locus-tag class description NRY95_00005 PF00308 Bacterial dnaA protein NRY95_00005 PF08299 Bacterial dnaA protein helix-turn-helix NRY95_00005 PF11638 DnaA N-terminal domain NRY95_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NRY95_00010 PF02767 DNA polymerase III beta subunit, central domain NRY95_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NRY95_00015 PF02463 RecF/RecN/SMC N terminal domain NRY95_00020 PF01751 Toprim domain NRY95_00020 PF18053 DNA gyrase B subunit insert domain NRY95_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_00020 PF00204 DNA gyrase B NRY95_00020 PF00986 DNA gyrase B subunit, carboxyl terminus NRY95_00025 PF02517 CPBP intramembrane metalloprotease NRY95_00030 PF01435 Peptidase family M48 NRY95_00040 PF03544 Gram-negative bacterial TonB protein C-terminal NRY95_00045 PF01618 MotA/TolQ/ExbB proton channel family NRY95_00050 PF02472 Biopolymer transport protein ExbD/TolR NRY95_00055 PF02472 Biopolymer transport protein ExbD/TolR NRY95_00060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NRY95_00070 PF13396 Phospholipase_D-nuclease N-terminal NRY95_00070 PF13091 PLD-like domain NRY95_00075 PF04055 Radical SAM superfamily NRY95_00105 PF01810 LysE type translocator NRY95_00115 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NRY95_00120 PF00155 Aminotransferase class I and II NRY95_00125 PF07715 TonB-dependent Receptor Plug Domain NRY95_00125 PF00593 TonB dependent receptor NRY95_00135 PF02954 Bacterial regulatory protein, Fis family NRY95_00135 PF01590 GAF domain NRY95_00135 PF00158 Sigma-54 interaction domain NRY95_00140 PF00171 Aldehyde dehydrogenase family NRY95_00145 PF00107 Zinc-binding dehydrogenase NRY95_00145 PF08240 Alcohol dehydrogenase GroES-like domain NRY95_00165 PF02735 Ku70/Ku80 beta-barrel domain NRY95_00170 PF04679 ATP dependent DNA ligase C terminal region NRY95_00170 PF13298 DNA polymerase Ligase (LigD) NRY95_00170 PF01068 ATP dependent DNA ligase domain NRY95_00175 PF01070 FMN-dependent dehydrogenase NRY95_00180 PF00392 Bacterial regulatory proteins, gntR family NRY95_00180 PF07729 FCD domain NRY95_00200 PF07730 Histidine kinase NRY95_00205 PF00196 Bacterial regulatory proteins, luxR family NRY95_00205 PF00072 Response regulator receiver domain NRY95_00210 PF07055 Enoyl reductase FAD binding domain NRY95_00210 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NRY95_00210 PF12241 Trans-2-enoyl-CoA reductase catalytic region NRY95_00215 PF00294 pfkB family carbohydrate kinase NRY95_00335 PF00593 TonB dependent receptor NRY95_00335 PF07715 TonB-dependent Receptor Plug Domain NRY95_00340 PF07715 TonB-dependent Receptor Plug Domain NRY95_00365 PF00135 Carboxylesterase family NRY95_00380 PF03480 Bacterial extracellular solute-binding protein, family 7 NRY95_00390 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NRY95_00395 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain NRY95_00395 PF04616 Glycosyl hydrolases family 43 NRY95_00400 PF00356 Bacterial regulatory proteins, lacI family NRY95_00405 PF04962 KduI/IolB family NRY95_00420 PF00657 GDSL-like Lipase/Acylhydrolase NRY95_00425 PF00144 Beta-lactamase NRY95_00430 PF03783 Curli production assembly/transport component CsgG NRY95_00440 PF05643 Putative bacterial lipoprotein (DUF799) NRY95_00445 PF00351 Biopterin-dependent aromatic amino acid hydroxylase NRY95_00450 PF01037 Lrp/AsnC ligand binding domain NRY95_00470 PF01734 Patatin-like phospholipase NRY95_00480 PF01569 PAP2 superfamily NRY95_00485 PF01569 PAP2 superfamily NRY95_00495 PF03741 Integral membrane protein TerC family NRY95_00500 PF10672 S-adenosylmethionine-dependent methyltransferase NRY95_00500 PF17785 PUA-like domain NRY95_00520 PF04820 Tryptophan halogenase NRY95_00530 PF02595 Glycerate kinase family NRY95_00535 PF10947 Protein of unknown function (DUF2628) NRY95_00540 PF07690 Major Facilitator Superfamily NRY95_00560 PF13520 Amino acid permease NRY95_00565 PF00196 Bacterial regulatory proteins, luxR family NRY95_00565 PF00072 Response regulator receiver domain NRY95_00570 PF08447 PAS fold NRY95_00570 PF13426 PAS domain NRY95_00570 PF00989 PAS fold NRY95_00570 PF00512 His Kinase A (phospho-acceptor) domain NRY95_00570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_00570 PF13493 Domain of unknown function (DUF4118) NRY95_00575 PF02308 MgtC family NRY95_00585 PF00043 Glutathione S-transferase, C-terminal domain NRY95_00585 PF13417 Glutathione S-transferase, N-terminal domain NRY95_00590 PF02646 RmuC family NRY95_00600 PF00255 Glutathione peroxidase NRY95_00610 PF04333 MlaA lipoprotein NRY95_00620 PF05494 MlaC protein NRY95_00625 PF02470 MlaD protein NRY95_00630 PF02405 Permease MlaE NRY95_00635 PF00005 ABC transporter NRY95_00670 PF17946 RecC C-terminal domain NRY95_00675 PF13361 UvrD-like helicase C-terminal domain NRY95_00675 PF00580 UvrD/REP helicase N-terminal domain NRY95_00675 PF12705 PD-(D/E)XK nuclease superfamily NRY95_00680 PF13538 UvrD-like helicase C-terminal domain NRY95_00705 PF09856 Predicted transcriptional regulator (DUF2083) NRY95_00705 PF06114 IrrE N-terminal-like domain NRY95_00705 PF01381 Helix-turn-helix NRY95_00710 PF01230 HIT domain NRY95_00720 PF05016 ParE toxin of type II toxin-antitoxin system, parDE NRY95_00725 PF09386 Antitoxin ParD NRY95_00740 PF01230 HIT domain NRY95_00765 PF08845 Toxin SymE, type I toxin-antitoxin system NRY95_00790 PF00083 Sugar (and other) transporter NRY95_00795 PF01227 GTP cyclohydrolase I NRY95_00820 PF01925 Sulfite exporter TauE/SafE NRY95_00825 PF02810 SEC-C motif NRY95_00830 PF00990 Diguanylate cyclase, GGDEF domain NRY95_00835 PF13406 Transglycosylase SLT domain NRY95_00840 PF07690 Major Facilitator Superfamily NRY95_00845 PF01126 Heme oxygenase NRY95_00850 PF01590 GAF domain NRY95_00850 PF08446 PAS fold NRY95_00850 PF00360 Phytochrome region NRY95_00850 PF13426 PAS domain NRY95_00855 PF03594 Benzoate membrane transport protein NRY95_00885 PF12849 PBP superfamily domain NRY95_00890 PF02142 MGS-like domain NRY95_00895 PF00150 Cellulase (glycosyl hydrolase family 5) NRY95_00900 PF00150 Cellulase (glycosyl hydrolase family 5) NRY95_00905 PF00150 Cellulase (glycosyl hydrolase family 5) NRY95_00910 PF01553 Acyltransferase NRY95_00925 PF00356 Bacterial regulatory proteins, lacI family NRY95_00935 PF04820 Tryptophan halogenase NRY95_00940 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NRY95_00945 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) NRY95_00950 PF08479 POTRA domain, ShlB-type NRY95_00950 PF17287 POTRA domain NRY95_00950 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NRY95_00955 PF05860 haemagglutination activity domain NRY95_00955 PF05860 haemagglutination activity domain NRY95_00955 PF13332 Hemagglutinin repeat NRY95_00955 PF04829 Pre-toxin domain with VENN motif NRY95_00955 PF13332 Hemagglutinin repeat NRY95_00955 PF04829 Pre-toxin domain with VENN motif NRY95_01005 PF13332 Hemagglutinin repeat NRY95_01005 PF04829 Pre-toxin domain with VENN motif NRY95_01010 PF07262 CDI immunity protein NRY95_01035 PF04337 Protein of unknown function, DUF480 NRY95_01050 PF01103 Surface antigen NRY95_01050 PF07244 Surface antigen variable number repeat NRY95_01050 PF17243 POTRA domain TamA domain 1 NRY95_01055 PF04357 TamB, inner membrane protein subunit of TAM complex NRY95_01070 PF05593 RHS Repeat NRY95_01070 PF03527 RHS protein NRY95_01080 PF10459 Peptidase S46 NRY95_01085 PF02245 Methylpurine-DNA glycosylase (MPG) NRY95_01100 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain NRY95_01100 PF06165 Glycosyltransferase family 36 NRY95_01105 PF00004 ATPase family associated with various cellular activities (AAA) NRY95_01105 PF17862 AAA+ lid domain NRY95_01105 PF01434 Peptidase family M41 NRY95_01110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_01110 PF00512 His Kinase A (phospho-acceptor) domain NRY95_01115 PF13181 Tetratricopeptide repeat NRY95_01120 PF00593 TonB dependent receptor NRY95_01120 PF07715 TonB-dependent Receptor Plug Domain NRY95_01135 PF02659 Putative manganese efflux pump NRY95_01150 PF00196 Bacterial regulatory proteins, luxR family NRY95_01150 PF00072 Response regulator receiver domain NRY95_01155 PF16177 Acetyl-coenzyme A synthetase N-terminus NRY95_01155 PF00501 AMP-binding enzyme NRY95_01155 PF13193 AMP-binding enzyme C-terminal domain NRY95_01165 PF07690 Major Facilitator Superfamily NRY95_01170 PF13419 Haloacid dehalogenase-like hydrolase NRY95_01175 PF00171 Aldehyde dehydrogenase family NRY95_01185 PF00639 PPIC-type PPIASE domain NRY95_01185 PF09312 SurA N-terminal domain NRY95_01205 PF04226 Transglycosylase associated protein NRY95_01210 PF01648 4'-phosphopantetheinyl transferase superfamily NRY95_01215 PF09423 PhoD-like phosphatase NRY95_01215 PF16655 PhoD-like phosphatase, N-terminal domain NRY95_01220 PF02527 rRNA small subunit methyltransferase G NRY95_01225 PF13614 AAA domain NRY95_01230 PF17762 HTH domain found in ParB protein NRY95_01230 PF02195 ParB-like nuclease domain NRY95_01240 PF01370 NAD dependent epimerase/dehydratase family NRY95_01245 PF00535 Glycosyl transferase family 2 NRY95_01275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRY95_01280 PF00873 AcrB/AcrD/AcrF family NRY95_01290 PF00830 Ribosomal L28 family NRY95_01295 PF00471 Ribosomal protein L33 NRY95_01300 PF13396 Phospholipase_D-nuclease N-terminal NRY95_01300 PF13091 PLD-like domain NRY95_01310 PF13361 UvrD-like helicase C-terminal domain NRY95_01310 PF00580 UvrD/REP helicase N-terminal domain NRY95_01350 PF00582 Universal stress protein family NRY95_01360 PF01367 5'-3' exonuclease, C-terminal SAM fold NRY95_01360 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NRY95_01360 PF01612 3'-5' exonuclease NRY95_01360 PF00476 DNA polymerase family A NRY95_01370 PF04239 Protein of unknown function (DUF421) NRY95_01380 PF01218 Coproporphyrinogen III oxidase NRY95_01400 PF01654 Cytochrome bd terminal oxidase subunit I NRY95_01405 PF02322 Cytochrome bd terminal oxidase subunit II NRY95_01435 PF04820 Tryptophan halogenase NRY95_01440 PF00550 Phosphopantetheine attachment site NRY95_01455 PF07977 FabA-like domain NRY95_01480 PF07690 Major Facilitator Superfamily NRY95_01485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_01485 PF03466 LysR substrate binding domain NRY95_01490 PF00106 short chain dehydrogenase NRY95_01505 PF01494 FAD binding domain NRY95_01510 PF00535 Glycosyl transferase family 2 NRY95_01520 PF02801 Beta-ketoacyl synthase, C-terminal domain NRY95_01520 PF00109 Beta-ketoacyl synthase, N-terminal domain NRY95_01525 PF05166 YcgL domain NRY95_01535 PF00723 Glycosyl hydrolases family 15 NRY95_01540 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NRY95_01540 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NRY95_01545 PF00999 Sodium/hydrogen exchanger family NRY95_01545 PF02254 TrkA-N domain NRY95_01550 PF00583 Acetyltransferase (GNAT) family NRY95_01550 PF13607 Succinyl-CoA ligase like flavodoxin domain NRY95_01550 PF13380 CoA binding domain NRY95_01560 PF00313 'Cold-shock' DNA-binding domain NRY95_01575 PF00289 Biotin carboxylase, N-terminal domain NRY95_01575 PF02785 Biotin carboxylase C-terminal domain NRY95_01575 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRY95_01575 PF00364 Biotin-requiring enzyme NRY95_01585 PF01039 Carboxyl transferase domain NRY95_01590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRY95_01590 PF02770 Acyl-CoA dehydrogenase, middle domain NRY95_01590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRY95_01600 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRY95_01615 PF02492 CobW/HypB/UreG, nucleotide-binding domain NRY95_01615 PF07683 Cobalamin synthesis protein cobW C-terminal domain NRY95_01630 PF03969 AFG1-like ATPase NRY95_01635 PF01047 MarR family NRY95_01640 PF02566 OsmC-like protein NRY95_01650 PF02146 Sir2 family NRY95_01660 PF00512 His Kinase A (phospho-acceptor) domain NRY95_01660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_01660 PF00672 HAMP domain NRY95_01665 PF00072 Response regulator receiver domain NRY95_01665 PF00486 Transcriptional regulatory protein, C terminal NRY95_01680 PF04116 Fatty acid hydroxylase superfamily NRY95_01685 PF02867 Ribonucleotide reductase, barrel domain NRY95_01685 PF00317 Ribonucleotide reductase, all-alpha domain NRY95_01685 PF03477 ATP cone domain NRY95_01690 PF00268 Ribonucleotide reductase, small chain NRY95_01710 PF03466 LysR substrate binding domain NRY95_01710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_01715 PF07690 Major Facilitator Superfamily NRY95_01720 PF04151 Bacterial pre-peptidase C-terminal domain NRY95_01720 PF00082 Subtilase family NRY95_01730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_01730 PF00512 His Kinase A (phospho-acceptor) domain NRY95_01730 PF00072 Response regulator receiver domain NRY95_01730 PF08448 PAS fold NRY95_01730 PF13188 PAS domain NRY95_01735 PF00072 Response regulator receiver domain NRY95_01735 PF00486 Transcriptional regulatory protein, C terminal NRY95_01740 PF02146 Sir2 family NRY95_01745 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRY95_01750 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NRY95_01750 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NRY95_01760 PF00551 Formyl transferase NRY95_01765 PF00072 Response regulator receiver domain NRY95_01765 PF00486 Transcriptional regulatory protein, C terminal NRY95_01770 PF00672 HAMP domain NRY95_01770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_01770 PF00512 His Kinase A (phospho-acceptor) domain NRY95_01775 PF00529 HlyD membrane-fusion protein of T1SS NRY95_01775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRY95_01780 PF00873 AcrB/AcrD/AcrF family NRY95_01785 PF02321 Outer membrane efflux protein NRY95_01795 PF13180 PDZ domain NRY95_01800 PF01717 Cobalamin-independent synthase, Catalytic domain NRY95_01800 PF08267 Cobalamin-independent synthase, N-terminal domain NRY95_01825 PF01207 Dihydrouridine synthase (Dus) NRY95_01835 PF00072 Response regulator receiver domain NRY95_01835 PF00486 Transcriptional regulatory protein, C terminal NRY95_01840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_01855 PF06167 Glucose-regulated metallo-peptidase M90 NRY95_01865 PF02237 Biotin protein ligase C terminal domain NRY95_01865 PF03099 Biotin/lipoate A/B protein ligase family NRY95_01870 PF03309 Type III pantothenate kinase NRY95_01885 PF00491 Arginase family NRY95_01900 PF05532 CsbD-like NRY95_01910 PF00579 tRNA synthetases class I (W and Y) NRY95_01915 PF00753 Metallo-beta-lactamase superfamily NRY95_01925 PF00892 EamA-like transporter family NRY95_01930 PF00892 EamA-like transporter family NRY95_01945 PF02687 FtsX-like permease family NRY95_01945 PF12704 MacB-like periplasmic core domain NRY95_01950 PF00005 ABC transporter NRY95_01955 PF13533 Biotin-lipoyl like NRY95_01960 PF00005 ABC transporter NRY95_01970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_01970 PF07730 Histidine kinase NRY95_01975 PF00196 Bacterial regulatory proteins, luxR family NRY95_01975 PF00072 Response regulator receiver domain NRY95_01980 PF07715 TonB-dependent Receptor Plug Domain NRY95_01980 PF00593 TonB dependent receptor NRY95_01995 PF00199 Catalase NRY95_02000 PF04542 Sigma-70 region 2 NRY95_02000 PF08281 Sigma-70, region 4 NRY95_02010 PF00883 Cytosol aminopeptidase family, catalytic domain NRY95_02010 PF02789 Cytosol aminopeptidase family, N-terminal domain NRY95_02015 PF13419 Haloacid dehalogenase-like hydrolase NRY95_02020 PF01594 AI-2E family transporter NRY95_02040 PF13180 PDZ domain NRY95_02040 PF00595 PDZ domain NRY95_02095 PF03466 LysR substrate binding domain NRY95_02095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_02105 PF00175 Oxidoreductase NAD-binding domain NRY95_02105 PF00258 Flavodoxin NRY95_02105 PF00667 FAD binding domain NRY95_02110 PF04052 TolB amino-terminal domain NRY95_02110 PF07676 WD40-like Beta Propeller Repeat NRY95_02115 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NRY95_02115 PF08501 Shikimate dehydrogenase substrate binding domain NRY95_02115 PF01488 Shikimate / quinate 5-dehydrogenase NRY95_02130 PF06733 DEAD_2 NRY95_02130 PF13307 Helicase C-terminal domain NRY95_02145 PF00199 Catalase NRY95_02145 PF06628 Catalase-related immune-responsive NRY95_02155 PF00990 Diguanylate cyclase, GGDEF domain NRY95_02155 PF01590 GAF domain NRY95_02155 PF00360 Phytochrome region NRY95_02155 PF00563 EAL domain NRY95_02165 PF00326 Prolyl oligopeptidase family NRY95_02195 PF01594 AI-2E family transporter NRY95_02225 PF01177 Asp/Glu/Hydantoin racemase NRY95_02270 PF00920 Dehydratase family NRY95_02280 PF03738 Glutathionylspermidine synthase preATP-grasp NRY95_02290 PF17863 AAA lid domain NRY95_02290 PF07726 ATPase family associated with various cellular activities (AAA) NRY95_02325 PF01037 Lrp/AsnC ligand binding domain NRY95_02330 PF00132 Bacterial transferase hexapeptide (six repeats) NRY95_02335 PF05048 Periplasmic copper-binding protein (NosD) NRY95_02340 PF04966 Carbohydrate-selective porin, OprB family NRY95_02345 PF01487 Type I 3-dehydroquinase NRY95_02350 PF07690 Major Facilitator Superfamily NRY95_02370 PF00171 Aldehyde dehydrogenase family NRY95_02375 PF00378 Enoyl-CoA hydratase/isomerase NRY95_02380 PF13607 Succinyl-CoA ligase like flavodoxin domain NRY95_02380 PF13380 CoA binding domain NRY95_02385 PF07859 alpha/beta hydrolase fold NRY95_02395 PF01494 FAD binding domain NRY95_02400 PF00111 2Fe-2S iron-sulfur cluster binding domain NRY95_02400 PF00175 Oxidoreductase NAD-binding domain NRY95_02410 PF00355 Rieske [2Fe-2S] domain NRY95_02415 PF01144 Coenzyme A transferase NRY95_02420 PF01144 Coenzyme A transferase NRY95_02425 PF02803 Thiolase, C-terminal domain NRY95_02425 PF00108 Thiolase, N-terminal domain NRY95_02430 PF00775 Dioxygenase NRY95_02430 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal NRY95_02440 PF00206 Lyase NRY95_02440 PF10397 Adenylosuccinate lyase C-terminus NRY95_02445 PF12146 Serine aminopeptidase, S33 NRY95_02450 PF02627 Carboxymuconolactone decarboxylase family NRY95_02460 PF01614 Bacterial transcriptional regulator NRY95_02460 PF09339 IclR helix-turn-helix domain NRY95_02465 PF01011 PQQ enzyme repeat NRY95_02480 PF00529 HlyD membrane-fusion protein of T1SS NRY95_02480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRY95_02485 PF00873 AcrB/AcrD/AcrF family NRY95_02490 PF02321 Outer membrane efflux protein NRY95_02495 PF10127 RNA repair pathway DNA polymerase beta family NRY95_02500 PF13932 GidA associated domain NRY95_02500 PF01134 Glucose inhibited division protein A NRY95_02510 PF00291 Pyridoxal-phosphate dependent enzyme NRY95_02525 PF13649 Methyltransferase domain NRY95_02530 PF00106 short chain dehydrogenase NRY95_02535 PF12697 Alpha/beta hydrolase family NRY95_02545 PF00155 Aminotransferase class I and II NRY95_02550 PF06968 Biotin and Thiamin Synthesis associated domain NRY95_02550 PF04055 Radical SAM superfamily NRY95_02560 PF07549 SecD/SecF GG Motif NRY95_02560 PF02355 Protein export membrane protein NRY95_02565 PF01040 UbiA prenyltransferase family NRY95_02575 PF13356 Arm DNA-binding domain NRY95_02575 PF00589 Phage integrase family NRY95_02585 PF03389 MobA/MobL family NRY95_02590 PF13148 Protein of unknown function (DUF3987) NRY95_02620 PF16713 Enriched in aromatic and glycine Residues box NRY95_02620 PF00226 DnaJ domain NRY95_02620 PF01556 DnaJ C terminal domain NRY95_02630 PF04002 RadC-like JAB domain NRY95_02670 PF01527 Transposase NRY95_02675 PF13276 HTH-like domain NRY95_02675 PF13333 Integrase core domain NRY95_02675 PF00665 Integrase core domain NRY95_02685 PF03852 DNA mismatch endonuclease Vsr NRY95_02705 PF00145 C-5 cytosine-specific DNA methylase NRY95_02725 PF01078 Magnesium chelatase, subunit ChlI NRY95_02725 PF13335 Magnesium chelatase, subunit ChlI C-terminal NRY95_02730 PF04380 Membrane fusogenic activity NRY95_02735 PF00543 Nitrogen regulatory protein P-II NRY95_02740 PF17284 Spermidine synthase tetramerisation domain NRY95_02745 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRY95_02745 PF17810 Arginine decarboxylase helical bundle domain NRY95_02745 PF17944 Arginine decarboxylase C-terminal helical extension NRY95_02750 PF00501 AMP-binding enzyme NRY95_02750 PF13193 AMP-binding enzyme C-terminal domain NRY95_02750 PF00668 Condensation domain NRY95_02750 PF00550 Phosphopantetheine attachment site NRY95_02750 PF00975 Thioesterase domain NRY95_02755 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase NRY95_02755 PF03033 Glycosyltransferase family 28 N-terminal domain NRY95_02760 PF01757 Acyltransferase family NRY95_02765 PF03466 LysR substrate binding domain NRY95_02765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_02785 PF00106 short chain dehydrogenase NRY95_02795 PF00750 tRNA synthetases class I (R) NRY95_02795 PF05746 DALR anticodon binding domain NRY95_02795 PF03485 Arginyl tRNA synthetase N terminal domain NRY95_02800 PF04002 RadC-like JAB domain NRY95_02805 PF02441 Flavoprotein NRY95_02805 PF04127 DNA / pantothenate metabolism flavoprotein NRY95_02810 PF00692 dUTPase NRY95_02815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NRY95_02815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NRY95_02815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NRY95_02815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NRY95_02825 PF00156 Phosphoribosyl transferase domain NRY95_02835 PF07690 Major Facilitator Superfamily NRY95_02845 PF03702 Anhydro-N-acetylmuramic acid kinase NRY95_02850 PF01551 Peptidase family M23 NRY95_02850 PF04225 Opacity-associated protein A LysM-like domain NRY95_02855 PF00579 tRNA synthetases class I (W and Y) NRY95_02885 PF00107 Zinc-binding dehydrogenase NRY95_02885 PF08240 Alcohol dehydrogenase GroES-like domain NRY95_02890 PF04389 Peptidase family M28 NRY95_02900 PF01551 Peptidase family M23 NRY95_02905 PF03572 Peptidase family S41 NRY95_02905 PF13180 PDZ domain NRY95_02910 PF11890 Domain of unknown function (DUF3410) NRY95_02910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRY95_02910 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRY95_02925 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NRY95_02935 PF01301 Glycosyl hydrolases family 35 NRY95_02940 PF13520 Amino acid permease NRY95_02950 PF11975 Family 4 glycosyl hydrolase C-terminal domain NRY95_02950 PF02056 Family 4 glycosyl hydrolase NRY95_02955 PF01619 Proline dehydrogenase NRY95_02955 PF00171 Aldehyde dehydrogenase family NRY95_02955 PF14850 DNA-binding domain of Proline dehydrogenase NRY95_02955 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NRY95_02970 PF02790 Cytochrome C oxidase subunit II, transmembrane domain NRY95_02970 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NRY95_02975 PF00115 Cytochrome C and Quinol oxidase polypeptide I NRY95_02985 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 NRY95_02990 PF00510 Cytochrome c oxidase subunit III NRY95_03015 PF01040 UbiA prenyltransferase family NRY95_03030 PF13593 SBF-like CPA transporter family (DUF4137) NRY95_03035 PF10410 DnaB-helicase binding domain of primase NRY95_03035 PF08278 DNA primase DnaG DnaB-binding NRY95_03035 PF01807 CHC2 zinc finger NRY95_03035 PF08275 DNA primase catalytic core, N-terminal domain NRY95_03040 PF03631 Virulence factor BrkB NRY95_03045 PF09424 Yqey-like protein NRY95_03050 PF01165 Ribosomal protein S21 NRY95_03055 PF00814 Glycoprotease family NRY95_03060 PF02152 Dihydroneopterin aldolase NRY95_03065 PF14403 Circularly permuted ATP-grasp type 2 NRY95_03075 PF14310 Fibronectin type III-like domain NRY95_03075 PF00933 Glycosyl hydrolase family 3 N terminal domain NRY95_03075 PF01915 Glycosyl hydrolase family 3 C-terminal domain NRY95_03080 PF07995 Glucose / Sorbosone dehydrogenase NRY95_03095 PF13520 Amino acid permease NRY95_03105 PF13378 Enolase C-terminal domain-like NRY95_03105 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NRY95_03115 PF00593 TonB dependent receptor NRY95_03115 PF07715 TonB-dependent Receptor Plug Domain NRY95_03125 PF01510 N-acetylmuramoyl-L-alanine amidase NRY95_03125 PF01471 Putative peptidoglycan binding domain NRY95_03155 PF04717 Type VI secretion system, phage-baseplate injector NRY95_03155 PF01471 Putative peptidoglycan binding domain NRY95_03160 PF00873 AcrB/AcrD/AcrF family NRY95_03175 PF02321 Outer membrane efflux protein NRY95_03180 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRY95_03180 PF02142 MGS-like domain NRY95_03180 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NRY95_03195 PF03059 Nicotianamine synthase protein NRY95_03235 PF07063 Domain of unknown function (DUF1338) NRY95_03245 PF00873 AcrB/AcrD/AcrF family NRY95_03250 PF00873 AcrB/AcrD/AcrF family NRY95_03260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRY95_03265 PF01546 Peptidase family M20/M25/M40 NRY95_03265 PF07687 Peptidase dimerisation domain NRY95_03270 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NRY95_03270 PF14489 QueF-like protein NRY95_03275 PF04972 BON domain NRY95_03275 PF01476 LysM domain NRY95_03295 PF03971 Monomeric isocitrate dehydrogenase NRY95_03300 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) NRY95_03315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRY95_03315 PF07498 Rho termination factor, N-terminal domain NRY95_03315 PF07497 Rho termination factor, RNA-binding domain NRY95_03320 PF00085 Thioredoxin NRY95_03325 PF00270 DEAD/DEAH box helicase NRY95_03325 PF00271 Helicase conserved C-terminal domain NRY95_03325 PF12300 ATP-dependent RNA helicase RhlB NRY95_03330 PF00005 ABC transporter NRY95_03335 PF18075 FtsX extracellular domain NRY95_03340 PF01339 CheB methylesterase NRY95_03340 PF00072 Response regulator receiver domain NRY95_03345 PF03167 Uracil DNA glycosylase superfamily NRY95_03350 PF00140 Sigma-70 factor, region 1.2 NRY95_03350 PF04542 Sigma-70 region 2 NRY95_03350 PF04545 Sigma-70, region 4 NRY95_03355 PF03458 UPF0126 domain NRY95_03360 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRY95_03370 PF00270 DEAD/DEAH box helicase NRY95_03370 PF00271 Helicase conserved C-terminal domain NRY95_03370 PF17764 3′ DNA-binding domain (3′BD) NRY95_03370 PF18074 Primosomal protein N C-terminal domain NRY95_03370 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NRY95_03380 PF01554 MatE NRY95_03385 PF01343 Peptidase family S49 NRY95_03400 PF00437 Type II/IV secretion system protein NRY95_03420 PF00571 CBS domain NRY95_03420 PF00291 Pyridoxal-phosphate dependent enzyme NRY95_03425 PF01053 Cys/Met metabolism PLP-dependent enzyme NRY95_03440 PF00005 ABC transporter NRY95_03450 PF16363 GDP-mannose 4,6 dehydratase NRY95_03455 PF16363 GDP-mannose 4,6 dehydratase NRY95_03460 PF13439 Glycosyltransferase Family 4 NRY95_03460 PF00534 Glycosyl transferases group 1 NRY95_03470 PF01370 NAD dependent epimerase/dehydratase family NRY95_03495 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NRY95_03495 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NRY95_03495 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NRY95_03505 PF01012 Electron transfer flavoprotein domain NRY95_03505 PF00766 Electron transfer flavoprotein FAD-binding domain NRY95_03510 PF01012 Electron transfer flavoprotein domain NRY95_03515 PF16363 GDP-mannose 4,6 dehydratase NRY95_03520 PF00483 Nucleotidyl transferase NRY95_03525 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NRY95_03530 PF04321 RmlD substrate binding domain NRY95_03540 PF01050 Mannose-6-phosphate isomerase NRY95_03540 PF00483 Nucleotidyl transferase NRY95_03545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NRY95_03545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NRY95_03545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NRY95_03545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NRY95_03550 PF01144 Coenzyme A transferase NRY95_03555 PF01144 Coenzyme A transferase NRY95_03580 PF02470 MlaD protein NRY95_03580 PF03886 ABC-type transport auxiliary lipoprotein component NRY95_03585 PF00005 ABC transporter NRY95_03590 PF02405 Permease MlaE NRY95_03605 PF08240 Alcohol dehydrogenase GroES-like domain NRY95_03605 PF00107 Zinc-binding dehydrogenase NRY95_03615 PF00550 Phosphopantetheine attachment site NRY95_03615 PF08659 KR domain NRY95_03615 PF02801 Beta-ketoacyl synthase, C-terminal domain NRY95_03615 PF00109 Beta-ketoacyl synthase, N-terminal domain NRY95_03615 PF14765 Polyketide synthase dehydratase NRY95_03615 PF16197 Ketoacyl-synthetase C-terminal extension NRY95_03615 PF00698 Acyl transferase domain NRY95_03620 PF08659 KR domain NRY95_03620 PF02801 Beta-ketoacyl synthase, C-terminal domain NRY95_03620 PF00550 Phosphopantetheine attachment site NRY95_03620 PF14765 Polyketide synthase dehydratase NRY95_03620 PF00698 Acyl transferase domain NRY95_03620 PF00109 Beta-ketoacyl synthase, N-terminal domain NRY95_03620 PF16197 Ketoacyl-synthetase C-terminal extension NRY95_03620 PF08240 Alcohol dehydrogenase GroES-like domain NRY95_03620 PF08990 Erythronolide synthase docking NRY95_03635 PF00109 Beta-ketoacyl synthase, N-terminal domain NRY95_03635 PF02801 Beta-ketoacyl synthase, C-terminal domain NRY95_03640 PF07977 FabA-like domain NRY95_03650 PF00501 AMP-binding enzyme NRY95_03650 PF13193 AMP-binding enzyme C-terminal domain NRY95_03655 PF00196 Bacterial regulatory proteins, luxR family NRY95_03655 PF00072 Response regulator receiver domain NRY95_03670 PF00816 H-NS histone family NRY95_03675 PF04073 Aminoacyl-tRNA editing domain NRY95_03675 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRY95_03675 PF03129 Anticodon binding domain NRY95_03685 PF01066 CDP-alcohol phosphatidyltransferase NRY95_03700 PF00544 Pectate lyase NRY95_03710 PF08264 Anticodon-binding domain of tRNA NRY95_03710 PF00133 tRNA synthetases class I (I, L, M and V) NRY95_03710 PF10458 Valyl tRNA synthetase tRNA binding arm NRY95_03720 PF00883 Cytosol aminopeptidase family, catalytic domain NRY95_03720 PF02789 Cytosol aminopeptidase family, N-terminal domain NRY95_03745 PF00589 Phage integrase family NRY95_03745 PF02899 Phage integrase, N-terminal SAM-like domain NRY95_03750 PF10411 Disulfide bond isomerase protein N-terminus NRY95_03750 PF13098 Thioredoxin-like domain NRY95_03755 PF02769 AIR synthase related protein, C-terminal domain NRY95_03755 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NRY95_03755 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NRY95_03765 PF13018 Extended Signal Peptide of Type V secretion system NRY95_03765 PF05662 Coiled stalk of trimeric autotransporter adhesin NRY95_03765 PF05658 Head domain of trimeric autotransporter adhesin NRY95_03765 PF03895 YadA-like membrane anchor domain NRY95_03770 PF04151 Bacterial pre-peptidase C-terminal domain NRY95_03770 PF00082 Subtilase family NRY95_03775 PF00437 Type II/IV secretion system protein NRY95_03775 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NRY95_03780 PF00482 Type II secretion system (T2SS), protein F NRY95_03785 PF08334 Type II secretion system (T2SS), protein G NRY95_03790 PF12019 Type II transport protein GspH NRY95_03795 PF07963 Prokaryotic N-terminal methylation motif NRY95_03805 PF03934 Type II secretion system (T2SS), protein K NRY95_03810 PF05137 Fimbrial assembly protein (PilN) NRY95_03815 PF10741 Type II secretion system (T2SS), protein M subtype b NRY95_03825 PF03958 Bacterial type II/III secretion system short domain NRY95_03825 PF00263 Bacterial type II and III secretion system protein NRY95_03835 PF07702 UTRA domain NRY95_03835 PF00392 Bacterial regulatory proteins, gntR family NRY95_03845 PF07715 TonB-dependent Receptor Plug Domain NRY95_03845 PF00593 TonB dependent receptor NRY95_03880 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NRY95_03880 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NRY95_03895 PF03552 Cellulose synthase NRY95_03895 PF00535 Glycosyl transferase family 2 NRY95_03895 PF07238 PilZ domain NRY95_03900 PF03170 Bacterial cellulose synthase subunit NRY95_03905 PF01270 Glycosyl hydrolases family 8 NRY95_03910 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) NRY95_03915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_03915 PF00672 HAMP domain NRY95_03915 PF00512 His Kinase A (phospho-acceptor) domain NRY95_03915 PF16527 Two-component sensor protein CpxA, periplasmic domain NRY95_03920 PF00072 Response regulator receiver domain NRY95_03920 PF00486 Transcriptional regulatory protein, C terminal NRY95_03935 PF02583 Metal-sensitive transcriptional repressor NRY95_03940 PF00107 Zinc-binding dehydrogenase NRY95_03940 PF08240 Alcohol dehydrogenase GroES-like domain NRY95_03945 PF04828 Glutathione-dependent formaldehyde-activating enzyme NRY95_03950 PF00756 Putative esterase NRY95_03960 PF01464 Transglycosylase SLT domain NRY95_03975 PF03135 CagE, TrbE, VirB family, component of type IV transporter system NRY95_03980 PF04610 TrbL/VirB6 plasmid conjugal transfer protein NRY95_03985 PF03524 Conjugal transfer protein NRY95_03990 PF03743 Bacterial conjugation TrbI-like protein NRY95_04000 PF00437 Type II/IV secretion system protein NRY95_04010 PF00392 Bacterial regulatory proteins, gntR family NRY95_04010 PF00155 Aminotransferase class I and II NRY95_04015 PF02567 Phenazine biosynthesis-like protein NRY95_04020 PF00892 EamA-like transporter family NRY95_04030 PF02645 Uncharacterised protein, DegV family COG1307 NRY95_04035 PF01323 DSBA-like thioredoxin domain NRY95_04050 PF01979 Amidohydrolase family NRY95_04050 PF00449 Urease alpha-subunit, N-terminal domain NRY95_04055 PF01979 Amidohydrolase family NRY95_04070 PF00462 Glutaredoxin NRY95_04075 PF01522 Polysaccharide deacetylase NRY95_04095 PF00155 Aminotransferase class I and II NRY95_04100 PF03193 RsgA GTPase NRY95_04110 PF00665 Integrase core domain NRY95_04110 PF13936 Helix-turn-helix domain NRY95_04130 PF00106 short chain dehydrogenase NRY95_04135 PF03600 Citrate transporter NRY95_04145 PF00072 Response regulator receiver domain NRY95_04145 PF00486 Transcriptional regulatory protein, C terminal NRY95_04150 PF00512 His Kinase A (phospho-acceptor) domain NRY95_04150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_04150 PF08521 Two-component sensor kinase N-terminal NRY95_04165 PF00072 Response regulator receiver domain NRY95_04165 PF00196 Bacterial regulatory proteins, luxR family NRY95_04175 PF00512 His Kinase A (phospho-acceptor) domain NRY95_04175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_04185 PF00375 Sodium:dicarboxylate symporter family NRY95_04190 PF03949 Malic enzyme, NAD binding domain NRY95_04190 PF01515 Phosphate acetyl/butaryl transferase NRY95_04190 PF00390 Malic enzyme, N-terminal domain NRY95_04205 PF00529 HlyD membrane-fusion protein of T1SS NRY95_04205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRY95_04220 PF03412 Peptidase C39 family NRY95_04220 PF00664 ABC transporter transmembrane region NRY95_04220 PF00005 ABC transporter NRY95_04245 PF03279 Bacterial lipid A biosynthesis acyltransferase NRY95_04250 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NRY95_04255 PF02321 Outer membrane efflux protein NRY95_04275 PF00501 AMP-binding enzyme NRY95_04285 PF00106 short chain dehydrogenase NRY95_04295 PF00072 Response regulator receiver domain NRY95_04295 PF00486 Transcriptional regulatory protein, C terminal NRY95_04300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_04300 PF00512 His Kinase A (phospho-acceptor) domain NRY95_04300 PF08521 Two-component sensor kinase N-terminal NRY95_04305 PF00990 Diguanylate cyclase, GGDEF domain NRY95_04310 PF00180 Isocitrate/isopropylmalate dehydrogenase NRY95_04315 PF00694 Aconitase C-terminal domain NRY95_04325 PF00330 Aconitase family (aconitate hydratase) NRY95_04330 PF08502 LeuA allosteric (dimerisation) domain NRY95_04330 PF00682 HMGL-like NRY95_04335 PF00291 Pyridoxal-phosphate dependent enzyme NRY95_04345 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRY95_04345 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRY95_04345 PF00205 Thiamine pyrophosphate enzyme, central domain NRY95_04350 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NRY95_04350 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NRY95_04360 PF02028 BCCT, betaine/carnitine/choline family transporter NRY95_04365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_04365 PF00672 HAMP domain NRY95_04370 PF13667 ThiC-associated domain NRY95_04370 PF01964 Radical SAM ThiC family NRY95_04385 PF12833 Helix-turn-helix domain NRY95_04390 PF07715 TonB-dependent Receptor Plug Domain NRY95_04390 PF00593 TonB dependent receptor NRY95_04400 PF00719 Inorganic pyrophosphatase NRY95_04410 PF03030 Inorganic H+ pyrophosphatase NRY95_04430 PF00365 Phosphofructokinase NRY95_04440 PF08245 Mur ligase middle domain NRY95_04440 PF01225 Mur ligase family, catalytic domain NRY95_04440 PF02875 Mur ligase family, glutamate ligase domain NRY95_04450 PF01569 PAP2 superfamily NRY95_04470 PF07715 TonB-dependent Receptor Plug Domain NRY95_04470 PF00593 TonB dependent receptor NRY95_04475 PF00480 ROK family NRY95_04480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRY95_04495 PF00202 Aminotransferase class-III NRY95_04505 PF07715 TonB-dependent Receptor Plug Domain NRY95_04505 PF00593 TonB dependent receptor NRY95_04510 PF01593 Flavin containing amine oxidoreductase NRY95_04515 PF00034 Cytochrome c NRY95_04515 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRY95_04525 PF00155 Aminotransferase class I and II NRY95_04530 PF00127 Copper binding proteins, plastocyanin/azurin family NRY95_04535 PF13191 AAA ATPase domain NRY95_04535 PF00069 Protein kinase domain NRY95_04540 PF00202 Aminotransferase class-III NRY95_04550 PF02581 Thiamine monophosphate synthase NRY95_04555 PF00301 Rubredoxin NRY95_04560 PF13369 Transglutaminase-like superfamily NRY95_04570 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NRY95_04580 PF01812 5-formyltetrahydrofolate cyclo-ligase family NRY95_04595 PF05164 Cell division protein ZapA NRY95_04605 PF00563 EAL domain NRY95_04605 PF03707 Bacterial signalling protein N terminal repeat NRY95_04605 PF00990 Diguanylate cyclase, GGDEF domain NRY95_04610 PF03695 Uncharacterised protein family (UPF0149) NRY95_04615 PF00557 Metallopeptidase family M24 NRY95_04615 PF05195 Aminopeptidase P, N-terminal domain NRY95_04620 PF00557 Metallopeptidase family M24 NRY95_04635 PF04055 Radical SAM superfamily NRY95_04635 PF06969 HemN C-terminal domain NRY95_04645 PF01725 Ham1 family NRY95_04650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRY95_04655 PF01138 3' exoribonuclease family, domain 1 NRY95_04655 PF03725 3' exoribonuclease family, domain 2 NRY95_04660 PF08340 Domain of unknown function (DUF1732) NRY95_04660 PF03755 YicC-like family, N-terminal region NRY95_04665 PF00625 Guanylate kinase NRY95_04670 PF01192 RNA polymerase Rpb6 NRY95_04675 PF13291 ACT domain NRY95_04675 PF04607 Region found in RelA / SpoT proteins NRY95_04675 PF02824 TGS domain NRY95_04680 PF01042 Endoribonuclease L-PSP NRY95_04685 PF17191 RecG wedge domain NRY95_04685 PF00270 DEAD/DEAH box helicase NRY95_04685 PF00271 Helicase conserved C-terminal domain NRY95_04690 PF01156 Inosine-uridine preferring nucleoside hydrolase NRY95_04695 PF01197 Ribosomal protein L31 NRY95_04700 PF00285 Citrate synthase, C-terminal domain NRY95_04715 PF17092 Penicillin-binding protein OB-like domain NRY95_04715 PF00912 Transglycosylase NRY95_04715 PF00905 Penicillin binding protein transpeptidase domain NRY95_04720 PF11104 Type IV pilus assembly protein PilM; NRY95_04730 PF04350 Pilus assembly protein, PilO NRY95_04735 PF04351 Pilus assembly protein, PilP NRY95_04740 PF07660 Secretin and TonB N terminus short domain NRY95_04740 PF11741 AMIN domain NRY95_04740 PF00263 Bacterial type II and III secretion system protein NRY95_04740 PF03958 Bacterial type II/III secretion system short domain NRY95_04745 PF17863 AAA lid domain NRY95_04745 PF07726 ATPase family associated with various cellular activities (AAA) NRY95_04750 PF01882 Protein of unknown function DUF58 NRY95_04760 PF13519 von Willebrand factor type A domain NRY95_04775 PF00375 Sodium:dicarboxylate symporter family NRY95_04780 PF02780 Transketolase, C-terminal domain NRY95_04780 PF02779 Transketolase, pyrimidine binding domain NRY95_04780 PF00456 Transketolase, thiamine diphosphate binding domain NRY95_04805 PF04225 Opacity-associated protein A LysM-like domain NRY95_04805 PF01551 Peptidase family M23 NRY95_04810 PF03734 L,D-transpeptidase catalytic domain NRY95_04810 PF01476 LysM domain NRY95_04835 PF03965 Penicillinase repressor NRY95_04840 PF03544 Gram-negative bacterial TonB protein C-terminal NRY95_04855 PF00005 ABC transporter NRY95_04855 PF03459 TOBE domain NRY95_04860 PF00528 Binding-protein-dependent transport system inner membrane component NRY95_04875 PF00753 Metallo-beta-lactamase superfamily NRY95_04880 PF01022 Bacterial regulatory protein, arsR family NRY95_04895 PF00873 AcrB/AcrD/AcrF family NRY95_04905 PF00085 Thioredoxin NRY95_04915 PF03922 OmpW family NRY95_04920 PF03922 OmpW family NRY95_04925 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NRY95_04925 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NRY95_04945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_04945 PF00672 HAMP domain NRY95_04945 PF16591 Helical bimodular sensor domain NRY95_04960 PF00162 Phosphoglycerate kinase NRY95_04965 PF13419 Haloacid dehalogenase-like hydrolase NRY95_04970 PF00224 Pyruvate kinase, barrel domain NRY95_04970 PF02887 Pyruvate kinase, alpha/beta domain NRY95_04975 PF00274 Fructose-bisphosphate aldolase class-I NRY95_04980 PF00486 Transcriptional regulatory protein, C terminal NRY95_04980 PF00072 Response regulator receiver domain NRY95_04985 PF00672 HAMP domain NRY95_04985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_04985 PF00512 His Kinase A (phospho-acceptor) domain NRY95_04995 PF08479 POTRA domain, ShlB-type NRY95_04995 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NRY95_05000 PF01661 Macro domain NRY95_05015 PF00860 Permease family NRY95_05030 PF01156 Inosine-uridine preferring nucleoside hydrolase NRY95_05035 PF01425 Amidase NRY95_05050 PF03466 LysR substrate binding domain NRY95_05050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_05060 PF01546 Peptidase family M20/M25/M40 NRY95_05060 PF07687 Peptidase dimerisation domain NRY95_05065 PF00266 Aminotransferase class-V NRY95_05085 PF13454 FAD-NAD(P)-binding NRY95_05090 PF00576 HIUase/Transthyretin family NRY95_05095 PF03450 CO dehydrogenase flavoprotein C-terminal domain NRY95_05095 PF00941 FAD binding domain in molybdopterin dehydrogenase NRY95_05100 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NRY95_05100 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NRY95_05110 PF00291 Pyridoxal-phosphate dependent enzyme NRY95_05115 PF10414 Sirohaem synthase dimerisation region NRY95_05115 PF14824 Sirohaem biosynthesis protein central NRY95_05115 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRY95_05120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_05120 PF03466 LysR substrate binding domain NRY95_05130 PF00072 Response regulator receiver domain NRY95_05130 PF01627 Hpt domain NRY95_05130 PF00512 His Kinase A (phospho-acceptor) domain NRY95_05130 PF00672 HAMP domain NRY95_05130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_05155 PF01507 Phosphoadenosine phosphosulfate reductase family NRY95_05160 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NRY95_05160 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NRY95_05165 PF00258 Flavodoxin NRY95_05165 PF00667 FAD binding domain NRY95_05165 PF00175 Oxidoreductase NAD-binding domain NRY95_05170 PF01507 Phosphoadenosine phosphosulfate reductase family NRY95_05175 PF00009 Elongation factor Tu GTP binding domain NRY95_05185 PF13439 Glycosyltransferase Family 4 NRY95_05185 PF00534 Glycosyl transferases group 1 NRY95_05195 PF13302 Acetyltransferase (GNAT) domain NRY95_05200 PF01235 Sodium:alanine symporter family NRY95_05210 PF00588 SpoU rRNA Methylase family NRY95_05210 PF08032 RNA 2'-O ribose methyltransferase substrate binding NRY95_05215 PF00135 Carboxylesterase family NRY95_05225 PF00356 Bacterial regulatory proteins, lacI family NRY95_05235 PF01741 Large-conductance mechanosensitive channel, MscL NRY95_05240 PF01557 Fumarylacetoacetate (FAA) hydrolase family NRY95_05255 PF03600 Citrate transporter NRY95_05255 PF02080 TrkA-C domain NRY95_05260 PF02390 Putative methyltransferase NRY95_05265 PF05690 Thiazole biosynthesis protein ThiG NRY95_05285 PF13356 Arm DNA-binding domain NRY95_05285 PF00589 Phage integrase family NRY95_05305 PF00005 ABC transporter NRY95_05305 PF00664 ABC transporter transmembrane region NRY95_05315 PF00291 Pyridoxal-phosphate dependent enzyme NRY95_05320 PF01053 Cys/Met metabolism PLP-dependent enzyme NRY95_05335 PF00528 Binding-protein-dependent transport system inner membrane component NRY95_05340 PF08402 TOBE domain NRY95_05340 PF00005 ABC transporter NRY95_05345 PF07286 Protein of unknown function (DUF1445) NRY95_05350 PF00557 Metallopeptidase family M24 NRY95_05355 PF09339 IclR helix-turn-helix domain NRY95_05355 PF01614 Bacterial transcriptional regulator NRY95_05375 PF07715 TonB-dependent Receptor Plug Domain NRY95_05375 PF00593 TonB dependent receptor NRY95_05425 PF01381 Helix-turn-helix NRY95_05485 PF04002 RadC-like JAB domain NRY95_05705 PF00145 C-5 cytosine-specific DNA methylase NRY95_05710 PF01751 Toprim domain NRY95_05710 PF01131 DNA topoisomerase NRY95_05760 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NRY95_05770 PF03466 LysR substrate binding domain NRY95_05770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_05810 PF00144 Beta-lactamase NRY95_05825 PF00210 Ferritin-like domain NRY95_05830 PF13493 Domain of unknown function (DUF4118) NRY95_05830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_05830 PF00512 His Kinase A (phospho-acceptor) domain NRY95_05830 PF00989 PAS fold NRY95_05830 PF08447 PAS fold NRY95_05830 PF13426 PAS domain NRY95_05835 PF00072 Response regulator receiver domain NRY95_05835 PF00196 Bacterial regulatory proteins, luxR family NRY95_05845 PF00561 alpha/beta hydrolase fold NRY95_05850 PF05506 Domain of unknown function (DUF756) NRY95_05850 PF04185 Phosphoesterase family NRY95_05855 PF07715 TonB-dependent Receptor Plug Domain NRY95_05855 PF07660 Secretin and TonB N terminus short domain NRY95_05855 PF00593 TonB dependent receptor NRY95_05860 PF08443 RimK-like ATP-grasp domain NRY95_05860 PF18030 RimK PreATP-grasp domain NRY95_05870 PF00072 Response regulator receiver domain NRY95_05870 PF00486 Transcriptional regulatory protein, C terminal NRY95_05875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_05875 PF00512 His Kinase A (phospho-acceptor) domain NRY95_05875 PF00989 PAS fold NRY95_05875 PF11808 Phosphate regulon sensor protein PhoR NRY95_05880 PF01121 Dephospho-CoA kinase NRY95_05885 PF06750 Bacterial Peptidase A24 N-terminal domain NRY95_05885 PF01478 Type IV leader peptidase family NRY95_05890 PF00482 Type II secretion system (T2SS), protein F NRY95_05895 PF00114 Pilin (bacterial filament) NRY95_05895 PF07963 Prokaryotic N-terminal methylation motif NRY95_05900 PF07963 Prokaryotic N-terminal methylation motif NRY95_05900 PF00114 Pilin (bacterial filament) NRY95_05910 PF00437 Type II/IV secretion system protein NRY95_05910 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NRY95_05915 PF00158 Sigma-54 interaction domain NRY95_05915 PF00072 Response regulator receiver domain NRY95_05915 PF02954 Bacterial regulatory protein, Fis family NRY95_05920 PF00512 His Kinase A (phospho-acceptor) domain NRY95_05920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_05925 PF00549 CoA-ligase NRY95_05925 PF08442 ATP-grasp domain NRY95_05930 PF00549 CoA-ligase NRY95_05930 PF02629 CoA binding domain NRY95_05935 PF01011 PQQ enzyme repeat NRY95_05940 PF00795 Carbon-nitrogen hydrolase NRY95_05940 PF02540 NAD synthase NRY95_05950 PF12867 DinB superfamily NRY95_05950 PF03781 Sulfatase-modifying factor enzyme 1 NRY95_05960 PF00528 Binding-protein-dependent transport system inner membrane component NRY95_05965 PF00005 ABC transporter NRY95_05975 PF13525 Outer membrane lipoprotein NRY95_05980 PF00849 RNA pseudouridylate synthase NRY95_05985 PF02578 Multi-copper polyphenol oxidoreductase laccase NRY95_06000 PF00672 HAMP domain NRY95_06000 PF02203 Tar ligand binding domain homologue NRY95_06000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_06005 PF01011 PQQ enzyme repeat NRY95_06010 PF00982 Glycosyltransferase family 20 NRY95_06015 PF00723 Glycosyl hydrolases family 15 NRY95_06020 PF02358 Trehalose-phosphatase NRY95_06025 PF00593 TonB dependent receptor NRY95_06025 PF07715 TonB-dependent Receptor Plug Domain NRY95_06035 PF00583 Acetyltransferase (GNAT) family NRY95_06060 PF10431 C-terminal, D2-small domain, of ClpB protein NRY95_06060 PF02861 Clp amino terminal domain, pathogenicity island component NRY95_06060 PF00004 ATPase family associated with various cellular activities (AAA) NRY95_06060 PF07724 AAA domain (Cdc48 subfamily) NRY95_06060 PF17871 AAA lid domain NRY95_06065 PF01053 Cys/Met metabolism PLP-dependent enzyme NRY95_06070 PF00593 TonB dependent receptor NRY95_06080 PF07769 psiF repeat NRY95_06090 PF01638 HxlR-like helix-turn-helix NRY95_06100 PF07690 Major Facilitator Superfamily NRY95_06105 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NRY95_06105 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NRY95_06110 PF06276 Ferric iron reductase FhuF-like transporter NRY95_06110 PF04183 IucA / IucC family NRY95_06115 PF07690 Major Facilitator Superfamily NRY95_06120 PF06276 Ferric iron reductase FhuF-like transporter NRY95_06120 PF04183 IucA / IucC family NRY95_06130 PF07660 Secretin and TonB N terminus short domain NRY95_06130 PF00593 TonB dependent receptor NRY95_06130 PF07715 TonB-dependent Receptor Plug Domain NRY95_06135 PF03328 HpcH/HpaI aldolase/citrate lyase family NRY95_06140 PF00999 Sodium/hydrogen exchanger family NRY95_06140 PF02254 TrkA-N domain NRY95_06155 PF07715 TonB-dependent Receptor Plug Domain NRY95_06155 PF00593 TonB dependent receptor NRY95_06200 PF00005 ABC transporter NRY95_06200 PF12848 ABC transporter NRY95_06220 PF03466 LysR substrate binding domain NRY95_06220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_06230 PF13472 GDSL-like Lipase/Acylhydrolase family NRY95_06230 PF07859 alpha/beta hydrolase fold NRY95_06235 PF05506 Domain of unknown function (DUF756) NRY95_06235 PF04185 Phosphoesterase family NRY95_06240 PF07715 TonB-dependent Receptor Plug Domain NRY95_06240 PF00593 TonB dependent receptor NRY95_06260 PF02938 GAD domain NRY95_06260 PF00152 tRNA synthetases class II (D, K and N) NRY95_06260 PF01336 OB-fold nucleic acid binding domain NRY95_06280 PF01709 Transcriptional regulator NRY95_06285 PF02075 Crossover junction endodeoxyribonuclease RuvC NRY95_06290 PF07499 RuvA, C-terminal domain NRY95_06290 PF01330 RuvA N terminal domain NRY95_06295 PF02705 K+ potassium transporter NRY95_06300 PF05496 Holliday junction DNA helicase RuvB P-loop domain NRY95_06300 PF05491 RuvB C-terminal winged helix domain NRY95_06300 PF17864 RuvB AAA lid domain NRY95_06305 PF03061 Thioesterase superfamily NRY95_06310 PF01618 MotA/TolQ/ExbB proton channel family NRY95_06315 PF02472 Biopolymer transport protein ExbD/TolR NRY95_06325 PF07676 WD40-like Beta Propeller Repeat NRY95_06325 PF04052 TolB amino-terminal domain NRY95_06330 PF00691 OmpA family NRY95_06340 PF04055 Radical SAM superfamily NRY95_06345 PF06508 Queuosine biosynthesis protein QueC NRY95_06355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_06355 PF03466 LysR substrate binding domain NRY95_06360 PF01810 LysE type translocator NRY95_06365 PF00593 TonB dependent receptor NRY95_06365 PF07715 TonB-dependent Receptor Plug Domain NRY95_06375 PF16124 RecQ zinc-binding NRY95_06375 PF00570 HRDC domain NRY95_06375 PF00271 Helicase conserved C-terminal domain NRY95_06375 PF00270 DEAD/DEAH box helicase NRY95_06375 PF09382 RQC domain NRY95_06385 PF00210 Ferritin-like domain NRY95_06390 PF00271 Helicase conserved C-terminal domain NRY95_06390 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NRY95_06390 PF11898 Domain of unknown function (DUF3418) NRY95_06390 PF04408 Helicase associated domain (HA2) NRY95_06390 PF00270 DEAD/DEAH box helicase NRY95_06395 PF00654 Voltage gated chloride channel NRY95_06405 PF04055 Radical SAM superfamily NRY95_06405 PF13186 Iron-sulfur cluster-binding domain NRY95_06410 PF05402 Coenzyme PQQ synthesis protein D (PqqD) NRY95_06415 PF03070 TENA/THI-4/PQQC family NRY95_06420 PF12706 Beta-lactamase superfamily domain NRY95_06425 PF13291 ACT domain NRY95_06425 PF02824 TGS domain NRY95_06425 PF04607 Region found in RelA / SpoT proteins NRY95_06435 PF00535 Glycosyl transferase family 2 NRY95_06440 PF14814 Bifunctional transglycosylase second domain NRY95_06440 PF00912 Transglycosylase NRY95_06440 PF00905 Penicillin binding protein transpeptidase domain NRY95_06450 PF13307 Helicase C-terminal domain NRY95_06450 PF04851 Type III restriction enzyme, res subunit NRY95_06455 PF00814 Glycoprotease family NRY95_06460 PF03747 ADP-ribosylglycohydrolase NRY95_06465 PF00593 TonB dependent receptor NRY95_06475 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NRY95_06475 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NRY95_06480 PF00072 Response regulator receiver domain NRY95_06485 PF00072 Response regulator receiver domain NRY95_06490 PF01584 CheW-like domain NRY95_06495 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NRY95_06495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_06500 PF00072 Response regulator receiver domain NRY95_06500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_06500 PF02895 Signal transducing histidine kinase, homodimeric domain NRY95_06500 PF01584 CheW-like domain NRY95_06500 PF01627 Hpt domain NRY95_06505 PF01339 CheB methylesterase NRY95_06505 PF00072 Response regulator receiver domain NRY95_06520 PF01112 Asparaginase NRY95_06525 PF03932 CutC family NRY95_06550 PF00324 Amino acid permease NRY95_06555 PF00196 Bacterial regulatory proteins, luxR family NRY95_06560 PF00561 alpha/beta hydrolase fold NRY95_06565 PF10008 Uncharacterized protein conserved in bacteria (DUF2251) NRY95_06590 PF00144 Beta-lactamase NRY95_06595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_06595 PF03466 LysR substrate binding domain NRY95_06605 PF00990 Diguanylate cyclase, GGDEF domain NRY95_06605 PF03707 Bacterial signalling protein N terminal repeat NRY95_06605 PF00563 EAL domain NRY95_06700 PF01301 Glycosyl hydrolases family 35 NRY95_06705 PF07971 Glycosyl hydrolase family 92 NRY95_06705 PF17678 Glycosyl hydrolase family 92 N-terminal domain NRY95_06715 PF14310 Fibronectin type III-like domain NRY95_06715 PF07691 PA14 domain NRY95_06715 PF00933 Glycosyl hydrolase family 3 N terminal domain NRY95_06715 PF01915 Glycosyl hydrolase family 3 C-terminal domain NRY95_06725 PF00728 Glycosyl hydrolase family 20, catalytic domain NRY95_06725 PF02838 Glycosyl hydrolase family 20, domain 2 NRY95_06725 PF07691 PA14 domain NRY95_06730 PF00704 Glycosyl hydrolases family 18 NRY95_06730 PF01476 LysM domain NRY95_06750 PF02685 Glucokinase NRY95_06760 PF04452 RNA methyltransferase NRY95_06765 PF00202 Aminotransferase class-III NRY95_06770 PF00293 NUDIX domain NRY95_06775 PF00459 Inositol monophosphatase family NRY95_06780 PF03819 MazG nucleotide pyrophosphohydrolase domain NRY95_06785 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NRY95_06795 PF01145 SPFH domain / Band 7 family NRY95_06795 PF16200 C-terminal region of band_7 NRY95_06805 PF01571 Aminomethyltransferase folate-binding domain NRY95_06805 PF08669 Glycine cleavage T-protein C-terminal barrel domain NRY95_06810 PF01597 Glycine cleavage H-protein NRY95_06825 PF00892 EamA-like transporter family NRY95_06830 PF00732 GMC oxidoreductase NRY95_06830 PF05199 GMC oxidoreductase NRY95_06850 PF02770 Acyl-CoA dehydrogenase, middle domain NRY95_06850 PF09317 Domain of unknown function (DUF1974) NRY95_06850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRY95_06850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRY95_06860 PF00440 Bacterial regulatory proteins, tetR family NRY95_06865 PF07715 TonB-dependent Receptor Plug Domain NRY95_06865 PF00593 TonB dependent receptor NRY95_06875 PF01430 Hsp33 protein NRY95_06880 PF00912 Transglycosylase NRY95_06885 PF00535 Glycosyl transferase family 2 NRY95_06890 PF00571 CBS domain NRY95_06895 PF05170 AsmA family NRY95_06900 PF03006 Haemolysin-III related NRY95_06905 PF00009 Elongation factor Tu GTP binding domain NRY95_06905 PF16658 Class II release factor RF3, C-terminal domain NRY95_06910 PF01551 Peptidase family M23 NRY95_06910 PF04225 Opacity-associated protein A LysM-like domain NRY95_06915 PF00561 alpha/beta hydrolase fold NRY95_06920 PF01053 Cys/Met metabolism PLP-dependent enzyme NRY95_06925 PF03447 Homoserine dehydrogenase, NAD binding domain NRY95_06925 PF00742 Homoserine dehydrogenase NRY95_06925 PF00696 Amino acid kinase family NRY95_06930 PF00561 alpha/beta hydrolase fold NRY95_06935 PF00990 Diguanylate cyclase, GGDEF domain NRY95_06940 PF03315 Serine dehydratase beta chain NRY95_06940 PF03313 Serine dehydratase alpha chain NRY95_06955 PF01292 Prokaryotic cytochrome b561 NRY95_06965 PF17149 Periplasmic sensor domain found in signal transduction proteins NRY95_06965 PF00672 HAMP domain NRY95_06965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_06965 PF00512 His Kinase A (phospho-acceptor) domain NRY95_06965 PF01627 Hpt domain NRY95_06965 PF00072 Response regulator receiver domain NRY95_06970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_06970 PF17149 Periplasmic sensor domain found in signal transduction proteins NRY95_06970 PF00512 His Kinase A (phospho-acceptor) domain NRY95_06970 PF01627 Hpt domain NRY95_06970 PF00072 Response regulator receiver domain NRY95_06970 PF00672 HAMP domain NRY95_06975 PF07690 Major Facilitator Superfamily NRY95_06990 PF01208 Uroporphyrinogen decarboxylase (URO-D) NRY95_07000 PF01761 3-dehydroquinate synthase NRY95_07005 PF01202 Shikimate kinase NRY95_07010 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NRY95_07010 PF01243 Pyridoxamine 5'-phosphate oxidase NRY95_07015 PF00583 Acetyltransferase (GNAT) family NRY95_07025 PF07690 Major Facilitator Superfamily NRY95_07030 PF09278 MerR, DNA binding NRY95_07030 PF00376 MerR family regulatory protein NRY95_07035 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRY95_07035 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRY95_07045 PF03807 NADP oxidoreductase coenzyme F420-dependent NRY95_07045 PF14748 Pyrroline-5-carboxylate reductase dimerisation NRY95_07060 PF01168 Alanine racemase, N-terminal domain NRY95_07065 PF00437 Type II/IV secretion system protein NRY95_07070 PF00437 Type II/IV secretion system protein NRY95_07080 PF00990 Diguanylate cyclase, GGDEF domain NRY95_07080 PF17151 Periplasmic sensor domain NRY95_07105 PF17990 L-Lysine epsilon oxidase N-terminal NRY95_07105 PF18417 L-lysine epsilon oxidase C-terminal domain NRY95_07120 PF13673 Acetyltransferase (GNAT) domain NRY95_07120 PF03352 Methyladenine glycosylase NRY95_07120 PF00117 Glutamine amidotransferase class-I NRY95_07120 PF13302 Acetyltransferase (GNAT) domain NRY95_07120 PF00958 GMP synthase C terminal domain NRY95_07130 PF02622 Uncharacterized ACR, COG1678 NRY95_07135 PF03652 Holliday junction resolvase NRY95_07140 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRY95_07140 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRY95_07150 PF00544 Pectate lyase NRY95_07155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_07155 PF02203 Tar ligand binding domain homologue NRY95_07155 PF00672 HAMP domain NRY95_07165 PF00324 Amino acid permease NRY95_07170 PF03600 Citrate transporter NRY95_07185 PF03448 MgtE intracellular N domain NRY95_07185 PF01769 Divalent cation transporter NRY95_07185 PF00571 CBS domain NRY95_07190 PF02896 PEP-utilising enzyme, TIM barrel domain NRY95_07190 PF00391 PEP-utilising enzyme, mobile domain NRY95_07190 PF05524 PEP-utilising enzyme, N-terminal NRY95_07195 PF00381 PTS HPr component phosphorylation site NRY95_07205 PF03668 P-loop ATPase protein family NRY95_07210 PF07475 HPr Serine kinase C-terminal domain NRY95_07210 PF02603 HPr Serine kinase N terminus NRY95_07215 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRY95_07220 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NRY95_07225 PF00309 Sigma-54 factor, Activator interacting domain (AID) NRY95_07225 PF04552 Sigma-54, DNA binding domain NRY95_07225 PF04963 Sigma-54 factor, core binding domain NRY95_07235 PF00005 ABC transporter NRY95_07255 PF01380 SIS domain NRY95_07255 PF00571 CBS domain NRY95_07265 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NRY95_07290 PF00551 Formyl transferase NRY95_07305 PF00586 AIR synthase related protein, N-terminal domain NRY95_07305 PF02769 AIR synthase related protein, C-terminal domain NRY95_07315 PF01594 AI-2E family transporter NRY95_07320 PF00308 Bacterial dnaA protein NRY95_07325 PF00483 Nucleotidyl transferase NRY95_07330 PF01636 Phosphotransferase enzyme family NRY95_07355 PF00072 Response regulator receiver domain NRY95_07355 PF00486 Transcriptional regulatory protein, C terminal NRY95_07365 PF00667 FAD binding domain NRY95_07365 PF00258 Flavodoxin NRY95_07365 PF00175 Oxidoreductase NAD-binding domain NRY95_07370 PF02424 ApbE family NRY95_07390 PF18331 PKHD-type hydroxylase C-terminal domain NRY95_07390 PF13640 2OG-Fe(II) oxygenase superfamily NRY95_07395 PF00593 TonB dependent receptor NRY95_07395 PF07715 TonB-dependent Receptor Plug Domain NRY95_07400 PF00355 Rieske [2Fe-2S] domain NRY95_07410 PF00266 Aminotransferase class-V NRY95_07415 PF01458 Uncharacterized protein family (UPF0051) NRY95_07420 PF00005 ABC transporter NRY95_07425 PF01458 Uncharacterized protein family (UPF0051) NRY95_07440 PF01965 DJ-1/PfpI family NRY95_07455 PF01476 LysM domain NRY95_07455 PF08525 Opacity-associated protein A N-terminal motif NRY95_07455 PF01551 Peptidase family M23 NRY95_07470 PF02566 OsmC-like protein NRY95_07480 PF02567 Phenazine biosynthesis-like protein NRY95_07485 PF01842 ACT domain NRY95_07485 PF00696 Amino acid kinase family NRY95_07495 PF08245 Mur ligase middle domain NRY95_07505 PF00348 Polyprenyl synthetase NRY95_07510 PF00436 Single-strand binding protein family NRY95_07540 PF00326 Prolyl oligopeptidase family NRY95_07545 PF00854 POT family NRY95_07550 PF03169 OPT oligopeptide transporter protein NRY95_07555 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region NRY95_07555 PF07676 WD40-like Beta Propeller Repeat NRY95_07555 PF00326 Prolyl oligopeptidase family NRY95_07575 PF13419 Haloacid dehalogenase-like hydrolase NRY95_07580 PF04328 Selenoprotein, putative NRY95_07585 PF02554 Carbon starvation protein CstA NRY95_07585 PF13722 5TM C-terminal transporter carbon starvation CstA NRY95_07590 PF05726 Pirin C-terminal cupin domain NRY95_07590 PF02678 Pirin NRY95_07600 PF02678 Pirin NRY95_07600 PF05726 Pirin C-terminal cupin domain NRY95_07615 PF04493 Endonuclease V NRY95_07620 PF00300 Histidine phosphatase superfamily (branch 1) NRY95_07630 PF07944 Beta-L-arabinofuranosidase, GH127 NRY95_07640 PF02311 AraC-like ligand binding domain NRY95_07640 PF12833 Helix-turn-helix domain NRY95_07645 PF13091 PLD-like domain NRY95_07650 PF01339 CheB methylesterase NRY95_07650 PF00072 Response regulator receiver domain NRY95_07655 PF03705 CheR methyltransferase, all-alpha domain NRY95_07655 PF01739 CheR methyltransferase, SAM binding domain NRY95_07660 PF00990 Diguanylate cyclase, GGDEF domain NRY95_07660 PF00360 Phytochrome region NRY95_07660 PF00563 EAL domain NRY95_07660 PF01590 GAF domain NRY95_07665 PF01584 CheW-like domain NRY95_07670 PF12729 Four helix bundle sensory module for signal transduction NRY95_07670 PF00672 HAMP domain NRY95_07670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_07675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_07675 PF00672 HAMP domain NRY95_07675 PF13426 PAS domain NRY95_07680 PF00672 HAMP domain NRY95_07680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_07680 PF02203 Tar ligand binding domain homologue NRY95_07685 PF01584 CheW-like domain NRY95_07685 PF09078 CheY binding NRY95_07685 PF02895 Signal transducing histidine kinase, homodimeric domain NRY95_07685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_07685 PF01627 Hpt domain NRY95_07695 PF17757 UvrB interaction domain NRY95_07695 PF03461 TRCF domain NRY95_07695 PF00271 Helicase conserved C-terminal domain NRY95_07695 PF00270 DEAD/DEAH box helicase NRY95_07695 PF02559 CarD-like/TRCF domain NRY95_07710 PF09234 Domain of unknown function (DUF1963) NRY95_07715 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NRY95_07720 PF00072 Response regulator receiver domain NRY95_07720 PF00486 Transcriptional regulatory protein, C terminal NRY95_07725 PF00672 HAMP domain NRY95_07725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_07725 PF00512 His Kinase A (phospho-acceptor) domain NRY95_07730 PF06123 Inner membrane protein CreD NRY95_07755 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRY95_07760 PF01475 Ferric uptake regulator family NRY95_07775 PF00460 Flagella basal body rod protein NRY95_07780 PF00460 Flagella basal body rod protein NRY95_07780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRY95_07785 PF03963 Flagellar hook capping protein - N-terminal region NRY95_07790 PF00460 Flagella basal body rod protein NRY95_07790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRY95_07790 PF07559 Flagellar basal body protein FlaE NRY95_07795 PF00460 Flagella basal body rod protein NRY95_07795 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRY95_07800 PF00460 Flagella basal body rod protein NRY95_07800 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRY95_07805 PF02107 Flagellar L-ring protein NRY95_07810 PF02119 Flagellar P-ring protein NRY95_07835 PF00512 His Kinase A (phospho-acceptor) domain NRY95_07835 PF00672 HAMP domain NRY95_07835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_07840 PF00072 Response regulator receiver domain NRY95_07840 PF00486 Transcriptional regulatory protein, C terminal NRY95_07845 PF00771 FHIPEP family NRY95_07850 PF01312 FlhB HrpN YscU SpaS Family NRY95_07855 PF01311 Bacterial export proteins, family 1 NRY95_07860 PF01313 Bacterial export proteins, family 3 NRY95_07865 PF00813 FliP family NRY95_07870 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NRY95_07880 PF00700 Bacterial flagellin C-terminal helical region NRY95_07880 PF00669 Bacterial flagellin N-terminal helical region NRY95_07885 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NRY95_07885 PF10135 Rod binding protein NRY95_07900 PF00691 OmpA family NRY95_07900 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRY95_07905 PF01618 MotA/TolQ/ExbB proton channel family NRY95_07910 PF04542 Sigma-70 region 2 NRY95_07910 PF04545 Sigma-70, region 4 NRY95_07945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRY95_07945 PF18269 T3SS EscN ATPase C-terminal domain NRY95_07955 PF01706 FliG C-terminal domain NRY95_07955 PF14841 FliG middle domain NRY95_07955 PF14842 FliG N-terminal domain NRY95_07960 PF01514 Secretory protein of YscJ/FliF family NRY95_07960 PF08345 Flagellar M-ring protein C-terminal NRY95_07970 PF00440 Bacterial regulatory proteins, tetR family NRY95_07975 PF00529 HlyD membrane-fusion protein of T1SS NRY95_07975 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRY95_07980 PF00873 AcrB/AcrD/AcrF family NRY95_07985 PF02321 Outer membrane efflux protein NRY95_08005 PF06224 Winged helix DNA-binding domain NRY95_08010 PF00561 alpha/beta hydrolase fold NRY95_08025 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NRY95_08025 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NRY95_08030 PF00941 FAD binding domain in molybdopterin dehydrogenase NRY95_08030 PF03450 CO dehydrogenase flavoprotein C-terminal domain NRY95_08035 PF10518 TAT (twin-arginine translocation) pathway signal sequence NRY95_08035 PF01799 [2Fe-2S] binding domain NRY95_08035 PF00111 2Fe-2S iron-sulfur cluster binding domain NRY95_08045 PF01810 LysE type translocator NRY95_08055 PF00593 TonB dependent receptor NRY95_08055 PF07715 TonB-dependent Receptor Plug Domain NRY95_08070 PF00654 Voltage gated chloride channel NRY95_08085 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NRY95_08085 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NRY95_08090 PF00730 HhH-GPD superfamily base excision DNA repair protein NRY95_08090 PF06029 AlkA N-terminal domain NRY95_08090 PF02805 Metal binding domain of Ada NRY95_08090 PF12833 Helix-turn-helix domain NRY95_08115 PF01494 FAD binding domain NRY95_08140 PF00271 Helicase conserved C-terminal domain NRY95_08140 PF00270 DEAD/DEAH box helicase NRY95_08140 PF03880 DbpA RNA binding domain NRY95_08145 PF01479 S4 domain NRY95_08145 PF00849 RNA pseudouridylate synthase NRY95_08150 PF00990 Diguanylate cyclase, GGDEF domain NRY95_08160 PF03812 2-keto-3-deoxygluconate permease NRY95_08170 PF03737 Aldolase/RraA NRY95_08175 PF00144 Beta-lactamase NRY95_08190 PF00581 Rhodanese-like domain NRY95_08195 PF12833 Helix-turn-helix domain NRY95_08200 PF00005 ABC transporter NRY95_08200 PF00664 ABC transporter transmembrane region NRY95_08235 PF01022 Bacterial regulatory protein, arsR family NRY95_08240 PF03466 LysR substrate binding domain NRY95_08240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_08260 PF00196 Bacterial regulatory proteins, luxR family NRY95_08260 PF03472 Autoinducer binding domain NRY95_08290 PF03653 Uncharacterised protein family (UPF0093) NRY95_08300 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NRY95_08305 PF14579 Helix-hairpin-helix motif NRY95_08305 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NRY95_08305 PF07733 Bacterial DNA polymerase III alpha NTPase domain NRY95_08305 PF02811 PHP domain NRY95_08305 PF01336 OB-fold nucleic acid binding domain NRY95_08310 PF01351 Ribonuclease HII NRY95_08315 PF02684 Lipid-A-disaccharide synthetase NRY95_08320 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NRY95_08320 PF00132 Bacterial transferase hexapeptide (six repeats) NRY95_08325 PF07977 FabA-like domain NRY95_08330 PF00132 Bacterial transferase hexapeptide (six repeats) NRY95_08330 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NRY95_08335 PF01103 Surface antigen NRY95_08335 PF07244 Surface antigen variable number repeat NRY95_08340 PF17820 PDZ domain NRY95_08340 PF02163 Peptidase family M50 NRY95_08345 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NRY95_08345 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NRY95_08345 PF13288 DXP reductoisomerase C-terminal domain NRY95_08355 PF01255 Putative undecaprenyl diphosphate synthase NRY95_08360 PF01765 Ribosome recycling factor NRY95_08365 PF00696 Amino acid kinase family NRY95_08370 PF00990 Diguanylate cyclase, GGDEF domain NRY95_08375 PF00889 Elongation factor TS NRY95_08380 PF00318 Ribosomal protein S2 NRY95_08415 PF00557 Metallopeptidase family M24 NRY95_08420 PF01909 Nucleotidyltransferase domain NRY95_08420 PF01966 HD domain NRY95_08420 PF08335 GlnD PII-uridylyltransferase NRY95_08425 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NRY95_08425 PF14602 Hexapeptide repeat of succinyl-transferase NRY95_08425 PF00132 Bacterial transferase hexapeptide (six repeats) NRY95_08430 PF03960 ArsC family NRY95_08435 PF01546 Peptidase family M20/M25/M40 NRY95_08435 PF07687 Peptidase dimerisation domain NRY95_08440 PF13537 Glutamine amidotransferase domain NRY95_08440 PF00733 Asparagine synthase NRY95_08450 PF01804 Penicillin amidase NRY95_08455 PF00210 Ferritin-like domain NRY95_08460 PF03989 DNA gyrase C-terminal domain, beta-propeller NRY95_08460 PF00521 DNA gyrase/topoisomerase IV, subunit A NRY95_08475 PF02321 Outer membrane efflux protein NRY95_08480 PF00529 HlyD membrane-fusion protein of T1SS NRY95_08480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRY95_08485 PF07690 Major Facilitator Superfamily NRY95_08520 PF06903 VirK protein NRY95_08530 PF00773 RNB domain NRY95_08530 PF08206 Ribonuclease B OB domain NRY95_08530 PF08461 Ribonuclease R winged-helix domain NRY95_08530 PF17876 Cold shock domain NRY95_08530 PF00575 S1 RNA binding domain NRY95_08540 PF08032 RNA 2'-O ribose methyltransferase substrate binding NRY95_08540 PF00588 SpoU rRNA Methylase family NRY95_08545 PF02321 Outer membrane efflux protein NRY95_08550 PF02687 FtsX-like permease family NRY95_08550 PF00005 ABC transporter NRY95_08550 PF12704 MacB-like periplasmic core domain NRY95_08555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRY95_08560 PF00072 Response regulator receiver domain NRY95_08560 PF00486 Transcriptional regulatory protein, C terminal NRY95_08565 PF00512 His Kinase A (phospho-acceptor) domain NRY95_08565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_08565 PF00672 HAMP domain NRY95_08570 PF00990 Diguanylate cyclase, GGDEF domain NRY95_08570 PF00072 Response regulator receiver domain NRY95_08580 PF00929 Exonuclease NRY95_08590 PF05114 Protein of unknown function (DUF692) NRY95_08605 PF01895 PhoU domain NRY95_08610 PF00005 ABC transporter NRY95_08615 PF00528 Binding-protein-dependent transport system inner membrane component NRY95_08620 PF00528 Binding-protein-dependent transport system inner membrane component NRY95_08625 PF12849 PBP superfamily domain NRY95_08630 PF12849 PBP superfamily domain NRY95_08645 PF00484 Carbonic anhydrase NRY95_08650 PF00916 Sulfate permease family NRY95_08650 PF01740 STAS domain NRY95_08655 PF00730 HhH-GPD superfamily base excision DNA repair protein NRY95_08655 PF00633 Helix-hairpin-helix motif NRY95_08655 PF10576 Iron-sulfur binding domain of endonuclease III NRY95_08665 PF00378 Enoyl-CoA hydratase/isomerase NRY95_08670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRY95_08670 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRY95_08675 PF00293 NUDIX domain NRY95_08680 PF00581 Rhodanese-like domain NRY95_08710 PF12848 ABC transporter NRY95_08710 PF00005 ABC transporter NRY95_08715 PF02926 THUMP domain NRY95_08715 PF10672 S-adenosylmethionine-dependent methyltransferase NRY95_08715 PF01170 Putative RNA methylase family UPF0020 NRY95_08720 PF00072 Response regulator receiver domain NRY95_08725 PF00672 HAMP domain NRY95_08725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_08725 PF00512 His Kinase A (phospho-acceptor) domain NRY95_08725 PF01627 Hpt domain NRY95_08725 PF00072 Response regulator receiver domain NRY95_08725 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRY95_08730 PF04286 Protein of unknown function (DUF445) NRY95_08755 PF00171 Aldehyde dehydrogenase family NRY95_08760 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NRY95_08760 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NRY95_08765 PF00202 Aminotransferase class-III NRY95_08770 PF01381 Helix-turn-helix NRY95_08770 PF07883 Cupin domain NRY95_08775 PF00171 Aldehyde dehydrogenase family NRY95_08790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_08790 PF03459 TOBE domain NRY95_08795 PF07690 Major Facilitator Superfamily NRY95_08800 PF02634 FdhD/NarQ family NRY95_08805 PF00384 Molybdopterin oxidoreductase NRY95_08805 PF01568 Molydopterin dinucleotide binding domain NRY95_08815 PF07690 Major Facilitator Superfamily NRY95_08815 PF00083 Sugar (and other) transporter NRY95_08820 PF00072 Response regulator receiver domain NRY95_08820 PF00990 Diguanylate cyclase, GGDEF domain NRY95_08825 PF01266 FAD dependent oxidoreductase NRY95_08830 PF00120 Glutamine synthetase, catalytic domain NRY95_08835 PF07722 Peptidase C26 NRY95_08840 PF00120 Glutamine synthetase, catalytic domain NRY95_08845 PF00202 Aminotransferase class-III NRY95_08850 PF13416 Bacterial extracellular solute-binding protein NRY95_08855 PF13416 Bacterial extracellular solute-binding protein NRY95_08865 PF13533 Biotin-lipoyl like NRY95_08870 PF07690 Major Facilitator Superfamily NRY95_08875 PF02321 Outer membrane efflux protein NRY95_08880 PF00005 ABC transporter NRY95_08880 PF08402 TOBE domain NRY95_08885 PF00528 Binding-protein-dependent transport system inner membrane component NRY95_08890 PF00528 Binding-protein-dependent transport system inner membrane component NRY95_08895 PF00171 Aldehyde dehydrogenase family NRY95_08910 PF00571 CBS domain NRY95_08910 PF03471 Transporter associated domain NRY95_08920 PF02130 Uncharacterized protein family UPF0054 NRY95_08925 PF02562 PhoH-like protein NRY95_08945 PF00919 Uncharacterized protein family UPF0004 NRY95_08945 PF01938 TRAM domain NRY95_08945 PF04055 Radical SAM superfamily NRY95_08950 PF00043 Glutathione S-transferase, C-terminal domain NRY95_08950 PF02798 Glutathione S-transferase, N-terminal domain NRY95_08960 PF01464 Transglycosylase SLT domain NRY95_08965 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NRY95_08965 PF00355 Rieske [2Fe-2S] domain NRY95_08970 PF00033 Cytochrome b/b6/petB NRY95_08970 PF00032 Cytochrome b(C-terminal)/b6/petD NRY95_08980 PF02167 Cytochrome C1 family NRY95_08985 PF00043 Glutathione S-transferase, C-terminal domain NRY95_08985 PF02798 Glutathione S-transferase, N-terminal domain NRY95_08990 PF04386 Stringent starvation protein B NRY95_09005 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NRY95_09005 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NRY95_09015 PF00731 AIR carboxylase NRY95_09020 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NRY95_09020 PF02222 ATP-grasp domain NRY95_09025 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NRY95_09025 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NRY95_09030 PF00462 Glutaredoxin NRY95_09035 PF00106 short chain dehydrogenase NRY95_09040 PF01914 MarC family integral membrane protein NRY95_09050 PF00593 TonB dependent receptor NRY95_09055 PF11892 Domain of unknown function (DUF3412) NRY95_09055 PF03641 Possible lysine decarboxylase NRY95_09055 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases NRY95_09060 PF06580 Histidine kinase NRY95_09060 PF07694 5TMR of 5TMR-LYT NRY95_09085 PF05567 Neisseria PilC beta-propeller domain NRY95_09090 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor NRY95_09090 PF07963 Prokaryotic N-terminal methylation motif NRY95_09105 PF12344 Ultra-violet resistance protein B NRY95_09105 PF04851 Type III restriction enzyme, res subunit NRY95_09105 PF00271 Helicase conserved C-terminal domain NRY95_09105 PF17757 UvrB interaction domain NRY95_09105 PF02151 UvrB/uvrC motif NRY95_09120 PF02534 Type IV secretory system Conjugative DNA transfer NRY95_09130 PF04335 VirB8 protein NRY95_09140 PF03743 Bacterial conjugation TrbI-like protein NRY95_09145 PF00437 Type II/IV secretion system protein NRY95_09150 PF01464 Transglycosylase SLT domain NRY95_09155 PF04956 TrbC/VIRB2 family NRY95_09160 PF05101 Type IV secretory pathway, VirB3-like protein NRY95_09165 PF03135 CagE, TrbE, VirB family, component of type IV transporter system NRY95_09200 PF00128 Alpha amylase, catalytic domain NRY95_09210 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation NRY95_09210 PF14508 Glycosyl-hydrolase 97 N-terminal NRY95_09210 PF10566 Glycoside hydrolase 97 NRY95_09225 PF00128 Alpha amylase, catalytic domain NRY95_09225 PF00686 Starch binding domain NRY95_09245 PF00356 Bacterial regulatory proteins, lacI family NRY95_09250 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NRY95_09250 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRY95_09250 PF03129 Anticodon binding domain NRY95_09250 PF02824 TGS domain NRY95_09255 PF00707 Translation initiation factor IF-3, C-terminal domain NRY95_09255 PF05198 Translation initiation factor IF-3, N-terminal domain NRY95_09260 PF01632 Ribosomal protein L35 NRY95_09265 PF00453 Ribosomal protein L20 NRY95_09270 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NRY95_09270 PF01409 tRNA synthetases class II core domain (F) NRY95_09275 PF03147 Ferredoxin-fold anticodon binding domain NRY95_09275 PF01588 Putative tRNA binding domain NRY95_09275 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NRY95_09275 PF03483 B3/4 domain NRY95_09275 PF03484 tRNA synthetase B5 domain NRY95_09280 PF00216 Bacterial DNA-binding protein NRY95_09285 PF13411 MerR HTH family regulatory protein NRY95_09305 PF02397 Bacterial sugar transferase NRY95_09320 PF00534 Glycosyl transferases group 1 NRY95_09320 PF13439 Glycosyltransferase Family 4 NRY95_09330 PF14667 Polysaccharide biosynthesis C-terminal domain NRY95_09345 PF03808 Glycosyl transferase WecB/TagA/CpsF family NRY95_09360 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NRY95_09360 PF02779 Transketolase, pyrimidine binding domain NRY95_09360 PF02780 Transketolase, C-terminal domain NRY95_09370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRY95_09370 PF12806 Acetyl-CoA dehydrogenase C-terminal like NRY95_09370 PF02770 Acyl-CoA dehydrogenase, middle domain NRY95_09370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRY95_09375 PF13533 Biotin-lipoyl like NRY95_09385 PF04632 Fusaric acid resistance protein family NRY95_09390 PF01047 MarR family NRY95_09410 PF08212 Lipocalin-like domain NRY95_09420 PF13742 OB-fold nucleic acid binding domain NRY95_09420 PF02601 Exonuclease VII, large subunit NRY95_09425 PF08331 Domain of unknown function (DUF1730) NRY95_09430 PF01256 Carbohydrate kinase NRY95_09430 PF03853 YjeF-related protein N-terminus NRY95_09435 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NRY95_09440 PF11741 AMIN domain NRY95_09440 PF01520 N-acetylmuramoyl-L-alanine amidase NRY95_09445 PF08676 MutL C terminal dimerisation domain NRY95_09445 PF01119 DNA mismatch repair protein, C-terminal domain NRY95_09460 PF05233 PHB accumulation regulatory domain NRY95_09460 PF07879 PHB/PHA accumulation regulator DNA-binding domain NRY95_09470 PF00106 short chain dehydrogenase NRY95_09475 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRY95_09480 PF01435 Peptidase family M48 NRY95_09485 PF00563 EAL domain NRY95_09485 PF00990 Diguanylate cyclase, GGDEF domain NRY95_09485 PF00072 Response regulator receiver domain NRY95_09495 PF07152 YaeQ protein NRY95_09500 PF00849 RNA pseudouridylate synthase NRY95_09505 PF00313 'Cold-shock' DNA-binding domain NRY95_09510 PF02798 Glutathione S-transferase, N-terminal domain NRY95_09510 PF00043 Glutathione S-transferase, C-terminal domain NRY95_09520 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NRY95_09530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRY95_09530 PF00529 HlyD membrane-fusion protein of T1SS NRY95_09535 PF00873 AcrB/AcrD/AcrF family NRY95_09540 PF00156 Phosphoribosyl transferase domain NRY95_09555 PF03880 DbpA RNA binding domain NRY95_09555 PF00270 DEAD/DEAH box helicase NRY95_09555 PF00271 Helicase conserved C-terminal domain NRY95_09560 PF12848 ABC transporter NRY95_09560 PF00005 ABC transporter NRY95_09560 PF16326 ABC transporter C-terminal domain NRY95_09570 PF00545 ribonuclease NRY95_09575 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NRY95_09575 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NRY95_09580 PF06719 AraC-type transcriptional regulator N-terminus NRY95_09580 PF12833 Helix-turn-helix domain NRY95_09590 PF07730 Histidine kinase NRY95_09590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_09590 PF13492 GAF domain NRY95_09590 PF13185 GAF domain NRY95_09595 PF00196 Bacterial regulatory proteins, luxR family NRY95_09595 PF00072 Response regulator receiver domain NRY95_09605 PF14310 Fibronectin type III-like domain NRY95_09605 PF00933 Glycosyl hydrolase family 3 N terminal domain NRY95_09605 PF01915 Glycosyl hydrolase family 3 C-terminal domain NRY95_09615 PF00854 POT family NRY95_09640 PF01047 MarR family NRY95_09645 PF01432 Peptidase family M3 NRY95_09650 PF01979 Amidohydrolase family NRY95_09650 PF13382 Adenine deaminase C-terminal domain NRY95_09655 PF00255 Glutathione peroxidase NRY95_09660 PF00175 Oxidoreductase NAD-binding domain NRY95_09660 PF00970 Oxidoreductase FAD-binding domain NRY95_09670 PF00005 ABC transporter NRY95_09685 PF02627 Carboxymuconolactone decarboxylase family NRY95_09695 PF04542 Sigma-70 region 2 NRY95_09695 PF08281 Sigma-70, region 4 NRY95_09700 PF05681 Fumarate hydratase (Fumerase) NRY95_09700 PF05683 Fumarase C-terminus NRY95_09710 PF02253 Phospholipase A1 NRY95_09720 PF00313 'Cold-shock' DNA-binding domain NRY95_09735 PF00899 ThiF family NRY95_09740 PF01026 TatD related DNase NRY95_09755 PF02770 Acyl-CoA dehydrogenase, middle domain NRY95_09755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRY95_09755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRY95_09765 PF03358 NADPH-dependent FMN reductase NRY95_09770 PF00772 DnaB-like helicase N terminal domain NRY95_09770 PF03796 DnaB-like helicase C terminal domain NRY95_09780 PF08448 PAS fold NRY95_09780 PF08447 PAS fold NRY95_09780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_09785 PF00158 Sigma-54 interaction domain NRY95_09785 PF00072 Response regulator receiver domain NRY95_09785 PF02954 Bacterial regulatory protein, Fis family NRY95_09790 PF00072 Response regulator receiver domain NRY95_09790 PF00158 Sigma-54 interaction domain NRY95_09790 PF02954 Bacterial regulatory protein, Fis family NRY95_09795 PF00875 DNA photolyase NRY95_09795 PF03441 FAD binding domain of DNA photolyase NRY95_09800 PF06974 Protein of unknown function (DUF1298) NRY95_09800 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NRY95_09805 PF00691 OmpA family NRY95_09805 PF05736 OprF membrane domain NRY95_09810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_09810 PF03466 LysR substrate binding domain NRY95_09825 PF00529 HlyD membrane-fusion protein of T1SS NRY95_09825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRY95_09830 PF00873 AcrB/AcrD/AcrF family NRY95_09835 PF00106 short chain dehydrogenase NRY95_09840 PF02321 Outer membrane efflux protein NRY95_09845 PF00990 Diguanylate cyclase, GGDEF domain NRY95_09845 PF08448 PAS fold NRY95_09850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_09850 PF03466 LysR substrate binding domain NRY95_09855 PF02525 Flavodoxin-like fold NRY95_09870 PF00082 Subtilase family NRY95_09875 PF01668 SmpB protein NRY95_09885 PF03658 RnfH family Ubiquitin NRY95_09890 PF04355 SmpA / OmlA family NRY95_09895 PF01475 Ferric uptake regulator family NRY95_09900 PF02463 RecF/RecN/SMC N terminal domain NRY95_09905 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding NRY95_09905 PF01628 HrcA protein C terminal domain NRY95_09910 PF01025 GrpE NRY95_09915 PF00012 Hsp70 protein NRY95_09920 PF00684 DnaJ central domain NRY95_09920 PF01556 DnaJ C terminal domain NRY95_09920 PF00226 DnaJ domain NRY95_09925 PF08543 Phosphomethylpyrimidine kinase NRY95_09930 PF01817 Chorismate mutase type II NRY95_09930 PF02153 Prephenate dehydrogenase NRY95_09940 PF00005 ABC transporter NRY95_09940 PF00664 ABC transporter transmembrane region NRY95_09945 PF01205 Uncharacterized protein family UPF0029 NRY95_09955 PF08281 Sigma-70, region 4 NRY95_09955 PF04542 Sigma-70 region 2 NRY95_09960 PF03707 Bacterial signalling protein N terminal repeat NRY95_09960 PF00990 Diguanylate cyclase, GGDEF domain NRY95_09960 PF00563 EAL domain NRY95_09965 PF03641 Possible lysine decarboxylase NRY95_09970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRY95_09970 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRY95_09975 PF02817 e3 binding domain NRY95_09975 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRY95_09975 PF00364 Biotin-requiring enzyme NRY95_09980 PF16078 2-oxoglutarate dehydrogenase N-terminus NRY95_09980 PF00676 Dehydrogenase E1 component NRY95_09980 PF16870 2-oxoglutarate dehydrogenase C-terminal NRY95_09980 PF02779 Transketolase, pyrimidine binding domain NRY95_09990 PF08007 Cupin superfamily protein NRY95_09995 PF00223 Photosystem I psaA/psaB protein NRY95_09995 PF00691 OmpA family NRY95_10005 PF08328 Adenylosuccinate lyase C-terminal NRY95_10005 PF00206 Lyase NRY95_10015 PF10415 Fumarase C C-terminus NRY95_10015 PF00206 Lyase NRY95_10040 PF00005 ABC transporter NRY95_10045 PF00392 Bacterial regulatory proteins, gntR family NRY95_10055 PF00255 Glutathione peroxidase NRY95_10060 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRY95_10060 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NRY95_10065 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NRY95_10065 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NRY95_10065 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NRY95_10070 PF04102 SlyX NRY95_10080 PF01757 Acyltransferase family NRY95_10090 PF02607 B12 binding domain NRY95_10090 PF02965 Vitamin B12 dependent methionine synthase, activation domain NRY95_10090 PF02310 B12 binding domain NRY95_10090 PF00809 Pterin binding enzyme NRY95_10090 PF02574 Homocysteine S-methyltransferase NRY95_10095 PF00809 Pterin binding enzyme NRY95_10095 PF02574 Homocysteine S-methyltransferase NRY95_10100 PF01209 ubiE/COQ5 methyltransferase family NRY95_10105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRY95_10105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRY95_10105 PF02770 Acyl-CoA dehydrogenase, middle domain NRY95_10110 PF00873 AcrB/AcrD/AcrF family NRY95_10115 PF00529 HlyD membrane-fusion protein of T1SS NRY95_10115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRY95_10125 PF05088 Bacterial NAD-glutamate dehydrogenase NRY95_10130 PF01513 ATP-NAD kinase NRY95_10155 PF00929 Exonuclease NRY95_10155 PF08411 Exonuclease C-terminal NRY95_10160 PF01494 FAD binding domain NRY95_10165 PF00266 Aminotransferase class-V NRY95_10175 PF06052 3-hydroxyanthranilic acid dioxygenase NRY95_10180 PF00484 Carbonic anhydrase NRY95_10200 PF01336 OB-fold nucleic acid binding domain NRY95_10200 PF00152 tRNA synthetases class II (D, K and N) NRY95_10205 PF01521 Iron-sulphur cluster biosynthesis NRY95_10210 PF01648 4'-phosphopantetheinyl transferase superfamily NRY95_10210 PF17837 4'-phosphopantetheinyl transferase N-terminal domain NRY95_10215 PF01250 Ribosomal protein S6 NRY95_10220 PF01084 Ribosomal protein S18 NRY95_10225 PF01281 Ribosomal protein L9, N-terminal domain NRY95_10225 PF03948 Ribosomal protein L9, C-terminal domain NRY95_10230 PF02463 RecF/RecN/SMC N terminal domain NRY95_10235 PF04354 ZipA, C-terminal FtsZ-binding domain NRY95_10240 PF00155 Aminotransferase class I and II NRY95_10245 PF12826 Helix-hairpin-helix motif NRY95_10245 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NRY95_10245 PF03120 NAD-dependent DNA ligase OB-fold domain NRY95_10245 PF01653 NAD-dependent DNA ligase adenylation domain NRY95_10245 PF00533 BRCA1 C Terminus (BRCT) domain NRY95_10250 PF00152 tRNA synthetases class II (D, K and N) NRY95_10260 PF01008 Initiation factor 2 subunit family NRY95_10265 PF03989 DNA gyrase C-terminal domain, beta-propeller NRY95_10265 PF00521 DNA gyrase/topoisomerase IV, subunit A NRY95_10270 PF13360 PQQ-like domain NRY95_10320 PF01175 Urocanase Rossmann-like domain NRY95_10320 PF17392 Urocanase C-terminal domain NRY95_10320 PF17391 Urocanase N-terminal domain NRY95_10330 PF00221 Aromatic amino acid lyase NRY95_10335 PF01979 Amidohydrolase family NRY95_10350 PF00106 short chain dehydrogenase NRY95_10385 PF01794 Ferric reductase like transmembrane component NRY95_10390 PF00174 Oxidoreductase molybdopterin binding domain NRY95_10395 PF00266 Aminotransferase class-V NRY95_10400 PF01817 Chorismate mutase type II NRY95_10400 PF00800 Prephenate dehydratase NRY95_10400 PF01842 ACT domain NRY95_10405 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NRY95_10415 PF03544 Gram-negative bacterial TonB protein C-terminal NRY95_10420 PF02403 Seryl-tRNA synthetase N-terminal domain NRY95_10420 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NRY95_10425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_10425 PF03466 LysR substrate binding domain NRY95_10470 PF00196 Bacterial regulatory proteins, luxR family NRY95_10470 PF00072 Response regulator receiver domain NRY95_10475 PF12111 Polyribonucleotide phosphorylase C terminal NRY95_10475 PF10150 Ribonuclease E/G family NRY95_10475 PF00575 S1 RNA binding domain NRY95_10480 PF00849 RNA pseudouridylate synthase NRY95_10480 PF01479 S4 domain NRY95_10485 PF11737 Protein of unknown function (DUF3300) NRY95_10490 PF02535 ZIP Zinc transporter NRY95_10500 PF01329 Pterin 4 alpha carbinolamine dehydratase NRY95_10505 PF01106 NifU-like domain NRY95_10515 PF00034 Cytochrome c NRY95_10520 PF00034 Cytochrome c NRY95_10525 PF00529 HlyD membrane-fusion protein of T1SS NRY95_10525 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRY95_10530 PF00873 AcrB/AcrD/AcrF family NRY95_10535 PF00873 AcrB/AcrD/AcrF family NRY95_10545 PF00795 Carbon-nitrogen hydrolase NRY95_10550 PF04371 Porphyromonas-type peptidyl-arginine deiminase NRY95_10560 PF00444 Ribosomal protein L36 NRY95_10565 PF02224 Cytidylate kinase NRY95_10570 PF00575 S1 RNA binding domain NRY95_10575 PF00216 Bacterial DNA-binding protein NRY95_10585 PF18073 Rubredoxin metal binding domain NRY95_10590 PF00953 Glycosyl transferase family 4 NRY95_10595 PF02719 Polysaccharide biosynthesis protein NRY95_10600 PF00483 Nucleotidyl transferase NRY95_10605 PF00108 Thiolase, N-terminal domain NRY95_10605 PF02803 Thiolase, C-terminal domain NRY95_10610 PF00378 Enoyl-CoA hydratase/isomerase NRY95_10610 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NRY95_10610 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NRY95_10620 PF00334 Nucleoside diphosphate kinase NRY95_10625 PF04055 Radical SAM superfamily NRY95_10635 PF13464 Domain of unknown function (DUF4115) NRY95_10645 PF01011 PQQ enzyme repeat NRY95_10645 PF13360 PQQ-like domain NRY95_10650 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NRY95_10650 PF01926 50S ribosome-binding GTPase NRY95_10655 PF12804 MobA-like NTP transferase domain NRY95_10660 PF03454 MoeA C-terminal region (domain IV) NRY95_10660 PF03453 MoeA N-terminal region (domain I and II) NRY95_10660 PF00994 Probable molybdopterin binding domain NRY95_10665 PF00899 ThiF family NRY95_10670 PF00999 Sodium/hydrogen exchanger family NRY95_10670 PF02254 TrkA-N domain NRY95_10675 PF12146 Serine aminopeptidase, S33 NRY95_10685 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NRY95_10685 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NRY95_10690 PF00571 CBS domain NRY95_10690 PF00478 IMP dehydrogenase / GMP reductase domain NRY95_10695 PF00117 Glutamine amidotransferase class-I NRY95_10695 PF00958 GMP synthase C terminal domain NRY95_10695 PF02540 NAD synthase NRY95_10700 PF06745 KaiC NRY95_10705 PF08448 PAS fold NRY95_10705 PF13188 PAS domain NRY95_10705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_10705 PF00512 His Kinase A (phospho-acceptor) domain NRY95_10705 PF00072 Response regulator receiver domain NRY95_10710 PF01566 Natural resistance-associated macrophage protein NRY95_10715 PF01325 Iron dependent repressor, N-terminal DNA binding domain NRY95_10715 PF02742 Iron dependent repressor, metal binding and dimerisation domain NRY95_10720 PF14437 MafB19-like deaminase NRY95_10725 PF00929 Exonuclease NRY95_10730 PF05552 Conserved TM helix NRY95_10730 PF00924 Mechanosensitive ion channel NRY95_10735 PF02896 PEP-utilising enzyme, TIM barrel domain NRY95_10735 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NRY95_10735 PF00391 PEP-utilising enzyme, mobile domain NRY95_10740 PF03618 Kinase/pyrophosphorylase NRY95_10760 PF01066 CDP-alcohol phosphatidyltransferase NRY95_10770 PF00561 alpha/beta hydrolase fold NRY95_10790 PF01266 FAD dependent oxidoreductase NRY95_10790 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NRY95_10800 PF00072 Response regulator receiver domain NRY95_10800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_10800 PF13426 PAS domain NRY95_10805 PF09371 Tex-like protein N-terminal domain NRY95_10805 PF17674 HHH domain NRY95_10805 PF16921 Tex protein YqgF-like domain NRY95_10805 PF00575 S1 RNA binding domain NRY95_10810 PF17149 Periplasmic sensor domain found in signal transduction proteins NRY95_10810 PF00072 Response regulator receiver domain NRY95_10810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_10810 PF01627 Hpt domain NRY95_10810 PF00672 HAMP domain NRY95_10810 PF00512 His Kinase A (phospho-acceptor) domain NRY95_10850 PF00873 AcrB/AcrD/AcrF family NRY95_10855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRY95_10865 PF02321 Outer membrane efflux protein NRY95_10870 PF00072 Response regulator receiver domain NRY95_10870 PF00486 Transcriptional regulatory protein, C terminal NRY95_10875 PF00512 His Kinase A (phospho-acceptor) domain NRY95_10875 PF00672 HAMP domain NRY95_10875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_10880 PF12704 MacB-like periplasmic core domain NRY95_10880 PF02687 FtsX-like permease family NRY95_10885 PF00005 ABC transporter NRY95_10885 PF02687 FtsX-like permease family NRY95_10885 PF12704 MacB-like periplasmic core domain NRY95_10890 PF00664 ABC transporter transmembrane region NRY95_10890 PF00005 ABC transporter NRY95_11070 PF18456 Diiron non-heme beta-hydroxylase N-terminal domain NRY95_11070 PF12706 Beta-lactamase superfamily domain NRY95_11075 PF18456 Diiron non-heme beta-hydroxylase N-terminal domain NRY95_11075 PF12706 Beta-lactamase superfamily domain NRY95_11080 PF03621 MbtH-like protein NRY95_11085 PF00664 ABC transporter transmembrane region NRY95_11085 PF00005 ABC transporter NRY95_11090 PF00378 Enoyl-CoA hydratase/isomerase NRY95_11095 PF00155 Aminotransferase class I and II NRY95_11100 PF00378 Enoyl-CoA hydratase/isomerase NRY95_11110 PF02797 Chalcone and stilbene synthases, C-terminal domain NRY95_11110 PF00195 Chalcone and stilbene synthases, N-terminal domain NRY95_11115 PF00501 AMP-binding enzyme NRY95_11115 PF13193 AMP-binding enzyme C-terminal domain NRY95_11115 PF00668 Condensation domain NRY95_11115 PF00550 Phosphopantetheine attachment site NRY95_11115 PF00975 Thioesterase domain NRY95_11120 PF00668 Condensation domain NRY95_11120 PF13193 AMP-binding enzyme C-terminal domain NRY95_11120 PF00501 AMP-binding enzyme NRY95_11120 PF00550 Phosphopantetheine attachment site NRY95_11125 PF00501 AMP-binding enzyme NRY95_11125 PF13193 AMP-binding enzyme C-terminal domain NRY95_11125 PF00668 Condensation domain NRY95_11125 PF00550 Phosphopantetheine attachment site NRY95_11125 PF00975 Thioesterase domain NRY95_11130 PF13193 AMP-binding enzyme C-terminal domain NRY95_11130 PF00668 Condensation domain NRY95_11130 PF00391 PEP-utilising enzyme, mobile domain NRY95_11130 PF00501 AMP-binding enzyme NRY95_11130 PF08241 Methyltransferase domain NRY95_11130 PF00975 Thioesterase domain NRY95_11130 PF00550 Phosphopantetheine attachment site NRY95_11145 PF00668 Condensation domain NRY95_11145 PF13193 AMP-binding enzyme C-terminal domain NRY95_11145 PF00501 AMP-binding enzyme NRY95_11145 PF00975 Thioesterase domain NRY95_11145 PF00550 Phosphopantetheine attachment site NRY95_11155 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRY95_11160 PF00155 Aminotransferase class I and II NRY95_11165 PF01070 FMN-dependent dehydrogenase NRY95_11170 PF00202 Aminotransferase class-III NRY95_11180 PF00664 ABC transporter transmembrane region NRY95_11180 PF00005 ABC transporter NRY95_11200 PF00155 Aminotransferase class I and II NRY95_11210 PF00266 Aminotransferase class-V NRY95_11220 PF03301 Tryptophan 2,3-dioxygenase NRY95_11225 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRY95_11230 PF13579 Glycosyl transferase 4-like domain NRY95_11230 PF00534 Glycosyl transferases group 1 NRY95_11235 PF00534 Glycosyl transferases group 1 NRY95_11235 PF13439 Glycosyltransferase Family 4 NRY95_11245 PF08241 Methyltransferase domain NRY95_11250 PF01979 Amidohydrolase family NRY95_11270 PF00535 Glycosyl transferase family 2 NRY95_11275 PF01943 Polysaccharide biosynthesis protein NRY95_11280 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NRY95_11300 PF05523 WxcM-like, C-terminal NRY95_11305 PF01292 Prokaryotic cytochrome b561 NRY95_11315 PF00034 Cytochrome c NRY95_11325 PF04542 Sigma-70 region 2 NRY95_11325 PF08281 Sigma-70, region 4 NRY95_11335 PF00082 Subtilase family NRY95_11340 PF01578 Cytochrome C assembly protein NRY95_11350 PF03100 CcmE NRY95_11355 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NRY95_11355 PF01578 Cytochrome C assembly protein NRY95_11360 PF08534 Redoxin NRY95_11365 PF03918 Cytochrome C biogenesis protein NRY95_11400 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NRY95_11410 PF00654 Voltage gated chloride channel NRY95_11415 PF16193 AAA C-terminal domain NRY95_11415 PF00004 ATPase family associated with various cellular activities (AAA) NRY95_11415 PF12002 MgsA AAA+ ATPase C terminal NRY95_11420 PF03548 Outer membrane lipoprotein carrier protein LolA NRY95_11430 PF17854 FtsK alpha domain NRY95_11430 PF01580 FtsK/SpoIIIE family NRY95_11430 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NRY95_11430 PF09397 Ftsk gamma domain NRY95_11435 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRY95_11445 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NRY95_11450 PF01176 Translation initiation factor 1A / IF-1 NRY95_11455 PF00004 ATPase family associated with various cellular activities (AAA) NRY95_11455 PF07724 AAA domain (Cdc48 subfamily) NRY95_11455 PF17871 AAA lid domain NRY95_11455 PF02861 Clp amino terminal domain, pathogenicity island component NRY95_11455 PF10431 C-terminal, D2-small domain, of ClpB protein NRY95_11460 PF02617 ATP-dependent Clp protease adaptor protein ClpS NRY95_11470 PF00293 NUDIX domain NRY95_11480 PF04356 Protein of unknown function (DUF489) NRY95_11485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_11485 PF00672 HAMP domain NRY95_11485 PF12729 Four helix bundle sensory module for signal transduction NRY95_11495 PF00005 ABC transporter NRY95_11505 PF00563 EAL domain NRY95_11505 PF00990 Diguanylate cyclase, GGDEF domain NRY95_11505 PF03707 Bacterial signalling protein N terminal repeat NRY95_11510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_11510 PF07730 Histidine kinase NRY95_11515 PF00563 EAL domain NRY95_11515 PF03707 Bacterial signalling protein N terminal repeat NRY95_11515 PF00990 Diguanylate cyclase, GGDEF domain NRY95_11520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_11520 PF00512 His Kinase A (phospho-acceptor) domain NRY95_11520 PF08448 PAS fold NRY95_11520 PF00072 Response regulator receiver domain NRY95_11520 PF13188 PAS domain NRY95_11540 PF01584 CheW-like domain NRY95_11540 PF00072 Response regulator receiver domain NRY95_11550 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRY95_11550 PF00460 Flagella basal body rod protein NRY95_11555 PF13861 FlgD Tudor-like domain NRY95_11555 PF13860 FlgD Ig-like domain NRY95_11555 PF03963 Flagellar hook capping protein - N-terminal region NRY95_11560 PF07559 Flagellar basal body protein FlaE NRY95_11560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRY95_11560 PF00460 Flagella basal body rod protein NRY95_11565 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRY95_11565 PF00460 Flagella basal body rod protein NRY95_11570 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRY95_11570 PF00460 Flagella basal body rod protein NRY95_11575 PF02107 Flagellar L-ring protein NRY95_11580 PF02119 Flagellar P-ring protein NRY95_11585 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NRY95_11585 PF10135 Rod binding protein NRY95_11590 PF00460 Flagella basal body rod protein NRY95_11590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NRY95_11595 PF00669 Bacterial flagellin N-terminal helical region NRY95_11600 PF00700 Bacterial flagellin C-terminal helical region NRY95_11600 PF00669 Bacterial flagellin N-terminal helical region NRY95_11605 PF07196 Flagellin hook IN motif NRY95_11605 PF07195 Flagellar hook-associated protein 2 C-terminus NRY95_11605 PF02465 Flagellar hook-associated protein 2 N-terminus NRY95_11610 PF02561 Flagellar protein FliS NRY95_11625 PF00072 Response regulator receiver domain NRY95_11625 PF00196 Bacterial regulatory proteins, luxR family NRY95_11630 PF04552 Sigma-54, DNA binding domain NRY95_11630 PF04963 Sigma-54 factor, core binding domain NRY95_11630 PF00309 Sigma-54 factor, Activator interacting domain (AID) NRY95_11635 PF01339 CheB methylesterase NRY95_11635 PF00072 Response regulator receiver domain NRY95_11640 PF00158 Sigma-54 interaction domain NRY95_11640 PF06490 Flagellar regulatory protein FleQ NRY95_11640 PF02954 Bacterial regulatory protein, Fis family NRY95_11645 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NRY95_11655 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRY95_11655 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRY95_11675 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NRY95_11675 PF00355 Rieske [2Fe-2S] domain NRY95_11685 PF04230 Polysaccharide pyruvyl transferase NRY95_11700 PF00535 Glycosyl transferase family 2 NRY95_11700 PF00534 Glycosyl transferases group 1 NRY95_11705 PF02049 Flagellar hook-basal body complex protein FliE NRY95_11710 PF08345 Flagellar M-ring protein C-terminal NRY95_11710 PF01514 Secretory protein of YscJ/FliF family NRY95_11715 PF14842 FliG N-terminal domain NRY95_11715 PF14841 FliG middle domain NRY95_11715 PF01706 FliG C-terminal domain NRY95_11725 PF18269 T3SS EscN ATPase C-terminal domain NRY95_11725 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRY95_11745 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NRY95_11745 PF02154 Flagellar motor switch protein FliM NRY95_11750 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NRY95_11755 PF04347 Flagellar biosynthesis protein, FliO NRY95_11760 PF00813 FliP family NRY95_11765 PF01313 Bacterial export proteins, family 3 NRY95_11770 PF01311 Bacterial export proteins, family 1 NRY95_11775 PF00990 Diguanylate cyclase, GGDEF domain NRY95_11780 PF00990 Diguanylate cyclase, GGDEF domain NRY95_11785 PF01312 FlhB HrpN YscU SpaS Family NRY95_11790 PF00771 FHIPEP family NRY95_11795 PF00448 SRP54-type protein, GTPase domain NRY95_11800 PF10609 NUBPL iron-transfer P-loop NTPase NRY95_11805 PF04545 Sigma-70, region 4 NRY95_11805 PF04539 Sigma-70 region 3 NRY95_11805 PF04542 Sigma-70 region 2 NRY95_11810 PF00072 Response regulator receiver domain NRY95_11815 PF04344 Chemotaxis phosphatase, CheZ NRY95_11820 PF01584 CheW-like domain NRY95_11820 PF01627 Hpt domain NRY95_11820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_11820 PF02895 Signal transducing histidine kinase, homodimeric domain NRY95_11820 PF00072 Response regulator receiver domain NRY95_11825 PF01618 MotA/TolQ/ExbB proton channel family NRY95_11830 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRY95_11830 PF00691 OmpA family NRY95_11835 PF13614 AAA domain NRY95_11840 PF01584 CheW-like domain NRY95_11850 PF00072 Response regulator receiver domain NRY95_11855 PF01584 CheW-like domain NRY95_11855 PF02895 Signal transducing histidine kinase, homodimeric domain NRY95_11855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_11855 PF01627 Hpt domain NRY95_11855 PF09078 CheY binding NRY95_11865 PF00672 HAMP domain NRY95_11865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_11865 PF02203 Tar ligand binding domain homologue NRY95_11875 PF00672 HAMP domain NRY95_11875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_11875 PF02203 Tar ligand binding domain homologue NRY95_11880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_11880 PF00672 HAMP domain NRY95_11880 PF02203 Tar ligand binding domain homologue NRY95_11885 PF00672 HAMP domain NRY95_11885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_11885 PF02203 Tar ligand binding domain homologue NRY95_11890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_11890 PF00672 HAMP domain NRY95_11890 PF02203 Tar ligand binding domain homologue NRY95_11895 PF00672 HAMP domain NRY95_11895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_11895 PF02203 Tar ligand binding domain homologue NRY95_11900 PF07317 Flagellar regulator YcgR NRY95_11900 PF07238 PilZ domain NRY95_11905 PF01584 CheW-like domain NRY95_11915 PF02203 Tar ligand binding domain homologue NRY95_11915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_11915 PF00672 HAMP domain NRY95_11920 PF02203 Tar ligand binding domain homologue NRY95_11920 PF00672 HAMP domain NRY95_11920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_11925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_11925 PF00672 HAMP domain NRY95_11925 PF02203 Tar ligand binding domain homologue NRY95_11935 PF01739 CheR methyltransferase, SAM binding domain NRY95_11935 PF03705 CheR methyltransferase, all-alpha domain NRY95_11940 PF03975 CheD chemotactic sensory transduction NRY95_11945 PF01339 CheB methylesterase NRY95_11945 PF00072 Response regulator receiver domain NRY95_11950 PF03707 Bacterial signalling protein N terminal repeat NRY95_11950 PF00563 EAL domain NRY95_11950 PF00990 Diguanylate cyclase, GGDEF domain NRY95_11955 PF00990 Diguanylate cyclase, GGDEF domain NRY95_11960 PF00330 Aconitase family (aconitate hydratase) NRY95_11960 PF06434 Aconitate hydratase 2 N-terminus NRY95_11960 PF11791 Aconitate B N-terminal domain NRY95_11975 PF00330 Aconitase family (aconitate hydratase) NRY95_11975 PF00694 Aconitase C-terminal domain NRY95_11985 PF00501 AMP-binding enzyme NRY95_11985 PF13193 AMP-binding enzyme C-terminal domain NRY95_11990 PF00378 Enoyl-CoA hydratase/isomerase NRY95_11995 PF00072 Response regulator receiver domain NRY95_11995 PF01627 Hpt domain NRY95_11995 PF00512 His Kinase A (phospho-acceptor) domain NRY95_11995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_12000 PF00072 Response regulator receiver domain NRY95_12005 PF01336 OB-fold nucleic acid binding domain NRY95_12005 PF00152 tRNA synthetases class II (D, K and N) NRY95_12015 PF04397 LytTr DNA-binding domain NRY95_12015 PF00072 Response regulator receiver domain NRY95_12020 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) NRY95_12025 PF01368 DHH family NRY95_12025 PF02272 DHHA1 domain NRY95_12025 PF17768 RecJ OB domain NRY95_12035 PF03449 Transcription elongation factor, N-terminal NRY95_12035 PF01272 Transcription elongation factor, GreA/GreB, C-term NRY95_12040 PF02142 MGS-like domain NRY95_12040 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRY95_12040 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NRY95_12050 PF00117 Glutamine amidotransferase class-I NRY95_12050 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NRY95_12055 PF05173 Dihydrodipicolinate reductase, C-terminus NRY95_12055 PF01113 Dihydrodipicolinate reductase, N-terminus NRY95_12060 PF03475 3-alpha domain NRY95_12060 PF03473 MOSC domain NRY95_12065 PF00155 Aminotransferase class I and II NRY95_12090 PF07664 Ferrous iron transport protein B C terminus NRY95_12090 PF07670 Nucleoside recognition NRY95_12090 PF02421 Ferrous iron transport protein B NRY95_12100 PF00378 Enoyl-CoA hydratase/isomerase NRY95_12110 PF00682 HMGL-like NRY95_12115 PF00106 short chain dehydrogenase NRY95_12120 PF01132 Elongation factor P (EF-P) OB domain NRY95_12120 PF09285 Elongation factor P, C-terminal NRY95_12120 PF08207 Elongation factor P (EF-P) KOW-like domain NRY95_12140 PF02913 FAD linked oxidases, C-terminal domain NRY95_12140 PF01565 FAD binding domain NRY95_12145 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRY95_12145 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRY95_12145 PF01842 ACT domain NRY95_12160 PF13520 Amino acid permease NRY95_12165 PF13520 Amino acid permease NRY95_12170 PF00596 Class II Aldolase and Adducin N-terminal domain NRY95_12175 PF03079 ARD/ARD' family NRY95_12195 PF01502 Phosphoribosyl-AMP cyclohydrolase NRY95_12195 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NRY95_12200 PF00977 Histidine biosynthesis protein NRY95_12205 PF00977 Histidine biosynthesis protein NRY95_12210 PF00117 Glutamine amidotransferase class-I NRY95_12215 PF00475 Imidazoleglycerol-phosphate dehydratase NRY95_12220 PF00155 Aminotransferase class I and II NRY95_12225 PF00815 Histidinol dehydrogenase NRY95_12230 PF01634 ATP phosphoribosyltransferase NRY95_12230 PF08029 HisG, C-terminal domain NRY95_12240 PF03129 Anticodon binding domain NRY95_12240 PF13393 Histidyl-tRNA synthetase NRY95_12245 PF13545 Crp-like helix-turn-helix domain NRY95_12245 PF00027 Cyclic nucleotide-binding domain NRY95_12255 PF04205 FMN-binding domain NRY95_12275 PF00291 Pyridoxal-phosphate dependent enzyme NRY95_12275 PF14821 Threonine synthase N terminus NRY95_12280 PF00288 GHMP kinases N terminal domain NRY95_12280 PF08544 GHMP kinases C terminal NRY95_12285 PF00696 Amino acid kinase family NRY95_12285 PF01842 ACT domain NRY95_12285 PF13840 ACT domain NRY95_12285 PF00742 Homoserine dehydrogenase NRY95_12285 PF03447 Homoserine dehydrogenase, NAD binding domain NRY95_12295 PF00171 Aldehyde dehydrogenase family NRY95_12310 PF01180 Dihydroorotate dehydrogenase NRY95_12315 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NRY95_12315 PF01565 FAD binding domain NRY95_12330 PF01569 PAP2 superfamily NRY95_12335 PF04551 GcpE protein NRY95_12345 PF00072 Response regulator receiver domain NRY95_12350 PF03707 Bacterial signalling protein N terminal repeat NRY95_12350 PF00990 Diguanylate cyclase, GGDEF domain NRY95_12350 PF00563 EAL domain NRY95_12355 PF00474 Sodium:solute symporter family NRY95_12360 PF00933 Glycosyl hydrolase family 3 N terminal domain NRY95_12360 PF01915 Glycosyl hydrolase family 3 C-terminal domain NRY95_12360 PF14310 Fibronectin type III-like domain NRY95_12365 PF00342 Phosphoglucose isomerase NRY95_12370 PF02261 Aspartate decarboxylase NRY95_12375 PF02569 Pantoate-beta-alanine ligase NRY95_12380 PF02548 Ketopantoate hydroxymethyltransferase NRY95_12385 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NRY95_12390 PF12627 Probable RNA and SrmB- binding site of polymerase A NRY95_12390 PF12626 Polymerase A arginine-rich C-terminus NRY95_12390 PF01743 Poly A polymerase head domain NRY95_12400 PF02649 Type I GTP cyclohydrolase folE2 NRY95_12405 PF01520 N-acetylmuramoyl-L-alanine amidase NRY95_12405 PF11741 AMIN domain NRY95_12410 PF09286 Pro-kumamolisin, activation domain NRY95_12410 PF04151 Bacterial pre-peptidase C-terminal domain NRY95_12415 PF00083 Sugar (and other) transporter NRY95_12425 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NRY95_12425 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NRY95_12435 PF16338 Domain of unknown function (DUF4968) NRY95_12435 PF17137 Domain of unknown function (DUF5110) NRY95_12435 PF01055 Glycosyl hydrolases family 31 NRY95_12450 PF00942 Cellulose binding domain NRY95_12450 PF03442 Carbohydrate binding domain X2 NRY95_12465 PF03466 LysR substrate binding domain NRY95_12465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_12470 PF01081 KDPG and KHG aldolase NRY95_12475 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NRY95_12475 PF13378 Enolase C-terminal domain-like NRY95_12480 PF08450 SMP-30/Gluconolactonase/LRE-like region NRY95_12485 PF05035 2-keto-3-deoxy-galactonokinase NRY95_12490 PF11953 Domain of unknown function (DUF3470) NRY95_12490 PF00037 4Fe-4S binding domain NRY95_12500 PF00701 Dihydrodipicolinate synthetase family NRY95_12510 PF00578 AhpC/TSA family NRY95_12515 PF02562 PhoH-like protein NRY95_12515 PF13638 PIN domain NRY95_12530 PF02581 Thiamine monophosphate synthase NRY95_12530 PF08543 Phosphomethylpyrimidine kinase NRY95_12555 PF03466 LysR substrate binding domain NRY95_12555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_12560 PF17954 Quercetinase C-terminal cupin domain NRY95_12560 PF02678 Pirin NRY95_12565 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRY95_12565 PF00128 Alpha amylase, catalytic domain NRY95_12575 PF01527 Transposase NRY95_12580 PF13333 Integrase core domain NRY95_12580 PF13276 HTH-like domain NRY95_12580 PF00665 Integrase core domain NRY95_12645 PF02599 Global regulator protein family NRY95_12650 PF01411 tRNA synthetases class II (A) NRY95_12650 PF02272 DHHA1 domain NRY95_12650 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NRY95_12655 PF02631 RecX family NRY95_12660 PF00154 recA bacterial DNA recombination protein NRY95_12665 PF01726 LexA DNA binding domain NRY95_12665 PF00717 Peptidase S24-like NRY95_12670 PF03109 ABC1 family NRY95_12675 PF02464 Competence-damaged protein NRY95_12680 PF16360 GTP-binding GTPase Middle Region NRY95_12680 PF13167 GTP-binding GTPase N-terminal NRY95_12680 PF01926 50S ribosome-binding GTPase NRY95_12685 PF17209 Hfq protein NRY95_12695 PF00809 Pterin binding enzyme NRY95_12700 PF06480 FtsH Extracellular NRY95_12700 PF00004 ATPase family associated with various cellular activities (AAA) NRY95_12700 PF17862 AAA+ lid domain NRY95_12700 PF01434 Peptidase family M41 NRY95_12705 PF01728 FtsJ-like methyltransferase NRY95_12710 PF01985 CRS1 / YhbY (CRM) domain NRY95_12720 PF01476 LysM domain NRY95_12720 PF01551 Peptidase family M23 NRY95_12725 PF09335 SNARE associated Golgi protein NRY95_12735 PF01975 Survival protein SurE NRY95_12740 PF01713 Smr domain NRY95_12745 PF01142 tRNA pseudouridine synthase D (TruD) NRY95_12750 PF02542 YgbB family NRY95_12755 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NRY95_12760 PF04977 Septum formation initiator NRY95_12765 PF00113 Enolase, C-terminal TIM barrel domain NRY95_12765 PF03952 Enolase, N-terminal domain NRY95_12770 PF00793 DAHP synthetase I family NRY95_12775 PF06418 CTP synthase N-terminus NRY95_12775 PF00117 Glutamine amidotransferase class-I NRY95_12785 PF00986 DNA gyrase B subunit, carboxyl terminus NRY95_12785 PF01751 Toprim domain NRY95_12785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_12785 PF00204 DNA gyrase B NRY95_12790 PF00296 Luciferase-like monooxygenase NRY95_12795 PF00005 ABC transporter NRY95_12800 PF01032 FecCD transport family NRY95_12805 PF01032 FecCD transport family NRY95_12810 PF01497 Periplasmic binding protein NRY95_12815 PF07715 TonB-dependent Receptor Plug Domain NRY95_12815 PF00593 TonB dependent receptor NRY95_12825 PF02611 CDP-diacylglycerol pyrophosphatase NRY95_12850 PF01384 Phosphate transporter family NRY95_12860 PF01595 Cyclin M transmembrane N-terminal domain NRY95_12860 PF00571 CBS domain NRY95_12860 PF03471 Transporter associated domain NRY95_12875 PF00296 Luciferase-like monooxygenase NRY95_12885 PF00581 Rhodanese-like domain NRY95_12885 PF17773 UPF0176 acylphosphatase like domain NRY95_12895 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRY95_12905 PF00144 Beta-lactamase NRY95_12910 PF00990 Diguanylate cyclase, GGDEF domain NRY95_12915 PF13673 Acetyltransferase (GNAT) domain NRY95_12920 PF01645 Conserved region in glutamate synthase NRY95_12925 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NRY95_12925 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NRY95_12925 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NRY95_12940 PF00356 Bacterial regulatory proteins, lacI family NRY95_12945 PF05524 PEP-utilising enzyme, N-terminal NRY95_12945 PF00391 PEP-utilising enzyme, mobile domain NRY95_12945 PF02896 PEP-utilising enzyme, TIM barrel domain NRY95_12945 PF00381 PTS HPr component phosphorylation site NRY95_12945 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NRY95_12950 PF00294 pfkB family carbohydrate kinase NRY95_12955 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NRY95_12970 PF00486 Transcriptional regulatory protein, C terminal NRY95_12970 PF00072 Response regulator receiver domain NRY95_12975 PF00512 His Kinase A (phospho-acceptor) domain NRY95_12975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_12990 PF00005 ABC transporter NRY95_12990 PF02687 FtsX-like permease family NRY95_12990 PF12704 MacB-like periplasmic core domain NRY95_13030 PF00550 Phosphopantetheine attachment site NRY95_13035 PF00109 Beta-ketoacyl synthase, N-terminal domain NRY95_13035 PF02801 Beta-ketoacyl synthase, C-terminal domain NRY95_13040 PF00202 Aminotransferase class-III NRY95_13050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_13050 PF03466 LysR substrate binding domain NRY95_13055 PF00698 Acyl transferase domain NRY95_13055 PF08240 Alcohol dehydrogenase GroES-like domain NRY95_13055 PF16197 Ketoacyl-synthetase C-terminal extension NRY95_13055 PF00109 Beta-ketoacyl synthase, N-terminal domain NRY95_13055 PF02801 Beta-ketoacyl synthase, C-terminal domain NRY95_13055 PF08659 KR domain NRY95_13055 PF00550 Phosphopantetheine attachment site NRY95_13055 PF14765 Polyketide synthase dehydratase NRY95_13060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_13060 PF03466 LysR substrate binding domain NRY95_13070 PF00326 Prolyl oligopeptidase family NRY95_13070 PF07676 WD40-like Beta Propeller Repeat NRY95_13080 PF06969 HemN C-terminal domain NRY95_13080 PF04055 Radical SAM superfamily NRY95_13095 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase NRY95_13095 PF13746 4Fe-4S dicluster domain NRY95_13095 PF12801 4Fe-4S binding domain NRY95_13145 PF02321 Outer membrane efflux protein NRY95_13160 PF00873 AcrB/AcrD/AcrF family NRY95_13170 PF01066 CDP-alcohol phosphatidyltransferase NRY95_13175 PF02151 UvrB/uvrC motif NRY95_13175 PF01541 GIY-YIG catalytic domain NRY95_13175 PF08459 UvrC Helix-hairpin-helix N-terminal NRY95_13185 PF01451 Low molecular weight phosphotyrosine protein phosphatase NRY95_13190 PF02348 Cytidylyltransferase NRY95_13195 PF07715 TonB-dependent Receptor Plug Domain NRY95_13195 PF07660 Secretin and TonB N terminus short domain NRY95_13195 PF00593 TonB dependent receptor NRY95_13205 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NRY95_13210 PF00664 ABC transporter transmembrane region NRY95_13210 PF00005 ABC transporter NRY95_13215 PF02472 Biopolymer transport protein ExbD/TolR NRY95_13220 PF01618 MotA/TolQ/ExbB proton channel family NRY95_13225 PF03772 Competence protein NRY95_13225 PF00753 Metallo-beta-lactamase superfamily NRY95_13235 PF00005 ABC transporter NRY95_13240 PF02687 FtsX-like permease family NRY95_13240 PF12704 MacB-like periplasmic core domain NRY95_13250 PF03937 Flavinator of succinate dehydrogenase NRY95_13255 PF13237 4Fe-4S dicluster domain NRY95_13255 PF13085 2Fe-2S iron-sulfur cluster binding domain NRY95_13260 PF02910 Fumarate reductase flavoprotein C-term NRY95_13260 PF00890 FAD binding domain NRY95_13265 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NRY95_13270 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NRY95_13280 PF01571 Aminomethyltransferase folate-binding domain NRY95_13285 PF00005 ABC transporter NRY95_13285 PF17912 MalK OB fold domain NRY95_13290 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NRY95_13290 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NRY95_13295 PF02685 Glucokinase NRY95_13300 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NRY95_13305 PF00920 Dehydratase family NRY95_13310 PF01081 KDPG and KHG aldolase NRY95_13320 PF00528 Binding-protein-dependent transport system inner membrane component NRY95_13325 PF00528 Binding-protein-dependent transport system inner membrane component NRY95_13350 PF00356 Bacterial regulatory proteins, lacI family NRY95_13360 PF03795 YCII-related domain NRY95_13365 PF02616 Segregation and condensation protein ScpA NRY95_13370 PF04079 Segregation and condensation complex subunit ScpB NRY95_13375 PF00849 RNA pseudouridylate synthase NRY95_13375 PF01479 S4 domain NRY95_13395 PF00795 Carbon-nitrogen hydrolase NRY95_13400 PF00155 Aminotransferase class I and II NRY95_13405 PF00005 ABC transporter NRY95_13410 PF03379 CcmB protein NRY95_13415 PF01578 Cytochrome C assembly protein NRY95_13425 PF03100 CcmE NRY95_13430 PF01578 Cytochrome C assembly protein NRY95_13430 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NRY95_13435 PF08534 Redoxin NRY95_13440 PF03918 Cytochrome C biogenesis protein NRY95_13450 PF00561 alpha/beta hydrolase fold NRY95_13455 PF00664 ABC transporter transmembrane region NRY95_13455 PF00005 ABC transporter NRY95_13460 PF00664 ABC transporter transmembrane region NRY95_13460 PF00005 ABC transporter NRY95_13465 PF01654 Cytochrome bd terminal oxidase subunit I NRY95_13470 PF02322 Cytochrome bd terminal oxidase subunit II NRY95_13485 PF02129 X-Pro dipeptidyl-peptidase (S15 family) NRY95_13485 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain NRY95_13500 PF00171 Aldehyde dehydrogenase family NRY95_13505 PF01472 PUA domain NRY95_13505 PF00696 Amino acid kinase family NRY95_13515 PF00206 Lyase NRY95_13520 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRY95_13530 PF00696 Amino acid kinase family NRY95_13530 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase NRY95_13535 PF07687 Peptidase dimerisation domain NRY95_13535 PF01546 Peptidase family M20/M25/M40 NRY95_13540 PF00764 Arginosuccinate synthase NRY95_13545 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NRY95_13545 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NRY95_13560 PF02657 Fe-S metabolism associated domain NRY95_13570 PF00561 alpha/beta hydrolase fold NRY95_13575 PF00529 HlyD membrane-fusion protein of T1SS NRY95_13575 PF00529 HlyD membrane-fusion protein of T1SS NRY95_13580 PF00005 ABC transporter NRY95_13580 PF03412 Peptidase C39 family NRY95_13580 PF00664 ABC transporter transmembrane region NRY95_13605 PF13360 PQQ-like domain NRY95_13630 PF01258 Prokaryotic dksA/traR C4-type zinc finger NRY95_13635 PF01809 Putative membrane protein insertion efficiency factor NRY95_13640 PF01979 Amidohydrolase family NRY95_13645 PF01551 Peptidase family M23 NRY95_13645 PF08460 Bacterial SH3 domain NRY95_13660 PF06751 Ethanolamine ammonia lyase large subunit (EutB) NRY95_13665 PF05985 Ethanolamine ammonia-lyase light chain (EutC) NRY95_13670 PF01095 Pectinesterase NRY95_13680 PF13419 Haloacid dehalogenase-like hydrolase NRY95_13690 PF01979 Amidohydrolase family NRY95_13695 PF06736 Protein of unknown function (DUF1211) NRY95_13700 PF01132 Elongation factor P (EF-P) OB domain NRY95_13700 PF08207 Elongation factor P (EF-P) KOW-like domain NRY95_13700 PF09285 Elongation factor P, C-terminal NRY95_13705 PF04055 Radical SAM superfamily NRY95_13715 PF00990 Diguanylate cyclase, GGDEF domain NRY95_13715 PF01590 GAF domain NRY95_13715 PF00563 EAL domain NRY95_13715 PF00360 Phytochrome region NRY95_13725 PF00588 SpoU rRNA Methylase family NRY95_13730 PF00459 Inositol monophosphatase family NRY95_13735 PF07549 SecD/SecF GG Motif NRY95_13735 PF02355 Protein export membrane protein NRY95_13740 PF07549 SecD/SecF GG Motif NRY95_13740 PF02355 Protein export membrane protein NRY95_13740 PF13721 SecD export protein N-terminal TM region NRY95_13745 PF02699 Preprotein translocase subunit NRY95_13750 PF01702 Queuine tRNA-ribosyltransferase NRY95_13755 PF02547 Queuosine biosynthesis protein NRY95_13765 PF00202 Aminotransferase class-III NRY95_13775 PF02583 Metal-sensitive transcriptional repressor NRY95_13780 PF01545 Cation efflux family NRY95_13780 PF16916 Dimerisation domain of Zinc Transporter NRY95_13785 PF01965 DJ-1/PfpI family NRY95_13785 PF12833 Helix-turn-helix domain NRY95_13795 PF07715 TonB-dependent Receptor Plug Domain NRY95_13795 PF00593 TonB dependent receptor NRY95_13830 PF02927 Cellulase N-terminal ig-like domain NRY95_13830 PF00759 Glycosyl hydrolase family 9 NRY95_13835 PF00753 Metallo-beta-lactamase superfamily NRY95_13845 PF00037 4Fe-4S binding domain NRY95_13855 PF01467 Cytidylyltransferase-like NRY95_13865 PF00183 Hsp90 protein NRY95_13865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_13870 PF02615 Malate/L-lactate dehydrogenase NRY95_13875 PF07715 TonB-dependent Receptor Plug Domain NRY95_13875 PF00593 TonB dependent receptor NRY95_13880 PF16499 Alpha galactosidase A NRY95_13880 PF17801 Alpha galactosidase C-terminal beta sandwich domain NRY95_13890 PF00593 TonB dependent receptor NRY95_13890 PF07715 TonB-dependent Receptor Plug Domain NRY95_13900 PF04616 Glycosyl hydrolases family 43 NRY95_13905 PF07532 Bacterial Ig-like domain (group 4) NRY95_13910 PF07715 TonB-dependent Receptor Plug Domain NRY95_13910 PF00593 TonB dependent receptor NRY95_13935 PF13520 Amino acid permease NRY95_13950 PF01321 Creatinase/Prolidase N-terminal domain NRY95_13950 PF00557 Metallopeptidase family M24 NRY95_13955 PF00171 Aldehyde dehydrogenase family NRY95_13960 PF00701 Dihydrodipicolinate synthetase family NRY95_13965 PF17806 Sarcosine oxidase A3 domain NRY95_13965 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRY95_13975 PF01266 FAD dependent oxidoreductase NRY95_13980 PF05544 Proline racemase NRY95_13990 PF02881 SRP54-type protein, helical bundle domain NRY95_13990 PF00448 SRP54-type protein, GTPase domain NRY95_13995 PF14815 NUDIX domain NRY95_13995 PF10576 Iron-sulfur binding domain of endonuclease III NRY95_13995 PF00633 Helix-hairpin-helix motif NRY95_13995 PF00730 HhH-GPD superfamily base excision DNA repair protein NRY95_14000 PF04362 Bacterial Fe(2+) trafficking NRY95_14020 PF01612 3'-5' exonuclease NRY95_14020 PF00570 HRDC domain NRY95_14050 PF01584 CheW-like domain NRY95_14055 PF00672 HAMP domain NRY95_14055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_14055 PF02203 Tar ligand binding domain homologue NRY95_14060 PF00270 DEAD/DEAH box helicase NRY95_14060 PF00271 Helicase conserved C-terminal domain NRY95_14060 PF08494 DEAD/H associated NRY95_14075 PF00563 EAL domain NRY95_14075 PF00990 Diguanylate cyclase, GGDEF domain NRY95_14075 PF03707 Bacterial signalling protein N terminal repeat NRY95_14075 PF13188 PAS domain NRY95_14080 PF00575 S1 RNA binding domain NRY95_14080 PF01138 3' exoribonuclease family, domain 1 NRY95_14080 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NRY95_14080 PF03725 3' exoribonuclease family, domain 2 NRY95_14080 PF00013 KH domain NRY95_14085 PF00312 Ribosomal protein S15 NRY95_14090 PF09157 Pseudouridine synthase II TruB, C-terminal NRY95_14090 PF16198 tRNA pseudouridylate synthase B C-terminal domain NRY95_14090 PF01509 TruB family pseudouridylate synthase (N terminal domain) NRY95_14095 PF02033 Ribosome-binding factor A NRY95_14100 PF00009 Elongation factor Tu GTP binding domain NRY95_14100 PF11987 Translation-initiation factor 2 NRY95_14100 PF08364 Bacterial translation initiation factor IF-2 associated region NRY95_14100 PF04760 Translation initiation factor IF-2, N-terminal region NRY95_14105 PF13184 NusA-like KH domain NRY95_14105 PF08529 NusA N-terminal domain NRY95_14105 PF00575 S1 RNA binding domain NRY95_14110 PF17384 RimP C-terminal SH3 domain NRY95_14110 PF02576 RimP N-terminal domain NRY95_14120 PF00361 Proton-conducting membrane transporter NRY95_14125 PF00361 Proton-conducting membrane transporter NRY95_14125 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus NRY95_14130 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NRY95_14130 PF00361 Proton-conducting membrane transporter NRY95_14135 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NRY95_14140 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NRY95_14145 PF12838 4Fe-4S dicluster domain NRY95_14150 PF00146 NADH dehydrogenase NRY95_14155 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal NRY95_14155 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NRY95_14155 PF00384 Molybdopterin oxidoreductase NRY95_14160 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NRY95_14160 PF10531 SLBB domain NRY95_14160 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NRY95_14170 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NRY95_14175 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NRY95_14180 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NRY95_14185 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NRY95_14200 PF00121 Triosephosphate isomerase NRY95_14215 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NRY95_14215 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NRY95_14215 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NRY95_14215 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NRY95_14220 PF17848 Acetyl-coA carboxylase zinc finger domain NRY95_14220 PF01039 Carboxyl transferase domain NRY95_14225 PF00290 Tryptophan synthase alpha chain NRY95_14230 PF00291 Pyridoxal-phosphate dependent enzyme NRY95_14235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_14235 PF03466 LysR substrate binding domain NRY95_14245 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NRY95_14250 PF01416 tRNA pseudouridine synthase NRY95_14260 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRY95_14260 PF02774 Semialdehyde dehydrogenase, dimerisation domain NRY95_14265 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NRY95_14265 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NRY95_14270 PF01264 Chorismate synthase NRY95_14275 PF05175 Methyltransferase small domain NRY95_14280 PF02630 SCO1/SenC NRY95_14285 PF02666 Phosphatidylserine decarboxylase NRY95_14295 PF06737 Transglycosylase-like domain NRY95_14300 PF05872 Bacterial protein of unknown function (DUF853) NRY95_14305 PF00293 NUDIX domain NRY95_14320 PF01272 Transcription elongation factor, GreA/GreB, C-term NRY95_14320 PF03449 Transcription elongation factor, N-terminal NRY95_14325 PF18693 TRAM domain NRY95_14325 PF00919 Uncharacterized protein family UPF0004 NRY95_14325 PF04055 Radical SAM superfamily NRY95_14330 PF01381 Helix-turn-helix NRY95_14335 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin NRY95_14345 PF00004 ATPase family associated with various cellular activities (AAA) NRY95_14345 PF17862 AAA+ lid domain NRY95_14345 PF06480 FtsH Extracellular NRY95_14345 PF01434 Peptidase family M41 NRY95_14350 PF00082 Subtilase family NRY95_14360 PF00580 UvrD/REP helicase N-terminal domain NRY95_14360 PF13361 UvrD-like helicase C-terminal domain NRY95_14365 PF02463 RecF/RecN/SMC N terminal domain NRY95_14375 PF01738 Dienelactone hydrolase family NRY95_14395 PF00692 dUTPase NRY95_14400 PF10609 NUBPL iron-transfer P-loop NTPase NRY95_14405 PF00593 TonB dependent receptor NRY95_14405 PF07715 TonB-dependent Receptor Plug Domain NRY95_14410 PF13181 Tetratricopeptide repeat NRY95_14425 PF05649 Peptidase family M13 NRY95_14425 PF01431 Peptidase family M13 NRY95_14450 PF01694 Rhomboid family NRY95_14450 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease NRY95_14465 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRY95_14465 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRY95_14470 PF04235 Protein of unknown function (DUF418) NRY95_14475 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRY95_14480 PF00877 NlpC/P60 family NRY95_14485 PF00877 NlpC/P60 family NRY95_14490 PF03061 Thioesterase superfamily NRY95_14495 PF13649 Methyltransferase domain NRY95_14500 PF00375 Sodium:dicarboxylate symporter family NRY95_14505 PF00245 Alkaline phosphatase NRY95_14515 PF11734 TilS substrate C-terminal domain NRY95_14515 PF09179 TilS substrate binding domain NRY95_14515 PF01171 PP-loop family NRY95_14520 PF02609 Exonuclease VII small subunit NRY95_14525 PF00348 Polyprenyl synthetase NRY95_14530 PF14521 Lysine-specific metallo-endopeptidase NRY95_14555 PF01523 Putative modulator of DNA gyrase NRY95_14560 PF04751 Protein of unknown function (DUF615) NRY95_14565 PF01523 Putative modulator of DNA gyrase NRY95_14575 PF10150 Ribonuclease E/G family NRY95_14575 PF00575 S1 RNA binding domain NRY95_14580 PF02545 Maf-like protein NRY95_14585 PF04402 Protein of unknown function (DUF541) NRY95_14595 PF07715 TonB-dependent Receptor Plug Domain NRY95_14595 PF00593 TonB dependent receptor NRY95_14600 PF02590 Predicted SPOUT methyltransferase NRY95_14615 PF01467 Cytidylyltransferase-like NRY95_14630 PF08264 Anticodon-binding domain of tRNA NRY95_14630 PF00133 tRNA synthetases class I (I, L, M and V) NRY95_14630 PF13603 Leucyl-tRNA synthetase, Domain 2 NRY95_14640 PF00085 Thioredoxin NRY95_14650 PF00563 EAL domain NRY95_14650 PF00990 Diguanylate cyclase, GGDEF domain NRY95_14650 PF00360 Phytochrome region NRY95_14650 PF01590 GAF domain NRY95_14665 PF02592 Putative vitamin uptake transporter NRY95_14675 PF02574 Homocysteine S-methyltransferase NRY95_14685 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRY95_14695 PF09334 tRNA synthetases class I (M) NRY95_14695 PF01588 Putative tRNA binding domain NRY95_14705 PF04060 Putative Fe-S cluster NRY95_14720 PF04542 Sigma-70 region 2 NRY95_14720 PF04545 Sigma-70, region 4 NRY95_14765 PF01042 Endoribonuclease L-PSP NRY95_14775 PF09924 Uncharacterised conserved protein (DUF2156) NRY95_14775 PF03706 Lysylphosphatidylglycerol synthase TM region NRY95_14810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_14810 PF00672 HAMP domain NRY95_14810 PF02203 Tar ligand binding domain homologue NRY95_14820 PF07690 Major Facilitator Superfamily NRY95_14825 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRY95_14830 PF03466 LysR substrate binding domain NRY95_14830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_14835 PF00144 Beta-lactamase NRY95_14840 PF07690 Major Facilitator Superfamily NRY95_14845 PF08274 PhnA Zinc-Ribbon NRY95_14845 PF03831 PhnA domain NRY95_14855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NRY95_14865 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus NRY95_14865 PF05175 Methyltransferase small domain NRY95_14895 PF01258 Prokaryotic dksA/traR C4-type zinc finger NRY95_14900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_14900 PF03466 LysR substrate binding domain NRY95_14905 PF00106 short chain dehydrogenase NRY95_14915 PF01863 Protein of unknown function DUF45 NRY95_14935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_14935 PF00512 His Kinase A (phospho-acceptor) domain NRY95_14935 PF07689 KaiB domain NRY95_14940 PF01011 PQQ enzyme repeat NRY95_14940 PF13360 PQQ-like domain NRY95_14980 PF01642 Methylmalonyl-CoA mutase NRY95_14980 PF02310 B12 binding domain NRY95_14985 PF09286 Pro-kumamolisin, activation domain NRY95_14985 PF00082 Subtilase family NRY95_14990 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NRY95_14990 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NRY95_14995 PF00082 Subtilase family NRY95_14995 PF12951 Passenger-associated-transport-repeat NRY95_14995 PF03797 Autotransporter beta-domain NRY95_15000 PF02803 Thiolase, C-terminal domain NRY95_15000 PF00108 Thiolase, N-terminal domain NRY95_15010 PF00012 Hsp70 protein NRY95_15025 PF00990 Diguanylate cyclase, GGDEF domain NRY95_15025 PF00072 Response regulator receiver domain NRY95_15040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRY95_15040 PF02770 Acyl-CoA dehydrogenase, middle domain NRY95_15040 PF18158 Adaptive response protein AidB N-terminal domain NRY95_15045 PF04679 ATP dependent DNA ligase C terminal region NRY95_15045 PF01068 ATP dependent DNA ligase domain NRY95_15045 PF04675 DNA ligase N terminus NRY95_15050 PF04679 ATP dependent DNA ligase C terminal region NRY95_15050 PF04675 DNA ligase N terminus NRY95_15050 PF01068 ATP dependent DNA ligase domain NRY95_15055 PF00271 Helicase conserved C-terminal domain NRY95_15055 PF08494 DEAD/H associated NRY95_15055 PF00270 DEAD/DEAH box helicase NRY95_15065 PF01494 FAD binding domain NRY95_15070 PF00313 'Cold-shock' DNA-binding domain NRY95_15075 PF01048 Phosphorylase superfamily NRY95_15080 PF00156 Phosphoribosyl transferase domain NRY95_15085 PF00933 Glycosyl hydrolase family 3 N terminal domain NRY95_15095 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRY95_15095 PF00529 HlyD membrane-fusion protein of T1SS NRY95_15100 PF03412 Peptidase C39 family NRY95_15100 PF00664 ABC transporter transmembrane region NRY95_15100 PF00005 ABC transporter NRY95_15130 PF01928 CYTH domain NRY95_15135 PF05958 tRNA (Uracil-5-)-methyltransferase NRY95_15140 PF00486 Transcriptional regulatory protein, C terminal NRY95_15140 PF00072 Response regulator receiver domain NRY95_15145 PF11967 Recombination protein O N terminal NRY95_15145 PF02565 Recombination protein O C terminal NRY95_15150 PF07650 KH domain NRY95_15150 PF01926 50S ribosome-binding GTPase NRY95_15155 PF00035 Double-stranded RNA binding motif NRY95_15155 PF14622 Ribonuclease-III-like NRY95_15165 PF10502 Signal peptidase, peptidase S26 NRY95_15170 PF00679 Elongation factor G C-terminus NRY95_15170 PF00009 Elongation factor Tu GTP binding domain NRY95_15170 PF03144 Elongation factor Tu domain 2 NRY95_15170 PF06421 GTP-binding protein LepA C-terminus NRY95_15175 PF13180 PDZ domain NRY95_15185 PF04542 Sigma-70 region 2 NRY95_15185 PF08281 Sigma-70, region 4 NRY95_15190 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NRY95_15190 PF00378 Enoyl-CoA hydratase/isomerase NRY95_15190 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NRY95_15195 PF01545 Cation efflux family NRY95_15200 PF03601 Conserved hypothetical protein 698 NRY95_15205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_15215 PF07745 Glycosyl hydrolase family 53 NRY95_15220 PF02837 Glycosyl hydrolases family 2, sugar binding domain NRY95_15220 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NRY95_15220 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 NRY95_15220 PF16355 Domain of unknown function (DUF4982) NRY95_15220 PF00703 Glycosyl hydrolases family 2 NRY95_15230 PF05192 MutS domain III NRY95_15230 PF05190 MutS family domain IV NRY95_15230 PF05188 MutS domain II NRY95_15230 PF01624 MutS domain I NRY95_15230 PF00488 MutS domain V NRY95_15235 PF13417 Glutathione S-transferase, N-terminal domain NRY95_15245 PF00141 Peroxidase NRY95_15250 PF01479 S4 domain NRY95_15260 PF01554 MatE NRY95_15265 PF01245 Ribosomal protein L19 NRY95_15270 PF01746 tRNA (Guanine-1)-methyltransferase NRY95_15275 PF01782 RimM N-terminal domain NRY95_15275 PF05239 PRC-barrel domain NRY95_15280 PF00886 Ribosomal protein S16 NRY95_15290 PF03060 Nitronate monooxygenase NRY95_15295 PF00448 SRP54-type protein, GTPase domain NRY95_15295 PF02881 SRP54-type protein, helical bundle domain NRY95_15295 PF02978 Signal peptide binding domain NRY95_15305 PF01263 Aldose 1-epimerase NRY95_15310 PF06964 Alpha-L-arabinofuranosidase C-terminal domain NRY95_15320 PF00009 Elongation factor Tu GTP binding domain NRY95_15320 PF14492 Elongation Factor G, domain II NRY95_15320 PF00679 Elongation factor G C-terminus NRY95_15320 PF03144 Elongation factor Tu domain 2 NRY95_15320 PF03764 Elongation factor G, domain IV NRY95_15335 PF01965 DJ-1/PfpI family NRY95_15345 PF00999 Sodium/hydrogen exchanger family NRY95_15350 PF03466 LysR substrate binding domain NRY95_15350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_15365 PF13417 Glutathione S-transferase, N-terminal domain NRY95_15365 PF00043 Glutathione S-transferase, C-terminal domain NRY95_15370 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation NRY95_15370 PF14508 Glycosyl-hydrolase 97 N-terminal NRY95_15370 PF10566 Glycoside hydrolase 97 NRY95_15380 PF02653 Branched-chain amino acid transport system / permease component NRY95_15385 PF02653 Branched-chain amino acid transport system / permease component NRY95_15390 PF00005 ABC transporter NRY95_15395 PF13407 Periplasmic binding protein domain NRY95_15400 PF00171 Aldehyde dehydrogenase family NRY95_15410 PF03466 LysR substrate binding domain NRY95_15410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_15420 PF00920 Dehydratase family NRY95_15430 PF05656 Protein of unknown function (DUF805) NRY95_15435 PF18073 Rubredoxin metal binding domain NRY95_15450 PF00106 short chain dehydrogenase NRY95_15455 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NRY95_15460 PF00510 Cytochrome c oxidase subunit III NRY95_15465 PF00115 Cytochrome C and Quinol oxidase polypeptide I NRY95_15470 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NRY95_15470 PF06481 COX Aromatic Rich Motif NRY95_15475 PF08348 YheO-like PAS domain NRY95_15475 PF13309 HTH domain NRY95_15490 PF00593 TonB dependent receptor NRY95_15490 PF07715 TonB-dependent Receptor Plug Domain NRY95_15500 PF01979 Amidohydrolase family NRY95_15515 PF01042 Endoribonuclease L-PSP NRY95_15560 PF02401 LytB protein NRY95_15565 PF01252 Signal peptidase (SPase) II NRY95_15570 PF08264 Anticodon-binding domain of tRNA NRY95_15570 PF00133 tRNA synthetases class I (I, L, M and V) NRY95_15570 PF06827 Zinc finger found in FPG and IleRS NRY95_15575 PF06574 FAD synthetase NRY95_15575 PF01687 Riboflavin kinase NRY95_15600 PF03023 Lipid II flippase MurJ NRY95_15605 PF01649 Ribosomal protein S20 NRY95_15610 PF01926 50S ribosome-binding GTPase NRY95_15610 PF01018 GTP1/OBG NRY95_15615 PF01016 Ribosomal L27 protein NRY95_15620 PF00829 Ribosomal prokaryotic L21 protein NRY95_15625 PF00005 ABC transporter NRY95_15625 PF17760 UvrA interaction domain NRY95_15625 PF17755 UvrA DNA-binding domain NRY95_15640 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NRY95_15640 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NRY95_15640 PF00378 Enoyl-CoA hydratase/isomerase NRY95_15655 PF13202 EF hand NRY95_15655 PF00923 Transaldolase/Fructose-6-phosphate aldolase NRY95_15675 PF08447 PAS fold NRY95_15675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_15695 PF02222 ATP-grasp domain NRY95_15695 PF01370 NAD dependent epimerase/dehydratase family NRY95_15715 PF13026 Protein of unknown function (DUF3887) NRY95_15715 PF12146 Serine aminopeptidase, S33 NRY95_15740 PF00730 HhH-GPD superfamily base excision DNA repair protein NRY95_15765 PF00196 Bacterial regulatory proteins, luxR family NRY95_15765 PF00072 Response regulator receiver domain NRY95_15770 PF07730 Histidine kinase NRY95_15780 PF05209 Septum formation inhibitor MinC, N-terminal domain NRY95_15780 PF03775 Septum formation inhibitor MinC, C-terminal domain NRY95_15785 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NRY95_15790 PF03776 Septum formation topological specificity factor MinE NRY95_15800 PF00512 His Kinase A (phospho-acceptor) domain NRY95_15800 PF00672 HAMP domain NRY95_15800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_15805 PF00072 Response regulator receiver domain NRY95_15805 PF00486 Transcriptional regulatory protein, C terminal NRY95_15815 PF08019 Phosphoethanolamine transferase EptA/EptB NRY95_15815 PF00884 Sulfatase NRY95_15850 PF07690 Major Facilitator Superfamily NRY95_15855 PF02347 Glycine cleavage system P-protein NRY95_15865 PF00360 Phytochrome region NRY95_15865 PF00990 Diguanylate cyclase, GGDEF domain NRY95_15865 PF01590 GAF domain NRY95_15865 PF00563 EAL domain NRY95_15870 PF00199 Catalase NRY95_15870 PF06628 Catalase-related immune-responsive NRY95_15870 PF18011 C-terminal domain found in long catalases NRY95_15900 PF08240 Alcohol dehydrogenase GroES-like domain NRY95_15900 PF00107 Zinc-binding dehydrogenase NRY95_15900 PF13823 Alcohol dehydrogenase GroES-associated NRY95_15910 PF06165 Glycosyltransferase family 36 NRY95_15910 PF10091 Putative glucoamylase NRY95_15910 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain NRY95_15955 PF01915 Glycosyl hydrolase family 3 C-terminal domain NRY95_15955 PF00933 Glycosyl hydrolase family 3 N terminal domain NRY95_15955 PF14310 Fibronectin type III-like domain NRY95_15960 PF17755 UvrA DNA-binding domain NRY95_15970 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRY95_16000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_16000 PF06580 Histidine kinase NRY95_16000 PF07694 5TMR of 5TMR-LYT NRY95_16005 PF04397 LytTr DNA-binding domain NRY95_16005 PF00072 Response regulator receiver domain NRY95_16080 PF01433 Peptidase family M1 domain NRY95_16115 PF00709 Adenylosuccinate synthetase NRY95_16125 PF01145 SPFH domain / Band 7 family NRY95_16130 PF12221 Bacterial membrane protein N terminal NRY95_16130 PF01145 SPFH domain / Band 7 family NRY95_16135 PF00107 Zinc-binding dehydrogenase NRY95_16135 PF08240 Alcohol dehydrogenase GroES-like domain NRY95_16140 PF00072 Response regulator receiver domain NRY95_16145 PF01556 DnaJ C terminal domain NRY95_16145 PF00226 DnaJ domain NRY95_16155 PF08534 Redoxin NRY95_16165 PF00905 Penicillin binding protein transpeptidase domain NRY95_16165 PF00912 Transglycosylase NRY95_16165 PF06832 Penicillin-Binding Protein C-terminus Family NRY95_16170 PF08220 DeoR-like helix-turn-helix domain NRY95_16170 PF00455 DeoR C terminal sensor domain NRY95_16180 PF07690 Major Facilitator Superfamily NRY95_16185 PF09456 RcsC Alpha-Beta-Loop (ABL) NRY95_16185 PF00072 Response regulator receiver domain NRY95_16185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_16185 PF00512 His Kinase A (phospho-acceptor) domain NRY95_16190 PF02954 Bacterial regulatory protein, Fis family NRY95_16190 PF00072 Response regulator receiver domain NRY95_16190 PF00158 Sigma-54 interaction domain NRY95_16200 PF00005 ABC transporter NRY95_16200 PF02687 FtsX-like permease family NRY95_16200 PF12704 MacB-like periplasmic core domain NRY95_16220 PF01835 MG2 domain NRY95_16220 PF17962 Bacterial macroglobulin domain 6 NRY95_16220 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain NRY95_16220 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain NRY95_16220 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain NRY95_16220 PF00207 Alpha-2-macroglobulin family NRY95_16220 PF11974 Bacterial alpha-2-macroglobulin MG3 domain NRY95_16220 PF07703 Alpha-2-macroglobulin bait region domain NRY95_16230 PF07715 TonB-dependent Receptor Plug Domain NRY95_16230 PF00593 TonB dependent receptor NRY95_16235 PF04303 PrpF protein NRY95_16250 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH NRY95_16255 PF00330 Aconitase family (aconitate hydratase) NRY95_16255 PF00694 Aconitase C-terminal domain NRY95_16260 PF00285 Citrate synthase, C-terminal domain NRY95_16275 PF00285 Citrate synthase, C-terminal domain NRY95_16280 PF01726 LexA DNA binding domain NRY95_16280 PF00717 Peptidase S24-like NRY95_16295 PF01336 OB-fold nucleic acid binding domain NRY95_16295 PF07733 Bacterial DNA polymerase III alpha NTPase domain NRY95_16295 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NRY95_16295 PF02811 PHP domain NRY95_16295 PF14579 Helix-hairpin-helix motif NRY95_16310 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system NRY95_16325 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NRY95_16325 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NRY95_16340 PF09115 DNA polymerase III, delta subunit, C terminal NRY95_16345 PF02223 Thymidylate kinase NRY95_16350 PF02618 YceG-like family NRY95_16355 PF00425 chorismate binding enzyme NRY95_16355 PF04715 Anthranilate synthase component I, N terminal region NRY95_16360 PF00109 Beta-ketoacyl synthase, N-terminal domain NRY95_16360 PF02801 Beta-ketoacyl synthase, C-terminal domain NRY95_16365 PF00550 Phosphopantetheine attachment site NRY95_16375 PF00698 Acyl transferase domain NRY95_16380 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRY95_16380 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRY95_16385 PF01783 Ribosomal L32p protein family NRY95_16390 PF02620 Large ribosomal RNA subunit accumulation protein YceD NRY95_16395 PF02545 Maf-like protein NRY95_16415 PF07726 ATPase family associated with various cellular activities (AAA) NRY95_16415 PF17863 AAA lid domain NRY95_16425 PF13559 Domain of unknown function (DUF4129) NRY95_16425 PF01841 Transglutaminase-like superfamily NRY95_16425 PF11992 Domain of unknown function (DUF3488) NRY95_16435 PF01230 HIT domain NRY95_16440 PF13662 Toprim domain NRY95_16440 PF02132 RecR protein NRY95_16445 PF02575 YbaB/EbfC DNA-binding family NRY95_16450 PF12169 DNA polymerase III subunits gamma and tau domain III NRY95_16450 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NRY95_16450 PF12170 DNA polymerase III tau subunit V interacting with alpha NRY95_16465 PF02391 MoaE protein NRY95_16470 PF02597 ThiS family NRY95_16475 PF01967 MoaC family NRY95_16485 PF06463 Molybdenum Cofactor Synthesis C NRY95_16485 PF04055 Radical SAM superfamily NRY95_16490 PF12706 Beta-lactamase superfamily domain NRY95_16500 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NRY95_16525 PF00929 Exonuclease NRY95_16530 PF00075 RNase H NRY95_16540 PF16123 Hydroxyacylglutathione hydrolase C-terminus NRY95_16540 PF00753 Metallo-beta-lactamase superfamily NRY95_16545 PF05257 CHAP domain NRY95_16545 PF01476 LysM domain NRY95_16570 PF00216 Bacterial DNA-binding protein NRY95_16575 PF02190 ATP-dependent protease La (LON) substrate-binding domain NRY95_16575 PF05362 Lon protease (S16) C-terminal proteolytic domain NRY95_16575 PF00004 ATPase family associated with various cellular activities (AAA) NRY95_16580 PF06689 ClpX C4-type zinc finger NRY95_16580 PF10431 C-terminal, D2-small domain, of ClpB protein NRY95_16580 PF07724 AAA domain (Cdc48 subfamily) NRY95_16585 PF00574 Clp protease NRY95_16590 PF05697 Bacterial trigger factor protein (TF) NRY95_16590 PF05698 Bacterial trigger factor protein (TF) C-terminus NRY95_16635 PF00180 Isocitrate/isopropylmalate dehydrogenase NRY95_16635 PF18324 Hypothetical protein TT1725 NRY95_16645 PF00462 Glutaredoxin NRY95_16650 PF01435 Peptidase family M48 NRY95_16650 PF13181 Tetratricopeptide repeat NRY95_16655 PF00072 Response regulator receiver domain NRY95_16655 PF00486 Transcriptional regulatory protein, C terminal NRY95_16660 PF00512 His Kinase A (phospho-acceptor) domain NRY95_16660 PF11808 Phosphate regulon sensor protein PhoR NRY95_16660 PF00989 PAS fold NRY95_16660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_16665 PF02503 Polyphosphate kinase middle domain NRY95_16665 PF13090 Polyphosphate kinase C-terminal domain 2 NRY95_16665 PF17941 Polyphosphate kinase C-terminal domain 1 NRY95_16665 PF13089 Polyphosphate kinase N-terminal domain NRY95_16670 PF02541 Ppx/GppA phosphatase family NRY95_16675 PF00534 Glycosyl transferases group 1 NRY95_16675 PF13439 Glycosyltransferase Family 4 NRY95_16680 PF01569 PAP2 superfamily NRY95_16685 PF00149 Calcineurin-like phosphoesterase NRY95_16700 PF04305 Protein of unknown function (DUF455) NRY95_16705 PF00156 Phosphoribosyl transferase domain NRY95_16720 PF08245 Mur ligase middle domain NRY95_16720 PF02875 Mur ligase family, glutamate ligase domain NRY95_16725 PF00300 Histidine phosphatase superfamily (branch 1) NRY95_16730 PF10459 Peptidase S46 NRY95_16735 PF08240 Alcohol dehydrogenase GroES-like domain NRY95_16735 PF00107 Zinc-binding dehydrogenase NRY95_16745 PF00005 ABC transporter NRY95_16745 PF17850 CysA C-terminal regulatory domain NRY95_16745 PF12857 TOBE-like domain NRY95_16750 PF00528 Binding-protein-dependent transport system inner membrane component NRY95_16755 PF00528 Binding-protein-dependent transport system inner membrane component NRY95_16765 PF00155 Aminotransferase class I and II NRY95_16770 PF00849 RNA pseudouridylate synthase NRY95_16770 PF01479 S4 domain NRY95_16780 PF00223 Photosystem I psaA/psaB protein NRY95_16780 PF00691 OmpA family NRY95_16785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_16785 PF03466 LysR substrate binding domain NRY95_16790 PF07690 Major Facilitator Superfamily NRY95_16800 PF00248 Aldo/keto reductase family NRY95_16805 PF00107 Zinc-binding dehydrogenase NRY95_16805 PF08240 Alcohol dehydrogenase GroES-like domain NRY95_16810 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NRY95_16810 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRY95_16830 PF03009 Glycerophosphoryl diester phosphodiesterase family NRY95_16845 PF00043 Glutathione S-transferase, C-terminal domain NRY95_16845 PF02798 Glutathione S-transferase, N-terminal domain NRY95_16855 PF00501 AMP-binding enzyme NRY95_16855 PF13193 AMP-binding enzyme C-terminal domain NRY95_16855 PF16177 Acetyl-coenzyme A synthetase N-terminus NRY95_16870 PF00056 lactate/malate dehydrogenase, NAD binding domain NRY95_16870 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NRY95_16880 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NRY95_16885 PF00679 Elongation factor G C-terminus NRY95_16885 PF00009 Elongation factor Tu GTP binding domain NRY95_16885 PF03144 Elongation factor Tu domain 2 NRY95_16905 PF01474 Class-II DAHP synthetase family NRY95_16915 PF02600 Disulfide bond formation protein DsbB NRY95_16920 PF01196 Ribosomal protein L17 NRY95_16925 PF01000 RNA polymerase Rpb3/RpoA insert domain NRY95_16925 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NRY95_16925 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NRY95_16930 PF00163 Ribosomal protein S4/S9 N-terminal domain NRY95_16930 PF01479 S4 domain NRY95_16935 PF00411 Ribosomal protein S11 NRY95_16940 PF00416 Ribosomal protein S13/S18 NRY95_16945 PF00344 SecY translocase NRY95_16950 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NRY95_16955 PF00327 Ribosomal protein L30p/L7e NRY95_16960 PF03719 Ribosomal protein S5, C-terminal domain NRY95_16960 PF00333 Ribosomal protein S5, N-terminal domain NRY95_16965 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NRY95_16970 PF00347 Ribosomal protein L6 NRY95_16975 PF00410 Ribosomal protein S8 NRY95_16980 PF00253 Ribosomal protein S14p/S29e NRY95_16985 PF00281 Ribosomal protein L5 NRY95_16985 PF00673 ribosomal L5P family C-terminus NRY95_16990 PF00467 KOW motif NRY95_16990 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NRY95_16995 PF00238 Ribosomal protein L14p/L23e NRY95_17000 PF00366 Ribosomal protein S17 NRY95_17005 PF00831 Ribosomal L29 protein NRY95_17010 PF00252 Ribosomal protein L16p/L10e NRY95_17015 PF00189 Ribosomal protein S3, C-terminal domain NRY95_17015 PF07650 KH domain NRY95_17020 PF00237 Ribosomal protein L22p/L17e NRY95_17025 PF00203 Ribosomal protein S19 NRY95_17030 PF00181 Ribosomal Proteins L2, RNA binding domain NRY95_17030 PF03947 Ribosomal Proteins L2, C-terminal domain NRY95_17035 PF00276 Ribosomal protein L23 NRY95_17040 PF00573 Ribosomal protein L4/L1 family NRY95_17045 PF00297 Ribosomal protein L3 NRY95_17050 PF00338 Ribosomal protein S10p/S20e NRY95_17055 PF03143 Elongation factor Tu C-terminal domain NRY95_17055 PF00009 Elongation factor Tu GTP binding domain NRY95_17055 PF03144 Elongation factor Tu domain 2 NRY95_17060 PF03144 Elongation factor Tu domain 2 NRY95_17060 PF00009 Elongation factor Tu GTP binding domain NRY95_17060 PF03764 Elongation factor G, domain IV NRY95_17060 PF14492 Elongation Factor G, domain II NRY95_17060 PF00679 Elongation factor G C-terminus NRY95_17065 PF00177 Ribosomal protein S7p/S5e NRY95_17070 PF00164 Ribosomal protein S12/S23 NRY95_17075 PF04997 RNA polymerase Rpb1, domain 1 NRY95_17075 PF04983 RNA polymerase Rpb1, domain 3 NRY95_17075 PF00623 RNA polymerase Rpb1, domain 2 NRY95_17075 PF04998 RNA polymerase Rpb1, domain 5 NRY95_17075 PF05000 RNA polymerase Rpb1, domain 4 NRY95_17080 PF00562 RNA polymerase Rpb2, domain 6 NRY95_17080 PF04565 RNA polymerase Rpb2, domain 3 NRY95_17080 PF04560 RNA polymerase Rpb2, domain 7 NRY95_17080 PF10385 RNA polymerase beta subunit external 1 domain NRY95_17080 PF04561 RNA polymerase Rpb2, domain 2 NRY95_17080 PF04563 RNA polymerase beta subunit NRY95_17085 PF00542 Ribosomal protein L7/L12 C-terminal domain NRY95_17085 PF16320 Ribosomal protein L7/L12 dimerisation domain NRY95_17090 PF00466 Ribosomal protein L10 NRY95_17095 PF00687 Ribosomal protein L1p/L10e family NRY95_17100 PF00298 Ribosomal protein L11, RNA binding domain NRY95_17100 PF03946 Ribosomal protein L11, N-terminal domain NRY95_17105 PF00467 KOW motif NRY95_17105 PF02357 Transcription termination factor nusG NRY95_17110 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NRY95_17120 PF03143 Elongation factor Tu C-terminal domain NRY95_17120 PF03144 Elongation factor Tu domain 2 NRY95_17120 PF00009 Elongation factor Tu GTP binding domain NRY95_17140 PF01926 50S ribosome-binding GTPase NRY95_17140 PF06071 Protein of unknown function (DUF933) NRY95_17145 PF01195 Peptidyl-tRNA hydrolase NRY95_17150 PF14693 Ribosomal protein TL5, C-terminal domain NRY95_17150 PF01386 Ribosomal L25p family NRY95_17155 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NRY95_17155 PF14572 Phosphoribosyl synthetase-associated domain NRY95_17165 PF00288 GHMP kinases N terminal domain NRY95_17165 PF08544 GHMP kinases C terminal NRY95_17170 PF03550 Outer membrane lipoprotein LolB NRY95_17180 PF01488 Shikimate / quinate 5-dehydrogenase NRY95_17180 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NRY95_17180 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NRY95_17185 PF00472 RF-1 domain NRY95_17185 PF03462 PCRF domain NRY95_17200 PF00994 Probable molybdopterin binding domain NRY95_17210 PF03976 Polyphosphate kinase 2 (PPK2) NRY95_17215 PF00708 Acylphosphatase NRY95_17225 PF03631 Virulence factor BrkB NRY95_17230 PF03358 NADPH-dependent FMN reductase NRY95_17245 PF04073 Aminoacyl-tRNA editing domain NRY95_17250 PF04151 Bacterial pre-peptidase C-terminal domain NRY95_17250 PF00082 Subtilase family NRY95_17255 PF00082 Subtilase family NRY95_17255 PF04151 Bacterial pre-peptidase C-terminal domain NRY95_17260 PF01063 Amino-transferase class IV NRY95_17275 PF02233 NAD(P) transhydrogenase beta subunit NRY95_17285 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NRY95_17305 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NRY95_17305 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NRY95_17325 PF00476 DNA polymerase family A NRY95_17325 PF01612 3'-5' exonuclease NRY95_17325 PF01367 5'-3' exonuclease, C-terminal SAM fold NRY95_17325 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NRY95_17330 PF00293 NUDIX domain NRY95_17350 PF00561 alpha/beta hydrolase fold NRY95_17355 PF17827 PrmC N-terminal domain NRY95_17355 PF05175 Methyltransferase small domain NRY95_17360 PF00578 AhpC/TSA family NRY95_17360 PF10417 C-terminal domain of 1-Cys peroxiredoxin NRY95_17365 PF13192 Thioredoxin domain NRY95_17365 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRY95_17370 PF03466 LysR substrate binding domain NRY95_17370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_17380 PF14760 Rnk N-terminus NRY95_17380 PF01272 Transcription elongation factor, GreA/GreB, C-term NRY95_17385 PF00923 Transaldolase/Fructose-6-phosphate aldolase NRY95_17395 PF01625 Peptide methionine sulfoxide reductase NRY95_17405 PF00072 Response regulator receiver domain NRY95_17405 PF00196 Bacterial regulatory proteins, luxR family NRY95_17410 PF17149 Periplasmic sensor domain found in signal transduction proteins NRY95_17410 PF00672 HAMP domain NRY95_17410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_17410 PF00512 His Kinase A (phospho-acceptor) domain NRY95_17410 PF01627 Hpt domain NRY95_17410 PF00072 Response regulator receiver domain NRY95_17415 PF00072 Response regulator receiver domain NRY95_17415 PF00990 Diguanylate cyclase, GGDEF domain NRY95_17430 PF00749 tRNA synthetases class I (E and Q), catalytic domain NRY95_17430 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NRY95_17440 PF00892 EamA-like transporter family NRY95_17460 PF18125 RlmM ferredoxin-like domain NRY95_17460 PF01728 FtsJ-like methyltransferase NRY95_17465 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRY95_17465 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NRY95_17485 PF01494 FAD binding domain NRY95_17490 PF01494 FAD binding domain NRY95_17495 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor NRY95_17495 PF07963 Prokaryotic N-terminal methylation motif NRY95_17500 PF05567 Neisseria PilC beta-propeller domain NRY95_17530 PF01923 Cobalamin adenosyltransferase NRY95_17535 PF00850 Histone deacetylase domain NRY95_17540 PF04453 LPS transport system D NRY95_17540 PF03968 OstA-like protein NRY95_17545 PF09312 SurA N-terminal domain NRY95_17545 PF00639 PPIC-type PPIASE domain NRY95_17550 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NRY95_17555 PF00398 Ribosomal RNA adenine dimethylase NRY95_17560 PF04379 ApaG domain NRY95_17565 PF00149 Calcineurin-like phosphoesterase NRY95_17570 PF00186 Dihydrofolate reductase NRY95_17575 PF00303 Thymidylate synthase NRY95_17580 PF01790 Prolipoprotein diacylglyceryl transferase NRY95_17595 PF04011 LemA family NRY95_17600 PF03741 Integral membrane protein TerC family NRY95_17605 PF01219 Prokaryotic diacylglycerol kinase NRY95_17615 PF00486 Transcriptional regulatory protein, C terminal NRY95_17615 PF00072 Response regulator receiver domain NRY95_17620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_17620 PF00512 His Kinase A (phospho-acceptor) domain NRY95_17620 PF07689 KaiB domain NRY95_17625 PF00873 AcrB/AcrD/AcrF family NRY95_17630 PF13533 Biotin-lipoyl like NRY95_17635 PF02321 Outer membrane efflux protein NRY95_17640 PF00512 His Kinase A (phospho-acceptor) domain NRY95_17640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_17640 PF08521 Two-component sensor kinase N-terminal NRY95_17645 PF00072 Response regulator receiver domain NRY95_17645 PF00486 Transcriptional regulatory protein, C terminal NRY95_17650 PF13472 GDSL-like Lipase/Acylhydrolase family NRY95_17655 PF00005 ABC transporter NRY95_17665 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NRY95_17675 PF00005 ABC transporter NRY95_17680 PF00528 Binding-protein-dependent transport system inner membrane component NRY95_17700 PF00593 TonB dependent receptor NRY95_17700 PF07715 TonB-dependent Receptor Plug Domain NRY95_17710 PF00248 Aldo/keto reductase family NRY95_17715 PF07670 Nucleoside recognition NRY95_17715 PF07662 Na+ dependent nucleoside transporter C-terminus NRY95_17715 PF01773 Na+ dependent nucleoside transporter N-terminus NRY95_17720 PF00294 pfkB family carbohydrate kinase NRY95_17720 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NRY95_17730 PF01207 Dihydrouridine synthase (Dus) NRY95_17770 PF02773 S-adenosylmethionine synthetase, C-terminal domain NRY95_17770 PF02772 S-adenosylmethionine synthetase, central domain NRY95_17770 PF00438 S-adenosylmethionine synthetase, N-terminal domain NRY95_17775 PF00328 Histidine phosphatase superfamily (branch 2) NRY95_17800 PF00311 Phosphoenolpyruvate carboxylase NRY95_17805 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NRY95_17805 PF05221 S-adenosyl-L-homocysteine hydrolase NRY95_17835 PF00128 Alpha amylase, catalytic domain NRY95_17840 PF02219 Methylenetetrahydrofolate reductase NRY95_17855 PF01638 HxlR-like helix-turn-helix NRY95_17870 PF00293 NUDIX domain NRY95_17880 PF02810 SEC-C motif NRY95_17880 PF07517 SecA DEAD-like domain NRY95_17880 PF01043 SecA preprotein cross-linking domain NRY95_17880 PF07516 SecA Wing and Scaffold domain NRY95_17885 PF08525 Opacity-associated protein A N-terminal motif NRY95_17885 PF01551 Peptidase family M23 NRY95_17885 PF01476 LysM domain NRY95_17895 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NRY95_17900 PF00091 Tubulin/FtsZ family, GTPase domain NRY95_17900 PF12327 FtsZ family, C-terminal domain NRY95_17905 PF02491 SHS2 domain inserted in FTSA NRY95_17910 PF03799 Cell division protein FtsQ NRY95_17910 PF08478 POTRA domain, FtsQ-type NRY95_17915 PF07478 D-ala D-ala ligase C-terminus NRY95_17915 PF01820 D-ala D-ala ligase N-terminus NRY95_17920 PF01225 Mur ligase family, catalytic domain NRY95_17920 PF02875 Mur ligase family, glutamate ligase domain NRY95_17920 PF08245 Mur ligase middle domain NRY95_17925 PF04101 Glycosyltransferase family 28 C-terminal domain NRY95_17925 PF03033 Glycosyltransferase family 28 N-terminal domain NRY95_17930 PF01098 Cell cycle protein NRY95_17935 PF00953 Glycosyl transferase family 4 NRY95_17940 PF01225 Mur ligase family, catalytic domain NRY95_17940 PF02875 Mur ligase family, glutamate ligase domain NRY95_17940 PF08245 Mur ligase middle domain NRY95_17945 PF08245 Mur ligase middle domain NRY95_17945 PF02875 Mur ligase family, glutamate ligase domain NRY95_17945 PF01225 Mur ligase family, catalytic domain NRY95_17950 PF03717 Penicillin-binding Protein dimerisation domain NRY95_17950 PF00905 Penicillin binding protein transpeptidase domain NRY95_17955 PF04999 Cell division protein FtsL NRY95_17960 PF01795 MraW methylase family NRY95_17965 PF02381 MraZ protein, putative antitoxin-like NRY95_17985 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRY95_17995 PF02021 Uncharacterised protein family UPF0102 NRY95_18000 PF04307 LexA-binding, inner membrane-associated putative hydrolase NRY95_18005 PF01565 FAD binding domain NRY95_18005 PF02913 FAD linked oxidases, C-terminal domain NRY95_18020 PF00486 Transcriptional regulatory protein, C terminal NRY95_18020 PF00072 Response regulator receiver domain NRY95_18025 PF13493 Domain of unknown function (DUF4118) NRY95_18025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_18025 PF00512 His Kinase A (phospho-acceptor) domain NRY95_18025 PF02702 Osmosensitive K+ channel His kinase sensor domain NRY95_18025 PF13492 GAF domain NRY95_18030 PF02669 K+-transporting ATPase, c chain NRY95_18040 PF03814 Potassium-transporting ATPase A subunit NRY95_18065 PF00586 AIR synthase related protein, N-terminal domain NRY95_18065 PF02769 AIR synthase related protein, C-terminal domain NRY95_18070 PF01029 NusB family NRY95_18075 PF00885 6,7-dimethyl-8-ribityllumazine synthase NRY95_18080 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NRY95_18080 PF00925 GTP cyclohydrolase II NRY95_18085 PF00677 Lumazine binding domain NRY95_18090 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NRY95_18090 PF01872 RibD C-terminal domain NRY95_18100 PF03477 ATP cone domain NRY95_18105 PF00464 Serine hydroxymethyltransferase NRY95_18120 PF07690 Major Facilitator Superfamily NRY95_18125 PF00005 ABC transporter NRY95_18125 PF12848 ABC transporter NRY95_18130 PF01327 Polypeptide deformylase NRY95_18140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRY95_18140 PF02770 Acyl-CoA dehydrogenase, middle domain NRY95_18140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRY95_18150 PF00501 AMP-binding enzyme NRY95_18150 PF13193 AMP-binding enzyme C-terminal domain NRY95_18155 PF00550 Phosphopantetheine attachment site NRY95_18160 PF03062 MBOAT, membrane-bound O-acyltransferase family NRY95_18180 PF13632 Glycosyl transferase family group 2 NRY95_18180 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NRY95_18190 PF02350 UDP-N-acetylglucosamine 2-epimerase NRY95_18195 PF04107 Glutamate-cysteine ligase family 2(GCS2) NRY95_18215 PF12833 Helix-turn-helix domain NRY95_18225 PF01926 50S ribosome-binding GTPase NRY95_18230 PF00034 Cytochrome c NRY95_18235 PF01323 DSBA-like thioredoxin domain NRY95_18240 PF01323 DSBA-like thioredoxin domain NRY95_18250 PF00593 TonB dependent receptor NRY95_18250 PF07715 TonB-dependent Receptor Plug Domain NRY95_18255 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain NRY95_18255 PF01464 Transglycosylase SLT domain NRY95_18260 PF12627 Probable RNA and SrmB- binding site of polymerase A NRY95_18260 PF01966 HD domain NRY95_18260 PF01743 Poly A polymerase head domain NRY95_18265 PF01979 Amidohydrolase family NRY95_18270 PF01380 SIS domain NRY95_18275 PF00356 Bacterial regulatory proteins, lacI family NRY95_18280 PF07690 Major Facilitator Superfamily NRY95_18285 PF00392 Bacterial regulatory proteins, gntR family NRY95_18285 PF07702 UTRA domain NRY95_18300 PF02837 Glycosyl hydrolases family 2, sugar binding domain NRY95_18300 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NRY95_18300 PF00703 Glycosyl hydrolases family 2 NRY95_18300 PF16355 Domain of unknown function (DUF4982) NRY95_18300 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 NRY95_18325 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NRY95_18335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_18335 PF00512 His Kinase A (phospho-acceptor) domain NRY95_18340 PF00072 Response regulator receiver domain NRY95_18345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_18345 PF00512 His Kinase A (phospho-acceptor) domain NRY95_18345 PF00989 PAS fold NRY95_18355 PF04972 BON domain NRY95_18360 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NRY95_18360 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NRY95_18365 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NRY95_18365 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain NRY95_18375 PF08338 Domain of unknown function (DUF1731) NRY95_18375 PF01370 NAD dependent epimerase/dehydratase family NRY95_18390 PF01555 DNA methylase NRY95_18405 PF01467 Cytidylyltransferase-like NRY95_18405 PF00293 NUDIX domain NRY95_18410 PF07745 Glycosyl hydrolase family 53 NRY95_18430 PF17804 Tail specific protease N-terminal domain NRY95_18430 PF00595 PDZ domain NRY95_18430 PF11818 C-terminal domain of tail specific protease (DUF3340) NRY95_18430 PF03572 Peptidase family S41 NRY95_18435 PF04055 Radical SAM superfamily NRY95_18435 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NRY95_18440 PF03099 Biotin/lipoate A/B protein ligase family NRY95_18445 PF04359 Protein of unknown function (DUF493) NRY95_18455 PF07943 Penicillin-binding protein 5, C-terminal domain NRY95_18455 PF00768 D-alanyl-D-alanine carboxypeptidase NRY95_18460 PF03330 Lytic transglycolase NRY95_18460 PF05036 Sporulation related domain NRY95_18465 PF13406 Transglycosylase SLT domain NRY95_18470 PF00171 Aldehyde dehydrogenase family NRY95_18475 PF02233 NAD(P) transhydrogenase beta subunit NRY95_18480 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NRY95_18485 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NRY95_18485 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NRY95_18485 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NRY95_18490 PF00295 Glycosyl hydrolases family 28 NRY95_18500 PF01098 Cell cycle protein NRY95_18505 PF03717 Penicillin-binding Protein dimerisation domain NRY95_18505 PF00905 Penicillin binding protein transpeptidase domain NRY95_18515 PF04085 rod shape-determining protein MreC NRY95_18525 PF00294 pfkB family carbohydrate kinase NRY95_18530 PF01590 GAF domain NRY95_18530 PF02954 Bacterial regulatory protein, Fis family NRY95_18530 PF00158 Sigma-54 interaction domain NRY95_18540 PF08240 Alcohol dehydrogenase GroES-like domain NRY95_18540 PF00107 Zinc-binding dehydrogenase NRY95_18550 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP NRY95_18550 PF00034 Cytochrome c NRY95_18550 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NRY95_18555 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRY95_18560 PF13360 PQQ-like domain NRY95_18575 PF00561 alpha/beta hydrolase fold NRY95_18575 PF00364 Biotin-requiring enzyme NRY95_18580 PF11838 ERAP1-like C-terminal domain NRY95_18580 PF01433 Peptidase family M1 domain NRY95_18585 PF01209 ubiE/COQ5 methyltransferase family NRY95_18595 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NRY95_18605 PF00004 ATPase family associated with various cellular activities (AAA) NRY95_18605 PF07724 AAA domain (Cdc48 subfamily) NRY95_18605 PF10431 C-terminal, D2-small domain, of ClpB protein NRY95_18610 PF00227 Proteasome subunit NRY95_18620 PF02899 Phage integrase, N-terminal SAM-like domain NRY95_18620 PF00589 Phage integrase family NRY95_18630 PF01678 Diaminopimelate epimerase NRY95_18640 PF04304 Protein of unknown function (DUF454) NRY95_18650 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NRY95_18650 PF00326 Prolyl oligopeptidase family NRY95_18655 PF00155 Aminotransferase class I and II NRY95_18670 PF00326 Prolyl oligopeptidase family NRY95_18670 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NRY95_18685 PF01638 HxlR-like helix-turn-helix NRY95_18700 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NRY95_18700 PF03900 Porphobilinogen deaminase, C-terminal domain NRY95_18705 PF00072 Response regulator receiver domain NRY95_18705 PF04397 LytTr DNA-binding domain NRY95_18715 PF13632 Glycosyl transferase family group 2 NRY95_18720 PF08448 PAS fold NRY95_18720 PF00512 His Kinase A (phospho-acceptor) domain NRY95_18720 PF13188 PAS domain NRY95_18720 PF00072 Response regulator receiver domain NRY95_18720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_18725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_18725 PF00072 Response regulator receiver domain NRY95_18735 PF08323 Starch synthase catalytic domain NRY95_18735 PF00534 Glycosyl transferases group 1 NRY95_18740 PF00128 Alpha amylase, catalytic domain NRY95_18740 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRY95_18740 PF02806 Alpha amylase, C-terminal all-beta domain NRY95_18745 PF00128 Alpha amylase, catalytic domain NRY95_18745 PF11941 Domain of unknown function (DUF3459) NRY95_18750 PF02446 4-alpha-glucanotransferase NRY95_18755 PF00128 Alpha amylase, catalytic domain NRY95_18765 PF00128 Alpha amylase, catalytic domain NRY95_18765 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRY95_18775 PF10414 Sirohaem synthase dimerisation region NRY95_18775 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NRY95_18775 PF14824 Sirohaem biosynthesis protein central NRY95_18780 PF07690 Major Facilitator Superfamily NRY95_18795 PF02954 Bacterial regulatory protein, Fis family NRY95_18795 PF00072 Response regulator receiver domain NRY95_18795 PF00158 Sigma-54 interaction domain NRY95_18800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_18800 PF00512 His Kinase A (phospho-acceptor) domain NRY95_18805 PF00205 Thiamine pyrophosphate enzyme, central domain NRY95_18805 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NRY95_18805 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NRY95_18810 PF00106 short chain dehydrogenase NRY95_18815 PF00487 Fatty acid desaturase NRY95_18820 PF00970 Oxidoreductase FAD-binding domain NRY95_18820 PF00111 2Fe-2S iron-sulfur cluster binding domain NRY95_18820 PF00175 Oxidoreductase NAD-binding domain NRY95_18825 PF00440 Bacterial regulatory proteins, tetR family NRY95_18835 PF06745 KaiC NRY95_18840 PF00563 EAL domain NRY95_18840 PF00990 Diguanylate cyclase, GGDEF domain NRY95_18840 PF03707 Bacterial signalling protein N terminal repeat NRY95_18850 PF05974 Domain of unknown function (DUF892) NRY95_18855 PF05974 Domain of unknown function (DUF892) NRY95_18865 PF00672 HAMP domain NRY95_18865 PF02203 Tar ligand binding domain homologue NRY95_18865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_18880 PF00440 Bacterial regulatory proteins, tetR family NRY95_18885 PF00667 FAD binding domain NRY95_18885 PF00258 Flavodoxin NRY95_18885 PF00175 Oxidoreductase NAD-binding domain NRY95_18885 PF00067 Cytochrome P450 NRY95_18900 PF12706 Beta-lactamase superfamily domain NRY95_18920 PF07995 Glucose / Sorbosone dehydrogenase NRY95_18930 PF00356 Bacterial regulatory proteins, lacI family NRY95_18935 PF07971 Glycosyl hydrolase family 92 NRY95_18935 PF17678 Glycosyl hydrolase family 92 N-terminal domain NRY95_18955 PF00360 Phytochrome region NRY95_18955 PF00563 EAL domain NRY95_18955 PF01590 GAF domain NRY95_18955 PF00990 Diguanylate cyclase, GGDEF domain NRY95_18980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRY95_18985 PF01523 Putative modulator of DNA gyrase NRY95_19005 PF00005 ABC transporter NRY95_19020 PF00005 ABC transporter NRY95_19030 PF00005 ABC transporter NRY95_19035 PF00392 Bacterial regulatory proteins, gntR family NRY95_19040 PF02661 Fic/DOC family NRY95_19080 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NRY95_19080 PF02806 Alpha amylase, C-terminal all-beta domain NRY95_19080 PF00128 Alpha amylase, catalytic domain NRY95_19085 PF00128 Alpha amylase, catalytic domain NRY95_19085 PF16657 Maltogenic Amylase, C-terminal domain NRY95_19090 PF00128 Alpha amylase, catalytic domain NRY95_19090 PF11896 Domain of unknown function (DUF3416) NRY95_19095 PF07971 Glycosyl hydrolase family 92 NRY95_19095 PF17678 Glycosyl hydrolase family 92 N-terminal domain NRY95_19100 PF00356 Bacterial regulatory proteins, lacI family NRY95_19100 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NRY95_19105 PF07690 Major Facilitator Superfamily NRY95_19115 PF04545 Sigma-70, region 4 NRY95_19115 PF04542 Sigma-70 region 2 NRY95_19115 PF00140 Sigma-70 factor, region 1.2 NRY95_19115 PF04546 Sigma-70, non-essential region NRY95_19115 PF03979 Sigma-70 factor, region 1.1 NRY95_19115 PF04539 Sigma-70 region 3 NRY95_19120 PF02580 D-Tyr-tRNA(Tyr) deacylase NRY95_19135 PF00925 GTP cyclohydrolase II NRY95_19155 PF00535 Glycosyl transferase family 2 NRY95_19170 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase NRY95_19175 PF01189 16S rRNA methyltransferase RsmB/F NRY95_19175 PF01029 NusB family NRY95_19180 PF02911 Formyl transferase, C-terminal domain NRY95_19180 PF00551 Formyl transferase NRY95_19185 PF01327 Polypeptide deformylase NRY95_19190 PF01476 LysM domain NRY95_19195 PF02481 DNA recombination-mediator protein A NRY95_19195 PF17782 DprA winged helix domain NRY95_19200 PF04361 Protein of unknown function (DUF494) NRY95_19205 PF00114 Pilin (bacterial filament) NRY95_19205 PF07963 Prokaryotic N-terminal methylation motif NRY95_19210 PF06271 RDD family NRY95_19215 PF13368 Topoisomerase C-terminal repeat NRY95_19215 PF01131 DNA topoisomerase NRY95_19215 PF01751 Toprim domain NRY95_19220 PF01300 Telomere recombination NRY95_19235 PF14497 Glutathione S-transferase, C-terminal domain NRY95_19235 PF02798 Glutathione S-transferase, N-terminal domain NRY95_19250 PF01242 6-pyruvoyl tetrahydropterin synthase NRY95_19265 PF13185 GAF domain NRY95_19275 PF07715 TonB-dependent Receptor Plug Domain NRY95_19275 PF00593 TonB dependent receptor NRY95_19280 PF03466 LysR substrate binding domain NRY95_19280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_19295 PF16123 Hydroxyacylglutathione hydrolase C-terminus NRY95_19295 PF00753 Metallo-beta-lactamase superfamily NRY95_19300 PF13419 Haloacid dehalogenase-like hydrolase NRY95_19305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_19305 PF03466 LysR substrate binding domain NRY95_19310 PF13460 NAD(P)H-binding NRY95_19320 PF11798 IMS family HHH motif NRY95_19320 PF11799 impB/mucB/samB family C-terminal domain NRY95_19320 PF00817 impB/mucB/samB family NRY95_19325 PF07977 FabA-like domain NRY95_19330 PF00109 Beta-ketoacyl synthase, N-terminal domain NRY95_19330 PF02801 Beta-ketoacyl synthase, C-terminal domain NRY95_19335 PF01432 Peptidase family M3 NRY95_19340 PF00291 Pyridoxal-phosphate dependent enzyme NRY95_19350 PF00403 Heavy-metal-associated domain NRY95_19355 PF00376 MerR family regulatory protein NRY95_19355 PF09278 MerR, DNA binding NRY95_19365 PF00394 Multicopper oxidase NRY95_19365 PF07731 Multicopper oxidase NRY95_19365 PF07732 Multicopper oxidase NRY95_19370 PF05275 Copper resistance protein B precursor (CopB) NRY95_19380 PF13193 AMP-binding enzyme C-terminal domain NRY95_19380 PF00501 AMP-binding enzyme NRY95_19385 PF00171 Aldehyde dehydrogenase family NRY95_19400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NRY95_19400 PF02770 Acyl-CoA dehydrogenase, middle domain NRY95_19400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NRY95_19410 PF00378 Enoyl-CoA hydratase/isomerase NRY95_19415 PF00378 Enoyl-CoA hydratase/isomerase NRY95_19415 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NRY95_19415 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NRY95_19420 PF02803 Thiolase, C-terminal domain NRY95_19420 PF00108 Thiolase, N-terminal domain NRY95_19425 PF00175 Oxidoreductase NAD-binding domain NRY95_19425 PF00111 2Fe-2S iron-sulfur cluster binding domain NRY95_19425 PF00970 Oxidoreductase FAD-binding domain NRY95_19440 PF00196 Bacterial regulatory proteins, luxR family NRY95_19440 PF00072 Response regulator receiver domain NRY95_19445 PF01380 SIS domain NRY95_19450 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NRY95_19455 PF00005 ABC transporter NRY95_19465 PF02687 FtsX-like permease family NRY95_19465 PF12704 MacB-like periplasmic core domain NRY95_19475 PF00005 ABC transporter NRY95_19475 PF12704 MacB-like periplasmic core domain NRY95_19475 PF02687 FtsX-like permease family NRY95_19480 PF12704 MacB-like periplasmic core domain NRY95_19480 PF02687 FtsX-like permease family NRY95_19480 PF00005 ABC transporter NRY95_19485 PF02687 FtsX-like permease family NRY95_19485 PF12704 MacB-like periplasmic core domain NRY95_19495 PF00072 Response regulator receiver domain NRY95_19495 PF02954 Bacterial regulatory protein, Fis family NRY95_19495 PF00158 Sigma-54 interaction domain NRY95_19500 PF00512 His Kinase A (phospho-acceptor) domain NRY95_19500 PF00989 PAS fold NRY95_19500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_19510 PF00132 Bacterial transferase hexapeptide (six repeats) NRY95_19510 PF14602 Hexapeptide repeat of succinyl-transferase NRY95_19510 PF12804 MobA-like NTP transferase domain NRY95_19525 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NRY95_19525 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NRY95_19530 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRY95_19530 PF02874 ATP synthase alpha/beta family, beta-barrel domain NRY95_19535 PF00231 ATP synthase NRY95_19540 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NRY95_19540 PF00306 ATP synthase alpha/beta chain, C terminal domain NRY95_19540 PF02874 ATP synthase alpha/beta family, beta-barrel domain NRY95_19545 PF00213 ATP synthase delta (OSCP) subunit NRY95_19550 PF00430 ATP synthase B/B' CF(0) NRY95_19555 PF00137 ATP synthase subunit C NRY95_19560 PF00119 ATP synthase A chain NRY95_19575 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRY95_19575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRY95_19580 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRY95_19580 PF00364 Biotin-requiring enzyme NRY95_19580 PF02817 e3 binding domain NRY95_19605 PF03180 NLPA lipoprotein NRY95_19610 PF00528 Binding-protein-dependent transport system inner membrane component NRY95_19615 PF09383 NIL domain NRY95_19615 PF00005 ABC transporter NRY95_19620 PF00892 EamA-like transporter family NRY95_19625 PF04461 Protein of unknown function (DUF520) NRY95_19630 PF08240 Alcohol dehydrogenase GroES-like domain NRY95_19630 PF00107 Zinc-binding dehydrogenase NRY95_19635 PF00171 Aldehyde dehydrogenase family NRY95_19640 PF07859 alpha/beta hydrolase fold NRY95_19645 PF01494 FAD binding domain NRY95_19650 PF00106 short chain dehydrogenase NRY95_19655 PF00111 2Fe-2S iron-sulfur cluster binding domain NRY95_19655 PF00175 Oxidoreductase NAD-binding domain NRY95_19655 PF00970 Oxidoreductase FAD-binding domain NRY95_19660 PF00866 Ring hydroxylating beta subunit NRY95_19665 PF00355 Rieske [2Fe-2S] domain NRY95_19665 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NRY95_19670 PF00775 Dioxygenase NRY95_19670 PF04444 Catechol dioxygenase N terminus NRY95_19675 PF02426 Muconolactone delta-isomerase NRY95_19680 PF13378 Enolase C-terminal domain-like NRY95_19680 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NRY95_19685 PF03466 LysR substrate binding domain NRY95_19685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_19695 PF00849 RNA pseudouridylate synthase NRY95_19695 PF01479 S4 domain NRY95_19700 PF05175 Methyltransferase small domain NRY95_19700 PF08468 Methyltransferase small domain N-terminal NRY95_19710 PF07995 Glucose / Sorbosone dehydrogenase NRY95_19720 PF01627 Hpt domain NRY95_19720 PF00512 His Kinase A (phospho-acceptor) domain NRY95_19720 PF00989 PAS fold NRY95_19720 PF00072 Response regulator receiver domain NRY95_19720 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRY95_19720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_19740 PF00842 Alanine racemase, C-terminal domain NRY95_19740 PF01168 Alanine racemase, N-terminal domain NRY95_19745 PF01266 FAD dependent oxidoreductase NRY95_19750 PF01037 Lrp/AsnC ligand binding domain NRY95_19765 PF01641 SelR domain NRY95_19770 PF01618 MotA/TolQ/ExbB proton channel family NRY95_19775 PF13677 Membrane MotB of proton-channel complex MotA/MotB NRY95_19775 PF00691 OmpA family NRY95_19805 PF01061 ABC-2 type transporter NRY95_19810 PF00005 ABC transporter NRY95_19815 PF00999 Sodium/hydrogen exchanger family NRY95_19820 PF05711 Macrocin-O-methyltransferase (TylF) NRY95_19825 PF02469 Fasciclin domain NRY95_19830 PF03167 Uracil DNA glycosylase superfamily NRY95_19840 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NRY95_19845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_19845 PF03466 LysR substrate binding domain NRY95_19850 PF03358 NADPH-dependent FMN reductase NRY95_19860 PF03466 LysR substrate binding domain NRY95_19860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_19865 PF00248 Aldo/keto reductase family NRY95_19870 PF00248 Aldo/keto reductase family NRY95_19885 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRY95_19885 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRY95_19890 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family NRY95_19910 PF00990 Diguanylate cyclase, GGDEF domain NRY95_19915 PF00355 Rieske [2Fe-2S] domain NRY95_19920 PF00563 EAL domain NRY95_19920 PF08447 PAS fold NRY95_19920 PF08448 PAS fold NRY95_19920 PF00990 Diguanylate cyclase, GGDEF domain NRY95_19935 PF07715 TonB-dependent Receptor Plug Domain NRY95_19935 PF00593 TonB dependent receptor NRY95_19945 PF00072 Response regulator receiver domain NRY95_19945 PF04397 LytTr DNA-binding domain NRY95_19950 PF06580 Histidine kinase NRY95_19950 PF07694 5TMR of 5TMR-LYT NRY95_19975 PF13520 Amino acid permease NRY95_19985 PF00553 Cellulose binding domain NRY95_19985 PF00150 Cellulase (glycosyl hydrolase family 5) NRY95_19990 PF00675 Insulinase (Peptidase family M16) NRY95_19990 PF05193 Peptidase M16 inactive domain NRY95_20000 PF01204 Trehalase NRY95_20005 PF01464 Transglycosylase SLT domain NRY95_20015 PF00497 Bacterial extracellular solute-binding proteins, family 3 NRY95_20035 PF12833 Helix-turn-helix domain NRY95_20035 PF06719 AraC-type transcriptional regulator N-terminus NRY95_20045 PF01544 CorA-like Mg2+ transporter protein NRY95_20050 PF00324 Amino acid permease NRY95_20055 PF00892 EamA-like transporter family NRY95_20065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_20065 PF03466 LysR substrate binding domain NRY95_20070 PF02525 Flavodoxin-like fold NRY95_20080 PF02463 RecF/RecN/SMC N terminal domain NRY95_20085 PF02449 Beta-galactosidase NRY95_20085 PF08533 Beta-galactosidase C-terminal domain NRY95_20085 PF08532 Beta-galactosidase trimerisation domain NRY95_20090 PF17189 Glycosyl hydrolase family 30 beta sandwich domain NRY95_20100 PF07804 HipA-like C-terminal domain NRY95_20135 PF00733 Asparagine synthase NRY95_20135 PF13537 Glutamine amidotransferase domain NRY95_20140 PF00326 Prolyl oligopeptidase family NRY95_20145 PF00593 TonB dependent receptor NRY95_20145 PF07715 TonB-dependent Receptor Plug Domain NRY95_20210 PF13274 Protein of unknown function (DUF4065) NRY95_20235 PF17831 Pyruvate dehydrogenase E1 component middle domain NRY95_20235 PF00456 Transketolase, thiamine diphosphate binding domain NRY95_20240 PF02743 Cache domain NRY95_20240 PF00672 HAMP domain NRY95_20240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_20260 PF04954 Siderophore-interacting protein NRY95_20260 PF08021 Siderophore-interacting FAD-binding domain NRY95_20285 PF04264 YceI-like domain NRY95_20290 PF00881 Nitroreductase family NRY95_20310 PF03009 Glycerophosphoryl diester phosphodiesterase family NRY95_20325 PF08335 GlnD PII-uridylyltransferase NRY95_20325 PF03710 Glutamate-ammonia ligase adenylyltransferase NRY95_20335 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NRY95_20335 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NRY95_20340 PF01541 GIY-YIG catalytic domain NRY95_20345 PF00793 DAHP synthetase I family NRY95_20350 PF07715 TonB-dependent Receptor Plug Domain NRY95_20350 PF00593 TonB dependent receptor NRY95_20365 PF01555 DNA methylase NRY95_20370 PF00270 DEAD/DEAH box helicase NRY95_20370 PF13749 Putative ATP-dependent DNA helicase recG C-terminal NRY95_20370 PF17191 RecG wedge domain NRY95_20375 PF00271 Helicase conserved C-terminal domain NRY95_20375 PF00176 SNF2 family N-terminal domain NRY95_20380 PF00118 TCP-1/cpn60 chaperonin family NRY95_20385 PF00166 Chaperonin 10 Kd subunit NRY95_20390 PF04231 Endonuclease I NRY95_20395 PF03091 CutA1 divalent ion tolerance protein NRY95_20400 PF11412 Disulphide bond corrector protein DsbC NRY95_20400 PF02683 Cytochrome C biogenesis protein transmembrane region NRY95_20405 PF00578 AhpC/TSA family NRY95_20410 PF16363 GDP-mannose 4,6 dehydratase NRY95_20415 PF00483 Nucleotidyl transferase NRY95_20420 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NRY95_20425 PF04321 RmlD substrate binding domain NRY95_20430 PF14667 Polysaccharide biosynthesis C-terminal domain NRY95_20430 PF01943 Polysaccharide biosynthesis protein NRY95_20435 PF13439 Glycosyltransferase Family 4 NRY95_20435 PF00534 Glycosyl transferases group 1 NRY95_20455 PF11203 Putative type VII ESX secretion system translocon, EccE NRY95_20460 PF10531 SLBB domain NRY95_20460 PF18412 Outer-membrane lipoprotein Wza C-terminal domain NRY95_20460 PF02563 Polysaccharide biosynthesis/export protein NRY95_20465 PF01451 Low molecular weight phosphotyrosine protein phosphatase NRY95_20470 PF13614 AAA domain NRY95_20470 PF13807 G-rich domain on putative tyrosine kinase NRY95_20470 PF02706 Chain length determinant protein NRY95_20480 PF02397 Bacterial sugar transferase NRY95_20495 PF00563 EAL domain NRY95_20495 PF10442 FIST C domain NRY95_20495 PF00990 Diguanylate cyclase, GGDEF domain NRY95_20495 PF08495 FIST N domain NRY95_20500 PF02796 Helix-turn-helix domain of resolvase NRY95_20500 PF00239 Resolvase, N terminal domain NRY95_20505 PF02796 Helix-turn-helix domain of resolvase NRY95_20505 PF00239 Resolvase, N terminal domain NRY95_20515 PF02798 Glutathione S-transferase, N-terminal domain NRY95_20515 PF00043 Glutathione S-transferase, C-terminal domain NRY95_20525 PF01220 Dehydroquinase class II NRY95_20530 PF00364 Biotin-requiring enzyme NRY95_20540 PF02785 Biotin carboxylase C-terminal domain NRY95_20540 PF00289 Biotin carboxylase, N-terminal domain NRY95_20540 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NRY95_20575 PF02954 Bacterial regulatory protein, Fis family NRY95_20605 PF00782 Dual specificity phosphatase, catalytic domain NRY95_20615 PF01066 CDP-alcohol phosphatidyltransferase NRY95_20620 PF01808 AICARFT/IMPCHase bienzyme NRY95_20620 PF02142 MGS-like domain NRY95_20630 PF02843 Phosphoribosylglycinamide synthetase, C domain NRY95_20630 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NRY95_20630 PF02844 Phosphoribosylglycinamide synthetase, N domain NRY95_20640 PF07715 TonB-dependent Receptor Plug Domain NRY95_20640 PF00593 TonB dependent receptor NRY95_20645 PF07715 TonB-dependent Receptor Plug Domain NRY95_20645 PF00593 TonB dependent receptor NRY95_20650 PF12805 FUSC-like inner membrane protein yccS NRY95_20655 PF07690 Major Facilitator Superfamily NRY95_20660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_20660 PF03466 LysR substrate binding domain NRY95_20690 PF09297 NADH pyrophosphatase zinc ribbon domain NRY95_20690 PF00293 NUDIX domain NRY95_20690 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain NRY95_20695 PF01521 Iron-sulphur cluster biosynthesis NRY95_20715 PF00563 EAL domain NRY95_20715 PF00072 Response regulator receiver domain NRY95_20715 PF00990 Diguanylate cyclase, GGDEF domain NRY95_20720 PF00672 HAMP domain NRY95_20720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_20720 PF00072 Response regulator receiver domain NRY95_20720 PF01627 Hpt domain NRY95_20720 PF00512 His Kinase A (phospho-acceptor) domain NRY95_20720 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NRY95_20725 PF00210 Ferritin-like domain NRY95_20730 PF04324 BFD-like [2Fe-2S] binding domain NRY95_20735 PF00293 NUDIX domain NRY95_20750 PF00380 Ribosomal protein S9/S16 NRY95_20755 PF00572 Ribosomal protein L13 NRY95_20760 PF03232 Ubiquinone biosynthesis protein COQ7 NRY95_20770 PF00893 Small Multidrug Resistance protein NRY95_20775 PF02675 S-adenosylmethionine decarboxylase NRY95_20780 PF00325 Bacterial regulatory proteins, crp family NRY95_20780 PF00027 Cyclic nucleotide-binding domain NRY95_20785 PF01925 Sulfite exporter TauE/SafE NRY95_20790 PF03425 Carbohydrate binding domain (family 11) NRY95_20790 PF00150 Cellulase (glycosyl hydrolase family 5) NRY95_20790 PF00404 Dockerin type I domain NRY95_20790 PF02156 Glycosyl hydrolase family 26 NRY95_20800 PF00218 Indole-3-glycerol phosphate synthase NRY95_20805 PF02885 Glycosyl transferase family, helical bundle domain NRY95_20805 PF00591 Glycosyl transferase family, a/b domain NRY95_20815 PF00117 Glutamine amidotransferase class-I NRY95_20825 PF01212 Beta-eliminating lyase NRY95_20830 PF04715 Anthranilate synthase component I, N terminal region NRY95_20830 PF00425 chorismate binding enzyme NRY95_20835 PF00781 Diacylglycerol kinase catalytic domain NRY95_20845 PF00834 Ribulose-phosphate 3 epimerase family NRY95_20850 PF00226 DnaJ domain NRY95_20850 PF01556 DnaJ C terminal domain NRY95_20850 PF00684 DnaJ central domain NRY95_20855 PF01259 SAICAR synthetase NRY95_20885 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family NRY95_20890 PF00361 Proton-conducting membrane transporter NRY95_20890 PF13244 Domain of unknown function (DUF4040) NRY95_20890 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NRY95_20890 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NRY95_20895 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NRY95_20900 PF00361 Proton-conducting membrane transporter NRY95_20905 PF01899 Na+/H+ ion antiporter subunit NRY95_20910 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NRY95_20915 PF03334 Na+/H+ antiporter subunit NRY95_20920 PF01699 Sodium/calcium exchanger protein NRY95_20940 PF04209 homogentisate 1,2-dioxygenase NRY95_20945 PF04480 Protein of unknown function (DUF559) NRY95_20950 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRY95_20965 PF00854 POT family NRY95_20980 PF00676 Dehydrogenase E1 component NRY95_20985 PF02779 Transketolase, pyrimidine binding domain NRY95_20985 PF02780 Transketolase, C-terminal domain NRY95_20995 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NRY95_20995 PF02817 e3 binding domain NRY95_20995 PF00364 Biotin-requiring enzyme NRY95_21005 PF07504 Fungalysin/Thermolysin Propeptide Motif NRY95_21005 PF03413 Peptidase propeptide and YPEB domain NRY95_21005 PF01447 Thermolysin metallopeptidase, catalytic domain NRY95_21005 PF02868 Thermolysin metallopeptidase, alpha-helical domain NRY95_21005 PF04151 Bacterial pre-peptidase C-terminal domain NRY95_21010 PF00270 DEAD/DEAH box helicase NRY95_21010 PF00271 Helicase conserved C-terminal domain NRY95_21025 PF13460 NAD(P)H-binding NRY95_21030 PF00294 pfkB family carbohydrate kinase NRY95_21035 PF02308 MgtC family NRY95_21045 PF00990 Diguanylate cyclase, GGDEF domain NRY95_21050 PF05661 Protein of unknown function (DUF808) NRY95_21055 PF02734 DAK2 domain NRY95_21055 PF02733 Dak1 domain NRY95_21065 PF03109 ABC1 family NRY95_21075 PF00924 Mechanosensitive ion channel NRY95_21075 PF12794 Mechanosensitive ion channel inner membrane domain 1 NRY95_21075 PF12795 Mechanosensitive ion channel porin domain NRY95_21080 PF14765 Polyketide synthase dehydratase NRY95_21080 PF00550 Phosphopantetheine attachment site NRY95_21080 PF08659 KR domain NRY95_21080 PF02801 Beta-ketoacyl synthase, C-terminal domain NRY95_21080 PF00107 Zinc-binding dehydrogenase NRY95_21080 PF16197 Ketoacyl-synthetase C-terminal extension NRY95_21080 PF08240 Alcohol dehydrogenase GroES-like domain NRY95_21080 PF00698 Acyl transferase domain NRY95_21080 PF00109 Beta-ketoacyl synthase, N-terminal domain NRY95_21085 PF00328 Histidine phosphatase superfamily (branch 2) NRY95_21100 PF04542 Sigma-70 region 2 NRY95_21100 PF08281 Sigma-70, region 4 NRY95_21100 PF12680 SnoaL-like domain NRY95_21110 PF02678 Pirin NRY95_21110 PF05726 Pirin C-terminal cupin domain NRY95_21155 PF09339 IclR helix-turn-helix domain NRY95_21155 PF01614 Bacterial transcriptional regulator NRY95_21160 PF07690 Major Facilitator Superfamily NRY95_21165 PF05336 L-rhamnose mutarotase NRY95_21170 PF13378 Enolase C-terminal domain-like NRY95_21170 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NRY95_21175 PF01557 Fumarylacetoacetate (FAA) hydrolase family NRY95_21190 PF00248 Aldo/keto reductase family NRY95_21195 PF13419 Haloacid dehalogenase-like hydrolase NRY95_21220 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NRY95_21220 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NRY95_21225 PF00230 Major intrinsic protein NRY95_21230 PF01266 FAD dependent oxidoreductase NRY95_21230 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NRY95_21235 PF08220 DeoR-like helix-turn-helix domain NRY95_21235 PF00455 DeoR C terminal sensor domain NRY95_21240 PF07308 Protein of unknown function (DUF1456) NRY95_21245 PF01966 HD domain NRY95_21245 PF00013 KH domain NRY95_21245 PF12072 Domain of unknown function (DUF3552) NRY95_21250 PF00403 Heavy-metal-associated domain NRY95_21250 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRY95_21250 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NRY95_21260 PF03372 Endonuclease/Exonuclease/phosphatase family NRY95_21275 PF07237 Protein of unknown function (DUF1428) NRY95_21280 PF07715 TonB-dependent Receptor Plug Domain NRY95_21280 PF00593 TonB dependent receptor NRY95_21295 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region NRY95_21295 PF00326 Prolyl oligopeptidase family NRY95_21305 PF05114 Protein of unknown function (DUF692) NRY95_21310 PF00490 Delta-aminolevulinic acid dehydratase NRY95_21330 PF04610 TrbL/VirB6 plasmid conjugal transfer protein NRY95_21375 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region NRY95_21375 PF00326 Prolyl oligopeptidase family NRY95_21380 PF00043 Glutathione S-transferase, C-terminal domain NRY95_21380 PF02798 Glutathione S-transferase, N-terminal domain NRY95_21385 PF03350 Uncharacterized protein family, UPF0114 NRY95_21400 PF00005 ABC transporter NRY95_21405 PF00561 alpha/beta hydrolase fold NRY95_21410 PF01381 Helix-turn-helix NRY95_21425 PF00970 Oxidoreductase FAD-binding domain NRY95_21425 PF00111 2Fe-2S iron-sulfur cluster binding domain NRY95_21425 PF00175 Oxidoreductase NAD-binding domain NRY95_21430 PF00005 ABC transporter NRY95_21435 PF01061 ABC-2 type transporter NRY95_21455 PF04972 BON domain NRY95_21455 PF00691 OmpA family NRY95_21495 PF00263 Bacterial type II and III secretion system protein NRY95_21495 PF03958 Bacterial type II/III secretion system short domain NRY95_21500 PF00437 Type II/IV secretion system protein NRY95_21540 PF01026 TatD related DNase NRY95_21545 PF08482 ATP-dependent helicase C-terminal NRY95_21545 PF00270 DEAD/DEAH box helicase NRY95_21545 PF04408 Helicase associated domain (HA2) NRY95_21545 PF00271 Helicase conserved C-terminal domain NRY95_21555 PF00849 RNA pseudouridylate synthase NRY95_21565 PF00248 Aldo/keto reductase family NRY95_21570 PF16884 N-terminal domain of oxidoreductase NRY95_21570 PF00107 Zinc-binding dehydrogenase NRY95_21575 PF12146 Serine aminopeptidase, S33 NRY95_21590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_21590 PF03466 LysR substrate binding domain NRY95_21595 PF00248 Aldo/keto reductase family NRY95_21615 PF01740 STAS domain NRY95_21615 PF00916 Sulfate permease family NRY95_21640 PF00990 Diguanylate cyclase, GGDEF domain NRY95_21645 PF00463 Isocitrate lyase family NRY95_21650 PF01274 Malate synthase NRY95_21655 PF03466 LysR substrate binding domain NRY95_21655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_21660 PF00999 Sodium/hydrogen exchanger family NRY95_21665 PF12833 Helix-turn-helix domain NRY95_21680 PF12706 Beta-lactamase superfamily domain NRY95_21685 PF10502 Signal peptidase, peptidase S26 NRY95_21690 PF01432 Peptidase family M3 NRY95_21695 PF01112 Asparaginase NRY95_21705 PF04542 Sigma-70 region 2 NRY95_21705 PF08281 Sigma-70, region 4 NRY95_21715 PF00593 TonB dependent receptor NRY95_21715 PF07715 TonB-dependent Receptor Plug Domain NRY95_21725 PF00472 RF-1 domain NRY95_21735 PF00849 RNA pseudouridylate synthase NRY95_21750 PF03109 ABC1 family NRY95_21760 PF07478 D-ala D-ala ligase C-terminus NRY95_21760 PF01820 D-ala D-ala ligase N-terminus NRY95_21770 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family NRY95_21775 PF00144 Beta-lactamase NRY95_21785 PF00501 AMP-binding enzyme NRY95_21795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NRY95_21795 PF03466 LysR substrate binding domain NRY95_21800 PF03692 Putative zinc- or iron-chelating domain NRY95_21805 PF00561 alpha/beta hydrolase fold NRY95_21815 PF13784 Fic/DOC family N-terminal NRY95_21815 PF02661 Fic/DOC family NRY95_21820 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NRY95_21820 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NRY95_21845 PF01494 FAD binding domain NRY95_21850 PF00682 HMGL-like NRY95_21850 PF07836 DmpG-like communication domain NRY95_21855 PF01118 Semialdehyde dehydrogenase, NAD binding domain NRY95_21855 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation NRY95_21860 PF01557 Fumarylacetoacetate (FAA) hydrolase family NRY95_21865 PF00561 alpha/beta hydrolase fold NRY95_21870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NRY95_21875 PF05193 Peptidase M16 inactive domain NRY95_21875 PF00675 Insulinase (Peptidase family M16) NRY95_21890 PF00588 SpoU rRNA Methylase family NRY95_21910 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NRY95_21910 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NRY95_21915 PF02556 Preprotein translocase subunit SecB NRY95_21955 PF00108 Thiolase, N-terminal domain NRY95_21955 PF02803 Thiolase, C-terminal domain NRY95_21965 PF00080 Copper/zinc superoxide dismutase (SODC) NRY95_21970 PF00080 Copper/zinc superoxide dismutase (SODC) NRY95_21975 PF02954 Bacterial regulatory protein, Fis family NRY95_21975 PF00072 Response regulator receiver domain NRY95_21975 PF00158 Sigma-54 interaction domain NRY95_21980 PF00512 His Kinase A (phospho-acceptor) domain NRY95_21980 PF00989 PAS fold NRY95_21980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NRY95_21985 PF00909 Ammonium Transporter Family NRY95_21990 PF00543 Nitrogen regulatory protein P-II NRY95_21995 PF03951 Glutamine synthetase, beta-Grasp domain NRY95_21995 PF00120 Glutamine synthetase, catalytic domain NRY95_22000 PF02673 Bacitracin resistance protein BacA NRY95_22005 PF01161 Phosphatidylethanolamine-binding protein NRY95_22025 PF03061 Thioesterase superfamily NRY95_22030 PF13091 PLD-like domain NRY95_22045 PF13614 AAA domain NRY95_22050 PF17862 AAA+ lid domain NRY95_22050 PF01434 Peptidase family M41 NRY95_22050 PF00004 ATPase family associated with various cellular activities (AAA) NRY95_22090 PF07690 Major Facilitator Superfamily NRY95_22125 PF01381 Helix-turn-helix NRY95_22130 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB NRY95_22135 PF00271 Helicase conserved C-terminal domain NRY95_22135 PF09369 Domain of unknown function (DUF1998) NRY95_22135 PF00270 DEAD/DEAH box helicase NRY95_22160 PF03960 ArsC family NRY95_22170 PF01022 Bacterial regulatory protein, arsR family NRY95_22190 PF00310 Glutamine amidotransferases class-II NRY95_22190 PF01645 Conserved region in glutamate synthase NRY95_22190 PF01493 GXGXG motif NRY95_22190 PF04898 Glutamate synthase central domain NRY95_22195 PF07992 Pyridine nucleotide-disulphide oxidoreductase NRY95_22195 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NRY95_22210 PF04616 Glycosyl hydrolases family 43 NRY95_22230 PF00553 Cellulose binding domain NRY95_22230 PF03422 Carbohydrate binding module (family 6) NRY95_22230 PF00331 Glycosyl hydrolase family 10 NRY95_22235 PF02614 Glucuronate isomerase NRY95_22250 PF08450 SMP-30/Gluconolactonase/LRE-like region NRY95_22260 PF00593 TonB dependent receptor NRY95_22260 PF07715 TonB-dependent Receptor Plug Domain NRY95_22265 PF13350 Tyrosine phosphatase family NRY95_22275 PF04244 Deoxyribodipyrimidine photo-lyase-related protein NRY95_22290 PF01232 Mannitol dehydrogenase Rossmann domain NRY95_22290 PF08125 Mannitol dehydrogenase C-terminal domain NRY95_22295 PF07691 PA14 domain NRY95_22295 PF01915 Glycosyl hydrolase family 3 C-terminal domain NRY95_22295 PF00933 Glycosyl hydrolase family 3 N terminal domain NRY95_22295 PF14310 Fibronectin type III-like domain NRY95_22300 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain NRY95_22300 PF04616 Glycosyl hydrolases family 43 NRY95_22315 PF03648 Glycosyl hydrolase family 67 N-terminus NRY95_22315 PF07477 Glycosyl hydrolase family 67 C-terminus NRY95_22315 PF07488 Glycosyl hydrolase family 67 middle domain NRY95_22320 PF00356 Bacterial regulatory proteins, lacI family NRY95_22330 PF01171 PP-loop family NRY95_22335 PF04381 Putative exonuclease, RdgC NRY95_22345 PF02203 Tar ligand binding domain homologue NRY95_22345 PF00672 HAMP domain NRY95_22345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NRY95_22350 PF12697 Alpha/beta hydrolase family NRY95_22355 PF00762 Ferrochelatase NRY95_22365 PF02416 mttA/Hcf106 family NRY95_22370 PF02416 mttA/Hcf106 family NRY95_22375 PF00902 Sec-independent protein translocase protein (TatC) NRY95_22385 PF00117 Glutamine amidotransferase class-I NRY95_22385 PF00958 GMP synthase C terminal domain NRY95_22390 PF00437 Type II/IV secretion system protein NRY95_22390 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NRY95_22395 PF02091 Glycyl-tRNA synthetase alpha subunit NRY95_22400 PF05746 DALR anticodon binding domain NRY95_22400 PF02092 Glycyl-tRNA synthetase beta subunit NRY95_22405 PF00580 UvrD/REP helicase N-terminal domain NRY95_22405 PF13361 UvrD-like helicase C-terminal domain NRY95_22410 PF00265 Thymidine kinase NRY95_22420 PF04349 Periplasmic glucan biosynthesis protein, MdoG NRY95_22435 PF03793 PASTA domain NRY95_22435 PF00069 Protein kinase domain NRY95_22445 PF06827 Zinc finger found in FPG and IleRS NRY95_22445 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NRY95_22445 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NRY95_22460 PF00005 ABC transporter NRY95_22475 PF07969 Amidohydrolase family NRY95_22485 PF00857 Isochorismatase family NRY95_22500 PF01638 HxlR-like helix-turn-helix NRY95_22510 PF01926 50S ribosome-binding GTPase NRY95_22510 PF12631 MnmE helical domain NRY95_22510 PF10396 GTP-binding protein TrmE N-terminus NRY95_22515 PF03422 Carbohydrate binding module (family 6) NRY95_22515 PF00457 Glycosyl hydrolases family 11 NRY95_22515 PF01522 Polysaccharide deacetylase NRY95_22520 PF02096 60Kd inner membrane protein NRY95_22520 PF14849 YidC periplasmic domain NRY95_22525 PF00825 Ribonuclease P NRY95_22530 PF00468 Ribosomal protein L34