GTGCCGGGCAGTGCCGC   TATATCCGCGCACGC  74 33
 JH290_05550 1226813 .. 1226833 +    -6   -3.5944   TGGTATCCACCTCGG            CCGGCGCC ACGTC GGTGACGG            TTTCGAACTGTGCCT  56 322
        grxC NONE
 JH290_05600 1237864 .. 1237897 + -11.7  -4.07568   GCCTCGCCCCGCACG     CCCGACGCGCCGTCCT GTG AGG-CGGCGTGTTGCG     TTTTGGGGGCGCGCC  83 44
 JH290_05605 1239183 .. 1239207 + -20.1  -4.60041   TAGATCGCACAAAAA          GAAAGGGCGCC GAC GGCGCCCTTTC          TTTTTGGAAGTGGGT 100 50
 JH290_05615 NONE
 JH290_05620 NONE
 JH290_05625 NONE
 JH290_05630 1240694 .. 1240714 + -14.7  -5.27335   GCCCACCAATTAAAA            GGCATCCGC AGT GCGGGTGCC            TTTTTCTTTGCAGGC 100 33
 JH290_05635 1240857 .. 1240877 +    -9  -3.53012   CGCACCAGTGCAGCG           CGGCCGTGA ATGT TC-CGGCCG            TTTCACGCGCACCGC  65 34
 JH290_05640 1242328 .. 1242338 +  -8.2  -3.53012   GCTTTCGTTCCAGGA                 CGCG ATT CGCG                 TTTAACGCGACCGCG  63 10
        clpP 1243098 .. 1243132 + -16.5  -2.80252   TGCTGGAAAAACTGG    CAGGGTCGGGCTGGAC GAAT GTCCT-CCCGACCCTG     TGCTATTCTCGAAAT  81 59
        clpX 1244552 .. 1244580 + -21.8  -5.40072   TACTTGCAACACCTC        GCCGATGGCCCC ATAAC GGGGCCATCGGC        TTTTTTTACGCCCCA 100 101
         lon 1247157 .. 1247172 +  -8.2  -2.64616   TGGGTTTTGGCTTGC              GCGCGC TTGG GTGCGC               TGGTATAAATGCACG  53 90
 JH290_05660 NONE
 JH290_05665 1247693 .. 1247710 +  -3.3  -2.74012   GCAAAAGTTTCAAGC             GCGGAGC GGTA GTTCAGC              TGGTTAGAATGCTGG  40 53
 JH290_05670 1247779 .. 1247806 +  -8.4  -4.37092   CTCCGCCAGTTACAC        CGAAGCCCCTGA GCGA TTGGAGGCTTCG         TTTTCTCCACAGCAT  79 33
 JH290_05675 1247955 .. 1247977 + -14.1  -5.75342   CGCCAGTTTTTCCAA           GCCCTCGGC CTTGT GCCGGGGGC           TTTTTTTTGGCCGAG 100 36
 JH290_05680 1250109 .. 1250125 + -10.8  -4.86731   CGCTAAAACGGAAAA              GCCCGG CATGA CCGGGC              TTTTCTTTGGCCGAG 100 54
 JH290_05695 NONE
        rnhA NONE
        dnaQ 1255467 .. 1255503 +  -6.6  -2.81738   ACGCATTCCTGGGCA   CTGCAATCGGCCTGCGAC AGC GTTGC-GGC-GATCGCGG   TGTCATCCACTTCTT  48 148
 JH290_05715 1256593 .. 1256608 + -11.8  -5.46706   GTCATCGCTACATCA              GCCCCC GCAA GGGGGC               TTTTTGTTTTCGGGT 100 250
 JH290_05720 1257065 .. 1257103 +  -9.5  -3.01712   TCCTACCAGGACTAC  CGCGCCAGCGG-C-GCCTG ATG CGGGCTGATCGTCGGCGCG  TGTTGCAGGCGCGCC  60 8
 JH290_05730 NONE
 JH290_05735 NONE
        moaA 1260745 .. 1260769 +  -4.2  -2.80816   GGTGAGCGCTGCTGA          CGCAGTTGCG CGACA TGGAGCTGCG          TCTGCTCGATCCACA  42 36
 JH290_05745 NONE
        moaC 1261615 .. 1261645 +  -3.8  -3.35522   AGCGCGATATCGGAG       CTGCACGATGAGCG CCA CCATCACCGTGCTG       TATTTCGCCAGCTTG  48 15
 JH290_05755 NONE
 JH290_05760 1262371 .. 1262384 +  -8.1  -3.25823   TTGAATCGACAGGTG               CCCAC GCGG GTGGG                TTCCTCTGCGCCGCC  60 89
 JH290_05765 1262645 .. 1262668 +    -8  -3.27475   GCACGTTGCCGACAT          CCAGGGCCAC GTCG GTGGCCCACG           TCTTATGGTGGCCCC  58 70
         ffs NONE
        dnaX NONE
 JH290_05780 1265224 .. 1265239 +  -6.1  -3.28712   CATGCAGTTGCCGCC              CGGCA TGAAGC TGCCG               TTCTGAGCGAAGGGA  52 4
        recR NONE
 JH290_05790 1266447 .. 1266467 +   -14  -5.02502   ACGCCACATACAAAA            CGCCGCTC CCTGT GAGCGGCG            TTTTTGTGTCATCTC 100 79
 JH290_05815 NONE
 JH290_05820 1273297 .. 1273311 +  -2.1  -2.52464   CTAAGTCAAATCCTT              TGCCGC GCAT GCG-CA               TGGGTTCGAAACCGA  37 37
 JH290_05825 NONE
 JH290_05830 1274244 .. 1274274 +  -9.6  -3.06796   TGAACTCGGCGGCAC       CATGGGCGATACCG CCA CGGCCTTGCCCGTG       TTGGGTGCGCTGGCG  60 298
 JH290_05845 1276784 .. 1276811 +  -2.6  -3.01712   CCGTTCGCGGCGCTG        GCGGC-GTTGAAG AAA CAGTAACCGCCGC        TGTTAAGGGCGGAAA  41 5
        rpmF 1277097 .. 1277114 +  -4.7  -4.07885   TCCAAGAAGATTGAT             CCGTGGC ACCC GCCGCAG              TTTTGCAGGCGGGTG  63 27
 JH290_05855 1278171 .. 1278197 +  -9.4  -4.81249   CTACTGATCTGCGCA         GGCACTGCCG CGTTTGC CGGCGGTGTC         TTTTTGCGTTTGAGG  93 34
        fabD 1279727 .. 1279740 +  -2.3  -2.53392   ACGCCGGCGCGCTGG               ATGCG TGGG CGCAC                TGAGTTGACCAATTT  37 9
        fabG 1280657 .. 1280678 + -10.1  -5.93809   TACACTATCCAACGC           GGCCATCGC AGCG GCGATGGCG            TTTTTTTTGTACCAC 100 117
        acpP 1281016 .. 1281041 + -14.7  -4.59773   CTGCGTCAGACATCC         CATGGGGCCGC TGAT GCGGCCCTGTG          TTTTTGAGCGTCAAC 100 81
        fabF 1282369 .. 1282408 + -15.8  -3.31802   GCAATGGCGCAGGGT  CGCGATGGGCTGCAACGCG TCG CGCGTT-CGGCCCGTTGTG  TCTTCTGCTGATTTA  84 58
 JH290_05880 NONE
        mltG NONE
 JH290_05890 NONE
 JH290_05895 1286366 .. 1286376 +  -2.4  -3.68619   GTGATCGTGGGGCGG                 CGGC ACG GCGG                 TTTCAGTGCGTTGCG  52 113
 JH290_05900 1286545 .. 1286563 + -11.7  -4.13654   TGATGTCGAAGACCA             GGCCACC CTTGC GGTGGCC             TTTGTCGTTTCAGGG  86 41
 JH290_05905 1287167 .. 1287192 +  -4.7  -3.01745   GCCGATGAATCCCAA         C-CGGCCGCAAT GGG ATTGCGGTGGCG         TCTGCTTATTGCAGG  47 139
 JH290_05910 1288029 .. 1288063 + -10.1  -3.04792   GCAGTCGCTGCAGCG    CAGCGGGCGAGAGTGGC AAT GCCG-TCTCGC-TGCTG    TGTTGCGCGTAGTGC  60 464
        prpB 1290403 .. 1290425 +  -4.8  -2.71712   CTGAAGAGGTCATCG           CATGAACGAC ACC GTCATTCCTG           GTTTCAAGCCGAAGA  44 100
        prpC 1291572 .. 1291628 + -18.1  -4.05446   GAGCAGGCACTGCAG GTTGCGCTGTTGACCGGTTGCCTGC CTCTTGA GCAGATAGCCGGAAAACAGCGCAAC TTTGTACTTGCAAAC 100 39
        acnD 1294355 .. 1294401 +  -7.9  -3.62518   CCTGAAGATGCGCCA GTACGTCTCGC-GCAGCGGCTT GCCG ATGCCGCTGCCGGGAGGCACAC TTTGGCAATCTTTGC  62 36
 JH290_05935 NONE
 JH290_05940 NONE
        prpF 1296334 .. 1296392 +    -8  -3.23899   GCTAATCCGGGGCGG CGGCGGCTGTGTCGTCC-CGCTGCCGCC AGCGG GGCTGCAGCGCGGAAATCAC-GCCCCTG TTGCATTAATTAGAA  56 79
 JH290_05950 1298776 .. 1298797 + -14.4   -5.9873   GGTAAGCGATCCAGA           CCGCCGGC TATCAT GCCGGCGG            TTTTTTTTGTGGTGG 100 53
 JH290_05955 1300288 .. 1300303 + -10.4  -3.04461   TTGCGGGACCATGTA              GCGGCA TGGA TGCCGC               TATTGAGCCTGCATG  62 490
 JH290_05960 1305527 .. 1305574 + -18.4  -2.52464   TCACGGTAGGAGCGC GCTTGCGCGCGGTAAGGC-TTCC CTG GGAATGCCTCGCCGCGCGCCTGC TCGCTTCCAGGCCAA  86 45
 JH290_05970 NONE
 JH290_05975 1311250 .. 1311279 +  -5.6  -3.07816   TTTGCTGCGCTATCG       CGCGACGCTGGA GACGCG TTGAGCGCCGCG        TTACCTCGCTGCACG  49 4
 JH290_05980 NONE
        pbpC 1315074 .. 1315100 +  -4.3  -4.36914   GTTTCTTCCAGCGCC        GCACGCATCTGC AGAC GCAGCCGCG-GC         TTTTGTAGGAGCGCC  66 391
 JH290_06000 1317157 .. 1317188 +  -8.6  -5.02074   CGCCCGGCTGCGAAT      GACTGGCTCGTGGC CTCG GCTGCGGGCCGCTC       TTTTTTCAGAGGTGA  93 118
 JH290_06005 1318119 .. 1318144 + -16.9  -2.52676   GGGTGTTGTGATGCA         GCGCGTGCTGA TGTG TCAGCGCGCGC          TGCATTGCCCGGCTG  83 47
        pilH 1318807 .. 1318821 +  -2.7   -4.3255   CGGCGTGATCGCGCC               GGCAG TGCGC CAGCC               TTTCTTGCTTGGGCG  62 33
        hflK NONE
 JH290_06020 1321797 .. 1321821 + -17.9  -3.61239   TCTGCTTTGAACCGA          CAACGCCCGCG TCA TGCGGGCGTTG          TTGTATATGCCTCTG 100 45
 JH290_06025 1322382 .. 1322420 +  -4.4  -4.70659   GGATAATGCACAAAA  GCCGGCCGGGCACGCTC CAATCA GAGCAC-CCCGTTCGGC   TTTTTCCGTGTCAGG  75 238
 JH290_06030 1323873 .. 1323893 + -15.4  -4.55128   ATCGCACTGCCAAAG            CGGCCCGG CTTGT CCGGGCCG            TTTTCATTTGAGGAT 100 53
 JH290_06035 1326696 .. 1326741 + -10.6  -2.53911   GTTGAAATTGCGTCA CGGTGCATGGCATCTGTTTGCT ACCC AGCGGATAGGTGCCA-GC-CCG TGACTTCCGCATTGA  59 36
 JH290_06040 1328117 .. 1328133 +  -5.1  -3.42078   GGGTCATCACGCTGG              CAATGAG GCG CTCACTG              TTCTCGTCCGGTGTG  53 522
 JH290_06055 1330959 .. 1330990 +  -6.6  -2.89447   TTGCTGGGGATTGGT      GATGCGGCCTGATGA TCC TAATCTG-CCGCATC      TGCTTGTGATTGCGG  50 14
 JH290_06065 NONE
 JH290_06070 NONE
 JH290_06075 1333262 .. 1333274 +  -2.7   -3.1552   TAGCAGTGCGCCGGC                TGAAA CTT TTTCG                TCTTAATGAATCAGG  43 38
 JH290_06080 1335783 .. 1335797 +  -5.6  -3.12999   AGCACTACAGCCTGG               AGGCCA TTC TGGCCG               TTGGCTATCGCGTCC  51 299
 JH290_06095 1341083 .. 1341105 +  -3.4  -5.28176   CCGCTAACAGCGGTA           CCCACC TCCGACAAACC GGTGGG           TTTTTTGTGCCTGCA  85 126
 JH290_06100 NONE
 JH290_06105 1341991 .. 1342004 +  -5.9  -4.07568   GGTCGTCATTGTTTC               GTGGC AAGC GCCGC                TTTTGCCAAGGCGGA  65 169
 JH290_06115 1345047 .. 1345071 + -12.2  -3.03159   GTAGTTGCGCTCCAG         CAAGG-CGCGC ACCA GCGCGTCCTTG          TCTTCGAAGCGTTGC  67 524
 JH290_06125 NONE
 JH290_06130 1347293 .. 1347331 + -11.1  -2.71731   CCCTCATCCGGCCCT  TCGGGC-C-ACCTTCTCCC GAG GGGAGAAGGAAGTGTCCGA  TAGTTGAAGGATGCA  63 204
 JH290_06140 1349110 .. 1349133 +  -7.4  -3.63515   CGTGCGTGCCGCCGG          CGC-GCACATG CGG CCTGTGCAGCG          TTATTCCCCGTGCAC  62 59
 JH290_06155 1353092 .. 1353117 +  -8.1  -2.76964   GGCCGAGGTCGTCGT         TGCCGGCCAGG CCTT CGGGGCCGGCG          TGGTATTGGGTGTCC  54 379
 JH290_06170 NONE
 JH290_06175 NONE
 JH290_06180 1359595 .. 1359618 +    -3  -3.62597   GGCTTCTTCGATGCC          TTCGGCGATG ACGG CGATGCCGAG           TTCTTCGCACATGCG  53 408
 JH290_06190 1361057 .. 1361087 +  -2.4  -2.68802   CTGACGCGCGCTGCA       TGTGTGGCGCGCTA GGC TGGCGCACTGTCCA       GTTGTCGGTTTGGTG  39 81
 JH290_06195 1363990 .. 1364041 +  -7.3  -3.39505   CGTGACTGTGCGCTC GGCTTGCG-CAGCTGGGGACGTAAGC ACT GCTT-CG-CCTCAGCGGTCGGATGCC TTGTGCATCTCCGGT  58 325
 JH290_06200 1370417 .. 1370431 + -11.4  -3.62096   CAGCTGTGTCGCTCC               GCAGCG CAA CGCTGC               TTTCGCATCATCAGG  73 71
 JH290_06230 NONE
 JH290_06235 NONE
 JH290_06240 1379894 .. 1379927 +  -6.7  -3.61398   CATGCGGGCCGTCAG     CGTGTTGTTCAACTG CCTG CTGTTCAACGGCACG      TTGTTCAACAGCAAG  59 55
 JH290_06245 1380884 .. 1380901 +  -9.9  -3.68569   CTGCTGCGACGGTTG             GGTGTAC AAAT GTACACC              TTGTTCCGTGGCTGG  74 263
        lexA NONE
        imuA 1382180 .. 1382207 +  -4.8  -3.65812   TTGCGGTTGGCGCAT        TGAGGGCCGCGCA TGT TGTG-GGCCTGCA        TTCTGTTGCCACAGC  55 23
 JH290_06260 NONE
 JH290_06265 1387135 .. 1387147 +  -3.3   -4.4078   TCGGCGAGATGCAGC                TGCCG TCG CGGGA                TTTTCATTGAAGGCA  67 3
 JH290_06275 1390584 .. 1390597 +  -2.3  -4.65895   CGCCTCTTCCAATGT               GCGGT TGCG GTCGC                TTTTTGCCTGGCGAG  68 393
 JH290_06280 1391844 .. 1391855 +  -5.8  -3.18264   CAAGCGTGCCTGGCC                GCTG CCAT CAGC                 TTGATGGCTGCACGA  51 267
 JH290_06285 1394203 .. 1394242 + -20.2  -3.97368   GATCGCCCGTTGAAG  CACTGACAGGCACGCCGTG CAA TGCGGCGTGCCTGTCA-TG  TTTGTGGCTTAGAGC 100 39
 JH290_06290 1394679 .. 1394724 +  -6.2  -4.14739   GGCGTGCAGGATCTG CCCGC-CCTGCGGATGCTCATCG ATC CGGTT-G-ATCAGCAGGAGCGGG TTTTCGCCTGCATGC  66 315
 JH290_06300 1395635 .. 1395651 +  -2.1  -3.35813   GATTGCGAACTGCAG              TGCCCGC AGC GCCGTCA              TTCCTTGCCCTGAGC  45 98
 JH290_06305 1396561 .. 1396585 +  -4.9  -3.34013   GGCCGGTGCTCGGAA          TCGGCATGTAC CCC GTACACTCCGG          TTCCTTCGCGCCATC  50 182
 JH290_06310 NONE
 JH290_06315 1397141 .. 1397154 +  -4.5  -3.65351   CATGGAAAGTCGCTC               GC-GCC CAA GGCAGC               TTTCGGTGGCGCTGG  53 214
 JH290_06335 1401209 .. 1401221 +  -5.5  -2.52464   TGGGAAATCGAGCGT                CATCG AAT CGGTG                TAGCTTCGGGCGGAG  45 128
 JH290_06345 NONE
 JH290_06350 1407270 .. 1407286 +  -9.3  -3.33151   TGACCTGCGGTACAA              GCGCGCG TTG CGGGCGC              TCTTGGTTTCGGGCG  63 38
 JH290_06380 NONE
 JH290_06385 1418602 .. 1418625 + -10.3  -2.58861   CCCCGGCAACAGGCC          GCGCGCAAGC AGCCA GCT-GCGCGC          ATTCTCCGCATCCTG  59 77
 JH290_06415 NONE
 JH290_06420 NONE
 JH290_06425 NONE
 JH290_06430 NONE
 JH290_06435 1424077 .. 1424132 +  -3.6  -3.81146   TGGTCTGATGGTCAG GCGCCTTGGGCGAGCGGTGCGTCGGC GTAT GCCCTCACCGCGTTTGGCCGATGCGC TTGTTCATTGCGACG  54 33
 JH290_06440 1425652 .. 1425673 + -17.3   -6.3578   TGATCCAGACGAAAA           CGCGCCGCA TCCT TGCGGCGCG            TTTTTTTTTTGCGCT 100 60
 JH290_06445 NONE
 JH290_06450 1426831 .. 1426861 + -12.5  -3.14132   CGTTATCAGGGGAGT      C-CCGGGCGCCGGC AATG GACGGTGCCCGGCG       TTGCTCAGCCAGGCA  73 94
        purT 1432753 .. 1432783 + -13.3  -4.09864   AGTTCTTGCGGGGCC       TTGTGGGCATCGG CCTGA CCGTTGCCCACGA       TTTTCAAGACTGCCT  86 48
 JH290_06510 1437894 .. 1437919 + -16.9  -5.75342   GCGCCGATCGACCGA         CGGCCTCCTGC AACT GCAGGAGGTCG          TTTTTTTTCGCGCGC 100 152
        rplU NONE
        rpmA 1446451 .. 1446466 + -11.8  -4.98531   GGGCGAGACGGAGAG              CCCCGC TTCG GCGGGG               TTTTTCGTTTGACGG 100 86
        obgE 1447718 .. 1447733 +    -6  -4.78237   GGCGCCCACAAAAAA              ACCGGC CAAG GCCGGG               TTTTCTTGTGCCATC  80 50
        murJ 1449838 .. 1449869 +  -8.7  -2.52464   CGCGGCCGGGGCGAC     CCGGCACACGCGGCG CGTG CGCCG-GC-TGCCGG      TCGATTGGCAAGCCG  53 100
 JH290_06570 NONE
        ileS 1453986 .. 1454015 + -13.5  -3.40403   GCTTGCACGGGGTTG       CGGCGCCGGCCAGC TGT GC-GGTCGGCGCGG       TTCTGGTGGGCAGCC  79 84
        lspA 1454729 .. 1454782 +  -9.4  -3.02511   TGCGACGCTGCCTTG ATGGGCAC-GCCGCAG-CAACGCGCC TGGT GCCGCGTTGTCGGCGGCCGCGCCCCC TGTTGAAAACGTCCG  60 58
        ispH NONE
 JH290_06590 1456054 .. 1456079 + -16.9  -3.27704   ACCATCGCATCATCA         CTGGGTCGACC CTTT GGTCGGCCCAG          TTGCGTTTGGGCGCT  91 37
        cyoA NONE
        cyoB 1459312 .. 1459333 +  -6.5  -2.66316   ACAGCAACATGCGGC           TCAGGCCGC GAAG GCGATCTGA            TCATGTCCTCCACGA  48 4
        cyoC NONE
        cyoD 1460328 .. 1460347 + -16.4  -6.06723   GCCGGATCACTGAAA            GCCGCCGG AGCT CCGGCGGC             TTTTTTTTTGCCCGG 100 53
 JH290_06615 1462535 .. 1462585 +  -5.3  -3.49475   AGGGCCTTTGTTCGC GCGAGGCATGCCGCCG-CATCTCGC TAC GCGGAGTGACGGCGCCATCCCG-GC TTATGTCCGGGTGCC  53 223
        radA 1464415 .. 1464442 + -13.4  -3.30124   CCGGGCTCGCCGCTG        CG-GGCGGCGCAG GCG CTGCGCCTCCACG        TTCTGCAAGCTGCAG  77 96
 JH290_06625 1465078 .. 1465108 + -15.5   -3.0386   CTAAACTGCAAAAAA      CAGCGGCGCCAAGG GAAA CCT-GGCGCCGTTG       TCGTTTATGGGTGTT  81 47
 JH290_06635 1468657 .. 1468673 +  -7.9  -3.85698   CAGGGCTGTGCCGGA              CGTTGGC TCA GCCGGCG              TTTATGCGCAGCGCG  68 111
 JH290_06640 NONE
 JH290_06645 1473202 .. 1473232 +   -11   -5.4505   AGACCACCAGTGGTT       ACGGCGCGCTGCGG TTC TCGTGGCGCGCTGC       TTTTTTATTGAGGAA 100 40
 JH290_06655 NONE
 JH290_06660 NONE
 JH290_06665 NONE
 JH290_06670 NONE
 JH290_06675 NONE
 JH290_06680 1480862 .. 1480892 +  -3.1  -3.68351   CTGTAGGCGTACGGG       CCGAAGGTGGC GCCAAGAAA GCCGCCGGCGG       TTTCGGTGCTGAGCA  54 131
 JH290_06695 1485180 .. 1485204 + -18.6  -2.52543   TTGGCGCTGTAAGCA          GTGCGGCGGC CATGA GCCGCCGCAC          TGCGTTCAAACGGCT  87 50
 JH290_06730 NONE
 JH290_06735 1494013 .. 1494027 +  -9.2  -3.21099   CTGTTGAAGGGCGAG               GGCGGC TGA GTCGCC               TTACTGCTCAGAGCA  61 17
 JH290_06740 1494638 .. 1494687 +  -9.9  -2.80816   GCTGAGGTTGTTCCA CAGATACAGCTGCGCGTCCTGGCC GAA GGTGAGC-CGCGCAGCGGTGTCGG TCTGATCGGTGAACA  59 490
 JH290_06755 1497545 .. 1497577 +  -7.5  -3.05963   CGCCGCGCACGCTGA      CCCCGTCCACCGCCA CGC TGACCGTGGCCGGGC      TGTTGGCATCCAGAT  53 343
 JH290_06765 1500434 .. 1500450 + -10.1  -3.22298   GCAGCGAGCGTACAC              GGCCGGT AAC ACCGGTC              TTAGTGATCGCTAAC  64 178
         ffh 1502998 .. 1503022 +  -4.1  -3.54424   GGCGCCATGGGCGGC          CGCGGCGGCAT GCC GTTCCGCTGAG          TTTCAGGCGCTGACG  53 2
 JH290_06785 NONE
 JH290_06790 1506519 .. 1506540 +  -7.9  -2.52623   AGTGGTGGGCCCAGG           CACAGGCGC GCGT GTGCCGGTG            ATCTTCTGCAACGGC  50 3
 JH290_06795 1507343 .. 1507353 +  -4.6  -2.57013   GAGCGATGACAGGCG                 CTGG CGG CCGG                 TGGGTTGGCTTCGCC  43 39
        rpsP 1507680 .. 1507698 + -10.2  -3.01712   CGAAGCCTCCAAGTC             CCAGGCCG CTG CGGCCTGA             TCTTGAGGGCCGGGC  62 7
        rimM 1508260 .. 1508277 +  -8.3   -3.1978   GGATTTCTGATCGAA             GCGGTGC TTCG GCTCCGC              TCTTGCTCTCCCCAT  58 31
        trmD 1509117 .. 1509132 +  -4.6  -3.12668   AGGGGTATAATATGC              GGCTTG CTGG CCAGCC               TTGCGTCTGGCCCTG  48 71
        rplS 1509653 .. 1509683 + -16.3   -4.1721   CTTGTCCCGCCACTG      C-CAAACAGCCGCC TTCG GGCGGCTGTTTGCG       TTTTGGCGTCTGGCT 100 55
 JH290_06825 1512906 .. 1512937 +   -26  -3.16683   GCGCAATGCCACAGA      CGCAAACGCCCCGG CGAA CCGGGGCGTTTGCG       TTACTGCAGTGGCGT 100 212
 JH290_06845 NONE
 JH290_06850 1522182 .. 1522192 +  -8.2  -2.91264   TGGCGCACACGCCGC                 GCGC TCG GCGC                 TGTATCCATGAGCGC  55 150
 JH290_06855 1523638 .. 1523651 +  -3.8  -2.66316   GCAGCGTTGATTTTG               CGCA TCCACT TGCG                TGATGTCCTGGCCCG  41 9
 JH290_06860 NONE
 JH290_06865 NONE
 JH290_06870 1527245 .. 1527262 +  -6.3  -3.23869   ATCCATCGCTGCAGC             GCAC-ACC CTG GGTCGTGC             TCTTCTGCAGTGATG  53 421
 JH290_06880 1528763 .. 1528784 +  -3.7  -4.08945   CAGTGCGTGTGTCTG           GGC-GCTG CATGGAC CAGCCGCC           TTTTGGCCACGTCCT  61 346
 JH290_06885 1532494 .. 1532533 + -26.6  -3.29511   GCGCACCAGAGACAG  GTTCGCCAACCGCAGCGT CGCG ACGCTGCGGTTGGCGATC   TTCTCCGGGCCTCAG 100 301
 JH290_06895 NONE
 JH290_06900 1536508 .. 1536526 +    -8  -3.04144   AACAACAGACGCAGC             CGCGCCGG CGT CTGTCGCG             TGTTGGCGGTCCCGG  54 84
 JH290_06965 NONE
 JH290_06970 NONE
        sctJ NONE
 JH290_06980 NONE
        sctL NONE
        sctN NONE
 JH290_06995 NONE
        sctT 1552517 .. 1552527 +  -4.6  -3.69934   GACGCGTGCACGCCA                 GGCG CGC TGCC                 TTTCCGATGTTCTTT  58 153
        sctC 1554509 .. 1554543 + -14.2  -3.36327   CATTGAAGCCGCCAC     CCAAGCTGGTGCCGCC CAT GCCGGCGCCGCCTTGG     TTCTGCATCAGCTGC  77 151
 JH290_07015 1555816 .. 1555840 + -11.3  -3.56821   GTGTAGTGCAGTACA          TCGCCGCGCCC ACC GGGGGCGGTGG          TTTGAGCGCTGTGCT  73 64
 JH290_07050 1562476 .. 1562505 +    -5  -3.53224   TCCGGACGCCGCCTG       CGATGCCGTG-CG CGCGC CGATAAGGCATCG       TTTGGCCGGGCAATC  53 80
 JH290_07055 1564599 .. 1564623 +  -8.6  -3.28712   ATCGCGGGTATCGGC         GCGTTC-TCGC GCTT GCGATGAGCGC          TTGTGCGCCCGCGCG  60 5
 JH290_07060 1565241 .. 1565257 +  -4.3  -3.65522   ATAATCTTAATTAAG              CACTCGC CGT GCAGGTG              TTATTACGCTCGCTA  53 139
 JH290_07065 1566504 .. 1566558 +  -8.5  -4.03234   GTGTTATTGGTCACG GCCTCTCCTGACATTCGTGCCTACTC AACA GAGCAGGCACGAATG-CGGTCGTGAC TTTGTGTAAACGAGC  73 212
 JH290_07085 1570068 .. 1570080 +  -3.3  -3.43071   ATCAGTTAACCATTG                CGACT AAA AGGCG                TTCGTTGATCTCAAA  49 348
 JH290_07110 NONE
 JH290_07115 NONE
 JH290_07120 NONE
 JH290_07125 NONE
        mmsB 1585208 .. 1585218 +  -8.2  -3.32698   GATGCCGCAAGCGCC                 GCCC TGT GGGC                 TCTTATGTGGCATCC  60 198
 JH290_07135 1586687 .. 1586704 + -11.3   -4.2803   GGCGGTTAAAAAAAA             CGCCACT GCGT AGTGGCG              TTTTGGGTTGAGATC  89 160
        rpoE NONE
 JH290_07150 NONE
 JH290_07155 1592239 .. 1592253 +  -7.1  -2.92293   GGGAATCGGAAACAG               CGGCA GGTCA TGCCG               TCTGCTCTTACGATT  50 68
        lepA 1594186 .. 1594230 +  -8.1  -2.53911   GGAATGGTCAATCGG GAATCGGGAATGGTCAGG-GCG TGCG CGCTCCTG-CTGTTCC-GATTC TCGATTCCCGATTCC  53 44
        lepB NONE
 JH290_07170 NONE
         rnc NONE
         era 1597144 .. 1597159 +  -3.9    -3.494   ACGGTTAACAGGTGC              GCGCC CATGCC GGTGC               TTGTGTGAGAGGTTC  51 127
        recO 1598060 .. 1598095 +  -3.8  -2.89298   AGATGCCGGCCAGTG    GGTCAGTGCAGCAGCG CGGC CACTGCGGCATGGAAC     TGGTTCTGTGCAATG  44 78
        rlmD 1600339 .. 1600371 +  -9.2  -2.90496   GCAATGGCAGCTGAT     G-CAGCACACATCCC GGTC GGGATGTGTGTGGGC      TGCTTTCAACCGCGC  58 88
 JH290_07205 1601676 .. 1601700 +  -7.8  -3.06696   GTCGGTACGCTGAGT         TCCACCG-GCC GCAA GGCGCGGGGGA          TCTGTTCGCGCGGCG  54 28
 JH290_07210 NONE
 JH290_07215 NONE
 JH290_07220 NONE
        nagZ NONE
 JH290_07230 1607236 .. 1607259 +  -8.1  -4.15114   CCCCGGTGGGTACAG          CGCTGCGTC ATTGCC GGTGCAGCG           TTCTTCTTTCGTCTT  76 58
 JH290_07235 NONE
 JH290_07240 1608377 .. 1608392 + -11.8  -5.75342   TGTGCGATTGAAGAA              CCCCGC TTCG GCGGGG               TTTTTTTTGCGCCGG 100 51
 JH290_07245 1609779 .. 1609813 +   -12  -3.28712   GTGAAGTTGGTGCGC     CGCACGCGCACCGTTG CAT CAACGCGGTGCGCGCG     TTGTCACCGCACCGG  72 85
 JH290_07305 1624410 .. 1624466 +    -8  -3.54475   TACAGCGCCGATTTC TGATCG--GTGTGCCTGACGCCCGGGTG CAA TGCCCGGGCGTCAGGTGTGCGGTGGACA TTGTGTCATCGCCCG  62 23
 JH290_07320 1627002 .. 1627030 + -21.9  -3.94811   GGCGCAAGAACTATG        CAAAAGGAGCGGC ATT GCCGCTCCTTTTG        TTTGTGCGTGCTGTT 100 80
 JH290_07330 1627857 .. 1627886 +  -7.1  -4.19678   ACAGGCTGTTGGGCA       CCTGC-AGCACGCT GCC AGCGTGGTCGCCGG       TTTCTTCCAGTGTGG  72 110
 JH290_07340 1628696 .. 1628709 +  -2.3  -3.53387   GCAACCGCTGTCATG               CGGCA GGAG TGCCC                TTCGTTATGTGTGTC  47 136
 JH290_07350 NONE
 JH290_07355 NONE
 JH290_07360 1631479 .. 1631489 +  -8.2  -3.01712   GGTGAGCACTTCGAT                 CCGG CCG CCGG                 TCTTGCGAAACGCGG  55 187
 JH290_07385 1635565 .. 1635576 +  -7.2  -3.14132   CCCGCCGCGGCTGGT                GGCG AACT CGCC                 TTGCTGGCCGGAGCC  56 236
 JH290_07395 1636755 .. 1636769 +  -8.5  -3.30159   CGGTTGGTCAGACGG               CGCGC CGCTT GCGCG               TTATCGGGGCATTCG  60 65
 JH290_07410 1640977 .. 1640987 +  -3.2  -4.28994   AGCGCGCGCTGGCCG                 CTGC GCA GTAG                 TTTTGATAGCTGCTC  64 15
 JH290_07415 1641334 .. 1641350 +    -3  -3.14132   AGTCCAGGCCGCTTG              CATTGA ATGAA TCGATG              TTCATGGCAGGCACG  44 54
 JH290_07420 1642061 .. 1642088 + -16.4  -4.99035   TAAACGATAGAGGCG        GAAACGGGTAGC GCGA GCTGCCCGTTTC         TTTTTGTGTGGGTGC 100 86
        thpR 1642988 .. 1643003 +    -6  -2.62184   CTATCAGATCGAAGG              GCGCTG GTCA CTGCGC               TGATGTGCACGCCGG  46 7
 JH290_07430 1643682 .. 1643694 +  -4.7  -2.53382   ATTGCGCAGCCCCCG                GGCGG GCG CGGCC                TGCGTTCGAAATCCT  43 63
 JH290_07435 1644016 .. 1644039 +  -2.3  -2.88571   GTGAGCGAAGCAACG          CGCTTCGCG GCAGCA CGTGGAACG           ATTATCTTTGGCCCA  40 37
 JH290_07440 1645461 .. 1645502 + -22.3  -3.33492   AACCGGGTAGGGCGG CGCATCCGCGCACCGCGTG ATCG CACGCGGTGCGCGGGTCAG  TTATCGCGTCAGTCC 100 39
 JH290_07450 NONE
 JH290_07455 1649669 .. 1649685 +  -4.3  -3.76141   CCGGTCCTGATTTTC              CAGCCAG GCA TTGGCGG              TCTTTTCGTAATGCT  58 300
        mmuP NONE
        mmuM 1667119 .. 1667136 + -11.3  -3.92075   GCGGCGCGTACGGCT             GGCTGAG CGTG CTCAGCC              TTTCTGCGTGGCGAT  79 20
 JH290_07565 1671984 .. 1671997 +  -5.9  -3.36289   AGTTGCAGGACACTG               CCGCG GCGA TGCGG                TTGATTGGCGTGGTG  52 8
 JH290_07570 1672468 .. 1672479 +  -7.2  -4.62069   CACGAAAGTGGAGTC                GCCG TAGC CGGC                 TTTTTCCAGTGCCGG  79 268
 JH290_07580 NONE
 JH290_07585 1675772 .. 1675785 +  -4.5  -3.90048   CACCGTGATGATTGC               CGTCG CTGT TGACG                TGTTTTTACGGCAAG  58 120
 JH290_07600 1678909 .. 1678952 + -12.4  -2.76815   TGCCTTGGCCTGGTC CGTACGTGCGGTGCGCTGCAG CAG CTGT-GCATACCGCACGCGCG CTTCTTCGCCCGGGT  65 284
 JH290_07645 1689246 .. 1689277 + -24.6   -4.2828   ACCTGGTGTAACAAA      CAATGGCGGCCCGA GTAG TCGGGCCGCCATTG       TTTTGCTGCGTACGA 100 76
         map NONE
 JH290_07735 NONE
        dapD NONE
 JH290_07745 NONE
 JH290_07750 1713066 .. 1713083 +  -6.3  -2.52464   ATGCTGCACCCCTCA             C-GCATGC GCT GCATGCAG             TCCCTTGCCAAGAGA  48 97
        dapE 1714224 .. 1714260 +  -8.7  -3.60098   CGCTCGTCGAGCGTC    TGCTGGTCTGAAGTGTT GCA GGCGCTTCAGGCCGACA    TTTGACGTGCGCGGT  65 15
        asnB 1717541 .. 1717564 + -14.6  -3.21099   ACCCGCTTGGTTGCT          GCGCAGCGGT TTTG ATCGCTGCGC           TTACTCGTGGCGCAC  80 205
         bfr 1724718 .. 1724740 + -14.8  -3.74693   AGTTCTGTAAAACCA           CCGCGCGGCG CAA TGCCGCGTGG           TTTGATCGACTAGCG  88 203
 JH290_07805 NONE
 JH290_07810 NONE
 JH290_07815 NONE
 JH290_07820 1734039 .. 1734053 +  -7.1  -3.28791   TGCGGCGGCTGGTGG               TGGGC ATTGA GCCCA               TTGTGAAAGAGAGCT  55 16
 JH290_07825 NONE
 JH290_07830 NONE
 JH290_07835 1737471 .. 1737502 +  -3.8  -3.25538   ATGCAAGAAAAAGGA      TTGCGGAGAATGGTT GAG AAAC-TTTTCCGCGA      TGATTTTATTCGCCG  48 9
 JH290_07840 NONE
 JH290_07845 1740571 .. 1740584 +  -3.7  -3.57561   GCTTTGGCGGGTGAG               CGGCG ATTG CACCG                TTTGCGCCCTTGCCG  51 487
 JH290_07860 NONE
 JH290_07865 1743617 .. 1743632 +  -8.2  -5.75599   CTAGCCACAAAAAAA              CCCCGT TTCA GCGGGG               TTTTTTTGTGCTTTG 100 76
 JH290_07885 NONE
 JH290_07890 1750793 .. 1750816 + -18.2  -2.78712   TGCCTGCGCGGCGTT          CGCTGCGGCA CGGT TGCCGCAGCG           TGATTGCGTTGGGCA  86 155
 JH290_07900 NONE
 JH290_07905 1752470 .. 1752490 +  -6.9  -2.66316   GCGCCGACGATGTGT            TTGAATGGT TTA GCCATTCAG            TAATGTAATCAACGG  48 50
 JH290_07910 1753035 .. 1753065 + -21.3  -4.57073   GCGGGCTTCAAACGA       CAATGCCGCCTGG CAGTA CCAGGCGGCATTG       TTTTTAGAGCGGCTA 100 50
 JH290_07925 1756115 .. 1756170 + -19.7  -2.62184   TGCCAAACCGTAGGA GCGCCCTGGGGCGCGATGAAGCGTT ACTGGG AATGCTCCGTCGCGCCCGGGTGCGC TCCTGTGACGACGCG  90 54
 JH290_07940 1760870 .. 1760896 + -15.2  -4.35524   TAAGCAAACTTGGAA         CGGCGACGCA CACCCAC TGCGTCGCCG         TTTTCAGTTTGGGCA 100 38
 JH290_07945 NONE
 JH290_07950 1762307 .. 1762322 +    -6  -2.76453   ATGTTGCGCACCGGT              GGCTGC TGCC GCTGCC               TCGTTGCCGTTCTCG  46 192
 JH290_07955 1763036 .. 1763053 + -12.7  -5.52384   ATCTGAATTGAAAAG             GCCGGCA GCGA TGCCGGC              TTTTTTTCATGGCAA 100 97
 JH290_07970 1765413 .. 1765428 + -11.8  -3.96148   CGCAGACGGCAGAAA              GGCCCG TTGC CGGGCC               TTTCTGCTCAGGACG  81 53
 JH290_07985 1767479 .. 1767533 + -10.7   -3.4052   CCGCGATCGCTTCGG CCGGCTCGCC-GCGCAGCTGCGC AATGCAGTCCA GCACGG-TGCGCAGGCGCGCCGG TTCGTTGCGTTGCCC  68 133
 JH290_08000 1769356 .. 1769386 + -19.8  -4.36914   TTGGGTGCGCAGTAG       AGAGAAGAGCCGGC ATT GCCGGCTCTTCTCG       TTTTGTGCGAACGCC 100 61
 JH290_08005 1770700 .. 1770712 +  -6.2  -2.78935   AAGGATGTGATGCAG                CGCC TGCGT GGCG                TGTGGTGGGGAGTGT  46 64
 JH290_08010 1773428 .. 1773457 + -17.1  -3.53012   ATGACCGGCAGATGT       GCCCTGCCGCGTG CACG CCTGCGGCAGGGC        TTTGCAAAGCCGCGA  93 153
 JH290_08015 NONE
        asnB 1776146 .. 1776171 + -12.5  -2.70932   CTTCACCGGGTGTGC         GCGCCACGCTG CCTA CAGTGGGGCGC          TGGTTCCCACGGAGC  68 52
 JH290_08025 1776867 .. 1776897 + -16.2  -3.14683   TATCCACAGAGTTGT       GCATGGTCCTCGCC GCC GGCGATGACTATGC       TTCCTGCCCCCGTCT  86 144
 JH290_08030 1778598 .. 1778618 +  -3.9  -3.40403   CGCGGCTGGCATCGC            GCCATCG TTGCGGC CGCTGGC            TTATGCTGCGCGGCC  51 257
 JH290_08035 1780140 .. 1780155 +  -5.4  -3.96148   GATTTCATCATGTGC              CAGTCGC GTT GCG-CTG              TTTATCCTCGCGGCA  60 90
 JH290_08040 1780986 .. 1781001 + -11.8  -5.86332   CGGATGCATAAAAAA              GGCCGC GAAA GCGGCC               TTTTTTTTGAGTTAC 100 77
 JH290_08050 NONE
 JH290_08055 1785105 .. 1785125 + -10.4  -3.90922   GGGGCGCTGTGTGCC           G-CGCCGCC ACCC GGCGGCGAC            TTCTTTCAGGACCAT  76 100
 JH290_08060 NONE
 JH290_08065 NONE
 JH290_08070 1790496 .. 1790526 + -16.1  -2.54523   GAGCGCTGAGATGGC      AGGGCGGG-CGGCC GCGC GGCCGTCCCGCCCA       TGCATTACGGTATCA  80 32
 JH290_08080 1792129 .. 1792151 +  -7.6  -3.07816   ACAGCGCTTCATCGG           CCTTGCGCAG CAA CTGCGCGGCG           TTGCCTGCATGCCCG  53 119
 JH290_08090 1794155 .. 1794188 +    -3  -3.83026   ACTGGCATCGCTTCT     CGCCGACGCCGCCTG AATTC CAAG-GCCTTCGGCG     TTTGATCTCGGGCCG  56 43
 JH290_08095 1794848 .. 1794878 + -11.9  -3.20207   ACCGCACATGAAAAA      GGCCAGTCG-TCTC TCTC GAGAACGCCTGGCC       TTAGTCGGTCGTCTT  70 264
 JH290_08105 1798091 .. 1798102 +  -7.2  -3.66356   CCATCATCAAGCTCA                GGCG ATGC CGCC                 TTTACGATTCCCGAT  62 221
 JH290_08115 1799114 .. 1799133 +  -9.2  -2.82635   CAACGATTTCGTGCG            GGTCGCCG ATCG CGGCGACG             TCTAGTCATGCGGGT  57 1
 JH290_08120 1799662 .. 1799674 +  -6.9  -4.02817   GCGCTAGCGTCCTCA                GCGGC CGC GCTGC                TTCTTCTTGTCGCGG  67 250
         fur 1800592 .. 1800620 +   -14  -2.87132   TGCCCCAGGTAACAC       TG-ACAAGGCGGC TTCG GCCGCCTTGTGCA        TGTCTGGGAGAAGCG  74 49
        hrcA NONE
        grpE NONE
        dnaK 1806762 .. 1806793 + -18.8  -2.53747   TAGGGAATAGAGAAT      CGGAGGAGCGGTGC TACG GCATCGCTCCTTCG       CTGTTCTGACCCTTC  87 49
        dnaJ 1808046 .. 1808071 + -19.1  -5.26316   TGTGATCCAGCAACG         TCCGGCGTGCA GCGA TGCACGCCGGA          TTTTTTATGGAATCG 100 64
        pdxY NONE
 JH290_08165 1810454 .. 1810475 +  -5.8  -3.12595   CGGGAGCAACCCAGT           GGCAAGTG GAAACG CACTCGCC            TGTTGAGTAATTCGA  51 210
 JH290_08255 1834149 .. 1834168 +   -10  -3.28791   GGGCGGCGGTGGTGG            CGGCTGAC CTTG GTCAGCTG             TTGTAGGAGCGCACT  66 19
 JH290_08295 1839581 .. 1839601 +  -7.6  -3.78026   TGCGACAATGCGCAT           TCAGCGCCG GCGT CGGCG-TGA            TCTTTTCACTTTCGG  65 69
 JH290_08300 NONE
 JH290_08305 NONE
 JH290_08310 NONE
 JH290_08315 1842929 .. 1842945 +  -7.2  -5.27938   GAAGGCAGCAAATCA              GGCGCC TGAGC GGTGCC              TTTTTGTTTGCCCGT 100 67
 JH290_08320 1844119 .. 1844133 +  -5.6  -2.54896   CCGTTCCCACAGAAA               TGCTGC ACT GCCGCA               TGCATTGAATGCAGG  46 167
 JH290_08325 NONE
        fucP NONE
 JH290_08335 NONE
 JH290_08340 1848857 .. 1848868 +  -5.8  -3.68619   CGACACGGTCGGCGA                GGTG TGCC CACC                 TTTCAATGACTTCAA  60 43
 JH290_08360 1855897 .. 1855908 +  -4.4  -3.66178   TACAACGTCTGGGCT                TGCA AGCC TGCA                 TTTAGGCTTGAGCCG  53 425
 JH290_08365 1858103 .. 1858122 +  -3.5  -3.72576   GCTGTTGCGTCGCAG            CTGG-CGC ACGGC GCGTCCGG            TTTCGTCGACGCCAA  54 132
         rnr 1861352 .. 1861376 + -13.5  -3.64703   AGTGCGGAGTGAGTG          CCACCGCGCCG TGA TGACGCGGTGG          TTTGCCTAACACGCC  81 95
 JH290_08380 1861975 .. 1861986 +  -3.6  -3.29043   ACGTCGGTGCGACTA                GCGT TCAA GCGC                 TTGTCCACAGCGGTT  46 118
        rlmB 1862961 .. 1863000 +  -8.4  -3.85698   GAGTCATGCGGTGCA  C-CGGCGCCGCACTGCGCG GGC CGGGCACTGCGGCAGCGAG  TTTATAAGCGCGCAG  71 39
 JH290_08390 1866259 .. 1866272 +  -5.9  -3.84246   GGGATTCGCAAGAGC               GCGCT GTTT GGCGC                TTTGCTGGTTACAAC  62 58
 JH290_08440 1875765 .. 1875782 +  -8.3  -3.82605   CCAGCTGTCGCTGTA             CCCGGCG TTTC CGCCGGA              TTCTCTTGATTTGTT  71 43
 JH290_08445 NONE
 JH290_08450 1878151 .. 1878200 + -14.5  -5.75342   GCCGGGTGTGTCCTG TCGTGACCGGATGATGCAT GGCGCCGATAAG ACGCATCATCCGGTCGCGA TTTTTTTTGGGCCGG 100 65
 JH290_08470 1881037 .. 1881068 + -22.4  -3.63627   CGTTCGCTGTTGCTG      TGACAACGCCGGCC ACCA GGCCGGCGTTGTCG       TTTCAGGTATCGGAA 100 44
 JH290_08475 NONE
 JH290_08480 1882826 .. 1882840 + -11.4  -3.33315   GGGGACGCAGGCTCG               CTGCGC GGA GCGCAG               TTCTCGCAGTGTTGG  69 61
 JH290_08485 1883830 .. 1883855 +  -5.3  -3.65902   GCGCGGCGCTCAGCG         CGGCGCGTGCAC CCA GCGCACG-GCAG         TTTCGATGCGCTCCC  55 41
 JH290_08495 NONE
 JH290_08500 1885459 .. 1885487 +  -6.7  -2.82516   GACGACCACGACATG       C-CTTCGGCGCA GACCGA TGCGCCGATGAG        TGTGCTGATCCGCGA  49 46
 JH290_08505 1886013 .. 1886058 + -11.1  -3.05463   CTGTGCTGTGGTCGC TGCGCACGGGTAATGGCGCAGC CGC GCTGCGCTCGCAT-CGTGCGCA TTCGCTCGCCGGCAT  66 49
 JH290_08510 1887140 .. 1887175 +    -6  -3.74345   ACTCCCGAGTGCAGG    CCCTGGTTGCAGGTGC TTGA GCGTGTGCAACGTGGG     TTTCGGTGTGTGCCT  60 47
 JH290_08515 1889114 .. 1889155 + -12.9  -2.71712   ACCGCGCACGGGCAG GGCAGGCCGTCG-GGCTGGT AAT GCCGGCCCCGATGGCCGACC ATTTGCCCCCGCCCG  68 41
       rlmKL 1891577 .. 1891587 +  -2.4  -2.86343   CGCACAAGCCCACCA                 CGGC GCT GCGG                 TATGCTGATTCGCAT  40 198
 JH290_08525 1892493 .. 1892516 +  -5.2  -3.55444   GGATGCAGCGCTGAC          GCTGCAGC AGAACCGC GCTGCCGC           TTTGACCAATCCCCA  55 123
 JH290_08530 NONE
 JH290_08535 1894314 .. 1894339 +  -6.8   -3.1355   CCGCCGGCAGGGGAG         CTGCCTGCAGC ATCGC GCAGC-GGCAG         TTGGATGTCGGTGAG  53 81
 JH290_08605 1907391 .. 1907420 +  -6.3  -3.14132   AACTGCCATACTTTC       CGGCTTCCTGTCC GTTT GGGCGGGAAACCC        TTGCTCCACCGGCCG  53 269
        rpsF NONE
        rpsR 1908325 .. 1908344 + -13.6  -3.74526   GTCCCTCACGAAAAG            CCCGCACA TCCA TGTGCGGG             TTATTAAATTGATAG  84 176
        rplI 1908983 .. 1909000 + -14.1  -5.60993   TGTCTGCATCAAGAA             GGGCGCC TCAC GGCGCCC              TTTTTTTATGGGCGG 100 51
 JH290_08625 1910295 .. 1910337 + -10.4  -2.79183   TGAACCGCGCCGGCC GCCATGGCCTGCGCGGCGG CCATGC CCGCCGTGCCTGCCC-GGC TATACTCGCCATCAA  60 38
         smc 1913954 .. 1913974 +  -5.3  -3.17688   CCGCACGTTTGGCGG            GCGCGGCAT GAC GTGCCATGC            TTGCTGGAATGATTA  48 15
        zipA 1914895 .. 1914911 + -10.9  -2.53263   CCCCTGCGTGGCACC              TTCTCCC GAG GGGAGAA              TGGATTGCCACTCAG  62 165
        ligA NONE
        genX 1919800 .. 1919811 +  -3.6  -3.60475   ACGTCCACGGGGGCG                CGGC GTTG GTCG                 TTTCGGGTGAGGATT  51 104
 JH290_08655 NONE
        mtnA 1921790 .. 1921803 +  -3.7  -3.57144   GCCTGTCTCTGAGGC               GCCCC CGAC GCGGC                TTTCCGGCTCGCCCG  53 184
        gyrA 1924573 .. 1924591 + -13.8  -5.79526   CACAGTCATGAAAAA             CGCCGGCG CAT TGCCGGCG             TTTTTTTTGCGGTGT 100 58
 JH290_08670 1927236 .. 1927261 + -19.1  -3.53811   TGGATCTGTGAATCA         GAAACGCGCCG CTTG CGGCGCGTTTC          TTTAGCGCGCATCCC 100 58
 JH290_08700 1935116 .. 1935133 +  -5.5  -2.78384   AAGCGGGCACAATGC             AGGTCTC ACCG GAGACCC              TGTCGTGACCACCGC  46 56
        hutC 1936335 .. 1936352 +  -9.8  -3.12999   CGAGGTCCGGCTCGT             CGCCGG CGGCGA CCGGCG              TTGCCTGTGGCGTCG  62 485
 JH290_08725 1939434 .. 1939452 +  -6.6  -3.60948   GCCAGGCGGTGAAGC             CGACCGTG ATG TACGGGCG             TTTGACGATCTCTTC  59 248
        serC 1942219 .. 1942233 +  -9.2  -4.63218   GCGGCATTGCCGCGC               TGGCGC AGT GCGCCG               TTTTATTGAAGGAAA  91 54
        pheA 1943476 .. 1943503 + -20.6  -3.24708   CAGCGCATCGGCTGC        GGCGCCGCGTCG GCCC TGACGCGGCGCC         TGTCTTTACACCGTC  95 42
        aroA 1944957 .. 1944969 +  -3.3  -3.53091   GCAGGCTCGAAGCGC                CACTG ACG CAGCG                TTTCCACCACAGCCT  49 91
        serS 1947756 .. 1947786 + -19.1  -3.53811   CAAAAGTGTTCGTAA      C-CCAACGGGGCCG GTGA CGGCCCCGTTGGCG       TTTGAGGCAGGTGGC 100 183
 JH290_08770 NONE
 JH290_08775 1949634 .. 1949645 +  -7.2  -4.11751   TGCTTTTTTGATTGG                GCGG CTGG CCGC                 TTTTAGCGCGTTCCT  67 500
 JH290_08805 1952499 .. 1952511 +  -5.5  -4.30844   TTTATATAACATGTC                CGCTG CCA CAGTG                TTTTCGTCATAGGCT  72 430
 JH290_08840 1961116 .. 1961130 +  -7.8  -2.64243   GCTCTGGAAGGAACT               TCCCGT CAG ACGGGG               TGATGTGGGCTGTGA  51 295
 JH290_08850 1964966 .. 1964982 +  -2.1  -3.63068   CCCGGCTTGCTGTGC              CGACGGC TGT GGCGTCA              TTTGCAATGATGTGC  49 44
        radC NONE
 JH290_08870 NONE
 JH290_08875 NONE
 JH290_08880 1972678 .. 1972692 +  -2.1   -4.4195   TGGTTGCAGGTCCAG              CA-CGC TGCT GCGATG               TTTTCTCGCGTGTCT  65 241
 JH290_08895 1974886 .. 1974906 +  -2.3  -3.92522   TACCCCGGCAAACTT            CGCCTGGAC AAT GGCCCGGAG            TTTGTCGCGTTGGCC  54 408
 JH290_08940 1981389 .. 1981400 +  -4.4  -2.62192   ACTTCCACTCATGAC                GCAT GCCC ATGC                 CTTCCTTGCCTCCAC  41 193
 JH290_08945 1981629 .. 1981641 +  -9.1  -2.59927   AACGGATCGGCTGAC                CGCAG GCC CTGCG                TCGCTTCTGCCGCTT  56 27
 JH290_08955 1982462 .. 1982477 + -10.4  -3.65314   GCAAAAAAGCAAAAA              GCCCTG CGTA CAGGGC               TTCTTGCGCATTACG  70 320
 JH290_08970 NONE
 JH290_08975 1986937 .. 1986970 +  -7.9  -2.52464   GCTCGCTCGTCCCGT     CAGCGGTGCAGGCTG ACTG CTGCTGGCGCCGCAG      TGGATTACAGCGAGG  50 10
 JH290_08985 NONE
 JH290_08990 1991118 .. 1991146 + -11.7  -2.57013   CGCGTGCGTCGCTGC        GCCACGCGCTG CAGGGAT CAACGCGTGGC        TGCCTTCGATTGCCG  65 46
 JH290_09065 2003170 .. 2003198 +  -3.8  -3.23216   GCCCGCGGCGTCAGC       CGGCTGGAGGCAT GAGC ATGCG-CAAGCCG        TTGGTCATCATCGGG  47 11
 JH290_09070 NONE
 JH290_09075 NONE
 JH290_09080 NONE
 JH290_09085 NONE
 JH290_09090 2008685 .. 2008702 +  -2.6  -2.52464   CCGCACGCGACGGTG             TGAGCG CTACCC CGCGCA              TGCGTTCCGCCCAGA  37 23
 JH290_09095 NONE
 JH290_09100 NONE
 JH290_09105 2011609 .. 2011662 +  -2.5  -3.53012   CCGGTGGCGCTGGTG CT-ACGCCTGCG-ACGGCTCGC-GTG AGCGG CATGGTGAGCGGTGTGCAGGCGGCAG TTTGGCGCCACGCGG  47 2
 JH290_09110 NONE
 JH290_09115 2014428 .. 2014440 +  -6.9  -3.01712   CAACGCCCACCACGG                CGGCG CAG CGCTG                TCTTCCCACAGCACC  51 463
 JH290_09130 NONE
 JH290_09135 2019841 .. 2019861 +  -4.6  -3.59979   CCATCAACGCACGAC           GCTCGCGCG ACGC CGCACG-GC            TTTGCGCTACAGGCG  55 59
 JH290_09145 2022714 .. 2022724 +  -6.8  -3.51232   TGGACGTGACCACCG                 CGTG ATT CACG                 TTGCTTTGCGCACAG  57 21
 JH290_09150 NONE
 JH290_09165 NONE
 JH290_09170 2027323 .. 2027333 +  -4.6  -2.67705   TGGACCTGAGGTCTG                 TCGC GCG GCGG                 TCATCTGCATTGTCG  43 32
 JH290_09175 2028466 .. 2028480 +  -2.8  -2.78816   CGCGCTTCGGGTCGC               TGCC CATCGCC GGCA               TCTGGTCCACGGTGA  40 204
 JH290_09185 2031089 .. 2031108 +    -7  -4.56597   TGGTTTCCAGCCACT            GCTTGCGG TCGC CCGCGCGC             TTTTTGGCCAGCAGC  77 337
 JH290_09195 2033357 .. 2033390 + -23.9  -4.10657   AGCGCAGGTTTCGCC     CGCAGACGCCCCGGC TCCG GCCGGGGCGTCTGCA      TTTTGCACGGTGTGC 100 45
 JH290_09200 2035174 .. 2035198 + -10.7  -2.52015   CGCGTGCGTGATCCA          CGCCTTCTCCC GTT GGGAGAACGTG          GTTCGTAGATGTGGA  62 30
        kdsA NONE
 JH290_09210 2036775 .. 2036796 +  -9.3  -2.54896   GGCGTGATGGCCTAG           CGGCGCGCC GGCT GGCTTGCCG            TGCGTTCGCTGCCCA  56 26
         eno NONE
        ftsB 2038552 .. 2038579 +    -7  -3.28712   TGCCGACCCGGTAGA        TCACCCATGACCG GCT CGGT-GTGGGCGA        TTGTCCCGGCGGCCG  55 16
 JH290_09225 NONE
        ispF 2039859 .. 2039879 + -12.6  -3.23274   GCCGCATAACTGGCG            TCGCACGC GCGAG GCGTGCGA            TTGCATTCTGACGCC  73 32
        truD 2041259 .. 2041286 + -11.2  -2.79209   GCCGATTTCGAGCGC        CGGCCGCGCCCGC CTG GCGGCTGCG-CCG        TGGTGTTGCTAGTTG  63 233
        surE NONE
 JH290_09255 NONE
 JH290_09260 NONE
 JH290_09265 2045263 .. 2045273 +  -6.8  -2.75481   GGATGAAACTCTGCT                 GCAG AAT CTGC                 TCGTTCACCTTGGCG  48 480
        rlmE NONE
        ftsH 2048401 .. 2048426 + -17.7  -3.25072   GCTGCATGAAACGCG         CAAGGCCAGGA GCGA TCCTGGCCTTG          TTGCATTGTGGTGGA  91 54
        folP NONE
        miaA 2050646 .. 2050663 +  -5.5   -3.5594   TGAAGAGGATTTTTC             GATGGCC AAGG GGCAATC              TTTACAGGATCCATT  57 101
         hfq NONE
        hflX 2052257 .. 2052301 + -17.9  -2.83409   GACTGGGAGACCTGA TGC-ATGACGGTGCGGCCGC TGCGAT GCGGCCGCTCCGGCATCGCA TGTCATCCGTTGCTC  90 26
 JH290_09310 2053211 .. 2053258 + -12.6  -2.90194   GGTACCGCAGGCCGG GCGCTGCGTCGCTTGCTTTGCAG GTG CAGCAG-GCACGCGCTGCGGCGC TGTCATTCCGGAAGT  70 80
 JH290_09320 2056469 .. 2056489 +  -7.5  -4.08216   CAGTGCGCGCACGCG            TGAGCCGCA GCA TGCGCCTCG            TTTTCAGCAGCCTGC  70 258
        ubiB 2058349 .. 2058382 +  -2.9  -3.23692   CTGACGCGGTCCCTG     CGGCGGAGCAAGCAA TCGC TTGCGCGCACGGTCG      TTAGTAGTAATACTA  44 37
        lexA NONE
        recA 2060257 .. 2060301 + -14.4  -3.65812   GCGAGTGAGTTTTCC CTATCGCGGGGA-CGGCGG AGTCAGTG CCGTCGCTCCTCGCGGTAG TTCTATTGAAAGCCA  85 33
        recX 2060864 .. 2060887 +  -2.3  -3.66286   ACTGAGGGCGTCAGG          CCTGCTACC CTTCGT GGTTTCAGG           TTGTTCCGCTCCTCT  49 36
        alaS 2063627 .. 2063651 +  -2.8  -3.70571   CCTGCCAAGCCTTGC         TGGCTGGCAGG ATGT CCCGCTA-CCA          TTTCCGATCTTTATC  54 49
        csrA 2063969 .. 2063985 +  -2.9  -3.04248   CTGATTGATTCAAAA              GGGTTTA CGT TAGCCCC              TCTTACCCGGTATTC  43 37
 JH290_09355 2064145 .. 2064171 + -19.6  -4.62475   CCGCCAGTTAAAGAA         CACCCGCAAATC CCT GATTTGCGGGTG         TTTTCATTTGTGCGT 100 35
 JH290_09360 2067402 .. 2067426 + -10.7  -2.95491   GCCCACATTGCAGAG          CAAGCGTGTGC GAA GTGCGCGCTTG          TATCTCCTGCGGTTT  64 290
 JH290_09370 NONE
 JH290_09375 2070677 .. 2070694 + -11.3  -4.57569   ATGGGCAAAAAAAAA             CGACCAG CAAG CTGGTCG              TTTTTCCAAGAATGG  95 61
 JH290_09425 NONE
 JH290_09430 2077779 .. 2077807 + -23.3  -3.34398   TGGCAATGCAGACAG        CAAAACGGGCGCC CAG GGCGCCCGTTTTG        TATTTGCGGCCGGCG 100 48
 JH290_09460 2083306 .. 2083335 +  -2.7   -3.8482   CGGGCCTGCGCAGCC       CGGAATCGCCTGT CTAA GCAGGCTCTTCCA        TTTCCATTCCTTTTC  54 9
 JH290_09465 2086595 .. 2086610 +  -6.1  -4.22346   GACAGCGGGTTTCTC              CGGCT TGCTAT AGCCG               TTTTGAATACCTTTC  67 128
 JH290_09475 NONE
 JH290_09480 NONE
 JH290_09485 2095757 .. 2095782 +  -3.9  -3.14344   GGCCGGTGCTCGGAA         TCGGCATGTAC CCCC GTACACTCCGG          TTCCTCCGCGCCGTC  47 82
 JH290_09490 2095905 .. 2095922 + -12.7  -3.38314   CCATCGAACCCAGTG             CTGCCGC CCCC GCGGCAG              TGTTTCGCCATTCAA  74 94
 JH290_09495 NONE
 JH290_09500 NONE
        xylB 2102775 .. 2102797 +  -9.1  -3.18264   AGCACCTGCACGTCG           TCAGCCCGC TCTAC GCCGGCTGA           TTCATCACTCCCCCA  61 3
        xylA 2104214 .. 2104233 + -13.6  -2.57781   CGTCGCCGGCCGATG            GCGGTCAC CCCC GTGACCGC             TCCCTTGCATGTTTC  71 65
 JH290_09515 2105720 .. 2105752 + -29.3  -3.24747   TATCAGCATGAGAAA      CGCAGAAGGCCGCGC AAT GCGCGGCCTTCTGCG      TTGATGATCTCGCCG 100 58
 JH290_09520 2108066 .. 2108082 +  -9.4  -2.65388   TGCATGGGGCAACAC              CGCCTG CGATT CAGGCG              CTTATACGTTACGTG  56 475
 JH290_09535 2109834 .. 2109855 + -11.5   -2.8071   CTTCCAGGCATTTCC           CGGTCGCGC CTGA GTGCGGCCG            TCCCTTTCTTCTTCC  63 13
 JH290_09540 2111152 .. 2111183 + -15.8  -2.87132   ATTCCGGGCCCACAA      CGCAAAAGCCCCGC AATC GCGGGGCCTTGGCG       TGTCTGCAGAGGACG  79 361
        pcnB 2112693 .. 2112707 +  -4.2  -3.87815   GCCGCAGGCGAGTAG               GGCG TGCTGAC CGCC               TTTGTCGGCCTGGGC  58 26
        folK 2113160 .. 2113173 +  -2.3  -3.08464   GGGCGTCGATGGCTG               TGGGC TGGA GCCGA                TTGGGTAGATAATGG  41 4
        panB NONE
 JH290_09565 2114943 .. 2114969 +  -5.1  -4.11275   TGCTGGCCGGTCGAT         GCCTGCACTTT CCGCT AAAATGCCGGC         TTTCCTTTGCGTTGT  65 85
 JH290_09570 NONE
         pgi 2116914 .. 2116931 + -14.1  -3.27704   CGGCATGTGGAGTGA             CGGGGCC TTCG GGCCCCG              TTGCGTTTGAGCCAT  77 57
 JH290_09590 2122711 .. 2122723 +  -6.2  -2.79796   TGGTGTCAACAGCCG                CCGC GGGGA GCGG                TGTCGTCGAATGGCC  46 141
 JH290_09595 2124446 .. 2124485 + -20.8  -3.53811   ACATCACACGCAATA  AGTAACGCGGCGCGGAGA GCAC TCTCTGCGCCGCGTTGCG   TTTGGGCGCCGTCAC 100 51
 JH290_09605 2128094 .. 2128137 +   -21  -3.18681   CAGCAGGCACACCAG GCGCTCAGCGCCCGGGTTCGC GCT GCGGTCCCGGGC-TTGGGCGC TTGGTGAGCTTGCGC  95 334
        ispG NONE
 JH290_09625 2132223 .. 2132236 +  -4.5  -2.70932   TCACGTAATACGCCG               GC-CCC ATC GGGTGC               TGCTTGAGCAGCAGC  43 253
 JH290_09670 2140761 .. 2140774 +  -6.7   -3.2963   TTACCCGGTGCTGCG               TGCCT GGCG AGGCA                TTCTGAAAAGCTCGT  55 175
 JH290_09675 2143201 .. 2143222 + -15.9  -4.20696   AGTTTTGACATTGAC           CACGCTGCC GTCC GGCAGCGTG            TTTTCGGATTGATGC 100 33
 JH290_09690 NONE
 JH290_09695 2160528 .. 2160550 +    -9  -3.25896   CGCCGGCCTGTACGT           CACCGGTGCC AAC GGCAACGGCG           TGTTGTCGGTGGTGG  63 137
 JH290_09715 NONE
 JH290_09720 2168721 .. 2168736 +  -3.2  -3.66178   CGATGGTGTGATAGA              CGCCGCT GAT GGCG-CG              TTTGAGGTTGCCCAG  51 223
 JH290_09735 NONE
 JH290_09740 2173880 .. 2173891 +  -7.2  -2.76263   CGCCTGGCGCAGCAA                CGGC CCCT GCCG                 TCGTTACCTGATCGA  52 170
 JH290_09745 NONE
 JH290_09750 NONE
 JH290_09755 2180924 .. 2180940 +  -5.2  -3.82117   AAATTTTTTACTATT              GCAAAT TAAGT ATTTGC              TCTTTTGTCGATAAA  58 199
 JH290_09760 2182106 .. 2182119 +  -3.7  -3.57561   GCTTTGGCGGGTGAG               CGGCG ATTG CACCG                TTTGCGCCCTTGCCG  51 512
        thrA NONE
 JH290_09780 2187850 .. 2187894 +  -7.6  -3.14132   CACGCGTTGTTCGAT CAGGCAGCAGCGGTGCGCGC AGCAG GCACGCACCGCGATGGCATG TTCATCCCACGACCA  56 48
        thrC 2189730 .. 2189771 +  -6.4  -3.73302   GCCAGATGCGGCTAT CTCTAGGGGGTGCGG-GCC CACGT GGCACCGCGTCCCTGTGGG TTGTTGCATGTCTTA  62 76
 JH290_09795 2190978 .. 2191015 +  -6.9  -3.14468   AGCTGACGCATCTGC   GCCATCGGCGTGCGGCAG ACC CGGCTGT-CGATGATGGC   TTCGATATCGTGGCG  52 484
 JH290_09805 2192941 .. 2192970 + -17.9  -4.19735   GCTCGGGCGTTGCGG       GCAGCTGGCCGGA GCGA TCTGGCCGGCTGC        TTTCGTTTTCGGGGC 100 52
 JH290_09810 NONE
 JH290_09815 NONE
        hisD NONE
 JH290_09825 NONE
        hisB NONE
        hisH NONE
        hisA NONE
        hisF NONE
 JH290_09850 2200622 .. 2200632 +  -2.4  -3.91897   TAGGAGCGCGCTTGC                 GCGC GAT GGGC                 TTTATCGATAACGCC  54 61
 JH290_09855 2202635 .. 2202653 + -11.7  -3.08798   CCCCACAAACGCGAA             CGCCTCC ACGAG GGAGGCG             TCTTGGATCCGGGCT  68 60
 JH290_09890 2210877 .. 2210890 +  -4.5  -3.55444   CGATACGCACGCAGC               CGTTG ACCT CGACG                TTTCCGGAATCGCGC  52 378
 JH290_09905 2215044 .. 2215054 +  -3.2   -3.1082   TGCGCGGCGCAACGC                 CTGC CGG GTAG                 TCTCTTCACTACCTC  43 15
 JH290_09910 NONE
 JH290_09915 2217501 .. 2217519 +  -2.3  -4.23892   GCACGGCTCAGCTCG             CAGGCTG CAAAT CCGCTTG             TTTTGCGTAGTTGCG  59 282
 JH290_09945 NONE
 JH290_09950 NONE
 JH290_09955 NONE
 JH290_09960 2224244 .. 2224261 + -10.5  -3.72576   CCGCGTAGGACTGAT             GGCGGTG CGCG CGCCGCC              TTTGGTGCGCGGGAG  74 33
 JH290_09965 NONE
 JH290_09970 2226394 .. 2226407 +  -3.7  -3.41745   TGGCGTCACGCGCAG               CAGGC GGTT GCCGG                TTCATCTTGTGAAAC  51 45
 JH290_09975 2227307 .. 2227339 + -10.6  -3.72576   GCTTGCCCGAACCTA     GCGTCGGAC-CGGTCC CCA GCACCGCGTCCG-CGC     TTTGCTGCAACCGGA  74 167
        carA 2228937 .. 2228973 + -15.1  -2.53213   TTTGGTTTACATCGG    TGCGGGTGGGCGATC GTCGGTG GGACGCCCGCCCGCA    TCCATTGCGGCATTG  76 430
 JH290_09985 NONE
 JH290_09990 2230130 .. 2230140 +    -4  -3.29511   TGGGGATATCGAGAC                 GATT CAA AATC                 TTATGAAGGCCTGAA  48 1
        carB NONE
        greA 2233854 .. 2233866 +  -5.5  -2.90212   GCGCGAATACGAAGT                CGTCA GTG TGGCG                TATCTCGACTGATCG  48 1
 JH290_10005 NONE
        recJ 2236605 .. 2236625 +  -4.5  -4.09628   GCCGTTGACGATGCG            CCGGCCGGG TGA TCGGGCCAG            TTATTGTTTGACGTC  61 92
 JH290_10035 2241462 .. 2241484 +  -4.7  -3.90922   CGTTCCGCCGTCGCC           GCCCGCTTG CTAAA CTACCGGGC           TTGTTTGCCGGAAGT  60 56
        prfB 2242680 .. 2242692 +  -6.9  -3.14132   GGCGCACTGCAGCGC                TGCGG AGA CCGCG                TTGCTCGCCAGCGAC  53 75
        lysS 2244348 .. 2244358 +  -2.4  -3.95873   TTCCCCTACATGCGC                 CCGG AAG CCTG                 ATTTTTTTGTGCCGC  54 14
 JH290_10050 NONE
 JH290_10055 2246246 .. 2246263 +  -4.7  -2.90763   CAACCCCATCGACGC             CGCCGCG CGTC TGAGGCG              TCTATGAAGTCTCCA  46 12
 JH290_10060 2248629 .. 2248649 +  -8.2   -3.2614   ACTTGTTGCATCGCC            GCCCACGC GTGTG GCGTGCGC            TTGCTCTCGCGGATC  58 207
 JH290_10075 2252123 .. 2252139 +  -2.1  -4.19238   CTTCCGAGCCATCCA              GGCCCAG TGT CTGCGCA              TTTTCGCCTTCCAGG  62 419
 JH290_10085 NONE
 JH290_10090 NONE
        acnB 2258159 .. 2258191 + -22.1  -3.53444   GCGCAGCACGTTCGT      CGCAAAACGCCCGGC ATT GCCGGGCGTTTTTCG      TTTAACGGGCACTGG 100 45
 JH290_10100 2259195 .. 2259228 + -16.1  -4.00124   AAGCCGTACCCTCAC     CCCAA-CCCCTCTCCC GCA GGGAGAGGGGCTTTGG     TTTCCTTCTCCCATC 100 70
 JH290_10230 2301348 .. 2301364 +  -4.3  -2.74012   CGAGGATCTGAGCGC              CGTCAGC CTG GCCGATG              TAGTTGGGCTCATCC  42 84
 JH290_10235 2304674 .. 2304710 + -17.4  -2.96695   CTAGGCGCCAACGTG   TCGCGTCCATGCCTGCC GCGT GGC-GGTATGGGCGCGA    TGGTTTGGTGACGGC  87 37
 JH290_10240 2306106 .. 2306120 +  -9.2  -3.36327   GGTGGGCCGATCGAC               GCTCCG CTG CGGGGC               TTCTCGGTAGGGTAG  63 144
 JH290_10245 NONE
 JH290_10250 NONE
 JH290_10255 2308420 .. 2308442 +  -3.4  -5.28176   CCTCAGACAGCGGTA           CCCACC TCCGTCAAACC GGTGGG           TTTTTTGTGCCTGCA  85 481
 JH290_10260 2309944 .. 2309972 +  -5.8  -2.53263   ACGCGCAGCTGTTGA        GCAGACGAGCGC CAATT GCGCGCATCCGC        TGAGTTGCCAGTCCG  45 140
 JH290_10265 NONE
 JH290_10270 NONE
 JH290_10275 NONE
 JH290_10280 2313631 .. 2313661 + -16.9  -3.05816   ATGCTGGTAGTGAAA       CAACAACGGCCGC AGTAC GCGGCCGTTGTCG       TTAGATCAGGCATCC  88 160
 JH290_10285 NONE
 JH290_10290 2315580 .. 2315601 +  -2.9  -3.14132   TGCAGTCACTGTCTA           CGTCGCTGCC GCA GGTA-CGCCG           TTGATGGCCGGAGGC  44 75
 JH290_10295 2316669 .. 2316699 + -22.7  -3.05384   ATGCTGGTAATGAAA       CGACAACGGCCGC AGTAC GCGGCCGTTGTCG       TTAGATCAGGCAACC 100 157
        flgA 2378605 .. 2378627 +  -2.6  -3.16564   TTTCTGGCCGCCGTT           ATCCCCTACG ACC TGTAGAGGAG           TTCCTGACATGAGCC  43 61
        flgM NONE
 JH290_10565 NONE
 JH290_10570 2380744 .. 2380790 + -10.3  -2.78463   ACTCCCGATTCCCTA TTC-CCGGCCATTCCGCAACTCA TCA TGCGT-GCGGAATGCCTGGCGAA TGTGCTCGCGCAACT  60 171
 JH290_10585 2387714 .. 2387727 +  -3.8  -3.65902   CACACGCCGCCAGTC               GAGC AGTAGC GCTC                TTTGGGTGCAGTGGC  53 236
 JH290_10590 2388424 .. 2388455 + -14.5  -2.62983   GGCATTGAAAACAAC     CGGCGGGGCG--CCT GCCG AGGAACGCCCCGCCG      TCGTGTAACCGTCAG  74 61
        clpS 2393078 .. 2393090 +  -6.3  -2.57931   CGCCATCTGAACATG                CCTAT CCG ATAGG                GTTGTGGAAAATCCC  48 97
        clpA 2395463 .. 2395480 + -12.7  -5.47159   GCTGCTAGAGAAAAA             GCCGCTC GAAA GAGCGGC              TTTTTTGTGTTGAAG 100 56
 JH290_10650 2401732 .. 2401745 +  -9.5  -2.54387   TGGCGTGTGACGCTG               CGGCG TTGG CGCCG                TGCATTGGCCGTTTC  56 49
 JH290_10655 2403807 .. 2403824 +  -2.6  -2.59177   CCATCTGAACATGTC             GTGCGA TAGCGC TCGCCC              ATTCATCTATGAAGT  38 64
        lolA 2404547 .. 2404572 +  -6.1  -3.41602   GCATGGCGCAGCGAG         CGGCTGTGC-CT GCG AGCGCGCAGCAG         TTGTCGTGACCTGAC  55 68
 JH290_10675 2410469 .. 2410508 +  -4.1  -2.87132   TGATGATGCCTGCCC  AC-CCACGCCGGGGCGGC AGGCC GCTGTCCCGGCATCGCGA  TGTATCGACCGAGGA  44 95
        crcB 2411007 .. 2411038 + -15.2  -3.55563   TCGCAGCGCTGAGAC      GATCAAAGGCGTGC ATGA GCACGCCTTCGGTC       TTTACAGCATGCGGT  86 46
         ndk NONE
        rlmN 2417345 .. 2417356 +  -3.6  -3.14132   ATCGAGATGCGGCAG                CGTG ATAT CGCG                 TTAATGGCGGCCGCG  44 21
        pilW NONE
 JH290_10715 2418977 .. 2419012 +  -4.8   -5.0925   TATCCTCCGACGGCT   CCGTGGTGCCTGCTTC CGAATA GAAGC-GG-ACTGCGG    TTTTTCATTTTCCCC  83 3
 JH290_10720 2419691 .. 2419703 +  -4.7  -3.72695   GGCACCGTGCCCGAT                CCGGC GGA GCCGA                TTTGATGAAGCAGGT  58 8
        bamB NONE
         der 2422335 .. 2422351 +  -5.7  -2.78463   TCAAGGGCAAGTAAG              CCGGCAC GGC GCGCTGG              TATCCTGCGCGCCAT  46 27
 JH290_10735 2424045 .. 2424073 +  -9.5  -3.15544   CGCCATCCACCACCA        CATCGACGTCCTG CAG CAGGGCCTCGACG        TTACTGGCGGTCACG  59 485
 JH290_10750 2428006 .. 2428035 + -20.9  -3.53091   CAGATGCGTGATGGA       TACAGATCGCCGC TCTT GCGGCGATCTGTA        TTTGCAGCGAAAGAT 100 70
 JH290_10765 NONE
 JH290_10770 2431779 .. 2431790 +  -2.2  -2.78384   GCAACAGGAGAACAG                GTGT GAGA GCAC                 TGTGCTGGAACGGCG  39 20
 JH290_10775 2433085 .. 2433100 +  -5.4  -4.09864   GGCGGTGCAGGGCGT              CCAC-GC CGT GCTGTGG              TTTTGCGAGCTCGGT  64 160
         xth 2435378 .. 2435398 +  -6.8  -2.78596   GATGGCCACGCGGTA           CCCGGCATG CGAG CG-GCCGGG            TATCCTAGCCAGGTC  49 411
 JH290_10795 NONE
 JH290_10800 NONE
 JH290_10805 2438157 .. 2438167 +  -2.4  -2.55351   ACGCGATCGAACCAG                 CGGC GGC GGCG                 ATTCATGTCCGGGAA  38 522
 JH290_10815 2439318 .. 2439330 +  -3.3  -3.08992   TGGCGCGCCGCATCG                TCGCC ATG GCCGA                TCTGTTGGGATGACT  43 0
 JH290_10820 2440693 .. 2440724 + -21.6  -6.07627   GCGCATCCAGGACAA      CGGCGTCCTTCCGG TTTA CCGGAGGGGCGCCG       TTTTTTTTTGGCCAT 100 294
 JH290_10825 NONE
 JH290_10830 NONE
        nirD NONE
 JH290_10840 2447652 .. 2447665 +  -2.3  -2.94062   ATGATCAACTCGTCC               TCCCG CTGT CGTGA                TGTGGTGTTGCTCTC  40 77
        cobA 2448415 .. 2448444 +   -10  -3.02511   AGGCGGTGGGTTGAC       GCAGTGC-GCCGC GCTGG GCTGCTGCACTGC       TGTTAGCGGCGTGAC  62 27
 JH290_10880 NONE
 JH290_10885 2456330 .. 2456341 +  -2.2  -4.68424   GCAACTTTTGCACAG                CGAGC GCA GC-CG                TTTTTGCCTGCATTG  72 107
 JH290_10890 2456722 .. 2456745 +   -16  -3.88232   ATCCGCATAAGTCAC          CCGGCACGCG GCAA TGCGTGCCGG           TTCTTGTGTCAGCAA  95 31
 JH290_10895 2458021 .. 2458053 + -15.5  -4.18494   GTTGGTGCCGGATGG      CAGACAGGGCCCTGC ATT GCGGGGCCCTGTGCG      TTTTGGCTAACAATG 100 66
 JH290_10900 NONE
 JH290_10905 2459629 .. 2459663 +  -2.8  -3.43217   TGGTCTACCCGCGCC    GCGTGGGTTC-CGCA GAGACA TGCGAGCGCTTACGC     TTGTCGGTCTTCCTG  49 103
 JH290_10910 2460862 .. 2460874 +  -6.2  -3.28924   CGAGTGCGCTGGCCA                GCCG CACCA CGGC                TTCTGCGCGCAGCTG  53 274
 JH290_10920 2475063 .. 2475083 + -13.9  -4.99043   TGTTGAAACAGCAAA            GGCCCAGGC AAT GCCGGGGCC            TTTTGTTTGTCACCA 100 58
 JH290_10960 2486521 .. 2486550 +  -4.9  -2.95475   GCTTCGCCAGTCTGC       GGACGGGAGGTGCA CGA TGAGCCGC-CGTCC       ATTTGCTGTGTTGGC  46 6
 JH290_10965 NONE
 JH290_10970 2489359 .. 2489380 + -12.3  -2.62184   GCCTGCCCCAAGGCA           GGGCAGACG GTGG TGTCTGCCC            TGGTGTCGAACCCGA  65 284
 JH290_10980 2490152 .. 2490169 +  -7.7  -2.55351   AAGCACTGGATGCGG             GCTGGCGC CCG GCG-CAGC             GTTGATCTGCAGCGC  51 3
 JH290_10995 2494207 .. 2494242 +  -4.6  -4.26079   AATACGCTGAGTGAG    TGT-GTCAGCGCTGGGC GTT GCCCACGGCTGGCTGCG    TTTTACGTGCTTTGG  68 40
 JH290_11000 NONE
 JH290_11005 NONE
 JH290_11010 2496199 .. 2496220 +  -2.2  -3.35679   CCCGATGGCGACCAC           GGTGATCG CAAAGC CGATCGCG            TTCTGCATGGAGAGG  46 220
 JH290_11020 2497985 .. 2498010 +  -4.7  -3.14344   GGCCGGTGCTCGGAA         TCGGCATGTAC CCAC GTAAATTCCGA          TTCCTCCGCGCCGTC  48 82
 JH290_11025 2498174 .. 2498218 +   -10  -3.31461   TCCACGTCAAGGCGT TATTGCGACGTATCGCGCCGC ACAC GCG-TGCGATACGCCGCCACA TTGTCGCCATCGATC  66 135
 JH290_11055 2504617 .. 2504648 +  -2.8  -3.42996   GCTCCAGCGAACGCG      CGGCAGCGTTGGCGG CTT CCACCAGGGC-GACG      TTCTGCTGCGTGGTC  48 352
 JH290_11065 2507446 .. 2507457 +  -2.2  -3.68341   AGGCTGGTGTTGAGT                TTGC GCTC GCAG                 TTCTTCCATAGCCTT  51 158
 JH290_11095 NONE
 JH290_11100 NONE
 JH290_11125 2519160 .. 2519176 +  -2.9  -4.62984   TCTCCATGCTTCCAC              CACGGAA GGC TTCTGCG              TTTTCTCTCTGGTGG  69 366
 JH290_11130 NONE
 JH290_11135 2528096 .. 2528134 +  -8.9  -3.61398   CGAAATGAGTGGGTA  TGATTCCGGGGCGCTTAC CGGG GTAGG-GCACCGGAACCA   TTATTCGACGCCAAG  65 33
 JH290_11160 NONE
 JH290_11165 2533298 .. 2533308 +  -6.8   -3.0894   GATCGCCATTCTTTT                 CGAC GAG GTCG                 TTGCGTCAATGCTTG  51 134
        zupT 2534435 .. 2534473 + -18.1  -3.59979   CGTTGAACCCGAAGG   GTGCGCACGCGCCGCGC ATCAA GCACGACGCGTGCGTAC   TTTCCCGTGCCAGCG 100 325
         rne 2539537 .. 2539552 + -11.8   -6.0427   GTGGCGACAGAAAAA              GCGGCC TTCG GGCCGC               TTTTTTTTGTGTCAT 100 81
 JH290_11200 NONE
 JH290_11205 2543976 .. 2544007 +  -5.6  -3.04144   CCTCTTCCGGCGTCT      CGCACAGCTGCACG CCGC CGTGGCGCAGCGCG       TCTTCGGGATCGGCC  47 173
 JH290_11215 2545809 .. 2545820 +  -2.2  -3.05384   GCCGCGCCGTTGCGC                GATC GCCA GGTC                 TTCGCTGGGAAGCGC  41 507
 JH290_11290 2560603 .. 2560628 +  -8.3  -2.60496   ATTGGAAGGCTGGAC         GTTCGGTTACA CGCT TGTGGCCGGAC          ATATTTAGCGACGAG  53 75
 JH290_11345 2568990 .. 2569009 +  -4.3  -3.06831   GCTGCCCGCCGCGGT            CGAGATT GAGGAA GATCTCG             TTGCCTACCGGTTCG  45 325
         zwf NONE
 JH290_11360 NONE
         pgl 2573494 .. 2573505 +  -4.4  -2.52015   GCCCGCGCCTGCGGG                TGCA TTGG TGCA                 GTTAGTGGATGTCGG  41 9
 JH290_11370 NONE
 JH290_11375 2576747 .. 2576757 +  -8.2  -3.08996   AAATCCGAGCACTTT                 CGGC CCT GCCG                 TCTTCCCTAACGATC  57 488
 JH290_11395 NONE
 JH290_11400 2586654 .. 2586669 +    -6  -2.90723   ACGGCGTCAACTGAG              CACGGC GCAT GCCGCG               TCTCATTCGGCATGA  48 27
 JH290_11405 NONE
 JH290_11410 2586949 .. 2586967 + -13.8  -5.60689   GCCAATCATCAAGAA             GCCTCGGC ATT GCCGGGGC             TTTTTTCTTGTGTGC 100 37
 JH290_11415 2587771 .. 2587789 +  -3.8  -3.92075   TAGGCCGTCCGCAAG             CTGACAAC CGG GTTGTTCG             TTTATGCGTCCCCAT  58 53
 JH290_11420 2587883 .. 2587899 + -11.5  -5.45652   CGCCAACGACAAGAA              GCTCCGC ACT GCGGGGC              TTTTTTGTTGGGCGT 100 36
 JH290_11470 2595573 .. 2595604 +  -7.2  -3.36327   GCGCCAGCGCAGCGG      CGCCAGCAGCTGACG CGT TGTCAGCGGC-GACG      TTGTCACTAGAATCA  58 13
 JH290_11475 2599096 .. 2599120 + -17.9  -3.41602   CATCCGCCTGAACAA          CGCATCCTGGC GCG GCCAGGGTGCG          TTGTGATCAGCTGCG  95 30
 JH290_11520 2607769 .. 2607793 +  -2.7  -3.01791   GGACCGCGCAATGAA          GCGGTGGCGAA ATT TTCACCAGGGC          TCTTGACGGCCAGAT  41 27
        ppsA NONE
 JH290_11545 2613562 .. 2613617 + -18.7  -4.19238   CATGGGCACGCGGTG CAGTGAGTCAAACGCAAAGGGCCGCATC GAT GATGCGGCCCTTTGCGTT--ACT-ACAG TTTTGCGATTGCCAG 100 46
 JH290_11565 2616817 .. 2616852 +    -6  -3.51329   TTCGCGTTGGGCTGA    GCGGCAAGCGGGCGGCG GCA CTGCGCACGCTTG-TGC    TTGTGCTTGCACGTG  55 26
 JH290_11570 2618143 .. 2618162 + -12.8  -5.26918   TTGGTTGCGTGAAAA            GCCGGCTC GCGA GGGCCGGC             TTTTTTATGGACTCT 100 46
 JH290_11600 NONE
 JH290_11605 2628530 .. 2628555 + -11.8  -2.56288   ATAACGGCTACGTCC         GACCGCCGCA CCGCGC TGCGGCGGGC          TCGATTCAATCATTT  65 331
 JH290_11610 2629700 .. 2629727 +  -9.8  -2.91264   GTTCGGTTGGCCATG        GAACGCCTCAGC AAGC GCTGAGCCGTGC         TGTATAACTCCGCAC  61 5
 JH290_11615 2630424 .. 2630440 + -15.1  -5.75342   GTAACCCTGCAACAA              GCCGCGC AGT GCGCGGC              TTTTTTTTGCGGCGG 100 55
 JH290_11635 2635051 .. 2635076 + -10.4  -3.36803   GAGCGCCTGCGATGA         CGGCCGGCAC ATTGGG GTGCTGGCTG          TTCTGAATCACCTTA  66 39
        ykgO 2645864 .. 2645877 +  -9.5   -5.4833   CAAGACCCGAGAAAG               CCGCC TCCG GGCGG                TTTTTTCTTGGCTGA 100 58
 JH290_11690 2646387 .. 2646410 +  -5.3  -2.70932   TCCGCAACATCAGGT         GCGGTGC-GCA TGCG TGCCGC-CCGC          TGCTTGACACAACCG  44 49
 JH290_11695 2647592 .. 2647602 +  -2.4  -3.38812   TGCCGGCCTGCTGGC                 CGCC TGA GCCG                 TATTGTTCCGGCCGG  45 19
 JH290_11700 NONE
 JH290_11705 NONE
 JH290_11710 2650341 .. 2650363 +  -9.2  -3.13191   GGGAGTGCGGTCGCC           GCATCAGC GCCAGCA GCTGATGC           TCTCTGTGTTGTAGG  61 46
 JH290_11765 NONE
        scpB NONE
 JH290_11775 2668579 .. 2668596 + -12.7  -4.93365   CGTGCAATAAAAAAA             CGGCCCT GCGA AGGGCCG              TTTTTCGTTATCGCC 100 50
 JH290_11785 2671448 .. 2671460 +  -9.1  -3.25073   GGCCGCGCTGATCGT                GGTGG TCA CCACC                TGTTCCTGTTCGCGG  61 373
        ccmA NONE
        ccmB 2675029 .. 2675041 +  -3.3  -2.64099   GTTGATGCGACACTC                CGCTC CGC GAGCA                ATTGTCATAACGAGA  39 60
 JH290_11810 2675802 .. 2675817 +  -6.1  -2.63257   ATGGATCGTGCGCGA              TGCGG AGGGCA CCGCA               TGAATTATCTGCCGT  46 7
 JH290_11815 NONE
        ccmE 2676527 .. 2676542 +    -6  -3.31144   GCAGGCGCGCGGTAT              CGCCGG CCAT CCGACG               TTGTAAGAATGACAG  52 110
 JH290_11825 NONE
 JH290_11830 NONE
 JH290_11835 NONE
 JH290_11840 2680535 .. 2680553 +  -2.3  -3.28791   TGGAGCTGGTCATCG            GC-CGCTG AATG CTGCGCGC             TTGTAAGCGCACCAT  45 18
 JH290_11845 NONE
 JH290_11850 2682925 .. 2682946 + -10.8  -3.28712   CAGGTTCTCGCGCAC           CGTGCCGG CAAACA CCGGCGCG            TTCTGCGGCAGCCAG  66 453
 JH290_11865 2687683 .. 2687718 +  -2.4  -2.71246   ATGCCGGCGATGCGC    TGGCTGGCGCTCAACCG TAA CGGTCG-GAGACACCCA    TGGATTTCATTGGAT  39 6
        cydB NONE
        cydX 2689061 .. 2689077 +  -2.9  -3.67417   TTGATAAAAAAGTTG              TCTGCAG TGC TTGCCGA              TTTGGCATTCCCTAT  51 37
 JH290_11880 2689206 .. 2689220 +  -8.5  -4.89567   TTTCAAAACACACAA               CCGGC CTCGT GCCGG               TTTTGTGTTTTCAGG  90 43
 JH290_11885 2690741 .. 2690751 +  -6.8  -3.05384   GGCCGAACTGGAATG                 CCAG CGG CTGG                 TTGGCTGCCAGCGGC  51 224
 JH290_11900 2693775 .. 2693786 +  -7.2  -2.80816   ATTGCACAAACTGCT                CGGC ATTG GCCG                 TGTCCTGCGTGGCGA  50 293
 JH290_11970 2707580 .. 2707604 +  -4.9  -4.27467   GAAGACACCCCGCAG          GGCGTGCGC TGGAAGC GCGCATGAC          TTTATTCCCTTCTCC  68 2
 JH290_11975 NONE
 JH290_11980 2709837 .. 2709891 +  -9.9  -3.12668   GGGCATTCCCGTGAA CGCCTCTCGCGCGCAAGC-GCGCTCCT ACA AGG-GCATTGCTGTCGCGTGTGAGGCG TTGCGTGTGCGACTG  64 270
 JH290_12000 NONE
 JH290_12005 2714701 .. 2714722 + -15.9  -2.84878   GTACCCTCACCCCAA           CCCCTCTCC CGGG GGAGAGGGG            CTTTCACTTGCCGGC  79 134
         eat NONE
 JH290_12015 NONE
        eutC 2719008 .. 2719049 + -23.8  -3.57144   TGCCTGAATAAACGA AGAGCGCATGGCGCTGCC TGAATC GGCGGCGCCATGCGCTCG  TTTCCAAATCACCAA 100 30
 JH290_12035 2720988 .. 2721010 +  -6.3  -3.02144   CGCCTTCGATCTGCG          CGGTCAT-CG GGCG CGCATGGCCG           TCTTCGACGCCATCC  49 415
 JH290_12050 2725137 .. 2725169 + -17.7  -3.81146   GTCTGCATGCCTGTG      GCGCTGCTGTGGCCG GCC TGGCCGCAGCAGCGG      TTATTCATTCGGCGC 100 51
        epmB 2731744 .. 2731754 +  -4.6  -2.52464   ACGTGGCTAGCCGCA                 CTGC TCC GCGG                 TCGGTTAGGCGACAC  43 449
 JH290_12105 2736746 .. 2736771 + -19.1  -3.17392   ACCGCACCAAACGAA         GAAGGCCGGGA TCAC TCCCGGCCTTC          TTGCGTTACAGCATG  93 135
 JH290_12115 NONE
 JH290_12120 2739175 .. 2739202 +  -2.6  -3.45945   CCAGGGTCTCGATCA        GCGCCGGCAGTTG CTC CAGCTCGC-GCGC        TTCCTTGTAGCTGAG  46 259
        dbpA 2742892 .. 2742912 +  -5.3  -3.72576   CCGCATCCAGCGGCG            TGGTGCGCC AGG GTTGCGCCA            TTTCATCCAGCGCAG  57 494
 JH290_12145 2746024 .. 2746038 +  -7.1  -2.50935   CACCTGCGAACCAGC               CGCTG CCGCT CAGCG               ATTGCTCCATCCAGT  47 287
 JH290_12160 2747688 .. 2747706 +  -3.1  -2.78463   GGCCATGAAGACCCT            CG-C-GCGG AGC CCGCAGGCG            TATCATGACCGCCCT  40 33
 JH290_12165 NONE
 JH290_12170 2749508 .. 2749519 +  -4.4  -3.06815   CATACATGGACGCGC                CGAA CCCC TTCG                 TGTATTAAAGCCCGT  45 68
 JH290_12175 2751725 .. 2751739 +  -8.5   -5.4505   CGCTGTAACAAAAAA               CCCGC ATGAC GCGGG               TTTTTTGTTGAGAAG 100 130
      gluQRS 2753692 .. 2753706 +  -4.2  -3.15147   CCTCCGCAGCGTCGC               GGGC GCCGCCA GCCC               TATCTGTTCATTGGA  47 78
 JH290_12190 2754517 .. 2754528 +  -4.4  -5.45726   ATCCGTGTCAAATCA                TGCT GCGC AGCA                 TTTTTTTCCCGTCTG 100 73
        phaR 2755638 .. 2755652 +    -7  -3.55761   CTCGTCCGCGCGCTC               CAGGCC ATC GGCCGG               TTTGCCACGTGCCTG  58 468
        queG 2763985 .. 2764026 +  -4.4  -3.34895   GGCACAACACGGCCT GTAGCTGCGTCAGCG-G-AGC GCT GCTGCACGCGGGCGCCGC-AC TTGCTTCACCGTCCA  48 22
 JH290_12235 2765643 .. 2765657 +  -7.8  -3.44051   CGCGCGCGCAGCTCC               GGGCAC AAG GTGTCC               TTCTCCTGCTCGCCG  59 207
         rnd 2770021 .. 2770043 + -11.2  -3.69702   AGCCCGTGCCTCAGC           CCTGGTCCGC CCA GCGCGCCAGG           TTCTGTTGAATGCTG  76 120
 JH290_12265 2773411 .. 2773448 +  -6.1  -2.73483   ATCCCCCGATGCGGC   CA-GCCACGCAGGCAGCC CTT GGCGAACCGCGTGGCATG   TGGTTAGAATCGAGT  46 57
 JH290_12270 2773565 .. 2773614 +  -6.3  -4.56597   CATCCCGAACGGGAT GGAAGAAGGCCGG-AAACCCTGCT GTA GGATGGGTTGACCGGCCTTCTGCA TTTTTGGCCGGAGCG  78 46
 JH290_12280 2774617 .. 2774641 +  -7.8  -3.53012   ATGGAACTGCGTTGC          TCGGTGGCGG GGCAA TCGCCAGCGA          TTTAGCCGCGCCGCG  60 48
 JH290_12290 2776731 .. 2776741 +  -8.2  -2.54504   TGATCAACGCCTCAC                 CGCC GCA GGCG                 CTCTGTTTCGCGGAT  53 38
 JH290_12305 2779860 .. 2779878 +  -5.2  -2.78384   ACCGGCGACTGAGCG             AGCCATTG CTG CAGTGGCG             TCTGCTCGGCGGCGC  45 29
 JH290_12315 2785354 .. 2785403 +  -6.4  -2.60244   GCGCTGCAATCGGTA TGGCGGACG-CG-CGAGACCTGCA TCGG TGCAGTGCTCGACAACGTCCGCGA TCGCTTACTTGACCA  46 448
 JH290_12360 NONE
        miaB 2794168 .. 2794178 +  -6.8  -3.28712   TCATTGACTAGCGCG                 CCGT GGC ACGG                 TTCTGCACCGCAGCG  55 237
 JH290_12370 2796059 .. 2796072 +  -3.7  -3.75332   ACCCCGGACGCCAAG               GCCGC CGGC GCCGC                TTTCCATTACGCGAT  56 475
 JH290_12375 NONE
        ybeY NONE
 JH290_12385 2797812 .. 2797853 + -10.7   -2.8655   ACTTGCCCTGAGCGC TGCGCGGCCCCGCTCGC CCGCCCAT GCGGGCTGCGTCGCGCG  TCTGGTCTGCCTCGA  64 30
 JH290_12390 NONE
 JH290_12395 NONE
 JH290_12400 2801642 .. 2801679 +  -5.5  -4.74084   GTGACTTTTGCCAAG   ACAAAAGTTACTCGCGCC ACA GGCGCG-GAAGCCTTTGC   TTTTGCTTTTGCTTT  80 404
 JH290_12410 2804119 .. 2804145 +  -4.2  -4.65895   GGGAGCAGACTGCAG         CGCAAGTTGCGC ATC GCGCAGGCGGCG         TTTTTCACTGCGCGC  72 189
 JH290_12470 NONE
 JH290_12475 2819954 .. 2819964 +  -8.2  -2.80816   GAGCTGGTACCGGCT                 GCGC GAT GCGC                 TGTGGTGACTGCGAC  54 7
 JH290_12480 2821346 .. 2821359 +  -4.5  -3.15544   CGCCTGGCCAGCTGA               GCC-GC AGC GCTGGC               TTGATCCAGATCAAC  47 26
 JH290_12485 2822378 .. 2822405 +    -9  -3.05596   CGAGGTAATAACCCA        CCGCCTGCACGC CGTA GCGTGCGGCCAG         TTGGGTGGCCAGATA  57 511
 JH290_12515 2830889 .. 2830900 +  -5.8  -2.87132   TGGCGTGCCGACGCG                CTGG CTGG CCAG                 TGTGTCACCGGGCCG  48 71
 JH290_12520 2832239 .. 2832255 +  -4.3  -3.02144   CTGGGAGAACGTAGT              GCCTGTG TTG CACGCGC              TGTTGGAGCACCTGC  45 316
 JH290_12525 NONE
 JH290_12530 NONE
 JH290_12535 2839478 .. 2839496 +  -8.1  -2.72049   CCGCCACGTTGCGCA             CGCAGTG TTGCC CGCTGCG             TGCTTGAACCATCTG  54 215
 JH290_12540 NONE
 JH290_12545 2842122 .. 2842144 +  -6.2  -3.85698   CAGGTCAGCACTGGC           AATTGGGTGC TGA GCACCCAACA           TTTCTCGCAACCAAG  62 447
 JH290_12565 NONE
 JH290_12570 NONE
 JH290_12575 2853492 .. 2853510 + -17.4  -5.74122   GCTGTAAACCAAAAA             GCCCCGGC AAT GCCGGGGC             TTTTTTTGTGTGCTG 100 52
        ptsP NONE
        pfkB NONE
 JH290_12595 2860855 .. 2860865 +  -2.4  -3.68324   TCGCGTCCGCCATCT                 CGGC CAC GCCC                 TCTTTGTTCGGAGTC  52 166
 JH290_12600 2862177 .. 2862193 + -13.7  -2.71731   GACCGGTAGAGAAGC              TGCGCGC GTT GCGCGCA              TGCTTGGCGGGTACC  72 39
 JH290_12630 2869658 .. 2869699 + -16.7  -4.67353   CCGAAGAGTGATACT AACAATGCCGCAGACGGAT CAGT GTCCGTCTGCGGCATTCTG  TTTTTACGTGCCTAA 100 30
 JH290_12635 2871257 .. 2871275 +  -5.3  -2.82623   TAGCAACCAACCCTC            GGCCATAG GAAC CT-TGGCC             TCCTTGTCGCCCCAG  44 124
 JH290_12650 2874201 .. 2874215 + -12.8   -4.4891   CCAGAAACGACAAAA               CCGCGC AAT GCGCGG               TTTTGTCGTGATCGA 100 82
 JH290_12685 2882758 .. 2882786 + -20.4  -2.52543   CCACACGACAACACG        GTTGCGGCGACC CATGA GGTCGCCGCAAC        TGCATTCGCACACGT  91 207
         upp 2889893 .. 2889906 +  -8.1   -4.0162   ATTCACTTCTGCCGA               CGCGT AGCG ACGCG                TTTGTCATGTCAGGC  73 225
        htpG 2898165 .. 2898192 +   -12  -4.57569   ATCAAATTTGAGCCT        CTAAGACCGGCG TAAT TGCCGGTCTTTG         TTTTTGAGACGATGC 100 46
 JH290_12760 2899973 .. 2900002 +  -2.9  -3.72695   AATCTGAATAGCGGT      CAGGCTTGCAGCC ATTTAG GGC-GC-AGTCTG       TTTGATGCGACAAAT  54 30
 JH290_12800 NONE
 JH290_12805 2913848 .. 2913891 + -10.1  -2.52543   CACGCTGGCAGTCAC GCCGCCGCCGGCCTGCGTGC TCGCC GC-CACGGCCTGGCGGGGGC TGCCTTCCACCGGCT  56 237
 JH290_12885 NONE
        ftsY 2934637 .. 2934650 +  -3.7  -3.39895   TCGCACGAAGCGCGC               AGCCG CATG CGGCA                TTAATTCATCGCCCC  51 427
        mutY 2935868 .. 2935878 +  -3.2  -3.34344   ACACTGCCACTCCAG                 CGCA CCG TGTG                 TTGGTTGAGCCCTGC  46 104
 JH290_12900 2936335 .. 2936375 + -12.6  -3.09492   GCGGGCCGACATCAT GACT-CGCCGGAGTAGGCG CCCA CGCTCACTCCTGCGTAGTC  TGTTCGGCTTCCGCC  71 141
 JH290_12920 2940286 .. 2940324 +  -7.3  -3.14683   ATCACCTCGTGCCGG  CTCAGACGCAGCGCCTCG CCAT CGC-GCTCTGCGTCCGGG   TTGGTCACCCAGTCT  52 246
 JH290_12930 2941313 .. 2941360 + -22.1  -3.05647   GGCGGCAATCGCTGA CCGCGCGGCGCTTCCGGAGGGC CATGC GCTCTCCGGAAGCGCT-CACGG TGTATGTCATTGACC 100 26
         cho 2945977 .. 2946002 +  -3.9  -3.72695   GGCCGGTGCTCGGAA         TCGGCATGTAC CCAC GTACACTCCGG          TTTCCTCCGCGCCGT  56 351
 JH290_12945 2946489 .. 2946509 +  -4.6  -4.15788   GCGCGCAGGTCGTGT            TCGGGCTG AGCCG CAGCCGGG            TTTCTTGCGCCGGTT  65 457
 JH290_12955 2947143 .. 2947154 +    -3  -3.63515   GCCCGGCGGGCACCG                TACT GCGT AGTA                 TTCTTGGCAATGCAC  51 52
 JH290_12960 NONE
 JH290_12965 2949828 .. 2949860 +    -9  -2.72379   AAGTGCATCGCTCGC     GTGGCTCGCGTGCCG CTTG CGCCTCGCG-GCCGC      TAGTTAGGCCGTTGG  57 350
 JH290_12970 2951078 .. 2951092 +  -5.6  -2.53263   GCCACGCACGCATCA               CGGCTG CTG CAGCCA               TCACTTCCCGCTGAC  45 104
         dxs 2953086 .. 2953101 + -10.4  -2.80935   GCGTTGAATGCAGCG              GCAGGC TGAG GCCTGC               TGTGCTGCATGGCGT  60 17
 JH290_13125 2985107 .. 2985133 +  -5.1  -3.71848   CGTTGAAGCATTCAT        CGCTGGTG-CTC GGAT GAGTCGCCATCG         TTGTTGGTCGCGACC  58 150
 JH290_13150 2994254 .. 2994275 + -12.3   -2.9006   GAATACGTATGCAGG           CCGCGTTTG CGTG CAAGCGCGG            TGTCTACCATACGTT  67 208
 JH290_13155 2997433 .. 2997445 +  -4.7  -4.45168   CAATCAAACGCGTCA                CGCCG AAA CGGCA                TTTCTATTTTGCCCC  71 302
 JH290_13200 NONE
 JH290_13285 3021447 .. 3021464 + -12.7  -4.17958   ACATAAAACAAGAAG             GCCGCGA CTAG TCGCGGC              TTTCTTGAACATCTT  89 35
 JH290_13350 3036906 .. 3036947 +  -2.3  -4.13014   GCATGGCCACGCATG GCA-GTGC-TGCCGAGC-GG CAAGC CCAGCACGGCACGCACGTGG TTTTCGAACTGTGAA  58 503
 JH290_13365 3038617 .. 3038629 +  -3.4  -2.52896   CAGCCAGATCGCCGA                CTTC CCCGA GAAG                TGAGTTCGGCCATGA  39 10
        nadC 3039522 .. 3039555 + -10.2  -3.31905   TTACTGATTTCACGC     CTGTCCGCAGGCAG CTCTGT CAGCCTGCGCGCAG      TGTTCTATGCGGAAT  66 34
 JH290_13375 3040928 .. 3040938 +  -6.8  -2.57132   CGCGCCCCCACGCGC                 GTGC GAA GCAC                 CTTCTCCCGACGAGA  48 316
 JH290_13505 NONE
 JH290_13510 3069825 .. 3069846 +  -6.5  -2.53213   CAGACGATTCTGGAT           TCGGCGCGG AATG TTGCGCTGA            TCCATTGCCCAGTTG  45 161
 JH290_13565 3081467 .. 3081492 + -14.7  -4.15044   AAGAGTTCTCAGCTG         CCCGAAGCGTC TGAT GACGCTCCGGG          TTTATTGCGCGACGC 100 120
 JH290_13615 NONE
         psd 3092053 .. 3092081 +  -9.5  -2.78816   AAACACTTCACTCGC        GCGGCGCGGCG CTACGGT CGTCGTGCTGC        TGTCGTCAGACCTCG  57 65
 JH290_13625 3093472 .. 3093487 +  -6.8  -2.81547   CGGCGCCTTCAGGCC              GTTGGC CTTG GCCAGC               TCCTTGATCTCGCAC  50 185
 JH290_13635 NONE
 JH290_13640 3097639 .. 3097652 +  -6.7  -3.01712   CGCCGGCGCTTACCT               TGTCG CCGT CGACA                TATTCACCGACGAAG  51 384
 JH290_13650 3100366 .. 3100415 +  -6.9  -4.18018   AGGCAATCTCCGCGC TG-CGTGGCTGCTCGCTTGCCAGC TCT GCCAGCAGGCGCTCGGCCTCGGCA TTTTCCATGCGCCCC  72 481
        greB 3102163 .. 3102207 +  -5.6  -3.28712   CTGGCCGTGTGCGGT GGC-AATGCAGCGCACCTTGA ACAG TCCAGCTGCGCTGCGGAAGCC TTGTCGCGCGCGAGC  52 167
 JH290_13670 NONE
 JH290_13675 NONE
 JH290_13680 3105292 .. 3105323 +  -7.2  -4.13767   AGGTGCCCCGAAGGG      GCGGATGAGGGTAC GCGC GAAGCCTCATGCGC       TTTTCGACTGCACCG  72 121
 JH290_13685 3105853 .. 3105898 +  -7.4  -3.21912   GAAAAACAGCATTTG CGCCACGCCTTCGTTGGCGT AAATGC GTGCCGGCAGCGGCGTGGTG TTGCTGAATTCCAAC  56 154
 JH290_13700 3110606 .. 3110624 + -13.1  -5.13137   GCCGAAGCACTGGAG             GGCCCCG CTTGT CGGGGCC             TTTTTAGTTTCTTTC 100 53
 JH290_13705 3114174 .. 3114191 + -14.1  -5.60993   CTGTAATGCTCTCCA             CGGCCCC GCGA GGGGCCG              TTTTTTTGTCCGAAG 100 211
 JH290_13720 3118944 .. 3118962 + -13.2  -2.53876   TGATCTGGTAATTCG             TTGCAGGC GCC GCCTGCAA             TCGCTTCCAGTGCCA  67 30
 JH290_13725 3121145 .. 3121193 +   -17  -3.61103   AGCGCCCTGCATCAA CGGCAG-CAATGAAAAGAGCGCGG AAT CCGCGCTCTTTTT-TTGTCTGGCG TTTGCCGTCGCGTTG 100 44
 JH290_13760 NONE
 JH290_13765 3128639 .. 3128655 + -15.1  -6.06723   CATAAACACGGAAAG              CCGCGGC CTT GCCGCGG              TTTTTTTTTCGCCCC 100 56
 JH290_13770 NONE
 JH290_13775 NONE
 JH290_13780 NONE
 JH290_13785 NONE
 JH290_13790 3134475 .. 3134486 +  -3.6  -2.62616   TGATCCTGACTGACC                CGGC TCAC GCTG                 TCCTATGGCGCATCA  39 28
 JH290_13795 3136573 .. 3136630 +  -7.8  -3.10522   ATCAGAGAGGTGACG CGAGGCCGCATAACCACCGCTGGTCAGC GTCC GCT-ATCAGCC-TGGTAATGCGCCATCG TGTCTTCGATGCCCT  54 152
 JH290_13805 3138225 .. 3138236 +  -7.2  -3.53012   CAACCACGGAAAATG                CGGC TGCC GCCG                 TTTGAACAGGCGCCC  58 86
 JH290_13820 NONE
        tilS 3143596 .. 3143612 +  -3.5  -3.93695   CGAATTGACCCGCCT              GCGCGCG CGC CGCACAC              TTTGTCGATGGTCAA  56 33
 JH290_13830 NONE
 JH290_13835 3144925 .. 3144940 +  -3.9  -3.35679   GGAGGCGTGGAGCGT              CCTCG AATAAC CGGGG               TTCTGCGTCACAAAA  48 190
 JH290_13840 3146311 .. 3146340 + -22.3  -4.12188   ACTTTCTAAAAACGC       CAAAGGCCCGGCA TGAC TGCCGGGCCTTTG        TTTTACGCGTAATCA 100 48
 JH290_13855 3149409 .. 3149429 +  -2.5  -3.54459   CCAGATCGTTGCCGA            TCATGCGCA CCT TCTGCATGG            TTTCCGGGCCGTTGC  48 410
 JH290_13865 3151712 .. 3151724 +  -2.6  -3.53012   AGGTCTTGGCGCCAA                TCGC GCCCA GCGG                TTTGCCGAGCACCGC  48 157
 JH290_13885 3158619 .. 3158635 + -10.1  -6.07627   GCGCACTCGAAAAAA              CTGCCCG TCA TGGGCAG              TTTTTTTTTGCCCGT 100 59
 JH290_13890 3162003 .. 3162026 + -13.8  -4.71426   CCGTCACTGTCGTTT          CCCCAGCCCC GGAA GGGGCTGGGC           TTTTCTTGATCGCCA 100 49
 JH290_13895 3163103 .. 3163133 +  -8.9  -3.05343   TTGAAGCGTTGACCG      ACGCGGCGGCCTGC ACCT GCAG-CCGCCGCAC       TGTTGCCAATCTCCA  57 37
 JH290_13905 3165749 .. 3165774 + -20.5  -3.25823   GACCACGCGCAAACA         CGAACGGCGCC CGAG GGCGCCGTTCG          TTGGTGTGACGCAGC  95 48
        trxA 3173631 .. 3173683 + -23.6  -3.61764   CGCTGTTGTTCTGAT CCCTG-CGCGCTGCAGATGCCGGCCG GCG CGGCCG-CATCTGCAGCGCGACATGC TTTCGGCATTACTCC 100 27
 JH290_13945 3174249 .. 3174273 +  -2.2  -3.38046   AGACGAGGTCGATTG         C-CGTC-CTCAC CAC GTGAGTGATGCG         TCTTTGCAATGCAAA  45 74
 JH290_13950 3174733 .. 3174752 + -12.1  -3.44229   TTTGCATCCTCACAG            CGCCGGC CTTCGT GCCGGCG             TTGTGCTGCTGGCGT  74 148
 JH290_13955 3176161 .. 3176173 +  -6.2  -3.56099   CTGCCGGCGGCAGAT                CGCC CATGT GGCG                TTTCACCAGGTTGTA  56 433
 JH290_13965 3178089 .. 3178105 +  -5.1   -3.3903   AAAATCGCTTGACAC              CTCGC ACACCAA GCGAG              TTAATTAGCTAATTC  50 242
 JH290_13970 NONE
 JH290_13975 NONE
 JH290_13980 3180404 .. 3180414 +  -3.2  -4.28994   GCGCCCGCCTGGCGG                 CTGC GCA GTAG                 TTTTGATAGCTGCTC  64 140
 JH290_14000 NONE
 JH290_14025 3191456 .. 3191467 +  -7.2  -2.72344   GCGGCTGGCGCGCTA                CCGC TGTG GCGG                 TGGTTGCAGCTGCGA  52 477
 JH290_14030 3192711 .. 3192721 +  -2.4  -3.53012   TAGGAGCGCGCTTGC                 GCGC GAG GGGC                 TTTACCGGGAACGCC  47 70
 JH290_14050 NONE
 JH290_14055 3199933 .. 3199946 +  -3.7  -2.73875   GCCTCGGCGGTAGTT               CCACG TCAT CGCGG                TGGTGTTGCCAGCCG  42 134
 JH290_14060 NONE
 JH290_14065 3200866 .. 3200877 +  -2.2  -3.39895   CGGTGTACAGCGCGG                CCAG TGCA TTGG                 TTGCTTCATACAGCG  46 327
 JH290_14095 NONE
 JH290_14100 3206770 .. 3206786 +  -3.6  -2.52676   TGTTTTCCGATCAAC              GTGCAG CGCAA CTGCCC              TGACTTCGCGACGTC  39 6
 JH290_14105 3208122 .. 3208178 +  -8.7  -2.94416   ACGCCACCACCCGGC ACGCCCTG-AG-C-CATCGCTGCGGCCC GCGC GCGCCGCAGCGGTGCGACAATAGGGCGA TGTCTGCTCCCGATC  55 17
 JH290_14110 3209672 .. 3209689 + -14.1  -4.05446   ATAGGCATAAAAAAA             CGCGGCG CAAG CGCCGCG              TTTCTGGTTGCGAAG  90 158
 JH290_14125 3212677 .. 3212703 + -10.1  -5.02074   CTCCCGCCGTCACAA        G-CGAGGCCGCC TTCG GGCGGCCTCTTC         TTTTTTGAAGAGTGC 100 52
 JH290_14130 3213428 .. 3213470 +  -2.6  -2.87051   CGTGCTGGAGACACA CGCA-TGAGCACGTCTGCG GCGCCA CGCGCGCGTGCGCACTGGG GTTTGCTGGTCACCG  40 19
 JH290_14135 3214733 .. 3214749 +    -8  -2.77899   GCGACGCCTATCGAA              GCGATG GCTTA CATCGC              TGATTGCTCCAGGCA  52 98
 JH290_14160 3223498 .. 3223520 + -13.5  -4.21908   AGGCGGCTTGCGAAA           CACAGGCGT TGGGC ACGCCTGTG           TTTTGCCTGCTGGTG  93 118
 JH290_14165 NONE
 JH290_14170 3226606 .. 3226638 + -19.2  -3.53012   ACCGATGTGAGCGCA     G-GCTGGCTGCCGGC TGAT GCCGGCGGCCAGCAC      TTTCGGGCGCACAGG  95 31
 JH290_14175 3227205 .. 3227245 +  -7.3  -3.84451   GCTGGTTGGAACGGG  CGCGGCGGGCGCGGTATTG CAC CGAGGCCTCGCCTGCGGGG  TTTGCGTTTGGCGAA  68 62
 JH290_14190 3230398 .. 3230411 +  -6.7  -3.19175   CTGCGATTTGTCGTG               CTGCA TCGC TGCAG                TTACATCTGTTCCCA  53 255
 JH290_14200 3233226 .. 3233259 + -23.3  -2.62184   CGCTAGTGCTAGCCG     CCGCCACCGTGTGGA ACGA TTCACACGGTGGCGG      TGATGTACCGGGCAC 100 35
 JH290_14210 3235034 .. 3235048 +  -4.2  -2.70932   ATCGCCACTGTCGCG               TTGGCG CCA TGCCAG               TGCTTGACGCCCGGC  41 340
 JH290_14220 3236703 .. 3236756 + -28.3  -3.14344   CGCGCTTGGTAGGAG CGCGCTTGCGCGCGATGAAGCGTTA TCGG TAACGCCAAATCGCGCGCAAGCGCG TTCCTACGGGACCTG 100 243
 JH290_14250 3245777 .. 3245788 +  -7.2  -3.16267   GGGGTATGCGTGTAA                GCCG GCGA CGGC                 TTGAGTGTGGTTGCG  56 10
 JH290_14295 3255203 .. 3255228 +  -3.2  -4.08692   GCAGCTGCACGGTGC         CGCCGTCCGGC GAGAA GGC-GATGGCG         TTTTCCAGCAGGTTG  59 416
 JH290_14310 3258683 .. 3258698 +    -4  -3.33162   GCCCCCAGCGGCGCA              CCG-GAA TCA TTCACGG              TTGTGCGCTGGGCTG  48 124
 JH290_14315 3259566 .. 3259596 +  -7.5  -4.28994   GCCGATTCCGAGCAC      CGGCCGCGC--CCGC CTG GCGGATGCGCAGTCG      TTTTGATAGCTGCTC  76 298
         mfd 3263519 .. 3263544 +  -3.9  -3.14344   GGCCAGTGCTCGGAA         TCGGCATGTAC CCCC GTACACTCCGG          TTCCTCCGCGCCGTC  47 82
 JH290_14330 3263699 .. 3263733 +  -3.7  -4.11484   CGACGCACTGTGCAA    CACGCCGACGGTA-ATC AGC GATCTACC-TTGGCCTG    TTTTGGCGCATTGAA  63 126
 JH290_14340 NONE
 JH290_14345 3266967 .. 3266981 +  -5.6  -3.07816   CTCGTCTTCCCACGC               CGCCGT TCC ACGTCG               TTCCCTGACTCCAGG  49 56
 JH290_14350 NONE
 JH290_14355 NONE
 JH290_14360 NONE
 JH290_14365 NONE
 JH290_14370 3273377 .. 3273387 +  -3.2  -3.29144   AACCCACCGGCGCGC                 TCAC CTT GTGG                 TTGTACAGCCGCTCC  46 488
         nfi 3279338 .. 3279349 +  -5.8  -3.06261   GTCGCGCGTAGCCCA                CAGC CGCG GCTG                 TCTTGCGGCTTGGAC  49 140
 JH290_14400 3280690 .. 3280700 +  -2.4   -3.4252   GGCACGAAAGACGAC                 AGCG CTC CGCA                 TTGTCATCCATCGCC  47 236
 JH290_14405 3281203 .. 3281236 + -11.7  -2.53263   TAAACAACGCCCGCA     GATGGCATGACCGGC AGCA GTCGGTCATGCCACA      TCGCTTCGCACTACG  65 38
 JH290_14410 3281607 .. 3281624 +  -7.7  -3.28712   GTGCGCCCTCCAGCA             CGATCGC GAGC GTGATCG              TTGTGCCCGCGGCGC  56 240
 JH290_14425 NONE
 JH290_14430 3285331 .. 3285366 + -27.8  -3.25823   ATCGATAGATGCACA    CGCAACAGGGCGCGAT GCGA ATCGCGCCCTGTTGCG     TTGATGTGGACGCGG 100 53
 JH290_14440 3287716 .. 3287729 +  -4.5  -3.53012   TTCCCGTGGAAAGCA               GC-CGC TAA GCGCGC               TTTCCGCACGACGCA  51 18
 JH290_14445 3289012 .. 3289037 +  -2.6  -3.74693   GGACGCGTGCGGTGC         GGGATG-TTGC AGCAA GCGAGCATCTC         TTTACTGCGGTCGAC  52 81
 JH290_14490 3301318 .. 3301328 +  -2.4  -2.94322   GCCACCGCCTTGCTC                 CGGC ACC GCCA                 TCCTTTAGCTGGCCT  40 283
 JH290_14500 3302646 .. 3302662 +  -4.3  -2.74012   CGAGGATCTGAGCGC              CGTCAGC CCG GCCGATG              TAGTTGGGCTCATCC  42 83
 JH290_14525 3309529 .. 3309556 +  -6.2  -3.57561   CACGCTCTTGTCATC        GGCGCCGTTG AGCACCAG CACCGGCGTC         TTTGCGGAGTTGGCG  56 486
 JH290_14555 NONE
 JH290_14560 3318201 .. 3318220 +   -15  -4.67943   CGCGAGATGAAAAAA            CGCTGCGG TCTC CCGCAGCG             TTTTGTCTATTCGAA 100 182
 JH290_14590 NONE
 JH290_14595 3325029 .. 3325059 +  -6.8   -3.9122   CGGCCAACGCGATCT      GCTGGATGACGCC TATGTC GGCGGCA-CCGGC       TTGTTTACGCAGATC  65 497
 JH290_14605 NONE
 JH290_14625 3331156 .. 3331177 +  -6.5  -3.98113   AGCGCAACGCGCCAC           CGGCCGTCTG ACA CAT-CGGCCG           TTTCCTTCCTCCTTC  67 15
 JH290_14630 3332179 .. 3332191 +  -3.4  -3.63805   GAGCCCCAGCTTCAT                CGAA TGCGC TTCG                TTTGGCGTCTGCAAT  51 137
 JH290_14635 3333059 .. 3333076 + -12.7  -5.77853   ATCCGGTTTGATCGA             GACGGCC TTAG GGCCGTC              TTTTTTTTGCGCGTT 100 50
 JH290_14640 3333811 .. 3333824 +  -3.7  -2.78384   GGCCTATCGAGACCC               TGCGC ATGC GCGCC                TATGGTGGAGCCAGC  42 68
 JH290_14645 NONE
 JH290_14650 3334872 .. 3334884 +  -4.7  -2.83715   CGAGCACCCCAACCA                CCGCG GCA CGCAG                TGTCGTACTCATCCC  46 135
 JH290_14655 3335623 .. 3335646 + -13.8  -2.87344   CGTGAAACCAAAAGA          GCCCGGCGCA GCGA TGCACCGGGC           TCTCTCGCACCACTC  74 77
 JH290_14670 NONE
        sufB 3338898 .. 3338941 +  -5.9  -2.74523   CGGTGGGATGATCCG GC-GGC-TGCCCTGGCCTTCG GTAA TGGCGGCCGTGGCAAGCCTGC TGCTGTTGGCGCTGA  46 30
 JH290_14680 3339192 .. 3339215 +  -3.8  -3.47431   ATGAGTTGACTGTTG          GCTGCAGCG GATGTCA CGC-GCGGC          TTCGTATTTCCCTCT  51 40
        sufC NONE
        sufD NONE
 JH290_14695 NONE
 JH290_14700 3343227 .. 3343253 +    -5  -4.03234   GAAGCCGCTCGGCGA         GGCCGCGTTGTG AGC CACAACTGGACC         TTTGTCTGCGCCAGC  63 13
 JH290_14705 NONE
 JH290_14710 3346205 .. 3346219 +  -2.8  -2.98447   GCCGCTCGGCGGTGT               TGAACG CGA CCTTCA               GTTTCTGATCCATCA  43 3
 JH290_14715 3346941 .. 3346955 +  -2.7  -2.87564   GTATCACAACCTGCT               ACGGC AATGG GCCGA               TGTCTGAGCCGGTGC  40 4
 JH290_14720 NONE
 JH290_14725 NONE
 JH290_14730 3348901 .. 3348917 + -11.5  -2.52543   GTCGCCAAGCCCTGA              CCGTGCG CTG CGCGCGG              TCGCTTGCACGCGCT  62 26
 JH290_14735 3349869 .. 3349906 + -12.7  -3.01712   GTAATCGCCGCACGC   ACGCCACTGCATTGATC CGAT GACCAAGGCAGTGGCGC    TGTTGAGGCGGCACA  71 37
 JH290_14740 NONE
 JH290_14745 3352713 .. 3352728 +  -7.5  -3.09015   GCGCTTCACTTGTTA              GCCGC AGTGCA GCGGC               TTGCATGGATCTGCA  54 87
 JH290_14760 3355930 .. 3355963 + -13.8  -3.01712   GCGCACTGCGACGAT     CGGCCGGCCTGGCGC ACTGC GGGCC-GGCCGGCTG     TCTTGACCGCACGGC  75 45
 JH290_14765 3356364 .. 3356382 + -13.8  -3.70902   CATCCCTCCTTTCTG             CGGCGTGC GTT GCGCGCCG             TTTCACTGTGCACCA  84 43
 JH290_14770 3357430 .. 3357444 +  -4.2  -3.48269   CAACGCCAATGGAAC               CGCC GCATGAA GGCG               TTGATCTTTGCTGCC  51 16
 JH290_14775 3358482 .. 3358505 +  -2.2  -2.58544   GGCGGTGTACAGCAG          CGTGATCCCG GCAG CGCGCGCACG           GTTGTGGAAATCGAA  38 361
 JH290_14795 NONE
 JH290_14800 NONE
 JH290_14805 NONE
 JH290_14810 NONE
 JH290_14815 3365168 .. 3365186 +   -16  -5.76633   ATCGACCATCAAAAA             GCCCGGCA GCG TGCCGGGC             TTTTTTTGTGTCTGC 100 191
 JH290_14835 NONE
 JH290_14840 NONE
        lptC NONE
        lptA NONE
        lptB 3370670 .. 3370686 +  -3.6  -3.54424   GCGGCGCGTCTATCT              GGGGGA CACCT TCCGCC              TTTGAGCGCGTCGCC  51 4
 JH290_14860 NONE
        raiA 3372547 .. 3372575 +  -5.1  -3.43676   GTAACCACCACGCCC        GCGAGGTGCGCGA CAA TCCCGCATGACGC        TTCTCGCTTGATGCC  53 0
 JH290_14870 NONE
 JH290_14875 NONE
        rapZ 3375033 .. 3375051 +  -3.8   -3.8211   GCGGTTACTGGTGCG             CGCTTGAT GTG ATTGGGCG             TTGTTGTCGCTGAGC  56 190
 JH290_14885 NONE
 JH290_14890 NONE
        ptsP 3377874 .. 3377903 +  -4.1  -3.29704   CCACACCCACGCCCG       CAGCGCGCGGGCA CCGC TGCACCTGCACTG        TATGTTTCGTCACCG  48 47
        mgtE 3379613 .. 3379642 + -10.8  -3.15699   TGTTCGTGCCGGTGG      GCACG-TCG-CCGC AGCC GCGGCCGATCGTGC       TGTTCCTGCATGGCT  67 281
 JH290_14930 3387459 .. 3387472 +  -5.9  -2.82516   ACGCGTCAGTTGCCC               GCCTG GCCA CGGGC                TGTGGTCGTCGAGGA  48 167
 JH290_14945 3391576 .. 3391606 +  -8.9  -3.05384   GCCATCGATGGCGCA      CGC-GGACCACGGC CCCC GCCGTTGCCCAGCG       TTCCCTGACGAGAAG  57 471
 JH290_14960 3395070 .. 3395086 +  -9.3  -3.16191   CATTGCCGCTGGCAT              GTGCGGC CTT GCCGCCC              TTGCTCGCAATCTCG  59 316
 JH290_14970 3395927 .. 3395955 +  -6.6  -3.90744   CACGTCCCGTCCAGG        GTGCGTTGCTGC ATGTC GCGGCACCGCAG        TTATTTACGCACGGC  65 134
 JH290_14975 3396463 .. 3396483 +  -4.7  -3.55444   CAGCGGCGCTGGCGG           GCCG-CAC CGCTGC GTGACGGC            TTTACAGCGTAACGA  55 53
 JH290_15015 3408088 .. 3408103 +  -6.8   -3.1364   TGCTGCGCGCGCGTG              GGCCTGG CTG CC-GGCC              TTGCGTAATTGGATG  53 108
 JH290_15065 NONE
 JH290_15070 3416642 .. 3416668 + -11.5  -3.28001   CTGAGGTTTGCGCCG         GCCGGCTGGAG GTTTG CGCTAGCCGGC         TTAGGTTTGGCGCTG  69 37
 JH290_15075 NONE
 JH290_15080 3418909 .. 3418945 +  -9.3  -2.79796   GCTGTCGATCGTGCA    CGACGTCGGTCTGGGCC GAT GGTGGCGACCGATGTCG    TGTAATGGCGTGCGC  57 65
        mdtD 3421312 .. 3421348 +   -10  -3.07935   ATGGCAGTTGATTGG    CTGCCGCGGCATGCAC GTGCG GTGCTCGTCACGGCAG    TTACGTGACTGCAGT  62 74
 JH290_15105 NONE
 JH290_15110 NONE
 JH290_15115 3434839 .. 3434865 +  -8.7  -5.76633   GACGCGGCCACTGAA         CGGCGGACT ACCTCGTCG GGTCCGCCG         TTTTTTTATGTCTCA 100 61
 JH290_15125 3436696 .. 3436726 +  -7.5  -4.28994   GCCGATTCCGAGCAC      CGGCCGCGC--CCGC CTG GCGGCTGCGCAGTCG      TTTTGATCGCTGCTC  76 139
 JH290_15135 3438670 .. 3438707 +    -9  -2.87132   ACGCGGCCGACGAAC   CGCAGGCAGC-GGCCGG CGGCA CGGGCCTGCTGCCAACG   TGTCTGCACCAGCGC  56 524
 JH290_15155 3443062 .. 3443079 +  -2.6  -3.25088   GGCCGGCGCACCGAA             GCCGCT ATAATC ACCGGC              TTCCTCAGTTTCCGC  43 82
 JH290_15160 3444738 .. 3444771 +  -3.8  -3.54459   TGACCGCCACTTGAA    TCGCCACAAGCCAGCG CCAC CGCTGGC--GATGCGA     TTTGCGCGCGGTTAC  53 38
 JH290_15165 NONE
 JH290_15170 3447477 .. 3447509 + -13.3  -3.05715   TCAGCTGGCGATGTA      GCGCTGCAACTGGTC TAT GTCCTGTTGCTGCGC      TTCGATCACCGCCTT  71 50
 JH290_15190 3450715 .. 3450726 +  -2.2  -2.62263   TTAACACCTGCCTCT                GGGT CTGA ACTC                 TGGTATGCGACACCT  38 132
 JH290_15195 3451627 .. 3451651 +   -15   -4.3208   AAAAGAATTTAGCAA          CGCCACCGGT CACCA GCCGGTGGCG          TTTTGCGTTGTGGCC 100 55
 JH290_15200 3454772 .. 3454789 + -14.1  -4.34263   CAAGAGGTAAAAAAA             CGGCCCC GAAA GGGGCCG              TTTCTATTGTTACAA 100 54
 JH290_15210 NONE
 JH290_15215 3459018 .. 3459043 + -19.1  -4.07535   AACGAGGAACAAGCA         CAACGGCGAGC TCAG GCTCGCCGTTG          TTGTTTCTGGCGCTT 100 48
 JH290_15230 3463205 .. 3463220 + -11.8   -5.5074   ACGCATAGATCGAAA              GGCGGC TTCG GCCGCC               TTTTTTGTTGCCTTG 100 56
 JH290_15245 3466104 .. 3466124 +  -7.5  -3.02144   TCGGGATGCAGCAGG            CGGCGCG ATCAGTG CGCGTCG            TCTTCCAGCAGCTCG  54 235
 JH290_15290 NONE
 JH290_15295 3474505 .. 3474524 + -11.4  -3.35798   ACGTTTCTATAGGAG            CGCCCTTG GGCG CGAGGGCG             TTATCGGTAGAGCCT  69 92
 JH290_15305 3479626 .. 3479657 + -20.2  -5.75478   TTCTGATGGTGTGAC      GGCGCGCCACCG ACCCTCCA CGGTGGCGCGCC       TTTTTTTCTGTCGTT 100 35
 JH290_15310 3481503 .. 3481515 +  -5.5  -3.21099   CCTCTTCCACTCCCT                GACGG ATC CTGTC                TTCATGATCAAGCGA  51 24
 JH290_15315 3482764 .. 3482774 +  -2.4  -3.82218   CCAGTCCCTGCGCCA                 TCCG GCA CGGC                 TTTGCTACTGTGCGT  54 209
 JH290_15320 NONE
 JH290_15325 3488062 .. 3488076 +  -6.4  -3.14132   GCGGCGCGTGCACCG               CGGTGA ACA TCATCG               TTGGTGCAACGCGCC  53 66
 JH290_15330 NONE
 JH290_15335 3492522 .. 3492538 +  -4.3  -3.44146   CATCAGCGCAAACCG              CAGCTGC TGC GCAGTAG              TTGATTGTCCGAAGC  51 5
 JH290_15340 3495062 .. 3495108 +  -7.1  -2.71263   GCCACGCGTTGGCGG CCACACCTGGTGCGCTGCGCTC GGAT GATCGCAGCGCAAC-GGCGCGC TCGTTCAAGCCGCTT  49 64
 JH290_15345 3497066 .. 3497095 +  -5.5  -3.19371   GCGCGGCCAAGAAAC       CACCGCGCTCATC ATCA GACGGGCGCAGCG        TTCGCTTCGATCGGT  51 41
 JH290_15365 3506042 .. 3506056 +  -4.2  -3.54129   ATCGCCATCTGGATC               GCGG GCCCCAA CCGC               TTTAGGGAAGCTCTG  53 496
 JH290_15375 NONE
 JH290_15380 3507598 .. 3507632 +  -2.9  -4.37886   CGTTTGCGGTCAACG    CACCGAT-CAGGCGCTG TTG CAGCCCCTGCATCC-TG    TTTTCTGCGCGCTGG  66 264
 JH290_15395 NONE
 JH290_15400 NONE
 JH290_15405 NONE
 JH290_15410 NONE
 JH290_15415 NONE
 JH290_15420 NONE
 JH290_15425 3520867 .. 3520888 + -12.3  -2.57721   GGCAGTGGCGCATTC           CCGTCGTTC CATC GAGCGACGG            TCGGTTGGTGAGTTC  65 392
 JH290_15430 3521402 .. 3521414 +  -7.7  -2.81464   AACAGGGTGCCGGTC                GCATG CGC CATGC                TCTGGTAGATCGTAC  52 296
 JH290_15440 3523218 .. 3523230 +  -3.3  -3.28712   ATGATTAATTGCTCA                GACGC AAC GCTTC                TTGTCACCGAGGCAC  46 253
 JH290_15460 NONE
 JH290_15465 3527938 .. 3527966 +    -6  -4.18494   TTGCGCCGACACGCC       CGCTGCACTGAAG ACGT TTTCAG-GCTGCG        TTTTCACTCGAAGTC  67 254
 JH290_15480 NONE
 JH290_15485 3532610 .. 3532624 +  -2.8  -3.03159   GTCAGCCTGGATGCG               GTGC AATGAGC GCAC               TGTTCGAGCAGTTCC  43 17
 JH290_15490 3534864 .. 3534874 +  -8.2  -2.82623   GGCGCTGCAACACGC                 GCGC ACT GCGC                 TGATTCTCGGGCACG  54 397
        gshB 3549021 .. 3549053 +    -6  -3.05596   GTTCGATGCGATCGA      GGCCGGCACCGCGC AATGA GCACGGCCGCGGCC      TTGCCTGCACCGATG  49 7
 JH290_15540 3549996 .. 3550016 +   -14  -3.15999   ATGAGCGCCCACATT            GCGCGCTG GAGTG CAGCGCGC            TTCGATGTGTGGCGA  76 110
 JH290_15575 3559905 .. 3559920 +  -2.4   -3.8647   TGAGTGAGGCGAGGT              GGGCGT GCAT GCGCCG               TTTGGTGTACTGCAT  54 34
        pqqA 3564155 .. 3564178 +  -7.4  -3.35996   TCGATGCATGACCGG          CTGTTGCCGG CAGA CAGGTAACAG           TTCTCCATGCGCATC  58 61
        pqqB NONE
        pqqC NONE
        pqqD NONE
        pqqE 3567252 .. 3567275 +  -2.2  -2.99947   CCGCTGGCGGCACGC          GGCCGAGCGT CTAC ACTAGCGGCC           TCTCTCTCCGGGTTG  41 42
 JH290_15615 3567941 .. 3567957 +  -5.1  -2.78463   GGCCTGAAACTCATG              CACGC CGCAGAT GCGTG              TGTGCTGCAGCGGGT  44 158
 JH290_15620 NONE
 JH290_15625 3570915 .. 3570925 +  -2.4  -2.78816   CTGGTATCTGCAACA                 CCAC ACC GAGG                 TGTCGTAAGCGCTCC  39 7
 JH290_15630 3573688 .. 3573728 + -16.8  -3.15699   TTGACCTACCGCATG  CCAGGGCGCCGGGAGC AATGCAGCA GCCCCCGGCGCCGTGG  TGTTAGTGGATCAGT  86 37
 JH290_15640 3578690 .. 3578706 +  -2.1  -3.88583   GCAGTAAACCCTTCA              CGCGTAG CCT CCACGGG              TTTGTCCAAGGTTTC  54 34
        recQ 3580955 .. 3580980 +  -5.4  -2.63596   GCTAGTTTCAACGGA         GCGATCTGGCG CGCGC CGCCAG-TCCC         TCCTGTAGAGTCCAA  43 121
 JH290_15650 3581508 .. 3581519 +  -7.2  -2.90615   GGCCTGCATTGACAA                GGGG TTCA CCCC                 TGCTTTGCGGAAAAT  53 52
 JH290_15655 3582002 .. 3582038 +    -5  -4.25104   CGGCCGAGACCGCTG    TCAGGAACGCCCTGAC AGCCC GTCAGTTCGCCCCTGA    TTTTCGTGACGCACA  68 63
 JH290_15665 3584796 .. 3584809 +  -3.1  -5.08824   TTCGTATGTGCCAGC               CGCAGT TGA AC-GCG               TTTTTTCGGTCACGC  78 310
 JH290_15670 3585450 .. 3585468 +  -2.2  -3.59979   GCGCAGAGATGATGG             CTGCGCGC GTT GCATGCTG             TTTCCCATCGCGCCC  49 29
 JH290_15685 3588213 .. 3588224 +  -7.2  -3.01712   ACCACGCCGGCGTAT                CGCC CCAA GGCG                 TCTTCCAGCACCACC  51 387
 JH290_15695 3591564 .. 3591601 + -20.7  -4.13767   GATCCTGCACAAGGA   CTCCCCGGAACGCCGCGA TCT TCG-GGCGTTCCGGAGAG   TTTTGCCGTGCAGGG 100 43
 JH290_15710 NONE
 JH290_15715 3594468 .. 3594482 + -12.8   -4.7497   TACAGACAAACAAAA               GGCGCC AAA GGCGCC               TTTTTGCTGACTGGA 100 304
 JH290_15815 3612971 .. 3613025 + -18.6  -3.53012   TGCGCCTGCGCATTC CAGCGCGGGT-TGGCGTCGCTGCGG CTTGAT CCGCAGCGAGGCCGGAACGGCGCTG TTTCAACGCAGACGA  95 74
 JH290_15820 3613295 .. 3613312 +  -8.3  -2.56596   ACTCCACCCGGAACA             GGCGCCC GTCC GGGCGGC              TCAGTTCGTAGACCA  52 95
 JH290_15835 NONE
        ggpS 3618697 .. 3618727 + -23.4  -3.01791   ATACGCGCAGTCACA       CAGCAACGCCCGGG CTC TCCGGGCGTTGCTG       TGTTGAGACAAGCGT 100 65
 JH290_15845 3621260 .. 3621292 + -13.4  -3.01712   ACTGCACTGGAATAG      ATGCCGGGCGCG TCGTGCGTT CGCGCCCGGCAG      TGTTCCGGACAGGCG  75 50
 JH290_15850 3623779 .. 3623805 +  -4.3  -4.09822   ACCACCCCGTCGCGA        TCGGC-GCGCTC GGCT GAGCGCTGCGGC         TTTCTGTCGTGCGTT  61 9
        ampR 3627243 .. 3627276 +  -9.6  -3.48269   CGCATAGGTGTAGGT    GTGCC-GCA-GCGCGG CCTG CTGCGCATGCAGGCGC     TTGATCTTTCGTGGC  63 297
 JH290_15885 3632053 .. 3632084 + -18.1  -4.08767   CAGTGTCACCGCAAT      C-CACACGCCCCGG CCTGC CCGGGGCGTGTGCG      TTTTGGGCCGCTGGC 100 42
 JH290_15890 3632712 .. 3632732 +  -4.7  -3.73224   CGCACCATTGCAGGT            GTGGTGC AAGCAAC GCATCAC            TTTGGTGCACGATGA  58 92
 JH290_15895 3635366 .. 3635410 + -15.6  -2.76189   CGGTGCTCCATCGCG GCATCCACCCCGGCGCCTCG GGCAA CGACGCGCCGGGGTGACTCC TCATTCGGTGCATTG  78 83
 JH290_15900 3638056 .. 3638084 + -26.1  -5.75342   CACTGCGGCGAGATC        CGGGCCATCGCGG TAT CCGCGATGGCCCG        TTTTTTTTGCCCGCG 100 43
 JH290_15910 3642539 .. 3642556 +  -3.3  -4.07568   TCGCCGATCAATCCA             CCGGCTT GCTG GAGCCGC              TTTTCGAAACCGGCG  59 455
 JH290_15935 3646271 .. 3646284 +  -2.3  -3.27525   CCTGCAGGAGCACGC               CGTAG ATGC CGACG                TTCCGTTTCCACGCC  45 21
 JH290_15940 3648555 .. 3648569 +  -5.6  -2.62184   CAGCCCGCTCTACAC               CGGTTG ACC CCACCG               TCCTGTCGAACGAGA  46 175
 JH290_15945 NONE
 JH290_15950 NONE
 JH290_15955 NONE
 JH290_15960 NONE
 JH290_15965 3655835 .. 3655893 +  -4.3  -3.01712   GGTAGTGCAGTGGTG CGTCGCGC-AGTGCGTGGCCGCTGCCGGG CAG CCAGGCGGCGAGCAGGCGGTCGAGCG-CG TCTTCCAGCCCGGCA  45 42
 JH290_16055 3675401 .. 3675411 +  -2.4  -3.37522   ACGCGCCGCTCACGC                 CCGC CTA GCCG                 TTGATTGCCTAGCCT  45 18
 JH290_16060 3676233 .. 3676291 + -14.6  -3.24232   GGCGTACTGAAGCAG GCCAGCACGCCAC--CGGTCGCCGCGCGC CAGC GCGTGCTGCGACCGATGTGGCC-GATGGC TGTGTTTAAGCACAG  80 99
 JH290_16090 3684742 .. 3684769 +  -9.2  -3.57144   GGGTACGGAGCGAAG        CCCTCGTGGCGTT CCA AACGC-ACGAGGC        TTTGCCCGTACCCGC  68 301
        otsB NONE
 JH290_16100 NONE
        otsA 3689315 .. 3689333 + -12.4  -4.88163   TGCAAGTGCAGAGCT             TTCGCGCC TGC GGCGCGAG             TTTCTTTTGTCTTGG 100 203
 JH290_16110 3692508 .. 3692529 + -17.3  -5.64274   TGCAGTGACGTTGAA           CCGGCCGTC GCAA GACGGCCGG            TTTTTTTGTGCGTGC 100 53
 JH290_16115 3695305 .. 3695316 +  -3.6   -3.0497   CGTGACCAGCTGCGG                TGCG TGCA CGCG                 TGTTCCAACTGGTAT  43 457
 JH290_16140 3699274 .. 3699289 + -11.8   -5.4505   GGCGATGAGATGAAA              GGGGCC GCAA GGCCCC               TTTTTTATTGCCGCA 100 51
 JH290_16145 3701193 .. 3701206 +  -4.5  -3.40709   AGGATCACGCCGCGG               CTGCG CGAC TGCAG                GTTTTCTTCGGTGAT  51 521
 JH290_16175 3707054 .. 3707065 +  -7.2  -3.02511   GCATCCTGCTACAGG                GCCC GAAT GGGC                 TATTCGGCAAGTAGG  54 0
 JH290_16180 NONE
 JH290_16185 NONE
 JH290_16190 3710164 .. 3710174 +  -5.4  -3.25823   AAACCAATCAATCCT                 TCGT CAC ACGA                 TTGATCTCGGCCAGG  50 216
 JH290_16210 NONE
 JH290_16215 NONE
 JH290_16220 3716386 .. 3716403 +    -4  -3.76182   TGCATAGCGGTACCA             CCTCCG TCAAAC CGGTGG              GTTTTTTGTGCCTGC  56 299
 JH290_16225 NONE
 JH290_16230 NONE
 JH290_16235 3718278 .. 3718296 +  -4.5  -3.35522   CAGCACGCGTACCCG             CACCTGG CCATC CTGGGTG             TATTTGACGGCGTTA  51 405
        glgX 3724215 .. 3724243 + -19.7  -5.28778   AGCATGCGTTAGCGA        GCCCGCCTTTCGT TGA ATGAAAGGCGGGC        TTTTTTGTGGCTACT 100 48
 JH290_16285 3727939 .. 3727954 +    -4  -2.70232   ACGCTTCACTGAACC              CTACACG GGG CGTG-AG              TGATGTAATCTTGAC  42 29
 JH290_16290 3728259 .. 3728273 +  -9.2  -2.62184   TAACCGATGATTTTT               GGGCCG ATG TGGCCC               TACTGTGAGGACAAC  56 3
 JH290_16295 3728701 .. 3728721 + -18.3  -4.23781   GAACTACATCAAGAC            GAGCCCCGC ACT GCGGGGCTC            TTTGGTTTTAGTGGA 100 69
 JH290_16305 3731325 .. 3731339 +  -2.7  -4.64766   GGGGATCGATGTCGG               GCTGC CCCAC GCCGC               TTTTTCCGATCTGCC  71 505
 JH290_16350 3740945 .. 3740955 +  -8.2  -3.29144   GCATATTTTTACTCA                 GCGC TAT GCGC                 TTGTCAAGCAACTGG  60 492
 JH290_16360 3743392 .. 3743406 +  -2.8  -3.63744   GCCCAGGCGGTAGTT               CCATCA TCC TGATAG               TGTTTTACGAAAGAC  53 375
 JH290_16370 3743857 .. 3743877 +  -2.5  -3.61715   TTCATGTCGCCGCGG            GCGCGAA CATAAGC TTCGCCC            TTCTTGAGGGAGGTC  48 101
 JH290_16400 NONE
 JH290_16405 NONE
 JH290_16410 3750912 .. 3750928 +  -3.7  -2.72626   TAAAACGCACGGTGG              TCGAC AAGGCGC GTCGA              ATTCTGTGGGTGTTA  42 63
 JH290_16415 NONE
 JH290_16420 3753261 .. 3753279 +  -5.2  -3.61398   CGACAAACTGGACAA             TGCTGCAT AAC GTGCCGCA             TTATTCCCCAGGCGA  55 130
        thiS NONE
 JH290_16445 3758445 .. 3758458 +  -3.1  -4.75372   GGGACAGGGCGTTGT               TC-GCC GAT GGCTGA               TTTTTCATGACTGAT  73 147
        trmB NONE
 JH290_16455 3761190 .. 3761212 + -15.6  -3.57731   GCTGAGCACGCTGTT           GCAGCAGCGC GAA GCGTTGCTGC           TTCTGTGCTGATTGA  86 36
 JH290_16465 3762561 .. 3762580 +  -5.6  -4.19746   TTGAGCCGCACGTTG            CAGCGCGCC TGA GGCGC-CAG            TTGTTTTCGCCTGCA  67 37
 JH290_16470 NONE
        mscL 3763908 .. 3763941 + -20.3  -3.50853   TTTTCGCACGCAGAC     GGGGGACCTCGCGCT GATA AGCTCGGGGTCCCCC      TTGTCGTTGGAGCCG 100 85
 JH290_16480 NONE
 JH290_16485 3766538 .. 3766571 +  -8.9  -4.09685   CATCACCCAACAGCA     CAACGCCCTGCGCATC GGC GATGCG-ATCGCGTTG     TTTTAGGCCCTGACC  73 81
 JH290_16510 3779391 .. 3779424 + -14.5  -2.90496   CACGTGCACGCTGGC     GCGCGCCGGCATTGC GGCC GCATTGCTGTCGCGC      TGATTTCGGCCGAGA  77 87
 JH290_16565 3796873 .. 3796883 +  -4.6  -3.04144   TTGCCTGGACGCTGC                 GCGC GTT GTGC                 TGTTGCCAATCCCGA  47 101
        cysI NONE
 JH290_16575 3799638 .. 3799648 +  -4.6  -3.13403   GCAAAAGCAATTGAT                 TGGC GGT GCCG                 TATTGCTGGCCCAGG  47 314
 JH290_16595 3805267 .. 3805285 +  -8.8  -3.37259   TCACCGACAGCGAGG             CCGTGCTG ATG CAGTGCGG             TGTTTGCAGATCATT  60 350
        cobA NONE
        cysK 3809175 .. 3809220 + -18.4  -2.81966   AGCGTGACGTCAGCG TTTCTTCCCAAAGGCCGCGC CCGCCA GCGCGGCCTTTGGCATGAAG TGTCCTGCGATTTGC  86 49
 JH290_16620 3809798 .. 3809816 +  -7.3  -3.57263   TACAGCGATTATTGC             GCCCGCG TACGC CGCTGGC             TTTGAGCCTAGCGGT  62 2
 JH290_16625 3810899 .. 3810922 + -18.2   -3.6053   GCGTGATGGTTTTCA          GACAGGCGCC ACAG GGCGCCTGTC           TTGCTTTGTGCACGG 100 56
 JH290_16670 3823652 .. 3823664 +  -4.8  -3.86015   CCGGCGCAGGCAGCG                CGCA TGCCC TGCG                TTTCTGCACCAGATA  60 112
 JH290_16675 3824418 .. 3824428 +  -8.2  -3.48772   TCTGAGGACGGCGAC                 GCGC GTG GCGC                 TTCTCTGGCACACTT  63 36
 JH290_16680 3825165 .. 3825188 +    -6  -2.73364   ATCAAAACGACTGCG          CA-GCCGCC GGGCAGG GGCGGCCTG          TGCTTGGGATCGGCA  46 49
 JH290_16685 3825365 .. 3825387 +  -8.5  -3.95324   CGACGCGTACAATTC          CGGGGATGAA GACC TTC-TCCCCG           TTGTTGTTGACGCTC  71 113
 JH290_16690 NONE
 JH290_16695 3827011 .. 3827037 +  -8.6  -3.90922   CTGGCGCGGCTGAGT         GCAGTGCGTGCG GCC TGCGCGCGATGC         TTCTTTCGGGCCGAT  71 28
        modA 3828061 .. 3828071 +  -2.4  -3.01712   AAGGACTGAGGCAGT                 CCGC GTG GCGA                 TGTTCACCCCGGAAG  41 32
        modB NONE
 JH290_16710 3829379 .. 3829395 +  -3.5  -3.07816   TGGACTAGCGCAGCC              AACGCGC CAC GCGCGCA              TTGGGTAGGTCACGC  43 33
 JH290_16715 3830475 .. 3830500 +  -5.3  -3.03771   CCGCCAGCATGCGCT         GATCCACCGAG GCTT CGCGTTGGGTC          TGTTCGGCGATCTGC  47 523
 JH290_16735 3834425 .. 3834437 +  -3.3  -3.90744   AAGCGCGACCGGGAT                GATGG CGA CCACC                TTCTTTCCGGCGCCG  56 127
 JH290_16740 3835732 .. 3835746 +    -7  -3.34233   CCCGCGTGAACGGGC               CGGGCG CCC CTCCCG               TTCTCCACCTTGTGA  55 122
 JH290_16745 3838494 .. 3838524 + -12.7  -3.86015   TATTGACCGAGCGAC       GACGGGAAGAC GCAGCGCCG GTCTTCCCGTC       TTTGTGCGGGCCGTG  83 35
 JH290_16750 NONE
 JH290_16755 3840541 .. 3840577 + -17.3  -3.15574   GATCAGTGCAGTGAA    TTGCATCGCTGCTGCGC ACT GTGCCGCAGCGATGCAC    TATTCCTACGATTCA  89 65
 JH290_16765 3842820 .. 3842846 + -19.6  -2.71011   CAGCGCACAAAAAAA         CACAGGCATCTC TGC GAGATGCCTGTG         TGATTGCCAAGCCAT  90 246
 JH290_16775 3846942 .. 3846957 + -11.8  -5.08824   CCTTCCAAGAAAAAA              GCCGGC TTTC GCCGGC               TTTTTTCAATCAACA 100 293
 JH290_16845 3866114 .. 3866138 + -17.2  -5.40072   ACGGTGTGATGCCAG          CAGCGGAGCC CAGGT GGCTCCGCTG          TTTTTTTGGGCAAGC 100 51
 JH290_16850 3867251 .. 3867269 + -17.4  -3.72576   GCCCGCAGCGCAAAA             CGCCCCGC AAT GCGGGGCG             TTTGGTCAAACAACC 100 101
 JH290_16910 NONE
 JH290_16915 3882686 .. 3882707 +  -5.7  -4.19238   GATGGCTGCAGCCAA           CTGCGCGAG CACG CCCGTGCGG            TTTTCCACTTCCACC  69 257
         rph NONE
 JH290_16945 NONE
        rdgB NONE
        hemW 3890060 .. 3890075 +  -2.4  -2.80344   GAAACGAGCCCTGCA              CGGATG TCCA CGCCCG               CTTCTTCCCTGCCGC  39 90
 JH290_16960 NONE
 JH290_16965 3892995 .. 3893011 +    -3  -3.17075   CAGCCTCACAACGAT             TGCGGCA AAAT TGC-GCA              TTGCCTTGCAACGCC  44 184
        pepQ NONE
 JH290_16975 3895060 .. 3895073 +  -8.1  -2.87132   CAATCTCGTCGGCGC               TGCGC GCAA GCGCA                TCTGTGAGCACGCGG  52 294
 JH290_16990 NONE
 JH290_16995 3897654 .. 3897666 +  -4.8  -2.78935   ATACACCGCGTTGAA                GTGC AATAC GCAC                TGTCATCGCAAATAT  44 27
        ssrS 3897943 .. 3897968 + -19.1  -4.93318   GAATGCAATTTTTCT         GAAACGGCGCC CTAG GGCGCCGTTTC          TTTTTGTGCGTTGTC 100 35
 JH290_17005 NONE
 JH290_17010 3899311 .. 3899328 +  -2.6  -3.09492   TGAGATTTGCAAATC             CCGGCT CAGCCC AGCCGC              TCTTGCGATTCCCCA  41 63
        rpiA 3900141 .. 3900159 +  -3.1  -4.29981   GCGCTCCCCTCCAGC             GGTGCAT CGCCC ATGCGTC             TTTTCCATCTGTTTG  64 144
 JH290_17020 3900605 .. 3900619 +  -5.6  -2.85351   CAAGCTGAAGTGATT               CACAGC GAT GCGGTG               TCTCCTGTCAGGAAG  48 28
 JH290_17025 3901698 .. 3901719 +  -4.3   -2.6563   CTGTCGGGCACGTCT           TCCCAGCGG GTGC CCGGTGCGA            TGCCTTCTTCAGGAA  42 199
 JH290_17035 3902524 .. 3902547 +  -9.6  -2.84732   CGCAACGAGTGTGAA          GCGCTGAGAT TTTT ATCTCAGCGG           TGTCATCCGTTTCAA  58 41
        hemL 3908217 .. 3908253 + -11.6  -3.53012   CGCCGCTGCTTCATC   GTGTTGCGCGGCGTGTC GGTT GGCACGCGGC-CAACGC    TTTGCCACGGCCGCC  74 194
 JH290_17050 3911343 .. 3911358 +  -3.2  -3.30124   CTGGAAATCGTCGCT              CTTGGT CAGC ACCCAG               TTGTGCCCCATCACC  46 326
 JH290_17085 3918978 .. 3919007 +  -4.9  -4.13767   GCAAACCGATCGCAG       CGGAAGCGGC-CAG TCA TTGCGCCGCGTCGG       TTTTGACATCAGCCG  65 167
 JH290_17095 3921702 .. 3921750 + -10.2  -3.61517   GCCGGCCGGCGGCAG CGAGCTGTTGCTCTCCAGCAAC ATCTG GTCGCTGCGGCTCAACGGCTCG TTGTTGCGCACGCGT  67 333
 JH290_17115 3927234 .. 3927247 +  -2.4  -3.55084   ATCCGCGTCGCGCTC               TTGG TGACAC CCAA                TGTTTACTGTTGAGC  49 216
 JH290_17140 3932805 .. 3932835 +  -5.3  -4.09685   AGATCTACGAAATCC       GTTTTGCACCCTC TTAGC GGGGGTGCTGCAC       TTTTCAGACCTGAGC  63 87
 JH290_17155 3937246 .. 3937262 +  -2.9  -3.86346   CCCAGAGCGATGCGT              GGCTC CAGGCCC GGGCC              TTTGTCGGCGGGTGA  56 76
         ppa 3938884 .. 3938917 + -11.9  -3.53224   CGTGATGCCGGTGAC     CGCTGTCGGCAGAT TGGGTAC AT-TGCCGACAGCG     TTTGGCCGGCGCCTA  74 97
 JH290_17170 3940102 .. 3940123 + -13.7  -5.10461   GTGATGCAGGCTGAA           GGGCGCGAC GTAA GTTGCGCCC            TTTTTCTTGCATACG 100 56
 JH290_17195 3952496 .. 3952515 +  -9.2  -3.33696   GCGGTGCCGATGCGC            CCGGCGGT GGCC ACCGCCAG             TTCCTTGACCCGCGC  61 504
        ilvC NONE
 JH290_17215 NONE
 JH290_17220 NONE
 JH290_17225 NONE
 JH290_17230 3962105 .. 3962129 + -14.3  -4.40173   ATGACGTTAGTAAAA          CGGCCAGCG AGTCATA CGCTGGCCG          TTTTGCGTTTGTGCT 100 72
 JH290_17255 3968399 .. 3968435 +  -6.6  -3.61398   GCACGGTGGCCTCGT   CTGCGGCAATCGCAATGG TGC CCAG-GCG-TTGGCGCAG   TTGTTCGAACAAGGC  56 188
 JH290_17265 3972134 .. 3972155 +  -7.9  -2.90496   GGCCTGCCCTTTGGT           CGCGGTGAC TTCC GGCACTGCG            TGGTTTGGCGGCGCC  53 44
 JH290_17270 NONE
 JH290_17275 3974317 .. 3974333 + -15.1  -4.84527   CGCAGTGAATGAAGA              GGCGGGC ATG GCCCGCC              TTTTTCATGTCTGCA 100 48
 JH290_17285 3977407 .. 3977417 +  -6.8  -3.13343   AGGGCGCTGGCGCTG                 GCAC TAC GTGC                 TTGAGTGCTTGAGGT  53 40
 JH290_17305 3984331 .. 3984341 +  -3.2  -4.13767   CGCACACAAGCAGGA                 GTTG CAT CAGC                 TTTTCGCATCGGCAA  61 369
 JH290_17320 3989965 .. 3989996 + -21.6  -2.69799   TCATCCCGCATCACC      CTGCGGCCGCCTCC TTCG GGACGCGGCCGCAG       TCGTGTGTGCGGTGG 100 59
 JH290_17325 NONE
 JH290_17330 3993319 .. 3993334 +  -3.2  -4.59773   TGCCGCCTGGGTGCG              GCTGTA GCAG TCCAGC               TTTTTCAGGATGGCG  71 290
 JH290_17355 3998913 .. 3998926 +  -3.8  -3.34043   TGCGCGCCCGGCGCA               GTGG CGCGCT CCAC                TTATCCCCTGCTGCA  48 200
 JH290_17360 4000342 .. 4000352 +  -2.4  -3.04263   TCGCAAAAGCGAACG                 CCGG TGC CCGC                 TGTTGCGAATCCCAT  41 76
        phbB 4001246 .. 4001279 +  -5.2  -3.54459   GTGCGTATAGCCGCC     CG-TGCTGCGGCCGC CTCCC GCGCATGCAGCAACG     TTTGGCACCCCTTCC  55 122
 JH290_17370 4002620 .. 4002655 +  -6.3  -5.75342   GAGCGTGCGTCCTGG   ACGGATTGCACGCAATC ACTT GAT-GC-TGCAATCCGC    TTTTTTTTAGCGGCA 100 97
 JH290_17380 4006747 .. 4006763 + -15.1  -3.58343   TTCTAAAGGACCCGC              GCCGGGC CCT GCCCGGC              TTTCCCCATGATCGC  86 35
 JH290_17385 4008860 .. 4008879 + -10.7  -4.91511   ATCGGCAATAAAAAA            GCACGCC GGTCAG GGCGTGC             TTTTTCTCATCGCAT 100 201
 JH290_17405 4013527 .. 4013566 +  -5.4  -2.88544   TACCGCTCAAGTCGC  GCAGCGTGGCGTGATGGC GGCG GCCGGCCTGCCGCGGCGC   TATCTGGCGCTGGGC  46 12
 JH290_17410 NONE
 JH290_17415 4015218 .. 4015231 +  -8.1  -3.53012   CACGCCTCGCGGTGT               TCCGC GAGA GCGGA                TTTACAACGCAGCCG  63 351
        grxD 4017056 .. 4017078 +   -17   -5.1675   GCCGTAACACCCAAA           CGGGCGCTCC CAT GGAGCGTCCG           TTTTTTCATGCCTCC 100 66
 JH290_17430 4018163 .. 4018177 +   -10  -3.64703   CGCACGTATCGATAC               TGCGTG CGC CACGCA               TTTGGCTGCGCGCAG  70 260
 JH290_17440 4020401 .. 4020420 +  -9.3  -3.01712   TGCTGGGCCAGGAGG            TGGCACG ATGAGC CGTGCCA             TGTTCCGCCGCCCGC  60 15
 JH290_17445 NONE
 JH290_17450 NONE
 JH290_17455 NONE
 JH290_17460 NONE
 JH290_17465 4024183 .. 4024195 + -10.5  -3.27298   CTAGCATCGCGCATC                GGCGC ACC GCGCC                TTGCTCGTTACGGAG  66 197
 JH290_17480 4028415 .. 4028427 +  -9.1  -2.79501   CCGCCGCTGGCATAA                GGTGC CCG GCACC                TGTCATCCGAGTGTG  57 91
 JH290_17485 4028953 .. 4028964 +  -5.8  -3.66178   GCCAGTTGCCCACCG                TGGC CAGC GCCA                 TTTCAGATTCACCGC  57 192
 JH290_17505 4032519 .. 4032533 +  -5.6   -4.4267   TGACGATTGCTTGCT               GCGTCT GTT AGCCGC               TTTTAGCTTTTCAGC  74 10
 JH290_17535 4038340 .. 4038356 +  -4.4  -3.78208   CACGGTAGAAATGGT             TGGGCGC GTCT GC-CCCA              TGTTTTGATCTCGCT  56 450
 JH290_17545 4040593 .. 4040605 +  -4.7  -2.91264   GCTACATGCTGCTGC                CGAGC GTC GCGCG                TCTGTGAGTGAACCG  46 6
 JH290_17550 4042531 .. 4042550 + -10.6  -2.75268   ACAGGCGATTCCACG            GCCCGGCG TCGG CGCCGCGC             ATTTCCAGGTACTTC  60 451
 JH290_17565 4045607 .. 4045632 + -16.9  -2.90813   GGCCCACCCGCTTCG         CAACGCCGGTC TTCG GGCCGGCGTTG          TCGTTTCACCGCGTC  87 56
 JH290_17570 NONE
 JH290_17575 NONE
 JH290_17580 4048092 .. 4048115 + -10.3  -5.26875   GACGTGCTCTAGACA          CCGCTTGTG GCATAA CACAGGCGG           TTTTTTCGTTGGAGC 100 90
        betT 4050152 .. 4050165 +  -2.3  -3.96327   CATCGCTGCGGCGAG               CGTCC CACA GGAGG                TTTGTCATGCCACGT  54 46
        betB NONE
        betA 4053583 .. 4053605 +  -4.8  -5.00616   GGCAGGCGGCGAAGA           CATCGCATGT AGC ACGTGAGGTG           TTTTTTGAAACCCAC  83 203
 JH290_17605 4059268 .. 4059320 +  -8.2  -2.62983   AGGACTGACGCGGCC CGCGCACTGCCGCGCGCGCTTGCCG TGCG TGGC-AGTGCGCGGGGCATCGGGCA TCATGTGCGCATGAA  53 33
 JH290_17610 4060723 .. 4060759 +  -2.2  -3.64487   GAGGCTCAGCATGAA    GGAGCGGCCGTTCT TGTACAGGT AGTACGGCTGGTTC    TTGTTGCCGATGTAG  51 185
 JH290_17720 4087629 .. 4087644 +  -2.4  -3.74519   TCGGTGCTGCAGCGC              GCCGGC ATGC GTGGGC               TTTCGTGGCGGTGTT  52 41
 JH290_17735 4090384 .. 4090403 +  -5.6  -3.62046   CCTGCAGCTCCCAAT            CGGTCTGC AGCT GCACGCCG             TTGTTGACGAAGTCC  54 361
 JH290_17765 4096611 .. 4096641 + -13.2  -3.14564   TGTTGTTGAAGCAGA       CATGCATGCCACGC CAA GCGTGGCGCGCACG       TTCGTGGCCGGATCA  73 105
 JH290_17810 4106426 .. 4106478 +  -3.2   -3.6502   GGAACACGCCAGCGC CGC-GTGCGGCACGATCGCCACGCCG ACG CCGCGCGCCAA-CATGCGGCACAGCG TTTCGATCCCCGGTA  53 275
 JH290_17820 4108055 .. 4108075 +   -14  -3.14931   CGCCCCAAAAACAAA            CGCCACCG ACAAG CGGTGGCG            TTGCTCACCCATCGA  76 88
 JH290_17845 4113899 .. 4113928 + -19.5  -3.68222   CCACTCCCGATTCAA       CAAAAAAGCCGGC TTTC GCCGGCTTTTTTG        TTATTCGGATTCCCA 100 117
 JH290_17915 4133881 .. 4133908 + -13.5  -2.82516   GGACAACTCAGCACG        TCGGCGAGCCGC TGCCT GCGGCT-GCCGA        TCTGCTACTGCGGGC  72 293
 JH290_17920 4136377 .. 4136390 +  -3.7  -3.96148   GACGGGTGGTGCTGT               GGCCG TGTG CGGCG                TTTGTCATGCGCGCA  58 147
 JH290_17980 NONE
 JH290_17985 NONE
 JH290_17990 NONE
 JH290_17995 4156461 .. 4156472 +  -3.6  -2.93572   GCGGTTGTCGTTGCA                GCGC CATG GTGC                 GTTTGTGCCGTAACT  42 62
 JH290_18000 4157133 .. 4157151 +   -16  -3.63515   ATCGCCGCAAAAAAA             GACCCGCC AAC GGCGGGTC             TTCTTACAACTGACG  91 215
 JH290_18050 4167787 .. 4167798 +  -2.2  -3.50393   TTGACTGGCCTACTC                TGGC CCGC GTCA                 TTGTGTGCCGTAGCC  47 98
 JH290_18075 4173400 .. 4173420 +  -3.9  -2.88544   GCCGCCAGGGCGCGC            GGCCGGT GCTCGAA ACCGGCA            TGTATCCACGTACGG  44 126
 JH290_18080 4173931 .. 4173952 +  -5.8  -3.22884   GCGGTAATGGGTAAT           GCGCTGCGG CGACA CCGT-GCGC           TTGGTCGATTCGTCC  51 462
 JH290_18090 4175843 .. 4175895 + -11.2  -2.82516   GGCAGCTGCGCAGCG CGC-GCTTCGAACAAGCGATCGGCG ATGC CGCCGATGTCTTGGGCGGGGCTGCG TCTCGTCATCGGCCA  63 388
 JH290_18130 4188644 .. 4188661 +  -6.9  -2.71364   TCGCTGTACACCGCC             GCGCGGT TGCG GCCGTGC              TGCTTGGCCCAGTAC  48 141
 JH290_18145 4193070 .. 4193128 + -20.6  -3.05327   CCACGACCTCGTAGG --AGCGCCCTTGGGCGCGATGGG-CATTG CCGA TAACGCCCCATCGCGCCCAAGGGCGCTCC TACGTTTTTTTTGGC  93 145
 JH290_18150 4195767 .. 4195779 +  -9.1  -2.51725   TGTATCAGGCAGGCA                CTGCG CAC CGCAG                ATGTTGGTGTGCAGT  56 46
 JH290_18155 4197238 .. 4197252 +  -5.6   -3.2655   TAACGGCCAACCGCC               GCGCCT CGC ATGCGC               TTACGTGTTTGATTG  52 418
 JH290_18165 4200495 .. 4200508 +  -2.4  -2.78547   GGCCGGCACTGCCTC               GATG CACATC CATC                TGCTTGCTGCGGTGC  39 78
 JH290_18170 4203757 .. 4203789 + -15.6  -2.95404   CGCAGGCGATATCCA      CGCCACGTTATCGG CCTGC CCGCTAGCGTGGCG      TCCTTCCTTTTGCTG  79 269
 JH290_18175 4204970 .. 4204990 +  -6.8  -3.14931   CAACTTTAAAAAAAT            GGACGTCC CTTGC GCACGTCC            TTGCTCGGCACTCAC  53 229
 JH290_18190 4208425 .. 4208442 +  -8.3  -3.01791   TGGGAATCGACCGCT             AGCGCGC GGTG GCGCGCA              TCTTGCAGCAGCCCT  57 24
        treA 4210339 .. 4210361 +  -8.3  -2.71731   AGCGCAAGCCCGAGC           CCGCCGCTC CCTGA GCGTGGCGG           TGGTTGGCGCATGCC  54 12
 JH290_18200 4211459 .. 4211492 + -10.4  -3.33696   CCTCCATGTCGGCCA    CGT-TATCGCCAGCCG TAAT CGGC-GGCGATGCACG     TTGCTTCGACAACGC  66 83
 JH290_18205 4212928 .. 4212944 +  -2.9  -3.32024   CGGCTATCCAAAGAA              TATCGTC TCG GTCGATG              TGTTGGTCTTTGTCG  46 154
 JH290_18210 4213576 .. 4213592 +  -2.9  -3.60098   ACGCCCAGCGCCCAG              TAGTACG CGT CGTGCCA              TTTGAGCTCGGGCAT  49 178
 JH290_18230 4218905 .. 4218926 + -12.3  -3.67792   GCGCTGCAACCACGA           TGGC-GGCGC CTT GCGCCCGCCA           TTTCAATCGCTGTCG  75 109
 JH290_18235 4221428 .. 4221439 +  -4.4  -3.55563   ACGTCGCATCGGCCT                CTAC TTGG GTAG                 TTTCGCCGGTGCAAT  53 466
 JH290_18245 4223108 .. 4223132 +  -3.5  -4.70659   CCAGCGGGCCGATCA         CGCCGGCACC GTACAG GGTGA-GGCG          TTTTTCGCTGTGCCC  73 502
 JH290_18255 4225180 .. 4225205 +  -8.9   -4.2349   ACAGCCCACCGAACA         CC-GGCGGCCGC CGC GCGGCCTTCAGG         TTTTCCATCTCCACG  76 305
 JH290_18265 4225922 .. 4225937 +  -3.2  -3.21099   GGGGGCGGCCGAACT              GCGGCCG TGA TGGC-GC              TTGATCATCAAGCCA  44 43
 JH290_18275 4227313 .. 4227370 + -20.8  -2.79116   CAGTCGTCACCACGC GCCCGGTGCAGGGAGATCGGCAG-ACAC CACG GTGTGCTGCTGATA-CCCTGCACCAGGC GTGTTTGTATGTGGC  91 63
 JH290_18290 4231603 .. 4231613 +  -2.4  -3.13772   GGTTGCGCCACTCTG                 CTCG GCG CGCG                 TCCTTTTGATGAGGT  43 156
 JH290_18295 4234415 .. 4234428 +  -4.5  -3.34715   AGACCACCGTCTCGG               TGGTC TGCA GGCCA                TATTTGAGCCACATG  49 483
 JH290_18310 4235595 .. 4235608 +  -9.5  -2.78463   GCCAGCCGTCCCAAC               CCGGG CTTT CCCGG                TATAGTCGCGCAACT  57 151
 JH290_18315 NONE
 JH290_18320 NONE
 JH290_18325 NONE
 JH290_18330 NONE
 JH290_18335 4240660 .. 4240680 +  -5.4  -2.78384   ATCGCTGCTGACCCA           CG-TGGTGC GGCG GCGCCAGCG            TGTGATGCGCGCGAA  44 68
 JH290_18340 NONE
 JH290_18345 4242443 .. 4242453 +  -8.2  -2.55999   GACGTCAGCTGCCAG                 GCGG ACA CCGC                 GTTGGTCTGACGTCA  53 145
 JH290_18350 4243131 .. 4243149 +  -6.6   -3.6106   GGCCGGTGCCGAGCG             CGCGGTCG ATC CGAATGCG             TTTGGCCGTCTTGCC  59 91
 JH290_18370 4248126 .. 4248139 +  -2.3  -3.87994   TACAGCCTGACTCAG               GCACC GTGC GCTGC                TTTCTGAAACTCGAT  54 171
 JH290_18380 NONE
 JH290_18385 4250828 .. 4250850 +    -9  -3.09516   CGGTCGAAGCCAATA           CCCGCCGCTT TGC GGGCGTCGGG           TTCGGTCATCGCCCC  59 241
 JH290_18410 4254586 .. 4254598 +  -3.3   -4.3014   ATTCCACAACCAACT                GATCG ACG CGAAC                TTTTGATGCCTCTCT  63 462
 JH290_18450 NONE
 JH290_18455 NONE
 JH290_18460 4267140 .. 4267166 +  -2.2  -2.91264   GCCAACGCCTGACGC        CGTCGCCTGCG CGCACA CGTTGG-GACG         TGTGTGCGTGCGGCG  40 29
 JH290_18465 4268259 .. 4268284 +  -8.3    -2.974   CATCCGCCCTTCGGG         C-ACCTTCTCCC GAG GGGAGAAGGGAG         TGGTTTACGTGTTCG  57 431
 JH290_18515 4278709 .. 4278719 +  -8.2   -3.3334   GCGACACCTGAGCCT                 GCGC ACC GCGC                 TTGTGCCGTGACATT  60 30
 JH290_18520 4280014 .. 4280031 + -14.1  -4.96848   GCGCACAAACAAAAA             GCCCGCC AATT GGCGGGC              TTTTTGTATCCCACA 100 434
 JH290_18535 4282923 .. 4282936 +  -8.1  -2.78596   GATGACGACGGCATC               TGGCG CGTG CGCCA                TCTACTCAACCGCTG  54 356
 JH290_18545 4284029 .. 4284052 +  -8.8  -3.04263   AAGGCGCTGCCAACA          CCGGTAGGCCG CTA CGG-CAACCGG          TATTGCGGCTGCGGT  57 45
 JH290_18550 4284947 .. 4284960 +  -8.1  -2.89177   GCTTGTAGACGCGCT               GCTGC CACC GCAGC                TCTCATGTCTACCGT  55 249
 JH290_18555 4286755 .. 4286780 + -11.1  -3.96148   GCACGCACACGTGCC         TGCGCACCCTA CTGC TGGGGTGCGCC          TTTCTGGTCACCGCA  79 204
 JH290_18560 4287249 .. 4287267 +  -6.6  -3.05384   CGCACGGCAGTGCGA             GGCACGCG GGC TGCGTGCA             TTGCATCAGCGACAA  51 50
 JH290_18605 NONE
 JH290_18610 4299221 .. 4299248 +   -17  -3.76224   TCAGGCAATAAAAAA        GCCCGCTTGCAG CGAA CTGCCAGCGGGC         TTTGCTCCCTCCCCC 100 71
 JH290_18625 4306515 .. 4306532 +  -4.1  -2.80779   GCATAAATCATGCTG             TGGCAAT GCGA ACTGCCA              TGCTATTGCTATTGC  42 224
 JH290_18630 4307061 .. 4307091 + -21.8  -4.20868   GGGTGGTGTCCAATC       CGTCGGGCCGGCTC CCT GTGCCGGCCCGGCG       TTCTTGTTTTAGAAC 100 345
 JH290_18665 4317600 .. 4317613 +  -3.1  -2.57564   CGGAATCACTACGTT               GG-AGC GTC GCTACC               GTTGTCACCGCCTGG  39 249
 JH290_18670 4319924 .. 4319955 + -24.6  -2.78384   GTAGTGGAGCGCACA      CACAAGACCCCGCC TTTG GGCGGGGTCTTGTG       TGTGATGCAACAGCC 100 84
 JH290_18690 4325637 .. 4325652 +  -3.2  -3.51598   GTGGTGTTTTTGCTG              GGCG ACGCAGCC CGCC               TTGTCATCGTTTGTT  49 187
 JH290_18695 4326388 .. 4326404 +  -2.1  -3.16881   GTGCGTGCCGAAACC              CGCAAGG AAT CCTGACG              TTCATGAAGTCCCTG  43 11
 JH290_18700 4328917 .. 4328966 +  -3.5  -3.87815   GCCGCGCTGGTGTTC CACG-ACTGCGCCTGCATTTGTCG CAC CGACGACTGCAGCTGCGATGCCTG TTTCTAGGCATCGAC  56 228
 JH290_18715 4331139 .. 4331154 +  -2.5  -3.53012   AAAGGACGGATCGCC              CGG-GC ACTCG GCACCG              TTTCGAGAAACAACG  47 196
        aroQ NONE
 JH290_18725 NONE
 JH290_18730 NONE
        accC 4334738 .. 4334753 + -11.8  -4.84527   GCTGGCCAAGAAAAA              GGCGGG GAAA CCCGCC               TTTTTCGTGTCTGCG 100 51
        prmA 4338193 .. 4338230 +  -4.2  -3.57144   GGTGTCGGCGGCACA  GGTTT-TGGGCGC-GGCGC CGC GCGCCAGC-CCCACAGACG  TTTGCACATGACGGC  51 475
 JH290_18760 4338999 .. 4339017 +  -8.1  -3.06679   GCGGCAGCGGGTTCG             CCATGCG GCGCG CGCGTGG             TTGAATAGCGGTCTT  57 259
 JH290_18765 4340445 .. 4340463 +  -4.5  -3.15544   GACTCACTCCCCCTC             GCCGG CCACGCGTC CCGGC             TTCGTGACACTGGGA  47 100
         fis 4340845 .. 4340857 +  -6.3  -3.17723   CATGAACATGCGTGG                TTTGC ACC GCAAA                TTAGGTTCGGGATGC  53 112
        purH NONE
 JH290_18820 NONE
        purD NONE
        yccS 4355263 .. 4355293 +  -6.7   -4.2828   GCCGATTCCCAGCAC      CGGCCGCGCCCGCC TGAC GGCTG-CGCAGTCG       TTTTGATCGCTGCGC  73 302
 JH290_18845 NONE
 JH290_18850 4359496 .. 4359534 + -10.8  -3.64703   GGAGCACGCCTGACG   GCCAGGGCGCGTGCGTGC CGG GCACTGGCGGGCGCTGGC   TTTGCGTCCGCCGCG  73 28
 JH290_18855 NONE
 JH290_18860 NONE
 JH290_18865 4360989 .. 4361019 +  -7.5  -4.28994   GCCGATTCCGAGCAC      CGGCCGCGC--CCGC CTG GCGGCTGCGCAGTCG      TTTTGATAGCTGCTC  76 120
 JH290_18900 NONE
 JH290_18905 4367531 .. 4367545 +  -3.5  -2.73364   GGGCAGGAGGCCTTC              GCG-GC TGGA GCACGC               TGGTTACCCTGGCCG  40 51
 JH290_18910 4370105 .. 4370117 +  -4.7  -3.09635   CGCAGGACCTGCGGC                CGCCC TCA GCGCG                TTCAGTCGTCCAGCT  47 321
 JH290_18930 NONE
 JH290_18935 4372051 .. 4372072 + -12.3   -5.4505   CAGCCAAACACGAAA           GGTCCGATC TAAC GATCGGGCC            TTTTTTGTTGCCCGC 100 35
        coq7 4374675 .. 4374716 +  -2.8  -4.63218   GCCGCCTGACCCAAT CGCGGCGCATGCCTCGGCG CACGC CGCTGAAGCA-GAGCCCCC TTTTGTTGGGGAGGC  69 181
         crp 4376945 .. 4376964 + -13.6  -2.53263   AGCGTGGGGTGACGA            TCGGTGCG CTGG CGCACCGA             TCGCTTCGCAATACC  71 40
 JH290_19025 4388905 .. 4388932 + -15.6  -3.86015   TATTCGCCCCATGTG        CGCCCGGGAATC TCCA GGTTCCTGGGCG         TTTATGCAAGACCTC  91 84
 JH290_19035 4390903 .. 4390913 +  -4.6  -4.16016   TAAAGCAGCAATGGC                 GGGC AGC GCTC                 TTTCTTGAGCGCTGA  65 78
 JH290_19040 4391831 .. 4391849 +  -5.9  -3.85698   CTGTGAGGACATTGG             CTTGCCG CATGC CGGCCAG             TTTGTGCAACCCACG  62 195
 JH290_19045 4392556 .. 4392577 +  -3.5  -3.57462   ATCTCCGTGCTACCT           GCTCTCGGC CTGA GCCTGGTGC            TTTCCGCATGCGGTG  51 132
 JH290_19050 NONE
 JH290_19055 4394928 .. 4394950 + -14.1   -5.4251   ACGATGCACGAAAGA           GCCGGCCGG CCTGT CTGGCCGGC           TTTTTTGTATCTGCC 100 45
 JH290_19065 4395943 .. 4395961 +  -6.6  -3.52341   GCTGGCGAAGTTGTA             TCGCCACC TGG GCTGGCGG             TTCTGATCTTCGGGT  57 1
 JH290_19075 NONE
 JH290_19080 NONE
 JH290_19085 NONE
 JH290_19090 NONE
 JH290_19095 NONE
 JH290_19100 4403273 .. 4403294 +  -6.5  -2.85061   CGCGTCGGCATGCCG           CAGGCTCAG CGCA CTGGGCATG            TACTTGTGCGGTTGT  48 255
 JH290_19110 4404793 .. 4404806 +  -4.5  -4.28994   GCCGCGCCCGCCTGG               CGGCT GTGC AGTCG                TTTTGATAGCTGCTC  66 230
 JH290_19135 4409417 .. 4409434 + -14.1  -5.20333   CACCCTCAACAAAAA             CCCCCGC ACTG GCGGGGG              TTTTTGTTGTAACTC 100 467
 JH290_19155 4417159 .. 4417180 + -14.4  -5.93809   TTCAACTGTGGCAAA           GGGCGCGG CCTGGT CCGCGCCC            TTTTTTTTGTGCAAC 100 64
        pdhA NONE
 JH290_19165 4419450 .. 4419465 +  -4.6  -2.74144   GTGGCTGCCGGCTGA              CATGCG CGCC CGCCTG               CTTTGCGACTACCGC  44 26
 JH290_19170 NONE
 JH290_19175 4421476 .. 4421492 +  -5.8  -4.25104   ATGCATCTCAGGGTC             GCGCGCG TGAT CG-GCGC              TTTTGGTCGAACCGG  71 195
 JH290_19185 4424888 .. 4424906 +  -8.1  -3.14132   ACTGCAGCGCGGGCT            GGCCTGGC AACC GCC-GGCC             TTGGTAACCGAACGC  58 108
 JH290_19215 4433146 .. 4433173 + -14.1  -2.87211   AGTGGCGGTGCAGGA        ACCCGCGCAGC GCTGAG GCTGCGCGGGG         TCTGTCACGGGCCGT  74 10
 JH290_19230 4436634 .. 4436646 +  -4.1  -3.54741   TGTGGCTGTGTGTTT                CGAAC CAC GTTTG                TTTGACGGCCTGGTA  53 50
 JH290_19275 4453045 .. 4453069 +    -2  -3.28712   GCGAATGGTCGTGCC          CACTTCCCGC ATCAA GCGATAGGTG          TTGTGGCGCCGCCAA  44 514
 JH290_19290 4457307 .. 4457319 +  -4.8  -2.90496   CTATCGCGCCACAGG                CGCA ATGAA TGCG                TGCTTTCAACCGCAC  46 306
 JH290_19295 4459970 .. 4459997 +  -3.2  -4.00042   CTCCTGATCGGGTCT        CTGCACCGCTAG CAGG CGGGCGTTGCTG         TTGTTTGCTGCGGCA  58 34
 JH290_19305 4464418 .. 4464460 + -15.6  -2.71268   ATCCCTGAAAACGCG ATCGGCCCGTTTGCAATGGC AGT GCTATCACAAACGGGCCGAC TCATGTCTGGTGCGC  78 95
 JH290_19320 4469673 .. 4469693 +  -3.2  -4.69053   AGCACCGGCCGCGCT           CGCCTGGCG GCTG CGC-AGGAG            TTTTGTTAGATGCTC  73 353
 JH290_19330 4470590 .. 4470624 + -15.7  -2.71681   CCTTGCCCACGCTAT    CC-GCAGCTGGGCCGC CATG GCGGCCTTGCTGCTGG     TGGTTGCGCCGGTTG  78 81
 JH290_19335 NONE
        ubiA 4476912 .. 4476931 +  -8.5  -3.84406   GCGCCAATCCCCGGG            CGCGCTG TCGCCT CGGCGCG             TTGTTGTCATGACAC  71 301
        bioB 4478868 .. 4478921 +    -3  -3.07962   GCGCCCAGCTAGCAC CGGCCG-TCG-GTGCCG-GCTGGGCGC GCT GGGCCCGGCACGATACGCTAGCGGCCC TCTTCCGCTGTCGAC  43 49
        bioF NONE
 JH290_19375 NONE
        bioH 4481448 .. 4481472 +  -6.4  -2.52464   TGGGGTGCACTTCCG         CTGACGCAGGC CTGA GCCTGCC-CAG          TACATTCGACAACGC  48 163
 JH290_19385 4482851 .. 4482866 +  -2.4  -3.04715   TGTTGATCGACGGCG              GCGCCT ACCC GGGCAC               GTTTTGACGCCACTG  41 3
        bioC 4483888 .. 4483921 +  -5.1  -3.06133   GCGCGCAGCCGCCAG     GCAGGCG-CGGCCGCG GCA TGCACCAGTCGCCTGC     TTCGGTGCCCCGTTG  47 59
        lpxO 4485303 .. 4485329 +  -7.2   -3.1994   GCCGGGCAGCACATA         GGTCTGCCCG TTCGCGT CCGGCAGGCC         TTCGTCGGTGGTGTG  52 293
 JH290_19415 4488059 .. 4488076 + -14.1  -3.97368   CCTCCAATGCACAAA             GCCCCGG CATG CCGGGGC              TTTGTGCATTGGAGC  90 234
        mnmG 4490330 .. 4490366 + -11.5   -3.0814   GGTCGGTGCGCAGGA   CAGCGGCGGCGGCGTG ACGTCA CACG-CGCCGCCCCGG    TCTTGAAGTCTGCAT  66 48
 JH290_19425 4491364 .. 4491386 +  -3.3  -3.69094   CTGAGCGCACGCACA           GGCCGCG CGACTTGGT CACGGCC           TTTCGGTAATGCGTT  54 37
 JH290_19440 4494851 .. 4494866 +  -3.2  -3.48276   GTCGGCCGCGAGTGC              GGCG GCCACATA CGCC               TTCTGTACGGCGGCG  48 314
 JH290_19490 4504374 .. 4504419 +  -2.4  -2.97747   GCATGGTGGGTTGAT GGCCATGCGCGATGCATCAA CACCGC TTCACGTTGCGTGCGTGGCC TGTGTCCTGTCGCCA  41 27
 JH290_19495 4505557 .. 4505575 +  -4.4   -3.5393   CATCGCGGTGGTTTG             AGCGACAG GCC CCGTCGCC             TTTCGGGGCAGTCAT  53 79
 JH290_19500 4506833 .. 4506866 + -11.1  -3.20878   TTCACGCCTCCGCAA     GGCGTCATGTTCGAA TATG TTCGAACATGACAAC      TTAGGTTCGCTCTTG  67 300
        glpD 4508446 .. 4508476 + -15.6  -2.78384   TGACAGCGTGACTGA       CGTTGCCAACGA GGAAGGG TCGTTGGCAACG       TATCCTGGCGCGCGC  78 38
 JH290_19510 4509466 .. 4509489 +  -6.6  -4.41616   CTGCACTGACAGTCA          CGCCGTGCGCG CGG TGCGC-CGGCC          TTTGTTTCGAGGAAT  76 49
        glpK 4511016 .. 4511051 + -13.2  -3.61764   ATCAGCTGATCACCC    TACATTGCCGGCCCGC ACCT GCAGGCCGGCAACGCA     TTTACCGATTACTGA  77 32
 JH290_19530 4514391 .. 4514418 +   -12  -2.78935   TCGTGGGTGGCGCCG        GCTTCGACCGCCG CGC CGGCG-TCGATGC        TGTCATCGACGATGT  62 453
 JH290_19570 4522213 .. 4522224 +  -7.2  -3.51365   TGGGCGCGGCCAGCG                CGGG CTGA CCCG                 TTGTCTGCCATGTAA  60 18
 JH290_19575 4523262 .. 4523285 +  -8.8  -3.21416   GCAGGTATTTCCCGC          CTGCCGCGCT GTGA AGCGCGATAG           TTGCTGGTGGCACTG  58 89
 JH290_19585 4524196 .. 4524239 + -17.4  -2.71144   CGTGCGAGATCACCG GAACGCGCCGCGACGGTTGC AGCA GCAACAGTCCTGGCGCGGTC TAATTGCCAGCCATC  84 202
        ilvD 4526209 .. 4526229 +  -5.3  -4.57073   TCCCGATGCCTGACT            GCAAACCCA GCG TGGGGTGGC            TTTTTAGAGCCGCTA  74 116
 JH290_19605 4527870 .. 4527893 + -14.6   -3.3482   TAACAATTCATTCAA          GCCGAACCCGC TTC GCGGG-TCGGC          TTAATTCAGGCGTTA  82 45
 JH290_19610 4528201 .. 4528224 + -14.6   -3.3482   TAACAACTCATTCAA          GCCGAAGCCGC GTC GCGGC-TCGGC          TTAATTCCGGCGTTA  82 62
 JH290_19615 4528548 .. 4528571 + -14.6   -3.3482   TAACAATTCATTCAA          GCCGAACCCGC TTC GCGGG-TCGGC          TTAATTCAGGCGTTA  82 45
 JH290_19620 4528877 .. 4528900 + -14.6  -3.06133   TAACAATTCATTCAA          GCCGACCCCGC TTC GCGGG-TCGGC          TTAACTAAGGCGTTA  78 59
 JH290_19625 4529339 .. 4529362 + -10.2   -3.3482   TAACAATTCATTCAA          GCCGAACCCGC TTC GCGGGC-CGGC          TTAATTCAGGCGTTA  66 38
 JH290_19630 4530528 .. 4530551 + -11.8   -3.3482   TAACAAATCATTCAA          GCCGAAGTTGC TTC GCAACT-CGGC          TTAATTCAGGCGTTA  72 54
 JH290_19635 4531476 .. 4531498 + -14.9  -3.53733   GTCGCAAGCTCAAAG           GGACGCAGC AGTTC GCTGCGTCC           TCTTTCTCAAGTCAG  83 296
 JH290_19640 NONE
 JH290_19645 4533741 .. 4533766 +  -3.9  -3.14344   CGCCGGTGCTCGGAA         TCGGCATGTAC CCAC GTACACTCCGG          TTCCTCCGCGCCGTC  47 174
 JH290_19650 NONE
 JH290_19655 NONE
 JH290_19660 NONE
 JH290_19665 4535468 .. 4535480 +  -5.5  -3.07013   CAGCGTTGCTCACGC                GGCAT GGC GTGCC                TGTCTTGCAGCACTC  49 48
 JH290_19685 4540425 .. 4540452 +    -4  -2.78596   AACTCCGGTCGCTGC        CGATGGCGTGCA GGCT TGGTCGCCATGG         TGTCGTGCGGGGATC  42 264
 JH290_19690 4542839 .. 4542851 +  -5.5  -3.01712   TTCCACAACCGACCA                TGGTG CGC CGCCA                TGTTGCGAACCACGG  47 494
 JH290_19715 4547893 .. 4547903 +  -8.2  -3.25942   CTCACCACCACAGGA                 CGGC GCC GCCG                 TTGATGTCCCCGGAT  60 124
 JH290_19720 4548767 .. 4548790 +  -3.8  -3.60792   CCGCCACGCGCGTCC          ATTGGCGG ACTGACAC CCGCCAAG           TTTCGGGGTTCGCCA  53 13
 JH290_19725 4551078 .. 4551088 +  -6.8  -3.06915   CAGCATGCGTGGGAC                 CACG TAG CGTG                 TTGCGTGCAGTCAGT  51 92
 JH290_19755 4559541 .. 4559587 +  -9.3   -2.5547   GCAGCACGGCCACTG CC-GCTTTCGCGTGCGCCGCGGC CCT GCC-CGGCGCGCGCCCGACCAGG ATTCCTATGAAGCCT  56 41
 JH290_19760 4560639 .. 4560672 +  -5.3  -3.63991   GCAGGCGCGATCTAG    CGGTG-C-GCGCGTG AGACGG CACGCGCAGTTGCCG     TTGTTGCACGTCGTC  55 42
 JH290_19770 NONE
 JH290_19775 4564583 .. 4564597 +  -9.2  -3.02144   GCCGGAAGAATGCGC               GCGCGG CGG CCGTGC               TGTTGGCAGCGGTCA  57 82
 JH290_19790 NONE
 JH290_19795 4569199 .. 4569228 +  -3.4  -3.66178   CGCCGCCTGCCGGCC       GCTGGGGC-GCGC CTGAT GCGCTGGCCCGAC       TTTGCGCTTGCCGCC  51 464
 JH290_19800 NONE
 JH290_19805 NONE
 JH290_19810 NONE
 JH290_19815 NONE
 JH290_19820 4576690 .. 4576703 +  -4.5  -2.81133   TGGCTGGGTGGTAAG               GGTTG GGTG CGACC                TCTCGTGCCTGCGTC  42 27
 JH290_19845 NONE
 JH290_19850 NONE
        puuE NONE
        hpxZ NONE
        uraD NONE
        hpyO NONE
        uraH 4588618 .. 4588636 +  -6.6  -3.53012   GCCCGGTTTCACCGC             GCGCCCGT AGA ATGGCCGC             TTTCCGGCACCGCGC  57 90
 JH290_19880 4589562 .. 4589588 + -10.9   -3.7829   CGGCCGAGGCTTCTT        CCA-CCAGCGCG GCGT TGCGCTGGGTGG         TTTCGTCCATGTCGT  77 444
        hrpB 4594355 .. 4594371 +  -3.7  -4.07568   GACTTTGCCCGTGCG              CAAAAGC CTC GATTTTG              TTTTGGCACGCGCCA  61 151
 JH290_19895 4595080 .. 4595101 +   -13  -4.93365   TGTAACACCCTTTAA           CGCCACGG CTGACA CCGTGGCG            TTTTTCGTTGTGGCA 100 51
 JH290_19910 4598659 .. 4598679 + -12.5  -2.72043   GCGGCTGTGCCCCCA            CGACCGCGC CTT GCGCGGTCC            CTTTCGCGAGGACTT  68 99
 JH290_19915 NONE
        dkgB 4600628 .. 4600654 + -20.2  -4.15833   ACGCGATGGTTTGCA         TCCGCACCGGCA CGC TGCCGGTGCGGG         TTTTGCGGTACTGCT 100 56
 JH290_19925 4601211 .. 4601233 + -14.8  -3.21416   TTGCCTGGAATACAG           CTGTCGGCGC AGC GCGCCGACCG           TTACTGCTGCGAATC  80 174
 JH290_19935 4602519 .. 4602543 +  -9.1  -2.65815   CGAGGCGTAGATCTC          GCGGCGCGGCG CTG CGCCGGGTCGG          TGGTGTAGCTGTCCC  56 300
 JH290_19975 4608240 .. 4608250 +  -2.4  -3.85698   TGCAGACGCGTCACC                 GCAG CAC CCGC                 TTTCTCAAGCCCCCA  54 220
 JH290_19980 4609699 .. 4609713 + -11.4  -3.09327   AGCGGGTGCCACAGC               CGCTGC ATC GCAGCG               TATTCGCTGGCATCG  66 380
 JH290_19990 4611307 .. 4611360 + -10.7  -3.53012   GCGCGGCACGCCCTG GGCGATCGGCTCGCCG-CGGCTCGGC AAG GCCGGGCCGGCGACACCCCGTTCCCC TTTCGCACACGCAGG  71 41
 JH290_20005 NONE
 JH290_20010 NONE
 JH290_20015 NONE
 JH290_20020 4617300 .. 4617336 +  -4.9  -3.72576   AGTCTCAGCACAATG    TCGCCGGGCAGTACGGC AAT GCCGAATTGCCGAGAGG    TTTGGTCGACCCACA  58 196
 JH290_20040 NONE
 JH290_20045 4622124 .. 4622138 +  -3.4  -4.49316   GTGATGGGCAGTGAC               CTGCCG CAG CGGTTG               TTTCTTCTTCGTCCT  67 197
 JH290_20050 4624298 .. 4624318 +  -7.5  -3.05463   CCTCTAGCGTGGCTG            CTTCGGCTG GAT TGGCCGAGG            TTCCCTCCGGAGGCT  54 89
 JH290_20055 4626432 .. 4626485 + -14.6  -4.06419   CGATTCGGAAGTAGG CC-TGCCGCTGCGGTTCGTCGCCAGC GGAC GCTGGCGACGAACCGCT-CTACGTGG TTATTTCTGCAGCGC  93 27
 JH290_20065 4628260 .. 4628316 +  -8.7  -2.70932   CTGCGCAGGTAAGCA GGCAGACGCGTGA-CGGGC-CAGGCG CGAACAAA CGCCAGCGCCTGCTCGCGCGCC-GCC TGGTTGCGGCCAAGC  54 29
 JH290_20090 4636422 .. 4636433 +  -2.2  -3.39895   AGCACGGCGCGGGAA                TGCA TAAC TGCG                 TTGATTCCTGCAACG  47 184
 JH290_20100 4638442 .. 4638470 +    -6  -4.25104   CGACACGGTAACTGG       CCTGA-GGCATGC CGAT GCGTGCCATCACG        TTTTGATGGCGCACC  71 30
 JH290_20105 4641051 .. 4641074 + -18.2  -3.68529   GCGACGCAACAAAAA          CGGGATGGCC GCAA GGCCATCCCG           TTTCGATCATCGCCT 100 68
 JH290_20130 4646412 .. 4646441 +   -10  -3.17075   AGTGGGAGAAGTCTG       CTCCATCTCCTC TCCACC GGGGAGAGGGAG        TTGGGTTGAAGGCGG  64 160
        ddlA NONE
 JH290_20155 4651920 .. 4651947 + -18.4  -2.82516   TGCCGCAAAAGCGCA        CGGCCCGCCTCC TTGC GGAAGCGGGCCG         TGTGATCGTCAACCG  86 56
 JH290_20175 4655798 .. 4655849 + -11.5  -2.64099   TGCCCGGTGCATCCA CTTCGCACACG-GCGCGCGCAGCTC TTCG GCGC-GCGCGCGCACGGATGCGAAA CTTGTCCTACAGCGG  62 111
 JH290_20210 NONE
 JH290_20215 4665385 .. 4665409 +  -7.2  -3.14944   GCGCCTGCAGTTGCT         GGCGT--GCCTG GTC CAGGCGCACGCC         TTCGGTCTGCTGATA  52 474
 JH290_20235 4668277 .. 4668302 + -19.1  -4.77775   TCCCGCGCTGCATCG         GAAGCCCGGTC CCCC GACCGGGCTTC          TTTCTTTTGTGCGGT 100 70
 JH290_20270 4673810 .. 4673821 +  -7.2  -2.78384   GTGGCGGATGACTGC                GGCG CCTG CGCC                 TGTCGTGACCGCCCG  52 91
 JH290_20275 NONE
 JH290_20280 4676131 .. 4676154 +    -6  -4.18197   CGCACGCCACGGCTG          CGCCA-CATTG CAT CAACGCTGGCG          TTTTGCCTGCGGCAT  67 69
 JH290_20295 4679081 .. 4679132 + -10.7  -2.59431   TGGCCGCATGACCTC GGCGCCGGCCTCCACCGCACCCGC CCTGC GCGGGA-TGCTGGAGACCGGCGTG TGCGTTCTACGCGCA  62 30
 JH290_20300 4679610 .. 4679634 +  -6.9  -3.67792   GGCTTGGTGAGCAGG          CGGCAGTCACG TTA CGCGCCAGCCG          TTTGAATGCATCTCG  59 151
 JH290_20345 4690033 .. 4690065 + -11.9  -3.18582   CAGCTGCAACGCGCC      CACGATGCGCATGGC ACT GCCCTGCGCAGCCTG      TTCGTCGATGGCATG  70 311
 JH290_20415 4708234 .. 4708252 +  -5.9   -3.6502   CGTGGCGTCGATCGT             GCGCCAC AGGCA GTGGCGG             TTTGGCTGCGCGGTC  57 69
 JH290_20435 4712409 .. 4712467 + -16.2  -2.53382   GCCCACCTTTGTAGG --AGCGCGCTTGCGCGCGATG-GGC-GTTC CCG GCACAGCCGCATCGCGCGCAAGCGCGCCCC TACCTTGCAGCTGCT  79 250
 JH290_20460 4717347 .. 4717367 +  -3.2  -3.45634   AGCGATCAAAACGAC           TGCGCAGCC GCCA GGCGG-GCA            TTACGTTTTGTTAGC  49 45
 JH290_20465 4718676 .. 4718692 +  -2.2  -3.72893   GTAAACGCACCAGCC              GCGGTT AACCG AAGCGC              TTTACTGCGGCGCTG  52 83
 JH290_20470 4720403 .. 4720413 +  -3.2  -4.28994   GCGCCCGCCTGGCGG                 CTGC GCA GTAG                 TTTTGATAGCTGCTC  64 423
 JH290_20490 4724743 .. 4724758 +  -3.2  -3.63627   TAGGAGTCGGCACGT              GCACCA ATGT TGCTGC               TTTCCCGTGTACCAC  51 242
 JH290_20495 4725731 .. 4725755 +  -5.5  -3.09908   GGTAACGCGGTACAC          GCGCTGCGTGC TCG GCGAACGGCGC          ATTCTTTTCAGCAAC  49 171
 JH290_20550 NONE
 JH290_20555 4740247 .. 4740260 +  -2.3  -2.57132   GTGTTGACGCTATTG               GCCAT GTGC ACGGC                GTTGTCGGCGCAGGC  38 84
 JH290_20560 4741589 .. 4741606 +  -9.1  -3.53012   GTGTTTGTCGCAGAT             CGCCAGG GCCT TCTGGCG              TTTGGCCGGCGCCCA  64 444
 JH290_20590 4746516 .. 4746536 +   -14  -3.03124   GCGGCGGCTGTGCCC            GGCAGCCC TCCCC GGGCTGCC            TGTTCAACGATGACC  75 493
 JH290_20615 NONE
 JH290_20620 4756900 .. 4756914 +  -4.2  -3.79747   GGGATAAGTGAAGCT               TCACCG ATA CGCTGA               TTTGCTGCTGGATGC  56 30
 JH290_20625 4758483 .. 4758501 +  -8.8  -3.91897   GTTTGCAGCTGCGAG             CGCTGGGT CTC GCTCAGCG             TTTGTAGCTGGGCCA  70 172
 JH290_20645 NONE
 JH290_20650 NONE
 JH290_20655 4764151 .. 4764174 +  -8.2  -3.11619   TGTTGTCCGCTCTAA          GCCGA-GTTGT GAA GCAACGTCGGC          TTGAATGAATTGTTA  58 249
 JH290_20665 4766273 .. 4766283 +  -6.8  -3.05463   TCTCTTGGTCGTTCT                 GGCT GTA AGCC                 TTGGCTGCGAGAACT  51 440
 JH290_20675 4770158 .. 4770184 + -15.8    -3.794   GCTTTCTGGAGCAAC         GCCGAGCCGGAC CTT GTCCGGCATGGC         TTTCATCAGTTCAAC  90 218
 JH290_20685 4772260 .. 4772272 +  -4.7  -3.73302   CCAGCCGGTCATGCT                GGCGC GCT GGGCC                TTGTTCGATGTGTTG  58 513
 JH290_20715 4785226 .. 4785255 +  -2.8  -3.36327   GCGTCCCCTGCCCAT      GCTGCC-TTCCCTG CAAT CGGGGACCGGC-GC       TTCTCGATAGACTGC  46 76
 JH290_20720 4786604 .. 4786644 +  -7.4  -4.24342   GCGCTACCTGTTATT CGCTGCGCTGACGCGTATC AGGC GG-GCGCGCGGGCGCGGCG  TTTGTTGATGAACCA  72 45
 JH290_20735 NONE
 JH290_20740 4792609 .. 4792640 + -18.8   -4.1891   AGTAAGGCATGGCCG      CACCTGTCTGGCGG CCTG CCGCTGGACAGGTG       TTTGTGTTGCCGCCG 100 36
 JH290_20755 4795733 .. 4795745 +  -6.9  -2.85351   GTGTGCATGGCGCCT                GCGGT GCC GCCGC                TATGCTGTGGCACCG  50 179
        lldD 4797403 .. 4797415 +  -3.4  -2.85351   CCTAATCCAAGCCGG                CACA TCCGT TGTG                TCTGGTCTGACCCCA  42 330
 JH290_20780 4803004 .. 4803029 + -10.5  -2.54387   GGTGTTTGAGGCTTT         TAGCGCATTCA GAAC TGGATGCGCTG          TGCCTTGGGAATTTC  59 172
 JH290_20805 4810380 .. 4810404 + -13.6  -5.24129   CTTGCGCGATGAAGA         GCCGGGA-GCG CTGA CGCCTCCCGGC          TTTTTTGTGGGCGAC 100 54
 JH290_20810 4811556 .. 4811566 +  -6.8  -2.52464   TTGAGATTTGGCCGC                 TGGG TTG CCCA                 TAAATTAGACGGCCC  48 37
 JH290_20815 4812475 .. 4812487 +  -9.1  -3.05384   TCGGGGTTTGCACGT                GCGCA GCG TGCGC                TTCAGTGGAGAACGC  60 155
 JH290_20820 4814533 .. 4814564 +   -13  -3.06302   CGCTCACCGTCGCGG      GACCTTACGCGGCA TGGA TGCCGCGTAAGAGC       TTACATGGACGTACT  71 424
 JH290_20825 NONE
 JH290_20830 NONE
 JH290_20835 NONE
 JH290_20840 NONE
 JH290_20845 4820968 .. 4820990 +  -5.4  -3.30124   TGTTCGCGCGCGAGG           CGCGGCGATG AGG CACGGCTGCG           TTCTCGCAAGTGCAA  50 15
 JH290_20850 NONE
 JH290_20855 4824658 .. 4824689 +  -8.6  -3.21416   TCCGCCGCGCGGGTT      GCACCGCTCGTGGC GTCC GCCAGCATCGGTGC       TTCGTGATGCGGCTC  58 114
 JH290_20860 4826950 .. 4826978 +  -4.3  -3.01712   CGGCGCGGGCGTCAA        CACCGCCTGCAGT GCA ACCGGCGGCGGCG        TATTGGGCAACGCGG  45 485
 JH290_20875 4829316 .. 4829354 +  -5.1  -3.35996   GCCAGTGCGAATAAC  GCCGCGCACGCG-CCGAT GATC ATCGGGCGCCGGCCCAGC   TTGTCGCTGAACATG  53 513
 JH290_20910 NONE
 JH290_20915 NONE
 JH290_20920 4838037 .. 4838053 +    -3  -3.16742   ATCGCGCACAAGCGC             GCT-CCT ACAA AGGCAGC              TTGGTCGCGGTTGCC  44 393
 JH290_20930 NONE
 JH290_20935 NONE
 JH290_20940 4842192 .. 4842229 +  -8.3  -2.56596   TTGCTTCATCAGACA   AAAAACACCGGGCCATC TGCA GATGGCCCGGTGTCGAC    TGAGTTACTGCAGAC  53 202
 JH290_20950 4845021 .. 4845033 +  -3.3  -2.54523   GATGACGCGAATGCA                CCAGC CCA GCTAG                TGCATTCGCATGTGG  39 51
 JH290_20955 4845495 .. 4845515 + -15.4  -3.66178   AGTCAAAACGCCAAA            CGCCCCGG CTTGT CCGGGGCG            TTTGGCGTTAGGGAA  86 202
 JH290_20960 4846919 .. 4846947 +  -6.7  -3.05935   AAACAAGCGATCACA       CGCCT-GCGCCA TGGACT TGCCGCCAGGCG        TTCCCTGGCGAATCT  51 374
 JH290_20970 NONE
 JH290_20975 4849450 .. 4849465 +    -9  -2.56432   GACGCCTGAAGCCCC              CATGGG CAAT CCCATG               CTTAGTGCTGTTGAA  56 340
 JH290_20980 NONE
 JH290_20985 4852058 .. 4852080 +  -3.4  -5.31275   ACACAGACAGCGGCA           CCCACC TCCGAGAATTT GGTGGG           TTTTTTGTGCTCGGC  85 220
 JH290_20990 4852534 .. 4852548 +  -7.8  -2.62184   GCCGGTTGGAGCGAG               GGCGAG TAC CTTGCC               TCGTATCACCGCGCC  51 86
 JH290_20995 4853244 .. 4853254 +  -2.4  -3.25668   GATCGACGGAGGTGA                 TGCG TGA CGCC                 TGTTCTCCATAAATT  45 19
 JH290_21000 4854175 .. 4854200 +  -8.2   -4.2123   AGATGTTGGGCATAC         GCAGCCGGCG TCATGC CGCCGATTGC          TTTCTTGGGTCGGTC  76 144
 JH290_21010 4856716 .. 4856727 +  -3.6   -3.3782   TTTAAGACCGATGGG                CGCG TCAG CGTG                 TTACTTGACTCAGTA  46 36
 JH290_21015 4857306 .. 4857349 +  -8.2  -2.90571   TGCTGCTGCGGGTGG GTGGCAGCGGTGTCGGGGTG GATAAG CACCCCGACAACTC--CCAC TCTAGTTAAGAGCTT  55 1
 JH290_21035 4860134 .. 4860144 +  -3.2  -4.28994   GCGCCCGCCTGGCGG                 CTGC GCA GTAG                 TTTTGATAGCTGCTC  64 205
 JH290_21045 4861090 .. 4861125 +   -11  -2.57931   GCACCAGTGCGACAG    TGCGCCACCCAGCACG TGGG CGTGCCAGATGGCGCG     GTTGTAGACCATGGA  59 351
 JH290_21055 4863232 .. 4863251 +  -4.8  -3.18582   CTGCCGATGACATCT            GCGGCCGC ATAG GCAGGCGC             TTGCTGAATCCGCTC  48 129
 JH290_21060 4865826 .. 4865838 +  -2.6  -3.09015   GTGGATGACGACCTG                GCGC TGGAC GTGC                TTGCATGAGTGTGAG  41 5
 JH290_21065 4868013 .. 4868023 +  -6.8  -4.09685   CATCGGCCACCAACG                 CCTG GCG CAGG                 TTTTCCAGCGTGGGC  67 423
 JH290_21075 NONE
 JH290_21080 4872452 .. 4872469 +  -5.5  -2.62184   AAGTTTATGCCCGCG             CCTCAGA CACC TCTGTGG              TCATCTGCCACGCGG  46 87
 JH290_21110 4879055 .. 4879071 +  -2.1   -5.0538   ACGCCCGCTAGCGGG              CTCCTTG GCG CACGGCG              TTTTTTCCGCTAGCC  77 30
 JH290_21120 NONE
 JH290_21125 4881099 .. 4881132 +  -3.2  -4.36914   CTCGACTGAGCCGTT    GTCATGCGGGCTGTCA GGGA TGATGGCCCG--TGGC     TTTTGTAGGAGCGCG  64 32
 JH290_21130 4882511 .. 4882535 + -18.7  -2.91383   GCTTTCCACAACACA          CGTCGAGCGAT GCA ATCGCTCGACG          TGTCTGCCTGAAGAT  91 251
 JH290_21190 4892450 .. 4892460 +  -4.6  -3.73072   CCAGCACGCTGGCAT                 CGGC CTA GCTG                 TTTGATCCCAGGCTT  58 125
 JH290_21195 4893875 .. 4893921 + -16.5  -3.14881   GCGCCCGATCGCTGG GCAGGATCTTCGCGGCGACGGT GGCC ACCGTCGCCGCGCCGG-CCGGC TTCCTGGCCGACTTG  81 420
 JH290_21260 NONE
 JH290_21265 4904558 .. 4904571 +  -6.7  -3.29511   CCCGCTTTTAGCGGA               CTCCA GAAG TGGAG                TTATGCAGCCATCGC  55 345
 JH290_21270 4905557 .. 4905570 +  -2.3  -4.39347   AGACATTTACTGACA               GCGAG TTAG CTCAC                TTTTGGCTGTTTTTT  65 73
 JH290_21345 4919711 .. 4919751 +  -3.2  -4.09739   CCGGTGCCTGCTCGA TGCCG-GTGACGCGTAGC ACTTCAC GC-ACGCGCCGCACGGCC TTTTGGCCGCCTTCC  59 424
 JH290_21415 4933180 .. 4933192 +  -5.5  -3.40522   AACATGAGCAAGGTG                TGGCT GGG AGCCG                TTGTGGTAGCCACCT  55 390
 JH290_21420 4934771 .. 4934828 + -13.2  -3.60627   GCTGCGCTCGGGCAA GGGCAGCCGCGCCAGGCGCTGCAACGC CGCCA GCGT-GCCGCCCCAGGTGCGGAAGTCC TTTGCGGTGAAGTCC  77 482
 JH290_21430 4936335 .. 4936384 +  -8.5  -3.55444   TTTTAGTCGATGATC CGGTGATCTC-CTGCACCGCTCCA TGG TCGAGCGGTGCAACGTCGTCGCCG TTTCCCGGATCGCAA  65 151
        gltB 4940897 .. 4940947 +  -2.5  -3.14132   GCCGCCGCCGGGAAT CGGGATTAGGGACTCGGGAATT-GT AGA ACTGGTTCCCC-GCCCCTCTTCCCG TTCGTCGCGACCCGC  43 40
 JH290_21440 4942469 .. 4942482 +  -3.7  -2.71011   AAGCACAGGTCAAGG               AGCCG GCTG CGGCG                TGATTCAAGACGCCT  42 9
 JH290_21445 4943184 .. 4943217 + -16.1  -3.14564   CTCTTTCGCCTAGAA     CCACCGCTTGCATCA TGGT TGACGTAAGCGGTGG      TTCATAACCAGGTGC  86 352
 JH290_21455 4946054 .. 4946072 + -11.6  -3.57144   CACAGGTCTCTTGGC             CGACGCGC CAC GCGCGCCG             TTTCAAGCTGCGCAC  75 401
 JH290_21460 4947400 .. 4947437 + -15.7  -3.07816   GTACAACTGCAGCAG   CCGGCGCACGCAGCAG ACCTGTA CTGCTG-GTGCGTCGG   TTGCATGCGTAGCCG  81 64
 JH290_21465 4948870 .. 4948891 +  -6.5  -3.14132   CTTGGGCGCGATGGA           GCGTTACCG TGAT CGGTAGGGC            TTCATCGCGCCCAAG  53 76
 JH290_21470 4949794 .. 4949819 +  -3.9  -3.15544   GACCGGTGCTCGGAA         TCGGCATGTAC CCAC GTACACTCCGG          TTCCTCCCACTCCGG  47 138
 JH290_21475 4949914 .. 4949933 +   -15   -5.7946   TCGCCACAAACGAAA            GGGCCTCC ATGT GGAGGCCC             TTTTTTTGTTCGGCG 100 51
 JH290_21490 4954080 .. 4954093 +  -4.5  -4.28994   GCCGCGCCCGCCTGG               CGGCT GCGC AGTCG                TTTTGATCGCTGCTC  66 158
 JH290_21500 4956012 .. 4956035 +  -3.8  -4.05788   CACATCTCGTAGGCA          TCGTCGGTCGC CAG GCGAC-GGCTA          TTTGCTTTGAAAAAC  61 202
 JH290_21520 4960386 .. 4960401 + -11.8   -5.7946   ATGACGTACGAAAAA              CCCCGC TTCG GCGGGG               TTTTTTTGTTGGGCG 100 54
 JH290_21525 4962030 .. 4962063 +  -4.5  -2.87931   AGCTGGGCGATGGTG     CTCATCACGTGC-TCG GCG CGCTGCGGGTGATGGG     TCTGTAGCCACTCGC  44 353
         cls 4964620 .. 4964636 +  -6.5  -2.62184   GCCGGAAGCCTTCGC              GCGGC TGCTGTC GCCGC              TGCTCTGACCACCGC  48 1
 JH290_21540 NONE
 JH290_21545 4965844 .. 4965881 +  -3.4  -3.73224   ATCGGCCGCGCAGTC  GAGCTT--GCGATGCGTG CAAT CGCGCTTCGCCCAAGCAC   TTTCGTACCCACTCA  54 103
        dnaN 4977088 .. 4977107 - -16.4  -5.24129   TTGGCCCACAAAAAA            GGCCCGGC TTAC GCCGGGCC             CTTCGTGTTCCACGT 100 52
        recF 4975057 .. 4975091 - -12.9  -3.28712   CCGTTGGCTCCACAA    CACGCACGAGGACGGC GGAA GCCGTA-TCGCGCGTG     GGAAAAGGGGGATAG  74 82
        gyrB 4972597 .. 4972607 -  -5.4  -2.94099   GCGGCGGATCAGATA                 TCCA GGT TGGA                 AACCTTCAGCGCGTT  46 8
 JH290_21580 NONE
 JH290_21575 4970827 .. 4970837 -  -2.4  -3.37796   CGCGATTACCCACAA                 CGGG GCA CTCG                 ACCGTCCTGTCGGGC  45 5
 JH290_21570 4969218 .. 4969231 -  -2.4  -3.28637   CAGCAACATCATCAA               TGCA GTAAGG TGCA                GGGCAATTACGAAAG  45 276
 JH290_21565 4968626 .. 4968658 -   -12  -2.53396   GCGAAAGGAAGACAG     GATCC-TAGGCCGGC CGCA GCCGGCCCGTGGATC      AGTTCAGAGCAAAGT  65 24
        exbB NONE
 JH290_21555 NONE
 JH290_21550 4966864 .. 4966883 -   -15  -5.71712   CCGCACACAAAAAAA            CGCCACCG TTTC CGGTGGCG             TTTGCAGTCGCGTCA 100 70
 JH290_21530 4961555 .. 4961570 -  -8.2  -3.20723   GTTCCAGCAACGCAA              GGCGCG TCCG CGCACC               GGCAGCCTGCTGATC  56 259
 JH290_21515 NONE
 JH290_21510 NONE
 JH290_21505 4956372 .. 4956428 -  -6.1  -3.12351   CTGGGTGACATGGAA TGCACGCACTGCATATCG--CGCGAATGC GTC ACAC-CGCGATCGATACGCAGCGCA-GCA GCACGACCAGTCCGG  51 368
 JH290_21495 4953647 .. 4953668 -  -8.6  -3.24747   TGGCCATACCAGCAA           GGGCGTGC TGATCG GCGCGCCC            AAGGGCAGCACGGTC  58 330
 JH290_21485 NONE
 JH290_21480 4949914 .. 4949933 -   -15  -4.13995   TCGCCACAAACGAAA            GGGCCTCC ATGT GGAGGCCC             TTTTTTTGTTCGGCG 100 152
 JH290_21450 4943184 .. 4943217 - -16.1  -3.28712   CTCTTTCGCCTAGAA     CCACCGCTTGCATCA TGGT TGACGTAAGCGGTGG      TTCATAACCAGGTGC  88 50
 JH290_21425 4934244 .. 4934274 -  -3.2  -4.08767   TGGAGGCCGTCAAAA      TCGGGCG-CACGT ATCGCA ACCTGCCGCCCGC       CACCACCTATCGCCT  59 168
 JH290_21405 4929481 .. 4929524 -    -9  -3.18735   GCAATACCTTAGCAA CATGCATGCACGCATGCAA GCCTATT TAGC-TGCACGCATGCATG ATTGCAAGACGGCAT  61 47
 JH290_21400 NONE
 JH290_21395 4928182 .. 4928227 -  -4.5  -4.96848   GGGCCGATAGAAAAA GGTTGCTTGCCTGCAAGCTGC GGAT GCAGCTTGACCGCATGCATGC AGGACCGTCACGACC  81 250
 JH290_21390 NONE
        lepB NONE
 JH290_21380 4926192 .. 4926216 -  -4.3  -4.56597   TCCCGGCCCTAAAAA          CCTATGTTGTA ATT TACAACAGAGC          CAAATGACAATGTTG  72 280
 JH290_21370 4923139 .. 4923159 - -11.1  -2.73681   GATGCAGGTCAAGCA            CGCGACGAT GGG ACCGCCGCG            CAGTCCGCCAGCGTG  63 81
        traG NONE
 JH290_21360 NONE
        tadA 4919404 .. 4919424 -  -3.9  -5.29445   CGGCAACAAGAAAAA            CGCCAGC GTGAGCA GCTGGAG            AGTGCGAGTGTTGCG  88 262
 JH290_21335 4917639 .. 4917664 -  -8.9  -2.86164   CGGTTAAGCACCACA         CCGGGGGCG ACCAGATA CGCCCACGG          CAGAACATCGCCAAT  55 146
 JH290_21325 NONE
 JH290_21320 NONE
        trbL NONE
 JH290_21310 NONE
        trbG NONE
 JH290_21300 4909135 .. 4909156 -  -2.8  -3.51934   GGTGTTGCATAAACA           TGCGTCGG CTGAGT CCGGCGCG            CTGTGCATCGCGGTC  49 177
 JH290_21295 NONE
 JH290_21290 NONE
 JH290_21285 4907896 .. 4907908 -  -9.1  -3.01712   CTGGCTTGCCCAATA                CAGCG GCT CGCTG                CTTTCTCCTGGCCGC  60 471
 JH290_21275 4905619 .. 4905631 -  -6.9  -3.46509   CCTCAAGAAGATCAA                GCGCC GCA GGCAC                AGGCAAGATGGGTAT  57 189
 JH290_21255 4902811 .. 4902838 -  -3.4    -3.695   TTCAAACAGGCGAAA        GCAGGTGTCATTC TCA GAA-GACGACTGC        ACGAAATGTCAGGAG  54 34
 JH290_21250 4901734 .. 4901748 -   -10  -3.01791   ATGCCTTTCCCAACA               GGCTGA GCA TCAGCC               TTCTGGCATTGCACA  62 354
 JH290_21235 4900491 .. 4900509 -  -2.2  -2.72344   GCCGACCCTCAATTA             TCTCAGGG GCA CCCCGTGG             GTTCCTTGAGCGCTT  39 48
 JH290_21225 4898918 .. 4898931 -  -2.3  -4.39347   AAAAAACAGCCAAAA               GTGAG CTAA CTCGC                TGTCAGAAAAGGGTT  65 240
 JH290_21215 4895166 .. 4895179 -  -4.5  -3.93288   CTCCATGCAAGGAAA               CAGCG CTCC CGCTA                TTGACCTACATTCTG  58 473
 JH290_21205 4894306 .. 4894336 -  -9.7  -3.09516   TGGTCGATCATTCAA      GCCTGCGCTGCAAG CACT CTCGCGGCG-AGGC       CGCCAGCGCACATAA  60 294
 JH290_21200 4893354 .. 4893365 -  -2.2  -3.31461   CATCGACGCCTACAA                CTAC GGTC GCAG                 GCTCAAAGCATTGAA  44 455
 JH290_21185 4891076 .. 4891101 -  -6.7  -3.12999   GCACGCCACAGCGAA         TTCGGCGAGGA CTTG CCCGCGCCGAT          TGCAGTGTGGAAACC  53 68
 JH290_21180 4889153 .. 4889190 -  -6.4  -4.82901   GCGTTGGTATAAAAA  GCGGTCAGCAGGG-AG TGATGTGG CTGCCCTGCCGACC-C   TCGTTTTGGTTTTGA  83 64
 JH290_21175 4888469 .. 4888481 -  -3.3  -3.58343   TCGATCACGTGCAAA                GAGCA GCA TGCGC                CACCAGGCCGGCCAC  51 311
 JH290_21170 4887950 .. 4887970 - -11.8  -5.28176   CTGAGGCACAAAAAA            GCCGCCGG GATCT CCGACGGC            TTTTTGCTGATTGGC 100 55
 JH290_21165 4886772 .. 4886805 -  -5.9  -3.04144   GCGGCACCGCCAACA     CGATCCAGAAGCCGGC AGC GCTCGCA-CTGGATCG     CAGGCAGTGGCGGCA  49 241
 JH290_21160 NONE
 JH290_21155 4885887 .. 4885900 -  -8.1  -5.78622   TGAGCGTAAAAAAAA               GCTGC CGCC GCAGC                TGCTAGATCACGCGT 100 33
 JH290_21150 4885191 .. 4885210 -  -5.6   -4.7497   TCCAGTGATGAAAAA            GCCGCCTC GCCA AAGGCGGT             TTTTTCGTTTTCGGG  80 293
 JH290_21145 4883949 .. 4883986 - -19.9  -3.14683   ATAGCGCCCCAGCAA   CACCCGCGCAGG-GCCCA CGC TGGGCACCTGCTCGGGCG   ACAGATACAGGCTGG  95 254
 JH290_21135 4882509 .. 4882537 - -21.9  -3.21276   CCGCTTTCCACAACA        CACGTCGAGCGAT GCA ATCGCTCGACGTG        TCTGCCTGAAGATCA 100 109
 JH290_21115 4878850 .. 4878867 -  -9.1  -2.87132   TCGCGTGCGCACACA             CGCGCCGG CAT CCG-CGCG             TGCGTGGACCGCGCC  56 246
 JH290_21105 NONE
 JH290_21100 4875940 .. 4875971 -    -8   -3.8186   GAGCGCAATGAAGAA      GACTGCGCTCACC GCGCGAT GG-GTGCGCAGTC      GTTTTGATAGCTGCT  65 151
 JH290_21095 4874574 .. 4874594 -  -8.9  -3.01924   CAGCGTTTTGGAACA            CACGCAGCA CGA TGCAGCGCG            GCACGCGTTATCTGC  57 49
 JH290_21090 NONE
 JH290_21085 4872018 .. 4872029 -  -5.8  -3.53012   CCTGTCGCGGCTAAA                GCAG CGCG CTGC                 CGCCCCGTTGGGGGC  54 437
 JH290_21070 4867602 .. 4867625 -   -11  -3.79138   AAGACAGCGAGGAAA          TCGCAGCGAC CTGA ACCGCTGCGA           TGCGATGCCGCTGCG  76 75
 JH290_21050 4860674 .. 4860690 - -10.8  -2.90075   TGGCCTGGAAGCAGA              GCGCGC TGGAT GCGCGC              ACCGCATTGCTCGCC  61 371
 JH290_21040 4859857 .. 4859877 -  -8.2  -2.78384   TGGGCTTTGAGTACA            GCGTGCAG GCGCG CGGCACGC            TGCATTCGGTGATCG  52 172
 JH290_21025 NONE
 JH290_21020 4857129 .. 4857160 -  -2.9   -4.1899   CCAGGGCATCGAAAA      CATGACACTGCGC AACGAA GCACAACGCCAAG       GGCGCCCCGCGCCGT  63 332
 JH290_21005 4853877 .. 4853894 -  -3.3  -3.81575   TCTAAAAAATTAGAA             GCCATCG GCTA CAAGGGC              GGCGGCAGGATGCCA  56 257
 JH290_20925 4838309 .. 4838322 -  -5.9  -3.76224   GCCTGATCCAGCAAA               CGCCA CACA CGGCG                CGACAGACCTCCATG  60 257
 JH290_20905 4834677 .. 4834693 -  -7.2  -3.06915   AGCCACTTGAGCTAA              CGACGC CGGTC GCGCCG              CCGCACCGTCTCTTC  54 194
 JH290_20900 4833299 .. 4833311 -  -7.7  -2.59431   TGCCTGGACAACGGA                CTTGC AGT GCAAG                CGTTGCCGCTTACGC  51 52
 JH290_20895 4831975 .. 4831988 -  -3.1  -3.08173   AGCAAGCCGATGTAA               GC-ACC GCG GGTAGC               CGGTGTGTGTGCCGC  43 42
 JH290_20890 NONE
 JH290_20885 4830957 .. 4830972 -  -6.1  -3.35597   TTGATGCTGCAAACA              CCCTC GCTCTG GAGGG               GCAACGACTTCTGCA  52 206
        proP 4828770 .. 4828793 -   -16   -3.5764   AACGCTACGTGGAAA          CCGGGCAGGG CATG CCCTACCCGG           ACATGCCCGACACCC  83 76
 JH290_20870 4827224 .. 4827234 -  -8.2  -2.62171   GAGACTTCCAAAGAG                 GGCG AAT CGCC                 GAGTGCGCGTGGTGA  53 195
 JH290_20865 4826337 .. 4826388 -  -6.5  -3.04144   GCTGTATCGCCAACA GCTGCGCGAGGCCACCGCCGCACTGG CGG CCAG--CGGCTCCAGCCACGCG-AGC GCTGCCACACCAACA  49 206
 JH290_20800 4806765 .. 4806821 -    -8  -3.29947   CATTTAGCACATGAA GCAGAAGCGCGCGCG-T-GGCCAGGC GTCATGG GAATGCCCCATCGCGCGCGCTCCTAC GAGGCAGTGTGCAGT  58 69
 JH290_20795 4805428 .. 4805447 -  -7.8  -2.71924   CAGCCGGCGTGAAAT            CCACGC-CG GTG CGTGCGCGG            GCGTGCCTGGCTCAT  52 48
 JH290_20790 4803647 .. 4803660 -  -3.8  -3.14132   GTTTGTCTGCATCAA               TGCC CTTCGC GGCA                AGCGCACCGCGGCAT  47 79
 JH290_20785 4802838 .. 4802874 -  -4.2  -3.02263   ATACGCCCGCCAAGA   CGCCCGGCACTGCGCCG TAAG CGGCGC-GCGTTGGACT    GCATGCGGCATGTTG  45 308
 JH290_20775 NONE
 JH290_20770 NONE
        ligD 4798130 .. 4798142 -  -4.7  -3.57462   CACGCCACCGGCAAA                GTGCC GCA GGCCC                ATCATGCATGATCTG  55 79
 JH290_20750 NONE
 JH290_20745 4792599 .. 4792628 -  -8.6  -3.14211   ATCTCCCCGCAGTAA       GGCATGGCCGC ACCTGTCTG GCGGCC-TGCC       GCTGGACAGGTGTTT  58 205
 JH290_20730 4787051 .. 4787075 - -14.3  -3.28712   CTGCGTGCTGCACAA          GAGCCGTGACA TGA CGCCACGGCTC          TTGCGAATCCCTAAT  82 70
 JH290_20725 4786188 .. 4786198 -  -4.6  -3.21912   GCTGGAAGGGATCAA                 CGAC ATC GCCG                 CGCCGGGGGTCAAGA  49 448
 JH290_20710 4780993 .. 4781011 -  -2.3  -3.90112   CGGCGTCGAACGAAA             CATCACG CCCAC CGCGTTG             CATGCGTGCACATCG  54 112
 JH290_20705 NONE
 JH290_20700 4776734 .. 4776750 -  -4.3  -3.40899   AACGGTTCATCAGAA              CGGCCTC CAG GAGCCCA              GCACGGTGGAGCGGT  51 3
        pelA 4775636 .. 4775662 - -15.1  -4.21194   GTTCACCACGTAAAA         CAGCCACCGCC TGGTT GGCGGTGGCGG         CGACGCACTTGCTCA 100 48
 JH290_20690 4771470 .. 4771482 -  -4.1  -3.53012   CGCTGTTGGGGCAAA                CAAAC CGA GTTCG                GCTACTGTCAGTGCC  51 254
 JH290_20680 4770157 .. 4770185 - -10.1  -3.14132   CGCTTTCTGGAGCAA        CGCCGAGCCGGAC CTT GTCCGGCATGGCT        TTCATCAGTTCAACC  64 168
 JH290_20670 4765784 .. 4765796 -  -3.3  -3.05596   CAGTGGCCGATGGAA                CCCGT CTC ACGGT                GGATAGGGCGCTTGC  42 128
 JH290_20660 4763984 .. 4764022 -  -2.4  -3.71848   GCTCTTGATCAACAA  GGAACGGCG-CTGATTC CTAAGT GAATCTGACCCCGTTCT   TCGGCGAGCAGCCCT  52 9
 JH290_20640 4760176 .. 4760190 -  -2.1   -3.7574   TCCAGCACTAAAATA              GTGACC TCTC GG-CAC               GTCCAATTTGGAGTG  52 44
 JH290_20635 NONE
 JH290_20630 4758107 .. 4758141 -  -5.7  -3.97308   TGCAAATACAGCAAA    TGGCCACCGGCGGC ACAGATCA ACCGCCGAC-GCCA     GCAGAAGAAGAAAGC  63 291
 JH290_20610 NONE
        treS NONE
        glgB 4746753 .. 4746800 - -16.8  -2.52795   AAGGCGCGCAATCTA GCAGCTGCCACCGCGCCGGGCC AGCA GGCCGGGCGCGGTGACGGTCGA TCAGCCCTGCGGGGT  79 26
 JH290_20595 4746178 .. 4746190 -  -3.3  -4.96848   GTGGCGAGATAAAAA                CCGCA CGC CGCAG                CGCCCGCGCACAACA  78 436
 JH290_20585 NONE
 JH290_20580 NONE
 JH290_20575 4743142 .. 4743167 -  -6.7  -3.91488   AAGCGTTGCAAACAA         TGCCGCACAGC ATGC GCCCTGCGGCG          TCCAGCAGGTGTCAG  65 146
 JH290_20570 4742638 .. 4742650 -  -4.7  -2.89564   GGTGCACGTCACACA                CGCGG CAA CTGCG                TCAGCGCACGTCCAG  46 26
 JH290_20565 4741306 .. 4741328 -  -9.8  -2.95091   ACTGCAATGGAGACA           GCGCGCTACA TCT CACAGCGCGC           CGCTAACCTTCTCCA  61 70
 JH290_20545 NONE
 JH290_20540 4735518 .. 4735532 -  -5.6  -4.18494   CACCTCTATGCAAAA               TCGCGG ATG CGGCGA               TACAGCGCTTCGATC  67 1
 JH290_20535 NONE
 JH290_20530 4733665 .. 4733681 - -13.7  -3.14132   CGGCCGCTGGATGAA              GGCGGGA GAC TCCCGCC              GGCACTGGCGCTTAC  76 37
 JH290_20525 NONE
 JH290_20520 4730742 .. 4730755 -  -8.1  -3.14132   GCCTGCCCTGACCAA               CGCGT CGCC ACGCG                CCGTCACAAGTGAAT  58 85
        kduI NONE
        kduD NONE
 JH290_20505 4727295 .. 4727307 -  -5.5  -3.93288   TCGGAGTCAATCAAA                CGCAC GAC GTGCA                CTGACTGCCGCATCC  62 185
 JH290_20500 4725706 .. 4725731 - -13.3  -3.36968   CATGTAACGCCACAA         CGTGTAACGCG GTAA CGCGGTACACG          CGCTGCGTGCTCGGC  74 122
 JH290_20485 4722940 .. 4722970 -  -5.3  -3.14132   TCGTTTGTTGAGCAA      GC-GCACGGAACCG GGTG CGGCGCTGTGCCGC       GCTCGCTGGCGCGAG  48 81
 JH290_20480 4720464 .. 4720500 - -16.6  -3.05343   GGCACACCTGCAACA   GCCGC-AAGGCCGCCCC TGTA GGAGCGGCCTTGGCCGC    GATGCGTTACCGATG  84 66
 JH290_20475 4719854 .. 4719886 -  -6.9  -3.02263   AGATCCGCGCCAAGA      TCGCGCAGCTGCA GGCGCAG CGCAGCAGCGCCA      CCCGCAGTGCGGCCG  51 432
 JH290_20455 4715077 .. 4715105 -  -5.2  -2.66634   CAGGCCAGCACACGA       GGCAGCGCGTGCA GCAG CGCACGCAC-GCA        AACGCCCGCGCGCGC  43 51
 JH290_20450 4714688 .. 4714710 -  -2.5  -3.12327   GGTCGAGAGTGAACA           TGCGGCCGA GCTTG CCGGGCGCC           GCGTCAGACGGGCGC  43 64
 JH290_20445 NONE
 JH290_20440 NONE
        egtB NONE
        egtD NONE
 JH290_20420 4708006 .. 4708018 -  -9.1  -3.06261   TGGCAACGGTGAACA                CGCTG CTG CAGCG                CCTGGACAACGACAA  57 384
 JH290_20410 4703488 .. 4703521 -  -2.3  -3.40403   CCGCCTGGATGACAA     CACTGGCTTGCGCAAG CCG CCTGCCCG-GCGAGTG     ATGGCGCAACGAACG  47 166
 JH290_20405 4702429 .. 4702449 -  -4.6  -3.15544   GGGCACGCGCATCAA            GCCGCCAG GCGCG CCAGCAGC            CATGCCCAGGCCGGC  48 1
 JH290_20400 4700935 .. 4700959 -  -8.4  -3.14132   CGCTTCCGGGAGCAA          GCCGGCAGCG TACAC CGCGGCCGGG          TGAGGAAGTAGTCGA  58 359
 JH290_20395 NONE
 JH290_20390 4699791 .. 4699808 -  -4.7  -3.18383   AGTGGCACGGATCAA             GGCCACC AGAA GGCGGTC              AGCCGGGCGATGCCA  48 4
 JH290_20385 4699206 .. 4699229 -  -7.4  -3.66429   AAGAAGCCTCAACAA          GGACGTCACGG GCG CCG-GACCTCC          TGCAGCCGCCCACGG  62 7
 JH290_20380 4697218 .. 4697228 -  -6.8  -2.72344   GCGCAGTTTCAAGCA                 GCAG GTA CTGC                 CGATCAGAGGATCGG  49 29
 JH290_20375 4696504 .. 4696518 -  -9.2  -2.63102   ACTATTGTGACAGCA               GCACGG CCG CCGCGC               AGTGCCGGGAGCGGG  56 76
 JH290_20370 NONE
 JH290_20365 4694574 .. 4694588 -  -2.8  -3.96148   GGTGTCCAGGACAAA               CCGCTA TTG TAACGA               TGCGCGCTGCGCTGC  56 45
 JH290_20360 4692278 .. 4692291 -  -3.7  -3.05384   GCCGCTCCTACGGAA               GCGGG GGTG CCTGC                CTGACGTGCCGGGGC  45 212
 JH290_20355 4691021 .. 4691076 -  -2.6  -4.15044   GGGCCGTCCAAGAAA CTTGCGTCTCGGC-G-CGGGAGCGATG CTGAC CACCGCTTGCGGCCGCCGAG-CAGAAG TTGCTGCACGTGATT  59 61
        glnA 4687063 .. 4687085 - -14.8   -3.9243   GAATGGTGGAAAGAA           CCGGCCGGCA TTG CGCCGACCGG           CGGTGTCATTCACCC  89 264
 JH290_20335 NONE
 JH290_20330 4685166 .. 4685190 - -10.7  -3.83026   CCGGGGGACAGCAAA         CCCGGCGCGG GCACTT CCG-GCCGGG          TCGTCGTGCGGCCCG  79 68
 JH290_20325 NONE
        ntrC 4682128 .. 4682146 -  -5.2  -3.05816   CCACGGCGCATTCAA             CGCGAATG CCG CATGCGCA             CTAGCCCGATACGAC  47 368
 JH290_20310 4680703 .. 4680722 -  -5.6  -4.10429   AATCACTCCTCAAAA            GACGCCGC GGGG GCGGCATG             GGTGCCCACGGCTCA  65 38
 JH290_20305 NONE
 JH290_20290 4676805 .. 4676831 -  -2.8  -2.62616   CCACGCTGCACAGCA         GCGTCAGCGTTC CAC GATCGCCACCAC         GCCCATGCCGCCGGC  39 2
 JH290_20285 4676147 .. 4676165 -  -7.3  -3.17763   GCCACATTGCATCAA             CGCTGGC GTTTT GCCTGCG             GCATTGGCGGCAGAT  56 3
 JH290_20265 4671908 .. 4671948 - -11.2  -3.02324   TGCACCTAAATGACA  TGCGGTACCGCATGGTAA AACTG CTCTCATGCAGTACCGCA  CTCAGGGTACGAAGG  66 27
 JH290_20260 NONE
 JH290_20255 NONE
 JH290_20250 NONE
        secB NONE
 JH290_20240 4668659 .. 4668675 - -15.1  -4.77036   CCGCACCACCAAAAA              GCCCGGC AAT GCCGGGC              TTTTTGTTGTCTTGG 100 66
        poxB 4665535 .. 4665549 -  -5.6  -3.01497   CGATCCGAAAGGAGA               CGTGCA GTG TGCGCG               CAGCGCGGTGTCAGC  49 36
 JH290_20225 4665268 .. 4665279 -  -2.2  -3.09516   CCTTCGATCAGCGAA                GC-GG CCA CCAGC                GCACCACCACCGCGG  41 6
 JH290_20220 4664690 .. 4664703 -  -5.2  -3.05596   CACGCTCGCACCCAA               GCGC GTGTTT GCGC                TGAGTACCCGCAGCA  47 268
 JH290_20205 NONE
 JH290_20200 4662077 .. 4662107 -  -4.8  -3.11459   AACATGATGATGGAA       CGTGTTCTAAAAAT CCA ATTTTCTTAACACG       TTCTCAGCGACGTAT  48 40
 JH290_20195 NONE
 JH290_20190 NONE
 JH290_20185 NONE
 JH290_20180 4655659 .. 4655698 -  -7.9  -3.05596   CACGCGCTCACTGAA  GCCGACTGGGTTG-GCGT GGACG ACGCGCAACGCAATCCGC  TGCCTACGCTGTAAG  54 183
        oleC 4653271 .. 4653297 -  -9.2  -2.89191   CGACAGCGGCAGACA         CTTGCGCTGGCG ATA CGCCTGCGCCTG         ACAGCATCGCCCTGC  58 50
 JH290_20165 NONE
 JH290_20160 4651915 .. 4651952 - -19.1  -4.07568   CTGCGTGCCGCAAAA   GCGCACGGCCCGCCTCC TTGC GGAAGCGGGCCGTGTGA    TCGTCAACCGGCAGC 100 65
 JH290_20145 NONE
        ubiB 4647744 .. 4647760 -  -9.3  -2.56596   CGCGCCACGAATCGA              GGGCCGC GCT GGGGCCC              GCTGCAGGCACTGCC  56 81
 JH290_20135 4646844 .. 4646868 - -15.7  -3.22208   AGAAGCAACAGTCAA          GCCCCTCTCCC GTC GGGAGAGGGGT          TGGGGTGAGGGTACG  83 101
        arfB NONE
 JH290_20120 NONE
 JH290_20115 4643378 .. 4643392 -  -2.7  -3.18582   GATTGGATGGATGAA               CGCCG TGGGG CTGCG               AGATCGCGTGCCGTC  43 146
         dcp 4641051 .. 4641074 - -18.2  -5.10461   GCGACGCAACAAAAA          CGGGATGGCC GCAA GGCCATCCCG           TTTCGATCATCGCCT 100 71
 JH290_20095 4636360 .. 4636387 -  -5.5  -3.37975   ATGCAGTATCGACAA        CGGTTCCTGCA GCATGT TGCGGTAACCG         CACGACATCGCCGCG  52 157
 JH290_20085 4633464 .. 4633500 - -12.9  -3.06796   CGTGATTGCAGGCAA    GGCGTTGCCGTTGCGCG CAG CACGCAGCTGCAACGCG    GGTGTTTTCGGGTGC  71 90
        aceA 4632033 .. 4632052 -   -15  -5.44119   TTCAGCGCAAAAAAA            GGGTCCGG TTTC CCGGACCC             TTCCCCCTCCCGGGG 100 67
 JH290_20075 NONE
 JH290_20070 4628190 .. 4628205 -  -2.5   -4.1899   CTACCTGACCGAAAA              GACCA ATCACA CGGTC               ATCTTTGCCTTCGAA  62 16
 JH290_20060 4626430 .. 4626486 -  -7.8  -2.72344   GGCGATTCGGAAGTA GGCCTGCCGCTGCGGTTCGTCGCCAGC GGAC GCTGGCGACGAACCGCT-CTACGTGGT TATTTCTGCAGCGCG  52 174
 JH290_20035 4618381 .. 4618405 -  -4.1  -3.85539   TATATGCACAGCAAA          CCGCACTCGTG AAG CACAGCCGCGG          CACAGTCAGTGCGCT  58 42
 JH290_20030 4617969 .. 4617982 -  -9.5  -2.72344   GCTCAGCTTCAACCA               GCCGC TCCG GCGGC                CACGGTGCGCAGATA  57 5
 JH290_20025 NONE
 JH290_20000 4613258 .. 4613276 - -13.8  -4.45693   GAAGACAAACACAAA             CGCCGCCA GGA CGGCGGCG             CAGGCAGGACAACGG 100 163
 JH290_19995 4611435 .. 4611451 -  -4.4  -2.52464   GGCTGGCCTAACCCA             GCCG-TC GGGT GATCGGC              GAGCGTTTGCGATCA  41 75
 JH290_19985 4609409 .. 4609426 -  -9.8  -2.98015   GTGAAGCACGAGACA             CGCCGC TACGTG GCGGCG              TAACCGCACACACAC  62 120
 JH290_19970 NONE
 JH290_19965 4605108 .. 4605156 -  -2.2  -3.44051   CGGTCAGCATGACAA TCGGCGTCATGGGCTGGCCGGTC GACG GATCG-CTGGGCCACAACGCCGC ATCGCTCAACCACGC  47 124
 JH290_19955 NONE
 JH290_19950 NONE
 JH290_19945 4602971 .. 4602988 -  -6.9  -3.37164   GGAAAAACATGAACA             CCGGCTA CGTC TTGCCGG              CACTGCCCGGCGGCT  55 12
 JH290_19930 4601210 .. 4601234 - -11.3  -3.06815   ATTGCCTGGAATACA          GCTGTCGGCGC AGC GCGCCGACCGT          TACTGCTGCGAATCA  66 38
 JH290_19905 4596467 .. 4596494 -  -7.7  -5.24551   TCAAAGCAACAAAAA        TGGCGCAGACAC GCACA GCGCC-GCGCCA        CTTACCAACTGCAAT 100 98
 JH290_19900 4594988 .. 4595033 -  -8.2  -3.17212   TGAGCACGCGAGCAA TGCCAATGC-CCGTCGCGCCG CGTAC CAGCGCCGCGGTGCAGTGACA CCGAGCGACGGCATC  58 387
 JH290_19885 4589196 .. 4589222 -  -6.4  -3.49475   GCCATGCGCATAGAA         CCGGCATGGACG ACG CGTACGTTCCGG         TCCCTTTGCAGCATT  57 252
 JH290_19840 4581009 .. 4581029 -  -5.4  -3.54307   AACACCTTCGCCAAA            CAGGCG AATCTGCGG CGCCTG            GTCTGATGTCCCGGC  55 308
 JH290_19835 4578820 .. 4578830 -  -6.8  -3.71378   CATCGCACACGCAAA                 CCAG TCG CTGG                 GAACACCAGCCAGAT  62 125
        clsB 4576493 .. 4576511 -  -5.2  -3.01924   CACCTGGGGCGAAGA             CAGCACCA CCT TGAAGCTG             GAAGACCGCTTCGAC  47 241
 JH290_19785 4565604 .. 4565622 - -13.8  -2.52464   GGGCGCTCCAAGGCA             CGCGCGCC AGT GGCGCGCA             AACTGTGCCCTCTCG  71 89
 JH290_19780 4564425 .. 4564436 -  -7.2  -3.61398   TGGTTTCCGCAACAA                CGGC AACT GCCG                 TGGGCCAGCGGCCTG  58 131
 JH290_19765 4560383 .. 4560415 -  -7.5  -4.57073   TATCGCCTGGAAAAA      GCCGGTGCGTTCGAC GAT GCCTCCCGCACCGAC      GGCCGCGCGATGGTC  79 445
 JH290_19750 4555479 .. 4555498 -  -5.6  -2.57132   GCGCGTGGGCACAAC            CGCTGCGA TGGA TCACTGCG             TCATGCCGAACGCGC  46 26
 JH290_19745 NONE
 JH290_19740 4553355 .. 4553383 - -18.9  -3.04263   ATGCCACTGCGAACA        GCGCGCGCGACTG CAG CAGTCACACGCGC        TGGCGGTGTTAGGCC  91 34
 JH290_19735 4552615 .. 4552669 -  -4.9  -3.33492   GCATGCATCGCAGAA CG-CGGTGCGCATGCCACTGACGATGA GGA TCAGCG-CGGCGGCAGGCGCAGCATCA GCCGCCGGTTGATTT  50 0
        purU 4551546 .. 4551567 -  -3.7  -2.98823   CTGCGGTGAGAGACA           GCTGC-AGTT GCG AGCTTGCAGC           GCTCCGCTAGCGAAA  45 32
        msuE 4546125 .. 4546154 - -13.5  -2.60723   GGATCGGCAAGCAAT       CCGCCAACGGACC CGGT GGCCCGCCAGCGG        CGTGGTGGCAAGCCA  71 63
 JH290_19705 NONE
 JH290_19700 4543967 .. 4543993 -  -5.1  -3.68619   GCTAATCCATCGAAA        GC-ACCAGCGCA CTAC CGCGCTGACAGC         TCTGCGCGAATGATG  58 10
 JH290_19695 4542449 .. 4542483 - -14.4  -3.10522   ATTGCATGCAAGACA     TCGAGTTGCGCGTT CGCCAGC AGCGCGCAACTCGA     CAATCAGGACGGCGA  78 116
 JH290_19680 4538553 .. 4538584 -  -3.7  -3.74693   CCGCAGGCGACCAAA     CGAGC-GCTGAGGCA TACA CGCC-CAGCAGCCCA      CTATCGAAGGACCAA  56 175
 JH290_19675 NONE
 JH290_19670 4535188 .. 4535219 -  -9.4  -3.23216   CGGGACCACGATCAA      CCCGCTCGCGCCGCA GCG TGCAACGC-AGCTGG      TAACCACGGCCTGCA  61 268
 JH290_19600 NONE
 JH290_19595 4526214 .. 4526224 -  -6.8  -3.60098   ATGCCTGACTGCAAA                 CCCA GCG TGGG                 GTGGCTTTTTAGAGC  59 38
 JH290_19580 4523415 .. 4523433 -  -8.8  -3.62597   CGCATGCGGCAACAA             CGCCGC GCTGCAT GCGGCG             CCTAGGTTGGCATGT  65 194
 JH290_19565 4521228 .. 4521248 -  -2.6  -3.93236   TAGCAACGCGACAAA           CGA-TCCAT GCAA ATGGAGCCG            CTGACAAGACGTGGC  54 24
 JH290_19560 4519455 .. 4519499 - -11.6   -3.1577   AGGCAATAGGCAATA GGCAATGC-CC-G-CGGAGCG GTTCAG CGCTCCGGCAGGCGCATCGCC ACCACCGCGGCAGCA  70 1
 JH290_19555 4517713 .. 4517732 -  -7.8  -3.70149   TCCAGACGAGGCAAA            GCCCTTGC TATG GCAAGCGC             ATGAGGGCGTGATCG  65 364
 JH290_19550 NONE
 JH290_19545 4516291 .. 4516309 -  -2.2  -3.53012   TTGCCTTCTCCGAAA             TTGCCGGC ATC ACCGGCGC             TGGAACACGTGGACG  47 16
 JH290_19540 NONE
 JH290_19535 4513533 .. 4513550 -  -7.7  -2.52543   ACGCGCGGCAACGCA             TCGGCCGC GAG GCGGC-GA             TGCAGGCAGCGGCCG  49 466
        pobA NONE
 JH290_19520 4510825 .. 4510839 - -12.8  -2.90615   AGGTGGCCGAAACCA               CCGCGC TGG GCGCGG               CCTACCTGGCGGGCC  66 246
 JH290_19485 NONE
 JH290_19480 NONE
        pcaF 4500196 .. 4500211 -  -4.6  -3.34715   CATGGCGCTCAAACA              CGCTCG ATCG CCAGCG               CTACGCCCTGGCCAA  50 3
        pcaH NONE
        pcaG 4498774 .. 4498789 -  -3.2   -3.9122   GACCTGTGCAAACAA              CTGCCT CTTC AGGCAC               GCGTTTCAGTGCACG  56 47
 JH290_19460 4497210 .. 4497220 -  -2.4  -3.92522   CGGCAACTGGAGAAA                 TGCC ATG GGCC                 ACCGTCAGGGGGAAG  54 30
        pcaD NONE
        pcaC 4495831 .. 4495847 -  -5.1   -3.4072   CATCTTCGATCACAA              CACGG TCTTGCG CCGTG              CACGCGCCCTGCCTC  53 170
 JH290_19445 4494529 .. 4494550 -  -2.2  -2.71364   GGACCCGCTCAAGCA           GGCGGCGCA GCGCT TGGGC-GCC           CTGCTCAGCTGAGCG  39 53
 JH290_19435 4492642 .. 4492667 - -10.5  -2.89921   AGCAACCTTTAGACA         GCAGCGTTAGCC GCT GG-TAACGCCGC         AGCCACACCTGCTGC  61 51
 JH290_19430 4491429 .. 4491459 -  -7.6  -3.05384   GGCGCGCGGACGCAA      GTGCTAGCTACGC AGCAAA GCGTGGCT-GCAC       TGGCAGCAGCCATTG  54 2
 JH290_19410 NONE
 JH290_19405 4485652 .. 4485669 -  -3.3  -2.79312   AAAGCCGCCATCATA             GGC-CCGG CAT CAGGCGCC             CTGCACCACCAGATC  40 17
 JH290_19400 4485087 .. 4485142 - -27.6  -2.73334   ACCAACCACATAGGA GCGCGCTCGCGCGCGATGTGGCGTTA TCGG TATCGCTTCATTGCGCGCGAGCGCGC TCCTACGCAGTCCAG 100 81
 JH290_19360 4476737 .. 4476754 -  -5.5  -3.14132   GCGCCCGCGCAGCAA             CCGCG GGCCGGAG CGCGG              AAAGTGGTTTGGTTG  51 306
 JH290_19350 4475336 .. 4475353 - -12.7   -5.4833   GCAGGCAACAAAAAA             CCCCCGA TTTC TCGGGGG              TTTTGGACTTTCTTG 100 62
 JH290_19340 4473460 .. 4473475 -  -4.6  -3.28791   ACCCCTCTGTTACAA              GTACCG CAAT CGGTCC               AGATACTAAGGTATC  50 49
 JH290_19325 4469497 .. 4469515 -  -4.4  -3.14132   CTCCTGCGCGAGCAA             GGGCGAAG CGT CGTCGCAC             GTTGTGAGGTTGACG  47 82
 JH290_19310 4464414 .. 4464465 -   -16  -4.09864   ACGCATCCCTGAAAA CGCGA-TCGGCCCGTTTGCAATGGC AGT GCTATCACAAACGGGCCGACTCATG TCTGGTGCGCCCGAA 100 316
 JH290_19300 4460967 .. 4460981 -  -5.6   -3.1552   GCTGACGCATTAACA               GCGCAC CAC ACGCGC               ACGCCAGCTCAGCCT  51 34
 JH290_19285 4454042 .. 4454060 -  -4.5  -3.17763   GCCAGAGGCTAGCAA            GCGCAACC CGCA GGC-GCGC             AACCCATGATCGTTA  47 84
 JH290_19280 4452119 .. 4452153 -  -2.7  -3.61398   CGCGGCTTCGAAGAA    CTGTTC-GAGCGCGAG GCCA CCCGCACCCAGCGCAG     CGGGCAACCGCTGTG  49 425
        glgA NONE
 JH290_19265 NONE
        treZ NONE
 JH290_19255 NONE
        treY NONE
 JH290_19245 NONE
        glgX NONE
 JH290_19235 4437053 .. 4437063 -  -2.4  -3.57144   GGCGTTACCGGTAAA                 GCCC ATC GCGC                 GCAAGTGCGCTCCTA  49 252
 JH290_19225 4434012 .. 4434038 -  -5.9  -3.22388   CAGCCAACTGACGAA        TGCGATGCCAAC CCTT GCCG-CATCGCA         CCGCTGTCATGACTG  51 99
 JH290_19220 4433147 .. 4433172 - -17.6  -3.14132   GTGGCGGTGCAGGAA         CCCGCGCAGC GCTGAG GCTGCGCGGG          GTCTGTCACGGGCCG  89 210
 JH290_19210 NONE
 JH290_19205 NONE
 JH290_19200 4426340 .. 4426389 - -12.2  -2.82516   TTGTTGACCAGCACA TCGATGCGGCCCGCGCGGGCGATG ATGC CATCGACCGCACG--CTGCACCGA AGCGGCATCGCGGAT  66 331
 JH290_19190 4424958 .. 4424988 -  -6.9   -4.7254   ACCGCCCAGCAAAAA      CGC-GCTGGCGCAAC AGC GTCG-GCCAGCCACG      GCCCGCTCGAACCGC  81 279
 JH290_19150 4411682 .. 4411697 - -10.4  -2.73243   ATGTACGCGTCAAAT              TCGCCG GACG CGGCGA               CCGGATGGCGATGGG  60 325
 JH290_19145 NONE
 JH290_19140 4409417 .. 4409434 - -14.1  -5.07486   CACCCTCAACAAAAA             CCCCCGC ACTG GCGGGGG              TTTTTGTTGTAACTC 100 56
        hppD 4407254 .. 4407264 -  -4.6  -3.53091   ATCCCGGCTGTCAAA                 GCAC CCC GCGC                 TTCATCTGATCGCGC  53 10
 JH290_19125 4406486 .. 4406513 -  -2.6  -2.59564   CCTCGACCGCAGAAG        GCTGGGCTTG GAGTGGAT CAAGCCCCTC         TCCCGTCGGGAGAGG  38 15
 JH290_19120 4404922 .. 4404954 -  -6.9  -3.14564   GCAGCTGGCGATGAA      CCCGATGGATCCG ACGTAAA CGTAGCCACCGGG      TGTCGTCCGCGTTTT  53 209
 JH290_19115 4404295 .. 4404319 -  -4.1  -4.15654   GAAGAAGAACAACAA          CGGCAGCGGCG GCG CGCGACCACCA          ACGCACGCCTGTATC  61 391
 JH290_19105 4402956 .. 4402966 -  -2.4  -3.96999   CGACATGCAAAAAGA                 GGGG CTG CCGC                 CGGCGCAAGGCGATG  56 212
 JH290_19070 4395869 .. 4395879 -  -4.6  -3.21726   GGCCACAAGATCGAA                 GGCC GCA AGCC                 GAGCTTTCTGACCGA  49 161
 JH290_19060 4394928 .. 4394950 - -11.9  -3.46914   ACGATGCACGAAAGA           GCCGGCCGG CCTGT CTGGCCGGC           TTTTTTGTATCTGCC  74 167
 JH290_19030 4388857 .. 4388880 -  -9.4  -3.54424   TCTGATCCGGCGAAA          GGGCCTGGCC TGAG GGCTCGGCCC           TGGGTGACATATTCG  68 405
 JH290_19020 NONE
 JH290_19015 4386289 .. 4386303 -  -4.2  -3.09635   ACCCGGAGGATGGAA               GTCCAT AGC AGGGAC               GACGGGCGGAGGCAG  45 260
        yegS 4385108 .. 4385160 -  -2.6  -2.87211   ATGTGTGTCGACACA GGCACCCTCACCCCAACCCCTCTCCC AAA GGGAGAGGGGCTTACA-GCGG-TGCG TTGGCGGTTGCTTCG  40 103
 JH290_19005 4383293 .. 4383303 -  -2.4  -3.40403   GCCCGTCCATCACAA                 CCCC TTG GCGG                 CCTGGGCAACCGCGC  47 9
 JH290_19000 NONE
 JH290_18995 NONE
 JH290_18990 NONE
 JH290_18985 4379965 .. 4379999 -  -2.6  -3.49065   GTAAGAAGAAAGACA     TCAGGCGGTGCGCGCA GTG TGCGGGGCCAGCGTGA     CCGAGCAAGCCGCGT  47 85
        trpD 4378812 .. 4378865 - -15.4  -3.03441   CATTATCGGTCAAGA TCATGGCGGCGACCTGACCTGC-GCGC GCA GCGCAGCATGCCAG--CGCCGCCGTGA GGGTGCCGGCCAGCG  81 57
        trpC NONE
 JH290_18970 4377007 .. 4377026 -    -7  -3.60818   GCAAAACCGGCCAAA            CGCTGCGC CAGA GCGCTGCA             TATCGCCTTAGCGAA  59 266
        speD 4375180 .. 4375207 - -19.2  -6.24157   ACGGACAAAAAAAAA        GCGACCCGGTGT CTGC ACACCGGGCCGC         CGTCGGCTATGGAAC 100 124
 JH290_18955 4374674 .. 4374704 -  -7.5  -3.05384   CGCCGCCTGACCCAA      TC-GCGGCGCATGC CTCG GCGCACGCCGCTGA       AGCAGAGCCCCCTTT  54 149
        rplM NONE
        rpsI 4372788 .. 4372822 - -18.6  -4.19817   GTGATGTACCCAAAA     CGACAAAAGCCCCGGC ATT GCCGGGGCTTTTGAAG     CATCCCGGCGAACCG 100 62
 JH290_18925 NONE
 JH290_18920 4370807 .. 4370817 -  -2.4  -3.65522   CACCTACGCCAACAA                 CCAG ACT CAGG                 CAGCGCTGGCGAATC  49 21
         bfr 4370085 .. 4370107 -   -17  -2.81312   AAGCGACTCACCACA           GCAGCCGCAG GAC CTGCGGCCGC           CCTCAGCGCGTTCAG  84 37
 JH290_18895 NONE
 JH290_18890 NONE
        erpA 4363072 .. 4363089 - -10.5  -3.07935   ATCGCACCGACCCAA             CCCCGGC TAGC GCCGGGA              TGCGTTCAGACGCTG  62 31
        nudC 4362062 .. 4362078 -  -4.3  -3.07816   GCGCTACGCACGTAA              TGCTGCG GTG CACCGCA              ATCGCGGGCGTTCAC  45 66
 JH290_18875 4360953 .. 4360978 -  -4.7  -3.14344   GACGGCGCGGAGGAA         CCGGAATATAC GTGG GTACATGCCGA          TTCCGAGCACCGGCC  48 136
 JH290_18870 4360713 .. 4360744 -    -8  -3.07935   AGTTTACCGATGGAA      GCGGATCTTCGCTG ATGT CAAAGAAGATGCGC       TTGAGCTTTCGATTA  53 180
 JH290_18840 NONE
 JH290_18835 4354704 .. 4354726 - -10.5  -2.74523   CGATGGCGAACACGA           CGCCGGCAT TGCCC AGGCCGGCG           ATTACCTGCAGCGCA  57 472
 JH290_18810 4348361 .. 4348394 -   -11  -4.42386   TGGGGATCGAGAAAA    CCG--GTCGCTGCGCG TCAG CGCGCAGCGGCGTCGG     CCAGGCCGGCGCGCA  95 6
 JH290_18805 4346271 .. 4346302 - -13.8  -3.81951   GGCCACAGCAGGAAA      CAGCTCA-CGCACAG CAG CTGTGCGGTGAGCAG      GCGCAATGCATGCGT  84 280
 JH290_18795 NONE
 JH290_18790 NONE
 JH290_18785 4342642 .. 4342655 -  -2.3   -2.8372   CACGCGCGATCAAAC               GGGCA ATCA TGTCC                ACTCCAATGCGCGCA  40 18
 JH290_18780 4342008 .. 4342025 -  -3.4  -3.06133   CAACTGCCCACTGAA             CGCATA CGGATT CATGCG              CGCGCCTCCAGCTGA  43 19
 JH290_18775 4340685 .. 4340697 - -10.5  -2.93991   GCGAAGGCAATCAGA                GCCGC GCC GCGGC                CATGCTGGGCATTCA  59 376
 JH290_18755 4337550 .. 4337582 -  -8.3  -3.01712   TGGTGCTGGCCAATA      TCCTGGCCACCGCAC TGG ACGCGCTGGCCGAGA      CCCTGGCCGCGCGCC  55 188
 JH290_18745 NONE
 JH290_18740 4334738 .. 4334753 - -11.8  -5.06414   GCTGGCCAAGAAAAA              GGCGGG GAAA CCCGCC               TTTTTCGTGTCTGCG 100 424
 JH290_18710 4329800 .. 4329814 -  -7.8  -3.71672   CCTTAGCAAAACTAA               GGCACC AGA GGTACC               TACCAAGCCACAACA  65 137
 JH290_18705 4329184 .. 4329227 - -13.2  -4.03234   CCGCGCGCACAGAAA CGCCGACACGCAG-CAGTGGA CCA TCCACTGGCGGCACGTCGACA CCATTCAGTCGCCGG  86 328
 JH290_18685 NONE
        groL 4321286 .. 4321303 - -14.1  -5.61596   ACGCCCACAAAAAAA             CCCCGCC TTTC GGCGGGG              TCCTTTGTGATGCAA 100 57
 JH290_18675 4319926 .. 4319953 - -21.4  -2.89683   AGTGGAGCGCACACA        CAAGACCCCGCC TTTG GGCGGGGTCTTG         TGTGTGATGCAACAG 100 177
 JH290_18660 4312024 .. 4312066 - -19.9   -3.1372   CATGTGGCATCAACA CCGCACCACACGCCGCGGT GCAAT ACCGTGACGTGCGATGCGG CACCACCTTCACTCA  95 38
 JH290_18650 4310216 .. 4310234 -  -5.9  -3.20858   GATCAGATCGATCAA             CCCACCG GCCGG CGCTGGG             CGGATCTTTTACAGA  51 278
 JH290_18640 4308677 .. 4308698 -   -13   -5.4505   GGCGGCAACAAAAAA           GCCGCCAG TGTGCG CTGGCGGC            TTTTCGGGAATGCTG 100 355
 JH290_18635 4307183 .. 4307195 -  -4.7  -2.69964   GTGCCAACGAGATTA                TCGCC ACC GGCGT                GCAAGCACTTGTTTG  44 376
 JH290_18620 4302314 .. 4302327 -  -8.1  -3.89055   ACAGACCGCGACAAA               CGTGG TTTC CCACG                AACTACATGCACTGG  71 153
 JH290_18615 4299221 .. 4299248 -   -17   -5.4833   TCAGGCAATAAAAAA        GCCCGCTTGCAG CGAA CTGCCAGCGGGC         TTTGCTCCCTCCCCC 100 163
 JH290_18600 NONE
 JH290_18595 NONE
 JH290_18590 4295525 .. 4295535 -  -8.2  -3.05844   CCGCCCAGTTCAACA                 GGCG CTG CGCC                 AGCTATGTCGCGATC  57 74
 JH290_18585 4292661 .. 4292671 -  -8.2  -2.78596   CAGCGGCGCATCACA                 GCGC GCC GCGC                 AGGGTCACCATCACG  54 10
 JH290_18580 NONE
 JH290_18575 NONE
 JH290_18570 4290304 .. 4290337 -  -6.5  -2.71364   CTACCCTGGCAATGA     CGCACCCGCTACGCA TCTG TGCGCTGCGCTCGCG      CTAGCCGAGCCCCAG  49 26
        glnE 4287233 .. 4287248 -    -9   -3.7108   ACCCTGACACGTAAA              TCGCAC GGCA GTGCGA               GGCACGCGGGCTGCG  71 104
 JH290_18530 NONE
 JH290_18525 4280008 .. 4280037 - -20.9  -3.87815   GGTCACGCGCACAAA       CAAAAAGCCCGCC AATT GGCGGGCTTTTTG        TATCCCACACATCGG 100 79
        mdcA 4276304 .. 4276320 -  -4.3   -3.4285   CCATCGAAGCGATAA              CGCAGGG TTT CCATGCA              CTACCCCTACCAGTT  51 32
 JH290_18505 NONE
 JH290_18500 NONE
        mdcE 4273939 .. 4273967 -  -5.8  -2.90075   CTGCCCGTAACCACA        CCAGGGCGTGGC GGCCG GCCATGCTCAGG        CCTCGCCCGCTGCCA  48 21
        mdcG 4273149 .. 4273175 -  -3.7  -2.71712   GCTGCTGCTTGAAAT        GCCA--GGCCTTG ACG CTAGGCCGATGGC        GACCGAGGACAGACG  42 169
        mdcB 4272126 .. 4272139 -  -3.8  -3.55444   CCGGCACGCTTGAAA               GCTG TACTGC CAGC                AGTGCGGTGCGCATG  53 42
        mdcH 4271016 .. 4271036 -  -4.6  -2.63301   GATACGCGTACAGCA            CGGATGGC CGCCC GCCACCCC            AGGGTTACTACCTGT  43 61
 JH290_18475 4269574 .. 4269600 - -12.2  -3.33696   CGTCGTGGCAAGGAA         GAGGGCGCCCAT TCT ACGGGCGCGCCC         CCCTGCCCTGCTGGC  72 52
 JH290_18470 4268617 .. 4268643 -   -10  -4.66537   TTTGCCAAGACAAAA         GGAACTCGCGCC GCA GGCGCGAAAGCC         CTGCACTTGCCGTGC  95 210
 JH290_18445 NONE
 JH290_18440 4262048 .. 4262063 - -11.8  -5.12971   AACAGGCAACAAAAA              CGCCGG CAAG CCGGCG               TTGTGTCGAAGTGCT 100 94
 JH290_18435 4260625 .. 4260643 - -13.8  -2.52464   GGGCGCTCCAAGGCA             CGCGCGCC AGT GGCGCGCA             AGCCGTGCCTTCTCG  71 128
        aceE 4257500 .. 4257528 - -10.3  -4.68908   TCGACCTAAAAGAAA        GGGCAAGGACAAC ATC GTTACCTTTGCCC        CAGACTCACTTCTAG 100 53
 JH290_18425 NONE
 JH290_18420 NONE
 JH290_18415 4254075 .. 4254087 -  -3.3  -3.05596   CAGTGGCCGATGGAA                CCCGT CTC ACGGT                GGATAGGGCGCTTGC  42 186
 JH290_18405 4252405 .. 4252415 -  -2.4  -2.63357   AATGACTTCAAAGAG                 GACG GTT CGAC                 TTGATAATTTATAGA  38 128
 JH290_18400 NONE
 JH290_18395 NONE
 JH290_18390 4250551 .. 4250566 -  -7.5  -3.14878   TTGTCGAAGCCAAGA              CCCGC CGCTTT GCGGG               CATCAGGCCCGCTCA  54 145
 JH290_18375 4247784 .. 4247832 - -11.5  -3.20573   GCATCCACATGAACA GCGTCGACACCGGCTGGGTCACC GAC GAAGATCCGGCCGACATCGCCGC GCTCAAGGTGCAGCA  66 315
 JH290_18365 4244548 .. 4244566 -  -5.9  -3.57263   AGGCGCAGCCTGAAA             GCCGCCT TCGCC ATGCGGC             CCAGCACGCCCTTCG  57 301
 JH290_18355 4242803 .. 4242830 -  -7.6  -3.27771   GCGACAAGATGAAGA        CCGCGCCAGACCG CAT CGTGCTGGC-CGG        CATGATGGCCCGTGT  56 426
 JH290_18305 4234214 .. 4234225 -  -2.2  -2.51173   ACGAACCGCATCAAC                GCGT CCGC ACAC                 CCAACAAACCAATAC  37 9
 JH290_18300 4233581 .. 4233591 -  -4.6  -3.53012   TGGCGTGGTCGGAAA                 GCGG CAA CCAC                 GACAACCGCGGCTAC  52 506
 JH290_18285 4227923 .. 4227942 -  -5.6  -3.53012   GCGCCGCTGCGCAAA            GTGTGCCGC ACT GCGGCGC-C            ATTGTCGCATTGCAC  55 58
 JH290_18280 4227283 .. 4227305 - -13.5  -2.97825   AGCAATAACAGCAGA           GACGACTGC GCACT GCAGTCGTC           ACCACGCGCCCGGTG  75 311
 JH290_18270 4225877 .. 4225906 -  -9.9  -3.77832   TCTCAAACCGAAGAA       GC-CAGCGGCCGGG CAG CCCGCACGCTGAGC       GGGGGCGGCCGAACT  74 213
 JH290_18260 4224519 .. 4224532 -  -2.3  -4.08216   GCAGTCGTTCGAAAA               GAACG CCGA CGTGC                TGTGGCTGCGCACGC  58 416
 JH290_18250 4222515 .. 4222552 -  -7.8  -4.74453   CAATACAGCGAAAAA  GCCTTCC-TGCTCCCG-CG CGA CGACGCG-GCATGGAAGGC  GTACGTGGATCAATG  85 246
 JH290_18240 4221075 .. 4221087 -  -9.1  -3.39327   TGTCTAGAGCGACAA                GCGCT TTC AGCGC                CGCTAGTTGATCTCG  63 402
        cycA NONE
 JH290_18215 4213396 .. 4213427 -  -2.2  -4.39998   TATCGATACAAGAAA      CGCGC-AACCAACCG GCA CTACTGGTTAGCGCT      AGCTGGTCGATTACC  65 101
 JH290_18185 4206675 .. 4206708 -  -8.8   -3.2964   AAAGGGGGGTGATAA    GCG-GGCGTCGACGCC TTGG GGCGCCG-CGCAACGC     GCAAATCTAGCGGGC  60 114
 JH290_18180 4205144 .. 4205166 -  -3.3  -5.47399   GCAACTTTAAAAAAA           TGGACGTCC CTTGC GCACGTCCT           TGCTCGGCAATTACG  91 488
 JH290_18160 4197226 .. 4197238 -  -6.2  -3.33696   GTTGCGTTGAAGTAA                CGGC CAACC GCCG                CGCCTCGCATGCGCT  52 403
 JH290_18140 4189584 .. 4189594 -  -2.4  -3.01712   CGCCCGCCGGGAACA                 CCGG TGA CAGG                 CAGGCTCAGGCCTGT  41 215
 JH290_18135 4188429 .. 4188441 -  -4.1  -3.15544   CGTGACGGTGACCAA                CCTGT TCG ACAAG                GTTTATTACCGCAAC  45 149
 JH290_18125 4184103 .. 4184131 -   -11  -3.34962   TCGGAGACTGCAGAA       CATGCGCGTG-GC AGTA GCTCACGCGCCTG        GGATGCATGCACCGA  69 320
 JH290_18120 4181769 .. 4181793 -  -7.8  -2.70525   GTTCGTTAAAGGAAC          CGAAGGCCAC CGTTT GCGGTCTTCG          CCCCTCCCGACGAGG  52 110
        mdoH 4179559 .. 4179589 -  -7.5  -2.62184   GCGCGCTGCACAGGA      CGCCAGCAGCGCGG GGGG CTGC-CTGCCAGCG       AGCGCGGCCGCGGCG  51 59
 JH290_18110 NONE
 JH290_18105 NONE
 JH290_18100 NONE
        hemC 4175857 .. 4175880 -  -6.6  -3.61398   GCGCGCTTCGAACAA          GCGATCGGCG ATGC CGCCGATGTC           TTGGGCGGGGCTGCG  59 193
 JH290_18085 4173375 .. 4173404 -  -9.2   -4.2558   GAGCCGCGATCAAAA       CGACTGCGCAGCC GCCAG GGC-GCGCGGCCG       GTGCTCGAAACCGGC  83 120
 JH290_18070 4171687 .. 4171726 -  -5.6  -4.15044   GGGTTCCCTAAGAAA  GCGAGCCGCCGGACCG-TA ACA TAGCCGTTCGGCGGCTTCC  CCTGCCGAAGGTCAG  67 37
 JH290_18065 NONE
 JH290_18060 NONE
 JH290_18055 4167527 .. 4167547 -  -7.5  -2.62983   TGTATGCCGACATCA            GCGCATTCT CCA AGGACGCGC            AGGCCTTCTGTACGC  50 246
 JH290_18045 4163826 .. 4163843 -  -4.1   -4.5528   CAAAAGGAACCAAAA             CCGCTGTC GCC GAC-GCGA             TCCGGTGCGGTGAAG  72 488
 JH290_18040 4163084 .. 4163110 -  -2.8  -3.41013   GAAGTATAGCCAGAA         CACCCTGACTGC CGT GCGCTCAGTGCG         AGGCGGGCGTTTGCA  49 18
 JH290_18035 NONE
 JH290_18030 NONE
 JH290_18025 4161206 .. 4161244 -  -7.4  -3.15249   CAGATGCGCCAGGAA  GGGCTCCACCGCAGACA ACGTTG CATCTGCGCCGG-GCCC   GGTCGTCGCTGTCGG  56 78
        xerC 4159978 .. 4160024 -  -2.9  -4.05788   TCCTGTCAAACGAAA CG-AGGTCATGGCGGTCTTCCA GAGG TGGAAGCGCAGCGTGACCCACG CATGCCGGCCCTGCT  58 337
 JH290_18015 4159483 .. 4159508 - -10.5   -3.6502   GAGGCTGCATGCAAA         CGCCTAGCCGAA GAT TTCAGC-AGGCG         CATCGACCGCAGTGC  70 3
        hslV NONE
        hslU 4157133 .. 4157151 -   -16  -5.40474   ATCGCCGCAAAAAAA             GACCCGCC AAC GGCGGGTC             TTCTTACAACTGACG 100 76
        ubiE NONE
 JH290_17970 NONE
 JH290_17965 4148685 .. 4148711 - -13.7  -4.01902   AGACCGATGAAACAA         CGGGAGGGCGT AGGCA ACGCCCTCCCC         GGCCATTACGGCTGC  90 69
 JH290_17960 NONE
 JH290_17955 4146461 .. 4146475 - -11.4  -3.28791   AGCCTGGCCGGACAA               CGCCAG CCG CTGGCG               ACATGGGTGGCCGGT  69 296
 JH290_17950 NONE
 JH290_17945 4142108 .. 4142132 - -11.4  -3.08471   GACAATCGGAGGGAA          CACCGCGCAC CCCTT GCACGCGGTG          GATGACGCACTTATT  66 36
 JH290_17940 NONE
 JH290_17935 NONE
 JH290_17930 NONE
 JH290_17925 4136828 .. 4136840 -  -6.2  -2.87132   GCGGCCCTCCAGAGA                CCGC CGAGC GCGG                CTGGTGCTGACGCCC  48 82
 JH290_17910 4131276 .. 4131301 -  -3.1    -3.615   AGCGTTAGACAAACA         GGGCTGTACCG CAAT CGGTCAAGGCC          GAAGGCCGGGACACG  51 82
        mreC NONE
        mreD NONE
        mrdA NONE
        rodA NONE
 JH290_17885 4125830 .. 4125841 -  -5.8  -2.85351   GTCTTCCAGATTACA                GGGT CAGC ACCC                 GCTGACTGTCAGGAA  48 103
 JH290_17880 NONE
 JH290_17875 NONE
 JH290_17870 4119811 .. 4119825 -  -7.8  -2.62263   ATGCCGCCGACATTA               CCCTGC CTC GCAGAG               GGCCATCCAACACAG  51 63
 JH290_17865 4117982 .. 4118012 -   -19  -2.62184   CCTCCCCGTACATCA       CCAGGTGCGGCCAG CTT CCGGCCGTACCTGG       CTGGGCTACGTCGTC  87 120
        mltB NONE
 JH290_17855 NONE
 JH290_17850 4113906 .. 4113921 - -11.8   -5.4833   CGATTCAACAAAAAA              GCCGGC TTTC GCCGGC               TTTTTTGTTATTCGG 100 33
 JH290_17840 NONE
        lipB NONE
        lipA 4110457 .. 4110485 - -23.9  -2.62184   CTGGCCCGGATACGA        CACGGCCCCGCGC ACT GCGCAGGGCCGTG        ATGCACACACCGATG 100 50
 JH290_17825 4108055 .. 4108075 -   -14  -4.85782   CGCCCCAAAAACAAA            CGCCACCG ACAAG CGGTGGCG            TTGCTCACCCATCGA 100 53
 JH290_17815 4106195 .. 4106247 - -27.9  -2.71144   CACGCGCTTCAATCA CGGCTTCGCAGGCATCGGCGCAC GGAGTGA GCGCGCCGATGCCTGCGAAACAG CCGGTAATCACGGCG 100 33
 JH290_17805 4104012 .. 4104033 -  -3.7  -2.63079   TGTCGAGATAATGCA           TGACG-GAAG CTC CTTCGCGTCG           GGAGGGCCGGCGGTC  41 65
 JH290_17800 4102613 .. 4102629 -  -2.1  -2.57344   CATCCGCCTCACAAC              CGGGCAG CGT CTGCATG              TGCACGCACCTGCTC  38 2
 JH290_17795 NONE
 JH290_17790 4100389 .. 4100438 -   -10  -2.88999   CCGGCACAGAGCATA GCCGCAACCCATGTGCGCGCGG TGTCGCGT CCGC-CGCTCA-GGGCTGCGCC GGTTCATCCATCGGC  61 13
 JH290_17785 4099572 .. 4099587 -  -5.4  -2.74144   CGCGGAGCGTGAAAT              GCA-CCG TCA CGGCTGC              GTTGCGGGCTCGCTC  44 16
 JH290_17780 4099033 .. 4099051 - -17.4  -4.64861   CGCGGGCAAAAGAAA             GCCCCGGC AGG GCCGGGGC             TCGTGGTGTTCAGTC 100 49
 JH290_17775 NONE
         gnd 4096611 .. 4096641 - -15.4  -2.90075   TGTTGTTGAAGCAGA       CATGCATGCCACGC CAA GCGTGGCGCGCACG       TTCGTGGCCGGATCA  79 38
 JH290_17760 4094876 .. 4094899 - -14.6  -5.64274   CCACGCACAAAAAAA          GGCGCACTCC CGTA AGAGTGCGCC           TCGCGTCGGGCAGCC 100 78
 JH290_17755 NONE
 JH290_17750 NONE
 JH290_17745 NONE
        folK 4089886 .. 4089896 -  -8.2  -3.01712   CCTGTGGCCGGAAGA                 CGGC AAG GCCG                 ACGCCGCCAAGCAGG  57 184
 JH290_17730 NONE
 JH290_17725 4087186 .. 4087204 - -10.2  -2.65264   GCACCAGCCACAGCA             TGGCCCTG CAA CCGGGCCA             GGATGCGTTATGTCA  57 479
 JH290_17715 4085034 .. 4085090 - -13.2   -3.9644   CTGGCAACAGAAGAA TGAAGGCGTGGATGCAGCGCGGAGCGGC CAGAT GCCGCTCCGCACTGC--CCG-GCCT-CA GCAGGGGCGGTCGGC  86 23
 JH290_17710 4082297 .. 4082323 - -19.4   -4.2803   CACGCCAATGCAAAA         CGCCCGCCGTGC GAG GCAGGGCGGGCG         TTTGCATTCATCGGC 100 53
 JH290_17705 NONE
        gspD NONE
        gspE NONE
        gspF 4076613 .. 4076632 -  -9.2  -3.02829   GAGACTCTCCGAATA            CGCGGCTG CCAT CAGCCGAG             TGCCAAGGTGTTGAA  60 17
        gspG NONE
 JH290_17680 NONE
        gspI NONE
        gspJ NONE
        gspK NONE
 JH290_17660 4072570 .. 4072600 -  -3.8  -3.14132   CGCTGTTGCCACCAA       CGATGGCTGCGGTG TCG CAAGGCGGTCATCG       GGGTGGCTCCAATTC  47 20
 JH290_17655 NONE
        gspN 4071337 .. 4071372 -  -9.1  -2.59458   AAGCAGACCAATTCA   GCCGCTGCACAGACCAG CGCG CTG-TCTG-GCAGGGGC    GCGTCCGTCCTCCAT  56 86
 JH290_17645 NONE
 JH290_17640 NONE
 JH290_17635 NONE
 JH290_17630 NONE
        nagA 4065648 .. 4065673 -  -9.7  -3.08133   TACCGAGGCACGCAA         CCGGTGACTGCG ATC CGCAGGCAC-GG         CACATCGACGGCGCT  60 74
 JH290_17620 4064016 .. 4064036 -  -6.8  -3.19192   GTTGATCCAACGCAA            TCCGCGCA CGCCT TGCGCGCA            TCACTGCAGCGGTGG  53 26
 JH290_17615 4060399 .. 4060429 -  -3.9  -3.67597   CTGGGCAGCGAAGAA      GCCGCA-TACCCGC AAGG GCCGGAACTGCAGC       GTGTGCACGCCGCGG  54 289
 JH290_17600 4054099 .. 4054136 - -14.9  -2.91274   TGCATTGCAAGCAGA   GTGCTGCCCGCCGCAC GCATCAA GCGCGGCAGGCAGC-C   GTTGTGCCAACTAGA  77 36
 JH290_17560 4043981 .. 4044003 - -13.4  -2.52676   GAGCCTGGCAATCCA           GACGCGCAGC CAC GCTGCGCGTA           GGGGGCTATGCGTCT  71 31
 JH290_17555 4041640 .. 4041660 -  -6.7  -3.36327   GGATTTCATCCAGAA            CGACCGCCA TCG CGGCGAGCG            CGCCCCGCTGGACCT  56 510
 JH290_17540 4038217 .. 4038257 -    -6  -3.59979   TCGCTCCATTGCAAA CGGCAGCGCCCCGCGATGC ACAT GCACCG-GGGGAGTTAGCG  GTGGGCTAGGTGGCG  57 428
 JH290_17530 4035570 .. 4035588 -  -2.4  -5.48063   ATCGAAGACAAAAAA             GCCATG ACCGCCG CATGAC             AGACGATGCAGTGCG  90 161
 JH290_17525 NONE
 JH290_17520 NONE
         gfa 4033389 .. 4033417 - -21.8  -4.66537   CTTGCGAAGAGAAAA        TCCTGCGGCCGG GATCA CCGGCCGCAGGA        TCGGACCATCAGTGC 100 34
        fghA 4032415 .. 4032444 -  -4.1  -4.26327   CAGCGATCAAAACAA       CGACGCAACTGCC AGGC GGGAGCTGCGGCC        AGTGCTCGGATCGAC  66 117
 JH290_17495 NONE
 JH290_17490 4028415 .. 4028427 -  -9.1  -3.28712   CCGCCGCTGGCATAA                GGTGC CCG GCACC                TGTCATCCGAGTGTG  63 515
 JH290_17475 4026001 .. 4026029 - -26.1   -4.7254   AGCGCGCAGCAAAAA        GCGCGGCACACCC ATG GGGTGTGCCGCGC        CTTGGATTACTGCGT 100 122
 JH290_17435 4018037 .. 4018080 -  -9.5  -3.28188   ATGAAAACGCATGAA CG-GCTTGGACGCGCGCAGA TCAGC CCTGCGTGCGTCCATCCACG CGATTGCGTTGAGGT  63 258
 JH290_17420 4015239 .. 4015270 -  -6.5  -3.36505   AGAGCGGATTTACAA      CGCAGCCGCGCC GTCAATCCG GGCGCCGC-GCG      ACCAATCCACGCGCC  55 7
        rsgA NONE
 JH290_17395 NONE
 JH290_17390 4008860 .. 4008879 - -10.7  -5.45652   ATCGGCAATAAAAAA            GCACGCC GGTCAG GGCGTGC             TTTTTCTCATCGCAT 100 125
 JH290_17375 4002607 .. 4002632 -  -5.4  -3.09492   TCGGGAATCGTAAGA         GCGTGC-GTCC TGGAC GGATTGCACGC         AATCACTTGATGCTG  47 89
 JH290_17350 NONE
 JH290_17345 3995217 .. 3995237 -  -5.3  -2.89154   TAACACCACACCACA            CACCACGCG CAT CACGCCGTG            CCTCCGGGAAAATGC  46 16
 JH290_17340 3994076 .. 3994096 -  -6.8  -3.05715   AATCCCTCCATCGAA            CGCCTGCA TGGCG TGCATGCG            CTGCTCAATTTCGCC  51 108
 JH290_17335 3992977 .. 3992997 -  -2.6  -3.73414   TACACGACAGGCAAA            CTGATC ACCGTGCTG GATCAG            GTCGCACGCCACCGC  51 293
 JH290_17315 3987072 .. 3987113 - -26.7  -4.74103   GCTGCAATGCAAAAA CGGCCCTGCATCCCGCCGG GATA CCAGCGGAATACAGGGCCG  TAGGAAGCATCAGCG 100 35
 JH290_17310 3984607 .. 3984630 - -14.6  -3.35679   TGGCGTTATCGATAA          CCGAGGCGTC ACTC AACGCCTCGG           TCACCAACGCTGCAA  82 43
 JH290_17300 NONE
 JH290_17295 NONE
 JH290_17290 3977307 .. 3977325 -  -4.4  -2.80816   CGGCGATCGAGGACA             TGGTGCGC GAA GCGCCCGA             TCAATACCTGTGGAT  44 354
        waaA 3974317 .. 3974333 - -15.1  -3.25652   CGCAGTGAATGAAGA              GGCGGGC ATG GCCCGCC              TTTTTCATGTCTGCA  84 415
 JH290_17260 3968085 .. 3968095 -  -2.4  -2.67515   TCGATCACCAGATCA                 TGGC GCT GCCG                 TTGGCCGATGTGGCG  38 186
        leuC 3965724 .. 3965736 -  -3.4  -3.61356   ATTAGGGATTGGAAA                TTCG GAATT CGAA                GAAGCTGGAATGCGC  51 51
        leuD NONE
 JH290_17240 NONE
        leuB 3963041 .. 3963070 - -15.7  -4.39998   GACGCATACAAGAAA       GCGGCCACCGCCC CAAC GAACGATGGCCGC        CTCTCTAATCAAAAG 100 111
         ggt 3953954 .. 3953968 -  -2.7  -3.14564   GCAGCCGCTCAGTAA               CCGGC GGCCT GCCCG               TCCTTGCGGCTCTCC  43 4
 JH290_17200 3951666 .. 3951680 -  -7.8  -3.26947   CAAGGGCGACATCAA               CCGCAG CGA CTACGG               CATCAATTATCTGGA  56 375
        thiC 3947039 .. 3947055 -  -8.7  -3.48696   GGACAACAAGACCAA              TCACGCA CAC TGCGCGA              GACGCCAAATTCAGC  63 363
 JH290_17185 NONE
 JH290_17180 3943635 .. 3943648 -  -2.4  -2.90496   CCCCTGTGCAAATTA               CGTT TGCGTG AACG                CCGTCGCTTTGCGCG  40 9
 JH290_17175 3940644 .. 3940661 - -14.1  -5.15969   TGCTAACGCAAAAAA             GCGGGCC TTTC GGCCCGC              TTTTTCGTAACACGT 100 59
 JH290_17160 3937358 .. 3937397 - -17.3  -3.55444   TGCGGAGGCCTGAAA  GACGCCACTGGCCCGT TTGATCACT ACGGGCCAGTGGCG-C  AGCGCATCTCCGCAT 100 222
 JH290_17150 3934378 .. 3934388 -  -4.6  -3.12142   CGCAGACCGAACAGA                 CACC CTA GGCG                 TGCGCGGCCGCATCA  48 48
 JH290_17145 3933233 .. 3933253 -  -4.6  -3.09681   GAAAATTCGAGCGAA            TCGGCGCT TGCTC AGCACCGG            TGTCACAGTTGGACG  47 82
 JH290_17135 3930734 .. 3930757 - -17.4  -3.15544   TTCCACTGGCAGGAA          GGACCGGGCG CTGC CGCCCGGCCC           GACGGCTCAGCGGCC  89 32
         mpl NONE
 JH290_17125 3928337 .. 3928375 - -11.1  -2.60075   CGGTCGTTAACCAAC  CGCGCCAA-GCGCATTCCC TGC GGGA-TGCACACTGGCGCA  CTCAAGCGTGCGGAG  62 104
 JH290_17120 3927352 .. 3927368 - -10.9  -2.81133   CATGCAGCCATCACA              CAATCGC TCA GCGATTG              CCGCACCACCAAAGA  63 85
 JH290_17110 NONE
 JH290_17105 3923179 .. 3923199 -  -3.8  -3.86202   GCGCACGATAGCAAA            CGCGGCCG TGAAC CCGCCGTG            GTCACTCCAGAAACA  58 27
 JH290_17100 3921584 .. 3921611 -  -9.2  -5.06414   TGCCTGCAACAAAAA        GAACGCGCCC-AT TTC ATCAGGCGCGTCC        TCGCCCAACTCAGCG 100 35
 JH290_17090 3919135 .. 3919163 -  -8.7  -4.84359   GCACCGCGATAAAAA        CGCGAGCCAGTGC CCC ACGCTGGCCGGCG        CGGTGCCGGCCACGA  90 85
 JH290_17080 NONE
 JH290_17075 NONE
 JH290_17070 3913456 .. 3913474 -  -2.5  -3.05596   CACGGCGGGACGGAA            CATGGCAA CTCC TTGC-ATG             AGGAAACGGTCAGTG  41 35
 JH290_17065 3912959 .. 3912973 -  -3.4   -3.2505   CAAAGACGAACTCAA               GGACGC ACG GCAACC               ACTTCGATCTCTACC  44 7
 JH290_17060 3911660 .. 3911677 -  -2.5  -2.62184   GGCGCCGTCAGAGTA             CCGCGAG CAGG CAGGCGG              CAGACAACCCCTGCC  38 71
         azu 3911035 .. 3911092 - -14.2  -2.72344   CGGCAGGGCCAACCA CGCCCTGACTTCAGCCGCGCATCACAGC CGTG GCTG-GATGCGCGACAGGCGT-AGAGCG ATGCAGCGCGTGCGC  75 45
 JH290_17040 3903219 .. 3903248 - -20.1  -5.42862   ATACCGCGAAAAAAA       GCAGCGACACGTG CCAT CACGCGTCGCTGC        TGGTTCTGACTCCGT 100 53
 JH290_17030 3901196 .. 3901249 -  -5.2  -3.53091   ATCTGGGCGGGGAAA TC-CCCGACGACCGCGCACTGGCGCAG ATC CTGGACCCG-GCGCCG-CACCGGGCGA TCCTGATCCGCATCC  54 398
 JH290_16985 NONE
 JH290_16980 3894794 .. 3894813 -   -10  -4.25104   GCTGGGTCAGTAAAA            CTGGCGGCG CGG CGC-GCCAG            GCACGGTCACATCGA  85 228
 JH290_16935 NONE
         gmk 3885237 .. 3885251 -  -8.5  -2.70932   TTTCCTTTGGAATCA               GCCGC TTGGG GCGGC               TTGCGGCAGCTGGCG  54 141
        rpoZ 3884761 .. 3884782 -   -13  -4.67038   CGCTCAAAACGAAAA           CAGCCCGC GACAAG GCGGGCTG            CTTGGATCGATCGCA 100 67
 JH290_16920 3882334 .. 3882347 -  -4.5  -4.28994   GAGCAGCTATCAAAA               CGACT GCGC AGCCG                CCAGGCGGGCGCGGC  66 187
        kdgD NONE
 JH290_16900 3878564 .. 3878574 -  -8.2  -3.10715   CCTATGACGATGGAA                 GCGC AGT GCGC                 TTCGATACTTCAGGG  57 105
 JH290_16895 3877178 .. 3877188 -  -2.4  -2.70932   TCTCCGCGTGAATCA                 CAGC GCT GCAG                 GAAGGGGCATGGACG  39 12
        gudD NONE
 JH290_16885 NONE
        garD 3872762 .. 3872786 -  -6.3  -4.28254   CGTCAACACTGAAAA          CGAACGCCCAT TGT ATCGGCGCACG          CCAGGCACGGGCCAA  73 116
 JH290_16875 3872326 .. 3872343 -  -5.5  -3.05384   CTTGGGGTGACGGAA             CG-CGCGC GCG GCACGGCG             AATCGCGCCTTCAGT  49 40
        recG 3870202 .. 3870216 -  -4.9  -3.05463   ATCCCCGCTACTCAA               GCGGC CGCAT ACCGC               ACTGCGCCACCGATC  47 7
 JH290_16865 3869100 .. 3869112 -  -2.6  -2.78715   AAGCCGGGCATTATA                GCCA CCGCC CGGC                ACCCGGTGCAAGCCG  39 44
 JH290_16860 3868767 .. 3868793 - -23.8  -5.03145   GAATTCCCCAAAAAA         CAACGGCCGCGC AAT GCGCGGCCGTTG         CCGGTACAGCCCGTC 100 49
 JH290_16855 3867251 .. 3867269 - -17.4  -4.13767   GCCCGCAGCGCAAAA             CGCCCCGC AAT GCGGGGCG             TTTGGTCAAACAACC 100 54
 JH290_16840 3862398 .. 3862409 -  -2.2  -3.68351   TTGCCATCAGTCAAA                GCTCC TCA GG-GC                CAGGCCGGTGGCGAT  52 5
 JH290_16835 NONE
 JH290_16830 NONE
 JH290_16825 NONE
 JH290_16820 3858389 .. 3858416 - -16.4  -4.61633   ACAGACCGCTAAAAA        GAAAAAGGCCGC TTTC GCGGCCTTCTTC         TATTGCCAACGCGTT 100 40
 JH290_16815 3857125 .. 3857145 - -10.4  -3.17763   GGCATACCGCAGCAA            CGCTACCC GATCA GGGCAGCG            GAATCTTTTCCAACA  64 15
 JH290_16810 NONE
 JH290_16805 NONE
 JH290_16800 NONE
 JH290_16795 NONE
 JH290_16790 3850706 .. 3850731 -  -6.7  -3.55444   GGCGCAGCCGCCAAA         GGCGCAAGCGGC ACC GCAGCA-GCGCC         GGTGTGCACTACCCG  59 380
 JH290_16785 3849011 .. 3849023 -  -9.1   -3.0634   AAGCGGAGGGGAACA                CCGCT GGA AGCGG                AGACCGGTATTCTCC  60 241
         tkt 3846942 .. 3846957 - -11.8   -5.4505   CCTTCCAAGAAAAAA              GCCGGC TTTC GCCGGC               TTTTTTCAATCAACA 100 51
 JH290_16760 3840541 .. 3840577 - -15.1  -3.07113   GATCAGTGCAGTGAA    TTGCATCGCTGCTGCGC ACT GTGCCGCAGCGATGCAC    TATTCCTACGATTCA  81 271
 JH290_16730 NONE
 JH290_16725 NONE
 JH290_16720 3829602 .. 3829614 -  -6.3  -2.70932   CGCGCGCGGCAACCA                CAGTT TTG AACTG                GTCCGTCGCAGCAAG  47 410
         gap 3821465 .. 3821492 - -16.4  -5.18561   GAAAGATGCAAAAAA        CAAAAGCCCCAG CAAG CTGGGGCCTTTG         CGACAGCATCAGACG 100 48
 JH290_16660 3820804 .. 3820821 - -14.1  -5.65177   ACACGCATAAAAAAA             CGCCCGG ATGA CCGGGCG              TTTTTTTATGATTAT 100 37
 JH290_16655 NONE
 JH290_16650 3816318 .. 3816333 -    -9  -3.46068   TGGGGAATCGAAACA              GCTGCA GGCA TGCAGC               GCGCTGACGACCACG  65 258
 JH290_16645 3815070 .. 3815089 -  -3.5  -4.04806   GTCCAGATCAAAGAA            CAGTGTG GCTGCA CTCACTG             CCCGCGGGCCTCGAG  58 20
 JH290_16640 3814431 .. 3814448 -  -9.8  -3.08679   CGGTGGCAGTGAAGA             CGCGCC GCGCTA GGCGCG              GATCAGCCCGCTCAA  62 17
         pyk 3812678 .. 3812708 - -18.3  -2.87931   CGCATCGGCCACACA       GCACGACGGCGGC ACATG GCCGCCGTCGTGT       CACTGCAGGCTGCGT  90 91
 JH290_16630 3811246 .. 3811279 - -18.9  -3.75332   ACTGGCGAACCCAAA     CGCAAGACGCCGGCC TCGC GGCCGGCGTCTTGTA      TGCGTGATGCAGCCT 100 51
 JH290_16605 NONE
 JH290_16600 3804951 .. 3804983 - -18.5   -5.4505   GGCCTGAACAAAAAA      TGGCGGACCCGGG CTCCCGT CCCGGATCCGCCA      CCAAGCACGCCAGGT 100 492
 JH290_16590 3803028 .. 3803046 -  -4.5  -4.23794   TCAACGGAAGAGAAA            GCG-CGGC AGCC GCCATCGC             GTGCACAGCACGCCT  63 108
 JH290_16585 NONE
 JH290_16580 3799145 .. 3799173 -  -5.9  -3.31144   CGGGGACCGCTACAA        GATCAGCCCGATC GCC GACTGGACCGACC        GCGACGTCTGGCAAT  53 242
        cysD NONE
        cysN 3791760 .. 3791774 -  -3.5  -2.81133   CAGGCAGCCACCACA              GCG-CG CGCA CGTCGC               TCAGACCGGCATCAC  40 138
 JH290_16550 NONE
 JH290_16545 3787173 .. 3787185 -  -6.2  -2.87132   GCTGGCGGCGACACA                GCGC TGGTT GCGC                ATCACGCGCGGGGCG  48 257
 JH290_16540 3784283 .. 3784302 -    -5  -3.09327   GCAGGTCATCGAACA            TGCACTGGC CTC ACC-GTGCA            GCAGCGTCGCAACGC  47 67
 JH290_16535 3783714 .. 3783740 - -10.2  -3.53444   CGATTCTGGCCGAAA        GCGC-TGCACG ATGCGA CGTGCACGCGC         GCCACAGGCTCAGCG  68 35
 JH290_16530 NONE
 JH290_16525 NONE
 JH290_16520 3779703 .. 3779742 - -17.2  -3.63515   CCTCACCCGCAACAA  CCG-CACATCACCGCCCGC AGC GCAGGCGGTGATGCGACCG  ATTACGGCAGATCGA 100 27
 JH290_16515 3779356 .. 3779383 -  -7.7  -3.15861   CACTATCGTGAGCAA        GGCACGTGTGCG CACTT CGC-CACGTGCA        CGCTGGCGCGCGCCG  56 102
 JH290_16505 3773723 .. 3773749 -  -3.5  -2.75957   TAGCAACTGCAAGGA         CGCCGCTAGGG ACTGG CGCTGGCGGTG         CCCGAAGACGGTGCA  40 4
 JH290_16500 3770604 .. 3770639 - -23.4  -3.78934   GTCTCGCTAGAAGAA    CATGCGGCACGACGCG GATG CGCGCCATGCCGCATG     GGGTGCAGCCGGATC 100 39
 JH290_16495 3767975 .. 3768002 - -14.2  -5.24129   CGCCTGCATAAAAAA        GGCCGCATCG CTTCCCGC CGATGCGGCC         AAATGGGAGGGTGCC 100 297
 JH290_16490 3766502 .. 3766537 - -16.3  -2.76263   GTGATGACTCAACTA    CGCTGTTGGGCGATG AGAGCA CATCACCCAACAGCA     CAACGCCCTGCGCAT  81 62
 JH290_16460 3761257 .. 3761271 -    -7  -3.03124   GCCGACTTTCGAATA               CGTGCG CTG CGCCCG               ATGCATGTAATCCAT  51 272
 JH290_16435 3755244 .. 3755267 - -18.2  -2.62184   GCGTGGCGCACATGA          CAAGGGCCGG TTAC CCGGCCCTTG           TCGTAGACAGCCTTG  86 65
 JH290_16430 NONE
 JH290_16425 3753007 .. 3753021 -  -6.4  -3.94634   GATCATCTCAAAGAA               GGTGAT GCT ACCACC               CCCGCTGCGGCAACT  64 494
 JH290_16395 NONE
        dndC NONE
 JH290_16385 3747385 .. 3747411 -  -3.6  -3.60627   GTAGCCGACTCGAAA         GCCTTCCAGTCT CGC AGACTGATTGAC         TCAAGATGCATTGTC  51 26
 JH290_16375 3743534 .. 3743551 -  -5.5  -4.07568   TCCTTGGTGCTAAAA             GCTCGGA AACT TCGGAGC              TGGAAATGCCATACT  65 288
 JH290_16365 3743093 .. 3743114 -  -7.3  -3.19789   ATATCCAAGACGCAA           TCGGATGCT TTTT AGAATCCGA            CGATGAGAGCTAAAA  56 35
 JH290_16355 3740404 .. 3740429 -  -8.2   -4.2123   GACCGACCCAAGAAA         GCAATCGGCG GCATGA CGCCGGCTGC          GTATGCCCAACATCT  76 71
 JH290_16345 NONE
 JH290_16340 3737936 .. 3737953 - -10.5  -2.53263   CGCACCCGGAAGCGA             GCACCGC GCAA GCGGCGC              ACAGCGAAGGGCCGC  59 327
        radC 3737312 .. 3737330 -  -7.4  -4.25401   CAAAGTTAACAGAAA             TCCCGC GTCTTGT GCGGGA             CTGTCTTACCCCGAC  76 71
 JH290_16325 NONE
 JH290_16320 NONE
 JH290_16315 NONE
 JH290_16310 3730622 .. 3730646 -  -2.8  -3.85092   ACTATCGAGACCAAA         TCCAACGCGCC ACCG AGCGC-TTGGC          CGAGCTGCAAGCAAG  56 252
 JH290_16300 3728701 .. 3728721 - -18.3  -2.53233   GAACTACATCAAGAC            GAGCCCCGC ACT GCGGGGCTC            TTTGGTTTTAGTGGA  86 33
 JH290_16280 3726238 .. 3726250 - -10.5  -4.08767   CTGAGCCGCTGAAAA                CGGCG CAG CGCCG                GTGACACAGACGCCT  78 300
 JH290_16270 3725687 .. 3725697 -  -5.4  -3.90112   CGGCGGGGAAGGAAA                 TTGC GAA GCAA                 ACTGCGCGGCCGCTT  60 115
 JH290_16265 3725177 .. 3725187 -  -2.4  -3.60098   ACCGCCCAGCGTAAA                 GCGG CTG CAGC                 ACGGCAGTTGCAGGC  49 45
 JH290_16260 3724438 .. 3724452 -  -2.8  -3.06183   GCGATTGCCATGCAA               GGTG CAATGCC CACC               CGCAGCCTCGCGCTC  43 297
        rimK 3720554 .. 3720581 - -18.5  -4.84017   AAGCCGTCACAAAAA        GGCCCAGGTGC GGCTAG GCACCTGGGCC         AAATGTTCATCCCGA 100 139
 JH290_16245 NONE
 JH290_16240 3718053 .. 3718065 -  -5.5  -3.07816   TGGTTAGCGATGGAA                CGCCA GTG TAGCG                ATGACGCCGCGCTCC  49 1
 JH290_16205 3712504 .. 3712523 -  -9.2  -5.31275   GTCGACTATAAAAAA            GCCCCCGC AGTT GCAGAGGC             TTTCTAGAACTGGTC 100 54
 JH290_16200 3711922 .. 3711951 -    -8  -3.37028   ACCAACAGTGGAGAA       GCGCGACTTTTGA CTATT CCAAAAGTCGC-C       ATTATTATGCACTTT  58 60
        pilB 3709806 .. 3709829 -  -4.4  -3.72893   CACGCCGCGACCAAA          GTCGCGGACG CCAC CATCCTCGCC           GACAACAGCCAAGGC  55 352
        sucC NONE
        sucD 3703116 .. 3703147 - -18.8  -4.10925   AGACATCGCCCAAAA      CGCAGAAAGCCGCC CGAA GGCGGCTTTCCACG       ACACCACACTGGTGA 100 44
 JH290_16160 NONE
 JH290_16155 NONE
 JH290_16150 3700389 .. 3700403 -  -4.2  -3.33696   GTGTTCTTCAACGAA               CTCAAC TGC GCCGAG               GTATATACCGGCAAT  47 313
        rluD 3697230 .. 3697265 - -10.3   -4.1891   CGCCGGCAACACAAA    CGACGGCACGGCGCT CACCTC AGCGCCGCGCCAACT     CGGCGGCGCGTGCGC  81 9
        pgeF 3696409 .. 3696427 -  -3.1  -3.57561   CGGCAATTGGGCAAA            GGCTGCCG CGCC CAGCA-CC             TGCGCAAACAGCGGC  51 45
 JH290_16125 NONE
 JH290_16120 3695280 .. 3695290 -  -6.8  -3.75153   GCGCTGTAATCGAAA                 GCAG CCA CTGC                 GTGACCAGCTGCGGT  62 243
 JH290_16085 NONE
 JH290_16080 3680395 .. 3680411 -  -4.4  -2.78384   GCGCGGTGGATCAGA             GCG-TGC TGCT GCAGCGC              CGCCGCTGAGGACCG  42 72
 JH290_16075 3678675 .. 3678729 -  -7.7  -3.21218   ACCGCTGACCAGCAA CGCCG-CACCGGCCAGCAC-CACGCGC AGC GCGTGCGCGCGCCGGCTCATGCCAGCG TCTCTTTACGTGCCG  56 15
 JH290_16070 3677429 .. 3677439 -  -2.4  -4.56978   CTCGCAAATAACAAA                 CGAG CCC CGCG                 TTTACGCCTCGCCGC  68 142
 JH290_16065 3675865 .. 3675875 -  -4.6  -4.08216   GGACCTGCGCGAAAA                 CCGG CTG CCGA                 AGTTCCTGGGCTATT  62 500
 JH290_16050 NONE
        clpB 3671725 .. 3671755 - -17.7  -3.60627   TGATCCTACGCCAAA      CAC-ATCGCCCCGC ATCA GCGGGGCGATCGTG       ACTGCGTGAGCCTCA 100 44
 JH290_16040 3670708 .. 3670744 -  -5.2  -3.60348   TCGAACAGGATACAA   CCGCGTGCACGCATGC CATCAAC GCAC-CG-GCACGCGA   TACCCCTCACGCAAG  55 7
 JH290_16035 3669241 .. 3669253 -  -9.1  -3.23853   CGCCCGGAAGGAAGA                TGGGC TCT GCCCA                CTCCCGCTTGGACAA  61 54
        btuB NONE
 JH290_16025 NONE
 JH290_16020 NONE
        cobO NONE
 JH290_16010 NONE
 JH290_16005 3662079 .. 3662120 -  -8.8  -3.09671   ATGGGAATCGCAACA CGGCTTGCCAG-GCGCACAA CCGA TTGTGTGCACTGGCCAGC-G CAACGGCGACGTGCA  57 88
 JH290_16000 NONE
 JH290_15995 NONE
        cobU NONE
        cobT 3658023 .. 3658054 -  -3.7  -3.14931   GCCATGCCGCAGCAA     GGTGATCTGCG-CGC TCAT GCGTCGGAGACC-CC      GGCCTCGGCAAAGGT  47 8
 JH290_15980 3657445 .. 3657488 -  -7.5  -3.14344   GATGCGGGTCAGGAA GCCAACCGCCGCAAGCA-GCCC ATC GATCATGCCTGCG-CGGT-GGC CACAGTCGTCGGAGG  56 8
 JH290_15975 3656724 .. 3656749 -  -6.7  -2.71144   CAGCGTGCTCAACCA         CGCC-GCATGGC ACC GCCTAGCCGGCG         TACACCGCCAGGCCT  49 16
 JH290_15970 3655611 .. 3655624 -  -5.2  -3.61398   GCTGGCCCGCAATAA               GCGC GTTGCA GCGC                TCGCCCCCGGCGACT  55 141
 JH290_15930 3644889 .. 3644913 -  -5.7  -3.33969   CAATGCAGTCGATAA          CCATCGCCT AGCATGA ACGCGATGG          ACAACGGATTACGGG  52 80
 JH290_15925 NONE
 JH290_15920 NONE
 JH290_15915 3642004 .. 3642020 - -15.1  -3.02144   GCACCTGCTCGAACA              CGGCGCC GAC GGCGCCG              TGCTGGCCGAACGCG  74 234
 JH290_15905 3637783 .. 3637832 -  -2.7  -3.14564   GTACGGCTCGATCAA GCGCATCAGCGACCCGGTCGACGG CAG CCAG-GACCAGACCTATGACGCAC GCTGGATCCTGAACC  44 334
 JH290_15880 NONE
 JH290_15875 3626974 .. 3627020 - -19.5  -2.73875   GCTGGCCGAATAGCA GCGCGCCGATTGAGCGGCGTCGC CGC GTGCCGC-GCTCAA-CGGCGCGC GGACGCCTTCCCCAC  90 14
         bla 3625092 .. 3625102 -  -8.2  -3.15663   ATGTAGGTGCACCAA                 GCCG CCG CGGC                 TGCGCTGGCCGCCGC  58 43
 JH290_15860 NONE
 JH290_15855 3623707 .. 3623733 -  -3.7  -3.53012   CCGGCCGCGTGGAAA        CCGGA--GCAGAC AGC GTCAGCGATCCGG        CCATGGGTGGGCCGG  51 175
 JH290_15830 3613834 .. 3613868 - -13.4   -3.0682   GCCACCAGACACAGA     CCGGCGCGGATGCGAC CAG GCCACCGCCGCGCCAG     AGAGATCACGCCGGG  75 31
 JH290_15825 3613104 .. 3613134 - -13.3   -4.2558   GAGCCGCTATCAAAA      CGACCGCGCGGCCGC CGG GCGG--GCGCGGCCG      GCTTTTCGAAATCGG  95 121
        aspS 3610182 .. 3610218 - -17.4  -3.40073   ACGCCGACTAATCAA   CCAG-GCACGGCCATGC CACT GCATGGCCGTGCACTGC    GGCAGGTCAGGCCTG  93 32
 JH290_15805 3609303 .. 3609337 -  -5.8  -3.05816   GCAGCCCGCATTCAA   TGTGCTGGCGCGC-ACG ACCA CGCCGCGCGC-AGC-CA    CCGAGCCCGGCACTA  49 38
 JH290_15800 NONE
 JH290_15795 3607689 .. 3607699 -  -5.4  -3.14344   GACGCTGCCGAGCAA                 TGCA GGG TGCA                 GCTGTTTCGATTCCC  48 88
        ruvC NONE
        ruvA 3606232 .. 3606256 -    -7  -3.46509   CGTGAAGAAGAGGAA          GACGGCGCGC TACCG GGGCACCGCC          CCGGCCTTGCGGGCA  57 159
 JH290_15780 NONE
 JH290_15775 NONE
        ruvB 3602086 .. 3602096 -  -2.4   -3.4252   GGGCAGCCATCAGAA                 CAGG TCT CCGG                 GTTCGCCGATTGCGG  47 9
        ybgC NONE
        tolQ NONE
        tolR NONE
        tolA 3598992 .. 3599009 -    -7  -2.82291   AAGGGATACCAATCA             GCGAGT GAACAT ACTCGC              AATCATGAACGAGAC  49 226
        tolB NONE
         pal NONE
        ybgF 3596221 .. 3596243 -  -5.6  -3.57144   GGCGGCAGCGCGAAA          CGGCTCAGC GCAGTT GCTGA-CCG           AGGCGGATGGACTGC  57 7
        queE 3595377 .. 3595399 -  -8.5  -2.59683   AGCGCAGCGCATAAG           GCAGAAGAC TTTTC ATCTTCTGC           GCCTGACGCACCGGC  53 123
        queC 3594573 .. 3594598 -  -6.7  -3.08133   TACCGACTGAGCTAA         CGGCCCACTGC CCCG ACTGTGCGCCG          GGGTGCGCATTCTAC  51 53
 JH290_15720 3594468 .. 3594482 - -12.8  -5.07523   TACAGACAAACAAAA               GGCGCC AAA GGCGCC               TTTTTGCTGACTGGA 100 46
 JH290_15705 NONE
 JH290_15700 3591564 .. 3591601 - -22.9   -2.8294   GATCCTGCACAAGGA   CTCCCCGGAACGCCGCGA TCT TCG-GGCGTTCCGGAGAG   TTTTGCCGTGCAGGG 100 106
 JH290_15690 3587536 .. 3587581 -  -5.3  -2.75481   GTTCAACCGCAAGGA CACGCTGCAGGCACGCTTTGCG CGA CGCATCACGCGCATGCAGT-TG TCGCCGCCGATCCAC  45 368
 JH290_15680 3586116 .. 3586126 -  -2.4  -3.40403   GGCCGGTGAGCAGAA                 TCCG GCA CGGC                 AAGCTTGCCCACTCA  47 100
 JH290_15675 3585576 .. 3585597 -  -6.5  -2.71011   AGTGCTGGCTAACTA           GC-CAGCAGC AGA GCTGCAGAGC           GCGCCCGGAATCTAG  49 37
 JH290_15660 3583347 .. 3583364 -  -3.3   -3.1211   CAGCACATCAGGCAA             CGCTCGG AATT CCAACCG              CTTTTTTATCACCGC  44 71
        hrpA 3573871 .. 3573891 -  -8.9  -3.03701   GCGCACGAAACCAGA            CGGCAAGGC GAC GCCTCGCAG            GCAGCGGCAACCCGC  57 61
 JH290_15585 3561539 .. 3561559 -  -5.3  -3.09516   GCGTTCACCACGCAA            TGGTAGCCG CCC CGGCTGCGA            AGACTGCGTGCGCTC  47 39
 JH290_15580 3559650 .. 3559666 -  -2.1  -3.37959   CAAGGGCAAGATCAA              CCTGAGC ATG GCGCACG              GCCAGCCGGTCGTAG  46 331
        mrcB NONE
 JH290_15565 3554496 .. 3554515 - -11.4  -3.28712   CCGCGGTCCTCAGAA            CCTGCCGG CCTA CCGGCAAG             GTTTCGAACCATCGG  69 227
 JH290_15560 3552188 .. 3552209 -  -3.7  -3.05715   AATCTTCGCAGCGAA           TGCATCG ACGCGCAG CGACGCA            ATCGCGCCTGACAGC  45 44
 JH290_15555 3551769 .. 3551781 -  -3.3  -3.30124   TTTCATGGGCGAGAA                CCGTG AAT CAGGG                ACCGGGAATCGGGGC  46 199
        tsaB 3551044 .. 3551058 -  -2.7  -3.14132   TGCGCTGTCCATCAA               CGCGG GACCG CCGCC               GCCTTCGCTGCGCGT  43 7
 JH290_15545 3549666 .. 3549688 -  -4.6  -3.16039   AATTACCCTGACGAA           GCGCGCCGCC GCC GGCTGGGCGG           CAAAGTGGTGATCAC  47 454
        pilG NONE
 JH290_15525 3547074 .. 3547093 -  -5.7  -3.23711   TGGAGAACGCATCAA            CGCACCA GTTGTT TGATGCG             CGCGATCAGATCGTC  51 2
 JH290_15520 NONE
 JH290_15515 3544418 .. 3544429 -  -7.2  -3.07816   CCTGCATCGACGTAA                CGCG ACTA CGCG                 CCATCTGCTGATCCT  54 60
 JH290_15510 NONE
 JH290_15505 NONE
 JH290_15500 3535578 .. 3535602 - -11.4  -2.89683   AGGCGATGGCACACA          TGGCTGCGTG GCGGT CACGCAGCCT          TGGGGCGTTGGTGTC  64 39
 JH290_15495 3534434 .. 3534458 - -13.6  -2.78463   ACGTTTTGCAGGACA          CGCAGCTGGC AGCGG ACCAGCTGCG          CGTGGACGTCTCTTC  67 303
 JH290_15475 NONE
 JH290_15470 3527845 .. 3527860 -    -6  -4.08216   GTATCGCTTTCAAAA              GGCGAG CGAT CGCGCC               CTCAACCTCGCTTCC  65 237
 JH290_15455 NONE
 JH290_15450 NONE
 JH290_15445 3523326 .. 3523338 -  -4.7  -3.05384   GCTCGCGGCATGCAA                GGCTG CTC CCGCC                CAGTCTCGCTCATGC  47 64
 JH290_15435 3521081 .. 3521101 -  -8.9  -3.54543   ACCCACTCGGCCAAA            CAGCCGCAG ATC CTGCTGCCG            CCACAAGCGCGCGAC  62 124
 JH290_15390 3510150 .. 3510178 -  -3.8  -4.25104   GCTGGCGTATCAAAA       CG-GGCGGGAG CTGAACTT CTCCCGGCGCG        GCACGCCAAACCGGT  66 361
 JH290_15385 3507145 .. 3507174 -  -3.5  -4.26189   CCAGAAATGGCAAAA       CTCCGAAGATCCA AACG CGACTCTCCGGAA        CGATGCGACATTCCG  64 270
 JH290_15360 3502354 .. 3502369 -  -4.7  -3.64716   GCATTGGGCAAAACA              TTCCG GGATGG CGGAA               GTGTCCGCCGCGGCG  55 453
 JH290_15355 3500019 .. 3500032 -  -2.3  -4.36485   ACAAAACAGCCAAAA               GTGAG CTAA CTCGC                TTTCAGTAAAGGTTT  62 109
 JH290_15350 3497065 .. 3497096 -  -6.4  -4.15222   AGCGCGGCCAAGAAA      CCACCGCGCTCATC ATCA GACGGGCGCAGCGT       TCGCTTCGATCGGTT  69 213
 JH290_15300 3474898 .. 3474911 -  -5.2  -3.29144   CGAGTTGCGTGATAA               CGGC GCAGCG GCCG                AATTGGGAATCTGAG  50 269
        nudE NONE
        cysQ NONE
        mazG 3470026 .. 3470062 -  -6.3  -3.71848   GGTGGCCACGAACAA    CAGCAGCGTGGTCAGCG CCG CGCTCACTGCGCGGCGG    GCTCGTCACGCTTGA  62 12
 JH290_15270 NONE
 JH290_15265 NONE
 JH290_15260 3467936 .. 3467954 - -13.8  -3.01712   GCGTGCGGCGCAAGA             CGGGCGCA TCA CGCGCCCG             TGGGTGGATCAGGTG  75 34
        gcvT 3466544 .. 3466564 -  -3.9  -3.28791   AGGGTTCGGGGACAA            GGCGCTAGT TTA ACCAAGGCC            GTGCGTCAGGTGCTG  48 107
        gcvH 3466067 .. 3466088 - -15.9  -5.81412   GCCAGGCAAAAAAAA           TGGCCGCTC GGAT GAGCGGCCA            TCGGGATGCAGCAGG 100 49
 JH290_15240 3465187 .. 3465213 - -12.3   -4.1399   GGACGGATACAGAAA         CACCCGCATCG AACGG CGACACGGGTG         CGTGATCGGAACGAC  86 174
 JH290_15235 3464532 .. 3464563 - -15.2   -5.4505   CCGCCCAATAAAAAA      GCTCCCTCCCCG CTGGGCGT CGGGGAGAGAGC       TCGATGTTTACGGCG 100 56
 JH290_15225 3460057 .. 3460073 -  -4.3  -2.56596   GGCTCGATCAAGGTA              GGCGCCA GCA TAGCGGC              GATGACTGGCGTGCG  41 43
 JH290_15220 3459235 .. 3459248 -  -2.3  -4.14392   GGCGAATGTGCAAAA               CGCTG TAGG CATCG                CGTGGAGCGATTGCG  59 458
 JH290_15205 3454772 .. 3454789 - -14.1  -5.52909   CAAGAGGTAAAAAAA             CGGCCCC GAAA GGGGCCG              TTTCTATTGTTACAA 100 90
        mtgA NONE
 JH290_15180 NONE
 JH290_15175 3447209 .. 3447232 -  -7.4  -2.72661   TATCAGCTTGAAGGA          CG-AGCAGCTG GAT CTGCTGCTGCG          CCCGCGCCCGAAGGA  51 255
 JH290_15150 NONE
 JH290_15145 NONE
 JH290_15140 3438427 .. 3438454 -  -2.6  -3.76482   CGACAGCACCAACAA        GGCGTCG-GGTGC GAA GCACCGCAACCTC        AGCCAGCAACGATCC  52 24
 JH290_15130 3436542 .. 3436559 -  -8.4  -4.04897   ACAAGTACAAGGAAA             CCAGCC GTGGCG GGCTGG              CGGTGAATGTCATCG  73 69
 JH290_15120 3434570 .. 3434588 -  -4.4  -3.88291   TACCACGCCGAGAAA             TTCCGCGC GCT GGGCGGTA             ACCAGTACGCCGCCG  58 315
 JH290_15100 NONE
 JH290_15095 3425221 .. 3425252 -  -3.6  -4.68424   GAACGGACGGAAAAA      GGCGCACTGGACACG TTT CACGACAAGT-CGCC      GCATAGTGCGGGCCA  73 484
 JH290_15090 3421636 .. 3421662 -  -7.2  -3.14931   TGCATTGCCCACCAA         GCCCGCGCTA CAACTCC TCGCGCGGAC         GCACTCGCCGTAACG  56 6
        pdxH 3414161 .. 3414188 -  -6.2  -3.14132   CTTCGCTGCCATCAA        GTACCGCC-CGGC AGG GCCGTGGCCTTAC        GGATACAGCATCCGC  51 22
 JH290_15055 NONE
 JH290_15050 3412753 .. 3412798 -  -3.1  -3.01712   CGTGGCGCCGCAAGA CCCGGTACA-GCCGTCCGACGA TGA TCATGGCGCGTCCTGTGCCGGG GGGTGCGGTCAGCTG  43 34
 JH290_15045 3411691 .. 3411719 -    -3  -5.01732   AACTTGCTGAAAAAA        CTCATCGTCATG CACCT CGTGGCGATGGG        GAAGCGGAAACGGCC  78 4
 JH290_15040 NONE
 JH290_15035 NONE
 JH290_15030 NONE
 JH290_15025 NONE
 JH290_15020 3408625 .. 3408683 -    -8  -2.72144   GTAGCTGCTCGAAAC CGGACCCGCGCATGCAGCGCACACCGC CACCTC GCAGTG-GCGGTGCACGCACAGCAGCG TCTTAGAGCGGCTAA  52 35
        soxR 3406031 .. 3406041 -  -3.2  -2.70932   GGGGGGGGGGAACGA                 CCAT CCT ACGG                 CGGCCCACCTCATCC  40 69
 JH290_15005 3403900 .. 3403934 - -21.6  -2.65264   GCATGACGCACACGA     CAACGGCGCAATCGCT GCA ATCGATTGCGCCGTTG     TGGCCTTGCTCAACA 100 99
 JH290_14995 3399951 .. 3400000 -  -6.4  -4.60487   GAGCATTGCGAAAAA GCGAGC-CGCCGGCAAGCCGCATA GCAC CATGCAACT-GCAGACGAGCACGC ACGGCATCCGCGTGC  78 151
 JH290_14990 NONE
 JH290_14985 NONE
 JH290_14980 3396442 .. 3396474 -  -9.8   -3.8579   AGCGAATAACCGAAA     CAGCGACAGCGGCGC TGGC GGGCCGC-ACCGCTG      CGTGACGGCTTTACA  76 63
 JH290_14965 3394876 .. 3394910 - -15.7  -2.52543   AGCGCTCCTAACCGA     TCGGCGGCACGGG GTAGCCCCA CCCGTGCCGCCGC     CAGCAGTGCCGACTC  76 39
 JH290_14955 3392818 .. 3392835 -    -4  -3.06969   CAATCGATGGCAAGA             CCCCGC TGTACC GCGTGG              TCTGGAACGATGGTG  45 394
 JH290_14940 3388748 .. 3388770 - -12.6  -2.81702   GAACATGAGCAACCA           CGCCCGCGCC AAC GACGCGGCCG           ACAAACCCGACCAAC  68 50
 JH290_14935 3387198 .. 3387226 -  -7.4   -4.7254   AGCGGCCATCAAAAA       GACTGCGCAGCCGC CAG GCGGCCGCG--GCC       GGTGCTCGAAATCGG  86 213
 JH290_14925 3385094 .. 3385119 - -19.1  -4.58685   AAACGCTTGCAAAAA         GAAACCCCGGC CAAG GCCGGGGTTTC          GGTCACACAGGGTGG 100 51
 JH290_14920 3383256 .. 3383309 -  -7.1  -3.15147   GCCAACCAACACACA CGGC-CACGTGAGCGCCGTTCGCCAC GCT GCTGCTAGCGGCGCACGCAGGCGCCG CCTGTCAGCCAATAC  53 44
 JH290_14915 NONE
        cydB 3380084 .. 3380127 -  -9.4  -2.71364   CCATGGCGCCAAGGA CGAGGCGGTCCCGCCGCACGA CGA CCGCGCG-CTGTACCGCGCCG CCAAGGGCGTGGGCG  57 446
 JH290_14830 NONE
        murA NONE
 JH290_14820 3365168 .. 3365186 -   -16  -4.77438   ATCGACCATCAAAAA             GCCCGGCA GCG TGCCGGGC             TTTTTTTGTGTCTGC 100 137
 JH290_14790 NONE
 JH290_14785 NONE
         hda 3357693 .. 3357720 -  -9.8  -2.71924   CACCCCGCTGGAAAC        CGGCGGCGGCATG CTG CACG-CGCTGCCG        TTGCTGGGCGATGCG  57 469
 JH290_14755 3353737 .. 3353770 -  -7.5  -5.00138   CACCCAAACGAAAAA    CGCCC-G-GCTGCAC ATCCAA GTGCAACACCGGGCG     ATTTCACGTCCTTGT  93 128
 JH290_14750 3352471 .. 3352502 -  -7.8  -3.04144   TCGCTACGTCCAACA      CGC-CTTGGCCGCCG CGG CGGCGGACGTGCGCG      TATGGGTGGCGCAAG  53 327
 JH290_14665 3336282 .. 3336317 - -11.8  -2.52896   GCATCCGTGAACCGA    TGTGCGCGCCGC-GTCG TGC CGACCGCAGCGCGCAGT    TGCTCAGCGCTTGGG  65 29
 JH290_14660 3335621 .. 3335648 - -19.2    -4.564   AACGTGAAACCAAAA        GAGCCCGGCGCA GCGA TGCACCGGGCTC         TCTCGCACCACTCTA 100 48
 JH290_14620 3329090 .. 3329100 -  -2.4  -2.61681   CGGGAATTGGAGAAG                 CTGG AAA CCGG                 GACCGGTCAGGGAAA  38 83
 JH290_14615 3327818 .. 3327847 -  -9.9  -2.70932   GTTGGCTGCGAAGCA       CGACGCGCCCAGA CTGA TCGCAGCGCGTCG        TTGGTACGCGCAGCG  60 83
 JH290_14610 3326808 .. 3326822 -    -7  -3.14132   GCCGCGCGCCAGCAA               GCGCGC ACG GCGCGA               CGTGTACTGCTACTT  52 154
 JH290_14585 NONE
        ruvX NONE
 JH290_14575 3319998 .. 3320027 - -20.8  -4.96388   AAGCACGAAACAAAA       CGGGCGTCGCGA TGATTG TCGCGACGCCCG        TGAGAAGGCGGTCCT 100 95
 JH290_14570 3319135 .. 3319185 - -30.6  -3.18383   AGCCCTATTCAGCAA GCCGCCAGCTGCGTACATCGACGC CTT GCGCCGATGTACGCAGCCAGCGCC GCGGTCAGCTGGAAA 100 30
 JH290_14565 3318201 .. 3318220 -   -15  -5.21709   CGCGAGATGAAAAAA            CGCTGCGG TCTC CCGCAGCG             TTTTGTCTATTCGAA 100 240
 JH290_14550 NONE
 JH290_14545 NONE
 JH290_14540 NONE
 JH290_14535 3310257 .. 3310269 -  -4.1  -3.15544   GCGCAGCGCGACCAA                CAGCT CAG AGCTA                CTGCACACCCAGGCC  47 23
 JH290_14530 3309274 .. 3309306 - -16.3  -3.57144   CCGGCCACCTGGAAA      CGCTGGCGCGCAG GGAGATG CCGCACGCCAGCG      CACCACTCACTTACC  91 32
 JH290_14520 3307192 .. 3307211 -  -4.4  -4.62336   ACTCGATTCGAAAAA            TTTCATTT TGGA AAACGAAA             TTCCCCCGACGAGTC  72 87
 JH290_14515 NONE
 JH290_14510 NONE
 JH290_14505 3302498 .. 3302510 -  -4.8  -3.67597   CGGCCTAGCGAAGAA                CACC GCGCA GGTG                CTGATGCTGTTTGCG  55 468
 JH290_14485 3297973 .. 3297984 -  -7.2  -3.28712   CGCTGCCGGTCACAA                GCGC GTGA GCGC                 GGCTGTGTGCGATGG  58 304
        paoA NONE
 JH290_14475 NONE
 JH290_14470 3294087 .. 3294115 -  -4.5  -2.62184   CCGTGGCTGACAGGA       GCCGCCACTGCA TTCACG CGC-GCAGCGGC        TCAGGCAGATGCGGC  41 10
 JH290_14465 3292627 .. 3292641 -  -8.5  -3.77196   TGACCACGCAGCAAA               GCCGC GCGCA GCGGC               GGTGTGCATGCGCGA  69 480
 JH290_14460 3291781 .. 3291792 -  -7.2  -3.06492   CTATCTACGCCAACA                GCCG CGCG CGGC                 TCACTCCGGATCGAT  54 26
 JH290_14455 3290605 .. 3290625 -  -4.5  -3.01712   CTTGTTGCTGGAAGA            CGCCGCCAG CTC CCGTCCGCG            AGGTCGCAAGCTCAG  45 37
 JH290_14450 3289057 .. 3289115 - -13.9  -3.72576   CTGCGGTCGACCAAA CCGACCCG-AGATGCCATGGAGCTGTTG CAGG CAACAGCTCCATGGCGCCGGCAAGGCAG CGTTAACCTGCCCCG  84 28
 JH290_14435 3286026 .. 3286043 -  -8.3  -2.72991   CGACACCCTCAACCA             GCGCGCG TTTG CGCGAGC              CGCTCGAACAATGCG  54 1
 JH290_14420 NONE
 JH290_14415 3281413 .. 3281441 -   -16  -2.53213   TAATGCGCTAATGCA       GCTGCGCGCCGGC ATCC GCCAGCGCGC-GC        TGAATGCGGCCTAGC  79 36
        gpmA 3277558 .. 3277575 -  -3.3   -3.1372   CAGCGCGCACCAACA             GGCACGC CGCT GCATCCC              GGCCACCGCCGCCAC  44 110
 JH290_14385 3277122 .. 3277143 - -10.1  -3.36656   AAAAGTCACACAACA           GGCGAACGC CCTA ACGTCCGCC            ACCGCGCGCATCCAG  66 77
 JH290_14380 3274687 .. 3274715 -  -5.2  -3.57144   CTCGCGATCGGCAAA       GCG-GCCGTAGCC ATAC AGCGACAGCACGC        TGCCCAGCGCCAGCA  55 240
 JH290_14320 3259451 .. 3259478 -    -7  -3.29043   AAGGCGCCGCCACAA        GCCCCGATAA CAGGTGAC TTAGCGGGGC         TAACAAAACGTAGCG  55 23
        creB 3256635 .. 3256651 -  -9.4  -2.52464   GGCCGGCGCAAGCCA              GCGCGA ACACA TCGCGC              CCGACCGCCAGGCCG  56 126
        creC 3254835 .. 3254893 -  -9.6  -3.28924   GATTGCGCGCGATAA GGCGTCGCTGACACCGATGCGGCATGTGC TCCG GCACCTGCCGCATCCACG-CGGC--CGCC AGCCGCCGCAGTTCG  63 72
        creD NONE
 JH290_14285 3251715 .. 3251740 -  -8.9  -2.62184   CGGCCGCCCAGATCA         CCGCAGGCGTC CTGT GACGCATGCGC          CACCGCACTGTAAGC  53 107
 JH290_14280 NONE
 JH290_14275 NONE
 JH290_14270 NONE
 JH290_14265 NONE
        gltX 3247119 .. 3247135 -  -2.2  -2.87132   GTGCTTGGTCATACA             GGCTCCG GCGT CAG-GCC              GCTCCAATCTTGATG  40 19
 JH290_14255 3246319 .. 3246337 -  -4.4  -3.91716   CGAGCGCCGAAATAA             CATCGGGA ACG CCCCGTCG             CGGCCTAGGCCGCTC  58 285
 JH290_14245 NONE
 JH290_14240 NONE
 JH290_14235 NONE
 JH290_14230 3238350 .. 3238389 -  -6.4  -3.14211   AGTGCGCGTCATCAA TGCCGGCCCGCGTGGCGT TCGCTT ATGCCCCGCG-GC-GGCA  CCGCGTTGCTCGCCA  53 121
 JH290_14225 3236742 .. 3236757 -    -6  -3.66356   ATCGGTAACGCCAAA              TCGCGC GCAA GCGCGT               TCCTACGGGACCTGC  57 498
 JH290_14215 3234681 .. 3234691 -  -5.4   -3.8211   CGCGATGCACAACAA                 TTGC GTG GCAA                 CCGGCAGGACGCGAT  60 265
 JH290_14205 3233063 .. 3233084 -  -4.4  -3.51232   GGCGCGGCAAACCAA           TGGTGCTG TCTTGG CAGCATCA            CAGGATGGCACGGGC  52 311
 JH290_14185 3227818 .. 3227836 -  -4.4  -4.11216   GCCCCACGCCGAAAA             CAGCGGGC CTT GACCGCCA             AACGTCCCGGCGCCG  63 118
        fdhF 3217682 .. 3217699 -  -2.5  -2.64099   TTCGGCCATCAGAAT             CTCTCCG GGTG CGGTGCG              CGGGCCGGCGGCGCA  38 1
 JH290_14150 NONE
 JH290_14145 NONE
        cydB 3214733 .. 3214749 -    -8  -3.06183   GCGACGCCTATCGAA              GCGATG GCTTA CATCGC              TGATTGCTCCAGGCA  54 45
 JH290_14120 3209926 .. 3209945 -    -7  -4.21439   GAATGTGAATACAAA            TCCCCGCG CTGG CACGGGGT             CTGGCGAGGTTTACG  69 86
 JH290_14115 3209672 .. 3209689 - -14.1  -5.65177   ATAGGCATAAAAAAA             CGCGGCG CAAG CGCCGCG              TTTCTGGTTGCGAAG 100 51
 JH290_14090 3203398 .. 3203451 -  -7.4  -2.78596   CATGCCGCGACGATA GGCAGCCGG-CAGTGCGGTACGCGTGA AGC TCA-GCCTTCGGC-CTGACCGGCGGCC GGCGCCTGCGCAGGA  52 1
 JH290_14085 3203091 .. 3203127 -    -3  -3.28712   CCGGCGCTCGCACAA   GGCAAGCG-CTGGCGG GGTGTTG CCGTCAGACG-TCGCC   GGGGGGCACCGCAGC  46 14
 JH290_14080 NONE
 JH290_14075 3201990 .. 3202028 - -14.4  -3.23216   CTTGATCAGGATCAA   CCCGCGCACCGTGCCGCA GGA CGCGGCACGGCGATCGCG   CACTACCAGCCCAGC  80 28
        ubiM 3200460 .. 3200510 - -14.7  -3.75665   GCAGATGTGACCAAA GCCGGCTGCGCCTGGGTGATTCCA CTGC TGGAAGCAGCCTTGCGCAGC-GGC GATGCGCCCACCGCG  83 256
 JH290_14045 3196483 .. 3196538 -  -6.1  -3.19157   CAGTAACGGCAGCAA TG-GCAGAGTCTGTATGGCAGCGCCCGC TTG GCGGACGCCGCG-CACAGGCAC-GCTCA GGCGCGCTTACTCGC  51 33
 JH290_14040 NONE
 JH290_14035 3193182 .. 3193194 -  -4.8  -3.80461   CAAGGCACGATCAAA                CTGC GCCAA GCAG                CAACCGCTCCAACAC  58 56
        rraA NONE
 JH290_14015 3187587 .. 3187630 -  -7.8  -2.78384   GTTGCGCGGATCATA GCGAGCCAGGCCGGTGGGCG ATAG CGCCGACGGGCTACGCGCGC AGATGACCTGCAAGC  52 248
 JH290_14010 3186193 .. 3186205 -  -4.7  -3.05384   TTGCTGGCCACGCAA                GGCGG CGG CCGCG                CATAAGGCCGCAATC  47 105
 JH290_14005 3183916 .. 3183959 -  -4.4  -4.25104   GGGGCTTGATGAAAA GCTGCCGGCGTCCCTTCTCCC CTC GGGAGAAGGTGCCCCGT-AGG GGCGGATGAGGGTAC  66 203
 JH290_13990 3180434 .. 3180461 -  -2.6  -3.54129   GATAGCTGCTCTAAA        GCCCGCATCGCCG TCG CAGC-ATCTGGGC        AGGCCAGCGCTGTGC  49 59
 JH290_13985 3179873 .. 3179890 -  -3.4  -4.10657   TGAGACGGCGCAAAA             CGCGCAG GCAAG CTG-GCG             CACGCAGCCGGCATG  61 429
 JH290_13960 3175537 .. 3175564 -   -12  -3.13403   GGGCTTTTACGAAGA        CGCCGCACAGCGC ACG ACGCTGCGCG-CG        ATCCGGCTCGCCAGC  66 284
 JH290_13935 3171943 .. 3171959 - -12.3  -3.53012   CTCGGGCGGTGCAAA              GCGGTAC AGG GTACCGC              AGTGCAGCAGGTGCT  74 54
 JH290_13930 3168985 .. 3168996 -  -7.2  -4.98531   CCCGGAAATGAAAAA                CGCG TCGC CGCG                 CGCCAGTGAACTGAA  93 305
 JH290_13925 3168206 .. 3168217 -  -7.2   -4.2828   TTCCATGGACGAAAA                GCGC GCGA GCGC                 TTAGTTGTTGTTCGA  76 26
 JH290_13920 NONE
        nadD 3166254 .. 3166289 -    -9  -3.16267   GTGAATTATAGGCAA    GTCCGGCCG-CTCGC GTGTTCA GCTAGCCGGCCGAAC    GCAGCCATACAGGCC  61 8
        rsfS 3165747 .. 3165776 - -17.9  -3.58343   CCGACCACGCGCAAA       CACGAACGGCGCC CGAG GGCGCCGTTCGTT        GGTGTGACGCAGCTG 100 48
        rlmH 3163546 .. 3163565 -  -4.9  -3.30124   CTGGACGCTGCACAA            TCTGCGC TCAGTT GCGCTGA             TCAGGCCAGCTGCAC  50 60
 JH290_13880 NONE
         rng 3155526 .. 3155536 -  -4.6  -3.04144   TCGGGAGTCGTAAGA                 GCAC GCA GCGC                 CCCGTACGCACGATC  47 142
 JH290_13870 3151357 .. 3151370 -  -5.2  -3.53091   AGCCGTTTTCCGAAA               CGCC GGAGCT GGCG                CAGCAGCATGCCGAC  54 248
        tldD 3148904 .. 3148916 -  -4.7   -3.9461   GCGGGCCAAGAACAA                GCCGC CGC GCGCC                TACCGCGAGCTGTTC  61 390
        pmbA 3146826 .. 3146859 - -14.5  -2.52676   CAGTGCGGGAAGCCA     TGGGTCCGCCAGCGC CGGG ACGCTGGCGGGCGCA      GTTACTGGGCGGGTG  74 43
 JH290_13845 3146308 .. 3146343 - -11.8  -4.58395   GTGACTTTCTAAAAA    CGCCAAAGGCCCGGCA TGAC TGCCGGGCCTTTGTTT     TACGCGTAATCAAGA 100 42
 JH290_13815 NONE
 JH290_13810 3137740 .. 3137777 -  -6.1  -3.78778   GTAGCACACCAACAA   CGCCCGGCTGGA-CCGGC GGT GGCGGCTCCAGTGGTGCG   GGCCGTTCCGGCACG  62 434
 JH290_13800 3136397 .. 3136407 -  -8.2  -3.21276   TCGCTGGTCACAACA                 GCCC GGA GGGC                 GGGGCCGTGATGGTC  56 214
 JH290_13755 3126577 .. 3126599 - -17.7  -3.80625   GTCGCACAATGCAAA           CGGCCCGCC GAAGA GGCGGGCCG           TCAGGATGCACAGCG 100 46
 JH290_13750 NONE
 JH290_13745 NONE
        gorA 3122642 .. 3122666 -  -4.9  -3.57144   GCCGCGATCCGCAAA          CGCATGCCGCA ACA TGCAGCACTCA          ATGCATCAACACAAT  55 23
 JH290_13730 3121160 .. 3121178 -   -16  -4.45544   CGGCAGCAATGAAAA             GAGCGCGG AAT CCGCGCTC             TTTTTTTGTCTGGCG 100 183
 JH290_13710 3113823 .. 3113839 -  -9.3  -3.40403   GTTTGCCGATCATAA              GCTGGCC ATC GGCCTGC              AGGTGTTCAACGTCA  63 179
        apbC 3106343 .. 3106367 -  -9.2   -3.1855   TCCTTGAAGACGGAA         GGCGGCGGGCC GAGC GGCCCGC-GCG          AAGACGGCGAATTCT  61 74
 JH290_13690 3105257 .. 3105281 -  -8.5  -3.05521   ATCAGAGCGCCAAGA          TCCCTTCTCCC ATC GGGAGAAGGTG          CCCCGAAGGGGCGGA  57 495
        rimO 3102306 .. 3102347 - -18.8  -3.32498   CATTGCACACACCAA GCCGCCAGCGGCGCTGCCCG CCCG CTGGCA-CGCCGCTG-CGGC TAGACCATCTGCAGG  93 25
 JH290_13655 3099550 .. 3099566 -  -2.9  -3.29471   CCGCCAGTACATCAA              TCGCCTG CTG CAGGAAA              AACAGGAGCGACGCG  46 403
        nudK 3097031 .. 3097043 -  -7.7  -3.27525   CGGCGGCAAACCCAA                TGCTG CAC CAGCA                ACCATTACCGGCTCG  56 460
 JH290_13630 3093270 .. 3093297 -    -9  -3.78934   CGCGTCTGACAAGAA        TGCGGATGCGGC TCCG GCAGCCCCCGCA         CCCGCCACGCAGTGA  71 131
        prmB 3089481 .. 3089536 -  -2.5  -2.83894   ACCAGCAGCACGACA TCGCTCAGATGTGGCCGGTGCGTGCGTG CCT CA-GCGCGCACTGGCCAGCTC-G-GTGA TGCGTGCGCTGTGTG  40 0
 JH290_13605 NONE
        aroC NONE
 JH290_13595 3086835 .. 3086888 -  -2.1   -4.4784   GAAAGGGGAAAGAAA GGGAGCACTGCGGGCTGGGTTCGGGG AAC CTCCAAAGCTGG-CCGCGGAGGTCCC CTATCGTTTGGTCGT  65 26
 JH290_13590 3085702 .. 3085760 -  -4.6   -2.7204   CAAGGGACAAAGGTA GGAGCGCACTTGTGCGCGATGGGGCGTTA CCGG TCAAGCCGCATCGCGCGCAAGCGCG--C- TCCTACGCCGCTGCA  44 44
 JH290_13585 NONE
 JH290_13580 NONE
        truA NONE
 JH290_13570 3081431 .. 3081447 - -11.5   -5.1675   CCACGCATGAAAAAA              GCCCCGG AAA CCGGAGC              CTTGAAGAGTTCTCA 100 201
        trpB NONE
 JH290_13555 NONE
 JH290_13550 3077726 .. 3077771 - -18.4  -2.78679   CGGCCTGAGCCAAAG CGCCAGGCGATCATGCCGGAA CGTAT TGCCGGCATGATCGCC-GCCG TTGGGTACCTGCATA  86 71
 JH290_13545 NONE
        glmM 3075323 .. 3075350 -    -4  -4.60143   ATACAGCACATAAAA        CGTCGCGGCCTT GGCG AAGACCACGCAG         ACGCCGATGATCAGC  72 44
 JH290_13535 NONE
 JH290_13530 NONE
 JH290_13525 NONE
 JH290_13520 NONE
 JH290_13515 3069335 .. 3069345 -  -5.4  -3.26036   GTCAGAAAAAAATAT                 TCAG TCG CTGA                 TTTTACTTAGCATCG  51 445
 JH290_13500 3066549 .. 3066559 -  -8.2  -3.63569   TTAATGGGTTAACAA                 GCGG CCG CCGC                 ACGCGCGATGGCCAG  65 8
        secG NONE
 JH290_13490 NONE
 JH290_13485 NONE
 JH290_13480 NONE
 JH290_13475 NONE
 JH290_13470 NONE
        nuoE NONE
        nuoF NONE
 JH290_13455 NONE
        nuoH NONE
        nuoI NONE
 JH290_13440 NONE
        nuoK NONE
        nuoL NONE
 JH290_13425 NONE
        nuoN 3050915 .. 3050937 - -10.5  -2.80935   AGTTTAGTCAGGACA           CGTGCCCGC ACACA GCGGGCACT           AGCTATGCGATCAGG  60 36
 JH290_13415 3050545 .. 3050567 - -19.2  -5.00616   CGGTTCCGGAAAAAA           CAAGGGGCCC GAT GGGCCCCTTG           CGTGAAAAAAGCCCG 100 128
        rimP NONE
        nusA NONE
        infB 3045498 .. 3045524 - -19.4  -5.47218   CCGGAGCCAAAAAAA         GACGTGGGCGGC CAG GCCGCCCGCGTC         ATGCAGCGTCGGGGC 100 62
        rbfA 3044983 .. 3045003 -  -4.7  -3.16564   GTCTCACGGGATCAA           CGC-TCGC TCGGGC GCGATGCG            GCCCGCATGGTCAAG  48 75
        truB 3044055 .. 3044065 -  -2.4  -3.71321   ACTAAACCTTAACAA                 GCTG CTG CGGC                 GTTCAGACCGTTGAA  52 8
        rpsO 3043593 .. 3043616 - -19.6  -4.24384   ACGACCAAAACGAAA          CCGCGGCGCA TCGC TGCGCCGCGG           CGGTAGGACCCGATT 100 39
         pnp 3041300 .. 3041315 - -11.8   -5.4505   TCGTCCAACAAAAAA              GCGGGC CGAA GCCCGC               TTTTTCTAACGCACA 100 52
        purE NONE
 JH290_13355 3036502 .. 3036525 - -10.2  -2.70932   CTGCTCGCTCAACCA          GCCTGGGGCA CCAA CGCGCCAGGC           GATGCCACCGCGTTA  60 162
        grxD NONE
 JH290_13340 NONE
 JH290_13335 3033918 .. 3033933 -    -9  -4.12532   GGCGCCACAGATAAA              GTGCTG CCGG CAGCAC               CACGCGCTCGTTGGC  79 167
 JH290_13330 3030022 .. 3030051 - -16.5  -4.08767   CTCACCCGCCCAAAA       GAAAACGGCCGGG AGAC CCCGGCCGTTTTT        GCAACATGCAACACG 100 50
 JH290_13325 3028544 .. 3028572 -  -8.1  -3.37895   CGCAAGACAGACGAA        CGGTCGCGTCTAT ACG ACGAACGCGACCA        CGGCCTCATTACTCA  60 38
 JH290_13320 NONE
        pilV NONE
 JH290_13310 NONE
 JH290_13305 NONE
 JH290_13300 NONE
 JH290_13295 NONE
 JH290_13290 3021440 .. 3021471 - -17.4  -4.60797   TGCGCAGACATAAAA      CAAGAAGGCCGCGA CTAG TCGCGGCTTTCTTG       AACATCTTGGCGCCC 100 33
        uvrB NONE
 JH290_13275 3018210 .. 3018222 -  -3.3  -3.85698   CGTGCGTCTGAGAAA                GCGAT TTC AGCGC                TGCCCATGTCCGGCC  56 357
 JH290_13270 NONE
 JH290_13265 3015900 .. 3015933 -  -7.5  -4.07687   AGGCTTTCGCCAAAA     GGATTCACATC-TGCC ATT GGCTCGATATGAACCC     AGAACTGCCTTCCGC  70 296
 JH290_13260 NONE
 JH290_13255 NONE
 JH290_13250 NONE
 JH290_13245 3012397 .. 3012409 -  -3.4  -2.78384   TCGGCGTCCATCACA                GCTA TCCGT TAGC                GGCGCCGTGCAAGCA  40 21
      virB11 NONE
 JH290_13235 3010352 .. 3010377 -  -6.1  -3.35798   ATGGTCTAGCGACAA         CTACTGGCTGGC ATC GCCAACC-GTTG         GGTTTGCAATCGTTA  52 38
 JH290_13230 NONE
 JH290_13225 3009605 .. 3009617 -  -4.7  -2.64803   GGACCGTCAAACCTA                TGCCG GTC CGGCT                TCCTGGTTTCAGTCT  43 34
 JH290_13220 3007094 .. 3007113 -  -2.8  -2.69151   GCTCCTTAGACACGA            CGGCCATCA TGC TG-CGGCCA            CTTGCCGCTTACTGC  40 12
 JH290_13215 NONE
 JH290_13210 NONE
 JH290_13205 3004108 .. 3004128 -  -2.5  -3.59402   GTGAGATCAAACTAA            TAAAGCAAC ATT GCGGCTCTA            GAGTCATAAAGCCTA  49 413
 JH290_13195 3002600 .. 3002614 -  -6.4  -5.06414   CGTTTGCAACAAAAA               GCCAAG CCC CTTGAC               CGCCCAGAGTGATCC  86 441
 JH290_13185 3001253 .. 3001277 -  -6.4  -3.41051   GCACTCGGAGTATAA         GACC-CAGGCG CCTG CCCCTGCGGTC          CAGGCGATCCGCCGG  57 488
 JH290_13180 3000356 .. 3000381 -  -8.2   -4.2123   GACCGACCCAAGAAA         GCAATCGGCG GCATGA CGCCGGCTGC          TTATGCCCAACATCT  76 252
 JH290_13165 2997981 .. 2998006 -  -3.9  -3.14344   GACGGCGCGGAGGAA         CCGGAGTGTAC GTGG GTACATGCCGA          TTCCGAGCACCGGCC  47 110
 JH290_13160 2997869 .. 2997898 -  -4.2   -4.4078   GGCGTGCAACGAAAA       CAGAGCGGCATC GCAGAG AATGTCGCCCCG        CTTGCAAAACCCTCT  69 54
 JH290_13145 NONE
 JH290_13140 2988072 .. 2988084 -  -5.5  -3.14344   CATGGCTGCCATCAA                GACGC TGC GCATC                ATTGCCCTCCCTGGG  51 24
 JH290_13135 2986385 .. 2986398 -  -4.5  -3.35798   AGGCGTCACCGATAA               CGCCGC ATC GCG-CG               CTGGCGCGCCCCTAC  48 37
 JH290_13130 2984771 .. 2984794 -    -6   -2.9155   CCGTGCAACAGGACA          CCAAGCAGGCC GGC GCCCTG-TTGG          TCGAAAGCCTGGTGG  48 509
        thrS 2981586 .. 2981616 -  -9.6  -3.18274   CCCAGGGGAATCGAA       CCGGCGCATCCGGA TCA TCCAGACCGGCCGG       GGTTGGCTCACGCTG  61 33
        infC 2980941 .. 2980960 -  -3.5  -3.04398   GCTCCCCGGCAAAAC            CGGGC CGCGCAGTAT GCCCG             TTGCCGGGAATTCTT  43 98
        rpmI NONE
        rplT 2980041 .. 2980064 - -14.6  -4.35524   CCCTGAAACGCAAAA          GGGGAAGGAC TCGC GCCCTTCCCC           CTGCATATCTGCGTT 100 186
        pheS NONE
 JH290_13095 NONE
 JH290_13090 NONE
 JH290_13085 2975732 .. 2975746 -  -2.7  -2.78384   CGGCCTGCGATTATA               GCGGC TTTAT GCGGC               GCTTTCCTAGCGTCG  39 32
 JH290_13080 2975585 .. 2975608 - -14.6  -5.10461   GCGACGCAACAAAAA          GGCCCACGTC TTGC GACGTAGGCC           TGTTGTTTGGTCGGG 100 33
 JH290_13075 NONE
 JH290_13070 2972941 .. 2972965 - -12.1  -2.93381   CAAACCTTCAAACGA          GGGAGCCCGCA CCT TACGGGATCCC          ACCTTTTCCACGCTG  67 87
 JH290_13065 2971268 .. 2971288 - -18.3  -4.03234   CGCCCGCGAGAGAAA            GGCGGCTGC GAT GCAGCCGCC            CGCGGCGCAAGGTGC 100 67
 JH290_13060 2969894 .. 2969921 -  -4.9  -2.52464   CCGCTCGCGAAGGCA       CGCGCGCC-G-GCA GCC TGCACAGGCGC-CG       ACGTCCCCGATGCCC  43 53
 JH290_13055 NONE
 JH290_13050 NONE
 JH290_13045 2966576 .. 2966590 -  -4.9  -2.92192   TGGCAGCGAAGCAGA               CGCGC TCATC GCACG               GCCTCCTGCGTACGT  46 16
 JH290_13040 NONE
 JH290_13035 NONE
 JH290_13030 2962764 .. 2962786 -  -3.5  -5.16237   AACGTGATCAAAAAA          GCGCCTCCTCA ATG TGA-GAG-CGC          TGCCTCCGAAGAGAG  82 11
 JH290_13025 NONE
 JH290_13020 2961081 .. 2961135 - -10.5  -2.72379   CCAATGTTCGAATCA GCGCGGCGGCGGTTGGATGCAT-GCA CGCA TGCTAGGCCACACACCGCCGCCGTGC ATCACGCCAGCTGTT  60 27
 JH290_13015 2960583 .. 2960610 -  -5.4  -2.63631   GGAACGCGGACACTA        CGCGAACGCGGG CCCG CACGCGTTAGGG         AAGCGTTGGCGGCTC  43 20
 JH290_13010 2959189 .. 2959212 -    -3  -2.78715   AAGGCGCGCAGCATA          CCGTGGCCGGC CAG GCAGACC-CAG          CTGCCTGCGCAATGT  40 336
 JH290_13005 NONE
 JH290_13000 NONE
 JH290_12995 NONE
 JH290_12990 NONE
 JH290_12985 NONE
 JH290_12980 2953122 .. 2953141 -   -15  -3.29511   TGCATGGCGTGAGAA            GCGCAGGC TGAG GCCTGCGC             GCATCGTGGGATCGT  82 276
 JH290_12950 2945936 .. 2945966 -  -6.7  -4.28994   GAGCAGTTATCAAAA      CGACTGCG-CAGCC TCAA GGCGGGCGCGGCCG       GTGCTCGGAATCGGC  73 384
 JH290_12935 2941194 .. 2941212 -  -6.6  -3.59583   ACAAGCAGCGGGAAA             TCGCCTCC AAG GGCGGCAA             GGCAGCCCATCAGAG  56 279
 JH290_12925 2940145 .. 2940159 -  -3.4  -3.81259   AGATAACGCAGCAAA               CGCGCG GCA CACGCC               GATGCCAGGCCCGGC  54 67
 JH290_12915 2938680 .. 2938707 -  -3.4  -2.92171   CAGACCGGCAAATGA        CCGCGATGCAACC TTT GATTGCAGC-CGA        ACGTAGCTGCGCCCG  42 144
 JH290_12910 2936883 .. 2936910 -  -6.9  -3.53224   CATGCCTGGCTGAAA        GTGCGCGCGTG CCTGGC CACGCGTTCAC         GGATGGGCCACTGCC  57 75
 JH290_12905 2936099 .. 2936112 -  -3.7  -4.45544   GCTGATCAACGAAAA               CCGGC TCTC GCCGC                GCGACCCCAAGCACC  70 273
 JH290_12880 NONE
 JH290_12875 NONE
 JH290_12870 NONE
 JH290_12865 NONE
 JH290_12860 2926915 .. 2926936 - -12.3  -3.05596   CACCGGCCCATGCAA           CGCAGCACGC ACC GCG-GCTGCG           CTAAACAAGGCCGCG  68 60
 JH290_12855 NONE
 JH290_12850 2923854 .. 2923891 -  -6.1  -4.15748   TCACTCCAAAAAAGA   CGCGGCCAATCG-GCACC GTA GGAGCGCGCTTGCGCGCG   ATGAGGCTGTCCCGG  67 129
 JH290_12845 NONE
 JH290_12840 NONE
 JH290_12835 NONE
 JH290_12830 2919688 .. 2919700 -  -5.5  -3.88498   CCCCCAGAGAGGAAA                GCAGT GAA ACCGC                GCGGCGTGCGCCGGC  62 56
 JH290_12825 2917599 .. 2917614 -    -6  -3.86202   GCGCACCACACCAAA              CCCGCG TGGG CGCGGC               TGCGCAGTGGCAGCC  62 491
 JH290_12815 2914045 .. 2914069 -  -5.6  -3.27774   TACTGCAACCATCAA          CTGGCCGATG CGAAC CGCCAGCCAG          GCGCCACCCGTCCAG  52 91
 JH290_12810 2913612 .. 2913626 -  -7.1  -3.24924   CGTCGATGCACAACA               GGTGC TTGGC GCACC               TTCCCGGTGAGCCAC  53 91
 JH290_12795 2909393 .. 2909419 -  -2.3  -3.96506   TACGTCAAAAGACAA        GCATCCAG-AACG CGC CGCTACCGG-TGC        AACATAGGCGGCTCG  57 96
 JH290_12790 2906468 .. 2906495 -  -8.4  -2.60065   ACCTCACAAAGACAT        GGCATCCGCGACG TTT CG-CGTAGATGCC        CGTAACACGGCGCGC  53 437
 JH290_12785 2903360 .. 2903375 -  -6.8  -3.05463   AGCTCCTGTAGGCAA              CG-GCGC AGT GCGCACG              CGGTTGCAGTCTGCG  51 134
 JH290_12780 2900468 .. 2900487 -  -2.8  -3.16218   TACAACCAACAGATA            CCG-CACGA CAG TCTTGGCGG            GTTAACGCCCGCCGA  44 496
 JH290_12755 2898171 .. 2898186 -  -7.5  -3.03124   TTTGAGCCTCTAAGA              CCGGC GTAATT GCCGG               TCTTTGTTTTTGAGA  54 265
        rsmD NONE
        coaD NONE
 JH290_12735 2894255 .. 2894289 -    -7  -3.19192   CCGGATGGAATGCAA     CGTCAGCAGCATGG TGCGTTT CCACGCCGCGGCCG     GATGCGCCCTCCCGC  53 61
 JH290_12730 NONE
 JH290_12725 2893839 .. 2893851 -  -3.3  -2.52464   GTCGGGGGGAAGTGA                TCACG GGG CGGGA                GGCTCCTGTTCGTAC  39 13
         ggt 2891844 .. 2891854 -  -2.4  -3.54424   GGCCACTGCGCCAAA                 CCGC ATT GCTG                 CTAGCGAAGGTGTGG  49 232
 JH290_12715 2889992 .. 2890033 - -15.1  -4.93365   CGGGAGAAGGAAAAA CCGCGTCGACGCGCTGAAG CCTG CCTCAGCGGGTCGACGCCT  CGATCGCAGCACTTA 100 9
 JH290_12705 NONE
 JH290_12700 NONE
 JH290_12695 NONE
 JH290_12690 2882756 .. 2882788 - -19.9  -3.30918   AGCCACACGACAACA      CGGTTGCGGCGACCC ATG AGGTCGCCGCAACTG      CATTCGCACACGTAA  95 66
 JH290_12680 2880332 .. 2880357 - -12.7  -3.05343   GGGACATTCCGAACA         CATCCTTCTCCC ACC GGGAGAAGG-TG         GCGCGCAGCGCCGGA  71 196
        queA NONE
         tgt 2877936 .. 2877979 -  -3.7  -2.72227   AACAGCCGGGAATTA TGCCATGCGGGTCCC-ACGC CGTCC GCGCCAGGGCACGGACGGCA GGTCTCAGCTGGATT  42 30
        yajC 2877286 .. 2877299 -  -3.7   -4.2828   GTGCATGGAGCAAAA               GCGCC CGGG GGCGT                GGTCCGACTTCGTGC  66 224
        secD 2875293 .. 2875304 -  -7.2  -3.53012   GCGGCGTTGCGCAAA                GGCG CGCG CGCC                 GCAGCAGGACTCGCA  60 43
        secF 2874193 .. 2874223 - -24.2  -3.90586   ATACGACGCCAGAAA       CGACAAAACCGCGC AAT GCGCGGTTTTGTCG       TGATCGAAGATCGAT 100 47
 JH290_12645 2873305 .. 2873328 -  -7.4  -2.53213   TAACGTCTGAATTTA          GCCGAA-CCGC GAA GCGGTTTCTGC          TTGAATGAATTGTTA  50 38
 JH290_12640 2872613 .. 2872635 - -17.8   -3.3482   TAACGCTTGAATTAA           GCCGAGTTGC GAA GCAACTCGGC           TTAAATGAGTTGTTA  93 394
 JH290_12615 NONE
 JH290_12610 NONE
 JH290_12605 2862175 .. 2862196 - -12.3  -3.49475   GTGACCGGTAGAGAA           GC-TGCGCGC GTT GCGCGCATGC           TTGGCGGGTACCACT  74 232
 JH290_12580 2853983 .. 2854002 -  -8.6  -3.17688   GAACCATGCCAGCAA            GCCTGCGCA ACG TGCG-AGGC            GACCAGCTTTTTATC  58 219
 JH290_12560 2842906 .. 2842921 -  -7.5  -5.24129   TTTGTGCACAAAAAA              GCCGC GCTGAG GCGGC               TTTTTTTAGACGCAA  93 107
 JH290_12555 2841864 .. 2841874 -  -4.6   -3.8823   GGCAAGCACAAAAGA                 CCCG CCG CGAG                 ATCTTACTGGCCGAG  60 358
 JH290_12510 NONE
        fdhD NONE
 JH290_12500 NONE
 JH290_12495 2823947 .. 2823988 -  -7.1  -3.35046   CGACGTTTCGAAATA CGCTCGC-CTGCGCAGCCTG CCC CCCGCAGCGGAGAGCAAGCG CCTTAACGTTACCCG  55 34
 JH290_12490 2822215 .. 2822227 -  -4.8  -3.51825   TCATTTCAATCAGAA                CCAG CAGCC CTGG                TAGGAGCGCGCTCGC  53 102
 JH290_12465 NONE
 JH290_12460 2814854 .. 2814874 -  -8.9   -2.8949   AGCAAAGAAAAGTGA            CTCGCGCCC GAA GGGCGTGAA            AGCCCTGCTTCTCGC  55 154
 JH290_12455 NONE
 JH290_12450 2811710 .. 2811725 -  -2.4  -2.89683   AGGGCATGTGAGAGA              GCCCGC GTCA GCGACC               CGTCTTGATCTCGGT  40 17
 JH290_12445 NONE
 JH290_12440 NONE
 JH290_12435 2807196 .. 2807227 - -14.4  -4.15565   CGCATCATGGCAAAA      GCCTGCCGGCGCTGC AGT GC-GCGCCGACACGC      GTGGCGCTAGCGGGC 100 32
        potA 2805903 .. 2805928 -  -2.6  -3.14344   GACGGCGCGGAGGAA         CCGCAGTGTAC GTGTG GTACA-TGAGG         ATTCCGAGCACCGGC  43 98
 JH290_12425 NONE
 JH290_12420 NONE
 JH290_12415 2803854 .. 2803864 -  -5.4  -3.77722   CGCAACGAGGAACAA                 TCCA GCG TGGA                 GCAACGCGGCTACGA  60 262
 JH290_12405 2801648 .. 2801673 -  -5.3  -4.66537   TTTGCCAAGACAAAA         GTTACTCGCGCC ACA GGCGCG-GAAGC         CTTTGCTTTTGCTTT  74 269
 JH290_12355 NONE
 JH290_12350 2789605 .. 2789631 -  -7.8  -3.74872   ATGCAGTCCATGAAA         CCGCGCAGCTCA AGG CGCGGCGCGCGG         CGATGCAGGCATGGC  65 143
        petA NONE
 JH290_12340 NONE
 JH290_12335 2786688 .. 2786710 - -12.7  -2.90901   ATAGTGCTAAGGACA          CGGTCGCCGC ACTG GCGGCG-CCG           TATCCGGCTTTTGGG  70 46
 JH290_12330 2785875 .. 2785889 -  -3.5  -2.62983   TTTACCCGCACACGA              CG-CGC AGCG GCGGCG               GTGCCATCGGAACTC  39 66
 JH290_12325 NONE
 JH290_12320 2785048 .. 2785063 -  -8.2  -3.35278   GCAACGACACATCAA              GCGCGC GAAG GCACGC               CGCCAGGCAGCGGCT  60 6
 JH290_12310 2779695 .. 2779714 -  -5.6  -3.05384   CGCTTGTGGATCGAA            GACGACGG CACT CCGCCACC             AGCGGCACCGATTGC  49 107
 JH290_12300 NONE
 JH290_12295 2776358 .. 2776390 -  -7.8  -3.63968   CTTCAAACGGCTAAA     GCTGCAATTCGGCAGC GAC GCTGCCGA--CGCAAC     ACTCGTGCAGGCCGC  63 393
 JH290_12285 2775095 .. 2775118 - -13.8  -3.55761   CACCGATGGTGGAAA          GCAGCGCACC TCGC GGCGCGCCGC           TCACAACTTGTCGCA  81 60
 JH290_12275 2773388 .. 2773413 - -16.9  -2.70936   CGAGTAATCAGACCA         CCGGCCGCATC CCCC GATGCGGCCAG          CCACGCAGGCAGCCC  84 513
 JH290_12260 2772570 .. 2772589 -  -2.7  -3.06183   CTCAGGCTCATGCAA            GCCGGGC CTATTT GCCCAGG             TGCTGGCGCACCTTG  41 13
        ligD 2769731 .. 2769774 -  -6.6  -3.65522   CACCGATGGCAACAA GGCCACGCTCAAGCGCCTGCA GGA TGCAGTGGCGC-AGCGCAGCC GCGAGCTCGAACTGC  59 267
 JH290_12245 2766776 .. 2766824 -  -6.6  -4.07568   GGCGGTCCTTGAAAA CGCTGC-GGCTTGGACCG-GCGCA GGC CGCGCCCGGTTCCAGCATGCAGTG GCGCCGTTTTCCGTG  67 64
 JH290_12240 2765204 .. 2765230 - -11.5  -3.14132   CCCCCCCTGCAGCAA         CGCCTGCGCGC TGCAC ACCCGCAGGCG         GCAATGCAGCGGCGC  66 305
 JH290_12225 NONE
        tsaE NONE
 JH290_12215 2759097 .. 2759127 -  -6.7  -4.68506   AATCAAGGGGAAAAA      CGTC-GGCACGGCC ATCC GGCGGCGCCAGGCG       CCGTCATCGAGGAAT  81 66
        mutL NONE
 JH290_12205 NONE
 JH290_12200 2754765 .. 2754810 - -10.4  -4.65895   TCCGCGATGCAAAAA GCGGCGAAGACCT-CAGCCGC GCCGT GCTGCTGCAGATCATCGCCGA CCAGGAACAGGACGG  93 457
        htpX 2751725 .. 2751739 -  -9.2   -5.4505   CGCTGTAACAAAAAA               CCCGCA TGA CGCGGG               TTTTTTGTTGAGAAG 100 53
 JH290_12155 2746667 .. 2746690 - -17.4  -5.60689   GCAGACAATAAAAAA          CGCCGGACGC TTGC GCGCCCGGCG           TTTTTGGCAACCTTA 100 55
 JH290_12150 2745502 .. 2745542 - -13.2  -3.26471   TCACCTGCACAGCAA  GCCGCGTCGCAGCCTGTG GTTCA CACAGACGGCGACGAGCC  GCCGATGTTGCTGCT  73 304
 JH290_12140 NONE
 JH290_12135 2742095 .. 2742106 -  -7.2  -3.53012   TGGCGCCGCGCGAAA                GCGC TCGT GCGC                 AGGCGCTGGAGGCCG  58 434
 JH290_12125 2738669 .. 2738685 -  -5.8  -3.85698   GCCTGCGCCGACAAA              CGCACC CTGCT GATGCG              CCTGGCAATCCAGCT  60 348
 JH290_12110 2737118 .. 2737152 - -19.5  -3.75933   ACAGACCGCAGCAAA    CG-AAGAAGGCCGGGA TCGC TCCCGGCCTTCTTGCG     TTACAGCGTCAGCGC 100 46
 JH290_12100 2734842 .. 2734866 -  -4.9  -3.56643   CGTAGACCGCGCAAA          CCAGCTACTCC CCT AGAGTCGCCGA          CACCTTAGCCGAATC  55 60
 JH290_12095 NONE
 JH290_12090 2731792 .. 2731817 -  -3.1  -3.14564   GGACGCTGTCATCAA         GCCGGTTGAGG CACT CGTCAGCCCGC          CGCGATCAGCTTGAC  44 17
         efp NONE
 JH290_12075 NONE
 JH290_12070 NONE
        ubiG 2726616 .. 2726637 -  -3.7  -3.19602   CGGTCGACATCAAGA           CCGCAAC CAACCGCC GTTGCGA            TTCCCGAATCCCGAT  47 58
 JH290_12060 NONE
 JH290_12055 2724874 .. 2724884 -  -2.4  -3.28924   CATGTCGCTGGACAA                 CGTG GTG CTCG                 ACGGCGGGCCGGTCG  44 315
 JH290_12040 2720383 .. 2720418 - -18.5  -2.74012   CCAGCATTGCAAGGA    CGTCGTCGCT-CATCG GTGAG CGATGCAGCGACGACG    GCCGCCACGCACACA  86 218
 JH290_12030 2719453 .. 2719475 -  -5.5  -3.17075   TTCTGGCGAAGTGAA          GCGCACGTGC TCAC GC-CGTGGGC           GCGTGTTGCAACGCG  51 13
 JH290_12025 2719005 .. 2719052 - -15.5  -4.15044   TGCTGCCTGAATAAA CGAAGAGCGCATGGCGCTGCC TGAATC GGCGGCGCCATGCGCTCGTTT CCAAATCACCAAGCT 100 52
        dksA 2710948 .. 2710966 - -13.1  -4.46926   CAGCCCACGACAAAA             GCCCCGC ACTAG GCGGGGC             TTGGTCGCAACGGTA 100 62
 JH290_11985 2710024 .. 2710041 -  -6.9   -2.9914   TAGGCGGCACATACA             CGGCCGC CTGG ACAGCCG              CCGCGATCACAGCGT  51 230
 JH290_11965 2705352 .. 2705368 - -13.7  -5.37593   CCCGAAACGAAAAAA              CCCAGCC GCG GGCTGGG              TCTTCGAAACAGGCA 100 207
 JH290_11960 NONE
 JH290_11955 NONE
 JH290_11950 2702337 .. 2702350 -  -5.9  -3.59627   ATGAAAGTGTGCAAA               GCACG GAGG CGCGC                AAACGACTGGTAAAT  57 205
 JH290_11945 2701160 .. 2701170 -  -6.8  -3.14344   GATCGTTGGGAGGAA                 TGGC CGC GCCA                 GGCGCGGAACGCAGG  53 42
 JH290_11940 NONE
 JH290_11935 NONE
 JH290_11930 2698190 .. 2698213 -  -5.2  -3.17194   AGTCGTCCAATTGAA          TCCCCGCAGA TGGA TGTGCGGGCA           TGTGCGAGGGACGCG  48 43
 JH290_11925 NONE
 JH290_11920 NONE
 JH290_11915 NONE
        proB 2694922 .. 2694934 -  -6.3  -3.17797   GGGACACAGAGGCAA                CGTTT GGG AAACG                CAGTACAGATGTTTT  53 74
 JH290_11905 2693080 .. 2693093 -  -6.7  -4.20516   GGGCGACTGAAGAAA               TCGCA CGGA TGCGA                CAGCAGGTGGATGAC  72 510
 JH290_11895 2692429 .. 2692441 -  -4.7  -4.09864   AGGCAGGCGGCAAAA                CGGCG CAT CGACG                ACTCCGGAAGTGCGG  63 86
 JH290_11890 2690488 .. 2690522 -  -5.6  -3.02144   GCAGTGGCTGGAAGA    CG-TATGGGCGCCGC CGGCAC GCAGCGCCCGTGGCG     TCAACGCACCGGCAG  49 26
        cydD NONE
        cydC 2682378 .. 2682392 -  -3.4  -3.87815   TGGTATCGCCATAAA               TGCAGC AAG GCCGCG               TTCCAGCTGACGTTC  56 177
 JH290_11795 2672208 .. 2672218 -  -2.4  -4.19238   TGGGGAACGGGAAAA                 GCGG CAC CAGC                 AGGCGCGAGGTCAAC  59 119
 JH290_11790 2671234 .. 2671288 -  -3.5  -3.78597   ACGCATTAACGGAAA CGCAGG-TG-TTCCACGACGAGCCGCT TTC AGCTGCTCCAGGCGGAAGCAGCCCGCA GATAAATCAGGCGTC  54 101
 JH290_11780 2669300 .. 2669347 - -17.2  -2.88544   CGCCATCGCTACAGA CCTCTAGAGGCTTTGTTACCTA TCTC TAGGTAACAAAGCCTCTCGCGT ACAGATGCGCTTGTT  87 77
 JH290_11760 NONE
 JH290_11755 2663885 .. 2663904 -  -7.8  -3.46602   TCTTGGAGATCACAA            GCAAGCTG CAAC CAGCATGC             TCCTGCACCGCAATC  60 85
 JH290_11750 2662419 .. 2662439 -  -9.7  -3.71848   GTCTTGCAGGAACAA            CCGCTGC GGGGGTG GCAGCGG            GAGCGGACAGGACGT  71 53
 JH290_11745 NONE
 JH290_11740 NONE
 JH290_11735 NONE
 JH290_11730 NONE
 JH290_11725 NONE
 JH290_11720 2651363 .. 2651381 -  -2.3  -3.19889   CATCAACACACCGAA            CCGGCCGC GATA GCG-CCGC             GACGTTGTTGCCCGC  43 60
 JH290_11715 2650257 .. 2650274 -  -2.5  -3.14132   GTTCCTGCTGACCAA             CCTGGGC AGCG GCGCGGG              CGTGTGGCTGGCCGG  42 223
 JH290_11680 2644779 .. 2644801 - -10.5  -3.76048   TGTGAAGTAATAGAA           CCGCCACGC GGGAT GCGCGACGG           AGCCTTTGAAACGCC  74 77
        rpsA 2642927 .. 2642961 - -14.3  -2.91264   TTTTCGACTGACACA    TCGGAATCGGCCCGGG CAAG CCCGGGCCGAT-CCAT     CACGCTCTCAGAAAG  77 53
 JH290_11670 2642514 .. 2642545 -  -6.4  -3.79043   CACCAGCAAGCGAAA      CACCTTCATGGCGG AACT CCGTCGGGAAGGCG       CCTAGCTTAACCGAG  62 66
 JH290_11665 2642231 .. 2642241 -  -2.4  -3.17763   CTTACAGTCCATCAA                 GCGG GCG CGGC                 TCGACGGCGACAGGA  43 1
        lapB NONE
 JH290_11655 2640054 .. 2640072 -  -2.4  -2.90341   AATCATAAAAATCCA             TTACTCAA GAA TTGCGCAA             TCCATGGCGCAGAAG  40 11
 JH290_11650 NONE
        galU 2637192 .. 2637223 - -16.6  -4.18018   CGCGCGGACCCAAAA      CGACGAACGGCGCC GAAT GGCGCCGTTCATTG       CAACACTGCTAGCCG 100 46
        folD 2633760 .. 2633788 - -14.6  -3.02043   AAGCGGCCGCGAAGA        CACTGCGGCAGC TGAGT GCCGCCGCAATG        CTGCGTTACACGAAC  78 44
        guaB 2632164 .. 2632179 -    -6   -3.9344   AATCGCAACAGCAAA              CGCGGC GCCA GCCGCT               GTCGGACGAGGAAGC  62 92
        guaA 2630504 .. 2630519 - -11.8  -5.64274   CCAGGCATAAAAAAA              GGCGCC TTGC GGCGCC               CTTTTCGTTCGATCT 100 57
 JH290_11595 NONE
 JH290_11590 NONE
 JH290_11585 2622480 .. 2622495 -    -6  -3.03441   CAGCACCCTGCAACA              GCTGGC GCCG GCCGGC               ATCGTGGGAATCAGT  49 49
 JH290_11580 2620451 .. 2620469 -  -3.7  -4.78149   TCCAGAACGGAAAAA             CGCGCGG TCCGG CCAGGCG             CCCGCGACGGACACT  75 120
 JH290_11575 2618697 .. 2618729 - -16.3   -4.4195   ACACATCCGACAAAA      CACAACGGGCGCCCA TAC CAGGCGCCCGTTGCA      CGTTTTGCGATCTGC 100 92
        mntR NONE
        tadA 2614330 .. 2614351 -  -4.3  -3.53012   GGCCGGGTGCTGAAA           GGGCGCG CATCATAC CGCGGCC            ATGCCGATCAGGGCA  51 33
         orn 2613574 .. 2613608 - -28.8   -3.6682   GTGCAGTGAGTCAAA     CGCAAAGGGCCGCATC GAT GATGCGGCCCTTTGCG     TTACTACAGTTTTGC 100 120
 JH290_11535 2609130 .. 2609144 -  -5.6  -3.01712   CCGCCCGCTTCAATA               CGTCAC CGG GTGCCG               ACCGGCCATACCACG  49 121
 JH290_11530 2608504 .. 2608520 - -13.7  -3.10894   ATCAGTATGACCGAA              GCTGCGC GCC GCGCAGC              GATCAGCTGATGGCG  75 28
 JH290_11525 2607611 .. 2607624 -  -9.5  -3.03124   CGGCATTGCCGAAGA               CGCGG TGAT CCGCG                AAGTGATGCTCAAGC  57 377
 JH290_11515 NONE
        phaE NONE
 JH290_11505 NONE
 JH290_11500 NONE
 JH290_11495 2603044 .. 2603057 -  -3.7  -3.86346   GCACGTTTGCAGAAA               CCGCC GATG GGCTG                CCGTTCTTCGGCACG  58 151
 JH290_11485 2601525 .. 2601536 -  -2.2  -4.59773   CTTCACTGTCAAAAA                TGCA TTTT CGCA                 GTGCCGGGGCGCCGC  68 84
 JH290_11480 2599096 .. 2599120 - -15.7  -3.61715   CATCCGCCTGAACAA          CGCATCCTGGC GCG GCCAGGGTGCG          TTGTGATCAGCTGCG  86 32
 JH290_11465 2594916 .. 2594931 -  -7.5  -5.77988   ACAGACACAAAAAAA              CCCGC CAAGTT GCGGG               TTTTGTTGAAGTTTC 100 73
 JH290_11460 NONE
 JH290_11455 NONE
 JH290_11450 NONE
 JH290_11445 2591897 .. 2591913 -  -2.1  -3.35679   GTGCCGCATCCACAA              CGGCCCA GTG TGGCTCG              TCGGTCAGGCGTGCC  45 179
 JH290_11440 2591251 .. 2591309 - -11.7  -3.68619   CCGAAGCGAGTGAAA GCTGCCCTGTAGGACCGACCACCGGGCCA CAC TGCCCCGATAGTCGTACCTACTG-GC-GC GCTCCTTGACCCGAT  78 85
 JH290_11435 NONE
 JH290_11430 2589318 .. 2589335 - -11.3  -3.14132   GTCTCCCCCTACCAA             GAGCCTG CCAG CAGGCTC              CGCGAACCCATGTTA  67 38
 JH290_11425 2587883 .. 2587899 -  -9.3   -3.8917   CGCCAACGACAAGAA              GCTCCGC ACT GCGGGGC              TTTTTTGTTGGGCGT  74 284
 JH290_11390 NONE
 JH290_11385 NONE
 JH290_11380 2577587 .. 2577620 - -15.9  -2.55722   AGATCAGCTAACTCA     CGGCAACGACGCCGC CGAA GCGGCAGCGTGGCCG      GGGATTGGCGGAGAG  77 283
        ugpC 2568420 .. 2568431 -  -3.6  -4.59773   GTTCAGCGTCAAAAA                GGGC TGTT ACCC                 GGGCCAGGAAATCGT  73 438
 JH290_11340 2567603 .. 2567624 -  -5.9  -4.07568   CCGCTGTGGCTAAAA           GCTGC-TCAA AAA TCGATGCAGC           GTCCATTTTTTTCCC  65 9
        sdhC NONE
        sdhD NONE
 JH290_11325 2564960 .. 2564974 -  -3.5  -2.80816   TCGGCACTCAGTAGA              CGCGCG GCTT CG-GCG               GAACCACATCCACTT  40 3
 JH290_11320 NONE
 JH290_11315 2563863 .. 2563901 -   -21  -4.08216   GTAGCGGGCCGAAAA   CGACAGCGGCACCAGACC TGA GGGCCGGTGCCGCTGTGG   TGACGTCCTGCCTGA 100 61
 JH290_11310 NONE
 JH290_11305 2563171 .. 2563195 -    -5  -2.90227   GTTCAACCATGAAAG         GGACGCTA-TG GTGC CACTAGCGACC          GCCGGGACGAAATGG  46 6
 JH290_11300 2561921 .. 2561935 -  -4.9  -3.39482   GAACATTACTCATAA               CGCAG CGCCT CCGCG               GGCTGGGTGCGCGAA  50 1
        lolD 2560898 .. 2560917 -  -4.2  -2.56914   TAGTCCAGCAACGTA            GGCGCATC GTTC GATGCACT             CAACTTCGAGCTCAA  41 286
 JH290_11285 NONE
 JH290_11280 NONE
 JH290_11275 NONE
        msbA NONE
 JH290_11265 2552676 .. 2552690 -  -2.8  -2.71712   TCGGTGGTTGGAAAG               GATGGA GGC TGCATC               GACCGGCGGTTATCT  40 69
        kdsB NONE
 JH290_11255 NONE
 JH290_11250 NONE
        uvrC NONE
        pgsA NONE
 JH290_11235 2547311 .. 2547334 - -17.4  -3.90744   CCTGCCCTGAAACAA          CGCGACCCCG CGCA CGGGGCCGCG           TTTACATCTTGGAGC 100 35
 JH290_11230 2547190 .. 2547202 -  -4.1  -4.19817   TGGAGGCAGGGAAAA                CACAC ACG ATGTG                GAGGCCTGGGCCGGA  63 23
 JH290_11225 2547014 .. 2547037 -   -11  -5.67283   AACCCAAATAAAAAA          GCCATGGACC GTAA AGTCCACGGC           TTGAATTTGGAGCGG 100 33
 JH290_11210 2543441 .. 2543454 -  -4.5  -4.11216   GGCGGATCTGCAAAA               GCCGCG CAA CG-GGC               GCAGTTTCAGCGAGC  62 383
 JH290_11195 NONE
 JH290_11190 NONE
 JH290_11185 2539537 .. 2539552 - -11.8  -4.96848   GTGGCGACAGAAAAA              GCGGCC TTCG GGCCGC               TTTTTTTTGTGTCAT 100 521
 JH290_11175 2534303 .. 2534321 - -13.2  -2.95298   GGGACCCACGACAGA             GGTAGCTG AGG CAGCTACC             GGGCTAGACCTGCTA  70 224
 JH290_11155 2531725 .. 2531744 -  -4.8  -2.70932   GGTGGTGCGGAATCA            GGCCGCGC TGTC GCGCGGAA             TGTAAGGCGCGTCGC  44 3
 JH290_11150 2529852 .. 2529869 -    -2  -3.10409   GATCAACTTATCTAA             CT-CTGG AGCTG CCAGCAG             TTCTGCAGCACCGGC  41 71
 JH290_11145 2529057 .. 2529092 -  -2.6  -3.87354   CAAAGCCAGACCAAA    CGAATTCGCG-ATCG TGCCGAC CGATACGCCATTTCG    CATAATGTATATTAT  54 70
 JH290_11140 2528172 .. 2528184 -  -9.1  -3.39844   CGGAGACCTGAAACA                TGGGC GCG GCCCA                CCGCCAGTTCATTAA  65 96
 JH290_11120 2516541 .. 2516576 -  -4.7  -5.20534   ACTAACGAAGAAAAA   CGCA-TCTG-CCGTGCC GAAG GGCAGGGGCAGGGTGCG    GCCAACGAGCGCGTG  86 500
 JH290_11115 2516025 .. 2516056 - -12.9  -3.61398   TGCGCGTTTGAAGAA      CGCGGCGGCCGCG GCCAAA CGCAGACGCCACG       CTGTGCATCAGATCG  77 58
 JH290_11110 2514831 .. 2514865 -  -7.9  -2.56715   AGTCGCATCAATGGA    TGACTGTGCCCACGCA TCGG TGCAGGGACACAG-CA     GTAACAGCAACGTCA  51 60
 JH290_11090 NONE
 JH290_11080 2509452 .. 2509499 -  -3.3  -3.54424   TTCCAGCTGGGTAAA CACCTGCCAATGCGCACCAAC GCGCAG GTCTGCATGCACTTGCAGGCG ATGCAACAGATAGCT  51 259
 JH290_11070 2507299 .. 2507311 -  -3.3  -3.71527   GCGCAAGGATTTAAA                GACGC GGC GCGTT                GATCGCAAACCGCAT  54 96
 JH290_11060 2504519 .. 2504533 -  -5.6   -2.9914   CACCGCTGAGACAGA               CGGTGG CAA CCAGCG               CATGTGGCCTCAGTG  49 35
 JH290_11050 2501518 .. 2501531 -  -2.3  -3.12351   CGCGCGCACAGGCAA               TACGC GTCA GCGTG                AGAGCCCCACCGTGG  43 18
 JH290_11045 2501053 .. 2501068 - -11.8  -5.37593   CGCCAAACGAAAAAA              CCCCGC CGTA GCGGGG               CTTTCATTGGCAGTG 100 74
 JH290_11040 2499783 .. 2499797 -  -5.6  -3.35679   GCCTGCGACTTACAA               GCCCAG CGC CTTGGC               CTTGGCGGCGTCGTA  52 5
 JH290_11035 NONE
 JH290_11030 2497944 .. 2497974 -  -7.5   -4.2828   GCGCAGCTATCAAAA      CGACTGCGCAGCCGC CAG GCGG--GCGCGGCCG      GTGCTCGGAATCGGC  76 224
 JH290_11015 2495611 .. 2495639 -  -8.8  -3.54475   GGTGGTAGCAGAGAA       CGCCTGGTCGCGCG CAA CGC-CG-CCTGGCG       CACCGGTGGCCGGCG  62 447
 JH290_10990 2492536 .. 2492571 -    -6  -3.03159   CCAACTGCGGTAACA    CAGCC-ACGTACGGGCG CTG CGTCCGCATGCAGGCCG    TTGTCAGCTGGGTGT  49 29
 JH290_10985 2490091 .. 2490116 -  -7.5  -3.28122   GACTACGCAAAGACA         CGCATCGCCCCG GCC CATGGCGA-GCG         GATGTTCTGCAGCGT  56 191
 JH290_10975 2488875 .. 2488931 - -10.8  -3.28712   CGCCTCGTTCCACAA TCCCACCACGCTGCAGCTGGCAGGCAAC AGC GATGCC-GCT-GCCGCAGCGCTGTGGCA GGACCCGACCGGCAT  66 261
 JH290_10955 2484114 .. 2484137 -  -3.7  -2.52464   GCCGCCCGGAAGTCA          CCGTGCCGA TCGGCG TCGGCGTGG           GCGATCACGTTGCAC  41 77
 JH290_10950 2482808 .. 2482858 -  -7.5  -3.17392   CAGTGGGTAAGGGAA CCACGCACGACCGGC-GCGC-GCG ACGCTG CGCAGCCCTGCCGG-CGCGCCCGG TCGGCCACCGCAACG  56 431
 JH290_10940 2480706 .. 2480728 -   -12   -2.8664   GATGCAAGCACGACA           GGCGCTGC CATCACC GCAGCGCC           TGCAACACGCCACCG  67 46
 JH290_10925 2475063 .. 2475083 - -13.9  -4.00532   TGTTGAAACAGCAAA            GGCCCAGGC AAT GCCGGGGCC            TTTTGTTTGTCACCA  90 56
 JH290_10915 2460451 .. 2460481 -    -8  -2.77899   GGGCGTGATCAACTA       CCCGGTGCGCCGGC TCG GCTTGTGCGCCGGG       GTCACCGAAGCGCGC  51 227
 JH290_10875 NONE
        rfbF NONE
 JH290_10865 2451445 .. 2451483 -  -4.4    -3.494   GAAGGCGCCAGACAA  CGGCGTG-GGGCGGAAG ATCATG CCGCCGCCCTCAAGTCG   GCCGCGAGTGCGCCG  51 4
        rfbC NONE
 JH290_10855 2449532 .. 2449554 -    -9  -2.64616   CGGGTACCGAGACCA           TGCGGGTGGC ACT GCCACGCGCT           CTGCGTGGCGGTGCT  56 60
 JH290_10850 2447996 .. 2448050 -  -5.5  -3.16564   CGTGCAGGTGATCAA CGGGGTCAGCGCGGCGTTC-GCGGCCG CGG CGG-CGCTGGAGGTCTCGCTGACCCAT CGCGCGCATTGCCAT  49 422
 JH290_10810 2437671 .. 2437685 -    -7   -3.1552   GCTGACGCAGCAACA               CCGCTG CTG CCGCGG               ACTCAGCCGCCGCTT  53 28
 JH290_10790 2434800 .. 2434811 -  -7.2  -4.17048   TGCGGGCGAAAAGAA                GCCG TCTG CGGC                 GAAGAAGGCAGTAAA  72 203
 JH290_10780 2432914 .. 2432945 -  -8.6  -3.51329   GATGTTCAAGCACAA      GCACGAAGGCTGCG TGCG CGCGGCGTTCGTCC       CGTAAGTTGCTCAGT  63 91
 JH290_10755 2428010 .. 2428031 - -15.9  -2.91264   TGCGTGATGGATACA           GATCGCCGC TCTT GCGGCGATC            TGTATTTGCAGCGAA  79 93
        moeB 2423507 .. 2423544 -  -6.9  -3.25823   CGCGGCCGACAGCAA   CGTATTGATCGTGCTGCC GGA GGCGGCGCG-CCACTACG   ACGCGGGCGAGGTGG  54 77
 JH290_10695 NONE
 JH290_10690 NONE
 JH290_10685 2411014 .. 2411031 - -12.7  -3.81951   GCTGAGACGATCAAA             GGCGTGC ATGA GCACGCC              TTCGGTCTTTACAGC  81 84
 JH290_10665 2404262 .. 2404276 -  -9.2  -3.68073   GATGTCAGCGAAGAA               GCCGCG CCA CGCGAC               GGCCTGCAATGGTTA  68 369
        trxB NONE
 JH290_10640 NONE
 JH290_10635 NONE
        infA 2395463 .. 2395480 - -12.7  -4.96848   GCTGCTAGAGAAAAA             GCCGCTC GAAA GAGCGGC              TTTTTTGTGTTGAAG 100 373
 JH290_10615 2391899 .. 2391944 -  -3.2  -2.57244   CCACCGACGAATCCA CGCCGCCCGA-CACCCCTACGA TGGT CCGC-GGCGTGCTCATGCGACG TGCCGTACCAGCGCC  39 16
        mnmA NONE
        hflD NONE
 JH290_10600 2388795 .. 2388813 - -11.7  -4.05446   GTGCGGAACGACAAA             TCCCCGG GAAGA CCGGGGA             ATGTCGGGATCAGGC  83 58
 JH290_10595 2388423 .. 2388456 -   -11  -4.21812   GGGCATTGAAAACAA    CCGGCGGGGCG--CCT GCCG AGGAACGCCCCGCCGT     CGTGTAACCGTCAGC  84 36
 JH290_10580 NONE
 JH290_10575 2380697 .. 2380712 -    -6  -4.48299   CCACACGCAAACAAA              CGGAGC ACGC GCACCG               CTTGTACCGATTCCC  74 54
 JH290_10550 2376537 .. 2376576 - -15.6  -2.73771   TCAGACGGGGGAAAT  CCCGTCAGGCCTGCACGC TTAG GCGGGCAGGGCTGCCGGA   TCGAGCAGGATCAGG  78 36
        flgB NONE
        flgC 2375307 .. 2375319 -  -9.1  -3.33815   ATGGTCCGTAAGGAA                GGGTC AGC GACCC                ATGGTCAAGGTGGCG  63 16
        flgD NONE
        flgE NONE
        flgF 2372045 .. 2372084 - -11.5  -3.62418   AGAAGCCAGGTCAAA CGCTGGGTCGGTCGAGGGCG CGG CGCCCTC-ACCG-CTC-GCG GGACACGCCGTAAAT  73 400
        flgG NONE
        flgH NONE
 JH290_10510 NONE
        flgJ 2367899 .. 2367912 -  -3.1  -3.18582   TACCTCAGCGACGAA               TGGTGC CTA GC-CCA               ACGGGCTCGGCGGTA  44 1
        flgK NONE
        flgL 2364581 .. 2364591 -  -2.4   -3.7732   TGCTGAGATGAATAA                 CGGC GAT GCTG                 TGGGAACCTTTAGCG  52 231
 JH290_10490 2363235 .. 2363252 - -12.7  -5.24129   CGCGCCCACAAAAAA             GCCCCTC CGAA GAGGGGC              TTTAGCGTTGCTGTG 100 51
        fliD 2361642 .. 2361665 -  -4.4  -3.28924   GAGCTCCTGCGACAA          CGCTCCTGCC AGAA GGCAAGGCCG           ATATCACGATAGGTA  48 89
        fliS NONE
 JH290_10475 2360871 .. 2360883 -  -3.3   -2.8547   AGCGTGGACATCAGA                TGCGT CCG ACGCG                TGCGTAGGCGCGGCT  42 8
 JH290_10470 2360244 .. 2360259 -  -3.3  -3.17325   ACGGCGGAGAAGAGA              CCTTT TTTTGT AAAGG               GCACCTTAGCCGACG  44 66
 JH290_10465 2359416 .. 2359426 -  -5.4  -3.05384   CGTGCGGCGATGGAA                 TGCA TCT TGCA                 GGACACAGCGACGGG  47 197
        rpoN NONE
 JH290_10455 2357566 .. 2357586 -  -3.9  -3.13403   CGCTGTCGATTAACA            GAATGCGGG ACT CACTCATTC            CTGGCTCCTTCCGTC  47 16
 JH290_10450 2355823 .. 2355866 -   -13  -3.13403   GCTGGGTGACGAAGA CCGGATCCCGGCCGGCCTGCG GGT CGCAGGCCGGCGGTGA-CAGC GTGGCTGGCCCTTCC  73 253
 JH290_10445 NONE
 JH290_10440 NONE
 JH290_10435 NONE
 JH290_10430 NONE
 JH290_10425 2348167 .. 2348189 - -16.2   -3.0814   ATTCAGACCTCAAGA           CCGGCAGGCG ATG CGCCGGCCGG           CCATGCAGATGCGGC  84 70
        fliE NONE
        fliF NONE
        fliG NONE
 JH290_10405 2344236 .. 2344249 -  -3.1  -3.61398   GGTGGCTCCCAACAA               GGCGCT CAC AG-GCC               TGCTCCGGATTTACG  51 17
        fliI NONE
        fliJ NONE
 JH290_10390 2341036 .. 2341061 - -17.6   -4.2828   GCGGACGCACCAAAA         CCCCCGCAGC CCTTGC GCTGCGGGGG          TATGGAGGGCACCGC 100 96
 JH290_10385 NONE
        fliM NONE
        fliN NONE
        fliO NONE
        fliP 2337546 .. 2337567 - -11.5  -4.56597   TGTCCCTTTGAAAAA           CGTCGCGCA TCCA TGCGCGCCG            CCCCTGCGGGGTTTG  95 273
 JH290_10360 NONE
        fliR 2335748 .. 2335763 -  -3.2  -2.50816   CGTCGACGGAGGAAG              GGCAGT GATC ACTGGC               GATTGCCGCCATCAA  39 92
 JH290_10350 NONE
 JH290_10345 2329635 .. 2329649 -  -3.4  -3.05384   TGCCCTGTGAGCTAA               CGACCC GCC GCGCCG               CTTCTTGAGTGGGTG  43 53
 JH290_10340 2327193 .. 2327209 -  -2.2  -3.76373   GCGGGAATAGGCAAA              GCCG GGTAGCAGA CGGC              TGGTAGGTTGCGCTG  52 315
        flhB NONE
        flhA 2323520 .. 2323530 -  -8.2  -3.14132   GGCGTTCCCGATGAA                 GCCC TAT GGGC                 GTTCCCGGTAAAGCC  58 330
        flhF NONE
 JH290_10320 NONE
 JH290_10315 NONE
        cheY NONE
 JH290_10305 NONE
 JH290_10300 2316669 .. 2316699 - -23.4  -3.90291   ATGCTGGTAATGAAA       CGACAACGGCCGCA GTA CGCGGCCGTTGTCG       TTAGATCAGGCAACC 100 139
 JH290_10225 NONE
        motD NONE
 JH290_10215 NONE
 JH290_10210 NONE
 JH290_10205 NONE
 JH290_10200 NONE
 JH290_10195 2292763 .. 2292784 - -13.7  -4.87803   CACGCGCAAACAAAA           GCCCCGACA TCGC TGCCGGGGC            TTGAGCGTATTGGCC 100 228
 JH290_10190 2290193 .. 2290213 - -14.7  -4.39166   CGCCACATAGCAAAA            CGCCCCGAC AGG ATCGGGGCG            TTTTGAGCTGCGCTG 100 85
 JH290_10185 2289232 .. 2289253 -  -6.5  -2.71731   CCCACTTGGCAAGCA           GTCGC-TGCC AGT GGCGCGCGAC           ATCTCTGACCTCCGC  49 274
 JH290_10180 2286561 .. 2286579 - -17.4  -4.37092   ATGGTGGGGAGAAAA             GCCCGCCG TGC CGGCGGGC             GTGACACGTCACTCA 100 38
 JH290_10175 NONE
 JH290_10170 2281191 .. 2281215 - -16.5  -5.09259   CAGTGCAAAAGAAAA          GCCGCGTTTCC ATC AGAAACGCGGC          TTGGTCTTGTCAGCA 100 63
 JH290_10165 NONE
 JH290_10160 2275940 .. 2275970 - -17.6  -3.40073   ATCGGGAGGAAGCAA       CTGCCAACGCTCGC TTT GCAAGCGCCGGCAG       CGTGGCTCAGGCCGC  93 32
 JH290_10155 NONE
 JH290_10150 2272757 .. 2272782 - -18.3  -5.60993   CTTGCTACAAAAAAA         GGCCGCCTCCC TCGC GGGAAGCGGCC          TGGCCGGTCCGCTGG 100 82
 JH290_10145 2269691 .. 2269715 -  -9.4  -2.90615   AGTCCCGGTAAAGCA         CTTACGCGGCA TCCA TGC-GCGTAAG          GTCCTGCAACAGTAA  58 146
 JH290_10140 2268108 .. 2268126 -  -6.6  -3.02511   CTTACCCTTGCAACA             TCGGCGCC TGC GGCGGCAA             CTTTAGGTGCAGGGG  51 60
 JH290_10135 2267445 .. 2267480 -  -4.4  -3.28712   TTGGGCTCGCCACAA    TGGCGAAGCGGCCGCC GGTG GGCGTGGGCAGCGCCA     GGATCGCCTGGGCCG  48 109
 JH290_10130 2266828 .. 2266855 -   -20  -2.62933   TAACCGCTTACAGCA        CAACGCCACGTC CTGG GACGTGGCGTTG         TGCTCTGCAATTACT  90 36
 JH290_10125 2264371 .. 2264396 - -20.5  -2.64155   CGTGCCCCAAATGCA         CAACGCCCCGG GAGA CCGGGGCGTTG          TCGGGTCAATCTACA  91 43
 JH290_10120 NONE
        cheD NONE
 JH290_10110 NONE
 JH290_10105 2259345 .. 2259359 -    -5  -2.78738   TCAAAAGTTTAACGA               TTGCAC TGC ATGCAA               CCGTCGAGGCTGAAG  44 64
        acnA 2251867 .. 2251896 - -23.7  -4.56597   TCCGTTGGCCAAAAA       CGACACTCCCGCC GGGC GGCGGGAGTGTCG        GGAACATCACTTCAG 100 46
 JH290_10070 2249428 .. 2249468 - -16.2  -4.08767   TCTATGCGTGCAAAA GCA-GACGCCCGCAAGGCC TTGC GGCGTTGCGGGCGTCATGA  CGACTGAACGTCTTC 100 63
 JH290_10065 2248381 .. 2248430 -  -3.3  -3.57561   GTTGAAGGCGGGAAA GGATGCACTCGACGCACGCG-TGC AGG GCGTCAAGGACGGCGAGTGCTCCC CCCGTAGCAACGAAT  51 55
 JH290_10030 NONE
 JH290_10025 2239068 .. 2239110 - -11.3  -3.21912   GCGCCAAGGGAGCAA TG-CCGTCCCTGTGTGACCA GTTG CGGTCCCACGGGGACGAACA GGGGACGGCAAGCGG  67 99
 JH290_10020 2237668 .. 2237689 -  -5.1  -3.46509   CTTCAACAACAGGAA           CGGAAGCGCA TCT TGCG-TGCCG           CCGGCAGTTGCCGTC  53 71
 JH290_10015 2236343 .. 2236372 -  -2.8  -2.70932   GCGCCTGCTCAAGGA       GCGCCACCTCAAG CTGAC CTTGCGCTG-CGC       CGGGCGCGCCGAGCC  40 279
 JH290_09940 NONE
 JH290_09935 2219437 .. 2219455 -  -5.8  -2.71011   ACGCGGGTGGAATGA             TCAGGCGG CCG CCGCCAGT             GCCTTGCCGACCTTG  46 7
 JH290_09930 2218498 .. 2218508 -  -2.4   -3.4398   GGGGAATTGAAAAAG                 CCGG GGC CGGG                 GGGCTGGGAGTGGGA  47 80
        yeiP NONE
 JH290_09920 2217440 .. 2217473 -  -5.9  -3.87815   GTCCAGCGTGAGAAA     GCGGCCTGGGAGCGTC GAG AACACAGCCAG-CCGC     TACGTCTGCATGGCA  62 45
        serA 2212154 .. 2212186 - -10.6  -4.63527   GTAGTACCGGAAAAA      CGCTGCGGATATCG GTCGA CGATATCCGCACCC      TCAATACAGGATTCG  95 26
 JH290_09895 2210530 .. 2210543 -  -2.3  -3.23393   GCTGAGCTGACAAGA               GGTTC CGAG GCACC                GCCAGTGTATCGCTG  43 69
 JH290_09885 2208289 .. 2208308 -   -15  -3.51032   ATCGTTGAACGAGAA            GACCGGCG CGAA CGCCGGTC             TTGAGAGGGTCAGGC  83 35
 JH290_09880 2206524 .. 2206534 -  -6.8  -5.19212   ACCAGCATCAAAAAA                 CGTG CAT CACG                 TAGGGCGCTTTGCTA  88 305
 JH290_09875 NONE
 JH290_09870 NONE
        mtnC 2204162 .. 2204190 -  -8.1  -4.90778   CCCACGCAAACAAAA        CCGCGCCATCA ACCGAAG CGATGGCGCGT        GGTCAGTTACAGCAC  90 32
 JH290_09860 2202629 .. 2202658 -  -4.2  -3.89346   GGCGCACCCCACAAA       CGCGAACGCCTCC ACGAG GGAGGCG-TCTTG       GATCCGGGCTGGCAG  58 158
 JH290_09800 2190319 .. 2190330 -  -7.2  -3.06796   CCGTATGTCAGCGAA                GCGG TGAT CCGC                 AGCCAGGGCCGGCTG  51 306
 JH290_09785 2187710 .. 2187741 - -15.9  -2.71712   TGCCTGGTTCGAAAC     CCGCGCGGCTGCCGC TGCG GCGGC-GCCG-GCGG      TGCAAGCCGCATTCG  75 180
 JH290_09765 2181586 .. 2181596 -  -4.6  -3.25823   CGGCCGCGACATCAA                 CAGC GCC GCCG                 GTGATAACGGGGTCG  50 63
 JH290_09710 2166175 .. 2166185 -  -5.4  -3.05384   CCTCGGGGTAGGGAA                 TTGG ACT CCAA                 ACTGAGGCGCTACTC  47 322
 JH290_09705 2164893 .. 2164906 -  -2.3  -3.78329   CTCGATTAACGGAAA               TCCTC TGGG GCGGA                CACTTGGTGTGCTAC  52 167
 JH290_09685 2157275 .. 2157294 -  -4.2  -3.64822   ACTTGCGGAGGTAAA            CGGCGCGTC TGT GAC-CGGCG            GCGCGCTGGCAGGGG  53 191
 JH290_09665 2138830 .. 2138848 - -17.4  -3.34043   GCCAGCACCGGACAA             CGCCCCGG AAC CCGGGGCG             CTGCGATCACAATGC  91 43
 JH290_09660 NONE
 JH290_09655 NONE
 JH290_09650 NONE
        murB NONE
 JH290_09640 NONE
 JH290_09635 2133535 .. 2133545 -  -3.2  -3.17075   GTTTGGGCAATGGAA                 TGCC GAT AGCA                 CCTATCAGACTTCAC  44 94
 JH290_09630 2132008 .. 2132030 -  -5.5  -3.97834   TAAGGCGATCACAAA          CCGAC-TGCG CAGC CGCAAGGCGG           GCGACGCCGGTGCTC  65 132
 JH290_09615 NONE
 JH290_09610 2128076 .. 2128121 - -19.7  -4.10453   GAAAGCCGGCCAAAA CCGCAGCAGGCACACCAGGCGC TCA GCGCCCGG-GTTCGCGCTGCGG TCCCGGGCTTGGGCG 100 2
 JH290_09600 2124447 .. 2124484 - -19.9  -3.71487   CATCACACGCAATAA   GTAACGCGGCGCGGAGA GCAC TCTCTGCGCCGCGTTGC    GTTTGGGCGCCGTCA 100 42
 JH290_09585 2117125 .. 2117141 -  -3.6   -3.5393   ACTATGCCTTCGAAA              CCACGC TGGGC GCGCAG              ACAATCGCGCGTCTA  51 475
 JH290_09545 2111159 .. 2111176 - -14.1   -4.3208   GCCCACAACGCAAAA             GCCCCGC AATC GCGGGGC              CTTGGCGTGTCTGCA 100 52
 JH290_09530 2108136 .. 2108166 -  -5.5  -4.36914   GTTTGTCGCAGAAAA      TCGCTG--CGGCATA CCG TCTGCCGATCAGCGA      GGAACAGTCAACCGC  71 100
 JH290_09525 2107484 .. 2107519 - -11.8  -3.10164   GGATGCACGATTGAA    GGCGCATGGCGGCATGC TTC GC-CGCCGCCATGCGTT    GGTTGTGACATTCCT  68 67
 JH290_09455 NONE
        dgoD NONE
 JH290_09445 NONE
 JH290_09440 NONE
 JH290_09435 2077784 .. 2077802 - -17.4  -4.39568   ATGCAGACAGCAAAA             CGGGCGCC CAG GGCGCCCG             TTTTGTATTTGCGGC 100 56
 JH290_09420 NONE
 JH290_09415 NONE
 JH290_09410 2074700 .. 2074711 -  -2.2  -3.56092   GGAGGACGCGGGAAA                CGAG GGAA CTCA                 CTGTTTGGCGTGCGC  49 23
 JH290_09405 NONE
 JH290_09400 NONE
        thiD NONE
 JH290_09390 2070947 .. 2070969 -  -3.2  -2.55015   ACTCTATCCAACTGA           GCTACGGGCG CCT CGTCAGGAGC           GGAATTATGCGGATG  39 82
 JH290_09385 2070844 .. 2070863 -    -5  -4.88407   TTATGTAACTAAAAA            GACAGC GGTTGAAG GCTGTC             TTATGTTGTTCTGAA  80 43
 JH290_09380 2070677 .. 2070694 - -11.3  -6.07627   ATGGGCAAAAAAAAA             CGACCAG CAAG CTGGTCG              TTTTTCCAAGAATGG 100 38
 JH290_09365 2067734 .. 2067749 - -11.8  -5.19328   ATGCCACAACAAAAA              CCCGCC AGTC GGCGGG               TTTTTGCATTACTGG 100 97
 JH290_09315 2053337 .. 2053352 -  -7.6  -3.05384   GCGCGTTGCATGCAA              GGTGAT AGGC ATCACC               GCATCCCGTCATATC  54 55
        yhbY NONE
 JH290_09270 2044625 .. 2044640 -    -4  -3.54743   CATCATCAAGCACAA              CGATCAG TGG CTG-TCG              GCTTACGGCCACAAC  51 361
 JH290_09245 NONE
 JH290_09240 2040776 .. 2040799 -  -7.3  -2.70932   GGCGCCGGCGAATTA          CGCTGCAGC GCTGAT GCCGCGGCG           ATTGAACAGGCGGCA  48 394
        parE 2030990 .. 2031025 - -19.9  -3.06696   CTCCGCCCGAAGAGA    TGCCTTCTCGCCGCT GCAACG AGCAGCGAGAAGGCA     GTTCCGAATCGCCGC  93 45
 JH290_09180 2028309 .. 2028347 - -13.9  -2.57721   CAAGGCATTAAGGCA  TTGCGCACTGCCGGCGAC TGCT GCCGCCGGCAGGAC-CAA   CCTCAGCGTGTCTCG  71 28
 JH290_09160 NONE
 JH290_09155 2022815 .. 2022835 -  -2.4  -4.03811   GAGAGCATCAAACAA            CTGGCGGA ATTGA TCCGCGGG            GTGAACGTGGCAATG  58 501
 JH290_09140 2019833 .. 2019849 - -10.1  -3.29096   CGCATCAACCATCAA              CGCACGA CGC TCGCGCG              ACGCCGCACGGCTTT  66 64
 JH290_09125 NONE
 JH290_09120 2013995 .. 2014022 -  -6.2  -3.16564   CGCTGAGCTGATCAA        CTGCAGGTTGGCC TCA GGCCGGC-TGCAG        ATACCCATCCAGCGC  51 11
 JH290_09060 NONE
 JH290_09055 NONE
 JH290_09050 1999927 .. 1999944 -    -4  -3.10958   TACGCGAACAAATCA             CTGCCG ACAACG CGGCTG              GCCCAGGGCAGTCAG  45 87
 JH290_09045 1998968 .. 1998980 -  -3.3  -3.40403   GCGTCTGGATCAGAA                CGACT TGG AGACG                CTGCTCAGCCAGGGG  49 7
 JH290_09040 NONE
 JH290_09035 NONE
 JH290_09030 NONE
        ccsA 1995575 .. 1995591 -    -5  -2.92475   CCCATGGCGAGAAAG              GCGCTC ATGCG GTGCGC              TCGGTCAAGACGATG  46 13
        ccmD NONE
        ccmE NONE
 JH290_09010 NONE
 JH290_09005 NONE
 JH290_09000 NONE
 JH290_08995 1990985 .. 1991000 -  -7.5  -3.57144   CCGGCTATGCGGAAA              CCGCG CGCGAT CGCGG               CGAATTCCTGGGCGA  60 160
 JH290_08980 1986755 .. 1986799 - -12.9  -2.52464   GGCGCGCTCAATGGA CGGCAG-G-TGGCCGATGCCG GCCGT CTGCAGCGGCCAGCGCTGCCG GTGTTGTTCGTGACC  66 201
 JH290_08965 NONE
 JH290_08960 1982455 .. 1982484 - -17.3  -5.03314   TGCACGCGCAAAAAA       GCAAAAAGCCCTG CGTA CAGGGCTTCTTGC        GCATTACGTCAGATC 100 43
 JH290_08950 1981356 .. 1981371 -  -4.6   -3.5594   AACGCAGTCGGCAAA              GCTACG CTAC CGTTGC               GCACTTCCACTCATG  55 317
 JH290_08935 NONE
 JH290_08930 NONE
 JH290_08925 NONE
 JH290_08920 1977217 .. 1977241 -  -4.9  -3.14344   GACGGCGCGGAGGAA          CCGGGGTGTAC GGG GTACATGCCGA          TTCCGAGCACCGGCC  48 95
 JH290_08915 1977032 .. 1977065 -  -7.3  -3.37796   GCGGATCACCGACAA     GCTGCCGAACGAAGCC AAA GGCTGCTTGCGGC-GC     ATTGGCACCCCAGAG  58 122
 JH290_08910 1976470 .. 1976483 -  -3.9  -3.53012   TGCCTGGGCTGGAAA               TATCA GGCG TGATA                TTACATGGTCTACGC  51 35
 JH290_08905 1975085 .. 1975106 -  -4.4  -3.15583   CGAACAGACCGAACA           CTGGCTGC CCGACT ACAACCAG            CAGATCCCACACGAC  47 184
 JH290_08890 1972971 .. 1972991 -  -8.9  -3.29511   GCTATGCGGGCACAA            CACCGGGGG ATG CCCCCACTG            GCAAACACGTTGTAA  60 100
 JH290_08885 1972276 .. 1972308 -   -10  -2.81815   GGGAATCATCAACGA     GAAGCGCAGCGAGCTG GTG CAGCTC-C-GCACTTC     AATCGACTATTGGGA  59 199
 JH290_08860 NONE
 JH290_08855 1964930 .. 1964942 -  -4.1  -4.07568   CGTGCGCTGTTAAAA                GAATG GCG CATCC                GTTAGAGCCCCGGCT  61 241
 JH290_08845 1961249 .. 1961278 -    -5  -4.04206   CCATCGTCAGACAAA      CGAC-TGCC-AGGG CCAG CCCTTGGCAAGACG       TCATCATGGAGGGAA  63 353
 JH290_08830 1956957 .. 1956976 -  -7.8  -3.14344   TAGTGCTCCTATTAA            CGCCCAAG TCGT CTCAGGCG             TAGGGGCATCATTGC  56 157
 JH290_08825 NONE
 JH290_08820 NONE
 JH290_08815 NONE
 JH290_08810 1951839 .. 1951854 -  -3.2   -3.6502   CAGCGTTCAGCTAAA              TGCGCT TGGC AGAGCA               TCGAATGGCGGCATC  53 421
 JH290_08800 1950679 .. 1950705 - -12.3  -2.71712   CTTGGCGTGCGAAAC         GAAGGCGGCCA TTAAG CGGCCACCTTC         CAGAATTTGCCATGG  66 10
 JH290_08795 NONE
 JH290_08790 NONE
 JH290_08785 NONE
 JH290_08780 1948838 .. 1948876 -  -5.1  -4.09739   CGAACTGGCGGAAAA  GCTCAAGCGCGCCACCGC CGCA GCGGCCCCGCGCCTG-GT   GGTGGCCGAAGCCGG  63 520
 JH290_08760 1945508 .. 1945525 -  -3.3  -3.06183   CTGAGGCGCAGCTAA             GGCTGCG CTTT CACATCC              CGGTCGGCGACCGGG  43 52
 JH290_08755 1944432 .. 1944452 -  -7.6  -3.66288   TATCGTGGAAGACAA           TCAC-GCCG AACA CGGCGGTGA            GCCGGTGGCAGACCT  63 448
        msrP 1939794 .. 1939812 -    -3  -3.68827   CAGCTATCACGGAAA             CGGATGTC TTG GCCATGCG             ATCTCGAAGAGGAAG  54 174
        msrQ 1939127 .. 1939150 -  -3.1  -3.72576   CCGGGCGCCAGTAAA          GGTAGCC-CG CTGGC CGTGGCTACT          ACTCAGCGCGGTGTT  54 28
 JH290_08720 1938006 .. 1938022 -  -2.1  -2.52464   TTGCGGCTGAAGCCA              GGGGCTG GAT CAGGCCA              GCTTTTCAGCCAGCA  37 18
 JH290_08715 1937286 .. 1937300 -  -6.4  -3.37655   TTGTCTAAAAAACCA               TGCTGC TTT GCAACA               ATCCAGTTGTGCAGG  55 43
 JH290_08710 1936040 .. 1936072 -  -6.2  -3.28712   GGGTGTCGCGCAGAA     CGCACCGCCCGCACG CACG CAT-CAGGCCGCGCG      ACTCAGATCGTCGTG  52 28
 JH290_08695 NONE
        hutH NONE
        hutG NONE
 JH290_08680 1928232 .. 1928244 -  -3.3  -3.01712   GCTTTCGCTTGAAGA                TGCTC GAT GTGCA                GTGCCGCGGCCTTTG  43 116
 JH290_08675 1927240 .. 1927257 - -14.1  -4.05446   TCTGTGAATCAGAAA             CGCGCCG CTTG CGGCGCG              TTTCTTTAGCGCGCA  90 192
 JH290_08640 1914649 .. 1914681 -   -20  -2.78384   TGGTGCTGGACGACA     GCCGCAACGCGCTGG GCCG CCAGCGCGTTGCG-C      ATATCCGCGACGAAC  95 281
        asnS NONE
 JH290_08595 NONE
 JH290_08590 NONE
 JH290_08585 1903862 .. 1903881 -  -5.6  -3.14132   GCGGCTGGGCACGAA            GCGGAATG CCAC CAACCCGC             GCAGCTGGCGCCGAT  51 480
         can 1902888 .. 1902946 - -18.1  -3.38812   CCTTGGCGAAGAAGA CGCCCAGCATAGCCAACCG-GCGGCACC GATG GGTGCCGCGCGGCCGGCTGCGTTCAGCG TTCGCTATGGTCGGC  93 20
 JH290_08570 1901847 .. 1901878 - -11.6  -2.60496   GCCGCCGGCAAAGAT      CAGCAGCGCAA-CGC CTG GCGCCTGCGCCACTG      GCAGGCGCATGTCGG  65 482
        kynU NONE
 JH290_08555 1897127 .. 1897154 -  -8.2  -3.82083   GTATCACAATCCAAA        GCTGCGGCGCGC TGCA GGGCGCCGCCGG         TGCTGGTTAGTATCC  69 345
        sbcB NONE
 JH290_08545 1894944 .. 1894988 -  -3.9  -2.62396   GATGTGCGCACAGCA GCAGGCAGTGCGCGGGCATGC ATG GCGTGCCTGCGCTCAGAATTC CAGATCCAGCGCGGC  41 17
 JH290_08540 1894136 .. 1894186 -  -5.2  -3.59979   TGCTGGGACGGTAAA CGCACGCC-CGGCAGC-GTCGCCG ATGCA CTGCGGCCGCTGCCGTGGTCAGCG GCGCGGCAGCTGCGT  54 134
 JH290_08490 1883655 .. 1883665 -  -8.2  -2.99471   CTACCTCTACACAGA                 CGCG CCG CGCG                 ACGGCCGCGTTGTGC  55 184
 JH290_08465 1879347 .. 1879371 -  -2.1  -3.53224   CATGCGGCGGGGAAA         CTGCATCGGC GTTCAT GGCGATGC-G          ATCAGCGATTGCGGA  47 27
 JH290_08460 NONE
         nth 1877903 .. 1877918 -  -5.4  -3.55444   CGCGCACGCTGGAAA              GCGTTC CGCC GAACAC               GGTGCTGCATCTGGA  54 421
 JH290_08435 NONE
        pstS 1872557 .. 1872580 - -14.6  -5.67063   GGCATCACAAAAAAA          GACGCGGACC CGAA AGTCCGCGTC           CCGGTCCGGACGCCG 100 70
        pstS 1871290 .. 1871325 - -12.4  -2.69468   GAGCGTGAGATAGCA    GGATCGACGCGGCGCC CTCA GGCACCGCGTCGCAGC     GCAACCCGCCACAGC  66 56
        pstC NONE
        pstA NONE
        pstB 1868556 .. 1868566 -  -8.2  -2.62983   GGCAGGCCTACATCA                 GCCG AAG CGGC                 CGGTGATGTAGTCCT  53 12
        phoU 1867576 .. 1867588 -  -3.4  -2.67613   CATGAAGTAACCAAT                GATG CGTTT CATC                TGCGCGACTCCTGAG  39 159
 JH290_08400 1867137 .. 1867166 - -15.7  -4.39166   GGCCAGACACGAAAA       GGCCCGACCTGTG CTTG CACGGATCGGGCC        TGCTGACGTCAGCTG 100 54
         rnt 1865873 .. 1865911 -  -3.1  -3.62275   ATCGATCATTTCAAA  CGCATCAACGACCAGTAT TCGC ATGCCAG-CGGCGATGCG   GTGCTGCATGACGTG  49 519
 JH290_08370 1858520 .. 1858537 -  -9.1  -4.64846   CCAGAAACCAGAAAA             CCCCCGA TCGC TCGGAGG              TCTTTTTAAACTGGT  91 37
 JH290_08355 NONE
 JH290_08350 1852073 .. 1852088 -  -4.6  -3.34013   CAGGCCGGCAACGAA              GACGGC GCGC GCAGTC               CGTAGTCATGCGGCT  50 31
        metH 1848942 .. 1848979 -  -3.5  -3.32963   ACGTTGAGGTCAGAA  GCCTAGTCGGTCGAGGGC GCGAT GCCCTC-ACCG-CTCG-C  GGGACACGCGGTGAA  46 301
 JH290_08290 NONE
 JH290_08285 NONE
 JH290_08280 NONE
 JH290_08275 NONE
 JH290_08270 NONE
 JH290_08265 1834953 .. 1834976 -  -5.8  -2.56596   GCCCCGATCAATCGA          CCGGGGCGGC GCAT GCCGGCGCAG           TGGCGTTACTTGCGG  46 31
 JH290_08260 1834026 .. 1834036 -  -2.4  -3.29461   CAAGCGCGCCTACAA                 GGAG CAG CGCC                 CGGTGCTGGATGTGG  44 450
 JH290_08250 1831128 .. 1831157 - -14.3  -2.72344   GGGCACTGGGAAGCA       GGCGGGGCGGC-TA TTC TACGCCGCCCCGGC       GCCGGCTTCGCCGAC  75 11
        purB 1829701 .. 1829719 - -13.1  -2.94416   CAGGCTGAGCAGATA             CGGCCCG TACGG CGGGCCG             GTACTGGCCTTGCCG  70 46
 JH290_08240 1828878 .. 1828907 -  -2.7   -3.8372   ACGGGAACAACACAA       CGCAGCG-ATGGGC TTG GTCCACGCGCCGCT       GGCGCACGAGGTGGT  54 105
 JH290_08235 1828079 .. 1828098 - -11.4  -4.11216   GTCCGACTGGGAAAA            GCCGG-CGC TGC GCGGCCGGC            GAAGTGGCCTATTGT  84 151
 JH290_08230 NONE
 JH290_08225 1825509 .. 1825530 -  -5.7  -3.18031   TCTCGAAAAATTATA           CCCCCTTGC GCTT GTGAGGGGG            CGTCTGCGAGCTGAC  51 93
 JH290_08220 NONE
        sucB NONE
        lpdA 1819642 .. 1819675 - -12.4  -3.64703   GTTGCGGGACTTAAA     CGCATAACGCCGGG TTTTCG CCCGGCGTTAAGTG      ATTGCCGGGTTGGGA  75 99
 JH290_08205 1818860 .. 1818885 -  -3.2  -2.84634   TGCTAGATCACTACA         GCATCTGCGCG GGGTT CGCGCCG-TAC         TCCTAGCCGCTGCGC  42 75
 JH290_08200 NONE
 JH290_08195 NONE
 JH290_08190 NONE
 JH290_08185 NONE
 JH290_08180 1812499 .. 1812529 -  -3.4  -3.14229   AGAGTGCGATCAACA      GGGCAACAAAACG GTGCAT CATTTC-TTGCCC       GTCGCGTCGTCTTCG  44 13
 JH290_08175 1811096 .. 1811129 -  -3.8    -4.258   GGATCCACGAACAAA     TCCG-GCCAGCAGCA GCGTG CGCTACTGGCGCAGC     ATCAAAGCATCACGG  66 13
 JH290_08170 1810637 .. 1810658 -  -2.2  -3.38056   ATGGTCAAAAAATGA           CCAGCTGGC GTTAT GCC-GCTTG           CAGGCTCAGCTCACC  45 14
        recN 1801160 .. 1801199 - -14.3  -2.66272   GCGGAGGGAAAGTCA  CTGCGAACTCG-GGCGGG CACAT CGCGCCGCGAGCCCGCAG  CACCCGCCCGGTAAC  74 41
 JH290_08125 1799623 .. 1799648 - -14.7  -2.78216   TACCCTGATCAAGCA         GCAGCGAGCGG TGAT CCACTCGCCGC          GCTAGCGTCCTCAGC  75 36
        smpB 1797705 .. 1797728 -  -5.2  -2.62616   TGATGGTCGAGATGA          GCGGCACCAGC ATG GCCG-CACCGC          ATGTGTCCGGCGTGC  44 440
        ssrA 1794848 .. 1794878 - -11.9  -4.80882   ACCGCACATGAAAAA      GGCCAGTCG-TCTC TCTC GAGAACGCCTGGCC       TTAGTCGGTCGTCTT 100 53
 JH290_08085 1792017 .. 1792051 - -15.9   -3.4252   CCCGACCGACGACAA    CGGCCAGGCCTGTCGCT GAC AGC-ACAGGCCTGG-CG    TCACACGCTGCCCGG  85 26
 JH290_08075 1790544 .. 1790569 - -19.1  -2.50113   CATTACGGTATCAAT         CGCTGATCGGC AATC GCCGATCAGCG          CTGGATGACTCAGTC  87 35
 JH290_08045 1781454 .. 1781472 - -12.4  -3.82442   CCAAGACAAAAGGAA             CTCGCGCC GCA GGCGCGAA             AGCTCTGCGTTGAAG  81 235
 JH290_07995 1768179 .. 1768206 -  -4.8  -3.14132   GTGGCTGTCGATCAA        CCGCATCAGT-CG CGC CGCACCGGTGCAG        GCAGTGGCACCTTGC  48 3
 JH290_07990 1767109 .. 1767119 -  -8.2  -4.09739   TCAACTTTCCGAAAA                 GCGC CAA GCGC                 TACTTCGGCGTGCCG  72 323
 JH290_07980 NONE
 JH290_07975 1765413 .. 1765428 - -11.8  -3.91144   CGCAGACGGCAGAAA              GGCCCG TTGC CGGGCC               TTTCTGCTCAGGACG  81 59
 JH290_07965 1764385 .. 1764396 -  -5.8  -3.79113   ACGGCGGCATAACAA                GTCG GACG CGAC                 CGCGGCCGCGGAGCT  60 85
 JH290_07960 1763035 .. 1763054 -  -9.2   -4.2803   CATCTGAATTGAAAA            GGCCGGCA GCGA TGCCGGCT             TTTTTTCATGGCAAC  83 130
 JH290_07935 1757081 .. 1757095 -  -4.3  -3.55622   CTCAAGCCGGCCAAA               TGAGA TGAAC TCTCA               TTTGGCTATCCGGGA  53 160
 JH290_07930 1756213 .. 1756229 -  -5.7  -4.52857   AGCCGCCAGATAAAA              CGCCGCA CCG CGCGGGG              TCTTCGCGTGGTTGC  74 42
 JH290_07920 1753219 .. 1753240 -  -9.5  -3.17075   TTGCTCTTAACCGAA           TCTCAAGCCG TTA CGGCTTG-GA           CTGCGGCGCTTCCGG  61 14
 JH290_07915 1753035 .. 1753065 -   -22  -2.90496   GCGGGCTTCAAACGA       CAATGCCGCCTGGC AGT ACCAGGCGGCATTG       TTTTTAGAGCGGCTA 100 36
 JH290_07895 1750866 .. 1750876 -  -8.2  -3.62096   TGCGATCAGCGCAAA                 GGCC TCA GGCC                 GCGTTGCGCTCGTGG  65 19
 JH290_07880 1746230 .. 1746249 -  -6.3  -2.70932   CTGCGCCTTGAATCA            GCGCGTC TGCGTC GGCGCGC             TCAAAATGCGCTCTG  49 26
 JH290_07875 1743844 .. 1743885 - -10.7  -4.17608   GCGACTTAAAAAATA CGGCGTGGCTG-ACGCGCGC CTT GCGTGCCCACCGCCACACCG GTTTACGGAAGCTGC  84 28
 JH290_07870 1743617 .. 1743632 -  -7.5  -5.64274   CTAGCCACAAAAAAA              CCCCG TTTCAG CGGGG               TTTTTTTGTGCTTTG 100 51
 JH290_07850 1739600 .. 1739612 -  -3.3  -3.64703   TTCTTGGGAGCCAAA                CAAGC CAT GCTGG                GGTCGCTTACTGCTG  53 512
 JH290_07800 1728279 .. 1728302 -   -16  -4.00042   GGTCCTACGAAAGAA          GAACCCGCGC CAGC GCGCGGGCTC           GAAGAGCGCCGATTA 100 38
        parC 1725877 .. 1725890 -  -5.9  -3.82665   GACGACAGCATCAAA               CGCGC CGCC GCACG                CCGGATGCGTGAATC  62 146
 JH290_07790 1724556 .. 1724584 - -13.9  -3.05463   AGCCGGGCGACTCAA       CGCTGCGCC-GC CGCCAT GCTGGCGCAGCG        TGTGCCTGGAATCGA  75 262
 JH290_07780 1721197 .. 1721236 -  -3.7  -4.04319   GCAGAAATGCAGAAA TGCAGAGCATCCCTTCTCCC ACC GGGAGAAGG--TGCCCGG-A GGGCGGATGAGGGTA  61 282
 JH290_07775 1718931 .. 1718943 -  -4.8  -3.31461   CAGCCAGGCTCAGAA                GCTG TAGGC CAGC                TGCGGGTAGATGCGA  50 7
 JH290_07770 1717443 .. 1717477 -  -3.4   -4.3739   GAGCGGCGTAGAAAA     CATAGTCAGCAACCAC CAG GTAGGTGCGGACGGTG     CGGGGAACCACAGCG  64 113
 JH290_07760 1714062 .. 1714086 -  -9.9   -4.1552   CACCGCCGGAAGAAA          GCACCGGCGGC GGC ACCTCCGATGC          GCGCTTCATCGCACC  78 364
 JH290_07725 NONE
 JH290_07720 1706025 .. 1706035 -  -4.6  -2.62263   AGCCGCGCCACATCA                 CGGC ACG GCCA                 GCAGGGTGCGTTCGT  43 12
 JH290_07715 1703638 .. 1703664 -  -3.7  -4.45068   AGCGCGAACAACAAA        CGGCCAAG-GCCT GTC AGGCTCATGGC-G        CCGGCTCTGCGATGC  69 18
 JH290_07710 1702633 .. 1702649 -  -6.5  -3.25282   ATTAACCATCAGTAA              GTGATCG AGA CGGTCAC              CGTATCGGTATAGGC  53 2
 JH290_07705 1702250 .. 1702263 -  -3.8   -2.7083   CATCTCAGAAAGCCA               CCGT GGTGAT ACGG                GCAGCACCGGTCGGC  42 1
 JH290_07700 1701447 .. 1701472 -  -3.9  -4.37711   GCATGAAACGCAAAA         CAGCCGGCGG AGTATAG CCGCCGGG-G         CAGGGCGATGCAATG  66 74
        rpsB 1700250 .. 1700275 -  -4.7   -3.1552   TCGTATGGACGAATA         CGTGCGGCGGAA GTG TTCCGCCA-ATG         AGGAGACGGTGCAGC  48 146
 JH290_07690 1699304 .. 1699321 - -14.1  -5.75342   TGCGGGCAAAAAAAA             GCCGCGG CATG CCGCGGC              TTTTTTCGTCATCGA 100 51
 JH290_07685 NONE
 JH290_07680 1696552 .. 1696573 -  -9.3   -4.7373   GCAGCGCAGCAAAAA           GCCCGGCAG GCGC CCGCCGGGA            TTCATGGGCGCGCAC  93 162
         frr 1695898 .. 1695918 -  -5.3  -2.52543   AGGGCTCCGAATGCA            TGGCAGTGG ACG CCACGGTCA            GACCGTCATCAATTC  43 23
        uppS 1695149 .. 1695159 -  -2.4  -3.04144   GGGTCATGCGGAAGA                 CGTC TCC GTCG                 CCTTCTCGGCGATCT  41 3
 JH290_07665 NONE
 JH290_07660 1693087 .. 1693098 -  -2.2  -2.87319   CCGAACCGATGAAAT                CACC CATG GATG                 CAACTCGGCAGCGTG  40 47
        rseP NONE
        bamA 1689246 .. 1689277 - -24.6  -4.15222   ACCTGGTGTAACAAA      CAATGGCGGCCCGA GTAG TCGGGCCGCCATTG       TTTTGCTGCGTACGA 100 42
        lpxD NONE
        fabZ NONE
        lpxA NONE
        lpxB NONE
 JH290_07620 1684368 .. 1684397 -  -2.7  -3.61398   GGGCGGGTGGAACAA       GGCTTGACAGCATG GTT CACGC-GCCGCGCC       CAGGCGGGGCAGGGG  49 179
        dnaE 1680666 .. 1680687 -  -5.7  -3.91798   GAATCGGGAATCAAA           GCAGGGCGG CTGG CTGCTCTGC            TGTTGCGATTCCCCA  62 56
 JH290_07610 1679594 .. 1679608 -  -3.5  -3.05816   TGACCTGTGACTCAA               TGCCC TTCGT AGGCA               CCGTAGCTGCGCAGG  43 7
 JH290_07605 1678549 .. 1678567 -    -8  -3.14463   AAGGGCGTGGACCAA             GGCCGGGC ACT GCCCAGCG             GGCGCGCGCTGCGCC  54 235
 JH290_07595 NONE
 JH290_07590 1676028 .. 1676055 - -14.8  -5.30686   AACAGGCATAAAAAA        GCGCTCCCGATC GAAA GGCCGGGAGCGC         CTACGGCGGCGATCA 100 38
 JH290_07575 1672360 .. 1672381 - -11.5  -3.69395   CCGATCACGCAACAA           CCGCCAGGA ATGC TCCGGGCGG            CTGCGCGGTGTGATC  76 70
 JH290_07560 NONE
 JH290_07555 1669066 .. 1669091 -  -3.9  -3.90744   CGGCTCCGGAAACAA         GC-GAGCGGGGA GCT TGCCCGATCCGC         ACCGTTACGGCCAGC  58 191
 JH290_07550 1666688 .. 1666704 -  -2.1  -3.53224   TATTGGCCTGCGAAA              CCTTGCC CTC GGCCAGT              GAGATCACCGCGCTG  48 452
 JH290_07535 1663914 .. 1663926 - -10.5  -3.57792   GTATGGAGGCGGAAA                GCCGC GCT GCGGC                ATGCATTCATCCAAG  70 105
 JH290_07530 1663334 .. 1663351 - -14.1   -5.5353   GAGACGAACAAAAAA             GGCGCCC TCAC GGGCGCC              TGCTTTTGCGACTCT 100 59
        metG NONE
 JH290_07520 NONE
        rnfB 1659762 .. 1659774 -  -4.7  -3.01712   TTCGTCTGCTCAACA                TCGCC GTT GGCGG                CCAGGCGCGGACACC  47 97
 JH290_07510 NONE
 JH290_07505 NONE
 JH290_07500 NONE
 JH290_07495 1656456 .. 1656484 -  -8.8  -4.96848   CGGCGCACACAAAAA        CATCCGCGCAAA GTGCG TGCGCGCGGACG        AGTCTGCTTTGCCAG  93 220
 JH290_07490 NONE
 JH290_07485 NONE
 JH290_07480 NONE
 JH290_07475 NONE
 JH290_07470 NONE
 JH290_07465 NONE
 JH290_07460 1649190 .. 1649214 -  -9.9  -3.39327   GGCCGAGATCGACAA          GCTGCTGGCGA TGG CCGCCAGCGAC          AAGACCAAGATTCTG  65 303
        mprF 1645147 .. 1645157 -  -6.8  -3.18264   GCCCGCACCCACCAA                 GCAG AAC CTGC                 GCATGACCGCGCTGT  52 379
 JH290_07405 1638395 .. 1638436 - -20.9  -5.63517   TGCTCAAAGAAAAAA CGCCGCTACCCGATCACCA CGCA TGGCGACCGGGCAGCGGTG  CGGTTACGCCGGCAG 100 29
 JH290_07400 1636595 .. 1636608 -  -4.5  -4.28994   GAGCAGCTATCAAAA               CGACT GCGC AGCCG                CCAGGCGGGCGCGGC  66 381
 JH290_07380 1633873 .. 1633917 -  -5.6  -2.95388   TAGGCAATCGATACA GCCGATGCAACCGCGA-CCGC GCGT GCGGGTTACGGCAGGATCAGC TTGGTGCACACGCGC  48 46
 JH290_07375 NONE
 JH290_07370 1631739 .. 1631752 -  -4.5  -3.08679   GCCTTGCAGGCAAGA               CGG-CG GGG CGTCCG               GCAGCAACCGCGCAG  45 67
 JH290_07365 1631382 .. 1631411 - -21.5   -2.6891   CATGACAGTACAGCA       CGACGTGCCGCCC CGCA GGGCAGCACGTCG        GTCGAACTCAGGCGC 100 33
 JH290_07345 1628465 .. 1628475 -  -3.2  -4.28994   GAGCAGCTATCAAAA                 CTAC TGC GCAG                 CCGCCAGGCGGGCGC  64 291
 JH290_07335 1627759 .. 1627773 -  -7.8  -2.93723   GCGGCAGCAAGGACA               GCCAGC TGC GCTGAC               AGGCGCCGCTGTTTA  53 38
 JH290_07325 1627007 .. 1627025 -   -16  -4.25566   AAGAACTATGCAAAA             GGAGCGGC ATT GCCGCTCC             TTTTGTTTGTGCGTG 100 113
 JH290_07315 1625690 .. 1625724 - -12.8  -5.64421   ATGGGAAACAAAAAA     CGCGACGTCTCCAGAC CCT GTCCGATCACGTCGCG     CCGCAACATTTTAAA 100 348
 JH290_07310 1624050 .. 1624064 -  -2.8  -3.05384   CGTTTGCGCAGCGAA               GGTTTC CGC GAAAGC               GGTGGTGAAGGTTTT  42 475
 JH290_07300 1620124 .. 1620137 -  -9.5   -3.1211   GATTAGATTAGGCAA               CGCGC TATT GCGCG                CCCCCGACATGATGA  61 104
 JH290_07295 1619694 .. 1619724 - -20.6  -3.68506   CAACACCCAGGCAAA       GAAAAAGCCGCTGG AAA CCAGCGGCTTTCTC       CGAACGCGCTTGGAG 100 52
 JH290_07290 1619009 .. 1619022 -  -2.3  -3.64703   GCGCCGCGAGGTAAA               GGAAG AAGG CATCC                GCAGATCCTAGCGTG  49 167
 JH290_07285 1617289 .. 1617303 -  -4.2  -3.67976   GTGACGAATCTCAAA               CAATCG CGC CGTTTG               TGCCACCCGGTTCGG  53 6
 JH290_07280 NONE
 JH290_07275 1616039 .. 1616057 - -14.6  -2.76815   AGGTGCTGCAACAAG             GCGCTGGT ACC ACCAGCGC             AATCCAGACGCATGT  75 260
 JH290_07270 NONE
 JH290_07265 1614536 .. 1614546 -  -4.6  -3.55071   GTACAGCGCTGCAAA                 CCGC TTC ACGG                 CGTTGTTTCCGCGCT  55 20
 JH290_07260 NONE
 JH290_07255 NONE
        pdeM 1609801 .. 1609811 -  -8.2  -3.14564   GCACCGTTGCATCAA                 CGCG GTG CGCG                 CGTTGTCACCGCACC  58 31
 JH290_07200 1600270 .. 1600290 -  -8.2  -3.28712   CGCGGTGTTTGAGAA            GCGCTAGC GCGAG GCTTGCGC            GTTTGCGTCACGGTG  60 179
 JH290_07190 1597737 .. 1597775 - -10.9  -2.74523   CGATCTGCAACACGA   CAGTGACGGCCAGCCGA TCGAT CCGGCCGCCCGTTACCG   GCTCGATCCGCAGGA  60 312
 JH290_07140 1586687 .. 1586704 - -11.3  -5.75342   GGCGGTTAAAAAAAA             CGCCACT GCGT AGTGGCG              TTTTGGGTTGAGATC 100 43
 JH290_07105 1577620 .. 1577641 -  -4.3  -4.46212   CCTCCCAGGACAAAA           CGGCCGAAT CGAA ATGAGGCCG            GCCACGGTGTGGCCG  69 339
 JH290_07100 1574776 .. 1574794 -  -4.5   -3.5485   GATCGAAAACATGAA            GCGGC-CG ACAG CATGCCGC             AGGTCATCGCGCCTG  53 142
 JH290_07095 NONE
 JH290_07090 1570460 .. 1570487 -    -4  -3.01712   CGTTTGGCGGCAATA        CGCACGAGGC TGGAGAAC GCCATGTGCG         TTGATGTCCAGACCG  45 512
 JH290_07080 NONE
 JH290_07075 1567364 .. 1567386 -  -6.3  -3.14132   TTGCTGCGCTATCAA           TTGATCAGG TTGGT CCAGATCAA           TGTGATTTGAAAAAA  53 143
 JH290_07070 1566096 .. 1566111 -  -4.6  -4.16842   GCCATCGGCAACAAA              CGCGAG CGTG CTCGGG               AACAGCGTTGGGAAC  66 511
 JH290_07040 1559249 .. 1559269 -  -2.4  -3.65714   AAATCAGACTCCAAA            CCGGGTCG CTAGT CGAATCGG            GGGGATGTCGGGTTC  49 76
 JH290_07035 NONE
 JH290_07030 1558441 .. 1558455 -  -2.7   -3.1364   TACGGAAGGATGGAA               CTGGG TCTCG CCCCG               TGACCAATGGGCTGA  43 380
 JH290_07025 1556565 .. 1556588 -  -6.6  -2.57344   GATGTTGCTCAGAAT          GCCACCCAGC GCGA GCCGGCTGAC           CAGATCCGAGTAATG  48 492
 JH290_07010 1554418 .. 1554452 -   -28  -3.32343   GCGATACGGGTACAA     CGTGCAGGCTGCCGCA CGG CGCGGCAGCCTGCACG     CATGGTCAATCAGGC 100 35
        sctU NONE
 JH290_06955 NONE
        sctP 1542839 .. 1542854 -  -6.1  -3.28924   CAGCGCCTGCGACAA              GTCGC GTGCCG GCGAC               GTCAGGCTCGGCTCT  52 91
        sctQ 1541876 .. 1541897 -  -2.1  -2.63715   AGCGAGCCGACATCA           GGCATCTGC ATGC GCAGTCTCC            GACATGCTGAGGATC  38 1
        sctR 1541224 .. 1541242 -    -3  -2.80994   GTGAATCGCACCAGA             TCGTCATG GTC CATGGCGT             CACCGATAACTCAGG  40 25
        sctS 1540969 .. 1540991 -  -3.2  -2.71791   AGCGCCTGGCGAAAT           GCGCCGGATC ATG GAAACGCCGC           CTGCATCAGCGCCTG  40 11
 JH290_06930 NONE
 JH290_06925 NONE
 JH290_06920 1538960 .. 1538972 -  -4.1  -3.34192   AACGTGGTCAAGGAA                CTCGA TGA TCAAG                GCATGCTGGCGATGT  48 21
 JH290_06915 1538568 .. 1538597 - -12.2  -2.78463   ATCTGTCGTACGACA       TG-CGCAGGGCCA TGCAC CGGCCCTGCGTCA       TGTCAGGGCCTATTA  66 38
 JH290_06910 1537955 .. 1537973 -    -3  -3.90744   TGCGGCGGGAAATAA             CCGCGACA CAG CGTGGCGA             TGTCCTACAGCACAG  56 124
 JH290_06905 1536498 .. 1536521 -  -9.6  -3.61398   TGCCGGCCGCAACAA          CAGACG-CAGC CGC GCCGGCGTCTG          TCGCGTGTTGGCGGT  68 317
 JH290_06890 1532489 .. 1532538 - -23.7  -2.78816   CGACCGCGCACCAGA GACAGGTTCGCCAACCGCAGCGT CGCG ACGCTGCGGTTGGCGATCTTCTC CGGGCCTCAGTAACG 100 127
 JH290_06875 1526697 .. 1526714 -  -4.7  -3.75169   GATGATTTCAGCAAA             CAGCTGC TGGC GCCGCCG              TACAACACGTTCGTG  55 243
        mutS 1516453 .. 1516482 -  -9.3  -3.70109   TACAGCACGCAATAA       CTAGCAGCATC-CC TGA GGTGGCGCTGCTAG       CGCTGACAAGCGTGC  71 249
 JH290_06835 1515519 .. 1515543 - -10.1  -2.77235   CGAATTATCCAACCA          TATCGATAGCG TCA CGCTATGGATA          GGACGTGGGTGCCCA  60 54
        katG 1512906 .. 1512937 -   -26  -2.91681   GCGCAATGCCACAGA      CGCAAACGCCCCGG CGAA CCGGGGCGTTTGCG       TTACTGCAGTGGCGT 100 106
 JH290_06820 1510291 .. 1510308 -  -6.9  -2.90992   AACTTCGCTAAACGA             TCAGCGC GGCT GCGCTGC              AGGCGGCTCGGTCAG  50 8
        ccsA 1500386 .. 1500405 -  -9.2  -3.34398   GTCGTGGCTGAAACA            GCAGCCAC CTCG GCGGCCGC             AATGCGTCTCAGCGC  63 177
 JH290_06760 1497267 .. 1497322 - -21.9  -3.18118   GCATTTGAGAACACA CGCCATGCCGCCATCGCGCACGC GGTGCAGTGT GCAGGCGCGATGGCAGCGTGGCG GCATCATCCACAGCG 100 72
 JH290_06750 1495610 .. 1495623 -  -6.7  -4.56597   CTCTCTCTCCAAAAA               CGAAC CCGG GTTCG                TGGAGGGGCGACGCT  78 223
 JH290_06745 1494053 .. 1494083 -  -7.5  -4.28994   GAGCAGCTATCAAAA      CGACTGCGCAGCCGC CAG GCGG--GCGCGGCCG      GTGCTCGGAATCGGC  76 175
 JH290_06725 NONE
 JH290_06720 NONE
 JH290_06715 NONE
 JH290_06710 1486504 .. 1486517 -  -3.1  -3.49114   TATACGACATGACAA               CCT-CC GTT GGCAGG               ACGCACGGCGTGCGT  49 188
 JH290_06705 NONE
        trxC 1485180 .. 1485204 - -19.3  -2.70932   TTGGCGCTGTAAGCA          GTGCGGCGGCC ATG AGCCGCCGCAC          TGCGTTCAAACGGCT  87 329
 JH290_06690 1482312 .. 1482326 -  -7.1  -4.57755   AGTGACCAGATAAAA               CGCGT TGCCG ACGCG               GATCGCCGATGGGTC  78 202
 JH290_06650 1473474 .. 1473503 - -10.7  -3.17714   CCAAACGTCCAGCAA       GACTGGCG-TGCAC GAT GCGCCGCGCCAGTC       TGCGACCGTGTGCGT  67 76
 JH290_06630 1465078 .. 1465108 - -14.7  -5.12707   CTAAACTGCAAAAAA       CAGCGGCGCCAAG GGAAA CCTGGCGCCGTTG       TCGTTTATGGGTGTT 100 447
        rpsT 1447719 .. 1447732 -  -9.5  -5.60993   GCGCCCACAAAAAAA               CCGGC CAAG GCCGG                GTTTTCTTGTGCCAT 100 78
        uvrA NONE
 JH290_06535 1442076 .. 1442100 -   -15  -5.63517   CGCGCAAATAAAAAA          CGGCGGCTCC ATAAA GAAGCCGCCG          TATGTCATTCACCCG 100 59
 JH290_06530 NONE
        tesB 1440095 .. 1440119 -  -9.1  -2.73875   TGCCGTGCAAGATCA          CTGCGCCGCGC GCT GCGTAGCGCGG          ATGTCTCGCCCGGGC  57 74
 JH290_06520 NONE
 JH290_06515 1437878 .. 1437897 -  -3.4  -3.68302   GCAACACCGTAACAA            GGCGCCGA TCGA CCGACGGC             CTCCTGCAACTGCAG  54 93
 JH290_06505 NONE
 JH290_06500 1434748 .. 1434763 - -10.4   -3.1706   AACCCACGGGATGAA              GCCGGA CTAG TCCGGC               CCTCTCTGTTCCTTA  64 207
 JH290_06495 1433931 .. 1433950 -    -2  -5.66229   ACTAAGAACAAAAAA            CATGTGGC CTGG GCCAGAAG             TTTGTAGTGCGCCAT  93 155
 JH290_06490 1432842 .. 1432862 - -10.5  -3.16742   GCCAACGTGCAGCAA            TCACGAAAC ATT GCTTCGTGA            ACCATGGTGGCTACA  64 158
 JH290_06480 NONE
 JH290_06475 NONE
 JH290_06470 1430019 .. 1430043 -  -4.1  -2.87881   GAAGGCTCGGATAGA          TGGCAGCGATG CGG CAACGCTGCGC          CCGTTCCAGCGCCTG  44 42
 JH290_06465 NONE
 JH290_06460 1428303 .. 1428317 -  -2.1  -3.28712   TGTGCTCGTCCATAA              GC-GGA TGTC TCCAGC               AGGGTTGGGAATCAG  45 180
 JH290_06455 1426646 .. 1426663 - -12.7  -3.34895   CCGACGCCGAAGGAA             CTCGCCG AGCG CGGCGAG              CGATGGGGCCCGTAC  71 228
 JH290_06410 NONE
        minC 1420243 .. 1420253 -    -4  -2.94322   ATTTCAGCCAAAGGA                 TTTC TCC GAAA                 TATTTCTGTGGTTGG  44 47
        minD NONE
        minE 1419137 .. 1419164 - -21.4  -3.84406   GGTGGACCACAACAA        CACGGCACCGTG CGCA CACGGTGCCGTG         CAGCTTACTTGTCGC 100 30
 JH290_06390 1418185 .. 1418202 - -11.3  -2.57132   CTGTGCGCCGACAAG             GACCTGC AACT GCAGGTC              GCACCGCTGCCACCG  59 407
 JH290_06375 1414640 .. 1414673 -  -2.3  -3.53012   GCGGCGTGTCGGAAA     GCGGTCGGACTCGGGT TGG ACCGGCGTT-AACCGC     ACTGTGTTTGTTCAG  47 37
 JH290_06370 1413809 .. 1413825 -  -2.1  -3.14931   CGGATGCGGCAGCAA              GGTGCTC ATT GCTCACC              TCCCGTCAGCACCAG  43 14
 JH290_06365 1412107 .. 1412129 - -14.9  -4.42238   TCAGGGCAAGCAAAA           GCGCCATGC GTGCT GCATGGCGC           CGGTGAATCGGCAAG 100 58
 JH290_06360 1409973 .. 1410013 - -21.9  -2.50016   CGCGATTATCAACAG  GTCGTTATGCGGCTGCCGG GAT CCGGCAACCGCATGACGTC  ACGCACGTGGATCAG 100 37
 JH290_06355 1407913 .. 1407944 - -18.8  -3.76224   TTGCGATCCAGCAAA      GGCAGCGTCGCAGGC GTG GCC-ACGACGCTGCC      ACTGAAACGGCTAAC 100 45
        gcvP 1402118 .. 1402142 - -17.1  -5.27399   CAAGACACTAAAAAA          CCCGGCCACGC TAC ACGCGGCCGGG          TTTGAGTTCAGCCAA 100 58
 JH290_06325 1399371 .. 1399392 -  -7.3  -3.35813   CTGCATGCGAACGAA           CACTCACAT GCAC ATGCGAGCG            CGTTGAAGGTCAGCG  58 132
 JH290_06320 1397112 .. 1397147 - -14.8  -3.27525   GTGCTTCAAATGCAA    TGGGCGCGAAACGACAT GGA AAGTCGCT-CGCGCCCA    AGGCAGCTTTCGGTG  82 52
 JH290_06295 1394205 .. 1394241 - -18.1  -2.70932   TCGCCCGTTGAAGCA    CTGACAGGCACGCCG TGCAATG CGGCGTGCCTGTCAT    GTTTGTGGCTTAGAG  86 178
 JH290_06270 1387382 .. 1387393 -  -5.8  -3.61398   CTCCGGCGTGAAGAA                TGGC ATCG GCCA                 ATGGCATACGCCGCT  57 44
 JH290_06225 NONE
 JH290_06220 NONE
 JH290_06215 NONE
 JH290_06210 1373248 .. 1373278 - -12.6  -4.23781   GTGACGAAAATGAAA       CGGACCCAGTGCAT TCG ATGCACTGAGCCCT       GTCGTACCCCATCAA  89 85
 JH290_06205 1370739 .. 1370751 -  -3.3  -3.54543   ATCCAGGCCGCCAAA                CTGAG CGA CGCAG                AGCACTCACTCTAGC  51 31
 JH290_06185 1359397 .. 1359426 -  -4.2  -2.87132   CCCGCTGCGTACACA       CAGCCACGCG CCGTTGATTT CGGGTGGCCG        GAGTATTCATGCGCC  44 74
 JH290_06165 1355033 .. 1355043 -  -8.2  -3.01712   CGGTGCTGGCGAAGA                 CGGC AAG GCCG                 GCAAGCAGCGCCAGC  57 222
 JH290_06150 1350942 .. 1350957 -  -4.6  -3.08679   TGGGGCGACTCAAGA              CAGCAG CAGG CCGCCG               GTGGCGCCGAACACC  47 4
 JH290_06145 1348917 .. 1348957 - -12.6  -3.15861   GAGCAGCCGCAGTAA CCTGGCCACCACCGC-GTT CGTC AACAGCGATGGCAGCCTGG  CGACGGTGGTGATGA  69 202
 JH290_06135 1347153 .. 1347176 -    -3  -4.34402   GTGCGCAGACCAAAA          GCCCCTCTCC AGCG GGAGAGAGTT           GGGGTGAGGGTACGT  64 250
 JH290_06120 1344398 .. 1344422 -  -6.4  -3.32521   AGCAGATCTTCAGAA         CCTGGCAACGG CAGA CCGTTCCC-GG          CTGCCGCCAGAGCTC  53 221
 JH290_06110 1341493 .. 1341524 -  -5.9  -3.39895   TGGCCGAGCAAGTAA      CGCAGG-CACTG GCGCAGGTG CAGTGGCCCGCG      CGCCTGGAGCCCGAC  55 482
 JH290_06050 NONE
 JH290_06045 1327672 .. 1327720 - -16.8  -2.94416   GACGCGTAGTACAGA CCCTGCAGCGCTATCGCCCAGC TAGTT GCTGAGCGATAGCGTTACAAGC AGCGAGACGGAGTGC  83 123
 JH290_05995 NONE
 JH290_05990 1315265 .. 1315285 - -18.3  -5.60993   TGCGGGACAAAAAAA            CAGGGCGCC ATA GGCGCCCTG            TTTTCTCTGCATCAC 100 82
 JH290_05965 1305732 .. 1305771 -  -4.9  -3.73068   CTTCTAAGCCAACAA  GACCGCGGCCCAGAACGG AGGTG CCAGCC-AGGCCACGATC  ACGGTCGTACAGCCG  58 115
        prpR 1287630 .. 1287642 -  -6.2  -3.68351   GCGTCACTAGCGAAA                GCCG TGCCG CGGC                GATCTGTTCTAGCGC  60 68
         maf 1275297 .. 1275351 -  -7.7  -3.16564   GGTGGATCGCATGAA TCGCTGG-GCGCAGCAGTTCGGGTGGG ATG CGCAACCGGACTGC-GCACGCCTGCGT TGGCTGATCGCCCGG  56 279
 JH290_05810 NONE
 JH290_05805 NONE
 JH290_05800 1267038 .. 1267053 -  -2.5  -3.22298   GGTACTCATGAGGAA              GCTCCG GTTCG CGG-GC              GATGCTGCTGCAGAT  43 0
 JH290_05795 1266447 .. 1266467 -   -14  -4.61199   ACGCCACATACAAAA            CGCCGCTC CCTGT GAGCGGCG            TTTTTGTGTCATCTC 100 53
 JH290_05725 1257049 .. 1257061 -  -7.7  -4.64676   GTACGTGGAAGAAAA                GTCCT ACC AGGAC                TACCGCGCCAGCGGC  83 99
 JH290_05710 1255345 .. 1255368 -  -6.6  -3.05384   GCGGTCGCCAGTTAA          GGCGGCGC TGGAGGAC GCGCTGCC           CGCGCGGTCAGTGAC  51 33
        gloB 1252679 .. 1252693 -  -2.7   -2.8598   ACACACCCAGAAGCA               GGCGC CTCAT GCGCG               AAATACGTCTTTCCA  40 17
 JH290_05685 1251459 .. 1251476 -  -5.5  -4.58395   GCGATGCCCGAAAAA             TGCTGCA GCTA TGCAGCC              GCGCGGTGCGCGCCG  76 80
 JH290_05610 1239183 .. 1239207 - -20.1   -4.8667   TAGATCGCACAAAAA          GAAAGGGCGCC GAC GGCGCCCTTTC          TTTTTGGAAGTGGGT 100 117
 JH290_05590 NONE
        phoB NONE
        phoR 1233140 .. 1233192 -  -5.6  -3.04144   GCGCCATGCGCAACA TGCGCCACATC-CAGCGCTGCG TCGGTGCAGTG CGCAGCGCCGTGGCGCG-CGCA TCCTTCATATCACGC  49 35
        ppk1 NONE
         ppx 1229291 .. 1229322 -  -7.2  -3.17075   TGGCGCTTAACGCAA      CTGCGATGGGAACGC CCG GCGT-CCCACAGCCG      ACAATTCCCCATTCC  56 86
 JH290_05565 NONE
 JH290_05560 1227486 .. 1227498 -  -4.7  -3.78778   GCATCAGACGAACAA                GGCGG GAA CCGGC                AACCACCACAACGAG  58 1
        lpxH 1226241 .. 1226277 -  -2.8   -3.6579   AACGCAGCGGAAGAA   CGCGC-GCTGCAACGCC TGCA GACACAACTGCAGCGCG    ACCGTTTTTATCCTG  53 367
 JH290_05540 1224047 .. 1224074 -   -12  -3.01791   ACGGCCCGTTCAATA        TCGAAGCGCGCC TGCT GGCAGGCTTCGA         TGAAGACGAATTGGC  65 181
 JH290_05490 1211496 .. 1211533 - -16.3  -3.06133   GAACGCCCGATGCAA   CGTGCGGCGCTTGATGGC CGT GCCATCCAGCGCCGCT-G   CCGGCATCCGCTGTC  84 197
         tdh 1210071 .. 1210086 - -11.8   -4.2349   GGCTGACATGCAAAA              GGCGCC TTCC GGCGCC               TTTTGCGTTTCACAG  86 56
         kbl NONE
 JH290_05450 1202757 .. 1202787 - -14.6  -3.63515   CCTGATGCTCAACAA       GCCGCGCGGCGTGG TCA CCACGGTGCGCGAC       GAGCAGGGCAGGGAC  85 495
 JH290_05430 1199038 .. 1199054 -  -3.6  -3.99985   CACAGATCGAAACAA              GCCAGC GCATG ACCGGC              AAAAATTATGTCGCG  58 169
 JH290_05425 1196413 .. 1196433 -  -5.4  -3.99374   CGTCAGGAAGAAGAA           CTG-CGCGA TTTG CCGCGCCAG            TGTCCTGGCGGCAGC  63 110
 JH290_05415 1192829 .. 1192855 -  -6.4  -2.69977   AGAGTCCACACAGGA         GCGAAGACGCAA GCT TAGCGGCATCGC         GTGCTGCGTGGCGCG  49 43
 JH290_05410 1192094 .. 1192112 - -17.4  -5.05601   GATGAGATAGAAAAA             CGCCGGGC ATT GCCCGGCG             TTTTTTTTGTGGTCA 100 110
        typA 1188296 .. 1188331 - -10.4  -2.74012   CCAGGATCGCAAGCA    TGCCCTTGACCGCCTC GAGC AAGGCGATCAGGTGCA     GCCCCGGATGCGCAC  60 90
 JH290_05390 NONE
 JH290_05385 1185920 .. 1185963 -  -9.6  -4.63932   TACCGGCGAAGAAAA GCCCGCTTCCCGTGCGC CGCAGCCGATT GCGC-CGGAAAGCGTGC GCTCGCCGGGAGCGG  86 250
 JH290_05360 1180922 .. 1180939 - -14.1  -2.72227   AAGATTTTTGAAGGA             GCCCGGC TGAT GCCGGGC              TTTTTCGTTGTGGAC  72 425
 JH290_05095 NONE
        prfA NONE
 JH290_05085 1135609 .. 1135634 -  -5.3  -3.47349   GTGGCAAATCGATAA         GCC-GCTCTCCC TGG GGGCGAGAAGGC         ACAGCTTGCGCGCCA  53 477
        moaB NONE
        ppk2 1133950 .. 1133972 -  -3.2  -3.14132   CTGCGCCTGGACGAA           GTGCTGTTGG CGT CCTGCAGCCC           GCTCGGGCCGCAGAC  44 203
        wrbA NONE
 JH290_05045 1129316 .. 1129356 -  -4.6   -3.7941   CACGCCGGACAACAA GATCGT-GGTGGTGGCGGT CAAC ACCGGCACCGCCCACCAGC  GACTGGATCTGACCG  58 322
 JH290_05035 NONE
        ybaK 1126506 .. 1126516 -  -6.8  -3.21099   GCTGCTGACCAGTAA                 TGCG GTA CGCA                 CTGGCCTGAGCGCTG  52 430
 JH290_05000 1118512 .. 1118538 -  -3.5  -4.59853   GGAAGTCGGCAAAAA         TCGCGGCGGGC GGGGT GCCTGCTGCCA         AGCGCCCGACGCCTG  69 248
 JH290_04995 NONE
 JH290_04990 NONE
 JH290_04985 1116980 .. 1117016 - -11.5  -3.09327   CCAGCCCAGCGAATA    CTTACGCGCACGCGCCA ACG CGGCGCATGCGCTCAAT    CATCGACCGGCGGAT  66 21
 JH290_04980 1116424 .. 1116448 -    -5  -2.78384   CGTCGTTTGACTACA         GCC-GACG-TCG CAG CGATCGCCAGGC         GACCAACGCGGGGAT  44 57
 JH290_04970 1114114 .. 1114144 - -11.1  -4.07568   GCGCCGCTGTCAAAA      CGGCTGCGCAGCCGC CAG GCGG--GCGCGGCCG      ATGCTCGGCGTTCTC  82 301
 JH290_04945 NONE
 JH290_04940 NONE
 JH290_04935 NONE
 JH290_04930 1105849 .. 1105873 -  -7.7  -3.66784   CGATGCCGAAGACAA          GCTGCTGCGCG ACG CGCACCGCATC          GCCGATATTCCCGGG  63 446
        ahpC 1103217 .. 1103237 -  -4.5  -3.19157   GAGGAAGGGGATGAA            CCGCAGCCG GCG CGAAGGCGG            GGTGCGTGCTGGCGA  47 114
        ahpF 1101502 .. 1101539 - -13.4  -2.57647   ACGGACTAGACCAAC   CGCAGCTTAGCGCCCGG GCGGG CCGGGCGCTG-GCTGAG   CTCACGCTTACGCAG  71 33
 JH290_04905 1100440 .. 1100459 - -11.4  -4.49389   AGTGGACAAGCAAAA            GGCGACAC CTGC GTGCCGCC             TTCGTCCATTGTCGA  95 81
         rnk 1099832 .. 1099858 -    -5  -2.62184   GGGTCGGGGATAGGA         CGCAGCGCGTTA CGT TAGCGCGCTCAG         CGACGGAAGTCGCCC  43 22
 JH290_04895 1098773 .. 1098796 - -15.3  -5.38958   ATCCACAAACAAAAA          CGCCTGCGG GCCATG CCGCAGGCG           TTGGAGGTGACGCAA 100 53
 JH290_04890 1097865 .. 1097884 -  -7.8  -3.72695   ATGCGTCGCACGAAA            CCTCCCCA GCCG TGGGGAGC             CGCAATTCTCGCTGA  65 119
 JH290_04875 NONE
 JH290_04870 NONE
 JH290_04865 NONE
 JH290_04850 1090010 .. 1090027 -  -2.5  -3.01712   GCGCCGTTGCGAACA             GCGGCGC GGCG GAGCCTC              ACTTGGCCCAGGTGT  41 24
 JH290_04845 NONE
 JH290_04840 NONE
 JH290_04835 NONE
 JH290_04830 NONE
 JH290_04825 NONE
        rlmM 1085453 .. 1085476 - -14.6   -2.6342   GCTGAAATCAAGCGA          GCAGGCTGGC GCAA ACCAGCCTGC           CGTGATGCATGCGCT  74 222
 JH290_04810 1083245 .. 1083265 - -10.4  -3.28712   TGCGTGCCCTGAGAA            CCGCTGCG ACGTG CGCAGCAG            TTTCAGCGTCCGGTT  66 28
 JH290_04805 1082416 .. 1082458 - -15.8  -3.15758   AGAACCGCTGATCAA CGCATCGACGTTGCAGGATC GTGCG GA-CCTGCAACGCCG-TGCG TGCGCTCAGCCAGGG  83 31
 JH290_04800 1081777 .. 1081820 - -13.2  -3.71848   CCGCTGCATGAATAA CTGTGC-GCGTGGCCGTGCG GCGGCG CGCACGGCC-CGCTGCGCAA GGAGCGCGGGCAGTT  81 39
 JH290_04795 NONE
 JH290_04790 1080297 .. 1080350 - -14.6   -3.1733   CGGTGCAGAAAACCA CTGGCGGCAGCGATGGGCGGCACGTGC GTT GCACGGGCCGCTCA-CGC-GCCGA-AG GCGTTGCTCAGTTGG  80 33
 JH290_04785 1078706 .. 1078762 -  -7.2  -3.91084   GCATTGGCAAGCAAA GCTGCAGCAGCGAGCGCAACGCGACGCA TGG CGCAGCGCGTTGCGCATGTTG--GCAAC GTGATCGGTGTTGCA  68 65
 JH290_04780 1077058 .. 1077081 -   -16  -3.59882   AATCACAAGAACCAA          GCGGGCG-GCG ATA CGCGCGCCCGC          CTGTTCGATGGCCGG  91 51
 JH290_04760 1073504 .. 1073518 -  -5.6  -3.64703   TGGCTGCGATGCAAA               CGCAGC CGA GCCGCA               GACTTACATCCCCAT  57 29
 JH290_04730 NONE
 JH290_04725 NONE
 JH290_04720 1066108 .. 1066126 -    -3  -3.24329   TAGGGGCAATGAAGA             GTCCCC GCGGAAG GGGGGC             GAGGTTCATCGCCAT  44 73
        lptD NONE
 JH290_04710 NONE
        pdxA 1061070 .. 1061091 - -10.1   -3.0264   AAATCGCCTTGAACA           TGCCGGCGA TGCC TCGCCTGCA            AACGCGATGACCCTC  62 186
        rsmA NONE
        apaG NONE
 JH290_04690 1058137 .. 1058147 -  -4.6  -3.07113   GACGAGGCGATCGAA                 CGCG CGG CGCA                 GGAAGGTGCGCAGGA  45 299
 JH290_04650 1052181 .. 1052191 -  -6.8  -3.68244   ATGAGTAACTCGAAA                 GTGC GAC GCAC                 GAAGTAAATGCAGCG  62 155
 JH290_04630 NONE
 JH290_04625 1045766 .. 1045787 - -15.1  -2.63164   TCAGAGGCAATGAAG           GGCCGCCGG CATG CCGGCGACC            AGACACCTCACTCTG  77 149
 JH290_04620 1044823 .. 1044853 -  -3.2  -3.66874   GGAAGGGGAGGGAAA      CGGCGTG-CGTGC AGGTCA GAACGGCACGTCG       CCTTCGATGGTGGTG  51 10
 JH290_04615 NONE
 JH290_04610 NONE
 JH290_04605 1041981 .. 1041992 -  -2.2  -2.61548   CGGCAGCATAAGCCA                GCCT CGTT AAGC                 GCACGCGACCATGCC  38 61
 JH290_04600 1041166 .. 1041196 -  -8.1  -3.68222   CTTTAACCTCAAGAA       CGCCGCGACCAGG ATCAG CCCGAACGCGGCC       CTGTAATTTCACTGC  69 415
 JH290_04570 1033436 .. 1033446 -  -6.8  -2.79209   GAATGACTAAGATGA                 CACG TGG CGTG                 CAGTGATTAGACCGG  49 64
 JH290_04565 1032396 .. 1032425 - -22.3  -2.52543   AGCGCCCTCAACGCA       GAAGGCGACCGCA TCGC TGCGGTCGCCTTC        GTCGTCGCGTAAACC 100 48
        dusB 1030783 .. 1030808 -  -9.7  -3.54424   CTGCATCTGCGGAAA         CGTGACGTGCGC TGC GCGCA-GTCTCG         GCGCGGCGACGGCAA  68 56
 JH290_04550 1028087 .. 1028118 - -17.4  -4.08767   TCCATGCCGCCAAAA      CGCAAATGGACCGC ATCA GCGGCCCATTTGCA       TTACCAAGCACGCTC 100 58
 JH290_04500 1009762 .. 1009781 - -16.4  -5.63517   TCCTCAAACAAAAAA            CGGGCGCC TTGC GGCGCCCG             TTTTTGTCTACATGG 100 59
 JH290_04495 1009238 .. 1009250 -  -7.7  -2.69151   GCCGCTCAGAGATCA                CTCAG AAT CTGAG                TGCGTCGCTGGGTGT  52 3
 JH290_04490 NONE
 JH290_04475 1006999 .. 1007023 - -17.1  -3.53012   CCCCTGTTCCGGAAA          GCGCGCCCCAC GGC GTGCGGCGCGC          GGTGATGCTAAGCGC  93 305
 JH290_04470 1005361 .. 1005399 - -21.8  -2.52464   CGGTTGCCGAACGCA   TCGACGCCTTCATGCGGG CTG CCCCCATGAAGGCGTCGG   TCTTGCTACTCAGCG 100 115
 JH290_04465 1004397 .. 1004409 -  -4.8  -3.64599   GCACGACAGTGCAAA                CCAC CGAGC GTGG                CGAGCAGCATCCAGC  55 471
 JH290_04455 1004156 .. 1004170 -  -3.5  -3.28791   ACGCCGGCGGCACAA               TGAGC AACAG GCCCA               GGACATGCAGTCACG  46 36
 JH290_04450 1002915 .. 1002955 -  -2.4  -3.53012   TTCGCGCTGCGCAAA GCCACGTTGCACACACCGA GTAA TCGGCAGGCGCCGC-TGGC  GGCCACGCTTACCTT  48 465
 JH290_04440 1001548 .. 1001573 -  -8.3  -3.14344   GACGGCGCGGAGGAA         CCGGAATGTAC GTGG GTACATGCCGA          TTCCGAGCACCGGCC  58 82
 JH290_04435 1001484 .. 1001494 -  -3.2  -3.16039   AATCACCCGCAGCAA                 CACT TAG AGCG                 GCTAACAAAACGTAG  44 25
 JH290_04420  997899 ..  997912 -  -3.8  -3.21276   CGTGCGGTCATAATA               TCGC TTCATC GCGA                TGAATGCATATTTGG  47 76
        metF  996878 ..  996891 -  -2.3  -3.42574   GCAACGGCAGCAGAA               GGCGA GGCA TCGGC                GCAGCGTAACGGTGC  47 171
 JH290_04410  995864 ..  995877 -  -2.3   -3.1552   CTGCAGCGACCAAGA               CCTGC ATCG GCAGC                GGGTGGAGACACGCC  42 433
 JH290_04380  988994 ..  989007 -  -2.3  -3.62046   CCACGCGCTCAACAA               CAAGC TGGT GCGTG                CGCTGCTGGCGGACC  48 304
 JH290_04300  970361 ..  970396 -  -3.2  -3.14881   GAAGTGTCGTAGTAA    CG-GCTCATGATTGGCA TCC CGTCATTCATGCGCACG    CTATGCGCATGAATG  44 48
 JH290_04295 NONE
 JH290_04290  969595 ..  969607 -  -4.7  -4.36914   GTTGGCGGTACAAAA                CGCGG ATC CCGCT                CCGGGCATGCCAGAA  68 221
 JH290_04270 NONE
 JH290_04265 NONE
 JH290_04260 NONE
 JH290_04255  963190 ..  963207 - -12.7  -3.91897   GGTTTTATCGAGAAA             GCGCTCG CGCC CGAGCGC              GCTCCTACCTGGGGC  83 318
 JH290_04190  946878 ..  946895 - -14.1  -5.24531   ACGCCGCATAAAAAA             GGCCCCG CATG CGGGGCC              TTTTTTATCTTGAGC 100 49
        ettA  940701 ..  940719 - -13.8  -4.48987   CGCGCATAAGGAAAA             GGGCGCCC TCA AGGCGCCC             TTTTTTCATCCAGCC 100 77
 JH290_04145 NONE
 JH290_04140  936559 ..  936582 - -18.2  -3.34895   TGGAGCGGCAACGAA          GAACGGCGCC TTGC GGCGCCGTTC           CGGTCACACCGTGAC  93 60
 JH290_04090  926218 ..  926235 -  -5.5  -3.53511   AGAAAGGATGAAAGA             CGCTCAGC GCA GCCG-GCG             CGCACGCGCGTGCAG  55 11
 JH290_04085  923902 ..  923928 -  -5.7  -3.28924   GATTGCTGCCGATAA        GCCCCACGCGCC GGAT GGTGCG-GGTGC         CGTCATGGCGCTGCG  52 118
 JH290_04080  923247 ..  923257 -  -6.8  -3.86822   GAATGCGGCCACAAA                 CCTG TTT CAGG                 TCACTGTGCGTTTGC  65 26
 JH290_04075  922222 ..  922250 -  -5.9  -4.47551   ACCGAATGCATAAAA        GCCACTGACCAGA ACG TCTTTGCAGTGGC        GAGACAGGCGCAGCG  74 201
 JH290_03980  892033 ..  892044 -  -3.6  -3.05596   CAGGCGCTGATTGAA                CGGC CGTC GCCA                 GATTTCTAAAGGTTG  43 174
 JH290_03960  887944 ..  887955 -    -3  -2.71712   GGCGGTGCCTGAAAG                GAAA GGGC TTTC                 ACGATTCCCTATTCC  40 47
 JH290_03955 NONE
 JH290_03950 NONE
 JH290_03945 NONE
 JH290_03940  882457 ..  882480 - -19.6  -3.76402   AGTGCATGCATCAAA          CGCCTGCGCC ATGT GGCGCAGGCG           TCGTGCTTCAGAGCT 100 33
 JH290_03910  877708 ..  877730 -  -3.2  -3.38314   TGGAACTGGGAAAGA           CGCATCGGGC TTC GCTTGAGGCG           GAAAGCCGATAGTTT  46 121
 JH290_03905  875958 ..  875979 - -10.9  -4.02736   AACCCATATGACAAA           TGCGCCGAA TTAC TTCGGCACA            GTGTGTTCATCCAGC  82 64
 JH290_03900  875238 ..  875254 - -15.1   -5.4505   GCGCCCAATAAAAAA              CGCCGGC AGT GCCGGCG              TTTTTTATTTGCCTT 100 44
 JH290_03890  872595 ..  872619 -  -6.4  -2.62616   GGATTGGTCACAGCA         GGCCTCT-CGC GAGC GCGGAGACGCC          CGTGCATGTGCTTCG  48 79
 JH290_03885 NONE
 JH290_03880 NONE
 JH290_03875  870043 ..  870055 -  -4.7  -2.66964   TCATGCAGCAGATCA                GCCGC TTT GCGGT                AGCCCCAGGCGGGCG  43 160
 JH290_03860 NONE
 JH290_03855  864720 ..  864732 -  -3.3  -3.55801   ATCAATGCCGGCAAA                CAGAC CGT GACTG                CACGCGCGGGTGCCA  49 471
 JH290_03840  862245 ..  862258 -  -2.3  -2.91452   ATGATCGGAAGGACA               TCGCT CATG AGCGG                GGGAAACTCCAGTGC  40 65
 JH290_03835  860788 ..  860817 - -22.3  -4.13282   ATGAGAGCCGCAAAA       GCAAACAGCCGGG AATC CCCGGCTGTTTGC        TTTTGTGTTGCATAA 100 57
 JH290_03810 NONE
 JH290_03805  855302 ..  855326 -   -10  -4.63932   GATCCTTCAAGAAAA          CCGCGTAGTC GGGAA GAGTACGCGG          TGTGCTTGCCCCGGG  95 42
 JH290_03795 NONE
 JH290_03790 NONE
 JH290_03785 NONE
 JH290_03780  851409 ..  851444 -  -8.2  -4.56133   GTGTAAGAAGGAAAA    TGCGC-TGTGCCATCAG GTG CTGCAGGCACGTGCGCA    GTGGGGCTAAATCCT  86 59
 JH290_03775  848973 ..  849007 - -21.6   -3.2794   GGGCATTGAGAGCAA     TCGAGCTTCGGCTGGA AAA TTCAGCCGAAGCTCGA     TTAGTGCATGGTGGC 100 149
 JH290_03700  831330 ..  831352 -  -2.7  -3.59315   GTAACTATTCTCAAA          GCAACCAGCA GACT TTCTGG-TGC           GGTGTTCTCGCCGAT  49 243
 JH290_03685  827538 ..  827560 - -19.2  -2.62184   GTGTGGCTGACAGGA           CAAGGGCCGC ATG GCGGCCCTTG           TCGTTACCGTCAGTC  87 48
        queD  827073 ..  827092 - -12.1    -4.208   GCTCAAAACGAGAAA            GGCCGCC TCGGAG GGCGGCC             TTCGGTCACCATTTG  86 47
 JH290_03675  826509 ..  826536 - -12.8  -5.60689   CCAGACAATAAAAAA        GCCCGACAGA GGGAGGGA TCTGTCGGGC         CGGATTGCATGGGGG 100 78
 JH290_03665 NONE
 JH290_03660  824478 ..  824524 -  -8.7  -3.01712   GCCGGTTCGGCAACA CCCTCAGTCCCAG-CCTCATAGC GGC GCTTCGAGGACTGGG-CCACGGG CAAACGTTAAGCGCT  57 119
        fabA NONE
        fabB  820242 ..  820252 -  -6.8  -3.71848   TTGCGGGACGAATAA                 GGTG CTG CACC                 TGCGCTTTCGCGCAG  62 246
 JH290_03625  815891 ..  815905 -  -7.1  -3.32914   ATCGAATGACATGAA               GCCTC CAGGC GAGGC               CCGCAGGGTGCAGGC  55 105
 JH290_03620 NONE
 JH290_03615  812515 ..  812531 -  -4.4  -3.87583   AAAGCCAAAGCCAAA             GCCAAGC AGAG GCT-GGC              CATGAGGGCGACAGA  58 110
        gloA  811589 ..  811623 - -15.1  -3.47573   GCAGCGACAGGACAA    CCGCCGGCA-AAACGC CTGC GCGCTTATGCCAGCGG     CGTGTTCGAGATGAT  85 14
 JH290_03605 NONE
 JH290_03600  808474 ..  808502 - -12.4  -4.25104   CCGCTCTTAGCAAAA        TGGGCGCAAGCC TATTC GGCCCACGCCCA        TTCTGTTTTGCACAA  91 56
 JH290_03575 NONE
 JH290_03570 NONE
 JH290_03565 NONE
 JH290_03560  799204 ..  799221 -  -2.6  -3.09635   ACTGCGATGAGGGAA             CAGGCG AGAGGG CGCATG              GGGATCCTATCCATC  41 144
 JH290_03555  798625 ..  798675 - -16.9  -2.80291   AATGATCGCAGCATA CGGCGCCAGCCGGCGTTGCCGC-AT GCC ATGGCGGCAT-GTCGGCTGGGGCCG CAGGGCAGGGCATCC  84 100
 JH290_03550 NONE
 JH290_03545  795753 ..  795763 -  -3.2  -4.28994   GAGCAGCTATCAAAA                 CTAC TGC GCAG                 CCGTCAGGCGGGCGC  64 140
 JH290_03525  792500 ..  792519 -   -10  -2.52464   CGTTCCCTCAAGCGA            GACGTCAC TAAG GCGACGTC             CCCTTAGGAGGGGGA  59 165
 JH290_03470  782699 ..  782731 -   -17  -4.50358   ATGCAAACACCAAAA      CCACAACGCCCCGC ACAAG GCGGGGCGTTGCGT      CACACGGTGCAGCGC 100 44
 JH290_03435  773952 ..  773981 - -19.5  -3.60098   ATCCGTGAGCGCAAA       GAAAAAACGGGCC CGAA GGCCCGTTTTTTC        ATACACACGCGTGTT 100 69
 JH290_03405 NONE
 JH290_03400  767168 ..  767190 -  -7.6  -3.18264   GTGCGCATGCACGAA           CCGCAGCAGC CCA ACCGCCACGG           CCAGCGTCCGCAGGT  54 436
 JH290_03385  762363 ..  762380 -  -5.5  -2.82775   TCTAGATAAAACGCA             CCGCATC AGAC GATGCCG              CCTCAGACGTACTGC  48 28
 JH290_03365  759257 ..  759271 - -12.8  -6.22802   CGGCACAAAAAAAAA               CCGGGC AGT GCCCGG               TTTTTTGCTGCGCGT 100 52
 JH290_03335  753603 ..  753632 - -13.6    -2.867   ATCAACACGACCACA       CGACAACGGCGC TCTGAG GCGCCGTTGTCT        GTTCCAGCATGGCGT  74 67
 JH290_03320  750045 ..  750075 -   -14  -3.19602   TGCTGGACACCAAGA       CCGGCCGCTACTAC GAC GCAGTACCAGCCGG       CGAAGGCATGCGCGT  73 470
        msrB NONE
 JH290_03305 NONE
        motA NONE
        motB  746199 ..  746230 -  -2.1  -3.53444   CCAGGCGGTGCCAAA      GCCCACCCGCCAG CGACGC CTGGCGCGTCAGT       TCGGCTGTGCCGACT  47 21
 JH290_03290 NONE
 JH290_03285  744690 ..  744705 -  -4.6  -3.58726   CGCGCTCATACAGAA              GCGCAG GTCA CTGCGG               TCTGGATGGTTCTGC  55 486
 JH290_03275  743063 ..  743102 -  -5.8  -3.84712   CAAGTCCAGATCAAA CGCTGAGTGGGTCGAGGGC GCGGT GCCCTC-AC-CGCTC-GCG GGACACGCCGTGAAC  62 335
 JH290_03255  738350 ..  738366 - -10.8  -3.07962   CCGTACACTTCAATA              CGCCGG CCACT CCGGCG              CGGATGCATCACGCC  66 34
 JH290_03250  737402 ..  737423 - -15.9  -5.40072   GTCGGTGCAAAAAAA           TGCGCGTGC AAAC GCACGCGCA            CGGTGTCGCGGTTCG 100 339
 JH290_03230  732048 ..  732063 - -10.4  -3.06133   GAAGCGCCCATGGAA              GCACGC GCCA GCGTGC               AGATTAATGACCGCG  62 29
 JH290_03225  731290 ..  731310 -  -9.7   -3.7941   CACCTTGCACAACAA            CTGCAAACG CTC CGCCTGCAG            GCCGGCTACCGCGCG  71 159
 JH290_03220  729841 ..  729868 -    -7  -2.70932   TCGGTGGCCTAAGGA        CCCGCGCA GTGTGCAGGGGA TGCGCGGG         CCATGGCGTGAGCTG  49 76
 JH290_03215  729032 ..  729061 -  -2.8  -3.12668   CTCGAAACCGGAACA       GACTTCG-CAGTG TAGGT CTCTGGCGCAGTC       GCGTCCTGGCTCTGG  44 83
 JH290_03210  726504 ..  726517 -  -3.7  -3.28791   AGGCGTTCTCGATAA               CGCCC CATC GCGCG                TGAGCGCGCTCCTAC  48 401
 JH290_03200  724035 ..  724056 - -15.9  -4.37711   TGATGAAACGCAAAA           GGCCAGTGC ACAA GCACTGGCC            TTTTGTTTTGAAGCG 100 112
 JH290_03175  718143 ..  718156 -  -4.5  -4.28994   GAGCAGCGATCAAAA               CGACT GCAC AGCCG                CCAGGCGGGCGCGGC  66 137
 JH290_03160 NONE
 JH290_03155 NONE
 JH290_03150  715871 ..  715896 -   -19  -3.78775   GGGGTCAGCAGGAAA         CGCGGGGCGG GCAGGG CCGCCCCGCG          CGGAACATCAGGCCG 100 33
 JH290_03145  714817 ..  714842 - -19.7  -4.72272   TGCGGTGAGCAAAAA         CGCCCGGGCCG CGAA CGGCCCGGGCA          GTCATGCGCGGTTGC 100 50
 JH290_03140  714361 ..  714377 - -15.1   -3.7918   AGAGCACATGAAGAA              GGGGCGC GCT GCGCCCC              TTGGTGTTTCAGCGA  90 95
 JH290_03125  708817 ..  708835 -  -4.5  -4.09108   TGCAACCCACAGAAA            CCGCGCCG GATA CGGC-CGA             TCAGTGATGTTCGAC  61 26
 JH290_03110  706427 ..  706454 -  -9.1  -3.02511   GGCACTGCGCGAACA        GGGTCCGCGCCC TGGGC GGGCGCG-ACCG        TGATCGGCTGCACAG  60 82
 JH290_03105 NONE
        cydB  703761 ..  703779 - -13.8  -4.08557   CGGTGCAAATAACAA             CGCCCGCA TCG CGCGGGCG             TTTTTCATGTCGCGG  90 65
 JH290_03085  701681 ..  701700 - -13.6  -5.27938   ATGCGCAAACAAAAA            CGCCACTC GAGC GAGTGGCG             TTGTAGAACGCGAAA 100 54
        galE NONE
 JH290_03075 NONE
         glf  697750 ..  697784 - -13.5  -3.66178   CGTCGCAACGTCAAA     GCAGTGGCCGGCAGC ACATG GCTGCCGGCTAGCGC     GTTCATGCCTCAGGC  81 35
 JH290_03065 NONE
 JH290_03060  694744 ..  694757 -  -2.3  -3.71552   AGCTCAGCAACACAA               GCCTG CGCG CAGCC                ATACCGCCCCTCACG  52 36
 JH290_03045  691685 ..  691721 - -22.4  -3.19157   CATCAAGTGCAGGAA   CGACAACGGCGCGGCCC TCAG GGACCGCGCCGTTG-CG    CTTTCTGCAGGATGC 100 50
 JH290_03030 NONE
 JH290_03025  689849 ..  689879 -  -7.5  -4.28994   GAGCAGCTATCAAAA      CGACTGCGCAGCCGC GAG GCGG--GCGCGGCCG      GTGCTCGGAATCGGC  76 488
 JH290_03000 NONE
 JH290_02995 NONE
 JH290_02990 NONE
 JH290_02985 NONE
 JH290_02980  680544 ..  680561 -  -5.5  -3.19602   CGGTCGACAGCAACA             CCGGC TTCGTGTT GCCGG              CCTACACGGTGTGGC  49 375
 JH290_02955  672775 ..  672796 -  -3.7  -3.54424   GCGTATCCGTTGAAA           GCGACGT GTCGGGCG ACGTCAC            GGCCAGTGACGTGCG  53 134
 JH290_02945  671224 ..  671244 - -15.4  -2.89564   CGCCGAGGCGATACA            GGGGCCGC CGTAC GCGGCCCC            TGCATTTGTGATCAC  79 37
 JH290_02920  666530 ..  666548 -  -5.3  -3.28712   GGTGTTGGTGGACAA            GCGCGATC GCGA GATC-CGC             ATCGTGGGCCTGTGC  51 238
 JH290_02910  665030 ..  665047 -  -4.1  -3.62522   CAATGTGCTGAAGAA             CCA-CACG CGG CGCGCTGG             CAATCTCGCTGCCAG  54 514
 JH290_02845  651895 ..  651905 -  -5.4  -3.19668   CAGTATGGAAGTCAA                 TCCA CCG TGGA                 CATGTGACGAGTGCG  49 495
 JH290_02830  649695 ..  649743 -  -8.9  -3.31144   CCGCCACTGGTAGAA GCTGGCCG-GGCTGAAACCGTGC TGGCG GCACAG-CTCAGCCACCGCCATC CCGGCATCCGCCTGC  60 191
 JH290_02825  648148 ..  648193 - -24.9   -2.7185   ACCAGTTTCTAACCA GCGCCCCACGCTTAGCCATCC TGCT GAATGGCTAAACGTGGGGCGT TTTTTTGCCCGCAGG 100 505
 JH290_02810  645583 ..  645598 -  -4.8   -4.1899   TGAGCGGACGGAAAA              TTTAGT CATG ACTAAA               AATGACCGATCAACA  65 132
 JH290_02775  639651 ..  639661 -  -5.4  -3.20723   CTCTTACCAATTCAA                 TCCA GCT TGGA                 TGAAGCTCAAGCGCG  49 353
 JH290_02745  634342 ..  634392 -  -7.5  -2.71791   ATCTGTCTTTGAAAT GCGACGCTCGCGGCCAAGCGCTGGC TCA GCACGCGCTTGGC-A-GAGCGTTTC TCGCAAGCCCGCCGC  52 44
        ribA  632335 ..  632363 -   -16  -2.78384   CGGTCCGCCAGCATA       GCCGGGCGCCGCG CGGG CGCG-CACCCGGC        AGCCGGCTTACTGGG  81 33
 JH290_02730 NONE
 JH290_02725  629922 ..  629945 -  -4.4  -3.96148   GTGGTGCAGCACAAA          CCGGTGGTGA CCTT CCGCAACCGG           GTGCCGCAGCCGCAC  61 336
 JH290_02715  627865 ..  627879 -  -5.6  -3.15544   TTTCAGCGCTACGAA               GTCGGC GAC GCCGAT               TCGTCTGCCGGTGCG  49 490
 JH290_02685  620710 ..  620738 - -18.2  -3.55563   AGCGTAGGCCGCAAA       CGACGACGGCGCC CTCG GGCGCCGTCG-CG        TTGGTAGGTCGGATT 100 48
        dprA NONE
 JH290_02675 NONE
 JH290_02670  618247 ..  618263 -  -3.5  -4.07568   TCCCCTTGGTCAAAA              CCGTTGC CTA GCCGCGG              CAATCCTGCGGCAGA  58 16
 JH290_02665  617037 ..  617060 -  -9.6  -3.96148   TTCTCTTATTAGAAA          GATCACGGCGA GCG CCGCCGTG-TC          AAGCGGCCAGCGCCG  74 47
 JH290_02660 NONE
 JH290_02655  613771 ..  613782 -  -5.8  -3.53012   GGGCCCGCGCTGAAA                GCGT AACC ACGC                 GCCCAGGCGGCGGTT  55 77
 JH290_02650 NONE
 JH290_02645  611922 ..  611936 -  -5.6  -3.76048   CTTCAAGCAATACAA               CGACCG CTA CGGCCA               CCCGCAGGGCGACCA  60 419
 JH290_02630  609760 ..  609778 - -13.1  -3.42699   AGGCAGTCACGACAA             CGCCGGC TTCGC GCCGGCG             TTGTCCTTTTCAGCG  76 42
 JH290_02605  601484 ..  601506 -  -4.8  -3.11702   GGACGTAATAAACGA           CCAATGCCCT TGC AACGCACTGG           ATGCTGCGACACATG  48 177
 JH290_02585  597807 ..  597858 - -11.5  -3.33492   GTAGCCACGGCACAA CGGTCGACAGCGGGCGGCACAGCA TCGCG CACCGC-CCGCCGGCTGTCATCCG TCCTTGCTGGGCGGT  69 19
 JH290_02580  597019 ..  597038 - -16.4  -4.19817   GCCAGTGATGCAAAA            CGGCCCGG TCTT CCGGGCCG             TTTCGCATTGTGAGC 100 172
        trxA  590338 ..  590368 - -11.9  -4.08692   TAACTGCCGGCAAAA      CG-CAGGGCGCCCA TGGC TGGACGCCCTGTCA       CTCAGGCGGCCGCGC  83 27
         rho  588237 ..  588253 - -15.1  -5.60993   CGGCCCACAAAAAAA              GCCCCGC AAT GCGGGGC              TTTTTCGTAACACAC 100 54
 JH290_02520  583751 ..  583784 -  -4.5  -4.02817   CCTGGACAACAACAA     GTCGCCG-GCGCGC AAGGTCG GCGAGCTCGACAAC     CGCGGCAGCCATTTC  61 364
 JH290_02490  576535 ..  576557 -  -8.3     -2.55   GAAGACGTCAATCGA           TGCCGGCGC GCAAT GCGCCGACG           CACACCGGCGACGGA  53 65
 JH290_02485  573181 ..  573205 -  -4.9  -3.59315   GCAAGCAGGGCCAAA         GCCACGCCCG AATGCG CGTGCG-GGC          AGACGAAGCCGCCGG  55 75
 JH290_02480  569859 ..  569869 -  -3.2  -4.28994   GAGCAGCTATCAAAA                 CTAC TGC GCAG                 CCGCCGGGCGGGCGC  64 140
 JH290_02470 NONE
 JH290_02465  568345 ..  568362 - -10.5  -3.14132   GCGTGTCGCCAGCAA             GACGCGC CGCA GCGCGCC              TGCATGGCTCAGCCC  64 425
 JH290_02460  567028 ..  567044 -  -5.7   -3.6943   CACGTAAAACGACAA              CGCGCGC GTT ACGCGGG              TAATCCGGTGCAGGC  60 17
 JH290_02390 NONE
 JH290_02385  553194 ..  553245 -  -7.8  -3.18582   TACTGTACCCAGCAA CGCGCGCGCCTGCGCATCGGTGGAT GCA ACGCAGCGCTGCGC-GGCATGTGCG CCGATCAGGGCAACA  56 30
 JH290_02380 NONE
 JH290_02375 NONE
 JH290_02370 NONE
 JH290_02365  549901 ..  549919 - -11.7  -3.66178   GCCTTGAACGCGAAA             CGCCACC TCAAC GGTGGCG             TTCTGCGTTCTTGGC  75 14
 JH290_02355  547988 ..  548005 - -12.7  -5.60993   TGTCGCAGAAAAAAA             GCGCCGA TCGC TCGGCGC              TTCGCCTCGCATCAT 100 104
        rpsU  543237 ..  543261 - -13.6  -5.09762   AGGCCAATACAAAAA         GCCGGCGACGC TTGC GCGT-GCCGGC          TCTTGGGTTCCACTC 100 91
 JH290_02330  542156 ..  542177 -  -2.9  -3.83561   CGCGTGCAAAAAAAT           CGGTGCGAGC CTT GC-CACACTG           CAGCGCAGTGTCGGA  56 503
 JH290_02325 NONE
 JH290_02320  539050 ..  539060 -  -6.8  -3.41051   GTAGCGGCATCACAA                 CGCT GCG AGCG                 CCTTGAGCAACTCGC  57 9
 JH290_02315  538543 ..  538569 -  -2.9  -3.06696   TGCCGGCGCAACAGA        TGC-GTCACTGC GGCG GCGGTGGCTGCA         GGCGTTCGCGCACCG  43 3
 JH290_02310  537259 ..  537307 -  -4.6  -4.10161   CACCAGTGGGCAAAA GGATCGACCACTCCG-GCGAACG GCCAGG CGTCCGCGCCGAGAGG-CG-TCC TGAGCGTTGTAGCGC  63 184
 JH290_02305  535164 ..  535205 -  -2.7  -3.21924   CGACCTCGCAGAACA TCGTGATCGGCGGGCTGGC CGGT GCCACGCCGCCGATGCTGG  GCTGGGCGGCAGTGA  46 479
 JH290_02280  531524 ..  531536 -  -6.2  -3.67296   CATCACGCATTGAAA                GGCG GCCGA CGCC                GCGCGCTGTTGCTGT  59 445
        putA  523367 ..  523392 - -17.7  -4.07568   TCCGTTGCGCCAAAA         GAAAACCCCGC TTCT GCGGGGTTTTC          TTGTTTCAAGCGCTC 100 243
 JH290_02210  513542 ..  513572 - -14.7  -3.14132   GCGCCTGGGCAGCAA      CGCTCGCGG-GAGC TAAA GCGCGCCGCGAGCG       CTGATCAATCGGCCA  80 57
 JH290_02205  512016 ..  512033 -  -6.9  -3.01712   TGCCGGCGGGCAACA             CCCCCTG ATAG CAGGCGG              ACGCCGCTTTAACTA  51 259
        pyrE NONE
 JH290_02180  507860 ..  507876 -    -5  -3.57144   CGCCGGATCGGGAAA              TGCGCC CCGAC GGCGCT              GCGCCACCCCTGCGG  55 57
 JH290_02175 NONE
 JH290_02170 NONE
 JH290_02165 NONE
 JH290_02160 NONE
 JH290_02155 NONE
 JH290_02150 NONE
 JH290_02145  502640 ..  502665 -  -8.1  -3.14132   CCTGCGTGGCAGCAA         CGTCGCCGCGC ATCA GCGCGGCACCC          ACGCGCGATTAGGCA  58 132
 JH290_02140  501762 ..  501776 -  -5.6  -3.05384   CTGTTCCGCAGCGAA               CTGCAG GCG CTGCTG               CCGGATCACCCGCTC  49 350
        radC NONE
 JH290_02115 NONE
 JH290_02110 NONE
 JH290_02105 NONE
 JH290_02100  492724 ..  492740 - -15.1  -4.32951   ACGCGAATGAAGAAA              GCCGCGC AAT GCGCGGC              CTTCTGGCTTCAGCA 100 211
 JH290_02080  484680 ..  484710 -  -9.1   -3.6682   CGCGATGCATGCAAA      CGGTCG-CGC-CATG CGC CATGCGCATCGACCG      ATTAAAGTGACCAAG  68 193
        speE  481541 ..  481570 -  -9.2  -2.62184   TCTCGTTTCACACGA       CGCCGGCAAGCG CGTACT CCATTGCCGGCG        CTTATGACGCTTACT  56 36
 JH290_02060  479362 ..  479385 -  -2.4  -3.05963   ATCGTCAGCGGAAGA          CCGCAGC-AGC CCG ACTTACTACGG          GCACGGACTTATCGC  41 133
 JH290_02050 NONE
 JH290_02045  476773 ..  476797 -  -7.8  -3.29263   ACAGCCTGGCGACAA         GTCCTGCGGTG ACAC CACCGC-GGCC          ACACGTCTTTCCTTC  58 101
 JH290_02040  475819 ..  475839 -  -5.3  -4.22375   ACCCAACAGAAAGAA            CGCGTCGGC GGC ACCGATGCA            GTGCCGATCTTCAAG  69 174
 JH290_02030  473716 ..  473734 -  -8.8  -2.57244   CGAGGCACGAACCGA             TGCTTGCG GAG CGCATGCA             AGTGCATGAGACGCA  53 151
        fabR  470064 ..  470076 -  -4.7  -4.57073   CAGGCGTGCGAAAAA                CGCGC TGG GCGCT                GTCTCAACGTATCCC  74 230
 JH290_02005  469219 ..  469233 -  -7.2  -5.47218   CTTTATGCAAAAAAA               TAATCG AAC CGATTA               TCTCCGGGCATCATC 100 36
 JH290_02000 NONE
 JH290_01995  465742 ..  465759 - -14.1   -4.8622   GCGCGCAATGAAAAA             GGGCCGC TTGC GCGGCCC              TTGCTCATCCCTTGA 100 30
 JH290_01990  464692 ..  464720 - -23.3   -4.1964   CGCAAGACTTGAAAA        CAACAACGGGCCC ACT GGGCCCGTTGTTG        TTAGCCATCCGCGTG 100 72
 JH290_01965 NONE
 JH290_01960  461207 ..  461225 -   -16  -3.27525   CGGCTCCAAATGCAA             GGAGCCGC TGA GCGGCTCC             GGTGTCGCATCGATC  88 39
 JH290_01955  460476 ..  460496 - -15.4  -3.84451   CGCCTGAAACGCAAA            CGCGCCGG ACAAG CCGGCGCG            TCGTGATGCAGGTAC  91 52
 JH290_01950  459403 ..  459432 - -11.3  -3.14132   GCCCCTGCGCAGTAA       CGCGCGACGCCCA CTGC TGGGTGCCGCGTG        TGGCCGCGTACGCGC  67 43
 JH290_01935 NONE
 JH290_01930 NONE
 JH290_01925  455002 ..  455039 -  -7.7  -3.52147   GAAGGAGACAACGAA   TGGATCAGCAGCACCAGC GCG GCTGGCAC-GCGGATTCA   ATGCAGCAGCAACCG  60 23
 JH290_01920  454101 ..  454129 - -17.4  -3.08211   ACGCGCTGAAAACCA        CGGGCCGGCGCT GCAGT AGCGCCGGCCTG        TTTCATTGTCAGTGG  88 203
 JH290_01910  451638 ..  451649 -  -3.6  -3.14931   TGCACGCCGGATCAA                CGCA TGAG CGCG                 TCGTACTGGGCGTTT  44 10
 JH290_01905 NONE
 JH290_01900 NONE
 JH290_01895  450177 ..  450189 -  -3.3  -3.23274   TGCGCGAGAATTCAA                TGCTC GGA GAGCT                CGGTAGCGGCCTCGG  44 9
 JH290_01890  448871 ..  448881 -  -3.2  -3.57144   GCGCTGATTTGGAAA                 CTCA TCG CGAG                 ATTGTAATGCCGGGA  51 120
 JH290_01885  448134 ..  448156 -  -2.5  -3.91488   AAGCTGCGGAAAGAA           GGCGCCGGG TTTAG CCGGGCACG           CACACGCCAGCGTGC  54 13
 JH290_01880  446650 ..  446667 -  -7.7  -2.74523   TGAGTTTGAACATGA             TGCCTCG GGCG CAAGGCA              GCCCAGACAGTGCCA  52 71
 JH290_01875  445592 ..  445610 -  -8.1  -4.90381   CGGAAGATAAGAAAA            GC-GGCGC GCAA GCGCCTGC             AGAGCATGCGCTCGG  90 450
 JH290_01865 NONE
 JH290_01860  443373 ..  443419 -    -7  -4.67608   GAGGCCAAGACAAAA CGCCAGCGCTAGCCCCTCTCCC GTC GGGAGAGGGGTTGGGGAGAGGG TACGCGGCAAAGCCA  81 134
 JH290_01840  438751 ..  438781 -  -7.5   -4.2828   GTGCAGCTATCAAAA      CGACTGCGCAGCCGC CAG GCGG--GCGCGGCCG      GTGCTCGGAATCGGC  76 147
 JH290_01830 NONE
 JH290_01825 NONE
 JH290_01820  435094 ..  435106 -  -4.7  -3.09933   TGGCAATGCATCGAA                GGGCG AAG CGGCC                GGGCAGACTACGGCC  47 181
 JH290_01815 NONE
 JH290_01800  431461 ..  431476 -    -9  -2.71144   CACGCCGCCGAAGGA              TTGCGG CAGT CCGCAA               GCAATCCTGACCCTC  57 39
 JH290_01760  424401 ..  424429 -    -3  -3.87075   ACCAGCGTTGAGAAA        TGAGTGGGCGGA TGCCG TGCGCACACGCA        AGCACGAACAGTGCC  56 53
 JH290_01755  423947 ..  423970 - -19.6  -2.51133   CATCGAGGCAGCAAC          GCCTGCCGGC GGGC GCCGGCAGGC           CAATAGCAACGGCGC  90 70
 JH290_01750 NONE
 JH290_01745  422335 ..  422367 -  -3.4  -3.27774   GACTTCAAGGATGAA     GGACGCGTCGCCGCCA CCC TAGAGGCG--GCATCC     CCCGCGTGACGCCCT  46 114
 JH290_01740  420995 ..  421024 - -17.3  -3.25823   TTTTTCCTATATGAA       GAAGCCCGCC-AGA TAT TCTTGGCGGGCTTC       TTCATTTCTTGTGGC  91 445
 JH290_01700  416533 ..  416549 -  -6.5  -3.06492   GTAGCCAGCGCAACA              CCCACTG GAT CAGCGGA              ACATGCCCGGCAGGA  51 18
 JH290_01695  415412 ..  415428 -  -2.2  -4.07885   CACTTTCCGCGAAAA             CGGCAGC AAGG GC-ACCG              ATCATGGTCACGGCA  58 375
 JH290_01660  408069 ..  408085 -    -8  -3.57144   TTTCTGACGCGCAAA              CCCTTG CACGC CAAGGG              TTTGACATTTATCTG  62 402
 JH290_01635  405145 ..  405174 -  -9.1  -3.67597   GCTTCCATGCAAGAA       GCGAGCAGCCCGC TGGA GCGTGCGTCTCGC        AAGCGCACCGCATGT  68 78
 JH290_01610  400152 ..  400188 -    -8  -3.01712   CGCGCCTCCCCAACA   CGGTCAA-CGCAGCATC ACCT GACGCAGCGCTCGACCA    CACTCGGCCAACTCA  54 38
 JH290_01590  394865 ..  394880 -  -5.4  -3.85817   AGCGGCTGCTACAAA              CGTGGCG AGC CGCCA-G              CAACGCTACGAACCA  60 125
 JH290_01565  385247 ..  385303 - -12.2  -3.34344   CCATGCTTCAACGAA TCGCCGTGCGACGGCAAGCCCCATGGCG CAA CGCCGCAGGGCCGGCCG-CA-ACGGCCA TGTACGTCTCCCGAC  72 96
 JH290_01560 NONE
 JH290_01555 NONE
 JH290_01550 NONE
 JH290_01545  380600 ..  380629 - -19.5  -3.06183   CGGATGGCCAGCCAA       CAAAAAGCCCGCA TCGC TGCGGGCTTTTTG        TTGGGCGCCTGGTAT 100 174
        dmeF  374071 ..  374086 -  -8.2  -4.07568   TGCGCCCGCTGAAAA              GCGCGC TCAA GCGCAC               GTTGCACGGCGGTGG  73 86
 JH290_01500  371997 ..  372017 -  -6.7  -3.05384   TGCTGGCCGAGGCAA            TCGCCAGCC GGG GGCTGGAGG            TGGTGCTGCTGCAAG  51 426
 JH290_01490 NONE
 JH290_01485 NONE
 JH290_01480 NONE
        panE  367776 ..  367796 - -16.9  -2.59191   CCAGAGCGCTACAAC            CCTTCCCCC ATC GGGGGAAGG            TGCCCGCAGGGCGGA  83 94
 JH290_01470  366896 ..  366908 -  -4.8  -3.60627   CTACGCGACCTTAAA                CACC AACGA GGTG                CGGTGATGCCTTGCG  55 208
 JH290_01405  350273 ..  350302 - -12.1  -3.10894   AGCACGACGACGCAA       GCCGC-CGCGCGCG ATC CGCACGCGTGCAAC       GCGCTGATCTCCGCT  68 179
 JH290_01400  347832 ..  347845 -  -3.7  -5.01732   AAGGCTGCGAAAAAA               GTCGC CAAG GCGCC                TGCCAAGCGCAGCGC  81 445
 JH290_01370 NONE
 JH290_01365 NONE
 JH290_01360 NONE
 JH290_01355  335403 ..  335413 -  -6.8  -2.97925   AGGCGACAGGAGATA                 CAGG ATG CCTG                 CGTCGGAATTTTCGA  51 405
 JH290_01290 NONE
 JH290_01285  323448 ..  323462 -  -5.6  -3.93288   TGCCACGCAACGAAA               CCGGCA AGC TGCCGC               GCGATCTGGTGTTGG  63 115
 JH290_01275  318991 ..  319001 -  -8.2  -3.12351   CCGGTGCAGAGGCAA                 GCGC AAT GCGC                 CAGCGATCCGCGGGT  58 252
 JH290_01270 NONE
 JH290_01265  317084 ..  317123 -  -9.3  -3.09987   GGAAGATCGACCTAA CGCTGCGTCG-GACGCGGA CCCC TCCG-GTCACGGCGCAGCC  AGCATTCAACCTAGC  59 513
        hemF  302953 ..  302976 - -11.1  -3.22656   AACTCAATCGATCAA          CACAGCGTT TCATTC AACGCTGTG           TTTTTAATCGGCGCA  67 42
 JH290_01180  299289 ..  299311 - -19.2  -2.71712   TTCGTCGCCCGAAAT           CTGCGGGCCA GAT TGGCCCGCAG           CTGCTAAACCGTTTG  87 133
 JH290_01160  295826 ..  295856 -  -4.5  -3.57783   CCAGGACAACTACAA       CGTGCCGTCGCGC TTTCT GCGCGAGATCCCG       CGCGACCTGCTGCAT  52 466
 JH290_01135  288461 ..  288475 -  -5.6  -2.98942   ACGCCCTCAGACATA               GCGCAG GCC CTTCGC               GGCCAGCCGCTCGCG  49 2
 JH290_01130  287198 ..  287212 -    -7  -3.11634   TCTGATATGAGGGAA               CGTGCG CAT CGCGCG               GTTGCTTGCAGCCGC  53 217
 JH290_01125 NONE
 JH290_01100 NONE
 JH290_01070  271277 ..  271304 -  -2.5  -4.16842   TCCACCCGGAAGAAA        TCGCCTGGCTG ACGGCG CTGCCCGCCGA         GACGCAACAGCCGCT  62 245
 JH290_01060  270499 ..  270524 - -16.9   -3.9392   GGCCAGCTGAAACAA         CAACGCCCGGG CTTG CCCGGGCATTG          TGTTCACAGCCCTGC 100 48
 JH290_01005  256307 ..  256351 - -10.7  -3.29511   GCGATGCCGCCAGAA CAGGCCG--ACGCGCTGCTGC GTACG GCGGCGGCGCGTGGCGACCTG GCCGCGCAGCGCTAT  66 451
         acs NONE
 JH290_00965  246200 ..  246237 -  -4.1  -4.62069   TGGTGAGCTGAAAAA   GGTCGACCCGC-TGACCT TCC AGTTCACGCAGGCCAACT   TCGTGCCGATGCGCG  72 397
 JH290_00955 NONE
 JH290_00950  244177 ..  244196 - -16.4  -5.00616   CGTGCGTGCAAAAAA            GCGGGGCC ACGT GGCCCCGC             CTGGCGGCTTAGCCG 100 34
 JH290_00940 NONE
 JH290_00935 NONE
 JH290_00930  239251 ..  239272 -  -6.6  -2.58272   CAGATGAGGAATGGA           GCG-GCTAG CAAAC CTAGCGCGC           GTGCATCGGGTGGGT  48 143
 JH290_00925  238154 ..  238210 - -11.6  -3.53811   GTTAGCCGCTCTAAA TCAACTTCCTGAC-TCACTGCGCGTCG GTAT CGACGCGCTGCGACGCTTGGAAGTTCA ACGCCCTCGCACCCC  75 179
 JH290_00915  236412 ..  236464 -   -10  -4.11938   CAAACCAACGAGAAA CGGCTTCAGTCGCGATCAGGC TCAGCGAAAACT GCCTG-TCGCTATTGAAGCCG TTATTGCACCGCGCA  81 70
 JH290_00900  232669 ..  232691 -  -4.6  -2.78463   ATCGCGCCGAGTATA           GGCCCGCGTC CGC GGCGCGGTGC           ATCAGGTGCGTGCAG  44 71
 JH290_00895 NONE
 JH290_00890  229738 ..  229748 -  -6.8  -3.16564   CGCGCAGTGTACCAA                 CGTG CGC CACG                 GATCAGCGCGTTTTG  53 115
 JH290_00885  228889 ..  228921 -  -7.7  -3.14132   CTCGCGCGCGATGAA      GCGTTACCGAGAACG CCA CATCACCGATAACGC      CCCATCGCGCGCAAG  56 69
 JH290_00865  219343 ..  219382 -  -7.8  -2.55074   CGCAAGTTGAAGCTA  CATGATGTGCGGCGGACCC CAC GAG-CTGCCACGCATCACG  CCGTCACCGCACCTG  51 128
 JH290_00860  216894 ..  216923 - -22.3  -2.87132   GCTTGGCGCCACACA       CAACGACGCCACC CGAA GGTGGCGTCGTTG        TTTTGCTGTCACTGC 100 73
 JH290_00820  204157 ..  204181 -  -2.8  -3.57561   CGTTAACGGTGCAAA          CCCCAGCAAT CCGCT ATTCCCGAGG          TGGCAACACCGACAG  51 14
 JH290_00815 NONE
 JH290_00810  201781 ..  201798 -  -2.6  -3.48276   TCGGCGTCGAGAGAA             GCTAGC CTCCGC GCTCGC              CAGAATGGCTTCTGG  47 121
        hemH  197853 ..  197889 -  -2.7   -3.6502   CAGGTCGCAGTGAAA    CGGCTGCAACCTCACGC GCG GCGGGCCACTGCGGCCA    ACGCCTGCGCATGCG  49 0
 JH290_00780  196714 ..  196728 -  -8.5  -3.31157   CAATCATCACAGCAA               GCGGC GCGTT GCCGC               GCCATAGCGGCGGGT  60 292
        xylA  191488 ..  191501 -  -2.4  -4.56597   CTTGCGGCCGAAAAA               TTGC TCGCAC GCAA                GCGGCGCCCCAGCGC  67 431
 JH290_00750 NONE
 JH290_00745 NONE
 JH290_00740  185138 ..  185151 -  -5.9  -3.22774   TACAGCCAGCAGTAA               GGCAC GCAT GCGCC                TCACCAGTCCCACAT  51 26
 JH290_00735  183389 ..  183422 -  -6.6  -3.14051   CGAGCGCCAGCAACA     GGCCGCGCGCCA GGGCACGGTG CGGCACGCGGGC      GTGCGGGGCAGGGTG  53 52
 JH290_00730 NONE
 JH290_00725  179041 ..  179055 -  -2.8  -2.50779   ACGAGAACGCAATAG               GCACAA GTT TTGTGG               TTGACGCATGGATCA  39 151
 JH290_00720  177784 ..  177798 -  -5.6  -3.73224   CGATTGTGGATGAAA               GCGGCA ACT TGCTGC               GGATCGGCCAACAGC  57 98
 JH290_00705  176409 ..  176434 -  -6.8  -3.28712   CTTCGCTCGCTACAA         CGCGGCAC GTTGCAGGGA GCGCCGCG          CAAACTCAACGGACC  55 41
 JH290_00700  176067 ..  176089 -  -9.1   -3.2352   GAAAACCCAAGCCAA          GGCCCGC-GC CAAG GCTGCAGGCC           GTCCGTACCCCAACC  61 97
 JH290_00690  173618 ..  173634 -  -4.3   -4.1552   GACCTGGTCAACAAA              GACACGC CCG GCTTGCC              TGACGGCATGGCGGT  62 375
 JH290_00680  171626 ..  171647 -  -7.9  -4.37092   ATCGTCTGTATAAAA           CGAGGCGGC ATTT GCCGCTTCA            AAGAGGGCTCGTGCG  76 273
 JH290_00640  159713 ..  159741 -  -6.7  -3.53444   GGAGTGCTGCGGAAA       CG-CC-GCGGCGC GCAGT GCGCCACCGGTCG       CGGTTGGGAGGACCC  57 61
 JH290_00635 NONE
 JH290_00630  157050 ..  157070 -    -9  -3.22388   CACCCAAGCGAGCAA            TGCCCGTG TATGT CACGAGCA            AGCAAATGACCGGTT  61 77
 JH290_00625  156024 ..  156039 -  -2.5  -4.12188   CCACTATCCGGAAAA              CACCG CGTTTC CGATG               GATGTGACGGTGTAT  58 223
 JH290_00615 NONE
 JH290_00610 NONE
 JH290_00605  152098 ..  152115 -  -2.7  -3.68366   CTACTGCAAAAGTAA             GTACGCTC AAG GAGCAT-C             TCGAAGAACTGAAGT  53 351
 JH290_00590  150142 ..  150166 - -15.7  -4.18167   AAACAAGGACACAAA          GCCCCTCTCCC CCC GGGAGAGGGGT          TGGGGTGAGGGTACG 100 336
 JH290_00565  143669 ..  143691 -  -6.9  -3.03007   AAGATCGCGTGAAGA           TGCGACGCG GCGCA CGCGCCTCA           GCCACCGGATGCGCT  51 23
 JH290_00560  140449 ..  140480 - -20.3  -2.64616   CCGGTAGCGATAGCA      GCAGCCGTTCGAC AGCGTG GTCGAACGGCTGC       TCAAGCAGTTACCAG  90 34
 JH290_00555  137039 ..  137087 -  -5.2  -4.02719   GCACGAAAGAGGAAA CCGCGGAT-AGGCGAACGGGGCC AAGC GGCCCCGTTCGGATCATGCACAC GCCGACAGCGTGCAC  63 57
 JH290_00550  135044 ..  135060 -  -9.4  -2.52464   CGGTTTTTGAAGGGA              TCGGGC CTTGT GCCCGA              TCCTTTTTTTTGACC  56 453
 JH290_00535  132149 ..  132166 - -12.7  -3.69216   GGTGGACCCAAAAGA             GCGCCTG CGCT CAGGCGC              CAGCAGCATCCAGAC  81 18
 JH290_00515  127032 ..  127044 -  -6.9  -3.55444   GCGGCAGCGCGGAAA                GGCGA TCG CCGCC                AGCAAGGTTGCAGAC  59 111
 JH290_00510  125504 ..  125524 -    -4  -3.05384   CCGCCGGTGAGCGAA           CGCAAGATC TACT GACCT-GCG            TTGCCCGGACCTGGC  45 46
 JH290_00495  122360 ..  122385 -  -8.3  -3.18582   GACGGCACGGAGGAA         CCGGAATGTAC GTGG GTACATGCCGA          TTCCGAGCACCGGCC  58 87
 JH290_00490  121810 ..  121850 -    -6  -3.86897   TCTATGCGGCAGAAA GCCTGCATCGCGCAG-GAA TCAG CCCGCTGCGGGAAGCTGGC  AAGGTGTCGCGGGAG  62 481
 JH290_00455  113331 ..  113361 -  -7.5  -4.29396   AAGCAGCGATCAAAA      CGACTGCGCAGCCGC CAT GCGG--GCGCGGCCG      GTGCTCGGGATCGGC  76 277
 JH290_00415  104726 ..  104763 -  -2.5  -4.56597   GTCGCGGTTCAAAAA   GCCGTGCGAGGTTGCCGC GAA GCGATTACGGCGCA-GGC   CGCTGTCCACCGCAA  68 74
 JH290_00410  103381 ..  103438 - -13.9  -2.83522   AGGCGCGCAGCAAAC GCTGAGCGCG-GCCCCCGCGACCGCGCC ACC GGGGCGGTCGCGGGGGTGCGGTGTCTAC GCGATGCGGCCGTAC  74 321
 JH290_00380   94926 ..   94950 -  -9.1  -3.68222   GGGGAAGGGGAACAA          CGACGCCCGGC GCG GCCAGGCCACG          CGGCAACCACGGCGG  71 54
 JH290_00375 NONE
 JH290_00370 NONE
 JH290_00365 NONE
 JH290_00360   89948 ..   89973 -  -8.9  -3.01712   CTCGGTGTCGCAACA         CCGGCGCGCAC GTCA ACGCGCACCAG          TGGCATGCAAGCACT  57 68
 JH290_00345 NONE
 JH290_00340 NONE
 JH290_00335 NONE
 JH290_00325 NONE
 JH290_00320   81471 ..   81481 -  -2.4  -3.13728   AGCACGTACAGGTAA                 CGGG AAT CCGG                 GCCCACCTAGCCCCA  43 45
 JH290_00315   80871 ..   80886 -  -3.2  -3.02263   ACACGCGGGGCAAGA              CGATGC AGGA GCATGG               AGATCCTTTAGTAGC  43 263
 JH290_00310   79201 ..   79227 - -12.2  -2.87564   TCATGCCCTGACACA         CCGGCCGCACGT CGC ATGCACGGCCGG         CACACCCAACAGCTC  67 63
 JH290_00300   77480 ..   77504 -  -4.2  -2.53876   CCGGACTGCAAGCGA          CGCAGCTACA TTGCG TGCAGCCGGG          CGAATTGGCACTGCT  41 54
 JH290_00295 NONE
 JH290_00290   74793 ..   74824 - -11.8  -2.67803   GCCGCACTAAAGCTA      TATCCCCTTTTCAA ATAT CTGAAAAAGGGATA       AATTTGGGTGGCGGA  65 417
 JH290_00280   74299 ..   74322 -  -5.9  -3.27298   GGCCGCAAGCACCAA          CTGCGCGTGC ACATG GC-CGCGCTG          CGCGCGCCGATCCTG  53 218
 JH290_00270   72229 ..   72241 -  -3.3  -4.47183   GATTAGCCAAAGAAA                CGTGG GGA CAACG                CCGAGGTTGCAAACG  67 181
 JH290_00265   70336 ..   70348 -  -3.3  -3.05596   CAGTGGCCGATGGAA                CCCGT CTC ACGGT                GGATAGGGCGCTTGC  42 265
 JH290_00255 NONE
 JH290_00250   67080 ..   67096 -  -2.9  -3.89614   AACTGACAGATGAAA              GCTTGAG CGG CTCAGAC              CATTCGATGCTGAGG  56 20
 JH290_00245   65488 ..   65498 -  -5.4  -4.03234   GTGGGGGTAGAGAAA                 GTCA ACC TGAC                 CCTAAGGTATCCCCA  63 45
 JH290_00230   62636 ..   62671 - -19.1   -4.4267   CCCCAAAACGCAAAA    CGCCCGCGTGC-GACC GCCAG GGTCTACACGCGGGCG    CTGGCGAGCGCTGCG 100 44
 JH290_00225   62295 ..   62323 - -15.3  -2.75844   GGTGTCACCCTAAAC        GCGAGGTCAGGCG ATC CACCTGACCTCGT        TTGCCAGGTAGCAGG  78 50
 JH290_00200 NONE
 JH290_00195   50245 ..   50257 -  -9.1  -2.87132   CGGTGGGTCCACACA                CCGCA GGT TGCGG                GCGGGTGCGAGAAGA  58 49
        mlaD NONE
 JH290_00185 NONE
 JH290_00180 NONE
 JH290_00175   47562 ..   47581 -   -15  -5.88565   GCCACAACAAAAAAA            GCCCGGGA TCGC TCCCGGGC             TTTTTTATATTTTCC 100 62
 JH290_00140   40569 ..   40602 -  -3.5  -2.52676   GATGCCTTCAACGGA     CGCGGCCGCGTGCGC GACT GTGCGCGCGGTGGTG      ACTCAGCTCGCCGGC  39 28
 JH290_00135   40032 ..   40053 -  -2.2  -4.13561   TGTGCCCAAAAAACA           GGCGGTTG CGTCAT CAAGCACC            ATCGCGCTGGTGGCC  59 243
 JH290_00130   39277 ..   39293 -  -9.3  -3.53811   TCGATGTGCCGGAAA              CGCAGCC GCT GGCGGCG              ATGCAGATGCGCGTG  68 231
 JH290_00125   37419 ..   37441 - -19.2  -2.71712   GCGCGCGGCTTAAAG           CCCCTCTCCC CCC GGGAGAGGGG           TTGGGGTGAGGGTAC  87 312
 JH290_00060   18443 ..   18472 - -16.5  -2.90392   CACGCCGCAAGTACA       TCCCTGCCCGC GATGGTGG GCGGGCAGGGA        CCCCTCAAGATGGTC  83 117
 JH290_00055   17078 ..   17094 -  -7.9  -3.28924   TAGCCGCCTGCAGAA              CGCGCAC TAC GTGCCCG              GCGGGCGCTCGCGTG  58 15
 JH290_00040   11937 ..   11961 -  -8.5  -2.52896   GCATGCGCCAATCGA          CGAATGCTGCG AGC CGCAGTGTTCG          GCTGCATGCCTGCGA  53 79
 JH290_00035    8140 ..    8161 - -15.9   -4.7497   GCCACCCATGAAAAA           TCCGGCCTC TTGC GAGGCCGGA            TGCTGTGGTCACTTC 100 54
