locus-tag	class	description
NRY95_00010	COG0592	DNA-directed DNA polymerase activity
NRY95_00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
NRY95_00020	COG0187	DNA topoisomerase II activity
NRY95_00025	COG1266	CAAX protease self-immunity
NRY95_00030	COG0501	Belongs to the peptidase M48B family
NRY95_00070	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NRY95_00105	COG1280	lysine exporter protein (LysE YggA)
NRY95_00125	COG4772	TonB-dependent receptor
NRY95_00135	COG3284	Transcriptional regulator
NRY95_00140	COG1012	belongs to the aldehyde dehydrogenase family
NRY95_00175	COG1304	FMN binding
NRY95_00180	COG2186	Transcriptional regulator
NRY95_00200	COG4585	Histidine kinase
NRY95_00205	COG2197	response regulator
NRY95_00335	COG4771	TonB-dependent receptor
NRY95_00340	COG1629	transport
NRY95_00340	COG4774	siderophore transport
NRY95_00380	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
NRY95_00395	COG3507	Belongs to the glycosyl hydrolase 43 family
NRY95_00400	COG1609	Transcriptional regulator
NRY95_00410	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_00420	COG2755	lipolytic protein G-D-S-L family
NRY95_00445	COG3186	Phenylalanine-4-hydroxylase
NRY95_00450	COG1522	sequence-specific DNA binding
NRY95_00470	COG1752	Esterase of the alpha-beta hydrolase superfamily
NRY95_00485	COG0671	phosphoesterase, PA-phosphatase related
NRY95_00500	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
NRY95_00530	COG1929	Belongs to the glycerate kinase type-1 family
NRY95_00540	COG2814	Major facilitator Superfamily
NRY95_00560	COG0531	amino acid
NRY95_00565	COG4566	intracellular signal transduction
NRY95_00570	COG4191	Histidine kinase
NRY95_00585	COG0625	glutathione transferase activity
NRY95_00590	COG1322	Protein conserved in bacteria
NRY95_00600	COG0386	Belongs to the glutathione peroxidase family
NRY95_00610	COG2853	Lipoprotein
NRY95_00625	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
NRY95_00630	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
NRY95_00635	COG1127	ABC transporter
NRY95_00670	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
NRY95_00675	COG1074	ATP-dependent DNA helicase activity
NRY95_00680	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
NRY95_00705	COG3800	Transcriptional regulator
NRY95_00705	COG1396	sequence-specific DNA binding
NRY95_00710	COG0537	adenosine 5'-monophosphoramidase activity
NRY95_00740	COG0537	adenosine 5'-monophosphoramidase activity
NRY95_00790	COG0477	Major facilitator Superfamily
NRY95_00795	COG0302	gtp cyclohydrolase
NRY95_00820	COG0730	response to heat
NRY95_00835	COG2951	lytic endotransglycosylase activity
NRY95_00855	COG3135	benzoate transporter
NRY95_00885	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
NRY95_00890	COG1803	Methylglyoxal synthase
NRY95_00895	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
NRY95_00900	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
NRY95_00910	COG2937	Belongs to the GPAT DAPAT family
NRY95_00925	COG1609	Transcriptional regulator
NRY95_00940	COG0284	orotidine-5'-phosphate decarboxylase activity
NRY95_00945	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
NRY95_01035	COG3132	Protein of unknown function, DUF480
NRY95_01050	COG0729	surface antigen
NRY95_01055	COG2911	Protein conserved in bacteria
NRY95_01070	COG3209	COG3209 Rhs family protein
NRY95_01085	COG2094	Belongs to the DNA glycosylase MPG family
NRY95_01090	COG3265	gluconokinase activity
NRY95_01095	COG2211	Major facilitator Superfamily
NRY95_01100	COG3459	Glycosyltransferase 36 associated
NRY95_01105	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
NRY95_01110	COG2205	protein histidine kinase activity
NRY95_01115	COG0457	Tetratricopeptide repeat
NRY95_01135	COG1971	Probably functions as a manganese efflux pump
NRY95_01165	COG0477	Major facilitator Superfamily
NRY95_01170	COG1011	Hydrolase
NRY95_01185	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NRY95_01210	COG2091	lysine biosynthetic process via aminoadipic acid
NRY95_01215	COG3540	Alkaline phosphatase
NRY95_01220	COG0357	Ribosomal RNA small subunit methyltransferase G
NRY95_01225	COG1192	Involved in chromosome partitioning
NRY95_01245	COG0463	Glycosyl transferase, family 2
NRY95_01300	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NRY95_01310	COG0210	DNA helicase
NRY95_01350	COG0589	response to stress
NRY95_01370	COG2323	membrane
NRY95_01380	COG0408	coproporphyrinogen oxidase activity
NRY95_01400	COG1271	oxidase subunit
NRY95_01405	COG1294	oxidase, subunit
NRY95_01440	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
NRY95_01455	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
NRY95_01480	COG0477	Major facilitator Superfamily
NRY95_01510	COG0463	Glycosyl transferase, family 2
NRY95_01520	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
NRY95_01525	COG3100	YcgL domain-containing protein
NRY95_01535	COG3387	PFAM Glycoside hydrolase 15-related
NRY95_01540	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
NRY95_01560	COG1278	Cold shock
NRY95_01585	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
NRY95_01590	COG1960	acyl-CoA dehydrogenase activity
NRY95_01600	COG3245	cytochrome
NRY95_01615	COG0523	cobalamin synthesis protein
NRY95_01620	COG0697	spore germination
NRY95_01630	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
NRY95_01635	COG1846	Transcriptional regulator
NRY95_01640	COG1764	response to oxidative stress
NRY95_01650	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
NRY95_01685	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
NRY95_01690	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
NRY95_01710	COG0583	DNA-binding transcription factor activity
NRY95_01715	COG2814	Major facilitator Superfamily
NRY95_01720	COG1404	Belongs to the peptidase S8 family
NRY95_01745	COG1902	pentaerythritol trinitrate reductase activity
NRY95_01750	COG2084	Dehydrogenase
NRY95_01765	COG0745	RESPONSE REGULATOR receiver
NRY95_01770	COG2205	protein histidine kinase activity
NRY95_01775	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NRY95_01780	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NRY95_01795	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
NRY95_01825	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
NRY95_01855	COG3228	Belongs to the MtfA family
NRY95_01865	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
NRY95_01865	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
NRY95_01870	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
NRY95_01900	COG3237	CsbD-like
NRY95_01910	COG0180	Tryptophanyl-tRNA synthetase
NRY95_01925	COG0697	spore germination
NRY95_01945	COG0577	efflux transmembrane transporter activity
NRY95_01950	COG1136	(ABC) transporter
NRY95_01955	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NRY95_01960	COG1131	(ABC) transporter
NRY95_01970	COG4585	Histidine kinase
NRY95_01975	COG2197	response regulator
NRY95_01980	COG4773	Receptor
NRY95_01995	COG0753	catalase activity
NRY95_02010	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
NRY95_02015	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
NRY95_02040	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
NRY95_02105	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
NRY95_02130	COG1199	ATP-dependent helicase activity
NRY95_02155	COG5001	Diguanylate cyclase
NRY95_02155	COG3706	GGDEF domain
NRY95_02155	COG2203	Gaf domain
NRY95_02155	COG4251	negative regulation of phosphorylation
NRY95_02195	COG0628	permease
NRY95_02280	COG0754	glutathionylspermidine amidase activity
NRY95_02290	COG0714	Associated with various cellular activities
NRY95_02325	COG1522	sequence-specific DNA binding
NRY95_02330	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
NRY95_02335	COG3420	alginic acid biosynthetic process
NRY95_02345	COG0710	3-dehydroquinate dehydratase activity
NRY95_02375	COG1024	Enoyl-CoA hydratase
NRY95_02420	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
NRY95_02430	COG3485	protocatechuate 3,4-dioxygenase
NRY95_02440	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
NRY95_02445	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
NRY95_02450	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
NRY95_02460	COG1414	Transcriptional regulator
NRY95_02480	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NRY95_02485	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NRY95_02495	COG3541	Predicted nucleotidyltransferase
NRY95_02510	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
NRY95_02530	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_02545	COG0156	8-amino-7-oxononanoate synthase activity
NRY95_02550	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
NRY95_02560	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
NRY95_02575	COG0582	viral genome integration into host DNA
NRY95_02590	COG4983	Phage plasmid primase, P4 family domain protein
NRY95_02620	COG0484	heat shock protein binding
NRY95_02630	COG2003	Belongs to the UPF0758 family
NRY95_02725	COG0606	chelatase, subunit chli
NRY95_02730	COG2960	long-chain fatty acid transporting porin activity
NRY95_02745	COG1166	arginine decarboxylase activity
NRY95_02750	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NRY95_02755	COG1819	glycosyl
NRY95_02760	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
NRY95_02760	COG2755	lipolytic protein G-D-S-L family
NRY95_02765	COG0583	DNA-binding transcription factor activity
NRY95_02785	COG4221	oxidoreductase activity
NRY95_02805	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
NRY95_02825	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
NRY95_02835	COG2814	Major facilitator Superfamily
NRY95_02850	COG0739	heme binding
NRY95_02855	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
NRY95_02885	COG1064	alcohol dehydrogenase
NRY95_02890	COG2234	aminopeptidase activity
NRY95_02900	COG4942	peptidase
NRY95_02905	COG0793	Belongs to the peptidase S41A family
NRY95_02940	COG0531	amino acid
NRY95_02950	COG1486	melibiose metabolic process
NRY95_02970	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
NRY95_02970	COG1565	acr, cog1565
NRY95_02985	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
NRY95_02990	COG1845	cytochrome c oxidase, subunit III
NRY95_03015	COG0109	protoheme IX farnesyltransferase activity
NRY95_03035	COG0358	DNA primase activity
NRY95_03040	COG1295	ribonuclease BN
NRY95_03045	COG1610	YqeY-like protein
NRY95_03060	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
NRY95_03065	COG2308	Evidence 4 Homologs of previously reported genes of
NRY95_03080	COG2133	pyrroloquinoline quinone binding
NRY95_03095	COG0531	amino acid
NRY95_03105	COG4948	Mandelate Racemase Muconate Lactonizing
NRY95_03115	COG4771	TonB-dependent receptor
NRY95_03155	COG3409	Peptidoglycan-binding domain 1 protein
NRY95_03155	COG3501	Rhs element vgr protein
NRY95_03160	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NRY95_03175	COG1538	Outer membrane efflux protein
NRY95_03180	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
NRY95_03235	COG5383	Protein conserved in bacteria
NRY95_03250	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NRY95_03260	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NRY95_03275	COG1652	LysM domain
NRY95_03315	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
NRY95_03320	COG3118	belongs to the thioredoxin family
NRY95_03330	COG2884	Cell division ATP-binding protein ftsE
NRY95_03335	COG2177	Part of the ABC transporter FtsEX involved in
NRY95_03340	COG2201	protein-glutamate methylesterase activity
NRY95_03345	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
NRY95_03350	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
NRY95_03355	COG2860	membrane
NRY95_03360	COG1252	NADH dehydrogenase
NRY95_03370	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
NRY95_03380	COG0534	Mate efflux family protein
NRY95_03385	COG0616	signal peptide processing
NRY95_03395	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_03425	COG0626	cystathionine gamma-synthase activity
NRY95_03460	COG0438	transferase activity, transferring glycosyl groups
NRY95_03470	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NRY95_03510	COG2086	electron transfer activity
NRY95_03540	COG0662	Cupin 2, conserved barrel domain protein
NRY95_03540	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
NRY95_03545	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
NRY95_03580	COG3218	ABC-type transport auxiliary lipoprotein component
NRY95_03580	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
NRY95_03585	COG1127	ABC transporter
NRY95_03590	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
NRY95_03605	COG0604	alcohol dehydrogenase
NRY95_03635	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
NRY95_03655	COG2197	response regulator
NRY95_03675	COG0442	prolyl-tRNA aminoacylation
NRY95_03685	COG1183	phosphatidylcholine synthase activity
NRY95_03710	COG0525	valine-tRNA ligase activity
NRY95_03720	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
NRY95_03745	COG4974	Belongs to the 'phage' integrase family
NRY95_03750	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
NRY95_03755	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
NRY95_03755	COG0047	phosphoribosylformylglycinamidine synthase activity
NRY95_03765	COG5295	Hep Hag repeat protein
NRY95_03770	COG1404	Belongs to the peptidase S8 family
NRY95_03775	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
NRY95_03780	COG1459	type II secretion system
NRY95_03785	COG2165	general secretion pathway protein
NRY95_03790	COG4970	Tfp pilus assembly protein FimT
NRY95_03795	COG2165	general secretion pathway protein
NRY95_03800	COG4795	General secretion pathway protein
NRY95_03805	COG3156	type II secretion system protein K
NRY95_03810	COG3166	PFAM Fimbrial assembly family protein
NRY95_03825	COG1450	Type ii and iii secretion system protein
NRY95_03835	COG2188	Transcriptional regulator
NRY95_03895	COG1215	transferase activity, transferring glycosyl groups
NRY95_03900	COG1215	transferase activity, transferring glycosyl groups
NRY95_03905	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
NRY95_03910	COG0457	Tetratricopeptide repeat
NRY95_03915	COG2205	protein histidine kinase activity
NRY95_03940	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
NRY95_03945	COG3791	Glutathione-dependent formaldehyde-activating
NRY95_03960	COG0741	lytic transglycosylase activity
NRY95_03975	COG3451	type IV secretory pathway VirB4
NRY95_03980	COG3704	protein secretion by the type IV secretion system
NRY95_03985	COG3504	Conjugal transfer protein
NRY95_04000	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
NRY95_04010	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NRY95_04020	COG0697	spore germination
NRY95_04030	COG1307	EDD domain protein, DegV family
NRY95_04055	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
NRY95_04070	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
NRY95_04100	COG1162	GTPase activity
NRY95_04110	COG2826	transposase and inactivated derivatives, IS30 family
NRY95_04130	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_04135	COG2851	Citrate transporter
NRY95_04150	COG0642	Histidine kinase
NRY95_04175	COG4191	Histidine kinase
NRY95_04185	COG1301	dicarboxylic acid transport
NRY95_04190	COG0280	phosphate acetyltransferase
NRY95_04190	COG0281	malic enzyme
NRY95_04245	COG1560	Kdo2-lipid A biosynthetic process
NRY95_04250	COG1519	Transferase
NRY95_04255	COG1538	Outer membrane efflux protein
NRY95_04260	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
NRY95_04285	COG0300	oxidoreductase activity
NRY95_04300	COG0642	Histidine kinase
NRY95_04305	COG3706	GGDEF domain
NRY95_04310	COG0473	3-isopropylmalate dehydrogenase activity
NRY95_04315	COG0066	3-isopropylmalate dehydratase activity
NRY95_04355	COG0405	Gamma-glutamyltransferase
NRY95_04360	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
NRY95_04365	COG0840	transmembrane signaling receptor activity
NRY95_04400	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
NRY95_04410	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
NRY95_04440	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
NRY95_04450	COG0671	phosphoesterase, PA-phosphatase related
NRY95_04460	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_04470	COG1629	transport
NRY95_04470	COG4771	TonB-dependent receptor
NRY95_04475	COG1940	carbohydrate kinase activity
NRY95_04480	COG0346	lactoylglutathione lyase activity
NRY95_04495	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
NRY95_04505	COG4206	TonB-dependent receptor
NRY95_04525	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
NRY95_04530	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
NRY95_04540	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
NRY95_04555	COG1773	rubredoxin
NRY95_04570	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
NRY95_04580	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
NRY95_04610	COG3079	Belongs to the UPF0149 family
NRY95_04615	COG0006	proline dipeptidase activity
NRY95_04620	COG0006	proline dipeptidase activity
NRY95_04635	COG0635	Involved in the biosynthesis of porphyrin-containing compound
NRY95_04645	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
NRY95_04650	COG0346	lactoylglutathione lyase activity
NRY95_04655	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
NRY95_04660	COG1561	YicC-like family, N-terminal region
NRY95_04665	COG0194	GDP metabolic process
NRY95_04670	COG1758	RNA polymerase activity
NRY95_04675	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
NRY95_04685	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
NRY95_04695	COG0254	rRNA binding
NRY95_04700	COG0372	Belongs to the citrate synthase family
NRY95_04715	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
NRY95_04745	COG0714	Associated with various cellular activities
NRY95_04775	COG1301	dicarboxylic acid transport
NRY95_04780	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
NRY95_04805	COG0739	heme binding
NRY95_04810	COG1376	ErfK ybiS ycfS ynhG family protein
NRY95_04855	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
NRY95_04860	COG4149	molybdate abc transporter
NRY95_04865	COG0725	ABC transporter, periplasmic molybdate-binding protein
NRY95_04880	COG0640	Transcriptional regulator
NRY95_04920	COG3047	cAMP biosynthetic process
NRY95_04925	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
NRY95_04945	COG0840	transmembrane signaling receptor activity
NRY95_04970	COG0469	pyruvate kinase activity
NRY95_04975	COG3588	fructose-bisphosphate aldolase
NRY95_04985	COG5002	protein histidine kinase activity
NRY95_05000	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
NRY95_05015	COG2252	PERMEase
NRY95_05030	COG1957	nucleoside hydrolase
NRY95_05065	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
NRY95_05085	COG2072	flavoprotein involved in K transport
NRY95_05090	COG2351	hydroxyisourate hydrolase activity
NRY95_05100	COG1529	Aldehyde oxidase and xanthine dehydrogenase
NRY95_05115	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
NRY95_05115	COG1648	precorrin-2 dehydrogenase activity
NRY95_05130	COG2205	protein histidine kinase activity
NRY95_05130	COG0784	Response regulator, receiver
NRY95_05130	COG2198	Histidine kinase
NRY95_05155	COG0175	sulfate reduction
NRY95_05160	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NRY95_05165	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
NRY95_05175	COG0529	Catalyzes the synthesis of activated sulfate
NRY95_05175	COG2895	sulfate adenylyltransferase (ATP) activity
NRY95_05185	COG0438	transferase activity, transferring glycosyl groups
NRY95_05200	COG1115	amino acid carrier protein
NRY95_05210	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NRY95_05225	COG1609	Transcriptional regulator
NRY95_05240	COG0179	Fumarylacetoacetate (FAA) hydrolase
NRY95_05255	COG0471	metal ion transport
NRY95_05255	COG3273	potassium ion transport
NRY95_05260	COG0220	tRNA (guanine-N7-)-methyltransferase activity
NRY95_05265	COG2022	thiamine diphosphate biosynthetic process
NRY95_05285	COG0582	viral genome integration into host DNA
NRY95_05305	COG5265	(ABC) transporter
NRY95_05315	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
NRY95_05320	COG0626	cystathionine gamma-synthase activity
NRY95_05335	COG1176	ABC-type spermidine putrescine transport system, permease component I
NRY95_05345	COG4336	lyase activity
NRY95_05350	COG0006	proline dipeptidase activity
NRY95_05355	COG1414	Transcriptional regulator
NRY95_05375	COG4771	TonB-dependent receptor
NRY95_05425	COG1396	sequence-specific DNA binding
NRY95_05705	COG0270	DNA (cytosine-5-)-methyltransferase activity
NRY95_05710	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
NRY95_05760	COG2894	cell division
NRY95_05770	COG0583	DNA-binding transcription factor activity
NRY95_05825	COG0783	Belongs to the Dps family
NRY95_05830	COG4191	Histidine kinase
NRY95_05835	COG4566	intracellular signal transduction
NRY95_05850	COG3511	phospholipase C
NRY95_05870	COG0745	RESPONSE REGULATOR receiver
NRY95_05885	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
NRY95_05935	COG4993	Dehydrogenase
NRY95_05940	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
NRY95_05940	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NRY95_05950	COG1262	PFAM Formylglycine-generating sulfatase enzyme
NRY95_05960	COG1174	glycine betaine transport
NRY95_05965	COG1125	glycine betaine transport
NRY95_05975	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NRY95_05980	COG0564	pseudouridine synthase activity
NRY95_06000	COG0840	transmembrane signaling receptor activity
NRY95_06005	COG4993	Dehydrogenase
NRY95_06015	COG3387	PFAM Glycoside hydrolase 15-related
NRY95_06025	COG4771	TonB-dependent receptor
NRY95_06035	COG0454	-acetyltransferase
NRY95_06060	COG0542	response to heat
NRY95_06085	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_06100	COG2223	nitrite transmembrane transporter activity
NRY95_06105	COG0019	diaminopimelate decarboxylase activity
NRY95_06110	COG4264	IucA IucC family
NRY95_06115	COG2814	Major facilitator Superfamily
NRY95_06120	COG4264	IucA IucC family
NRY95_06130	COG4772	TonB-dependent receptor
NRY95_06140	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NRY95_06140	COG4651	solute:proton antiporter activity
NRY95_06200	COG0488	(ABC) transporter
NRY95_06230	COG2755	lipolytic protein G-D-S-L family
NRY95_06230	COG0657	acetylesterase activity
NRY95_06280	COG0217	transcriptional regulatory protein
NRY95_06290	COG0632	four-way junction helicase activity
NRY95_06300	COG2255	four-way junction helicase activity
NRY95_06305	COG0824	Thioesterase
NRY95_06315	COG0848	biopolymer transport protein
NRY95_06325	COG0823	Involved in the tonB-independent uptake of proteins
NRY95_06330	COG2885	chlorophyll binding
NRY95_06340	COG0602	queuosine metabolic process
NRY95_06345	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
NRY95_06375	COG0514	ATP-dependent DNA helicase (RecQ)
NRY95_06385	COG0783	Belongs to the Dps family
NRY95_06390	COG1643	Atp-dependent helicase
NRY95_06425	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
NRY95_06435	COG1216	Glycosyl transferase, family 2
NRY95_06440	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
NRY95_06450	COG1199	ATP-dependent helicase activity
NRY95_06460	COG1397	ADP-ribosylglycohydrolase
NRY95_06475	COG0189	ligase activity
NRY95_06490	COG0835	chemotaxis
NRY95_06495	COG0840	transmembrane signaling receptor activity
NRY95_06500	COG2198	Histidine kinase
NRY95_06500	COG0784	Response regulator, receiver
NRY95_06500	COG0643	Histidine kinase
NRY95_06505	COG2201	protein-glutamate methylesterase activity
NRY95_06520	COG1446	asparaginase
NRY95_06550	COG0531	amino acid
NRY95_06555	COG2197	response regulator
NRY95_06560	COG2267	carboxylic ester hydrolase activity
NRY95_06565	COG4316	Uncharacterized protein conserved in bacteria (DUF2251)
NRY95_06595	COG0583	DNA-binding transcription factor activity
NRY95_06705	COG3537	Alpha-1,2-mannosidase
NRY95_06715	COG1472	Belongs to the glycosyl hydrolase 3 family
NRY95_06725	COG3525	Glycosyl hydrolase, family 20, catalytic domain
NRY95_06730	COG3858	chitin binding
NRY95_06730	COG1388	LysM domain
NRY95_06750	COG0837	glucose binding
NRY95_06760	COG1385	rRNA (uridine-N3-)-methyltransferase activity
NRY95_06770	COG0494	nUDIX hydrolase
NRY95_06775	COG1218	3'(2'),5'-bisphosphate nucleotidase
NRY95_06780	COG3956	TIGRFAM MazG family protein
NRY95_06795	COG0330	HflC and HflK could
NRY95_06805	COG0404	The glycine cleavage system catalyzes the degradation of glycine
NRY95_06825	COG0697	spore germination
NRY95_06865	COG4206	TonB-dependent receptor
NRY95_06875	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
NRY95_06880	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
NRY95_06885	COG0463	Glycosyl transferase, family 2
NRY95_06890	COG0517	IMP dehydrogenase activity
NRY95_06895	COG2982	Protein involved in outer membrane biogenesis
NRY95_06900	COG1272	protein, Hemolysin III
NRY95_06905	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
NRY95_06910	COG0739	heme binding
NRY95_06915	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
NRY95_06920	COG0626	cystathionine gamma-synthase activity
NRY95_06925	COG0527	aspartate kinase activity
NRY95_06925	COG0460	homoserine dehydrogenase
NRY95_06935	COG3706	GGDEF domain
NRY95_06940	COG1760	l-serine dehydratase
NRY95_06955	COG3038	cytochrome b561
NRY95_06975	COG0477	Major facilitator Superfamily
NRY95_06990	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
NRY95_07035	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
NRY95_07080	COG3706	GGDEF domain
NRY95_07120	COG0519	Catalyzes the synthesis of GMP from XMP
NRY95_07135	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
NRY95_07155	COG0840	transmembrane signaling receptor activity
NRY95_07165	COG1113	amino acid transport
NRY95_07185	COG2239	Acts as a magnesium transporter
NRY95_07190	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
NRY95_07195	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
NRY95_07205	COG1660	Displays ATPase and GTPase activities
NRY95_07215	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
NRY95_07235	COG1137	ATPase activity
NRY95_07250	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
NRY95_07290	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
NRY95_07315	COG0628	permease
NRY95_07325	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
NRY95_07330	COG3178	'Phosphotransferase
NRY95_07345	COG1555	photosystem II stabilization
NRY95_07365	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
NRY95_07370	COG1477	protein flavinylation
NRY95_07395	COG4774	siderophore transport
NRY95_07400	COG2146	nitrite reductase [NAD(P)H] activity
NRY95_07410	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
NRY95_07415	COG0719	Fe-S assembly protein
NRY95_07420	COG0396	ATPase activity
NRY95_07425	COG0719	Fe-S assembly protein
NRY95_07440	COG0693	protein deglycase activity
NRY95_07455	COG0739	heme binding
NRY95_07470	COG1764	response to oxidative stress
NRY95_07480	COG0384	phenazine biosynthesis protein PhzF
NRY95_07485	COG0527	aspartate kinase activity
NRY95_07505	COG0142	geranyltranstransferase activity
NRY95_07510	COG0629	single-stranded DNA binding
NRY95_07545	COG3104	oligopeptide transport
NRY95_07550	COG1297	OPT oligopeptide transporter protein
NRY95_07555	COG0823	Involved in the tonB-independent uptake of proteins
NRY95_07555	COG1506	peptidase
NRY95_07575	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
NRY95_07580	COG2879	small protein
NRY95_07585	COG1966	Carbon starvation protein
NRY95_07590	COG1741	Belongs to the pirin family
NRY95_07600	COG1741	Belongs to the pirin family
NRY95_07615	COG1515	deoxyribonuclease V activity
NRY95_07620	COG0588	phosphoglycerate mutase activity
NRY95_07635	COG2211	Major facilitator Superfamily
NRY95_07645	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NRY95_07660	COG5001	Diguanylate cyclase
NRY95_07660	COG3706	GGDEF domain
NRY95_07660	COG4251	negative regulation of phosphorylation
NRY95_07660	COG2203	Gaf domain
NRY95_07670	COG0840	transmembrane signaling receptor activity
NRY95_07675	COG0840	transmembrane signaling receptor activity
NRY95_07680	COG0840	transmembrane signaling receptor activity
NRY95_07685	COG2198	Histidine kinase
NRY95_07685	COG0643	Histidine kinase
NRY95_07695	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
NRY95_07710	COG3878	Protein conserved in bacteria
NRY95_07715	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
NRY95_07720	COG0745	RESPONSE REGULATOR receiver
NRY95_07725	COG2205	protein histidine kinase activity
NRY95_07730	COG4452	Inner membrane protein CreD
NRY95_07755	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
NRY95_07760	COG0735	belongs to the Fur family
NRY95_07775	COG1815	bacterial-type flagellum-dependent cell motility
NRY95_07780	COG1558	bacterial-type flagellum-dependent cell motility
NRY95_07785	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
NRY95_07800	COG4786	Flagellar basal body rod
NRY95_07835	COG2205	protein histidine kinase activity
NRY95_07860	COG1987	bacterial-type flagellum assembly
NRY95_07880	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
NRY95_07900	COG1360	Flagellar Motor Protein
NRY95_07905	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
NRY95_07910	COG1191	sigma factor activity
NRY95_07980	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NRY95_08005	COG3214	Protein conserved in bacteria
NRY95_08025	COG1529	Aldehyde oxidase and xanthine dehydrogenase
NRY95_08030	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
NRY95_08035	COG2080	2 iron, 2 sulfur cluster binding
NRY95_08045	COG1280	lysine exporter protein (LysE YggA)
NRY95_08085	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
NRY95_08145	COG1187	pseudouridine synthase activity
NRY95_08170	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
NRY95_08200	COG1132	(ABC) transporter
NRY95_08260	COG2771	luxR family
NRY95_08290	COG1981	membrane
NRY95_08300	COG0825	malonyl-CoA metabolic process
NRY95_08320	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NRY95_08340	COG0750	zinc metalloprotease
NRY95_08345	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
NRY95_08350	COG0575	Belongs to the CDS family
NRY95_08355	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
NRY95_08365	COG0528	UMP kinase activity
NRY95_08375	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
NRY95_08380	COG0052	Belongs to the universal ribosomal protein uS2 family
NRY95_08430	COG1393	Belongs to the ArsC family
NRY95_08435	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
NRY95_08440	COG0367	asparagine synthase
NRY95_08480	COG1566	PFAM secretion protein HlyD family protein
NRY95_08485	COG2814	Major facilitator Superfamily
NRY95_08530	COG0557	exoribonuclease II activity
NRY95_08540	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NRY95_08545	COG1538	Outer membrane efflux protein
NRY95_08550	COG1136	(ABC) transporter
NRY95_08550	COG0577	efflux transmembrane transporter activity
NRY95_08565	COG2205	protein histidine kinase activity
NRY95_08580	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
NRY95_08605	COG0704	Plays a role in the regulation of phosphate uptake
NRY95_08615	COG0581	inorganic phosphate transmembrane transporter activity
NRY95_08625	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
NRY95_08630	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
NRY95_08650	COG0659	secondary active sulfate transmembrane transporter activity
NRY95_08655	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
NRY95_08665	COG1024	Enoyl-CoA hydratase
NRY95_08710	COG0488	(ABC) transporter
NRY95_08725	COG2205	protein histidine kinase activity
NRY95_08725	COG0784	Response regulator, receiver
NRY95_08725	COG5002	protein histidine kinase activity
NRY95_08730	COG2733	membrane
NRY95_08760	COG0686	Belongs to the AlaDH PNT family
NRY95_08765	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
NRY95_08770	COG1917	Cupin 2, conserved barrel domain protein
NRY95_08770	COG1396	sequence-specific DNA binding
NRY95_08775	COG1012	belongs to the aldehyde dehydrogenase family
NRY95_08795	COG2223	nitrite transmembrane transporter activity
NRY95_08815	COG0477	Major facilitator Superfamily
NRY95_08825	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NRY95_08830	COG0174	glutamine synthetase
NRY95_08835	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
NRY95_08840	COG0174	glutamine synthetase
NRY95_08850	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
NRY95_08855	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
NRY95_08880	COG3842	ATPase activity
NRY95_08885	COG1176	ABC-type spermidine putrescine transport system, permease component I
NRY95_08890	COG1177	transmembrane transport
NRY95_08895	COG1012	belongs to the aldehyde dehydrogenase family
NRY95_08910	COG4535	Mg2 and Co2 transporter CorC
NRY95_08925	COG1702	phosphate starvation-inducible protein PhoH
NRY95_08940	COG0640	Transcriptional regulator
NRY95_08960	COG0741	lytic transglycosylase activity
NRY95_08965	COG0723	plastoquinol--plastocyanin reductase activity
NRY95_08970	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
NRY95_08980	COG2857	Cytochrome c1
NRY95_08985	COG0625	glutathione transferase activity
NRY95_08990	COG2969	positive regulation of protein catabolic process
NRY95_09030	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
NRY95_09035	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_09040	COG2095	MarC family integral membrane protein
NRY95_09055	COG1611	Belongs to the LOG family
NRY95_09060	COG3275	phosphorelay sensor kinase activity
NRY95_09105	COG0556	nucleotide-excision repair
NRY95_09140	COG2948	multi-organism process
NRY95_09200	COG0366	Alpha amylase catalytic
NRY95_09210	COG1082	Xylose isomerase domain protein TIM barrel
NRY95_09255	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
NRY95_09265	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
NRY95_09275	COG0072	phenylalanine-tRNA ligase activity
NRY95_09275	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NRY95_09320	COG0438	transferase activity, transferring glycosyl groups
NRY95_09325	COG0438	transferase activity, transferring glycosyl groups
NRY95_09335	COG0438	transferase activity, transferring glycosyl groups
NRY95_09360	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
NRY95_09370	COG1960	acyl-CoA dehydrogenase activity
NRY95_09390	COG1846	Transcriptional regulator
NRY95_09410	COG3040	lipid binding
NRY95_09425	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
NRY95_09430	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
NRY95_09430	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
NRY95_09435	COG0802	atpase or kinase
NRY95_09440	COG0860	N-Acetylmuramoyl-L-alanine amidase
NRY95_09445	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
NRY95_09470	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_09490	COG2081	HI0933 family
NRY95_09495	COG4681	YaeQ
NRY95_09500	COG0564	pseudouridine synthase activity
NRY95_09510	COG0625	glutathione transferase activity
NRY95_09555	COG0513	Belongs to the DEAD box helicase family
NRY95_09560	COG0488	(ABC) transporter
NRY95_09575	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
NRY95_09580	COG2207	Transcriptional regulator
NRY95_09595	COG2197	response regulator
NRY95_09605	COG1472	Belongs to the glycosyl hydrolase 3 family
NRY95_09640	COG1846	Transcriptional regulator
NRY95_09645	COG0339	signal peptide processing
NRY95_09650	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
NRY95_09655	COG0386	Belongs to the glutathione peroxidase family
NRY95_09685	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
NRY95_09735	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
NRY95_09740	COG0084	hydrolase, TatD family'
NRY95_09755	COG1960	acyl-CoA dehydrogenase activity
NRY95_09770	COG0305	Participates in initiation and elongation during chromosome replication
NRY95_09785	COG2204	response regulator
NRY95_09795	COG0415	Belongs to the DNA photolyase family
NRY95_09810	COG0583	DNA-binding transcription factor activity
NRY95_09825	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NRY95_09845	COG3706	GGDEF domain
NRY95_09850	COG0583	DNA-binding transcription factor activity
NRY95_09870	COG1404	Belongs to the peptidase S8 family
NRY95_09875	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
NRY95_09890	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NRY95_09895	COG0735	belongs to the Fur family
NRY95_09900	COG0497	DNA recombination
NRY95_09905	COG1420	regulation of RNA biosynthetic process
NRY95_09910	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
NRY95_09915	COG0443	Heat shock 70 kDa protein
NRY95_09920	COG0484	heat shock protein binding
NRY95_09925	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
NRY95_09930	COG1605	Chorismate mutase
NRY95_09930	COG0287	Prephenate dehydrogenase
NRY95_09940	COG1132	(ABC) transporter
NRY95_09990	COG2850	peptidyl-arginine hydroxylation
NRY95_09995	COG2885	chlorophyll binding
NRY95_10040	COG1131	(ABC) transporter
NRY95_10045	COG1725	Transcriptional regulator
NRY95_10055	COG0386	Belongs to the glutathione peroxidase family
NRY95_10070	COG2900	Belongs to the SlyX family
NRY95_10090	COG0646	methionine synthase
NRY95_10090	COG1410	methionine synthase
NRY95_10095	COG1410	methionine synthase
NRY95_10095	COG0646	methionine synthase
NRY95_10100	COG2226	methyltransferase
NRY95_10105	COG1960	acyl-CoA dehydrogenase activity
NRY95_10110	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NRY95_10115	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NRY95_10125	COG2902	Dehydrogenase
NRY95_10155	COG2925	Exonuclease
NRY95_10165	COG3844	kynureninase activity
NRY95_10175	COG0662	Cupin 2, conserved barrel domain protein
NRY95_10180	COG0288	reversible hydration of carbon dioxide
NRY95_10205	COG0316	Belongs to the HesB IscA family
NRY95_10210	COG2977	Belongs to the P-Pant transferase superfamily
NRY95_10235	COG3115	cell septum assembly
NRY95_10240	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
NRY95_10245	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
NRY95_10250	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
NRY95_10260	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
NRY95_10270	COG4993	Dehydrogenase
NRY95_10320	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
NRY95_10350	COG4221	oxidoreductase activity
NRY95_10385	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
NRY95_10390	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
NRY95_10395	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
NRY95_10400	COG0077	Prephenate dehydratase
NRY95_10400	COG1605	Chorismate mutase
NRY95_10425	COG0583	DNA-binding transcription factor activity
NRY95_10475	COG1530	ribonuclease E activity
NRY95_10485	COG3064	Membrane
NRY95_10490	COG0428	transporter
NRY95_10505	COG0316	Belongs to the HesB IscA family
NRY95_10505	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
NRY95_10525	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NRY95_10545	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NRY95_10550	COG2957	Belongs to the agmatine deiminase family
NRY95_10565	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
NRY95_10570	COG0539	negative regulation of cytoplasmic translation
NRY95_10575	COG0776	regulation of translation
NRY95_10585	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
NRY95_10590	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
NRY95_10600	COG1210	Utp--glucose-1-phosphate uridylyltransferase
NRY95_10605	COG0183	Belongs to the thiolase family
NRY95_10610	COG1024	Enoyl-CoA hydratase
NRY95_10610	COG1250	3-hydroxyacyl-CoA dehydrogenase
NRY95_10625	COG0820	rRNA (adenine-C2-)-methyltransferase activity
NRY95_10635	COG1426	Protein conserved in bacteria
NRY95_10645	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NRY95_10655	COG0746	molybdenum cofactor guanylyltransferase activity
NRY95_10665	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
NRY95_10670	COG0475	glutathione-regulated potassium exporter activity
NRY95_10670	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NRY95_10675	COG1073	alpha beta
NRY95_10685	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
NRY95_10700	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
NRY95_10710	COG1914	H( )-stimulated, divalent metal cation uptake system
NRY95_10730	COG0668	transmembrane transport
NRY95_10755	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_10760	COG1183	phosphatidylcholine synthase activity
NRY95_10770	COG3243	poly(R)-hydroxyalkanoic acid synthase
NRY95_10790	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NRY95_10790	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
NRY95_10800	COG0784	Response regulator, receiver
NRY95_10800	COG4191	Histidine kinase
NRY95_10805	COG2183	response to ionizing radiation
NRY95_10855	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NRY95_10870	COG0745	RESPONSE REGULATOR receiver
NRY95_10875	COG5002	protein histidine kinase activity
NRY95_10875	COG5000	phosphorelay sensor kinase activity
NRY95_10880	COG0577	efflux transmembrane transporter activity
NRY95_10885	COG1136	(ABC) transporter
NRY95_10885	COG0577	efflux transmembrane transporter activity
NRY95_11070	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
NRY95_11075	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
NRY95_11090	COG1024	Enoyl-CoA hydratase
NRY95_11100	COG1024	Enoyl-CoA hydratase
NRY95_11105	COG1024	Enoyl-CoA hydratase
NRY95_11145	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NRY95_11165	COG1304	FMN binding
NRY95_11170	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
NRY95_11180	COG1132	(ABC) transporter
NRY95_11200	COG0436	Aminotransferase
NRY95_11210	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
NRY95_11220	COG3483	tryptophan 2,3-dioxygenase activity
NRY95_11230	COG0438	transferase activity, transferring glycosyl groups
NRY95_11235	COG0297	glycogen (starch) synthase activity
NRY95_11250	COG0402	S-adenosylhomocysteine deaminase activity
NRY95_11255	COG4106	trans-aconitate 2-methyltransferase activity
NRY95_11275	COG2244	polysaccharide biosynthetic process
NRY95_11280	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
NRY95_11305	COG3038	cytochrome b561
NRY95_11325	COG1595	DNA-templated transcription, initiation
NRY95_11360	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
NRY95_11410	COG0038	chloride channel
NRY95_11415	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
NRY95_11430	COG1674	ftsk spoiiie
NRY95_11435	COG0492	ferredoxin-NADP+ reductase activity
NRY95_11455	COG0542	response to heat
NRY95_11475	COG0482	sulfurtransferase activity
NRY95_11480	COG2915	High frequency lysogenization protein hflD homolog
NRY95_11495	COG1116	anion transmembrane transporter activity
NRY95_11540	COG0784	Response regulator, receiver
NRY95_11540	COG0835	chemotaxis
NRY95_11550	COG1558	bacterial-type flagellum-dependent cell motility
NRY95_11555	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
NRY95_11575	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
NRY95_11595	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
NRY95_11605	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
NRY95_11625	COG2197	response regulator
NRY95_11635	COG2201	protein-glutamate methylesterase activity
NRY95_11655	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
NRY95_11660	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_11665	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_11675	COG4638	Rieske (2fe-2S)
NRY95_11705	COG1677	Flagellar hook-basal body complex protein FliE
NRY95_11755	COG3190	flagellar
NRY95_11765	COG1987	bacterial-type flagellum assembly
NRY95_11770	COG1684	flagellar biosynthetic protein fliR
NRY95_11820	COG0643	Histidine kinase
NRY95_11820	COG2198	Histidine kinase
NRY95_11820	COG0784	Response regulator, receiver
NRY95_11825	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
NRY95_11830	COG1360	Flagellar Motor Protein
NRY95_11835	COG1192	Involved in chromosome partitioning
NRY95_11850	COG0745	RESPONSE REGULATOR receiver
NRY95_11865	COG0840	transmembrane signaling receptor activity
NRY95_11875	COG0840	transmembrane signaling receptor activity
NRY95_11880	COG0840	transmembrane signaling receptor activity
NRY95_11885	COG0840	transmembrane signaling receptor activity
NRY95_11890	COG0840	transmembrane signaling receptor activity
NRY95_11895	COG0840	transmembrane signaling receptor activity
NRY95_11905	COG0835	chemotaxis
NRY95_11915	COG0840	transmembrane signaling receptor activity
NRY95_11920	COG0840	transmembrane signaling receptor activity
NRY95_11925	COG0840	transmembrane signaling receptor activity
NRY95_11985	COG0318	PFAM AMP-dependent synthetase and ligase
NRY95_11990	COG1024	Enoyl-CoA hydratase
NRY95_11995	COG0784	Response regulator, receiver
NRY95_11995	COG2198	Histidine kinase
NRY95_11995	COG2205	protein histidine kinase activity
NRY95_12015	COG3279	Response regulator of the LytR AlgR family
NRY95_12020	COG4676	Protein conserved in bacteria
NRY95_12035	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
NRY95_12040	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
NRY95_12050	COG0505	Belongs to the CarA family
NRY95_12060	COG2258	MOSC domain
NRY95_12065	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NRY95_12100	COG1024	Enoyl-CoA hydratase
NRY95_12120	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
NRY95_12140	COG0277	FAD linked oxidase domain protein
NRY95_12145	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
NRY95_12160	COG0531	amino acid
NRY95_12165	COG0531	amino acid
NRY95_12170	COG0235	Class ii aldolase
NRY95_12175	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
NRY95_12180	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
NRY95_12195	COG0140	phosphoribosyl-ATP diphosphatase activity
NRY95_12195	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
NRY95_12210	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
NRY95_12220	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
NRY95_12225	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
NRY95_12230	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
NRY95_12240	COG0124	histidyl-tRNA synthetase
NRY95_12245	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NRY95_12255	COG4659	FMN binding
NRY95_12275	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
NRY95_12285	COG0460	homoserine dehydrogenase
NRY95_12285	COG0527	aspartate kinase activity
NRY95_12295	COG1012	belongs to the aldehyde dehydrogenase family
NRY95_12315	COG0812	UDP-N-acetylmuramate dehydrogenase activity
NRY95_12330	COG0671	phosphoesterase, PA-phosphatase related
NRY95_12345	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
NRY95_12365	COG0166	Belongs to the GPI family
NRY95_12380	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
NRY95_12390	COG0617	tRNA 3'-terminal CCA addition
NRY95_12405	COG0860	N-Acetylmuramoyl-L-alanine amidase
NRY95_12415	COG0477	Major facilitator Superfamily
NRY95_12420	COG2115	Belongs to the xylose isomerase family
NRY95_12425	COG1070	Carbohydrate kinase
NRY95_12435	COG1501	Belongs to the glycosyl hydrolase 31 family
NRY95_12470	COG0800	Aldolase
NRY95_12485	COG3734	2-keto-3-deoxy-galactonokinase
NRY95_12490	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
NRY95_12500	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
NRY95_12510	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
NRY95_12515	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
NRY95_12530	COG0352	thiamine-phosphate diphosphorylase activity
NRY95_12530	COG0351	phosphomethylpyrimidine kinase
NRY95_12555	COG0583	DNA-binding transcription factor activity
NRY95_12560	COG1741	Belongs to the pirin family
NRY95_12645	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
NRY95_12650	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
NRY95_12660	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
NRY95_12665	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
NRY95_12670	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
NRY95_12675	COG1546	Belongs to the CinA family
NRY95_12680	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
NRY95_12695	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
NRY95_12700	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
NRY95_12705	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
NRY95_12710	COG1534	Rna-binding protein
NRY95_12725	COG1238	metal cluster binding
NRY95_12735	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
NRY95_12750	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
NRY95_12755	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
NRY95_12760	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
NRY95_12795	COG1120	ATPase activity
NRY95_12800	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NRY95_12805	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NRY95_12810	COG4592	Periplasmic binding protein
NRY95_12815	COG4774	siderophore transport
NRY95_12850	COG0306	phosphate transporter
NRY95_12860	COG1253	flavin adenine dinucleotide binding
NRY95_12875	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NRY95_12920	COG0069	glutamate synthase activity
NRY95_12925	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
NRY95_12940	COG1609	Transcriptional regulator
NRY95_12945	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
NRY95_12945	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
NRY95_12950	COG1105	Belongs to the carbohydrate kinase PfkB family
NRY95_12955	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
NRY95_12955	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
NRY95_12990	COG0577	efflux transmembrane transporter activity
NRY95_12990	COG1136	(ABC) transporter
NRY95_13030	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
NRY95_13040	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
NRY95_13045	COG4359	Dephosphorylates 2-hydroxy-3-keto-5-methylthiopentenyl- 1-phosphate (HK-MTPenyl-1-P) yielding 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene)
NRY95_13050	COG0583	DNA-binding transcription factor activity
NRY95_13055	COG3321	synthase
NRY95_13055	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_13055	COG0604	alcohol dehydrogenase
NRY95_13060	COG0583	DNA-binding transcription factor activity
NRY95_13070	COG0823	Involved in the tonB-independent uptake of proteins
NRY95_13070	COG1506	peptidase
NRY95_13070	COG4946	Tricorn protease homolog
NRY95_13080	COG0635	Involved in the biosynthesis of porphyrin-containing compound
NRY95_13095	COG0348	domain, Protein
NRY95_13130	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_13160	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NRY95_13170	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
NRY95_13185	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
NRY95_13205	COG1663	tetraacyldisaccharide 4'-kinase activity
NRY95_13210	COG1132	(ABC) transporter
NRY95_13215	COG0848	biopolymer transport protein
NRY95_13220	COG0811	peptide transport
NRY95_13240	COG4591	ABC-type transport system involved in lipoprotein release permease component
NRY95_13265	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
NRY95_13270	COG2009	succinate dehydrogenase
NRY95_13285	COG3842	ATPase activity
NRY95_13290	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
NRY95_13305	COG0129	dihydroxy-acid dehydratase activity
NRY95_13310	COG0800	Aldolase
NRY95_13320	COG0395	ABC-type sugar transport system, permease component
NRY95_13360	COG2350	Protein conserved in bacteria
NRY95_13365	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
NRY95_13370	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
NRY95_13375	COG1187	pseudouridine synthase activity
NRY95_13400	COG0436	Aminotransferase
NRY95_13405	COG4133	protoheme IX ABC transporter activity
NRY95_13450	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
NRY95_13455	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
NRY95_13460	COG4988	ABC transporter
NRY95_13470	COG1294	oxidase, subunit
NRY95_13500	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
NRY95_13515	COG0165	Argininosuccinate lyase
NRY95_13520	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
NRY95_13530	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
NRY95_13535	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
NRY95_13540	COG0137	argininosuccinate synthase activity
NRY95_13545	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
NRY95_13560	COG2166	iron-sulfur cluster assembly
NRY95_13605	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NRY95_13640	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
NRY95_13660	COG4303	Ethanolamine ammonia lyase large subunit
NRY95_13665	COG4302	ethanolamine ammonia-lyase activity
NRY95_13670	COG4677	pectinesterase activity
NRY95_13690	COG0402	S-adenosylhomocysteine deaminase activity
NRY95_13695	COG3548	integral membrane protein
NRY95_13700	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
NRY95_13705	COG1509	lysine 2,3-aminomutase activity
NRY95_13715	COG5001	Diguanylate cyclase
NRY95_13715	COG4251	negative regulation of phosphorylation
NRY95_13715	COG3706	GGDEF domain
NRY95_13715	COG2203	Gaf domain
NRY95_13745	COG1862	Preprotein translocase
NRY95_13755	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
NRY95_13765	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
NRY95_13795	COG4774	siderophore transport
NRY95_13815	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
NRY95_13830	COG3291	Pkd domain containing protein
NRY95_13835	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NRY95_13840	COG0405	Gamma-glutamyltransferase
NRY95_13845	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
NRY95_13860	COG0742	ribosomal rna small subunit methyltransferase
NRY95_13865	COG0326	Molecular chaperone. Has ATPase activity
NRY95_13880	COG3345	alpha-galactosidase
NRY95_13900	COG3507	Belongs to the glycosyl hydrolase 43 family
NRY95_13910	COG4206	TonB-dependent receptor
NRY95_13935	COG0531	amino acid
NRY95_13950	COG0006	proline dipeptidase activity
NRY95_13960	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
NRY95_13975	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NRY95_13980	COG3938	Belongs to the proline racemase family
NRY95_13990	COG0552	protein localization to endoplasmic reticulum
NRY95_13995	COG1194	a g-specific adenine glycosylase
NRY95_14050	COG0835	chemotaxis
NRY95_14055	COG0840	transmembrane signaling receptor activity
NRY95_14060	COG1201	RNA secondary structure unwinding
NRY95_14075	COG5001	Diguanylate cyclase
NRY95_14075	COG3300	MHYT domain
NRY95_14080	COG1185	polyribonucleotide nucleotidyltransferase activity
NRY95_14090	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
NRY95_14105	COG0195	Participates in both transcription termination and antitermination
NRY95_14120	COG1007	ATP synthesis coupled electron transport
NRY95_14155	COG1034	ATP synthesis coupled electron transport
NRY95_14160	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
NRY95_14165	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
NRY95_14170	COG0649	NAD binding
NRY95_14175	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NRY95_14185	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NRY95_14200	COG0149	triose-phosphate isomerase activity
NRY95_14205	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_14220	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
NRY95_14250	COG0101	tRNA pseudouridine synthase activity
NRY95_14260	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
NRY95_14275	COG2890	protein-(glutamine-N5) methyltransferase activity
NRY95_14285	COG0688	phosphatidylethanolamine metabolic process
NRY95_14295	COG0741	lytic transglycosylase activity
NRY95_14300	COG0433	COG0433 Predicted ATPase
NRY95_14305	COG0494	nUDIX hydrolase
NRY95_14320	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
NRY95_14330	COG3620	sequence-specific DNA binding
NRY95_14335	COG2336	PFAM SpoVT AbrB
NRY95_14345	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
NRY95_14350	COG1404	Belongs to the peptidase S8 family
NRY95_14365	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
NRY95_14395	COG0717	Belongs to the dCTP deaminase family
NRY95_14400	COG0489	protein tyrosine kinase activity
NRY95_14405	COG4771	TonB-dependent receptor
NRY95_14410	COG0457	Tetratricopeptide repeat
NRY95_14425	COG3590	peptidase
NRY95_14450	COG0705	Rhomboid family
NRY95_14470	COG2311	Membrane
NRY95_14475	COG1047	Peptidyl-prolyl cis-trans
NRY95_14480	COG0791	NLP P60 protein
NRY95_14485	COG0791	NLP P60 protein
NRY95_14490	COG1607	acyl-coa hydrolase
NRY95_14495	COG2226	methyltransferase
NRY95_14500	COG1301	dicarboxylic acid transport
NRY95_14505	COG1785	Belongs to the alkaline phosphatase family
NRY95_14515	COG0037	tRNA processing
NRY95_14520	COG1722	exodeoxyribonuclease VII activity
NRY95_14525	COG0142	geranyltranstransferase activity
NRY95_14530	COG4104	PAAR repeat-containing protein
NRY95_14555	COG0312	modulator of DNA gyrase
NRY95_14565	COG0312	modulator of DNA gyrase
NRY95_14585	COG2968	Membrane
NRY95_14600	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
NRY95_14615	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
NRY95_14630	COG0495	leucyl-tRNA aminoacylation
NRY95_14640	COG3118	belongs to the thioredoxin family
NRY95_14650	COG5001	Diguanylate cyclase
NRY95_14650	COG4251	negative regulation of phosphorylation
NRY95_14650	COG3706	GGDEF domain
NRY95_14650	COG2203	Gaf domain
NRY95_14665	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
NRY95_14675	COG2040	homocysteine
NRY95_14685	COG0346	lactoylglutathione lyase activity
NRY95_14695	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NRY95_14695	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NRY95_14705	COG2878	Part of a membrane complex involved in electron transport
NRY95_14720	COG1595	DNA-templated transcription, initiation
NRY95_14745	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
NRY95_14765	COG0251	oxidation-reduction process
NRY95_14775	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
NRY95_14775	COG0392	lysyltransferase activity
NRY95_14810	COG0840	transmembrane signaling receptor activity
NRY95_14820	COG2814	Major facilitator Superfamily
NRY95_14825	COG1902	pentaerythritol trinitrate reductase activity
NRY95_14830	COG0583	DNA-binding transcription factor activity
NRY95_14845	COG2824	Alkylphosphonate utilization operon protein PhnA
NRY95_14855	COG1047	Peptidyl-prolyl cis-trans
NRY95_14860	COG1077	Cell shape determining protein MreB Mrl
NRY95_14895	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
NRY95_14900	COG0583	DNA-binding transcription factor activity
NRY95_14905	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_14915	COG1451	nucleotide metabolic process
NRY95_14935	COG2205	protein histidine kinase activity
NRY95_14980	COG1703	isobutyryl-CoA mutase activity
NRY95_14980	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
NRY95_14980	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
NRY95_15000	COG0183	Belongs to the thiolase family
NRY95_15010	COG0443	Heat shock 70 kDa protein
NRY95_15040	COG1960	acyl-CoA dehydrogenase activity
NRY95_15045	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
NRY95_15045	COG1793	dna ligase
NRY95_15050	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
NRY95_15050	COG1793	dna ligase
NRY95_15055	COG1201	RNA secondary structure unwinding
NRY95_15065	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NRY95_15070	COG1278	Cold shock
NRY95_15075	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
NRY95_15080	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
NRY95_15085	COG1472	Belongs to the glycosyl hydrolase 3 family
NRY95_15130	COG2954	triphosphatase activity
NRY95_15140	COG0745	RESPONSE REGULATOR receiver
NRY95_15145	COG1381	Involved in DNA repair and RecF pathway recombination
NRY95_15150	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
NRY95_15165	COG0681	Belongs to the peptidase S26 family
NRY95_15170	COG0481	GTPase activity
NRY95_15175	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
NRY95_15190	COG1250	3-hydroxyacyl-CoA dehydrogenase
NRY95_15190	COG1024	Enoyl-CoA hydratase
NRY95_15200	COG2855	membrane
NRY95_15215	COG3867	Arabinogalactan endo-beta-1,4-galactanase
NRY95_15220	COG3250	beta-galactosidase activity
NRY95_15230	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
NRY95_15250	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
NRY95_15260	COG0534	Mate efflux family protein
NRY95_15265	COG0335	large ribosomal subunit rRNA binding
NRY95_15270	COG0336	Belongs to the RNA methyltransferase TrmD family
NRY95_15275	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
NRY95_15290	COG2070	2-Nitropropane dioxygenase
NRY95_15295	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
NRY95_15320	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
NRY95_15345	COG0475	glutathione-regulated potassium exporter activity
NRY95_15350	COG0583	DNA-binding transcription factor activity
NRY95_15365	COG0625	glutathione transferase activity
NRY95_15370	COG1082	Xylose isomerase domain protein TIM barrel
NRY95_15380	COG1172	Belongs to the binding-protein-dependent transport system permease family
NRY95_15385	COG1172	Belongs to the binding-protein-dependent transport system permease family
NRY95_15390	COG1129	ABC transporter
NRY95_15395	COG1879	ABC-type sugar transport system periplasmic component
NRY95_15400	COG1012	belongs to the aldehyde dehydrogenase family
NRY95_15415	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_15420	COG0129	dihydroxy-acid dehydratase activity
NRY95_15430	COG3152	Membrane
NRY95_15455	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
NRY95_15460	COG1845	cytochrome c oxidase, subunit III
NRY95_15465	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
NRY95_15490	COG4771	TonB-dependent receptor
NRY95_15500	COG1228	amidohydrolase
NRY95_15515	COG0251	oxidation-reduction process
NRY95_15560	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
NRY95_15575	COG0196	riboflavin kinase activity
NRY95_15600	COG0728	peptidoglycan biosynthetic process
NRY95_15610	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
NRY95_15615	COG0211	Belongs to the bacterial ribosomal protein bL27 family
NRY95_15620	COG0261	This protein binds to 23S rRNA in the presence of protein L20
NRY95_15625	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
NRY95_15630	COG0824	Thioesterase
NRY95_15640	COG1024	Enoyl-CoA hydratase
NRY95_15640	COG1250	3-hydroxyacyl-CoA dehydrogenase
NRY95_15645	COG1946	Acyl-CoA thioesterase
NRY95_15655	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
NRY95_15675	COG0840	transmembrane signaling receptor activity
NRY95_15695	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
NRY95_15715	COG1073	alpha beta
NRY95_15740	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
NRY95_15770	COG4585	Histidine kinase
NRY95_15780	COG0850	regulation of cytokinetic process
NRY95_15785	COG2894	cell division
NRY95_15790	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
NRY95_15800	COG2205	protein histidine kinase activity
NRY95_15805	COG0745	RESPONSE REGULATOR receiver
NRY95_15815	COG2194	sulfuric ester hydrolase activity
NRY95_15850	COG2814	Major facilitator Superfamily
NRY95_15855	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
NRY95_15855	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
NRY95_15865	COG3706	GGDEF domain
NRY95_15865	COG4251	negative regulation of phosphorylation
NRY95_15865	COG5001	Diguanylate cyclase
NRY95_15865	COG2203	Gaf domain
NRY95_15870	COG0753	catalase activity
NRY95_15900	COG1063	alcohol dehydrogenase
NRY95_15910	COG3459	Glycosyltransferase 36 associated
NRY95_15970	COG0492	ferredoxin-NADP+ reductase activity
NRY95_16000	COG3275	phosphorelay sensor kinase activity
NRY95_16115	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
NRY95_16125	COG0330	HflC and HflK could
NRY95_16130	COG0330	HflC and HflK could
NRY95_16135	COG0604	alcohol dehydrogenase
NRY95_16155	COG0678	peroxiredoxin activity
NRY95_16165	COG4953	penicillin-binding protein 1C
NRY95_16180	COG2223	nitrite transmembrane transporter activity
NRY95_16185	COG2205	protein histidine kinase activity
NRY95_16185	COG0784	Response regulator, receiver
NRY95_16200	COG1136	(ABC) transporter
NRY95_16200	COG0577	efflux transmembrane transporter activity
NRY95_16220	COG2373	Large extracellular alpha-helical protein
NRY95_16250	COG3609	addiction module antidote protein, CC2985 family
NRY95_16275	COG0372	Belongs to the citrate synthase family
NRY95_16280	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
NRY95_16295	COG0587	DNA-directed DNA polymerase activity
NRY95_16310	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
NRY95_16345	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
NRY95_16350	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
NRY95_16355	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
NRY95_16370	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_16375	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
NRY95_16380	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
NRY95_16385	COG0333	Belongs to the bacterial ribosomal protein bL32 family
NRY95_16390	COG1399	metal-binding, possibly nucleic acid-binding protein
NRY95_16415	COG0714	Associated with various cellular activities
NRY95_16435	COG0537	adenosine 5'-monophosphoramidase activity
NRY95_16465	COG0314	molybdopterin synthase activity
NRY95_16470	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
NRY95_16475	COG0315	cyclic pyranopterin monophosphate synthase activity
NRY95_16485	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
NRY95_16490	COG1234	tRNA 3'-trailer cleavage
NRY95_16500	COG0859	PFAM glycosyl transferase family 9
NRY95_16520	COG0631	protein serine/threonine phosphatase activity
NRY95_16530	COG0328	RNA-DNA hybrid ribonuclease activity
NRY95_16540	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NRY95_16545	COG3942	CHAP domain
NRY95_16545	COG1388	LysM domain
NRY95_16580	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
NRY95_16590	COG0544	peptidyl-prolyl cis-trans isomerase activity
NRY95_16635	COG0473	3-isopropylmalate dehydrogenase activity
NRY95_16650	COG4783	chaperone-mediated protein folding
NRY95_16665	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
NRY95_16670	COG0248	Ppx GppA phosphatase
NRY95_16675	COG0438	transferase activity, transferring glycosyl groups
NRY95_16685	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NRY95_16695	COG3291	Pkd domain containing protein
NRY95_16700	COG2833	Protein of unknown function (DUF455)
NRY95_16720	COG0285	dihydrofolate synthase activity
NRY95_16725	COG0588	phosphoglycerate mutase activity
NRY95_16745	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
NRY95_16750	COG4208	sulfate ABC transporter
NRY95_16755	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
NRY95_16760	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
NRY95_16770	COG1187	pseudouridine synthase activity
NRY95_16780	COG2885	chlorophyll binding
NRY95_16785	COG0583	DNA-binding transcription factor activity
NRY95_16790	COG2814	Major facilitator Superfamily
NRY95_16800	COG0667	Aldo Keto reductase
NRY95_16810	COG1902	pentaerythritol trinitrate reductase activity
NRY95_16810	COG0446	pyridine nucleotide-disulphide oxidoreductase
NRY95_16830	COG0584	glycerophosphoryl diester phosphodiesterase
NRY95_16845	COG0625	glutathione transferase activity
NRY95_16870	COG0039	L-malate dehydrogenase activity
NRY95_16880	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
NRY95_16885	COG1217	gtp-binding protein TYPA
NRY95_16905	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
NRY95_16915	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
NRY95_16920	COG0203	ribosomal protein L17
NRY95_16930	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
NRY95_16945	COG0201	protein transport
NRY95_16955	COG1841	ribosomal large subunit assembly
NRY95_16985	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
NRY95_16990	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
NRY95_17000	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
NRY95_17005	COG0255	Belongs to the universal ribosomal protein uL29 family
NRY95_17030	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
NRY95_17035	COG0089	rRNA binding
NRY95_17040	COG0088	Forms part of the polypeptide exit tunnel
NRY95_17050	COG0051	transcription antitermination factor activity, RNA binding
NRY95_17055	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
NRY95_17060	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
NRY95_17075	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
NRY95_17085	COG0222	ribosome binding
NRY95_17100	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
NRY95_17105	COG0250	Participates in transcription elongation, termination and antitermination
NRY95_17120	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
NRY95_17140	COG0012	GTP binding
NRY95_17145	COG0193	aminoacyl-tRNA hydrolase activity
NRY95_17155	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
NRY95_17165	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
NRY95_17180	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
NRY95_17185	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
NRY95_17200	COG0521	Mo-molybdopterin cofactor biosynthetic process
NRY95_17225	COG1295	ribonuclease BN
NRY95_17245	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
NRY95_17250	COG1404	Belongs to the peptidase S8 family
NRY95_17255	COG1404	Belongs to the peptidase S8 family
NRY95_17260	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
NRY95_17325	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
NRY95_17325	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
NRY95_17365	COG3634	alkyl hydroperoxide reductase activity
NRY95_17370	COG0583	DNA-binding transcription factor activity
NRY95_17380	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
NRY95_17385	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
NRY95_17405	COG2197	response regulator
NRY95_17430	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
NRY95_17440	COG0697	spore germination
NRY95_17485	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NRY95_17490	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NRY95_17530	COG2096	Adenosyltransferase
NRY95_17545	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NRY95_17550	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
NRY95_17555	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
NRY95_17560	COG2967	ApaG domain
NRY95_17565	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
NRY95_17595	COG1704	LemA family
NRY95_17600	COG0861	Integral membrane protein TerC family
NRY95_17605	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
NRY95_17620	COG2205	protein histidine kinase activity
NRY95_17640	COG0642	Histidine kinase
NRY95_17655	COG4181	ATPase activity
NRY95_17660	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
NRY95_17665	COG2175	clavaminate synthase activity
NRY95_17675	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
NRY95_17680	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NRY95_17700	COG4771	TonB-dependent receptor
NRY95_17710	COG0667	Aldo Keto reductase
NRY95_17715	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
NRY95_17730	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
NRY95_17770	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
NRY95_17835	COG0366	Alpha amylase catalytic
NRY95_17840	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
NRY95_17850	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_17855	COG1733	regulation of RNA biosynthetic process
NRY95_17870	COG0494	nUDIX hydrolase
NRY95_17885	COG0739	heme binding
NRY95_17895	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
NRY95_17900	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
NRY95_17910	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
NRY95_17915	COG1181	Belongs to the D-alanine--D-alanine ligase family
NRY95_17925	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
NRY95_17940	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
NRY95_17955	COG3116	cell division
NRY95_17965	COG2001	Belongs to the MraZ family
NRY95_18000	COG1988	membrane-bound metal-dependent
NRY95_18005	COG0277	FAD linked oxidase domain protein
NRY95_18020	COG0745	RESPONSE REGULATOR receiver
NRY95_18025	COG2205	protein histidine kinase activity
NRY95_18035	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
NRY95_18040	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
NRY95_18065	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
NRY95_18070	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
NRY95_18075	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
NRY95_18090	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
NRY95_18090	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
NRY95_18100	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
NRY95_18120	COG0477	Major facilitator Superfamily
NRY95_18125	COG0488	(ABC) transporter
NRY95_18130	COG0242	peptide deformylase activity
NRY95_18140	COG1960	acyl-CoA dehydrogenase activity
NRY95_18160	COG1696	Membrane protein involved in D-alanine export
NRY95_18180	COG1215	transferase activity, transferring glycosyl groups
NRY95_18190	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
NRY95_18215	COG2207	Transcriptional regulator
NRY95_18240	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
NRY95_18265	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
NRY95_18270	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
NRY95_18275	COG1609	Transcriptional regulator
NRY95_18280	COG0738	Major facilitator superfamily
NRY95_18285	COG2188	Transcriptional regulator
NRY95_18300	COG3250	beta-galactosidase activity
NRY95_18320	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_18325	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
NRY95_18335	COG4191	Histidine kinase
NRY95_18340	COG0784	Response regulator, receiver
NRY95_18345	COG2205	protein histidine kinase activity
NRY95_18345	COG2202	Pas domain
NRY95_18355	COG2823	Periplasmic or secreted lipoprotein
NRY95_18360	COG0673	inositol 2-dehydrogenase activity
NRY95_18365	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
NRY95_18375	COG1090	epimerase
NRY95_18405	COG1051	belongs to the nudix hydrolase family
NRY95_18405	COG1056	cytidyltransferase-related domain
NRY95_18435	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
NRY95_18440	COG0321	lipoyl(octanoyl) transferase activity
NRY95_18455	COG1686	Belongs to the peptidase S11 family
NRY95_18465	COG2951	lytic endotransglycosylase activity
NRY95_18470	COG1012	belongs to the aldehyde dehydrogenase family
NRY95_18485	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
NRY95_18500	COG0772	Belongs to the SEDS family
NRY95_18505	COG0768	penicillin binding
NRY95_18515	COG1792	Involved in formation and maintenance of cell shape
NRY95_18520	COG1077	Cell shape determining protein MreB Mrl
NRY95_18525	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NRY95_18530	COG3284	Transcriptional regulator
NRY95_18540	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
NRY95_18550	COG2010	Cytochrome c
NRY95_18575	COG0508	dehydrogenase complex catalyzes the overall conversion of
NRY95_18575	COG0596	Alpha beta hydrolase
NRY95_18580	COG0308	aminopeptidase N
NRY95_18585	COG2226	methyltransferase
NRY95_18595	COG0355	proton-transporting ATP synthase activity, rotational mechanism
NRY95_18605	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
NRY95_18630	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
NRY95_18640	COG2832	Protein of unknown function (DUF454)
NRY95_18655	COG0436	Aminotransferase
NRY95_18670	COG1505	serine-type exopeptidase activity
NRY95_18685	COG1733	regulation of RNA biosynthetic process
NRY95_18700	COG0181	hydroxymethylbilane synthase activity
NRY95_18775	COG1648	precorrin-2 dehydrogenase activity
NRY95_18775	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
NRY95_18795	COG2204	response regulator
NRY95_18800	COG4191	Histidine kinase
NRY95_18805	COG0028	Belongs to the TPP enzyme family
NRY95_18810	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
NRY95_18820	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NRY95_18835	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
NRY95_18845	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_18850	COG3685	Protein conserved in bacteria
NRY95_18855	COG3685	Protein conserved in bacteria
NRY95_18865	COG0840	transmembrane signaling receptor activity
NRY95_18880	COG1309	transcriptional regulator
NRY95_18885	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
NRY95_18885	COG2124	cytochrome p450
NRY95_18930	COG1609	Transcriptional regulator
NRY95_18935	COG3537	Alpha-1,2-mannosidase
NRY95_18955	COG3706	GGDEF domain
NRY95_18955	COG2203	Gaf domain
NRY95_18955	COG5001	Diguanylate cyclase
NRY95_18955	COG4251	negative regulation of phosphorylation
NRY95_18985	COG0312	modulator of DNA gyrase
NRY95_19005	COG1136	(ABC) transporter
NRY95_19020	COG4555	ABC transporter
NRY95_19035	COG1725	Transcriptional regulator
NRY95_19085	COG0366	Alpha amylase catalytic
NRY95_19090	COG0366	Alpha amylase catalytic
NRY95_19095	COG3537	Alpha-1,2-mannosidase
NRY95_19100	COG1609	Transcriptional regulator
NRY95_19115	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
NRY95_19120	COG1490	D-aminoacyl-tRNA deacylase activity
NRY95_19135	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
NRY95_19170	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
NRY95_19175	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
NRY95_19175	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
NRY95_19185	COG0242	peptide deformylase activity
NRY95_19190	COG1652	LysM domain
NRY95_19195	COG0758	DNA mediated transformation
NRY95_19210	COG1714	RDD family
NRY95_19215	COG1754	DNA topoisomerase type I activity
NRY95_19215	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
NRY95_19220	COG0009	L-threonylcarbamoyladenylate synthase
NRY95_19235	COG0625	glutathione transferase activity
NRY95_19250	COG0720	synthase
NRY95_19260	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
NRY95_19265	COG1956	GAF domain-containing protein
NRY95_19275	COG4206	TonB-dependent receptor
NRY95_19280	COG0583	DNA-binding transcription factor activity
NRY95_19295	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NRY95_19300	COG0546	phosphoglycolate phosphatase activity
NRY95_19310	COG2910	NAD(P)H-binding
NRY95_19320	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
NRY95_19325	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
NRY95_19335	COG0339	signal peptide processing
NRY95_19340	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
NRY95_19350	COG2217	Heavy metal translocating P-type atpase
NRY95_19365	COG2132	Multicopper oxidase
NRY95_19380	COG0318	PFAM AMP-dependent synthetase and ligase
NRY95_19385	COG1012	belongs to the aldehyde dehydrogenase family
NRY95_19400	COG1960	acyl-CoA dehydrogenase activity
NRY95_19405	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_19410	COG1024	Enoyl-CoA hydratase
NRY95_19415	COG1024	Enoyl-CoA hydratase
NRY95_19415	COG1250	3-hydroxyacyl-CoA dehydrogenase
NRY95_19420	COG0183	Belongs to the thiolase family
NRY95_19445	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
NRY95_19455	COG1136	(ABC) transporter
NRY95_19465	COG0577	efflux transmembrane transporter activity
NRY95_19475	COG1136	(ABC) transporter
NRY95_19475	COG0577	efflux transmembrane transporter activity
NRY95_19480	COG0577	efflux transmembrane transporter activity
NRY95_19480	COG1136	(ABC) transporter
NRY95_19485	COG0577	efflux transmembrane transporter activity
NRY95_19500	COG4191	Histidine kinase
NRY95_19510	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
NRY95_19525	COG0355	proton-transporting ATP synthase activity, rotational mechanism
NRY95_19540	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
NRY95_19550	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
NRY95_19560	COG0356	it plays a direct role in the translocation of protons across the membrane
NRY95_19575	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NRY95_19580	COG0508	dehydrogenase complex catalyzes the overall conversion of
NRY95_19615	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
NRY95_19620	COG0697	spore germination
NRY95_19625	COG1666	GTP binding
NRY95_19670	COG3485	protocatechuate 3,4-dioxygenase
NRY95_19695	COG1187	pseudouridine synthase activity
NRY95_19720	COG2205	protein histidine kinase activity
NRY95_19720	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NRY95_19745	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NRY95_19805	COG0842	Transport permease protein
NRY95_19810	COG1131	(ABC) transporter
NRY95_19815	COG0025	NhaP-type Na H and K H
NRY95_19825	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
NRY95_19830	COG1573	uracil-dna glycosylase
NRY95_19840	COG3384	dioxygenase
NRY95_19865	COG0667	Aldo Keto reductase
NRY95_19870	COG0667	Aldo Keto reductase
NRY95_19885	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
NRY95_19890	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NRY95_19910	COG3706	GGDEF domain
NRY95_19920	COG5001	Diguanylate cyclase
NRY95_19950	COG3275	phosphorelay sensor kinase activity
NRY95_19975	COG0531	amino acid
NRY95_19985	COG5297	Belongs to the glycosyl hydrolase family 6
NRY95_19985	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
NRY95_19990	COG0612	Peptidase, M16
NRY95_20005	COG0741	lytic transglycosylase activity
NRY95_20035	COG2207	Transcriptional regulator
NRY95_20050	COG1113	amino acid transport
NRY95_20055	COG0697	spore germination
NRY95_20065	COG0583	DNA-binding transcription factor activity
NRY95_20080	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
NRY95_20090	COG5520	Belongs to the glycosyl hydrolase 30 family
NRY95_20100	COG3550	peptidyl-serine autophosphorylation
NRY95_20135	COG0367	asparagine synthase
NRY95_20140	COG1506	peptidase
NRY95_20140	COG0823	Involved in the tonB-independent uptake of proteins
NRY95_20145	COG4771	TonB-dependent receptor
NRY95_20240	COG0840	transmembrane signaling receptor activity
NRY95_20285	COG2353	YceI-like domain
NRY95_20310	COG0584	glycerophosphoryl diester phosphodiesterase
NRY95_20325	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
NRY95_20340	COG2827	Endonuclease containing a URI domain
NRY95_20345	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NRY95_20350	COG4206	TonB-dependent receptor
NRY95_20365	COG2189	Belongs to the N(4) N(6)-methyltransferase family
NRY95_20375	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
NRY95_20380	COG0459	protein refolding
NRY95_20390	COG2356	endonuclease I
NRY95_20395	COG1324	tolerance protein
NRY95_20405	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
NRY95_20435	COG0297	glycogen (starch) synthase activity
NRY95_20465	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
NRY95_20470	COG0489	protein tyrosine kinase activity
NRY95_20470	COG3206	protein involved in exopolysaccharide biosynthesis
NRY95_20495	COG2199	diguanylate cyclase activity
NRY95_20495	COG2200	EAL domain
NRY95_20495	COG3287	FIST C domain
NRY95_20505	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
NRY95_20525	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
NRY95_20530	COG0511	ligase activity, forming carbon-carbon bonds
NRY95_20540	COG0439	Biotin carboxylase
NRY95_20555	COG2264	protein methyltransferase activity
NRY95_20575	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
NRY95_20580	COG4589	Belongs to the CDS family
NRY95_20605	COG2453	phosphatase
NRY95_20605	COG0671	phosphoesterase, PA-phosphatase related
NRY95_20615	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
NRY95_20630	COG0151	Belongs to the GarS family
NRY95_20650	COG1289	transmembrane transporter activity
NRY95_20655	COG2814	Major facilitator Superfamily
NRY95_20735	COG1051	belongs to the nudix hydrolase family
NRY95_20760	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
NRY95_20775	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
NRY95_20780	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NRY95_20785	COG0730	response to heat
NRY95_20790	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
NRY95_20790	COG4124	Belongs to the glycosyl hydrolase 26 family
NRY95_20800	COG0134	indole-3-glycerol-phosphate synthase activity
NRY95_20805	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
NRY95_20835	COG1597	lipid kinase activity
NRY95_20850	COG0484	heat shock protein binding
NRY95_20885	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NRY95_20890	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
NRY95_20890	COG2111	Na H antiporter
NRY95_20895	COG1006	Multisubunit Na H antiporter MnhC subunit
NRY95_20900	COG0651	ATP synthesis coupled electron transport
NRY95_20905	COG1863	multisubunit Na H antiporter MnhE subunit
NRY95_20910	COG2212	antiporter activity
NRY95_20915	COG1320	monovalent cation:proton antiporter activity
NRY95_20940	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
NRY95_20945	COG2852	Protein conserved in bacteria
NRY95_20965	COG3104	oligopeptide transport
NRY95_20995	COG0508	dehydrogenase complex catalyzes the overall conversion of
NRY95_21005	COG3227	Zinc metalloprotease (Elastase)
NRY95_21010	COG0513	Belongs to the DEAD box helicase family
NRY95_21020	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_21025	COG0702	epimerase
NRY95_21030	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NRY95_21035	COG1285	pathogenesis
NRY95_21050	COG2354	Protein conserved in bacteria
NRY95_21075	COG3264	Mechanosensitive ion channel
NRY95_21075	COG1196	nuclear chromosome segregation
NRY95_21080	COG3321	synthase
NRY95_21080	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_21080	COG0604	alcohol dehydrogenase
NRY95_21100	COG1595	DNA-templated transcription, initiation
NRY95_21155	COG1414	Transcriptional regulator
NRY95_21160	COG0738	Major facilitator superfamily
NRY95_21165	COG3254	rhamnose metabolic process
NRY95_21170	COG4948	Mandelate Racemase Muconate Lactonizing
NRY95_21175	COG0179	Fumarylacetoacetate (FAA) hydrolase
NRY95_21180	COG1028	Short-chain dehydrogenase reductase Sdr
NRY95_21240	COG4807	Protein conserved in bacteria
NRY95_21260	COG0708	Exodeoxyribonuclease III
NRY95_21275	COG5507	3-demethylubiquinone-9 3-methyltransferase
NRY95_21280	COG4773	Receptor
NRY95_21295	COG1506	peptidase
NRY95_21295	COG0823	Involved in the tonB-independent uptake of proteins
NRY95_21305	COG3220	belongs to the UPF0276 family
NRY95_21380	COG0625	glutathione transferase activity
NRY95_21400	COG4555	ABC transporter
NRY95_21410	COG1476	TRANSCRIPTIONal
NRY95_21425	COG0543	2 iron, 2 sulfur cluster binding
NRY95_21425	COG0633	Ferredoxin
NRY95_21430	COG1131	(ABC) transporter
NRY95_21435	COG0842	Transport permease protein
NRY95_21540	COG0084	hydrolase, TatD family'
NRY95_21545	COG1643	Atp-dependent helicase
NRY95_21555	COG1187	pseudouridine synthase activity
NRY95_21570	COG2130	NADP-dependent
NRY95_21575	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
NRY95_21590	COG0583	DNA-binding transcription factor activity
NRY95_21615	COG0659	secondary active sulfate transmembrane transporter activity
NRY95_21645	COG2224	Isocitrate lyase
NRY95_21650	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
NRY95_21655	COG0583	DNA-binding transcription factor activity
NRY95_21660	COG0475	glutathione-regulated potassium exporter activity
NRY95_21685	COG0681	Belongs to the peptidase S26 family
NRY95_21690	COG0339	signal peptide processing
NRY95_21695	COG1446	asparaginase
NRY95_21705	COG1595	DNA-templated transcription, initiation
NRY95_21735	COG0564	pseudouridine synthase activity
NRY95_21760	COG1181	Belongs to the D-alanine--D-alanine ligase family
NRY95_21770	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NRY95_21785	COG0318	PFAM AMP-dependent synthetase and ligase
NRY95_21795	COG0583	DNA-binding transcription factor activity
NRY95_21800	COG0727	PFAM Uncharacterised protein family (UPF0153)
NRY95_21805	COG0596	Alpha beta hydrolase
NRY95_21815	COG3177	Filamentation induced by cAMP protein fic
NRY95_21820	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
NRY95_21875	COG0612	Peptidase, M16
NRY95_21890	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
NRY95_21910	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
NRY95_21915	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
NRY95_21955	COG0183	Belongs to the thiolase family
NRY95_21965	COG2032	superoxide dismutase activity
NRY95_21970	COG2032	superoxide dismutase activity
NRY95_21975	COG2204	response regulator
NRY95_21980	COG3852	Histidine kinase
NRY95_21985	COG0004	ammonium transporteR
NRY95_21990	COG0347	Belongs to the P(II) protein family
NRY95_21995	COG0174	glutamine synthetase
NRY95_22000	COG1968	undecaprenyl-diphosphatase activity
NRY95_22005	COG1881	PFAM PEBP family protein
NRY95_22025	COG2050	protein possibly involved in aromatic compounds catabolism
NRY95_22030	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NRY95_22040	COG2062	phosphohistidine phosphatase, SixA
NRY95_22045	COG1192	Involved in chromosome partitioning
NRY95_22050	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
NRY95_22090	COG0477	Major facilitator Superfamily
NRY95_22130	COG3549	Plasmid maintenance system killer
NRY95_22135	COG1111	helicase
NRY95_22135	COG1205	dead DEAH box helicase
NRY95_22170	COG0640	Transcriptional regulator
NRY95_22190	COG0067	glutamate synthase
NRY95_22190	COG0069	glutamate synthase activity
NRY95_22190	COG0070	glutamate synthase
NRY95_22195	COG0493	'glutamate synthase
NRY95_22215	COG2211	Major facilitator Superfamily
NRY95_22230	COG3693	PFAM glycoside hydrolase, family 10
NRY95_22235	COG1904	glucuronate isomerase
NRY95_22250	COG3386	PFAM SMP-30 Gluconolaconase
NRY95_22260	COG4771	TonB-dependent receptor
NRY95_22275	COG3046	protein related to deoxyribodipyrimidine photolyase
NRY95_22290	COG0246	Mannitol dehydrogenase
NRY95_22295	COG1472	Belongs to the glycosyl hydrolase 3 family
NRY95_22315	COG3661	Belongs to the glycosyl hydrolase 67 family
NRY95_22325	COG2115	Belongs to the xylose isomerase family
NRY95_22330	COG0037	tRNA processing
NRY95_22345	COG0840	transmembrane signaling receptor activity
NRY95_22355	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
NRY95_22365	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
NRY95_22375	COG0805	protein transport
NRY95_22385	COG0519	Catalyzes the synthesis of GMP from XMP
NRY95_22385	COG0518	GMP synthase (glutamine-hydrolyzing) activity
NRY95_22390	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
NRY95_22405	COG0210	DNA helicase
NRY95_22410	COG1435	thymidine kinase activity
NRY95_22420	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
NRY95_22435	COG0515	serine threonine protein kinase
NRY95_22435	COG2815	serine threonine protein kinase
NRY95_22445	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
NRY95_22460	COG1119	ATPase activity
NRY95_22475	COG1574	metal-dependent hydrolase with the TIM-barrel fold
NRY95_22485	COG1335	isochorismatase
NRY95_22500	COG1733	regulation of RNA biosynthetic process
NRY95_22520	COG0706	membrane insertase activity