locus-tag class description XCR_0001 PF11638 DnaA N-terminal domain XCR_0001 PF08299 Bacterial dnaA protein helix-turn-helix XCR_0001 PF00308 Bacterial dnaA protein XCR_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain XCR_0002 PF02767 DNA polymerase III beta subunit, central domain XCR_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain XCR_0003 PF02463 RecF/RecN/SMC N terminal domain XCR_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_0004 PF01751 Toprim domain XCR_0004 PF00986 DNA gyrase B subunit, carboxyl terminus XCR_0004 PF00204 DNA gyrase B XCR_0004 PF18053 DNA gyrase B subunit insert domain XCR_0006 PF01435 Peptidase family M48 XCR_0008 PF03544 Gram-negative bacterial TonB protein C-terminal XCR_0009 PF01618 MotA/TolQ/ExbB proton channel family XCR_0010 PF02472 Biopolymer transport protein ExbD/TolR XCR_0011 PF02472 Biopolymer transport protein ExbD/TolR XCR_0012 PF02472 Biopolymer transport protein ExbD/TolR XCR_0013 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ XCR_0015 PF13091 PLD-like domain XCR_0015 PF13396 Phospholipase_D-nuclease N-terminal XCR_0016 PF04055 Radical SAM superfamily XCR_0019 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) XCR_0024 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XCR_0024 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XCR_0024 PF01842 ACT domain XCR_0026 PF03572 Peptidase family S41 XCR_0026 PF13180 PDZ domain XCR_0027 PF01551 Peptidase family M23 XCR_0030 PF04389 Peptidase family M28 XCR_0033 PF00150 Cellulase (glycosyl hydrolase family 5) XCR_0034 PF00150 Cellulase (glycosyl hydrolase family 5) XCR_0036 PF00150 Cellulase (glycosyl hydrolase family 5) XCR_0037 PF00107 Zinc-binding dehydrogenase XCR_0037 PF08240 Alcohol dehydrogenase GroES-like domain XCR_0040 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster XCR_0040 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCR_0041 PF00310 Glutamine amidotransferases class-II XCR_0041 PF04898 Glutamate synthase central domain XCR_0041 PF01645 Conserved region in glutamate synthase XCR_0041 PF01493 GXGXG motif XCR_0045 PF00398 Ribosomal RNA adenine dimethylase XCR_0048 PF02678 Pirin XCR_0048 PF05726 Pirin C-terminal cupin domain XCR_0050 PF02525 Flavodoxin-like fold XCR_0051 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_0051 PF03466 LysR substrate binding domain XCR_0054 PF03466 LysR substrate binding domain XCR_0054 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_0064 PF09369 Domain of unknown function (DUF1998) XCR_0064 PF00271 Helicase conserved C-terminal domain XCR_0064 PF00270 DEAD/DEAH box helicase XCR_0065 PF13784 Fic/DOC family N-terminal XCR_0065 PF02661 Fic/DOC family XCR_0066 PF03006 Haemolysin-III related XCR_0078 PF00144 Beta-lactamase XCR_0079 PF05532 CsbD-like XCR_0080 PF00072 Response regulator receiver domain XCR_0080 PF00196 Bacterial regulatory proteins, luxR family XCR_0088 PF16485 Protealysin propeptide XCR_0088 PF02868 Thermolysin metallopeptidase, alpha-helical domain XCR_0088 PF01447 Thermolysin metallopeptidase, catalytic domain XCR_0090 PF13344 Haloacid dehalogenase-like hydrolase XCR_0090 PF00293 NUDIX domain XCR_0091 PF01594 AI-2E family transporter XCR_0093 PF07859 alpha/beta hydrolase fold XCR_0095 PF00085 Thioredoxin XCR_0096 PF08946 Osmosensory transporter coiled coil XCR_0096 PF00083 Sugar (and other) transporter XCR_0104 PF07726 ATPase family associated with various cellular activities (AAA) XCR_0104 PF17863 AAA lid domain XCR_0110 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain XCR_0111 PF00155 Aminotransferase class I and II XCR_0112 PF07715 TonB-dependent Receptor Plug Domain XCR_0112 PF00593 TonB dependent receptor XCR_0117 PF00171 Aldehyde dehydrogenase family XCR_0121 PF02735 Ku70/Ku80 beta-barrel domain XCR_0122 PF13298 DNA polymerase Ligase (LigD) XCR_0122 PF04679 ATP dependent DNA ligase C terminal region XCR_0122 PF01068 ATP dependent DNA ligase domain XCR_0124 PF01070 FMN-dependent dehydrogenase XCR_0125 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family XCR_0127 PF07730 Histidine kinase XCR_0128 PF00072 Response regulator receiver domain XCR_0128 PF00196 Bacterial regulatory proteins, luxR family XCR_0134 PF00486 Transcriptional regulatory protein, C terminal XCR_0134 PF18500 CadC C-terminal domain 1 XCR_0135 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase XCR_0135 PF07055 Enoyl reductase FAD binding domain XCR_0135 PF12241 Trans-2-enoyl-CoA reductase catalytic region XCR_0138 PF00294 pfkB family carbohydrate kinase XCR_0141 PF01095 Pectinesterase XCR_0146 PF13683 Integrase core domain XCR_0146 PF13276 HTH-like domain XCR_0147 PF01527 Transposase XCR_0149 PF02534 Type IV secretory system Conjugative DNA transfer XCR_0150 PF12697 Alpha/beta hydrolase family XCR_0151 PF00762 Ferrochelatase XCR_0153 PF02416 mttA/Hcf106 family XCR_0154 PF02416 mttA/Hcf106 family XCR_0155 PF00902 Sec-independent protein translocase protein (TatC) XCR_0158 PF00958 GMP synthase C terminal domain XCR_0158 PF00117 Glutamine amidotransferase class-I XCR_0159 PF00437 Type II/IV secretion system protein XCR_0160 PF02091 Glycyl-tRNA synthetase alpha subunit XCR_0161 PF02092 Glycyl-tRNA synthetase beta subunit XCR_0161 PF05746 DALR anticodon binding domain XCR_0162 PF17243 POTRA domain TamA domain 1 XCR_0162 PF01103 Surface antigen XCR_0163 PF04357 TamB, inner membrane protein subunit of TAM complex XCR_0167 PF13360 PQQ-like domain XCR_0167 PF01011 PQQ enzyme repeat XCR_0167 PF13570 PQQ-like domain XCR_0171 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain XCR_0171 PF06165 Glycosyltransferase family 36 XCR_0172 PF05598 Transposase domain (DUF772) XCR_0172 PF01609 Transposase DDE domain XCR_0173 PF00512 His Kinase A (phospho-acceptor) domain XCR_0173 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_0173 PF00072 Response regulator receiver domain XCR_0173 PF09456 RcsC Alpha-Beta-Loop (ABL) XCR_0175 PF02659 Putative manganese efflux pump XCR_0178 PF09339 IclR helix-turn-helix domain XCR_0178 PF01614 Bacterial transcriptional regulator XCR_0179 PF07690 Major Facilitator Superfamily XCR_0180 PF05336 L-rhamnose mutarotase XCR_0182 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XCR_0182 PF13378 Enolase C-terminal domain-like XCR_0183 PF01557 Fumarylacetoacetate (FAA) hydrolase family XCR_0186 PF00248 Aldo/keto reductase family XCR_0187 PF04616 Glycosyl hydrolases family 43 XCR_0187 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XCR_0191 PF05598 Transposase domain (DUF772) XCR_0191 PF01609 Transposase DDE domain XCR_0193 PF00196 Bacterial regulatory proteins, luxR family XCR_0193 PF00072 Response regulator receiver domain XCR_0194 PF00501 AMP-binding enzyme XCR_0194 PF16177 Acetyl-coenzyme A synthetase N-terminus XCR_0194 PF13193 AMP-binding enzyme C-terminal domain XCR_0197 PF04341 Protein of unknown function, DUF485 XCR_0198 PF00474 Sodium:solute symporter family XCR_0201 PF00639 PPIC-type PPIASE domain XCR_0202 PF00480 ROK family XCR_0214 PF04226 Transglycosylase associated protein XCR_0215 PF16655 PhoD-like phosphatase, N-terminal domain XCR_0215 PF09423 PhoD-like phosphatase XCR_0216 PF01648 4'-phosphopantetheinyl transferase superfamily XCR_0217 PF02527 rRNA small subunit methyltransferase G XCR_0222 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCR_0222 PF00529 HlyD membrane-fusion protein of T1SS XCR_0224 PF00873 AcrB/AcrD/AcrF family XCR_0226 PF00830 Ribosomal L28 family XCR_0227 PF00471 Ribosomal protein L33 XCR_0228 PF04909 Amidohydrolase XCR_0229 PF04303 PrpF protein XCR_0230 PF03737 Aldolase/RraA XCR_0231 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_0231 PF03466 LysR substrate binding domain XCR_0232 PF13091 PLD-like domain XCR_0232 PF13396 Phospholipase_D-nuclease N-terminal XCR_0234 PF00580 UvrD/REP helicase N-terminal domain XCR_0234 PF13361 UvrD-like helicase C-terminal domain XCR_0237 PF14602 Hexapeptide repeat of succinyl-transferase XCR_0237 PF12464 Maltose acetyltransferase XCR_0241 PF01367 5'-3' exonuclease, C-terminal SAM fold XCR_0241 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XCR_0241 PF00476 DNA polymerase family A XCR_0241 PF01612 3'-5' exonuclease XCR_0242 PF01218 Coproporphyrinogen III oxidase XCR_0249 PF04820 Tryptophan halogenase XCR_0250 PF00550 Phosphopantetheine attachment site XCR_0262 PF04820 Tryptophan halogenase XCR_0263 PF00535 Glycosyl transferase family 2 XCR_0265 PF00109 Beta-ketoacyl synthase, N-terminal domain XCR_0265 PF02801 Beta-ketoacyl synthase, C-terminal domain XCR_0267 PF05166 YcgL domain XCR_0269 PF01451 Low molecular weight phosphotyrosine protein phosphatase XCR_0270 PF00723 Glycosyl hydrolases family 15 XCR_0271 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XCR_0271 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XCR_0272 PF02254 TrkA-N domain XCR_0272 PF00999 Sodium/hydrogen exchanger family XCR_0273 PF00194 Eukaryotic-type carbonic anhydrase XCR_0274 PF01769 Divalent cation transporter XCR_0274 PF00571 CBS domain XCR_0274 PF03448 MgtE intracellular N domain XCR_0277 PF13607 Succinyl-CoA ligase like flavodoxin domain XCR_0277 PF00583 Acetyltransferase (GNAT) family XCR_0277 PF13380 CoA binding domain XCR_0280 PF03477 ATP cone domain XCR_0280 PF00317 Ribonucleotide reductase, all-alpha domain XCR_0280 PF02867 Ribonucleotide reductase, barrel domain XCR_0282 PF00268 Ribonucleotide reductase, small chain XCR_0285 PF03061 Thioesterase superfamily XCR_0289 PF08546 Ketopantoate reductase PanE/ApbA C terminal XCR_0289 PF02558 Ketopantoate reductase PanE/ApbA XCR_0291 PF01061 ABC-2 type transporter XCR_0292 PF00005 ABC transporter XCR_0293 PF00175 Oxidoreductase NAD-binding domain XCR_0293 PF01383 CpcD/allophycocyanin linker domain XCR_0294 PF01229 Glycosyl hydrolases family 39 XCR_0295 PF01545 Cation efflux family XCR_0296 PF02583 Metal-sensitive transcriptional repressor XCR_0300 PF01381 Helix-turn-helix XCR_0302 PF00005 ABC transporter XCR_0310 PF00043 Glutathione S-transferase, C-terminal domain XCR_0310 PF02798 Glutathione S-transferase, N-terminal domain XCR_0311 PF00326 Prolyl oligopeptidase family XCR_0311 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XCR_0316 PF00490 Delta-aminolevulinic acid dehydratase XCR_0317 PF00667 FAD binding domain XCR_0317 PF00258 Flavodoxin XCR_0317 PF00175 Oxidoreductase NAD-binding domain XCR_0319 PF08501 Shikimate dehydrogenase substrate binding domain XCR_0319 PF01488 Shikimate / quinate 5-dehydrogenase XCR_0319 PF18317 Shikimate 5'-dehydrogenase C-terminal domain XCR_0322 PF06733 DEAD_2 XCR_0322 PF13307 Helicase C-terminal domain XCR_0324 PF00199 Catalase XCR_0324 PF06628 Catalase-related immune-responsive XCR_0329 PF01207 Dihydrouridine synthase (Dus) XCR_0331 PF00486 Transcriptional regulatory protein, C terminal XCR_0331 PF00072 Response regulator receiver domain XCR_0332 PF00512 His Kinase A (phospho-acceptor) domain XCR_0332 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_0332 PF00672 HAMP domain XCR_0335 PF06167 Glucose-regulated metallo-peptidase M90 XCR_0337 PF08279 HTH domain XCR_0337 PF02237 Biotin protein ligase C terminal domain XCR_0337 PF03099 Biotin/lipoate A/B protein ligase family XCR_0338 PF03309 Type III pantothenate kinase XCR_0343 PF12833 Helix-turn-helix domain XCR_0343 PF02311 AraC-like ligand binding domain XCR_0344 PF02223 Thymidylate kinase XCR_0350 PF00491 Arginase family XCR_0353 PF05532 CsbD-like XCR_0354 PF00579 tRNA synthetases class I (W and Y) XCR_0355 PF00753 Metallo-beta-lactamase superfamily XCR_0358 PF00892 EamA-like transporter family XCR_0359 PF00892 EamA-like transporter family XCR_0363 PF00005 ABC transporter XCR_0365 PF13533 Biotin-lipoyl like XCR_0367 PF07730 Histidine kinase XCR_0368 PF00196 Bacterial regulatory proteins, luxR family XCR_0368 PF00072 Response regulator receiver domain XCR_0372 PF00883 Cytosol aminopeptidase family, catalytic domain XCR_0372 PF02789 Cytosol aminopeptidase family, N-terminal domain XCR_0373 PF13419 Haloacid dehalogenase-like hydrolase XCR_0374 PF01594 AI-2E family transporter XCR_0378 PF00595 PDZ domain XCR_0382 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_0382 PF00512 His Kinase A (phospho-acceptor) domain XCR_0382 PF08521 Two-component sensor kinase N-terminal XCR_0383 PF00486 Transcriptional regulatory protein, C terminal XCR_0383 PF00072 Response regulator receiver domain XCR_0384 PF00072 Response regulator receiver domain XCR_0384 PF00486 Transcriptional regulatory protein, C terminal XCR_0386 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCR_0386 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XCR_0387 PF01370 NAD dependent epimerase/dehydratase family XCR_0387 PF08338 Domain of unknown function (DUF1731) XCR_0396 PF01139 tRNA-splicing ligase RtcB XCR_0403 PF00440 Bacterial regulatory proteins, tetR family XCR_0404 PF00111 2Fe-2S iron-sulfur cluster binding domain XCR_0404 PF00970 Oxidoreductase FAD-binding domain XCR_0404 PF00175 Oxidoreductase NAD-binding domain XCR_0405 PF00487 Fatty acid desaturase XCR_0408 PF00563 EAL domain XCR_0408 PF12792 CSS motif domain associated with EAL XCR_0412 PF01078 Magnesium chelatase, subunit ChlI XCR_0412 PF13335 Magnesium chelatase, subunit ChlI C-terminal XCR_0413 PF04380 Membrane fusogenic activity XCR_0414 PF00543 Nitrogen regulatory protein P-II XCR_0418 PF17284 Spermidine synthase tetramerisation domain XCR_0419 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XCR_0419 PF17810 Arginine decarboxylase helical bundle domain XCR_0419 PF17944 Arginine decarboxylase C-terminal helical extension XCR_0420 PF00668 Condensation domain XCR_0420 PF13193 AMP-binding enzyme C-terminal domain XCR_0420 PF00501 AMP-binding enzyme XCR_0420 PF00975 Thioesterase domain XCR_0420 PF00550 Phosphopantetheine attachment site XCR_0421 PF03033 Glycosyltransferase family 28 N-terminal domain XCR_0423 PF01757 Acyltransferase family XCR_0425 PF00106 short chain dehydrogenase XCR_0428 PF00750 tRNA synthetases class I (R) XCR_0428 PF05746 DALR anticodon binding domain XCR_0428 PF03485 Arginyl tRNA synthetase N terminal domain XCR_0429 PF04002 RadC-like JAB domain XCR_0430 PF02441 Flavoprotein XCR_0430 PF04127 DNA / pantothenate metabolism flavoprotein XCR_0431 PF00692 dUTPase XCR_0432 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XCR_0432 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XCR_0432 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XCR_0432 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XCR_0435 PF00535 Glycosyl transferase family 2 XCR_0436 PF01370 NAD dependent epimerase/dehydratase family XCR_0439 PF02195 ParB-like nuclease domain XCR_0439 PF17762 HTH domain found in ParB protein XCR_0440 PF13614 AAA domain XCR_0442 PF00156 Phosphoribosyl transferase domain XCR_0443 PF03372 Endonuclease/Exonuclease/phosphatase family XCR_0445 PF07690 Major Facilitator Superfamily XCR_0447 PF03702 Anhydro-N-acetylmuramic acid kinase XCR_0448 PF04225 Opacity-associated protein A LysM-like domain XCR_0448 PF01551 Peptidase family M23 XCR_0449 PF00579 tRNA synthetases class I (W and Y) XCR_0455 PF18327 Proline utilization A proline dehydrogenase N-terminal domain XCR_0455 PF14850 DNA-binding domain of Proline dehydrogenase XCR_0455 PF00171 Aldehyde dehydrogenase family XCR_0455 PF01619 Proline dehydrogenase XCR_0458 PF02790 Cytochrome C oxidase subunit II, transmembrane domain XCR_0458 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XCR_0459 PF00115 Cytochrome C and Quinol oxidase polypeptide I XCR_0461 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 XCR_0462 PF00510 Cytochrome c oxidase subunit III XCR_0467 PF01040 UbiA prenyltransferase family XCR_0468 PF11412 Disulphide bond corrector protein DsbC XCR_0468 PF02683 Cytochrome C biogenesis protein transmembrane region XCR_0469 PF13593 SBF-like CPA transporter family (DUF4137) XCR_0471 PF01807 CHC2 zinc finger XCR_0471 PF10410 DnaB-helicase binding domain of primase XCR_0471 PF08278 DNA primase DnaG DnaB-binding XCR_0471 PF08275 DNA primase catalytic core, N-terminal domain XCR_0472 PF03631 Virulence factor BrkB XCR_0474 PF09424 Yqey-like protein XCR_0475 PF01165 Ribosomal protein S21 XCR_0477 PF00814 Glycoprotease family XCR_0478 PF02152 Dihydroneopterin aldolase XCR_0480 PF00933 Glycosyl hydrolase family 3 N terminal domain XCR_0480 PF14310 Fibronectin type III-like domain XCR_0480 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCR_0482 PF07995 Glucose / Sorbosone dehydrogenase XCR_0483 PF05360 yiaA/B two helix domain XCR_0486 PF13520 Amino acid permease XCR_0488 PF13378 Enolase C-terminal domain-like XCR_0488 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XCR_0490 PF01510 N-acetylmuramoyl-L-alanine amidase XCR_0494 PF01471 Putative peptidoglycan binding domain XCR_0495 PF01427 D-ala-D-ala dipeptidase XCR_0503 PF07063 Domain of unknown function (DUF1338) XCR_0504 PF04542 Sigma-70 region 2 XCR_0504 PF08281 Sigma-70, region 4 XCR_0508 PF00873 AcrB/AcrD/AcrF family XCR_0510 PF00873 AcrB/AcrD/AcrF family XCR_0511 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCR_0513 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term XCR_0513 PF14489 QueF-like protein XCR_0517 PF03971 Monomeric isocitrate dehydrogenase XCR_0519 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_0519 PF03466 LysR substrate binding domain XCR_0520 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) XCR_0522 PF07498 Rho termination factor, N-terminal domain XCR_0522 PF07497 Rho termination factor, RNA-binding domain XCR_0522 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCR_0524 PF00085 Thioredoxin XCR_0525 PF12300 ATP-dependent RNA helicase RhlB XCR_0525 PF00271 Helicase conserved C-terminal domain XCR_0525 PF00270 DEAD/DEAH box helicase XCR_0526 PF00005 ABC transporter XCR_0527 PF18075 FtsX extracellular domain XCR_0528 PF00072 Response regulator receiver domain XCR_0528 PF01339 CheB methylesterase XCR_0529 PF03167 Uracil DNA glycosylase superfamily XCR_0530 PF04542 Sigma-70 region 2 XCR_0530 PF04545 Sigma-70, region 4 XCR_0531 PF03458 UPF0126 domain XCR_0532 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCR_0535 PF00043 Glutathione S-transferase, C-terminal domain XCR_0535 PF13417 Glutathione S-transferase, N-terminal domain XCR_0536 PF18319 PriA DNA helicase Cys-rich region (CRR) domain XCR_0536 PF18074 Primosomal protein N C-terminal domain XCR_0536 PF17764 3′ DNA-binding domain (3′BD) XCR_0536 PF00270 DEAD/DEAH box helicase XCR_0536 PF00271 Helicase conserved C-terminal domain XCR_0542 PF01554 MatE XCR_0543 PF01343 Peptidase family S49 XCR_0546 PF00360 Phytochrome region XCR_0546 PF00990 Diguanylate cyclase, GGDEF domain XCR_0546 PF01590 GAF domain XCR_0546 PF00563 EAL domain XCR_0549 PF01300 Telomere recombination XCR_0550 PF01131 DNA topoisomerase XCR_0550 PF13368 Topoisomerase C-terminal repeat XCR_0550 PF01751 Toprim domain XCR_0552 PF00114 Pilin (bacterial filament) XCR_0552 PF07963 Prokaryotic N-terminal methylation motif XCR_0553 PF04361 Protein of unknown function (DUF494) XCR_0554 PF02481 DNA recombination-mediator protein A XCR_0554 PF17782 DprA winged helix domain XCR_0555 PF01476 LysM domain XCR_0556 PF01327 Polypeptide deformylase XCR_0558 PF02911 Formyl transferase, C-terminal domain XCR_0558 PF00551 Formyl transferase XCR_0559 PF01029 NusB family XCR_0559 PF01189 16S rRNA methyltransferase RsmB/F XCR_0561 PF00535 Glycosyl transferase family 2 XCR_0566 PF00925 GTP cyclohydrolase II XCR_0568 PF03279 Bacterial lipid A biosynthesis acyltransferase XCR_0569 PF02580 D-Tyr-tRNA(Tyr) deacylase XCR_0570 PF04539 Sigma-70 region 3 XCR_0570 PF04542 Sigma-70 region 2 XCR_0570 PF00140 Sigma-70 factor, region 1.2 XCR_0570 PF04546 Sigma-70, non-essential region XCR_0570 PF04545 Sigma-70, region 4 XCR_0570 PF03979 Sigma-70 factor, region 1.1 XCR_0574 PF00990 Diguanylate cyclase, GGDEF domain XCR_0574 PF00563 EAL domain XCR_0574 PF01590 GAF domain XCR_0574 PF00360 Phytochrome region XCR_0578 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_0578 PF03466 LysR substrate binding domain XCR_0580 PF00248 Aldo/keto reductase family XCR_0585 PF01042 Endoribonuclease L-PSP XCR_0586 PF03466 LysR substrate binding domain XCR_0586 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_0588 PF00005 ABC transporter XCR_0591 PF00593 TonB dependent receptor XCR_0591 PF07715 TonB-dependent Receptor Plug Domain XCR_0597 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XCR_0597 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XCR_0603 PF00107 Zinc-binding dehydrogenase XCR_0603 PF08240 Alcohol dehydrogenase GroES-like domain XCR_0603 PF13823 Alcohol dehydrogenase GroES-associated XCR_0607 PF00664 ABC transporter transmembrane region XCR_0607 PF00005 ABC transporter XCR_0609 PF03275 UDP-galactopyranose mutase XCR_0611 PF16363 GDP-mannose 4,6 dehydratase XCR_0616 PF02322 Cytochrome bd terminal oxidase subunit II XCR_0617 PF01654 Cytochrome bd terminal oxidase subunit I XCR_0620 PF00158 Sigma-54 interaction domain XCR_0620 PF02954 Bacterial regulatory protein, Fis family XCR_0620 PF00072 Response regulator receiver domain XCR_0623 PF01339 CheB methylesterase XCR_0623 PF08448 PAS fold XCR_0623 PF03705 CheR methyltransferase, all-alpha domain XCR_0623 PF01739 CheR methyltransferase, SAM binding domain XCR_0627 PF05067 Manganese containing catalase XCR_0628 PF05974 Domain of unknown function (DUF892) XCR_0629 PF05974 Domain of unknown function (DUF892) XCR_0630 PF00857 Isochorismatase family XCR_0634 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_0634 PF02743 Cache domain XCR_0634 PF00672 HAMP domain XCR_0634 PF06580 Histidine kinase XCR_0635 PF00072 Response regulator receiver domain XCR_0635 PF04397 LytTr DNA-binding domain XCR_0638 PF13520 Amino acid permease XCR_0641 PF01431 Peptidase family M13 XCR_0641 PF05649 Peptidase family M13 XCR_0643 PF00248 Aldo/keto reductase family XCR_0646 PF03358 NADPH-dependent FMN reductase XCR_0647 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_0647 PF03466 LysR substrate binding domain XCR_0648 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XCR_0650 PF03167 Uracil DNA glycosylase superfamily XCR_0651 PF02469 Fasciclin domain XCR_0652 PF03795 YCII-related domain XCR_0653 PF00999 Sodium/hydrogen exchanger family XCR_0654 PF00005 ABC transporter XCR_0655 PF01061 ABC-2 type transporter XCR_0660 PF13677 Membrane MotB of proton-channel complex MotA/MotB XCR_0660 PF00691 OmpA family XCR_0661 PF01618 MotA/TolQ/ExbB proton channel family XCR_0663 PF01641 SelR domain XCR_0665 PF01037 Lrp/AsnC ligand binding domain XCR_0666 PF01266 FAD dependent oxidoreductase XCR_0667 PF00842 Alanine racemase, C-terminal domain XCR_0667 PF01168 Alanine racemase, N-terminal domain XCR_0671 PF00672 HAMP domain XCR_0671 PF00989 PAS fold XCR_0671 PF00512 His Kinase A (phospho-acceptor) domain XCR_0671 PF18698 Histidine kinase sensor domain XCR_0671 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_0673 PF07995 Glucose / Sorbosone dehydrogenase XCR_0675 PF05175 Methyltransferase small domain XCR_0675 PF08468 Methyltransferase small domain N-terminal XCR_0676 PF01479 S4 domain XCR_0676 PF00849 RNA pseudouridylate synthase XCR_0677 PF13419 Haloacid dehalogenase-like hydrolase XCR_0682 PF04461 Protein of unknown function (DUF520) XCR_0684 PF00892 EamA-like transporter family XCR_0685 PF00005 ABC transporter XCR_0685 PF09383 NIL domain XCR_0686 PF00528 Binding-protein-dependent transport system inner membrane component XCR_0687 PF03180 NLPA lipoprotein XCR_0694 PF02817 e3 binding domain XCR_0694 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XCR_0694 PF00364 Biotin-requiring enzyme XCR_0696 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCR_0696 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XCR_0697 PF01979 Amidohydrolase family XCR_0700 PF00119 ATP synthase A chain XCR_0701 PF00137 ATP synthase subunit C XCR_0702 PF00430 ATP synthase B/B' CF(0) XCR_0703 PF00213 ATP synthase delta (OSCP) subunit XCR_0704 PF02874 ATP synthase alpha/beta family, beta-barrel domain XCR_0704 PF00306 ATP synthase alpha/beta chain, C terminal domain XCR_0704 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCR_0705 PF00231 ATP synthase XCR_0706 PF02874 ATP synthase alpha/beta family, beta-barrel domain XCR_0706 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCR_0707 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain XCR_0707 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain XCR_0710 PF12804 MobA-like NTP transferase domain XCR_0710 PF14602 Hexapeptide repeat of succinyl-transferase XCR_0710 PF00132 Bacterial transferase hexapeptide (six repeats) XCR_0712 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_0712 PF00512 His Kinase A (phospho-acceptor) domain XCR_0713 PF00158 Sigma-54 interaction domain XCR_0713 PF02954 Bacterial regulatory protein, Fis family XCR_0713 PF00072 Response regulator receiver domain XCR_0715 PF00005 ABC transporter XCR_0715 PF02687 FtsX-like permease family XCR_0715 PF12704 MacB-like periplasmic core domain XCR_0716 PF12704 MacB-like periplasmic core domain XCR_0716 PF02687 FtsX-like permease family XCR_0717 PF00005 ABC transporter XCR_0718 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCR_0719 PF01380 SIS domain XCR_0724 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XCR_0726 PF05275 Copper resistance protein B precursor (CopB) XCR_0727 PF07731 Multicopper oxidase XCR_0727 PF00394 Multicopper oxidase XCR_0727 PF07732 Multicopper oxidase XCR_0729 PF00291 Pyridoxal-phosphate dependent enzyme XCR_0730 PF01432 Peptidase family M3 XCR_0732 PF02801 Beta-ketoacyl synthase, C-terminal domain XCR_0732 PF00109 Beta-ketoacyl synthase, N-terminal domain XCR_0733 PF07977 FabA-like domain XCR_0734 PF11799 impB/mucB/samB family C-terminal domain XCR_0734 PF00817 impB/mucB/samB family XCR_0734 PF11798 IMS family HHH motif XCR_0735 PF13419 Haloacid dehalogenase-like hydrolase XCR_0738 PF13185 GAF domain XCR_0741 PF01242 6-pyruvoyl tetrahydropterin synthase XCR_0742 PF00271 Helicase conserved C-terminal domain XCR_0742 PF00270 DEAD/DEAH box helicase XCR_0745 PF14497 Glutathione S-transferase, C-terminal domain XCR_0745 PF02798 Glutathione S-transferase, N-terminal domain XCR_0746 PF00437 Type II/IV secretion system protein XCR_0750 PF00571 CBS domain XCR_0750 PF00291 Pyridoxal-phosphate dependent enzyme XCR_0751 PF01053 Cys/Met metabolism PLP-dependent enzyme XCR_0754 PF00005 ABC transporter XCR_0755 PF00069 Protein kinase domain XCR_0755 PF13847 Methyltransferase domain XCR_0756 PF00534 Glycosyl transferases group 1 XCR_0756 PF13439 Glycosyltransferase Family 4 XCR_0759 PF16363 GDP-mannose 4,6 dehydratase XCR_0760 PF01370 NAD dependent epimerase/dehydratase family XCR_0764 PF00535 Glycosyl transferase family 2 XCR_0765 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XCR_0767 PF00766 Electron transfer flavoprotein FAD-binding domain XCR_0767 PF01012 Electron transfer flavoprotein domain XCR_0768 PF01012 Electron transfer flavoprotein domain XCR_0769 PF16363 GDP-mannose 4,6 dehydratase XCR_0771 PF00483 Nucleotidyl transferase XCR_0773 PF04321 RmlD substrate binding domain XCR_0774 PF00483 Nucleotidyl transferase XCR_0774 PF01050 Mannose-6-phosphate isomerase XCR_0775 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XCR_0775 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XCR_0775 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XCR_0775 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XCR_0776 PF01144 Coenzyme A transferase XCR_0777 PF01144 Coenzyme A transferase XCR_0778 PF14307 Glycosyltransferase WbsX XCR_0778 PF05045 Rhamnan synthesis protein F XCR_0782 PF02470 MlaD protein XCR_0782 PF03886 ABC-type transport auxiliary lipoprotein component XCR_0783 PF00005 ABC transporter XCR_0784 PF02405 Permease MlaE XCR_0786 PF00816 H-NS histone family XCR_0787 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XCR_0787 PF03129 Anticodon binding domain XCR_0787 PF04073 Aminoacyl-tRNA editing domain XCR_0789 PF01066 CDP-alcohol phosphatidyltransferase XCR_0794 PF00544 Pectate lyase XCR_0795 PF00544 Pectate lyase XCR_0796 PF00544 Pectate lyase XCR_0797 PF10458 Valyl tRNA synthetase tRNA binding arm XCR_0797 PF08264 Anticodon-binding domain of tRNA XCR_0797 PF00133 tRNA synthetases class I (I, L, M and V) XCR_0801 PF02789 Cytosol aminopeptidase family, N-terminal domain XCR_0801 PF00883 Cytosol aminopeptidase family, catalytic domain XCR_0803 PF03739 Lipopolysaccharide export system permease LptF/LptG XCR_0806 PF02899 Phage integrase, N-terminal SAM-like domain XCR_0806 PF00589 Phage integrase family XCR_0808 PF13098 Thioredoxin-like domain XCR_0808 PF10411 Disulfide bond isomerase protein N-terminus XCR_0809 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain XCR_0809 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal XCR_0809 PF02769 AIR synthase related protein, C-terminal domain XCR_0813 PF03895 YadA-like membrane anchor domain XCR_0813 PF13018 Extended Signal Peptide of Type V secretion system XCR_0813 PF05662 Coiled stalk of trimeric autotransporter adhesin XCR_0813 PF05658 Head domain of trimeric autotransporter adhesin XCR_0814 PF00082 Subtilase family XCR_0814 PF04151 Bacterial pre-peptidase C-terminal domain XCR_0815 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XCR_0815 PF00437 Type II/IV secretion system protein XCR_0817 PF00482 Type II secretion system (T2SS), protein F XCR_0818 PF08334 Type II secretion system (T2SS), protein G XCR_0819 PF12019 Type II transport protein GspH XCR_0820 PF07963 Prokaryotic N-terminal methylation motif XCR_0822 PF03934 Type II secretion system (T2SS), protein K XCR_0823 PF05137 Fimbrial assembly protein (PilN) XCR_0824 PF10741 Type II secretion system (T2SS), protein M subtype b XCR_0826 PF03958 Bacterial type II/III secretion system short domain XCR_0826 PF00263 Bacterial type II and III secretion system protein XCR_0828 PF07702 UTRA domain XCR_0828 PF00392 Bacterial regulatory proteins, gntR family XCR_0830 PF07715 TonB-dependent Receptor Plug Domain XCR_0830 PF00593 TonB dependent receptor XCR_0839 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family XCR_0839 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain XCR_0842 PF03552 Cellulose synthase XCR_0842 PF07238 PilZ domain XCR_0842 PF00535 Glycosyl transferase family 2 XCR_0843 PF03170 Bacterial cellulose synthase subunit XCR_0844 PF01270 Glycosyl hydrolases family 8 XCR_0845 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) XCR_0850 PF03960 ArsC family XCR_0851 PF01327 Polypeptide deformylase XCR_0852 PF12848 ABC transporter XCR_0852 PF00005 ABC transporter XCR_0854 PF00464 Serine hydroxymethyltransferase XCR_0855 PF03477 ATP cone domain XCR_0857 PF01872 RibD C-terminal domain XCR_0857 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region XCR_0859 PF00677 Lumazine binding domain XCR_0860 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase XCR_0860 PF00925 GTP cyclohydrolase II XCR_0861 PF00885 6,7-dimethyl-8-ribityllumazine synthase XCR_0862 PF01029 NusB family XCR_0863 PF00586 AIR synthase related protein, N-terminal domain XCR_0863 PF02769 AIR synthase related protein, C-terminal domain XCR_0869 PF03814 Potassium-transporting ATPase A subunit XCR_0871 PF02669 K+-transporting ATPase, c chain XCR_0872 PF13493 Domain of unknown function (DUF4118) XCR_0872 PF02702 Osmosensitive K+ channel His kinase sensor domain XCR_0872 PF00512 His Kinase A (phospho-acceptor) domain XCR_0872 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_0872 PF13492 GAF domain XCR_0873 PF00486 Transcriptional regulatory protein, C terminal XCR_0873 PF00072 Response regulator receiver domain XCR_0875 PF01565 FAD binding domain XCR_0875 PF02913 FAD linked oxidases, C-terminal domain XCR_0876 PF04307 LexA-binding, inner membrane-associated putative hydrolase XCR_0877 PF02021 Uncharacterised protein family UPF0102 XCR_0879 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XCR_0883 PF02381 MraZ protein, putative antitoxin-like XCR_0884 PF01795 MraW methylase family XCR_0885 PF04999 Cell division protein FtsL XCR_0886 PF03717 Penicillin-binding Protein dimerisation domain XCR_0886 PF00905 Penicillin binding protein transpeptidase domain XCR_0887 PF08245 Mur ligase middle domain XCR_0887 PF02875 Mur ligase family, glutamate ligase domain XCR_0887 PF01225 Mur ligase family, catalytic domain XCR_0888 PF02875 Mur ligase family, glutamate ligase domain XCR_0888 PF01225 Mur ligase family, catalytic domain XCR_0888 PF08245 Mur ligase middle domain XCR_0889 PF00953 Glycosyl transferase family 4 XCR_0890 PF01098 Cell cycle protein XCR_0891 PF03033 Glycosyltransferase family 28 N-terminal domain XCR_0891 PF04101 Glycosyltransferase family 28 C-terminal domain XCR_0892 PF08245 Mur ligase middle domain XCR_0892 PF01225 Mur ligase family, catalytic domain XCR_0892 PF02875 Mur ligase family, glutamate ligase domain XCR_0893 PF01820 D-ala D-ala ligase N-terminus XCR_0893 PF07478 D-ala D-ala ligase C-terminus XCR_0895 PF03799 Cell division protein FtsQ XCR_0895 PF08478 POTRA domain, FtsQ-type XCR_0896 PF02491 SHS2 domain inserted in FTSA XCR_0898 PF00091 Tubulin/FtsZ family, GTPase domain XCR_0898 PF12327 FtsZ family, C-terminal domain XCR_0899 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase XCR_0902 PF01476 LysM domain XCR_0902 PF08525 Opacity-associated protein A N-terminal motif XCR_0902 PF01551 Peptidase family M23 XCR_0903 PF07517 SecA DEAD-like domain XCR_0903 PF01043 SecA preprotein cross-linking domain XCR_0903 PF07516 SecA Wing and Scaffold domain XCR_0903 PF02810 SEC-C motif XCR_0906 PF00293 NUDIX domain XCR_0909 PF02219 Methylenetetrahydrofolate reductase XCR_0913 PF16197 Ketoacyl-synthetase C-terminal extension XCR_0913 PF14765 Polyketide synthase dehydratase XCR_0913 PF00698 Acyl transferase domain XCR_0913 PF00107 Zinc-binding dehydrogenase XCR_0913 PF00550 Phosphopantetheine attachment site XCR_0913 PF08659 KR domain XCR_0913 PF02801 Beta-ketoacyl synthase, C-terminal domain XCR_0913 PF08240 Alcohol dehydrogenase GroES-like domain XCR_0913 PF00109 Beta-ketoacyl synthase, N-terminal domain XCR_0916 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XCR_0920 PF00128 Alpha amylase, catalytic domain XCR_0927 PF05221 S-adenosyl-L-homocysteine hydrolase XCR_0927 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XCR_0930 PF00311 Phosphoenolpyruvate carboxylase XCR_0934 PF01389 OmpA-like transmembrane domain XCR_0934 PF00691 OmpA family XCR_0938 PF00328 Histidine phosphatase superfamily (branch 2) XCR_0939 PF02773 S-adenosylmethionine synthetase, C-terminal domain XCR_0939 PF00438 S-adenosylmethionine synthetase, N-terminal domain XCR_0939 PF02772 S-adenosylmethionine synthetase, central domain XCR_0941 PF01207 Dihydrouridine synthase (Dus) XCR_0942 PF00294 pfkB family carbohydrate kinase XCR_0942 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) XCR_0943 PF01773 Na+ dependent nucleoside transporter N-terminus XCR_0943 PF07662 Na+ dependent nucleoside transporter C-terminus XCR_0943 PF07670 Nucleoside recognition XCR_0945 PF00248 Aldo/keto reductase family XCR_0948 PF07715 TonB-dependent Receptor Plug Domain XCR_0948 PF00593 TonB dependent receptor XCR_0952 PF00528 Binding-protein-dependent transport system inner membrane component XCR_0953 PF00005 ABC transporter XCR_0955 PF02668 Taurine catabolism dioxygenase TauD, TfdA family XCR_0957 PF00005 ABC transporter XCR_0958 PF13472 GDSL-like Lipase/Acylhydrolase family XCR_0959 PF00072 Response regulator receiver domain XCR_0959 PF00486 Transcriptional regulatory protein, C terminal XCR_0960 PF00512 His Kinase A (phospho-acceptor) domain XCR_0960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_0960 PF08521 Two-component sensor kinase N-terminal XCR_0962 PF01219 Prokaryotic diacylglycerol kinase XCR_0966 PF01790 Prolipoprotein diacylglyceryl transferase XCR_0967 PF00303 Thymidylate synthase XCR_0968 PF00186 Dihydrofolate reductase XCR_0969 PF00149 Calcineurin-like phosphoesterase XCR_0970 PF04379 ApaG domain XCR_0971 PF00398 Ribosomal RNA adenine dimethylase XCR_0972 PF04166 Pyridoxal phosphate biosynthetic protein PdxA XCR_0973 PF09312 SurA N-terminal domain XCR_0973 PF00639 PPIC-type PPIASE domain XCR_0974 PF03968 OstA-like protein XCR_0974 PF04453 LPS transport system D XCR_0975 PF00850 Histone deacetylase domain XCR_0976 PF01923 Cobalamin adenosyltransferase XCR_0978 PF01494 FAD binding domain XCR_0979 PF01494 FAD binding domain XCR_0983 PF00392 Bacterial regulatory proteins, gntR family XCR_0983 PF07729 FCD domain XCR_0984 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XCR_0985 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit XCR_0985 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XCR_0986 PF03466 LysR substrate binding domain XCR_0986 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_0987 PF00501 AMP-binding enzyme XCR_0987 PF13193 AMP-binding enzyme C-terminal domain XCR_0989 PF00171 Aldehyde dehydrogenase family XCR_0990 PF00378 Enoyl-CoA hydratase/isomerase XCR_0994 PF08450 SMP-30/Gluconolactonase/LRE-like region XCR_0995 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XCR_0995 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XCR_0997 PF01728 FtsJ-like methyltransferase XCR_0997 PF18125 RlmM ferredoxin-like domain XCR_1001 PF00892 EamA-like transporter family XCR_1004 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain XCR_1004 PF00749 tRNA synthetases class I (E and Q), catalytic domain XCR_1007 PF00072 Response regulator receiver domain XCR_1007 PF00990 Diguanylate cyclase, GGDEF domain XCR_1008 PF00512 His Kinase A (phospho-acceptor) domain XCR_1008 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_1008 PF01627 Hpt domain XCR_1008 PF00672 HAMP domain XCR_1008 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XCR_1008 PF00072 Response regulator receiver domain XCR_1009 PF00072 Response regulator receiver domain XCR_1009 PF00196 Bacterial regulatory proteins, luxR family XCR_1011 PF01625 Peptide methionine sulfoxide reductase XCR_1015 PF00923 Transaldolase/Fructose-6-phosphate aldolase XCR_1016 PF01272 Transcription elongation factor, GreA/GreB, C-term XCR_1016 PF14760 Rnk N-terminus XCR_1017 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_1017 PF03466 LysR substrate binding domain XCR_1018 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCR_1018 PF13192 Thioredoxin domain XCR_1019 PF00578 AhpC/TSA family XCR_1019 PF10417 C-terminal domain of 1-Cys peroxiredoxin XCR_1022 PF17827 PrmC N-terminal domain XCR_1022 PF05175 Methyltransferase small domain XCR_1023 PF00561 alpha/beta hydrolase fold XCR_1025 PF00293 NUDIX domain XCR_1026 PF01612 3'-5' exonuclease XCR_1026 PF00476 DNA polymerase family A XCR_1026 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XCR_1026 PF01367 5'-3' exonuclease, C-terminal SAM fold XCR_1027 PF00881 Nitroreductase family XCR_1039 PF01063 Amino-transferase class IV XCR_1041 PF00082 Subtilase family XCR_1041 PF04151 Bacterial pre-peptidase C-terminal domain XCR_1042 PF00082 Subtilase family XCR_1042 PF04151 Bacterial pre-peptidase C-terminal domain XCR_1043 PF00082 Subtilase family XCR_1043 PF04151 Bacterial pre-peptidase C-terminal domain XCR_1044 PF04073 Aminoacyl-tRNA editing domain XCR_1046 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain XCR_1046 PF17189 Glycosyl hydrolase family 30 beta sandwich domain XCR_1048 PF03358 NADPH-dependent FMN reductase XCR_1049 PF03631 Virulence factor BrkB XCR_1050 PF08534 Redoxin XCR_1051 PF00708 Acylphosphatase XCR_1053 PF03976 Polyphosphate kinase 2 (PPK2) XCR_1055 PF00994 Probable molybdopterin binding domain XCR_1057 PF03462 PCRF domain XCR_1057 PF00472 RF-1 domain XCR_1058 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain XCR_1058 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain XCR_1058 PF01488 Shikimate / quinate 5-dehydrogenase XCR_1061 PF03550 Outer membrane lipoprotein LolB XCR_1062 PF00288 GHMP kinases N terminal domain XCR_1062 PF08544 GHMP kinases C terminal XCR_1064 PF14572 Phosphoribosyl synthetase-associated domain XCR_1064 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase XCR_1065 PF14693 Ribosomal protein TL5, C-terminal domain XCR_1065 PF01386 Ribosomal L25p family XCR_1066 PF01195 Peptidyl-tRNA hydrolase XCR_1067 PF06071 Protein of unknown function (DUF933) XCR_1067 PF01926 50S ribosome-binding GTPase XCR_1071 PF03143 Elongation factor Tu C-terminal domain XCR_1071 PF03144 Elongation factor Tu domain 2 XCR_1071 PF00009 Elongation factor Tu GTP binding domain XCR_1073 PF00584 SecE/Sec61-gamma subunits of protein translocation complex XCR_1074 PF02357 Transcription termination factor nusG XCR_1074 PF00467 KOW motif XCR_1076 PF03946 Ribosomal protein L11, N-terminal domain XCR_1076 PF00298 Ribosomal protein L11, RNA binding domain XCR_1077 PF00687 Ribosomal protein L1p/L10e family XCR_1078 PF00466 Ribosomal protein L10 XCR_1079 PF16320 Ribosomal protein L7/L12 dimerisation domain XCR_1079 PF00542 Ribosomal protein L7/L12 C-terminal domain XCR_1080 PF04560 RNA polymerase Rpb2, domain 7 XCR_1080 PF00562 RNA polymerase Rpb2, domain 6 XCR_1080 PF04565 RNA polymerase Rpb2, domain 3 XCR_1080 PF04563 RNA polymerase beta subunit XCR_1080 PF04561 RNA polymerase Rpb2, domain 2 XCR_1080 PF10385 RNA polymerase beta subunit external 1 domain XCR_1081 PF04997 RNA polymerase Rpb1, domain 1 XCR_1081 PF00623 RNA polymerase Rpb1, domain 2 XCR_1081 PF04983 RNA polymerase Rpb1, domain 3 XCR_1081 PF05000 RNA polymerase Rpb1, domain 4 XCR_1081 PF04998 RNA polymerase Rpb1, domain 5 XCR_1082 PF00164 Ribosomal protein S12/S23 XCR_1084 PF00177 Ribosomal protein S7p/S5e XCR_1085 PF03764 Elongation factor G, domain IV XCR_1085 PF00679 Elongation factor G C-terminus XCR_1085 PF14492 Elongation Factor G, domain II XCR_1085 PF00009 Elongation factor Tu GTP binding domain XCR_1085 PF03144 Elongation factor Tu domain 2 XCR_1086 PF03144 Elongation factor Tu domain 2 XCR_1086 PF00009 Elongation factor Tu GTP binding domain XCR_1086 PF03143 Elongation factor Tu C-terminal domain XCR_1087 PF00338 Ribosomal protein S10p/S20e XCR_1088 PF00297 Ribosomal protein L3 XCR_1089 PF00573 Ribosomal protein L4/L1 family XCR_1090 PF00276 Ribosomal protein L23 XCR_1091 PF00181 Ribosomal Proteins L2, RNA binding domain XCR_1091 PF03947 Ribosomal Proteins L2, C-terminal domain XCR_1092 PF00203 Ribosomal protein S19 XCR_1093 PF00237 Ribosomal protein L22p/L17e XCR_1094 PF07650 KH domain XCR_1094 PF00189 Ribosomal protein S3, C-terminal domain XCR_1095 PF00252 Ribosomal protein L16p/L10e XCR_1096 PF00831 Ribosomal L29 protein XCR_1097 PF00366 Ribosomal protein S17 XCR_1098 PF00238 Ribosomal protein L14p/L23e XCR_1099 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 XCR_1099 PF00467 KOW motif XCR_1100 PF00281 Ribosomal protein L5 XCR_1100 PF00673 ribosomal L5P family C-terminus XCR_1101 PF00253 Ribosomal protein S14p/S29e XCR_1102 PF00410 Ribosomal protein S8 XCR_1103 PF00347 Ribosomal protein L6 XCR_1104 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast XCR_1105 PF00333 Ribosomal protein S5, N-terminal domain XCR_1105 PF03719 Ribosomal protein S5, C-terminal domain XCR_1106 PF00327 Ribosomal protein L30p/L7e XCR_1107 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A XCR_1108 PF00344 SecY translocase XCR_1109 PF00416 Ribosomal protein S13/S18 XCR_1110 PF00411 Ribosomal protein S11 XCR_1111 PF00163 Ribosomal protein S4/S9 N-terminal domain XCR_1111 PF01479 S4 domain XCR_1112 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain XCR_1112 PF01000 RNA polymerase Rpb3/RpoA insert domain XCR_1112 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain XCR_1113 PF01196 Ribosomal protein L17 XCR_1114 PF02600 Disulfide bond formation protein DsbB XCR_1115 PF01474 Class-II DAHP synthetase family XCR_1117 PF01425 Amidase XCR_1120 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XCR_1121 PF00056 lactate/malate dehydrogenase, NAD binding domain XCR_1121 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain XCR_1122 PF02798 Glutathione S-transferase, N-terminal domain XCR_1122 PF00043 Glutathione S-transferase, C-terminal domain XCR_1127 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XCR_1127 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCR_1128 PF08240 Alcohol dehydrogenase GroES-like domain XCR_1128 PF00107 Zinc-binding dehydrogenase XCR_1129 PF00691 OmpA family XCR_1129 PF00223 Photosystem I psaA/psaB protein XCR_1131 PF00849 RNA pseudouridylate synthase XCR_1132 PF00155 Aminotransferase class I and II XCR_1135 PF00528 Binding-protein-dependent transport system inner membrane component XCR_1136 PF00528 Binding-protein-dependent transport system inner membrane component XCR_1137 PF00005 ABC transporter XCR_1137 PF12857 TOBE-like domain XCR_1139 PF08240 Alcohol dehydrogenase GroES-like domain XCR_1139 PF00107 Zinc-binding dehydrogenase XCR_1142 PF05506 Domain of unknown function (DUF756) XCR_1142 PF04185 Phosphoesterase family XCR_1143 PF00300 Histidine phosphatase superfamily (branch 1) XCR_1146 PF08245 Mur ligase middle domain XCR_1146 PF02875 Mur ligase family, glutamate ligase domain XCR_1149 PF00156 Phosphoribosyl transferase domain XCR_1150 PF04305 Protein of unknown function (DUF455) XCR_1153 PF00149 Calcineurin-like phosphoesterase XCR_1154 PF01569 PAP2 superfamily XCR_1155 PF13439 Glycosyltransferase Family 4 XCR_1155 PF00534 Glycosyl transferases group 1 XCR_1156 PF02541 Ppx/GppA phosphatase family XCR_1157 PF17941 Polyphosphate kinase C-terminal domain 1 XCR_1157 PF13089 Polyphosphate kinase N-terminal domain XCR_1157 PF02503 Polyphosphate kinase middle domain XCR_1157 PF13090 Polyphosphate kinase C-terminal domain 2 XCR_1158 PF00989 PAS fold XCR_1158 PF00512 His Kinase A (phospho-acceptor) domain XCR_1158 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_1158 PF11808 Phosphate regulon sensor protein PhoR XCR_1160 PF00072 Response regulator receiver domain XCR_1160 PF00486 Transcriptional regulatory protein, C terminal XCR_1161 PF13181 Tetratricopeptide repeat XCR_1161 PF01435 Peptidase family M48 XCR_1162 PF00462 Glutaredoxin XCR_1165 PF00180 Isocitrate/isopropylmalate dehydrogenase XCR_1173 PF05697 Bacterial trigger factor protein (TF) XCR_1173 PF05698 Bacterial trigger factor protein (TF) C-terminus XCR_1175 PF00574 Clp protease XCR_1176 PF06689 ClpX C4-type zinc finger XCR_1176 PF10431 C-terminal, D2-small domain, of ClpB protein XCR_1176 PF07724 AAA domain (Cdc48 subfamily) XCR_1177 PF00004 ATPase family associated with various cellular activities (AAA) XCR_1177 PF05362 Lon protease (S16) C-terminal proteolytic domain XCR_1177 PF02190 ATP-dependent protease La (LON) substrate-binding domain XCR_1178 PF00216 Bacterial DNA-binding protein XCR_1184 PF01476 LysM domain XCR_1184 PF05257 CHAP domain XCR_1185 PF00753 Metallo-beta-lactamase superfamily XCR_1185 PF16123 Hydroxyacylglutathione hydrolase C-terminus XCR_1187 PF00075 RNase H XCR_1188 PF00929 Exonuclease XCR_1192 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XCR_1194 PF00753 Metallo-beta-lactamase superfamily XCR_1194 PF12706 Beta-lactamase superfamily domain XCR_1195 PF06463 Molybdenum Cofactor Synthesis C XCR_1195 PF04055 Radical SAM superfamily XCR_1197 PF01967 MoaC family XCR_1198 PF02597 ThiS family XCR_1199 PF02391 MoaE protein XCR_1201 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding XCR_1201 PF12169 DNA polymerase III subunits gamma and tau domain III XCR_1201 PF12170 DNA polymerase III tau subunit V interacting with alpha XCR_1202 PF02575 YbaB/EbfC DNA-binding family XCR_1203 PF13662 Toprim domain XCR_1203 PF02132 RecR protein XCR_1204 PF01230 HIT domain XCR_1206 PF01841 Transglutaminase-like superfamily XCR_1206 PF11992 Domain of unknown function (DUF3488) XCR_1206 PF13559 Domain of unknown function (DUF4129) XCR_1208 PF07726 ATPase family associated with various cellular activities (AAA) XCR_1208 PF17863 AAA lid domain XCR_1210 PF00535 Glycosyl transferase family 2 XCR_1213 PF02545 Maf-like protein XCR_1214 PF02620 Large ribosomal RNA subunit accumulation protein YceD XCR_1215 PF01783 Ribosomal L32p protein family XCR_1216 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XCR_1216 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XCR_1217 PF00698 Acyl transferase domain XCR_1219 PF00550 Phosphopantetheine attachment site XCR_1220 PF02801 Beta-ketoacyl synthase, C-terminal domain XCR_1220 PF00109 Beta-ketoacyl synthase, N-terminal domain XCR_1221 PF00425 chorismate binding enzyme XCR_1221 PF04715 Anthranilate synthase component I, N terminal region XCR_1222 PF02618 YceG-like family XCR_1223 PF09115 DNA polymerase III, delta subunit, C terminal XCR_1229 PF02954 Bacterial regulatory protein, Fis family XCR_1229 PF00158 Sigma-54 interaction domain XCR_1229 PF06506 Propionate catabolism activator XCR_1231 PF00285 Citrate synthase, C-terminal domain XCR_1232 PF00330 Aconitase family (aconitate hydratase) XCR_1232 PF00694 Aconitase C-terminal domain XCR_1233 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH XCR_1235 PF04303 PrpF protein XCR_1236 PF07715 TonB-dependent Receptor Plug Domain XCR_1236 PF00593 TonB dependent receptor XCR_1246 PF00912 Transglycosylase XCR_1246 PF06832 Penicillin-Binding Protein C-terminus Family XCR_1246 PF00905 Penicillin binding protein transpeptidase domain XCR_1248 PF08534 Redoxin XCR_1250 PF00011 Hsp20/alpha crystallin family XCR_1251 PF01556 DnaJ C terminal domain XCR_1251 PF00226 DnaJ domain XCR_1252 PF00072 Response regulator receiver domain XCR_1254 PF01145 SPFH domain / Band 7 family XCR_1254 PF12221 Bacterial membrane protein N terminal XCR_1255 PF01145 SPFH domain / Band 7 family XCR_1257 PF00709 Adenylosuccinate synthetase XCR_1258 PF11838 ERAP1-like C-terminal domain XCR_1258 PF01433 Peptidase family M1 domain XCR_1264 PF00440 Bacterial regulatory proteins, tetR family XCR_1266 PF01609 Transposase DDE domain XCR_1266 PF05598 Transposase domain (DUF772) XCR_1274 PF02384 N-6 DNA Methylase XCR_1274 PF12161 HsdM N-terminal domain XCR_1276 PF06250 YhcG PDDEXK nuclease domain XCR_1276 PF17761 DUF1016 N-terminal domain XCR_1277 PF18766 SWI2/SNF2 ATPase XCR_1277 PF11867 Domain of unknown function (DUF3387) XCR_1277 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) XCR_1281 PF00300 Histidine phosphatase superfamily (branch 1) XCR_1281 PF13456 Reverse transcriptase-like XCR_1282 PF01256 Carbohydrate kinase XCR_1286 PF00723 Glycosyl hydrolases family 15 XCR_1289 PF17678 Glycosyl hydrolase family 92 N-terminal domain XCR_1289 PF07971 Glycosyl hydrolase family 92 XCR_1290 PF00106 short chain dehydrogenase XCR_1293 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCR_1297 PF17755 UvrA DNA-binding domain XCR_1298 PF14310 Fibronectin type III-like domain XCR_1298 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCR_1298 PF00933 Glycosyl hydrolase family 3 N terminal domain XCR_1299 PF08240 Alcohol dehydrogenase GroES-like domain XCR_1299 PF00107 Zinc-binding dehydrogenase XCR_1300 PF00440 Bacterial regulatory proteins, tetR family XCR_1306 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XCR_1306 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XCR_1307 PF03450 CO dehydrogenase flavoprotein C-terminal domain XCR_1307 PF00941 FAD binding domain in molybdopterin dehydrogenase XCR_1308 PF01799 [2Fe-2S] binding domain XCR_1308 PF10518 TAT (twin-arginine translocation) pathway signal sequence XCR_1308 PF00111 2Fe-2S iron-sulfur cluster binding domain XCR_1314 PF01726 LexA DNA binding domain XCR_1314 PF00717 Peptidase S24-like XCR_1318 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XCR_1318 PF14579 Helix-hairpin-helix motif XCR_1318 PF02811 PHP domain XCR_1318 PF07733 Bacterial DNA polymerase III alpha NTPase domain XCR_1320 PF03169 OPT oligopeptide transporter protein XCR_1324 PF00326 Prolyl oligopeptidase family XCR_1324 PF07676 WD40-like Beta Propeller Repeat XCR_1324 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XCR_1327 PF02311 AraC-like ligand binding domain XCR_1327 PF12833 Helix-turn-helix domain XCR_1329 PF00199 Catalase XCR_1329 PF06628 Catalase-related immune-responsive XCR_1329 PF18011 C-terminal domain found in long catalases XCR_1330 PF00248 Aldo/keto reductase family XCR_1334 PF02347 Glycine cleavage system P-protein XCR_1335 PF07690 Major Facilitator Superfamily XCR_1339 PF08019 Phosphoethanolamine transferase EptA/EptB XCR_1339 PF00884 Sulfatase XCR_1342 PF00072 Response regulator receiver domain XCR_1342 PF00486 Transcriptional regulatory protein, C terminal XCR_1343 PF00512 His Kinase A (phospho-acceptor) domain XCR_1343 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_1345 PF03776 Septum formation topological specificity factor MinE XCR_1346 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XCR_1347 PF03775 Septum formation inhibitor MinC, C-terminal domain XCR_1347 PF05209 Septum formation inhibitor MinC, N-terminal domain XCR_1349 PF07730 Histidine kinase XCR_1350 PF00196 Bacterial regulatory proteins, luxR family XCR_1350 PF00072 Response regulator receiver domain XCR_1356 PF00730 HhH-GPD superfamily base excision DNA repair protein XCR_1362 PF01370 NAD dependent epimerase/dehydratase family XCR_1362 PF02222 ATP-grasp domain XCR_1366 PF04376 Arginine-tRNA-protein transferase, N terminus XCR_1366 PF04377 Arginine-tRNA-protein transferase, C terminus XCR_1368 PF08281 Sigma-70, region 4 XCR_1368 PF04542 Sigma-70 region 2 XCR_1373 PF00378 Enoyl-CoA hydratase/isomerase XCR_1375 PF00005 ABC transporter XCR_1375 PF17760 UvrA interaction domain XCR_1375 PF17755 UvrA DNA-binding domain XCR_1377 PF00829 Ribosomal prokaryotic L21 protein XCR_1378 PF01016 Ribosomal L27 protein XCR_1379 PF01926 50S ribosome-binding GTPase XCR_1379 PF01018 GTP1/OBG XCR_1380 PF01649 Ribosomal protein S20 XCR_1381 PF03023 Lipid II flippase MurJ XCR_1383 PF01687 Riboflavin kinase XCR_1383 PF06574 FAD synthetase XCR_1384 PF08264 Anticodon-binding domain of tRNA XCR_1384 PF06827 Zinc finger found in FPG and IleRS XCR_1384 PF00133 tRNA synthetases class I (I, L, M and V) XCR_1385 PF01252 Signal peptidase (SPase) II XCR_1386 PF02401 LytB protein XCR_1388 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XCR_1388 PF06481 COX Aromatic Rich Motif XCR_1389 PF00115 Cytochrome C and Quinol oxidase polypeptide I XCR_1390 PF00510 Cytochrome c oxidase subunit III XCR_1392 PF03626 Prokaryotic Cytochrome C oxidase subunit IV XCR_1394 PF18073 Rubredoxin metal binding domain XCR_1395 PF05656 Protein of unknown function (DUF805) XCR_1398 PF12833 Helix-turn-helix domain XCR_1400 PF00183 Hsp90 protein XCR_1400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_1402 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XCR_1403 PF01740 STAS domain XCR_1403 PF08678 Rsbr N terminal XCR_1404 PF01740 STAS domain XCR_1405 PF13581 Histidine kinase-like ATPase domain XCR_1407 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_1407 PF00512 His Kinase A (phospho-acceptor) domain XCR_1407 PF17149 Periplasmic sensor domain found in signal transduction proteins XCR_1407 PF00072 Response regulator receiver domain XCR_1407 PF00672 HAMP domain XCR_1407 PF01627 Hpt domain XCR_1408 PF08448 PAS fold XCR_1408 PF00512 His Kinase A (phospho-acceptor) domain XCR_1408 PF13188 PAS domain XCR_1408 PF00072 Response regulator receiver domain XCR_1408 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_1409 PF04616 Glycosyl hydrolases family 43 XCR_1409 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XCR_1411 PF07715 TonB-dependent Receptor Plug Domain XCR_1411 PF00593 TonB dependent receptor XCR_1413 PF00085 Thioredoxin XCR_1414 PF07237 Protein of unknown function (DUF1428) XCR_1415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_1415 PF13492 GAF domain XCR_1415 PF00512 His Kinase A (phospho-acceptor) domain XCR_1415 PF02702 Osmosensitive K+ channel His kinase sensor domain XCR_1415 PF13493 Domain of unknown function (DUF4118) XCR_1416 PF01339 CheB methylesterase XCR_1417 PF03705 CheR methyltransferase, all-alpha domain XCR_1417 PF01739 CheR methyltransferase, SAM binding domain XCR_1418 PF01627 Hpt domain XCR_1418 PF00512 His Kinase A (phospho-acceptor) domain XCR_1418 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_1418 PF00672 HAMP domain XCR_1418 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XCR_1418 PF00072 Response regulator receiver domain XCR_1420 PF00072 Response regulator receiver domain XCR_1420 PF13426 PAS domain XCR_1420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_1421 PF00072 Response regulator receiver domain XCR_1426 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_1426 PF03466 LysR substrate binding domain XCR_1427 PF06964 Alpha-L-arabinofuranosidase C-terminal domain XCR_1428 PF01263 Aldose 1-epimerase XCR_1429 PF01578 Cytochrome C assembly protein XCR_1430 PF02881 SRP54-type protein, helical bundle domain XCR_1430 PF00448 SRP54-type protein, GTPase domain XCR_1430 PF02978 Signal peptide binding domain XCR_1432 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) XCR_1433 PF03060 Nitronate monooxygenase XCR_1435 PF00886 Ribosomal protein S16 XCR_1436 PF01782 RimM N-terminal domain XCR_1436 PF05239 PRC-barrel domain XCR_1437 PF01746 tRNA (Guanine-1)-methyltransferase XCR_1438 PF01245 Ribosomal protein L19 XCR_1441 PF01554 MatE XCR_1442 PF01479 S4 domain XCR_1443 PF00141 Peroxidase XCR_1446 PF05192 MutS domain III XCR_1446 PF05190 MutS family domain IV XCR_1446 PF00488 MutS domain V XCR_1446 PF05188 MutS domain II XCR_1446 PF01624 MutS domain I XCR_1450 PF03301 Tryptophan 2,3-dioxygenase XCR_1456 PF00155 Aminotransferase class I and II XCR_1459 PF05819 NolX protein XCR_1465 PF05598 Transposase domain (DUF772) XCR_1465 PF01609 Transposase DDE domain XCR_1471 PF03211 Pectate lyase XCR_1477 PF01313 Bacterial export proteins, family 3 XCR_1478 PF00813 FliP family XCR_1481 PF00771 FHIPEP family XCR_1482 PF01312 FlhB HrpN YscU SpaS Family XCR_1485 PF01514 Secretory protein of YscJ/FliF family XCR_1488 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCR_1488 PF02874 ATP synthase alpha/beta family, beta-barrel domain XCR_1488 PF18269 T3SS EscN ATPase C-terminal domain XCR_1494 PF01464 Transglycosylase SLT domain XCR_1501 PF05598 Transposase domain (DUF772) XCR_1501 PF01609 Transposase DDE domain XCR_1502 PF01609 Transposase DDE domain XCR_1502 PF05598 Transposase domain (DUF772) XCR_1505 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCR_1505 PF00933 Glycosyl hydrolase family 3 N terminal domain XCR_1505 PF14310 Fibronectin type III-like domain XCR_1508 PF02837 Glycosyl hydrolases family 2, sugar binding domain XCR_1508 PF16355 Domain of unknown function (DUF4982) XCR_1508 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XCR_1508 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XCR_1508 PF00703 Glycosyl hydrolases family 2 XCR_1509 PF07745 Glycosyl hydrolase family 53 XCR_1512 PF01381 Helix-turn-helix XCR_1512 PF06114 IrrE N-terminal-like domain XCR_1512 PF09856 Predicted transcriptional regulator (DUF2083) XCR_1513 PF00171 Aldehyde dehydrogenase family XCR_1514 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCR_1514 PF02770 Acyl-CoA dehydrogenase, middle domain XCR_1514 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCR_1515 PF00378 Enoyl-CoA hydratase/isomerase XCR_1516 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XCR_1516 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XCR_1516 PF00378 Enoyl-CoA hydratase/isomerase XCR_1517 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XCR_1517 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XCR_1518 PF01545 Cation efflux family XCR_1520 PF00378 Enoyl-CoA hydratase/isomerase XCR_1520 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XCR_1520 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XCR_1521 PF04542 Sigma-70 region 2 XCR_1521 PF08281 Sigma-70, region 4 XCR_1523 PF13180 PDZ domain XCR_1524 PF00679 Elongation factor G C-terminus XCR_1524 PF00009 Elongation factor Tu GTP binding domain XCR_1524 PF06421 GTP-binding protein LepA C-terminus XCR_1524 PF03144 Elongation factor Tu domain 2 XCR_1525 PF10502 Signal peptidase, peptidase S26 XCR_1527 PF00035 Double-stranded RNA binding motif XCR_1527 PF14622 Ribonuclease-III-like XCR_1528 PF07650 KH domain XCR_1528 PF01926 50S ribosome-binding GTPase XCR_1529 PF02565 Recombination protein O C terminal XCR_1529 PF11967 Recombination protein O N terminal XCR_1530 PF00486 Transcriptional regulatory protein, C terminal XCR_1530 PF00072 Response regulator receiver domain XCR_1532 PF05958 tRNA (Uracil-5-)-methyltransferase XCR_1535 PF01323 DSBA-like thioredoxin domain XCR_1537 PF04244 Deoxyribodipyrimidine photo-lyase-related protein XCR_1538 PF00933 Glycosyl hydrolase family 3 N terminal domain XCR_1540 PF01048 Phosphorylase superfamily XCR_1541 PF00313 'Cold-shock' DNA-binding domain XCR_1542 PF01494 FAD binding domain XCR_1544 PF00271 Helicase conserved C-terminal domain XCR_1544 PF08494 DEAD/H associated XCR_1544 PF00270 DEAD/DEAH box helicase XCR_1545 PF04679 ATP dependent DNA ligase C terminal region XCR_1545 PF04675 DNA ligase N terminus XCR_1545 PF01068 ATP dependent DNA ligase domain XCR_1547 PF04675 DNA ligase N terminus XCR_1547 PF01068 ATP dependent DNA ligase domain XCR_1547 PF04679 ATP dependent DNA ligase C terminal region XCR_1551 PF00990 Diguanylate cyclase, GGDEF domain XCR_1551 PF00072 Response regulator receiver domain XCR_1555 PF02803 Thiolase, C-terminal domain XCR_1555 PF00108 Thiolase, N-terminal domain XCR_1556 PF03797 Autotransporter beta-domain XCR_1556 PF12951 Passenger-associated-transport-repeat XCR_1556 PF00082 Subtilase family XCR_1557 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain XCR_1557 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XCR_1559 PF01863 Protein of unknown function DUF45 XCR_1560 PF07043 Protein of unknown function (DUF1328) XCR_1562 PF01258 Prokaryotic dksA/traR C4-type zinc finger XCR_1566 PF04542 Sigma-70 region 2 XCR_1566 PF08281 Sigma-70, region 4 XCR_1571 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCR_1574 PF08274 PhnA Zinc-Ribbon XCR_1574 PF03831 PhnA domain XCR_1578 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XCR_1579 PF07690 Major Facilitator Superfamily XCR_1586 PF09924 Uncharacterised conserved protein (DUF2156) XCR_1586 PF03706 Lysylphosphatidylglycerol synthase TM region XCR_1588 PF01042 Endoribonuclease L-PSP XCR_1599 PF04545 Sigma-70, region 4 XCR_1599 PF04542 Sigma-70 region 2 XCR_1602 PF04060 Putative Fe-S cluster XCR_1604 PF01588 Putative tRNA binding domain XCR_1604 PF09334 tRNA synthetases class I (M) XCR_1605 PF07715 TonB-dependent Receptor Plug Domain XCR_1605 PF00593 TonB dependent receptor XCR_1607 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XCR_1609 PF00324 Amino acid permease XCR_1610 PF02574 Homocysteine S-methyltransferase XCR_1612 PF02592 Putative vitamin uptake transporter XCR_1617 PF03551 Transcriptional regulator PadR-like family XCR_1624 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit XCR_1625 PF14579 Helix-hairpin-helix motif XCR_1625 PF01336 OB-fold nucleic acid binding domain XCR_1625 PF02811 PHP domain XCR_1625 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XCR_1625 PF07733 Bacterial DNA polymerase III alpha NTPase domain XCR_1626 PF01351 Ribonuclease HII XCR_1627 PF02684 Lipid-A-disaccharide synthetase XCR_1628 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 XCR_1628 PF00132 Bacterial transferase hexapeptide (six repeats) XCR_1629 PF07977 FabA-like domain XCR_1630 PF00132 Bacterial transferase hexapeptide (six repeats) XCR_1630 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD XCR_1632 PF07244 Surface antigen variable number repeat XCR_1632 PF01103 Surface antigen XCR_1633 PF02163 Peptidase family M50 XCR_1633 PF17820 PDZ domain XCR_1634 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain XCR_1634 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase XCR_1634 PF13288 DXP reductoisomerase C-terminal domain XCR_1636 PF01255 Putative undecaprenyl diphosphate synthase XCR_1637 PF01765 Ribosome recycling factor XCR_1638 PF00696 Amino acid kinase family XCR_1639 PF00072 Response regulator receiver domain XCR_1639 PF00990 Diguanylate cyclase, GGDEF domain XCR_1641 PF00889 Elongation factor TS XCR_1642 PF00318 Ribosomal protein S2 XCR_1649 PF00557 Metallopeptidase family M24 XCR_1650 PF08335 GlnD PII-uridylyltransferase XCR_1650 PF01966 HD domain XCR_1650 PF01909 Nucleotidyltransferase domain XCR_1651 PF00132 Bacterial transferase hexapeptide (six repeats) XCR_1651 PF14602 Hexapeptide repeat of succinyl-transferase XCR_1651 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal XCR_1653 PF03960 ArsC family XCR_1655 PF01546 Peptidase family M20/M25/M40 XCR_1655 PF07687 Peptidase dimerisation domain XCR_1658 PF00733 Asparagine synthase XCR_1658 PF13537 Glutamine amidotransferase domain XCR_1660 PF07715 TonB-dependent Receptor Plug Domain XCR_1660 PF00593 TonB dependent receptor XCR_1661 PF01804 Penicillin amidase XCR_1662 PF00210 Ferritin-like domain XCR_1663 PF05724 Thiopurine S-methyltransferase (TPMT) XCR_1665 PF00521 DNA gyrase/topoisomerase IV, subunit A XCR_1665 PF03989 DNA gyrase C-terminal domain, beta-propeller XCR_1668 PF02321 Outer membrane efflux protein XCR_1669 PF00529 HlyD membrane-fusion protein of T1SS XCR_1669 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCR_1670 PF07690 Major Facilitator Superfamily XCR_1675 PF00933 Glycosyl hydrolase family 3 N terminal domain XCR_1675 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCR_1675 PF14310 Fibronectin type III-like domain XCR_1677 PF00854 POT family XCR_1682 PF12802 MarR family XCR_1683 PF01432 Peptidase family M3 XCR_1685 PF00255 Glutathione peroxidase XCR_1686 PF00175 Oxidoreductase NAD-binding domain XCR_1686 PF00970 Oxidoreductase FAD-binding domain XCR_1687 PF00005 ABC transporter XCR_1688 PF05681 Fumarate hydratase (Fumerase) XCR_1688 PF05683 Fumarase C-terminus XCR_1691 PF00484 Carbonic anhydrase XCR_1692 PF02253 Phospholipase A1 XCR_1694 PF00313 'Cold-shock' DNA-binding domain XCR_1697 PF00899 ThiF family XCR_1698 PF01026 TatD related DNase XCR_1701 PF02770 Acyl-CoA dehydrogenase, middle domain XCR_1701 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCR_1701 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCR_1703 PF00043 Glutathione S-transferase, C-terminal domain XCR_1703 PF02798 Glutathione S-transferase, N-terminal domain XCR_1704 PF13537 Glutamine amidotransferase domain XCR_1704 PF00733 Asparagine synthase XCR_1705 PF03358 NADPH-dependent FMN reductase XCR_1706 PF00772 DnaB-like helicase N terminal domain XCR_1706 PF03796 DnaB-like helicase C terminal domain XCR_1707 PF00875 DNA photolyase XCR_1707 PF03441 FAD binding domain of DNA photolyase XCR_1708 PF00691 OmpA family XCR_1708 PF05736 OprF membrane domain XCR_1709 PF03466 LysR substrate binding domain XCR_1709 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_1712 PF00529 HlyD membrane-fusion protein of T1SS XCR_1712 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCR_1713 PF00873 AcrB/AcrD/AcrF family XCR_1715 PF02321 Outer membrane efflux protein XCR_1716 PF00990 Diguanylate cyclase, GGDEF domain XCR_1716 PF08448 PAS fold XCR_1718 PF00990 Diguanylate cyclase, GGDEF domain XCR_1721 PF13683 Integrase core domain XCR_1721 PF13276 HTH-like domain XCR_1722 PF01527 Transposase XCR_1725 PF00082 Subtilase family XCR_1726 PF01668 SmpB protein XCR_1728 PF03658 RnfH family Ubiquitin XCR_1730 PF04355 SmpA / OmlA family XCR_1731 PF01475 Ferric uptake regulator family XCR_1734 PF02463 RecF/RecN/SMC N terminal domain XCR_1735 PF01628 HrcA protein C terminal domain XCR_1735 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding XCR_1736 PF01025 GrpE XCR_1737 PF00012 Hsp70 protein XCR_1738 PF00684 DnaJ central domain XCR_1738 PF01556 DnaJ C terminal domain XCR_1738 PF00226 DnaJ domain XCR_1739 PF08543 Phosphomethylpyrimidine kinase XCR_1744 PF00005 ABC transporter XCR_1744 PF00664 ABC transporter transmembrane region XCR_1744 PF03412 Peptidase C39 family XCR_1745 PF03466 LysR substrate binding domain XCR_1745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_1746 PF00005 ABC transporter XCR_1746 PF00664 ABC transporter transmembrane region XCR_1747 PF01205 Uncharacterized protein family UPF0029 XCR_1748 PF03641 Possible lysine decarboxylase XCR_1749 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XCR_1749 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCR_1750 PF02817 e3 binding domain XCR_1750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XCR_1750 PF00364 Biotin-requiring enzyme XCR_1752 PF00676 Dehydrogenase E1 component XCR_1752 PF16870 2-oxoglutarate dehydrogenase C-terminal XCR_1752 PF02779 Transketolase, pyrimidine binding domain XCR_1752 PF16078 2-oxoglutarate dehydrogenase N-terminus XCR_1754 PF08007 Cupin superfamily protein XCR_1757 PF00206 Lyase XCR_1757 PF08328 Adenylosuccinate lyase C-terminal XCR_1759 PF03471 Transporter associated domain XCR_1759 PF01595 Cyclin M transmembrane N-terminal domain XCR_1759 PF00571 CBS domain XCR_1760 PF00206 Lyase XCR_1760 PF10415 Fumarase C C-terminus XCR_1766 PF00005 ABC transporter XCR_1767 PF00392 Bacterial regulatory proteins, gntR family XCR_1768 PF00255 Glutathione peroxidase XCR_1770 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XCR_1770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCR_1771 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XCR_1771 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XCR_1771 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XCR_1772 PF04102 SlyX XCR_1775 PF00356 Bacterial regulatory proteins, lacI family XCR_1776 PF07690 Major Facilitator Superfamily XCR_1777 PF00294 pfkB family carbohydrate kinase XCR_1779 PF02574 Homocysteine S-methyltransferase XCR_1779 PF02310 B12 binding domain XCR_1779 PF02607 B12 binding domain XCR_1779 PF02965 Vitamin B12 dependent methionine synthase, activation domain XCR_1779 PF00809 Pterin binding enzyme XCR_1780 PF02574 Homocysteine S-methyltransferase XCR_1780 PF00809 Pterin binding enzyme XCR_1781 PF01209 ubiE/COQ5 methyltransferase family XCR_1782 PF02770 Acyl-CoA dehydrogenase, middle domain XCR_1782 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCR_1782 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCR_1788 PF17876 Cold shock domain XCR_1788 PF08461 Ribonuclease R winged-helix domain XCR_1788 PF08206 Ribonuclease B OB domain XCR_1788 PF00773 RNB domain XCR_1788 PF00575 S1 RNA binding domain XCR_1791 PF00588 SpoU rRNA Methylase family XCR_1791 PF08032 RNA 2'-O ribose methyltransferase substrate binding XCR_1793 PF00990 Diguanylate cyclase, GGDEF domain XCR_1793 PF07694 5TMR of 5TMR-LYT XCR_1794 PF00929 Exonuclease XCR_1796 PF01895 PhoU domain XCR_1797 PF00005 ABC transporter XCR_1798 PF00528 Binding-protein-dependent transport system inner membrane component XCR_1799 PF00528 Binding-protein-dependent transport system inner membrane component XCR_1800 PF12849 PBP superfamily domain XCR_1801 PF12849 PBP superfamily domain XCR_1804 PF00484 Carbonic anhydrase XCR_1805 PF00916 Sulfate permease family XCR_1805 PF01740 STAS domain XCR_1806 PF00633 Helix-hairpin-helix motif XCR_1806 PF10576 Iron-sulfur binding domain of endonuclease III XCR_1806 PF00730 HhH-GPD superfamily base excision DNA repair protein XCR_1808 PF00378 Enoyl-CoA hydratase/isomerase XCR_1809 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCR_1809 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XCR_1810 PF00293 NUDIX domain XCR_1811 PF00581 Rhodanese-like domain XCR_1821 PF12848 ABC transporter XCR_1821 PF16326 ABC transporter C-terminal domain XCR_1821 PF00005 ABC transporter XCR_1822 PF10672 S-adenosylmethionine-dependent methyltransferase XCR_1822 PF02926 THUMP domain XCR_1822 PF01170 Putative RNA methylase family UPF0020 XCR_1824 PF01513 ATP-NAD kinase XCR_1829 PF00929 Exonuclease XCR_1829 PF08411 Exonuclease C-terminal XCR_1830 PF01494 FAD binding domain XCR_1831 PF00266 Aminotransferase class-V XCR_1834 PF06052 3-hydroxyanthranilic acid dioxygenase XCR_1835 PF00484 Carbonic anhydrase XCR_1840 PF01336 OB-fold nucleic acid binding domain XCR_1840 PF00152 tRNA synthetases class II (D, K and N) XCR_1841 PF01521 Iron-sulphur cluster biosynthesis XCR_1842 PF01250 Ribosomal protein S6 XCR_1843 PF01084 Ribosomal protein S18 XCR_1844 PF03948 Ribosomal protein L9, C-terminal domain XCR_1844 PF01281 Ribosomal protein L9, N-terminal domain XCR_1846 PF02463 RecF/RecN/SMC N terminal domain XCR_1847 PF04354 ZipA, C-terminal FtsZ-binding domain XCR_1848 PF00155 Aminotransferase class I and II XCR_1849 PF03119 NAD-dependent DNA ligase C4 zinc finger domain XCR_1849 PF00533 BRCA1 C Terminus (BRCT) domain XCR_1849 PF12826 Helix-hairpin-helix motif XCR_1849 PF01653 NAD-dependent DNA ligase adenylation domain XCR_1849 PF03120 NAD-dependent DNA ligase OB-fold domain XCR_1850 PF00152 tRNA synthetases class II (D, K and N) XCR_1852 PF01008 Initiation factor 2 subunit family XCR_1853 PF03989 DNA gyrase C-terminal domain, beta-propeller XCR_1853 PF00521 DNA gyrase/topoisomerase IV, subunit A XCR_1854 PF13360 PQQ-like domain XCR_1856 PF17391 Urocanase N-terminal domain XCR_1856 PF01175 Urocanase Rossmann-like domain XCR_1856 PF17392 Urocanase C-terminal domain XCR_1858 PF00221 Aromatic amino acid lyase XCR_1859 PF01979 Amidohydrolase family XCR_1861 PF00392 Bacterial regulatory proteins, gntR family XCR_1861 PF07702 UTRA domain XCR_1867 PF00174 Oxidoreductase molybdopterin binding domain XCR_1868 PF00266 Aminotransferase class-V XCR_1869 PF01817 Chorismate mutase type II XCR_1869 PF01842 ACT domain XCR_1869 PF00800 Prephenate dehydratase XCR_1871 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XCR_1873 PF02403 Seryl-tRNA synthetase N-terminal domain XCR_1873 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XCR_1874 PF03466 LysR substrate binding domain XCR_1874 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_1876 PF01494 FAD binding domain XCR_1888 PF00512 His Kinase A (phospho-acceptor) domain XCR_1888 PF08448 PAS fold XCR_1888 PF00072 Response regulator receiver domain XCR_1888 PF13188 PAS domain XCR_1888 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_1889 PF00512 His Kinase A (phospho-acceptor) domain XCR_1889 PF00072 Response regulator receiver domain XCR_1889 PF13188 PAS domain XCR_1889 PF08448 PAS fold XCR_1889 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_1890 PF06745 KaiC XCR_1891 PF00072 Response regulator receiver domain XCR_1891 PF13426 PAS domain XCR_1891 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_1893 PF03918 Cytochrome C biogenesis protein XCR_1894 PF08534 Redoxin XCR_1895 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XCR_1895 PF01578 Cytochrome C assembly protein XCR_1896 PF03100 CcmE XCR_1898 PF01578 Cytochrome C assembly protein XCR_1899 PF00082 Subtilase family XCR_1901 PF04542 Sigma-70 region 2 XCR_1901 PF08281 Sigma-70, region 4 XCR_1903 PF00034 Cytochrome c XCR_1905 PF01292 Prokaryotic cytochrome b561 XCR_1906 PF05523 WxcM-like, C-terminal XCR_1907 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XCR_1908 PF01943 Polysaccharide biosynthesis protein XCR_1909 PF00535 Glycosyl transferase family 2 XCR_1913 PF13382 Adenine deaminase C-terminal domain XCR_1913 PF01979 Amidohydrolase family XCR_1915 PF00534 Glycosyl transferases group 1 XCR_1915 PF13439 Glycosyltransferase Family 4 XCR_1916 PF13579 Glycosyl transferase 4-like domain XCR_1916 PF00534 Glycosyl transferases group 1 XCR_1920 PF00664 ABC transporter transmembrane region XCR_1920 PF00005 ABC transporter XCR_1921 PF07690 Major Facilitator Superfamily XCR_1922 PF00296 Luciferase-like monooxygenase XCR_1925 PF01595 Cyclin M transmembrane N-terminal domain XCR_1925 PF03471 Transporter associated domain XCR_1925 PF00571 CBS domain XCR_1927 PF01384 Phosphate transporter family XCR_1930 PF02611 CDP-diacylglycerol pyrophosphatase XCR_1931 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_1931 PF01751 Toprim domain XCR_1931 PF00986 DNA gyrase B subunit, carboxyl terminus XCR_1931 PF00204 DNA gyrase B XCR_1933 PF06418 CTP synthase N-terminus XCR_1933 PF00117 Glutamine amidotransferase class-I XCR_1934 PF00793 DAHP synthetase I family XCR_1936 PF03952 Enolase, N-terminal domain XCR_1936 PF00113 Enolase, C-terminal TIM barrel domain XCR_1937 PF04977 Septum formation initiator XCR_1938 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase XCR_1939 PF02542 YgbB family XCR_1940 PF01142 tRNA pseudouridine synthase D (TruD) XCR_1941 PF01713 Smr domain XCR_1942 PF01975 Survival protein SurE XCR_1944 PF09335 SNARE associated Golgi protein XCR_1945 PF01476 LysM domain XCR_1945 PF01551 Peptidase family M23 XCR_1946 PF04430 Protein of unknown function (DUF498/DUF598) XCR_1947 PF01985 CRS1 / YhbY (CRM) domain XCR_1948 PF01728 FtsJ-like methyltransferase XCR_1949 PF17862 AAA+ lid domain XCR_1949 PF06480 FtsH Extracellular XCR_1949 PF00004 ATPase family associated with various cellular activities (AAA) XCR_1949 PF01434 Peptidase family M41 XCR_1950 PF00809 Pterin binding enzyme XCR_1952 PF17209 Hfq protein XCR_1953 PF01926 50S ribosome-binding GTPase XCR_1953 PF13167 GTP-binding GTPase N-terminal XCR_1953 PF16360 GTP-binding GTPase Middle Region XCR_1954 PF02464 Competence-damaged protein XCR_1955 PF07715 TonB-dependent Receptor Plug Domain XCR_1955 PF00593 TonB dependent receptor XCR_1957 PF03109 ABC1 family XCR_1958 PF01726 LexA DNA binding domain XCR_1958 PF00717 Peptidase S24-like XCR_1959 PF00154 recA bacterial DNA recombination protein XCR_1960 PF02631 RecX family XCR_1962 PF01411 tRNA synthetases class II (A) XCR_1962 PF02272 DHHA1 domain XCR_1962 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XCR_1963 PF02599 Global regulator protein family XCR_1967 PF08447 PAS fold XCR_1967 PF13426 PAS domain XCR_1967 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_1970 PF03466 LysR substrate binding domain XCR_1970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_1975 PF02581 Thiamine monophosphate synthase XCR_1975 PF08543 Phosphomethylpyrimidine kinase XCR_1977 PF13638 PIN domain XCR_1977 PF02562 PhoH-like protein XCR_1978 PF00578 AhpC/TSA family XCR_1981 PF00701 Dihydrodipicolinate synthetase family XCR_1983 PF11953 Domain of unknown function (DUF3470) XCR_1983 PF00037 4Fe-4S binding domain XCR_1984 PF05035 2-keto-3-deoxy-galactonokinase XCR_1985 PF08450 SMP-30/Gluconolactonase/LRE-like region XCR_1986 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XCR_1986 PF13378 Enolase C-terminal domain-like XCR_1987 PF01081 KDPG and KHG aldolase XCR_1989 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_1989 PF03466 LysR substrate binding domain XCR_1992 PF03442 Carbohydrate binding domain X2 XCR_1992 PF00942 Cellulose binding domain XCR_1995 PF01055 Glycosyl hydrolases family 31 XCR_1995 PF16338 Domain of unknown function (DUF4968) XCR_1995 PF17137 Domain of unknown function (DUF5110) XCR_1997 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XCR_1997 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XCR_1999 PF00083 Sugar (and other) transporter XCR_2002 PF01520 N-acetylmuramoyl-L-alanine amidase XCR_2003 PF02649 Type I GTP cyclohydrolase folE2 XCR_2007 PF12627 Probable RNA and SrmB- binding site of polymerase A XCR_2007 PF01743 Poly A polymerase head domain XCR_2007 PF12626 Polymerase A arginine-rich C-terminus XCR_2008 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XCR_2009 PF02548 Ketopantoate hydroxymethyltransferase XCR_2010 PF02569 Pantoate-beta-alanine ligase XCR_2012 PF02261 Aspartate decarboxylase XCR_2013 PF00342 Phosphoglucose isomerase XCR_2017 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCR_2017 PF00933 Glycosyl hydrolase family 3 N terminal domain XCR_2017 PF14310 Fibronectin type III-like domain XCR_2019 PF00474 Sodium:solute symporter family XCR_2020 PF00990 Diguanylate cyclase, GGDEF domain XCR_2020 PF00563 EAL domain XCR_2020 PF01590 GAF domain XCR_2020 PF00360 Phytochrome region XCR_2021 PF02013 Cellulose or protein binding domain XCR_2021 PF00150 Cellulase (glycosyl hydrolase family 5) XCR_2022 PF00072 Response regulator receiver domain XCR_2024 PF04551 GcpE protein XCR_2025 PF01569 PAP2 superfamily XCR_2026 PF07690 Major Facilitator Superfamily XCR_2027 PF01177 Asp/Glu/Hydantoin racemase XCR_2028 PF00892 EamA-like transporter family XCR_2029 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain XCR_2029 PF01565 FAD binding domain XCR_2030 PF01180 Dihydroorotate dehydrogenase XCR_2033 PF00171 Aldehyde dehydrogenase family XCR_2037 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB XCR_2037 PF17287 POTRA domain XCR_2037 PF08479 POTRA domain, ShlB-type XCR_2038 PF13332 Hemagglutinin repeat XCR_2038 PF05594 Haemagluttinin repeat XCR_2038 PF13018 Extended Signal Peptide of Type V secretion system XCR_2038 PF05860 haemagglutination activity domain XCR_2038 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain XCR_2042 PF13276 HTH-like domain XCR_2042 PF13683 Integrase core domain XCR_2043 PF01527 Transposase XCR_2044 PF13332 Hemagglutinin repeat XCR_2044 PF04829 Pre-toxin domain with VENN motif XCR_2044 PF05594 Haemagluttinin repeat XCR_2046 PF01527 Transposase XCR_2047 PF13683 Integrase core domain XCR_2047 PF13276 HTH-like domain XCR_2049 PF03073 TspO/MBR family XCR_2051 PF00696 Amino acid kinase family XCR_2051 PF01842 ACT domain XCR_2051 PF13840 ACT domain XCR_2051 PF03447 Homoserine dehydrogenase, NAD binding domain XCR_2051 PF00742 Homoserine dehydrogenase XCR_2052 PF08544 GHMP kinases C terminal XCR_2052 PF00288 GHMP kinases N terminal domain XCR_2054 PF14821 Threonine synthase N terminus XCR_2054 PF00291 Pyridoxal-phosphate dependent enzyme XCR_2056 PF13545 Crp-like helix-turn-helix domain XCR_2056 PF00027 Cyclic nucleotide-binding domain XCR_2057 PF13393 Histidyl-tRNA synthetase XCR_2057 PF03129 Anticodon binding domain XCR_2059 PF01634 ATP phosphoribosyltransferase XCR_2059 PF08029 HisG, C-terminal domain XCR_2060 PF00815 Histidinol dehydrogenase XCR_2061 PF00155 Aminotransferase class I and II XCR_2062 PF00475 Imidazoleglycerol-phosphate dehydratase XCR_2063 PF00117 Glutamine amidotransferase class-I XCR_2064 PF00977 Histidine biosynthesis protein XCR_2065 PF00977 Histidine biosynthesis protein XCR_2066 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase XCR_2066 PF01502 Phosphoribosyl-AMP cyclohydrolase XCR_2070 PF03079 ARD/ARD' family XCR_2071 PF00596 Class II Aldolase and Adducin N-terminal domain XCR_2073 PF13520 Amino acid permease XCR_2074 PF13520 Amino acid permease XCR_2077 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XCR_2077 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XCR_2079 PF02913 FAD linked oxidases, C-terminal domain XCR_2079 PF01565 FAD binding domain XCR_2083 PF09285 Elongation factor P, C-terminal XCR_2083 PF08207 Elongation factor P (EF-P) KOW-like domain XCR_2083 PF01132 Elongation factor P (EF-P) OB domain XCR_2084 PF00106 short chain dehydrogenase XCR_2085 PF00682 HMGL-like XCR_2086 PF00378 Enoyl-CoA hydratase/isomerase XCR_2088 PF02421 Ferrous iron transport protein B XCR_2088 PF07664 Ferrous iron transport protein B C terminus XCR_2088 PF07670 Nucleoside recognition XCR_2091 PF00155 Aminotransferase class I and II XCR_2092 PF03473 MOSC domain XCR_2092 PF03475 3-alpha domain XCR_2093 PF01113 Dihydrodipicolinate reductase, N-terminus XCR_2093 PF05173 Dihydrodipicolinate reductase, C-terminus XCR_2094 PF00117 Glutamine amidotransferase class-I XCR_2094 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain XCR_2096 PF02142 MGS-like domain XCR_2096 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XCR_2096 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XCR_2097 PF03449 Transcription elongation factor, N-terminal XCR_2097 PF01272 Transcription elongation factor, GreA/GreB, C-term XCR_2099 PF01368 DHH family XCR_2099 PF02272 DHHA1 domain XCR_2099 PF17768 RecJ OB domain XCR_2104 PF00072 Response regulator receiver domain XCR_2104 PF04397 LytTr DNA-binding domain XCR_2105 PF00472 RF-1 domain XCR_2105 PF03462 PCRF domain XCR_2106 PF00152 tRNA synthetases class II (D, K and N) XCR_2106 PF01336 OB-fold nucleic acid binding domain XCR_2107 PF00072 Response regulator receiver domain XCR_2108 PF00072 Response regulator receiver domain XCR_2108 PF01627 Hpt domain XCR_2108 PF00512 His Kinase A (phospho-acceptor) domain XCR_2108 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_2109 PF00072 Response regulator receiver domain XCR_2109 PF01627 Hpt domain XCR_2109 PF00512 His Kinase A (phospho-acceptor) domain XCR_2109 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_2110 PF00378 Enoyl-CoA hydratase/isomerase XCR_2111 PF00501 AMP-binding enzyme XCR_2111 PF13193 AMP-binding enzyme C-terminal domain XCR_2113 PF00694 Aconitase C-terminal domain XCR_2113 PF00330 Aconitase family (aconitate hydratase) XCR_2116 PF00330 Aconitase family (aconitate hydratase) XCR_2116 PF06434 Aconitate hydratase 2 N-terminus XCR_2116 PF11791 Aconitate B N-terminal domain XCR_2117 PF00561 alpha/beta hydrolase fold XCR_2118 PF00563 EAL domain XCR_2118 PF03707 Bacterial signalling protein N terminal repeat XCR_2118 PF00990 Diguanylate cyclase, GGDEF domain XCR_2119 PF01339 CheB methylesterase XCR_2119 PF00072 Response regulator receiver domain XCR_2120 PF03975 CheD chemotactic sensory transduction XCR_2121 PF03705 CheR methyltransferase, all-alpha domain XCR_2121 PF01739 CheR methyltransferase, SAM binding domain XCR_2122 PF00672 HAMP domain XCR_2122 PF02203 Tar ligand binding domain homologue XCR_2122 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_2125 PF01584 CheW-like domain XCR_2126 PF07317 Flagellar regulator YcgR XCR_2126 PF07238 PilZ domain XCR_2128 PF02203 Tar ligand binding domain homologue XCR_2128 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_2128 PF00672 HAMP domain XCR_2129 PF02203 Tar ligand binding domain homologue XCR_2129 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_2129 PF00672 HAMP domain XCR_2131 PF02203 Tar ligand binding domain homologue XCR_2131 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_2131 PF00672 HAMP domain XCR_2132 PF00672 HAMP domain XCR_2132 PF02203 Tar ligand binding domain homologue XCR_2132 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_2133 PF00672 HAMP domain XCR_2133 PF02203 Tar ligand binding domain homologue XCR_2133 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_2134 PF00672 HAMP domain XCR_2134 PF02203 Tar ligand binding domain homologue XCR_2134 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_2135 PF02203 Tar ligand binding domain homologue XCR_2135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_2135 PF00672 HAMP domain XCR_2138 PF02203 Tar ligand binding domain homologue XCR_2138 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_2138 PF00672 HAMP domain XCR_2140 PF02895 Signal transducing histidine kinase, homodimeric domain XCR_2140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_2140 PF09078 CheY binding XCR_2140 PF01584 CheW-like domain XCR_2140 PF01627 Hpt domain XCR_2141 PF00072 Response regulator receiver domain XCR_2143 PF01584 CheW-like domain XCR_2144 PF13614 AAA domain XCR_2145 PF00691 OmpA family XCR_2145 PF13677 Membrane MotB of proton-channel complex MotA/MotB XCR_2146 PF01618 MotA/TolQ/ExbB proton channel family XCR_2162 PF01527 Transposase XCR_2163 PF13276 HTH-like domain XCR_2163 PF13683 Integrase core domain XCR_2168 PF01627 Hpt domain XCR_2168 PF01584 CheW-like domain XCR_2168 PF02895 Signal transducing histidine kinase, homodimeric domain XCR_2168 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_2168 PF07194 P2 response regulator binding domain XCR_2169 PF04344 Chemotaxis phosphatase, CheZ XCR_2170 PF00072 Response regulator receiver domain XCR_2171 PF04539 Sigma-70 region 3 XCR_2171 PF04545 Sigma-70, region 4 XCR_2171 PF04542 Sigma-70 region 2 XCR_2172 PF10609 NUBPL iron-transfer P-loop NTPase XCR_2173 PF00448 SRP54-type protein, GTPase domain XCR_2176 PF00771 FHIPEP family XCR_2177 PF01312 FlhB HrpN YscU SpaS Family XCR_2178 PF03707 Bacterial signalling protein N terminal repeat XCR_2178 PF00990 Diguanylate cyclase, GGDEF domain XCR_2178 PF00563 EAL domain XCR_2179 PF03707 Bacterial signalling protein N terminal repeat XCR_2179 PF00563 EAL domain XCR_2179 PF00990 Diguanylate cyclase, GGDEF domain XCR_2180 PF00563 EAL domain XCR_2180 PF00990 Diguanylate cyclase, GGDEF domain XCR_2180 PF03707 Bacterial signalling protein N terminal repeat XCR_2180 PF13188 PAS domain XCR_2181 PF01311 Bacterial export proteins, family 1 XCR_2182 PF01313 Bacterial export proteins, family 3 XCR_2183 PF00813 FliP family XCR_2184 PF04347 Flagellar biosynthesis protein, FliO XCR_2185 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XCR_2186 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XCR_2186 PF02154 Flagellar motor switch protein FliM XCR_2191 PF18269 T3SS EscN ATPase C-terminal domain XCR_2191 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCR_2193 PF14842 FliG N-terminal domain XCR_2193 PF01706 FliG C-terminal domain XCR_2193 PF14841 FliG middle domain XCR_2194 PF08345 Flagellar M-ring protein C-terminal XCR_2194 PF01514 Secretory protein of YscJ/FliF family XCR_2195 PF02049 Flagellar hook-basal body complex protein FliE XCR_2196 PF00535 Glycosyl transferase family 2 XCR_2196 PF00534 Glycosyl transferases group 1 XCR_2199 PF02348 Cytidylyltransferase XCR_2208 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XCR_2208 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XCR_2210 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XCR_2211 PF02954 Bacterial regulatory protein, Fis family XCR_2211 PF00072 Response regulator receiver domain XCR_2211 PF00158 Sigma-54 interaction domain XCR_2212 PF01339 CheB methylesterase XCR_2212 PF00072 Response regulator receiver domain XCR_2213 PF00309 Sigma-54 factor, Activator interacting domain (AID) XCR_2213 PF04963 Sigma-54 factor, core binding domain XCR_2213 PF04552 Sigma-54, DNA binding domain XCR_2214 PF00072 Response regulator receiver domain XCR_2214 PF00196 Bacterial regulatory proteins, luxR family XCR_2217 PF02561 Flagellar protein FliS XCR_2218 PF07195 Flagellar hook-associated protein 2 C-terminus XCR_2218 PF02465 Flagellar hook-associated protein 2 N-terminus XCR_2218 PF07196 Flagellin hook IN motif XCR_2219 PF00669 Bacterial flagellin N-terminal helical region XCR_2219 PF00700 Bacterial flagellin C-terminal helical region XCR_2221 PF00669 Bacterial flagellin N-terminal helical region XCR_2222 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCR_2222 PF07196 Flagellin hook IN motif XCR_2223 PF10135 Rod binding protein XCR_2223 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase XCR_2224 PF02119 Flagellar P-ring protein XCR_2225 PF02107 Flagellar L-ring protein XCR_2226 PF00460 Flagella basal body rod protein XCR_2226 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCR_2227 PF00460 Flagella basal body rod protein XCR_2227 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCR_2228 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCR_2228 PF07559 Flagellar basal body protein FlaE XCR_2228 PF00460 Flagella basal body rod protein XCR_2229 PF03963 Flagellar hook capping protein - N-terminal region XCR_2230 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCR_2230 PF00460 Flagella basal body rod protein XCR_2232 PF00072 Response regulator receiver domain XCR_2232 PF01584 CheW-like domain XCR_2236 PF00512 His Kinase A (phospho-acceptor) domain XCR_2236 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_2237 PF00990 Diguanylate cyclase, GGDEF domain XCR_2237 PF03707 Bacterial signalling protein N terminal repeat XCR_2237 PF00563 EAL domain XCR_2238 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_2238 PF07730 Histidine kinase XCR_2239 PF03707 Bacterial signalling protein N terminal repeat XCR_2239 PF00990 Diguanylate cyclase, GGDEF domain XCR_2239 PF00563 EAL domain XCR_2241 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_2241 PF00672 HAMP domain XCR_2241 PF12729 Four helix bundle sensory module for signal transduction XCR_2242 PF04356 Protein of unknown function (DUF489) XCR_2244 PF00293 NUDIX domain XCR_2245 PF02617 ATP-dependent Clp protease adaptor protein ClpS XCR_2246 PF07724 AAA domain (Cdc48 subfamily) XCR_2246 PF17871 AAA lid domain XCR_2246 PF02861 Clp amino terminal domain, pathogenicity island component XCR_2246 PF00004 ATPase family associated with various cellular activities (AAA) XCR_2246 PF10431 C-terminal, D2-small domain, of ClpB protein XCR_2247 PF01176 Translation initiation factor 1A / IF-1 XCR_2248 PF03588 Leucyl/phenylalanyl-tRNA protein transferase XCR_2250 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCR_2252 PF13491 4TM region of DNA translocase FtsK/SpoIIIE XCR_2252 PF17854 FtsK alpha domain XCR_2252 PF09397 Ftsk gamma domain XCR_2252 PF01580 FtsK/SpoIIIE family XCR_2254 PF03548 Outer membrane lipoprotein carrier protein LolA XCR_2255 PF00004 ATPase family associated with various cellular activities (AAA) XCR_2255 PF12002 MgsA AAA+ ATPase C terminal XCR_2255 PF16193 AAA C-terminal domain XCR_2256 PF02537 CrcB-like protein, Camphor Resistance (CrcB) XCR_2257 PF02803 Thiolase, C-terminal domain XCR_2257 PF00108 Thiolase, N-terminal domain XCR_2258 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XCR_2258 PF00378 Enoyl-CoA hydratase/isomerase XCR_2258 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XCR_2260 PF00334 Nucleoside diphosphate kinase XCR_2261 PF04055 Radical SAM superfamily XCR_2263 PF13464 Domain of unknown function (DUF4115) XCR_2265 PF13360 PQQ-like domain XCR_2265 PF01011 PQQ enzyme repeat XCR_2266 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal XCR_2266 PF01926 50S ribosome-binding GTPase XCR_2267 PF03454 MoeA C-terminal region (domain IV) XCR_2267 PF00994 Probable molybdopterin binding domain XCR_2267 PF03453 MoeA N-terminal region (domain I and II) XCR_2268 PF00899 ThiF family XCR_2272 PF00106 short chain dehydrogenase XCR_2273 PF00067 Cytochrome P450 XCR_2276 PF00107 Zinc-binding dehydrogenase XCR_2276 PF08240 Alcohol dehydrogenase GroES-like domain XCR_2276 PF13823 Alcohol dehydrogenase GroES-associated XCR_2279 PF03372 Endonuclease/Exonuclease/phosphatase family XCR_2280 PF03454 MoeA C-terminal region (domain IV) XCR_2280 PF03453 MoeA N-terminal region (domain I and II) XCR_2280 PF00994 Probable molybdopterin binding domain XCR_2281 PF12804 MobA-like NTP transferase domain XCR_2283 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XCR_2283 PF10414 Sirohaem synthase dimerisation region XCR_2283 PF14824 Sirohaem biosynthesis protein central XCR_2284 PF03861 ANTAR domain XCR_2284 PF00072 Response regulator receiver domain XCR_2287 PF07690 Major Facilitator Superfamily XCR_2288 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCR_2288 PF04324 BFD-like [2Fe-2S] binding domain XCR_2288 PF18267 Rubredoxin NAD+ reductase C-terminal domain XCR_2288 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XCR_2288 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XCR_2289 PF00355 Rieske [2Fe-2S] domain XCR_2289 PF11723 Homotrimeric ring hydroxylase XCR_2290 PF00384 Molybdopterin oxidoreductase XCR_2290 PF01568 Molydopterin dinucleotide binding domain XCR_2290 PF04879 Molybdopterin oxidoreductase Fe4S4 domain XCR_2290 PF04324 BFD-like [2Fe-2S] binding domain XCR_2291 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XCR_2294 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase XCR_2296 PF00483 Nucleotidyl transferase XCR_2298 PF01266 FAD dependent oxidoreductase XCR_2301 PF05974 Domain of unknown function (DUF892) XCR_2302 PF00072 Response regulator receiver domain XCR_2302 PF01339 CheB methylesterase XCR_2304 PF00563 EAL domain XCR_2304 PF08448 PAS fold XCR_2304 PF00990 Diguanylate cyclase, GGDEF domain XCR_2304 PF08447 PAS fold XCR_2306 PF12951 Passenger-associated-transport-repeat XCR_2307 PF00082 Subtilase family XCR_2307 PF03797 Autotransporter beta-domain XCR_2315 PF00512 His Kinase A (phospho-acceptor) domain XCR_2315 PF01590 GAF domain XCR_2315 PF00360 Phytochrome region XCR_2315 PF08446 PAS fold XCR_2315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_2318 PF07995 Glucose / Sorbosone dehydrogenase XCR_2319 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XCR_2321 PF05649 Peptidase family M13 XCR_2321 PF01431 Peptidase family M13 XCR_2325 PF02630 SCO1/SenC XCR_2329 PF01638 HxlR-like helix-turn-helix XCR_2334 PF09335 SNARE associated Golgi protein XCR_2335 PF07715 TonB-dependent Receptor Plug Domain XCR_2335 PF07660 Secretin and TonB N terminus short domain XCR_2335 PF00593 TonB dependent receptor XCR_2336 PF02203 Tar ligand binding domain homologue XCR_2336 PF00672 HAMP domain XCR_2336 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_2343 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_2343 PF13426 PAS domain XCR_2343 PF00072 Response regulator receiver domain XCR_2344 PF13188 PAS domain XCR_2344 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_2344 PF08448 PAS fold XCR_2344 PF00072 Response regulator receiver domain XCR_2344 PF00512 His Kinase A (phospho-acceptor) domain XCR_2345 PF10091 Putative glucoamylase XCR_2345 PF06165 Glycosyltransferase family 36 XCR_2345 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain XCR_2350 PF02303 Helix-destabilising protein XCR_2359 PF01106 NifU-like domain XCR_2360 PF01329 Pterin 4 alpha carbinolamine dehydratase XCR_2362 PF02535 ZIP Zinc transporter XCR_2363 PF01479 S4 domain XCR_2363 PF00849 RNA pseudouridylate synthase XCR_2364 PF12111 Polyribonucleotide phosphorylase C terminal XCR_2364 PF00575 S1 RNA binding domain XCR_2364 PF10150 Ribonuclease E/G family XCR_2366 PF00196 Bacterial regulatory proteins, luxR family XCR_2366 PF00072 Response regulator receiver domain XCR_2369 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCR_2370 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XCR_2370 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XCR_2370 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XCR_2373 PF04055 Radical SAM superfamily XCR_2373 PF06969 HemN C-terminal domain XCR_2378 PF01066 CDP-alcohol phosphatidyltransferase XCR_2379 PF01541 GIY-YIG catalytic domain XCR_2379 PF08459 UvrC Helix-hairpin-helix N-terminal XCR_2379 PF02151 UvrB/uvrC motif XCR_2381 PF01451 Low molecular weight phosphotyrosine protein phosphatase XCR_2382 PF02348 Cytidylyltransferase XCR_2383 PF02606 Tetraacyldisaccharide-1-P 4'-kinase XCR_2384 PF00664 ABC transporter transmembrane region XCR_2384 PF00005 ABC transporter XCR_2386 PF01618 MotA/TolQ/ExbB proton channel family XCR_2387 PF00753 Metallo-beta-lactamase superfamily XCR_2387 PF03772 Competence protein XCR_2391 PF00005 ABC transporter XCR_2392 PF12704 MacB-like periplasmic core domain XCR_2392 PF02687 FtsX-like permease family XCR_2394 PF03937 Flavinator of succinate dehydrogenase XCR_2395 PF13085 2Fe-2S iron-sulfur cluster binding domain XCR_2397 PF02910 Fumarate reductase flavoprotein C-term XCR_2397 PF00890 FAD binding domain XCR_2398 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XCR_2400 PF01571 Aminomethyltransferase folate-binding domain XCR_2401 PF17912 MalK OB fold domain XCR_2401 PF00005 ABC transporter XCR_2403 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XCR_2403 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XCR_2404 PF02685 Glucokinase XCR_2405 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase XCR_2407 PF00920 Dehydratase family XCR_2408 PF01081 KDPG and KHG aldolase XCR_2409 PF00873 AcrB/AcrD/AcrF family XCR_2410 PF00873 AcrB/AcrD/AcrF family XCR_2411 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCR_2413 PF00034 Cytochrome c XCR_2421 PF00563 EAL domain XCR_2421 PF00990 Diguanylate cyclase, GGDEF domain XCR_2421 PF08447 PAS fold XCR_2421 PF08448 PAS fold XCR_2422 PF17674 HHH domain XCR_2422 PF00575 S1 RNA binding domain XCR_2422 PF09371 Tex-like protein N-terminal domain XCR_2422 PF16921 Tex protein YqgF-like domain XCR_2424 PF00355 Rieske [2Fe-2S] domain XCR_2424 PF01266 FAD dependent oxidoreductase XCR_2428 PF00561 alpha/beta hydrolase fold XCR_2430 PF01066 CDP-alcohol phosphatidyltransferase XCR_2434 PF03618 Kinase/pyrophosphorylase XCR_2435 PF02896 PEP-utilising enzyme, TIM barrel domain XCR_2435 PF00391 PEP-utilising enzyme, mobile domain XCR_2435 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain XCR_2436 PF00924 Mechanosensitive ion channel XCR_2436 PF05552 Conserved TM helix XCR_2437 PF00929 Exonuclease XCR_2438 PF14437 MafB19-like deaminase XCR_2439 PF02742 Iron dependent repressor, metal binding and dimerisation domain XCR_2439 PF01325 Iron dependent repressor, N-terminal DNA binding domain XCR_2440 PF01566 Natural resistance-associated macrophage protein XCR_2441 PF00561 alpha/beta hydrolase fold XCR_2442 PF05977 Transmembrane secretion effector XCR_2443 PF07969 Amidohydrolase family XCR_2445 PF00857 Isochorismatase family XCR_2447 PF13185 GAF domain XCR_2447 PF13492 GAF domain XCR_2447 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_2447 PF07730 Histidine kinase XCR_2448 PF00072 Response regulator receiver domain XCR_2448 PF00196 Bacterial regulatory proteins, luxR family XCR_2451 PF02540 NAD synthase XCR_2451 PF00117 Glutamine amidotransferase class-I XCR_2451 PF00958 GMP synthase C terminal domain XCR_2452 PF00571 CBS domain XCR_2452 PF00478 IMP dehydrogenase / GMP reductase domain XCR_2453 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain XCR_2453 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain XCR_2455 PF00999 Sodium/hydrogen exchanger family XCR_2455 PF02254 TrkA-N domain XCR_2456 PF00483 Nucleotidyl transferase XCR_2457 PF02719 Polysaccharide biosynthesis protein XCR_2458 PF00953 Glycosyl transferase family 4 XCR_2459 PF18073 Rubredoxin metal binding domain XCR_2461 PF00216 Bacterial DNA-binding protein XCR_2462 PF00575 S1 RNA binding domain XCR_2463 PF02224 Cytidylate kinase XCR_2464 PF00444 Ribosomal protein L36 XCR_2466 PF04371 Porphyromonas-type peptidyl-arginine deiminase XCR_2467 PF00795 Carbon-nitrogen hydrolase XCR_2472 PF00528 Binding-protein-dependent transport system inner membrane component XCR_2473 PF00528 Binding-protein-dependent transport system inner membrane component XCR_2474 PF13416 Bacterial extracellular solute-binding protein XCR_2477 PF00356 Bacterial regulatory proteins, lacI family XCR_2479 PF03795 YCII-related domain XCR_2480 PF02616 Segregation and condensation protein ScpA XCR_2481 PF04079 Segregation and condensation complex subunit ScpB XCR_2482 PF01479 S4 domain XCR_2482 PF00849 RNA pseudouridylate synthase XCR_2485 PF00795 Carbon-nitrogen hydrolase XCR_2486 PF00155 Aminotransferase class I and II XCR_2488 PF00005 ABC transporter XCR_2489 PF03379 CcmB protein XCR_2490 PF01578 Cytochrome C assembly protein XCR_2492 PF03100 CcmE XCR_2493 PF01578 Cytochrome C assembly protein XCR_2493 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XCR_2494 PF08534 Redoxin XCR_2495 PF03918 Cytochrome C biogenesis protein XCR_2497 PF00561 alpha/beta hydrolase fold XCR_2499 PF00005 ABC transporter XCR_2499 PF00664 ABC transporter transmembrane region XCR_2500 PF00664 ABC transporter transmembrane region XCR_2500 PF00005 ABC transporter XCR_2501 PF01654 Cytochrome bd terminal oxidase subunit I XCR_2502 PF02322 Cytochrome bd terminal oxidase subunit II XCR_2505 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain XCR_2505 PF02129 X-Pro dipeptidyl-peptidase (S15 family) XCR_2507 PF00171 Aldehyde dehydrogenase family XCR_2508 PF01472 PUA domain XCR_2508 PF00696 Amino acid kinase family XCR_2511 PF00206 Lyase XCR_2512 PF01118 Semialdehyde dehydrogenase, NAD binding domain XCR_2514 PF00696 Amino acid kinase family XCR_2514 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase XCR_2516 PF00764 Arginosuccinate synthase XCR_2518 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XCR_2518 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XCR_2520 PF01406 tRNA synthetases class I (C) catalytic domain XCR_2520 PF09190 DALR domain XCR_2521 PF02657 Fe-S metabolism associated domain XCR_2522 PF07690 Major Facilitator Superfamily XCR_2525 PF01258 Prokaryotic dksA/traR C4-type zinc finger XCR_2527 PF01979 Amidohydrolase family XCR_2528 PF01551 Peptidase family M23 XCR_2528 PF08460 Bacterial SH3 domain XCR_2530 PF06751 Ethanolamine ammonia lyase large subunit (EutB) XCR_2531 PF05985 Ethanolamine ammonia-lyase light chain (EutC) XCR_2533 PF00753 Metallo-beta-lactamase superfamily XCR_2535 PF01095 Pectinesterase XCR_2537 PF00295 Glycosyl hydrolases family 28 XCR_2539 PF13419 Haloacid dehalogenase-like hydrolase XCR_2541 PF01979 Amidohydrolase family XCR_2543 PF09285 Elongation factor P, C-terminal XCR_2543 PF08207 Elongation factor P (EF-P) KOW-like domain XCR_2543 PF01132 Elongation factor P (EF-P) OB domain XCR_2544 PF04055 Radical SAM superfamily XCR_2545 PF00563 EAL domain XCR_2545 PF00990 Diguanylate cyclase, GGDEF domain XCR_2545 PF03707 Bacterial signalling protein N terminal repeat XCR_2545 PF13188 PAS domain XCR_2547 PF00588 SpoU rRNA Methylase family XCR_2548 PF00459 Inositol monophosphatase family XCR_2549 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XCR_2549 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XCR_2550 PF00545 ribonuclease XCR_2553 PF00270 DEAD/DEAH box helicase XCR_2553 PF03880 DbpA RNA binding domain XCR_2553 PF00271 Helicase conserved C-terminal domain XCR_2554 PF00156 Phosphoribosyl transferase domain XCR_2555 PF02696 Uncharacterized ACR, YdiU/UPF0061 family XCR_2557 PF07859 alpha/beta hydrolase fold XCR_2559 PF00313 'Cold-shock' DNA-binding domain XCR_2560 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 XCR_2561 PF07152 YaeQ protein XCR_2563 PF00990 Diguanylate cyclase, GGDEF domain XCR_2563 PF00563 EAL domain XCR_2563 PF03707 Bacterial signalling protein N terminal repeat XCR_2564 PF01435 Peptidase family M48 XCR_2565 PF00749 tRNA synthetases class I (E and Q), catalytic domain XCR_2566 PF00106 short chain dehydrogenase XCR_2567 PF05233 PHB accumulation regulatory domain XCR_2567 PF07879 PHB/PHA accumulation regulator DNA-binding domain XCR_2570 PF08676 MutL C terminal dimerisation domain XCR_2570 PF01119 DNA mismatch repair protein, C-terminal domain XCR_2571 PF11741 AMIN domain XCR_2571 PF01520 N-acetylmuramoyl-L-alanine amidase XCR_2573 PF01256 Carbohydrate kinase XCR_2573 PF03853 YjeF-related protein N-terminus XCR_2574 PF08331 Domain of unknown function (DUF1730) XCR_2575 PF02601 Exonuclease VII, large subunit XCR_2575 PF13742 OB-fold nucleic acid binding domain XCR_2577 PF03781 Sulfatase-modifying factor enzyme 1 XCR_2578 PF01612 3'-5' exonuclease XCR_2578 PF00570 HRDC domain XCR_2579 PF13298 DNA polymerase Ligase (LigD) XCR_2579 PF04679 ATP dependent DNA ligase C terminal region XCR_2579 PF01068 ATP dependent DNA ligase domain XCR_2588 PF01584 CheW-like domain XCR_2589 PF00672 HAMP domain XCR_2589 PF12729 Four helix bundle sensory module for signal transduction XCR_2589 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_2590 PF00271 Helicase conserved C-terminal domain XCR_2590 PF00270 DEAD/DEAH box helicase XCR_2590 PF08494 DEAD/H associated XCR_2593 PF04386 Stringent starvation protein B XCR_2594 PF02798 Glutathione S-transferase, N-terminal domain XCR_2594 PF00043 Glutathione S-transferase, C-terminal domain XCR_2595 PF02167 Cytochrome C1 family XCR_2596 PF00033 Cytochrome b/b6/petB XCR_2596 PF00032 Cytochrome b(C-terminal)/b6/petD XCR_2597 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal XCR_2597 PF00355 Rieske [2Fe-2S] domain XCR_2598 PF01464 Transglycosylase SLT domain XCR_2601 PF02798 Glutathione S-transferase, N-terminal domain XCR_2601 PF14497 Glutathione S-transferase, C-terminal domain XCR_2602 PF00919 Uncharacterized protein family UPF0004 XCR_2602 PF04055 Radical SAM superfamily XCR_2602 PF01938 TRAM domain XCR_2603 PF02562 PhoH-like protein XCR_2605 PF02130 Uncharacterized protein family UPF0054 XCR_2607 PF03471 Transporter associated domain XCR_2607 PF00571 CBS domain XCR_2611 PF00171 Aldehyde dehydrogenase family XCR_2613 PF00528 Binding-protein-dependent transport system inner membrane component XCR_2614 PF00528 Binding-protein-dependent transport system inner membrane component XCR_2615 PF00005 ABC transporter XCR_2615 PF08402 TOBE domain XCR_2616 PF02321 Outer membrane efflux protein XCR_2617 PF07690 Major Facilitator Superfamily XCR_2618 PF13533 Biotin-lipoyl like XCR_2620 PF13416 Bacterial extracellular solute-binding protein XCR_2622 PF00202 Aminotransferase class-III XCR_2623 PF05598 Transposase domain (DUF772) XCR_2623 PF01609 Transposase DDE domain XCR_2624 PF00120 Glutamine synthetase, catalytic domain XCR_2625 PF07722 Peptidase C26 XCR_2626 PF00120 Glutamine synthetase, catalytic domain XCR_2627 PF01266 FAD dependent oxidoreductase XCR_2628 PF00072 Response regulator receiver domain XCR_2628 PF00990 Diguanylate cyclase, GGDEF domain XCR_2629 PF01814 Hemerythrin HHE cation binding domain XCR_2630 PF01814 Hemerythrin HHE cation binding domain XCR_2631 PF00083 Sugar (and other) transporter XCR_2631 PF07690 Major Facilitator Superfamily XCR_2633 PF00384 Molybdopterin oxidoreductase XCR_2634 PF02634 FdhD/NarQ family XCR_2635 PF07690 Major Facilitator Superfamily XCR_2637 PF00202 Aminotransferase class-III XCR_2639 PF04286 Protein of unknown function (DUF445) XCR_2640 PF00072 Response regulator receiver domain XCR_2640 PF00512 His Kinase A (phospho-acceptor) domain XCR_2640 PF00672 HAMP domain XCR_2640 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XCR_2640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_2640 PF01627 Hpt domain XCR_2641 PF00072 Response regulator receiver domain XCR_2642 PF07690 Major Facilitator Superfamily XCR_2643 PF00857 Isochorismatase family XCR_2644 PF12833 Helix-turn-helix domain XCR_2645 PF05088 Bacterial NAD-glutamate dehydrogenase XCR_2647 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCR_2647 PF00529 HlyD membrane-fusion protein of T1SS XCR_2648 PF00873 AcrB/AcrD/AcrF family XCR_2649 PF00356 Bacterial regulatory proteins, lacI family XCR_2650 PF02896 PEP-utilising enzyme, TIM barrel domain XCR_2650 PF05524 PEP-utilising enzyme, N-terminal XCR_2650 PF00381 PTS HPr component phosphorylation site XCR_2650 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XCR_2650 PF00391 PEP-utilising enzyme, mobile domain XCR_2651 PF00294 pfkB family carbohydrate kinase XCR_2652 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit XCR_2661 PF07549 SecD/SecF GG Motif XCR_2661 PF02355 Protein export membrane protein XCR_2662 PF02355 Protein export membrane protein XCR_2662 PF13721 SecD export protein N-terminal TM region XCR_2662 PF07549 SecD/SecF GG Motif XCR_2664 PF02699 Preprotein translocase subunit XCR_2665 PF01702 Queuine tRNA-ribosyltransferase XCR_2666 PF02547 Queuosine biosynthesis protein XCR_2670 PF00202 Aminotransferase class-III XCR_2677 PF02927 Cellulase N-terminal ig-like domain XCR_2677 PF00759 Glycosyl hydrolase family 9 XCR_2679 PF00037 4Fe-4S binding domain XCR_2682 PF01467 Cytidylyltransferase-like XCR_2685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_2685 PF00183 Hsp90 protein XCR_2686 PF05598 Transposase domain (DUF772) XCR_2686 PF01609 Transposase DDE domain XCR_2687 PF01527 Transposase XCR_2688 PF13683 Integrase core domain XCR_2688 PF13276 HTH-like domain XCR_2689 PF13683 Integrase core domain XCR_2689 PF13276 HTH-like domain XCR_2691 PF01527 Transposase XCR_2695 PF07715 TonB-dependent Receptor Plug Domain XCR_2695 PF00593 TonB dependent receptor XCR_2697 PF00326 Prolyl oligopeptidase family XCR_2697 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XCR_2706 PF13520 Amino acid permease XCR_2710 PF00557 Metallopeptidase family M24 XCR_2710 PF01321 Creatinase/Prolidase N-terminal domain XCR_2711 PF00171 Aldehyde dehydrogenase family XCR_2712 PF00701 Dihydrodipicolinate synthetase family XCR_2713 PF04324 BFD-like [2Fe-2S] binding domain XCR_2713 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCR_2715 PF01266 FAD dependent oxidoreductase XCR_2716 PF05544 Proline racemase XCR_2719 PF00448 SRP54-type protein, GTPase domain XCR_2719 PF02881 SRP54-type protein, helical bundle domain XCR_2721 PF00633 Helix-hairpin-helix motif XCR_2721 PF00730 HhH-GPD superfamily base excision DNA repair protein XCR_2721 PF14815 NUDIX domain XCR_2721 PF10576 Iron-sulfur binding domain of endonuclease III XCR_2722 PF04362 Bacterial Fe(2+) trafficking XCR_2724 PF00072 Response regulator receiver domain XCR_2724 PF13426 PAS domain XCR_2724 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_2725 PF00893 Small Multidrug Resistance protein XCR_2726 PF00893 Small Multidrug Resistance protein XCR_2730 PF00512 His Kinase A (phospho-acceptor) domain XCR_2730 PF00072 Response regulator receiver domain XCR_2730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_2730 PF13188 PAS domain XCR_2730 PF08448 PAS fold XCR_2745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCR_2745 PF12806 Acetyl-CoA dehydrogenase C-terminal like XCR_2745 PF02770 Acyl-CoA dehydrogenase, middle domain XCR_2745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCR_2747 PF02779 Transketolase, pyrimidine binding domain XCR_2747 PF02780 Transketolase, C-terminal domain XCR_2747 PF13292 1-deoxy-D-xylulose-5-phosphate synthase XCR_2751 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XCR_2752 PF00753 Metallo-beta-lactamase superfamily XCR_2752 PF16123 Hydroxyacylglutathione hydrolase C-terminus XCR_2753 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XCR_2753 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XCR_2756 PF03808 Glycosyl transferase WecB/TagA/CpsF family XCR_2759 PF01943 Polysaccharide biosynthesis protein XCR_2761 PF00534 Glycosyl transferases group 1 XCR_2761 PF13439 Glycosyltransferase Family 4 XCR_2765 PF02397 Bacterial sugar transferase XCR_2770 PF13411 MerR HTH family regulatory protein XCR_2771 PF00216 Bacterial DNA-binding protein XCR_2772 PF03147 Ferredoxin-fold anticodon binding domain XCR_2772 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain XCR_2772 PF01588 Putative tRNA binding domain XCR_2772 PF03484 tRNA synthetase B5 domain XCR_2772 PF03483 B3/4 domain XCR_2773 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain XCR_2773 PF01409 tRNA synthetases class II core domain (F) XCR_2774 PF00453 Ribosomal protein L20 XCR_2775 PF01632 Ribosomal protein L35 XCR_2776 PF00707 Translation initiation factor IF-3, C-terminal domain XCR_2776 PF05198 Translation initiation factor IF-3, N-terminal domain XCR_2777 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XCR_2777 PF03129 Anticodon binding domain XCR_2777 PF02824 TGS domain XCR_2777 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XCR_2778 PF00356 Bacterial regulatory proteins, lacI family XCR_2779 PF00128 Alpha amylase, catalytic domain XCR_2779 PF00686 Starch binding domain XCR_2780 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 XCR_2782 PF14508 Glycosyl-hydrolase 97 N-terminal XCR_2782 PF10566 Glycoside hydrolase 97 XCR_2782 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation XCR_2787 PF05598 Transposase domain (DUF772) XCR_2787 PF01609 Transposase DDE domain XCR_2790 PF00128 Alpha amylase, catalytic domain XCR_2792 PF01527 Transposase XCR_2793 PF13276 HTH-like domain XCR_2793 PF13683 Integrase core domain XCR_2797 PF13683 Integrase core domain XCR_2797 PF13276 HTH-like domain XCR_2798 PF01527 Transposase XCR_2807 PF03135 CagE, TrbE, VirB family, component of type IV transporter system XCR_2809 PF04956 TrbC/VIRB2 family XCR_2810 PF01464 Transglycosylase SLT domain XCR_2811 PF00437 Type II/IV secretion system protein XCR_2812 PF03743 Bacterial conjugation TrbI-like protein XCR_2814 PF04335 VirB8 protein XCR_2817 PF02534 Type IV secretory system Conjugative DNA transfer XCR_2820 PF02151 UvrB/uvrC motif XCR_2820 PF04851 Type III restriction enzyme, res subunit XCR_2820 PF00271 Helicase conserved C-terminal domain XCR_2820 PF17757 UvrB interaction domain XCR_2820 PF12344 Ultra-violet resistance protein B XCR_2822 PF05567 Neisseria PilC beta-propeller domain XCR_2824 PF11892 Domain of unknown function (DUF3412) XCR_2824 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases XCR_2824 PF03641 Possible lysine decarboxylase XCR_2825 PF00593 TonB dependent receptor XCR_2827 PF01914 MarC family integral membrane protein XCR_2829 PF00462 Glutaredoxin XCR_2830 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XCR_2830 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XCR_2831 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain XCR_2831 PF02222 ATP-grasp domain XCR_2832 PF00731 AIR carboxylase XCR_2834 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain XCR_2834 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain XCR_2836 PF00013 KH domain XCR_2836 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain XCR_2836 PF00575 S1 RNA binding domain XCR_2836 PF03725 3' exoribonuclease family, domain 2 XCR_2836 PF01138 3' exoribonuclease family, domain 1 XCR_2837 PF00312 Ribosomal protein S15 XCR_2838 PF09157 Pseudouridine synthase II TruB, C-terminal XCR_2838 PF16198 tRNA pseudouridylate synthase B C-terminal domain XCR_2838 PF01509 TruB family pseudouridylate synthase (N terminal domain) XCR_2839 PF02033 Ribosome-binding factor A XCR_2840 PF04760 Translation initiation factor IF-2, N-terminal region XCR_2840 PF08364 Bacterial translation initiation factor IF-2 associated region XCR_2840 PF00009 Elongation factor Tu GTP binding domain XCR_2840 PF11987 Translation-initiation factor 2 XCR_2841 PF00575 S1 RNA binding domain XCR_2841 PF08529 NusA N-terminal domain XCR_2841 PF13184 NusA-like KH domain XCR_2842 PF02576 RimP N-terminal domain XCR_2842 PF17384 RimP C-terminal SH3 domain XCR_2844 PF00361 Proton-conducting membrane transporter XCR_2845 PF00361 Proton-conducting membrane transporter XCR_2845 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus XCR_2846 PF00361 Proton-conducting membrane transporter XCR_2846 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XCR_2847 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XCR_2848 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 XCR_2849 PF12838 4Fe-4S dicluster domain XCR_2850 PF00146 NADH dehydrogenase XCR_2851 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XCR_2851 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal XCR_2851 PF00384 Molybdopterin oxidoreductase XCR_2852 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit XCR_2852 PF10531 SLBB domain XCR_2852 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region XCR_2854 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit XCR_2855 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit XCR_2856 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit XCR_2857 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 XCR_2860 PF00121 Triosephosphate isomerase XCR_2861 PF00106 short chain dehydrogenase XCR_2862 PF01527 Transposase XCR_2863 PF13683 Integrase core domain XCR_2863 PF13276 HTH-like domain XCR_2865 PF01152 Bacterial-like globin XCR_2867 PF00563 EAL domain XCR_2867 PF00990 Diguanylate cyclase, GGDEF domain XCR_2867 PF03707 Bacterial signalling protein N terminal repeat XCR_2870 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XCR_2870 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XCR_2870 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XCR_2870 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XCR_2871 PF17848 Acetyl-coA carboxylase zinc finger domain XCR_2871 PF01039 Carboxyl transferase domain XCR_2873 PF00290 Tryptophan synthase alpha chain XCR_2875 PF00291 Pyridoxal-phosphate dependent enzyme XCR_2877 PF03466 LysR substrate binding domain XCR_2877 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_2878 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase XCR_2879 PF01416 tRNA pseudouridine synthase XCR_2883 PF02774 Semialdehyde dehydrogenase, dimerisation domain XCR_2883 PF01118 Semialdehyde dehydrogenase, NAD binding domain XCR_2884 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XCR_2884 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XCR_2885 PF01264 Chorismate synthase XCR_2887 PF05175 Methyltransferase small domain XCR_2888 PF02630 SCO1/SenC XCR_2889 PF02666 Phosphatidylserine decarboxylase XCR_2893 PF05872 Bacterial protein of unknown function (DUF853) XCR_2896 PF00293 NUDIX domain XCR_2901 PF03449 Transcription elongation factor, N-terminal XCR_2901 PF01272 Transcription elongation factor, GreA/GreB, C-term XCR_2902 PF00919 Uncharacterized protein family UPF0004 XCR_2902 PF18693 TRAM domain XCR_2902 PF04055 Radical SAM superfamily XCR_2903 PF00665 Integrase core domain XCR_2916 PF01738 Dienelactone hydrolase family XCR_2920 PF00692 dUTPase XCR_2921 PF10609 NUBPL iron-transfer P-loop NTPase XCR_2922 PF07715 TonB-dependent Receptor Plug Domain XCR_2922 PF00593 TonB dependent receptor XCR_2924 PF01431 Peptidase family M13 XCR_2924 PF05649 Peptidase family M13 XCR_2925 PF05649 Peptidase family M13 XCR_2925 PF01431 Peptidase family M13 XCR_2929 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XCR_2929 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCR_2930 PF01266 FAD dependent oxidoreductase XCR_2931 PF04235 Protein of unknown function (DUF418) XCR_2932 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCR_2933 PF00877 NlpC/P60 family XCR_2934 PF00877 NlpC/P60 family XCR_2937 PF08241 Methyltransferase domain XCR_2938 PF00375 Sodium:dicarboxylate symporter family XCR_2939 PF00245 Alkaline phosphatase XCR_2940 PF01171 PP-loop family XCR_2940 PF09179 TilS substrate binding domain XCR_2940 PF11734 TilS substrate C-terminal domain XCR_2941 PF02609 Exonuclease VII small subunit XCR_2942 PF00348 Polyprenyl synthetase XCR_2945 PF14521 Lysine-specific metallo-endopeptidase XCR_2947 PF01523 Putative modulator of DNA gyrase XCR_2948 PF04751 Protein of unknown function (DUF615) XCR_2949 PF01523 Putative modulator of DNA gyrase XCR_2951 PF13502 AsmA-like C-terminal region XCR_2951 PF13116 Protein of unknown function XCR_2952 PF10150 Ribonuclease E/G family XCR_2952 PF00575 S1 RNA binding domain XCR_2953 PF02545 Maf-like protein XCR_2955 PF04402 Protein of unknown function (DUF541) XCR_2959 PF02590 Predicted SPOUT methyltransferase XCR_2962 PF01467 Cytidylyltransferase-like XCR_2966 PF13603 Leucyl-tRNA synthetase, Domain 2 XCR_2966 PF00133 tRNA synthetases class I (I, L, M and V) XCR_2966 PF08264 Anticodon-binding domain of tRNA XCR_2968 PF00085 Thioredoxin XCR_2970 PF04070 Domain of unknown function (DUF378) XCR_2974 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_2974 PF03466 LysR substrate binding domain XCR_2975 PF01022 Bacterial regulatory protein, arsR family XCR_2981 PF01527 Transposase XCR_2982 PF13276 HTH-like domain XCR_2982 PF13333 Integrase core domain XCR_2982 PF00665 Integrase core domain XCR_2983 PF00005 ABC transporter XCR_2983 PF00664 ABC transporter transmembrane region XCR_2985 PF00999 Sodium/hydrogen exchanger family XCR_2986 PF00144 Beta-lactamase XCR_2987 PF03737 Aldolase/RraA XCR_2991 PF01479 S4 domain XCR_2991 PF00849 RNA pseudouridylate synthase XCR_2992 PF00563 EAL domain XCR_2992 PF08448 PAS fold XCR_2992 PF00990 Diguanylate cyclase, GGDEF domain XCR_2993 PF00271 Helicase conserved C-terminal domain XCR_2993 PF00270 DEAD/DEAH box helicase XCR_2993 PF03880 DbpA RNA binding domain XCR_2999 PF01494 FAD binding domain XCR_3005 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain XCR_3005 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain XCR_3008 PF00654 Voltage gated chloride channel XCR_3012 PF00593 TonB dependent receptor XCR_3012 PF07715 TonB-dependent Receptor Plug Domain XCR_3016 PF02322 Cytochrome bd terminal oxidase subunit II XCR_3017 PF01654 Cytochrome bd terminal oxidase subunit I XCR_3019 PF12838 4Fe-4S dicluster domain XCR_3019 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XCR_3019 PF00384 Molybdopterin oxidoreductase XCR_3019 PF01568 Molydopterin dinucleotide binding domain XCR_3019 PF04879 Molybdopterin oxidoreductase Fe4S4 domain XCR_3022 PF05922 Peptidase inhibitor I9 XCR_3022 PF13860 FlgD Ig-like domain XCR_3022 PF00082 Subtilase family XCR_3022 PF02225 PA domain XCR_3025 PF00248 Aldo/keto reductase family XCR_3026 PF07690 Major Facilitator Superfamily XCR_3027 PF03466 LysR substrate binding domain XCR_3027 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_3029 PF00082 Subtilase family XCR_3029 PF01483 Proprotein convertase P-domain XCR_3032 PF12833 Helix-turn-helix domain XCR_3032 PF06719 AraC-type transcriptional regulator N-terminus XCR_3035 PF03466 LysR substrate binding domain XCR_3035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_3036 PF00248 Aldo/keto reductase family XCR_3037 PF00440 Bacterial regulatory proteins, tetR family XCR_3037 PF16859 Tetracyclin repressor-like, C-terminal domain XCR_3038 PF02321 Outer membrane efflux protein XCR_3039 PF00873 AcrB/AcrD/AcrF family XCR_3040 PF00529 HlyD membrane-fusion protein of T1SS XCR_3040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCR_3042 PF01475 Ferric uptake regulator family XCR_3043 PF00749 tRNA synthetases class I (E and Q), catalytic domain XCR_3049 PF06123 Inner membrane protein CreD XCR_3050 PF00672 HAMP domain XCR_3050 PF00512 His Kinase A (phospho-acceptor) domain XCR_3050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_3052 PF00486 Transcriptional regulatory protein, C terminal XCR_3052 PF00072 Response regulator receiver domain XCR_3056 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ XCR_3058 PF00271 Helicase conserved C-terminal domain XCR_3058 PF03461 TRCF domain XCR_3058 PF17757 UvrB interaction domain XCR_3058 PF00270 DEAD/DEAH box helicase XCR_3058 PF02559 CarD-like/TRCF domain XCR_3061 PF09078 CheY binding XCR_3061 PF02895 Signal transducing histidine kinase, homodimeric domain XCR_3061 PF01584 CheW-like domain XCR_3061 PF01627 Hpt domain XCR_3061 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_3062 PF02203 Tar ligand binding domain homologue XCR_3062 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_3062 PF00672 HAMP domain XCR_3063 PF01584 CheW-like domain XCR_3064 PF00563 EAL domain XCR_3064 PF00990 Diguanylate cyclase, GGDEF domain XCR_3064 PF03707 Bacterial signalling protein N terminal repeat XCR_3065 PF03705 CheR methyltransferase, all-alpha domain XCR_3065 PF01739 CheR methyltransferase, SAM binding domain XCR_3066 PF01339 CheB methylesterase XCR_3066 PF00072 Response regulator receiver domain XCR_3068 PF13091 PLD-like domain XCR_3069 PF05649 Peptidase family M13 XCR_3069 PF01431 Peptidase family M13 XCR_3071 PF00300 Histidine phosphatase superfamily (branch 1) XCR_3072 PF04493 Endonuclease V XCR_3077 PF05726 Pirin C-terminal cupin domain XCR_3077 PF02678 Pirin XCR_3079 PF13722 5TM C-terminal transporter carbon starvation CstA XCR_3079 PF02554 Carbon starvation protein CstA XCR_3080 PF04328 Selenoprotein, putative XCR_3087 PF12804 MobA-like NTP transferase domain XCR_3090 PF13478 XdhC Rossmann domain XCR_3090 PF02625 XdhC and CoxI family XCR_3091 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XCR_3091 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XCR_3092 PF00941 FAD binding domain in molybdopterin dehydrogenase XCR_3092 PF03450 CO dehydrogenase flavoprotein C-terminal domain XCR_3093 PF10518 TAT (twin-arginine translocation) pathway signal sequence XCR_3093 PF01799 [2Fe-2S] binding domain XCR_3093 PF00111 2Fe-2S iron-sulfur cluster binding domain XCR_3094 PF08240 Alcohol dehydrogenase GroES-like domain XCR_3094 PF00107 Zinc-binding dehydrogenase XCR_3096 PF00360 Phytochrome region XCR_3096 PF00990 Diguanylate cyclase, GGDEF domain XCR_3096 PF01590 GAF domain XCR_3096 PF00563 EAL domain XCR_3098 PF07728 AAA domain (dynein-related subfamily) XCR_3098 PF12102 Domain of unknown function (DUF3578) XCR_3100 PF00436 Single-strand binding protein family XCR_3101 PF00348 Polyprenyl synthetase XCR_3103 PF08245 Mur ligase middle domain XCR_3106 PF00696 Amino acid kinase family XCR_3106 PF01842 ACT domain XCR_3107 PF02567 Phenazine biosynthesis-like protein XCR_3108 PF02567 Phenazine biosynthesis-like protein XCR_3110 PF02566 OsmC-like protein XCR_3111 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XCR_3111 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XCR_3112 PF03652 Holliday junction resolvase XCR_3113 PF02622 Uncharacterized ACR, COG1678 XCR_3114 PF13687 Domain of unknown function (DUF4153) XCR_3115 PF13673 Acetyltransferase (GNAT) domain XCR_3115 PF00958 GMP synthase C terminal domain XCR_3115 PF03352 Methyladenine glycosylase XCR_3115 PF13302 Acetyltransferase (GNAT) domain XCR_3115 PF00117 Glutamine amidotransferase class-I XCR_3119 PF00437 Type II/IV secretion system protein XCR_3120 PF00437 Type II/IV secretion system protein XCR_3121 PF01168 Alanine racemase, N-terminal domain XCR_3122 PF03807 NADP oxidoreductase coenzyme F420-dependent XCR_3122 PF14748 Pyrroline-5-carboxylate reductase dimerisation XCR_3128 PF01965 DJ-1/PfpI family XCR_3131 PF01458 Uncharacterized protein family (UPF0051) XCR_3132 PF00005 ABC transporter XCR_3133 PF01458 Uncharacterized protein family (UPF0051) XCR_3134 PF00266 Aminotransferase class-V XCR_3136 PF00355 Rieske [2Fe-2S] domain XCR_3138 PF07715 TonB-dependent Receptor Plug Domain XCR_3138 PF00593 TonB dependent receptor XCR_3139 PF18331 PKHD-type hydroxylase C-terminal domain XCR_3139 PF13640 2OG-Fe(II) oxygenase superfamily XCR_3145 PF02424 ApbE family XCR_3146 PF00175 Oxidoreductase NAD-binding domain XCR_3146 PF00258 Flavodoxin XCR_3146 PF00667 FAD binding domain XCR_3150 PF07687 Peptidase dimerisation domain XCR_3150 PF01546 Peptidase family M20/M25/M40 XCR_3153 PF01636 Phosphotransferase enzyme family XCR_3154 PF00483 Nucleotidyl transferase XCR_3155 PF00308 Bacterial dnaA protein XCR_3156 PF01594 AI-2E family transporter XCR_3158 PF02769 AIR synthase related protein, C-terminal domain XCR_3158 PF00586 AIR synthase related protein, N-terminal domain XCR_3161 PF00551 Formyl transferase XCR_3166 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XCR_3167 PF01722 BolA-like protein XCR_3168 PF00571 CBS domain XCR_3168 PF01380 SIS domain XCR_3172 PF00005 ABC transporter XCR_3173 PF00309 Sigma-54 factor, Activator interacting domain (AID) XCR_3173 PF04963 Sigma-54 factor, core binding domain XCR_3173 PF04552 Sigma-54, DNA binding domain XCR_3174 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein XCR_3175 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XCR_3176 PF07475 HPr Serine kinase C-terminal domain XCR_3176 PF02603 HPr Serine kinase N terminus XCR_3177 PF03668 P-loop ATPase protein family XCR_3179 PF00381 PTS HPr component phosphorylation site XCR_3180 PF02896 PEP-utilising enzyme, TIM barrel domain XCR_3180 PF00391 PEP-utilising enzyme, mobile domain XCR_3180 PF05524 PEP-utilising enzyme, N-terminal XCR_3181 PF00571 CBS domain XCR_3181 PF03448 MgtE intracellular N domain XCR_3181 PF01769 Divalent cation transporter XCR_3183 PF00756 Putative esterase XCR_3184 PF02322 Cytochrome bd terminal oxidase subunit II XCR_3185 PF01654 Cytochrome bd terminal oxidase subunit I XCR_3186 PF00324 Amino acid permease XCR_3187 PF00544 Pectate lyase XCR_3189 PF00561 alpha/beta hydrolase fold XCR_3190 PF00196 Bacterial regulatory proteins, luxR family XCR_3192 PF00324 Amino acid permease XCR_3195 PF00072 Response regulator receiver domain XCR_3195 PF01339 CheB methylesterase XCR_3206 PF09278 MerR, DNA binding XCR_3206 PF00376 MerR family regulatory protein XCR_3207 PF07690 Major Facilitator Superfamily XCR_3209 PF03738 Glutathionylspermidine synthase preATP-grasp XCR_3214 PF04012 PspA/IM30 family XCR_3216 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region XCR_3216 PF01243 Pyridoxamine 5'-phosphate oxidase XCR_3217 PF01202 Shikimate kinase XCR_3218 PF01761 3-dehydroquinate synthase XCR_3220 PF01208 Uroporphyrinogen decarboxylase (URO-D) XCR_3222 PF07690 Major Facilitator Superfamily XCR_3223 PF17149 Periplasmic sensor domain found in signal transduction proteins XCR_3223 PF00072 Response regulator receiver domain XCR_3223 PF01627 Hpt domain XCR_3223 PF00512 His Kinase A (phospho-acceptor) domain XCR_3223 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_3223 PF00672 HAMP domain XCR_3224 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_3224 PF00512 His Kinase A (phospho-acceptor) domain XCR_3224 PF01627 Hpt domain XCR_3224 PF00072 Response regulator receiver domain XCR_3224 PF00672 HAMP domain XCR_3224 PF17149 Periplasmic sensor domain found in signal transduction proteins XCR_3225 PF00672 HAMP domain XCR_3225 PF17149 Periplasmic sensor domain found in signal transduction proteins XCR_3225 PF00512 His Kinase A (phospho-acceptor) domain XCR_3225 PF01627 Hpt domain XCR_3225 PF00072 Response regulator receiver domain XCR_3225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_3226 PF04264 YceI-like domain XCR_3230 PF03315 Serine dehydratase beta chain XCR_3230 PF03313 Serine dehydratase alpha chain XCR_3231 PF12697 Alpha/beta hydrolase family XCR_3232 PF03447 Homoserine dehydrogenase, NAD binding domain XCR_3232 PF00742 Homoserine dehydrogenase XCR_3232 PF00696 Amino acid kinase family XCR_3233 PF01053 Cys/Met metabolism PLP-dependent enzyme XCR_3234 PF00561 alpha/beta hydrolase fold XCR_3235 PF01551 Peptidase family M23 XCR_3235 PF08460 Bacterial SH3 domain XCR_3236 PF00009 Elongation factor Tu GTP binding domain XCR_3236 PF16658 Class II release factor RF3, C-terminal domain XCR_3237 PF03006 Haemolysin-III related XCR_3238 PF05170 AsmA family XCR_3239 PF00478 IMP dehydrogenase / GMP reductase domain XCR_3239 PF00571 CBS domain XCR_3240 PF00535 Glycosyl transferase family 2 XCR_3241 PF00912 Transglycosylase XCR_3242 PF01430 Hsp33 protein XCR_3244 PF07715 TonB-dependent Receptor Plug Domain XCR_3244 PF00593 TonB dependent receptor XCR_3245 PF00440 Bacterial regulatory proteins, tetR family XCR_3247 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCR_3247 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCR_3247 PF09317 Domain of unknown function (DUF1974) XCR_3247 PF02770 Acyl-CoA dehydrogenase, middle domain XCR_3255 PF01597 Glycine cleavage H-protein XCR_3256 PF01571 Aminomethyltransferase folate-binding domain XCR_3256 PF08669 Glycine cleavage T-protein C-terminal barrel domain XCR_3258 PF16200 C-terminal region of band_7 XCR_3258 PF01145 SPFH domain / Band 7 family XCR_3259 PF02694 Uncharacterised BCR, YnfA/UPF0060 family XCR_3260 PF03819 MazG nucleotide pyrophosphohydrolase domain XCR_3261 PF00459 Inositol monophosphatase family XCR_3262 PF00293 NUDIX domain XCR_3263 PF00202 Aminotransferase class-III XCR_3264 PF04452 RNA methyltransferase XCR_3266 PF02685 Glucokinase XCR_3271 PF01476 LysM domain XCR_3271 PF00704 Glycosyl hydrolases family 18 XCR_3272 PF00728 Glycosyl hydrolase family 20, catalytic domain XCR_3272 PF07691 PA14 domain XCR_3272 PF02838 Glycosyl hydrolase family 20, domain 2 XCR_3276 PF07971 Glycosyl hydrolase family 92 XCR_3276 PF17678 Glycosyl hydrolase family 92 N-terminal domain XCR_3277 PF01301 Glycosyl hydrolases family 35 XCR_3280 PF03932 CutC family XCR_3281 PF01112 Asparaginase XCR_3282 PF00092 von Willebrand factor type A domain XCR_3282 PF12034 Domain of unknown function (DUF3520) XCR_3282 PF12450 von Willebrand factor XCR_3283 PF04542 Sigma-70 region 2 XCR_3283 PF08281 Sigma-70, region 4 XCR_3285 PF13302 Acetyltransferase (GNAT) domain XCR_3288 PF00072 Response regulator receiver domain XCR_3288 PF01627 Hpt domain XCR_3288 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_3288 PF01584 CheW-like domain XCR_3289 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_3289 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term XCR_3290 PF01584 CheW-like domain XCR_3291 PF00072 Response regulator receiver domain XCR_3292 PF00072 Response regulator receiver domain XCR_3293 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain XCR_3293 PF02951 Prokaryotic glutathione synthetase, N-terminal domain XCR_3295 PF03747 ADP-ribosylglycohydrolase XCR_3298 PF03747 ADP-ribosylglycohydrolase XCR_3299 PF00814 Glycoprotease family XCR_3301 PF13307 Helicase C-terminal domain XCR_3301 PF04851 Type III restriction enzyme, res subunit XCR_3303 PF14814 Bifunctional transglycosylase second domain XCR_3303 PF00905 Penicillin binding protein transpeptidase domain XCR_3303 PF00912 Transglycosylase XCR_3304 PF00535 Glycosyl transferase family 2 XCR_3306 PF13291 ACT domain XCR_3306 PF04607 Region found in RelA / SpoT proteins XCR_3306 PF02824 TGS domain XCR_3307 PF12706 Beta-lactamase superfamily domain XCR_3308 PF03070 TENA/THI-4/PQQC family XCR_3309 PF05402 Coenzyme PQQ synthesis protein D (PqqD) XCR_3310 PF04055 Radical SAM superfamily XCR_3310 PF13186 Iron-sulfur cluster-binding domain XCR_3314 PF02685 Glucokinase XCR_3316 PF00270 DEAD/DEAH box helicase XCR_3316 PF11898 Domain of unknown function (DUF3418) XCR_3316 PF04408 Helicase associated domain (HA2) XCR_3316 PF00271 Helicase conserved C-terminal domain XCR_3316 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold XCR_3317 PF00210 Ferritin-like domain XCR_3319 PF00270 DEAD/DEAH box helicase XCR_3319 PF00271 Helicase conserved C-terminal domain XCR_3319 PF00570 HRDC domain XCR_3319 PF16124 RecQ zinc-binding XCR_3319 PF09382 RQC domain XCR_3324 PF01479 S4 domain XCR_3324 PF00849 RNA pseudouridylate synthase XCR_3329 PF03466 LysR substrate binding domain XCR_3329 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_3330 PF00654 Voltage gated chloride channel XCR_3336 PF06508 Queuosine biosynthesis protein QueC XCR_3337 PF04055 Radical SAM superfamily XCR_3339 PF00691 OmpA family XCR_3340 PF04052 TolB amino-terminal domain XCR_3340 PF07676 WD40-like Beta Propeller Repeat XCR_3342 PF02472 Biopolymer transport protein ExbD/TolR XCR_3343 PF01618 MotA/TolQ/ExbB proton channel family XCR_3344 PF03061 Thioesterase superfamily XCR_3345 PF17864 RuvB AAA lid domain XCR_3345 PF05491 RuvB C-terminal winged helix domain XCR_3345 PF05496 Holliday junction DNA helicase RuvB P-loop domain XCR_3347 PF02705 K+ potassium transporter XCR_3348 PF07499 RuvA, C-terminal domain XCR_3348 PF01330 RuvA N terminal domain XCR_3349 PF02075 Crossover junction endodeoxyribonuclease RuvC XCR_3350 PF01709 Transcriptional regulator XCR_3353 PF01336 OB-fold nucleic acid binding domain XCR_3353 PF02938 GAD domain XCR_3353 PF00152 tRNA synthetases class II (D, K and N) XCR_3358 PF07690 Major Facilitator Superfamily XCR_3360 PF05116 Sucrose-6F-phosphate phosphohydrolase XCR_3360 PF00982 Glycosyltransferase family 20 XCR_3364 PF04185 Phosphoesterase family XCR_3364 PF05506 Domain of unknown function (DUF756) XCR_3365 PF07859 alpha/beta hydrolase fold XCR_3365 PF13472 GDSL-like Lipase/Acylhydrolase family XCR_3369 PF03466 LysR substrate binding domain XCR_3369 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_3371 PF00005 ABC transporter XCR_3371 PF12848 ABC transporter XCR_3372 PF07715 TonB-dependent Receptor Plug Domain XCR_3372 PF00593 TonB dependent receptor XCR_3374 PF00593 TonB dependent receptor XCR_3374 PF07715 TonB-dependent Receptor Plug Domain XCR_3376 PF00593 TonB dependent receptor XCR_3376 PF07715 TonB-dependent Receptor Plug Domain XCR_3377 PF00067 Cytochrome P450 XCR_3381 PF02254 TrkA-N domain XCR_3381 PF00999 Sodium/hydrogen exchanger family XCR_3387 PF07715 TonB-dependent Receptor Plug Domain XCR_3387 PF00593 TonB dependent receptor XCR_3387 PF07660 Secretin and TonB N terminus short domain XCR_3389 PF06276 Ferric iron reductase FhuF-like transporter XCR_3389 PF04183 IucA / IucC family XCR_3390 PF07690 Major Facilitator Superfamily XCR_3391 PF04183 IucA / IucC family XCR_3391 PF06276 Ferric iron reductase FhuF-like transporter XCR_3392 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain XCR_3392 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XCR_3393 PF02654 Cobalamin-5-phosphate synthase XCR_3396 PF02277 Phosphoribosyltransferase XCR_3397 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase XCR_3398 PF07685 CobB/CobQ-like glutamine amidotransferase domain XCR_3398 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XCR_3399 PF00155 Aminotransferase class I and II XCR_3400 PF17113 Regulatory signalling modulator protein AmpE XCR_3400 PF03186 CobD/Cbib protein XCR_3401 PF07685 CobB/CobQ-like glutamine amidotransferase domain XCR_3401 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XCR_3402 PF12557 Cob(I)alamin adenosyltransferase N terminal XCR_3402 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP XCR_3405 PF00593 TonB dependent receptor XCR_3405 PF07715 TonB-dependent Receptor Plug Domain XCR_3406 PF01053 Cys/Met metabolism PLP-dependent enzyme XCR_3408 PF00004 ATPase family associated with various cellular activities (AAA) XCR_3408 PF07724 AAA domain (Cdc48 subfamily) XCR_3408 PF17871 AAA lid domain XCR_3408 PF02861 Clp amino terminal domain, pathogenicity island component XCR_3408 PF10431 C-terminal, D2-small domain, of ClpB protein XCR_3409 PF00005 ABC transporter XCR_3411 PF01541 GIY-YIG catalytic domain XCR_3419 PF00593 TonB dependent receptor XCR_3419 PF07715 TonB-dependent Receptor Plug Domain XCR_3420 PF02358 Trehalose-phosphatase XCR_3421 PF00723 Glycosyl hydrolases family 15 XCR_3422 PF00982 Glycosyltransferase family 20 XCR_3424 PF01011 PQQ enzyme repeat XCR_3425 PF00672 HAMP domain XCR_3425 PF02203 Tar ligand binding domain homologue XCR_3425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_3429 PF00849 RNA pseudouridylate synthase XCR_3431 PF13525 Outer membrane lipoprotein XCR_3433 PF00795 Carbon-nitrogen hydrolase XCR_3433 PF02540 NAD synthase XCR_3437 PF00549 CoA-ligase XCR_3437 PF02629 CoA binding domain XCR_3438 PF08442 ATP-grasp domain XCR_3438 PF00549 CoA-ligase XCR_3439 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_3439 PF00512 His Kinase A (phospho-acceptor) domain XCR_3440 PF00158 Sigma-54 interaction domain XCR_3440 PF02954 Bacterial regulatory protein, Fis family XCR_3440 PF00072 Response regulator receiver domain XCR_3444 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XCR_3444 PF00437 Type II/IV secretion system protein XCR_3445 PF00482 Type II secretion system (T2SS), protein F XCR_3446 PF00482 Type II secretion system (T2SS), protein F XCR_3447 PF01478 Type IV leader peptidase family XCR_3447 PF06750 Bacterial Peptidase A24 N-terminal domain XCR_3448 PF01121 Dephospho-CoA kinase XCR_3452 PF00989 PAS fold XCR_3452 PF00512 His Kinase A (phospho-acceptor) domain XCR_3452 PF11808 Phosphate regulon sensor protein PhoR XCR_3452 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_3453 PF00072 Response regulator receiver domain XCR_3453 PF00486 Transcriptional regulatory protein, C terminal XCR_3455 PF08443 RimK-like ATP-grasp domain XCR_3455 PF18030 RimK PreATP-grasp domain XCR_3456 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCR_3456 PF00128 Alpha amylase, catalytic domain XCR_3471 PF04002 RadC-like JAB domain XCR_3476 PF10544 T5orf172 domain XCR_3485 PF00657 GDSL-like Lipase/Acylhydrolase XCR_3485 PF03797 Autotransporter beta-domain XCR_3488 PF05690 Thiazole biosynthesis protein ThiG XCR_3489 PF02390 Putative methyltransferase XCR_3490 PF02080 TrkA-C domain XCR_3490 PF03600 Citrate transporter XCR_3494 PF01557 Fumarylacetoacetate (FAA) hydrolase family XCR_3495 PF01741 Large-conductance mechanosensitive channel, MscL XCR_3497 PF00356 Bacterial regulatory proteins, lacI family XCR_3498 PF00041 Fibronectin type III domain XCR_3498 PF01341 Glycosyl hydrolases family 6 XCR_3498 PF00553 Cellulose binding domain XCR_3500 PF02929 Beta galactosidase small chain XCR_3500 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XCR_3500 PF16353 Domain of unknown function(DUF4981) XCR_3500 PF02837 Glycosyl hydrolases family 2, sugar binding domain XCR_3500 PF00703 Glycosyl hydrolases family 2 XCR_3501 PF10566 Glycoside hydrolase 97 XCR_3501 PF14508 Glycosyl-hydrolase 97 N-terminal XCR_3501 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation XCR_3503 PF00135 Carboxylesterase family XCR_3504 PF00588 SpoU rRNA Methylase family XCR_3504 PF08032 RNA 2'-O ribose methyltransferase substrate binding XCR_3505 PF01235 Sodium:alanine symporter family XCR_3507 PF01433 Peptidase family M1 domain XCR_3507 PF11838 ERAP1-like C-terminal domain XCR_3508 PF00873 AcrB/AcrD/AcrF family XCR_3509 PF00529 HlyD membrane-fusion protein of T1SS XCR_3509 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCR_3510 PF00009 Elongation factor Tu GTP binding domain XCR_3511 PF01507 Phosphoadenosine phosphosulfate reductase family XCR_3512 PF00258 Flavodoxin XCR_3512 PF00667 FAD binding domain XCR_3512 PF00175 Oxidoreductase NAD-binding domain XCR_3513 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XCR_3513 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XCR_3514 PF01507 Phosphoadenosine phosphosulfate reductase family XCR_3518 PF00072 Response regulator receiver domain XCR_3518 PF01627 Hpt domain XCR_3518 PF00512 His Kinase A (phospho-acceptor) domain XCR_3518 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_3518 PF00672 HAMP domain XCR_3521 PF03466 LysR substrate binding domain XCR_3521 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_3522 PF10414 Sirohaem synthase dimerisation region XCR_3522 PF14824 Sirohaem biosynthesis protein central XCR_3522 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XCR_3523 PF00291 Pyridoxal-phosphate dependent enzyme XCR_3525 PF01661 Macro domain XCR_3526 PF00274 Fructose-bisphosphate aldolase class-I XCR_3528 PF00224 Pyruvate kinase, barrel domain XCR_3528 PF02887 Pyruvate kinase, alpha/beta domain XCR_3530 PF00162 Phosphoglycerate kinase XCR_3534 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XCR_3534 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain XCR_3537 PF03922 OmpW family XCR_3539 PF00753 Metallo-beta-lactamase superfamily XCR_3539 PF04273 Putative phosphatase (DUF442) XCR_3541 PF00528 Binding-protein-dependent transport system inner membrane component XCR_3542 PF00005 ABC transporter XCR_3542 PF03459 TOBE domain XCR_3546 PF03965 Penicillinase repressor XCR_3550 PF01476 LysM domain XCR_3550 PF03734 L,D-transpeptidase catalytic domain XCR_3551 PF04225 Opacity-associated protein A LysM-like domain XCR_3551 PF01551 Peptidase family M23 XCR_3555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_3555 PF03466 LysR substrate binding domain XCR_3556 PF00593 TonB dependent receptor XCR_3556 PF07715 TonB-dependent Receptor Plug Domain XCR_3558 PF02779 Transketolase, pyrimidine binding domain XCR_3558 PF02780 Transketolase, C-terminal domain XCR_3558 PF00456 Transketolase, thiamine diphosphate binding domain XCR_3559 PF00375 Sodium:dicarboxylate symporter family XCR_3567 PF17863 AAA lid domain XCR_3567 PF07726 ATPase family associated with various cellular activities (AAA) XCR_3568 PF07660 Secretin and TonB N terminus short domain XCR_3568 PF00263 Bacterial type II and III secretion system protein XCR_3568 PF11741 AMIN domain XCR_3568 PF03958 Bacterial type II/III secretion system short domain XCR_3573 PF00905 Penicillin binding protein transpeptidase domain XCR_3573 PF00912 Transglycosylase XCR_3573 PF17092 Penicillin-binding protein OB-like domain XCR_3575 PF00285 Citrate synthase, C-terminal domain XCR_3576 PF01197 Ribosomal protein L31 XCR_3577 PF01156 Inosine-uridine preferring nucleoside hydrolase XCR_3578 PF17191 RecG wedge domain XCR_3578 PF00271 Helicase conserved C-terminal domain XCR_3578 PF00270 DEAD/DEAH box helicase XCR_3579 PF01042 Endoribonuclease L-PSP XCR_3580 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus XCR_3580 PF08666 SAF domain XCR_3581 PF03573 outer membrane porin, OprD family XCR_3582 PF13378 Enolase C-terminal domain-like XCR_3582 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XCR_3583 PF07690 Major Facilitator Superfamily XCR_3584 PF00171 Aldehyde dehydrogenase family XCR_3585 PF00701 Dihydrodipicolinate synthetase family XCR_3586 PF03466 LysR substrate binding domain XCR_3586 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_3587 PF02824 TGS domain XCR_3587 PF04607 Region found in RelA / SpoT proteins XCR_3587 PF13291 ACT domain XCR_3588 PF01192 RNA polymerase Rpb6 XCR_3590 PF00625 Guanylate kinase XCR_3591 PF08340 Domain of unknown function (DUF1732) XCR_3591 PF03755 YicC-like family, N-terminal region XCR_3592 PF03725 3' exoribonuclease family, domain 2 XCR_3592 PF01138 3' exoribonuclease family, domain 1 XCR_3593 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XCR_3594 PF01725 Ham1 family XCR_3595 PF04055 Radical SAM superfamily XCR_3595 PF06969 HemN C-terminal domain XCR_3598 PF00557 Metallopeptidase family M24 XCR_3600 PF00557 Metallopeptidase family M24 XCR_3600 PF05195 Aminopeptidase P, N-terminal domain XCR_3601 PF03695 Uncharacterised protein family (UPF0149) XCR_3603 PF05164 Cell division protein ZapA XCR_3604 PF01812 5-formyltetrahydrofolate cyclo-ligase family XCR_3606 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) XCR_3608 PF13369 Transglutaminase-like superfamily XCR_3609 PF00301 Rubredoxin XCR_3610 PF02581 Thiamine monophosphate synthase XCR_3614 PF00202 Aminotransferase class-III XCR_3615 PF17874 MalT-like TPR region XCR_3615 PF00196 Bacterial regulatory proteins, luxR family XCR_3616 PF00127 Copper binding proteins, plastocyanin/azurin family XCR_3617 PF00155 Aminotransferase class I and II XCR_3619 PF00034 Cytochrome c XCR_3619 PF13442 Cytochrome C oxidase, cbb3-type, subunit III XCR_3620 PF01593 Flavin containing amine oxidoreductase XCR_3624 PF00202 Aminotransferase class-III XCR_3625 PF00520 Ion transport protein XCR_3625 PF00027 Cyclic nucleotide-binding domain XCR_3630 PF01569 PAP2 superfamily XCR_3631 PF01062 Bestrophin, RFP-TM, chloride channel XCR_3633 PF02875 Mur ligase family, glutamate ligase domain XCR_3633 PF01225 Mur ligase family, catalytic domain XCR_3633 PF08245 Mur ligase middle domain XCR_3636 PF00365 Phosphofructokinase XCR_3641 PF03030 Inorganic H+ pyrophosphatase XCR_3643 PF00719 Inorganic pyrophosphatase XCR_3645 PF00593 TonB dependent receptor XCR_3645 PF07715 TonB-dependent Receptor Plug Domain XCR_3646 PF12833 Helix-turn-helix domain XCR_3649 PF01964 Radical SAM ThiC family XCR_3649 PF13667 ThiC-associated domain XCR_3651 PF00326 Prolyl oligopeptidase family XCR_3651 PF07676 WD40-like Beta Propeller Repeat XCR_3652 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_3652 PF00672 HAMP domain XCR_3655 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain XCR_3655 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain XCR_3656 PF00205 Thiamine pyrophosphate enzyme, central domain XCR_3656 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XCR_3656 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XCR_3658 PF00291 Pyridoxal-phosphate dependent enzyme XCR_3659 PF00682 HMGL-like XCR_3659 PF08502 LeuA allosteric (dimerisation) domain XCR_3661 PF00180 Isocitrate/isopropylmalate dehydrogenase XCR_3662 PF08241 Methyltransferase domain XCR_3663 PF00694 Aconitase C-terminal domain XCR_3664 PF00330 Aconitase family (aconitate hydratase) XCR_3665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_3666 PF13188 PAS domain XCR_3666 PF00990 Diguanylate cyclase, GGDEF domain XCR_3666 PF03707 Bacterial signalling protein N terminal repeat XCR_3666 PF00563 EAL domain XCR_3669 PF02321 Outer membrane efflux protein XCR_3670 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) XCR_3672 PF03279 Bacterial lipid A biosynthesis acyltransferase XCR_3678 PF01515 Phosphate acetyl/butaryl transferase XCR_3678 PF00390 Malic enzyme, N-terminal domain XCR_3678 PF03949 Malic enzyme, NAD binding domain XCR_3679 PF00375 Sodium:dicarboxylate symporter family XCR_3682 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_3682 PF00512 His Kinase A (phospho-acceptor) domain XCR_3684 PF00072 Response regulator receiver domain XCR_3684 PF00196 Bacterial regulatory proteins, luxR family XCR_3687 PF00512 His Kinase A (phospho-acceptor) domain XCR_3687 PF08521 Two-component sensor kinase N-terminal XCR_3687 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_3688 PF00486 Transcriptional regulatory protein, C terminal XCR_3688 PF00072 Response regulator receiver domain XCR_3691 PF03600 Citrate transporter XCR_3692 PF00106 short chain dehydrogenase XCR_3693 PF00356 Bacterial regulatory proteins, lacI family XCR_3697 PF00128 Alpha amylase, catalytic domain XCR_3700 PF03193 RsgA GTPase XCR_3701 PF00155 Aminotransferase class I and II XCR_3705 PF01522 Polysaccharide deacetylase XCR_3706 PF00462 Glutaredoxin XCR_3709 PF01979 Amidohydrolase family XCR_3710 PF01979 Amidohydrolase family XCR_3718 PF02645 Uncharacterised protein, DegV family COG1307 XCR_3720 PF00892 EamA-like transporter family XCR_3721 PF02567 Phenazine biosynthesis-like protein XCR_3722 PF00155 Aminotransferase class I and II XCR_3722 PF00392 Bacterial regulatory proteins, gntR family XCR_3723 PF00756 Putative esterase XCR_3724 PF04828 Glutathione-dependent formaldehyde-activating enzyme XCR_3725 PF00107 Zinc-binding dehydrogenase XCR_3725 PF08240 Alcohol dehydrogenase GroES-like domain XCR_3726 PF02583 Metal-sensitive transcriptional repressor XCR_3727 PF03466 LysR substrate binding domain XCR_3727 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_3731 PF00072 Response regulator receiver domain XCR_3731 PF00486 Transcriptional regulatory protein, C terminal XCR_3732 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_3732 PF00512 His Kinase A (phospho-acceptor) domain XCR_3732 PF00672 HAMP domain XCR_3733 PF04107 Glutamate-cysteine ligase family 2(GCS2) XCR_3735 PF01926 50S ribosome-binding GTPase XCR_3736 PF00034 Cytochrome c XCR_3738 PF01323 DSBA-like thioredoxin domain XCR_3740 PF02028 BCCT, betaine/carnitine/choline family transporter XCR_3741 PF00171 Aldehyde dehydrogenase family XCR_3742 PF00732 GMC oxidoreductase XCR_3742 PF05199 GMC oxidoreductase XCR_3743 PF07715 TonB-dependent Receptor Plug Domain XCR_3743 PF00593 TonB dependent receptor XCR_3744 PF01464 Transglycosylase SLT domain XCR_3744 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain XCR_3745 PF12627 Probable RNA and SrmB- binding site of polymerase A XCR_3745 PF01743 Poly A polymerase head domain XCR_3745 PF01966 HD domain XCR_3750 PF01979 Amidohydrolase family XCR_3751 PF01380 SIS domain XCR_3752 PF00356 Bacterial regulatory proteins, lacI family XCR_3753 PF07690 Major Facilitator Superfamily XCR_3754 PF00392 Bacterial regulatory proteins, gntR family XCR_3754 PF07702 UTRA domain XCR_3758 PF03934 Type II secretion system (T2SS), protein K XCR_3759 PF07963 Prokaryotic N-terminal methylation motif XCR_3759 PF11612 Type II secretion system (T2SS), protein J XCR_3760 PF07963 Prokaryotic N-terminal methylation motif XCR_3760 PF02501 Type II secretion system (T2SS), protein I XCR_3762 PF07963 Prokaryotic N-terminal methylation motif XCR_3762 PF08334 Type II secretion system (T2SS), protein G XCR_3763 PF00482 Type II secretion system (T2SS), protein F XCR_3764 PF00437 Type II/IV secretion system protein XCR_3765 PF03958 Bacterial type II/III secretion system short domain XCR_3765 PF00263 Bacterial type II and III secretion system protein XCR_3773 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XCR_3774 PF00512 His Kinase A (phospho-acceptor) domain XCR_3774 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_3775 PF00072 Response regulator receiver domain XCR_3776 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_3776 PF00512 His Kinase A (phospho-acceptor) domain XCR_3776 PF01590 GAF domain XCR_3776 PF08446 PAS fold XCR_3776 PF00360 Phytochrome region XCR_3777 PF04972 BON domain XCR_3778 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XCR_3778 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XCR_3779 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XCR_3779 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain XCR_3786 PF01467 Cytidylyltransferase-like XCR_3786 PF00293 NUDIX domain XCR_3788 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_3788 PF03466 LysR substrate binding domain XCR_3790 PF11818 C-terminal domain of tail specific protease (DUF3340) XCR_3790 PF00595 PDZ domain XCR_3790 PF03572 Peptidase family S41 XCR_3790 PF17804 Tail specific protease N-terminal domain XCR_3791 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family XCR_3791 PF04055 Radical SAM superfamily XCR_3792 PF03099 Biotin/lipoate A/B protein ligase family XCR_3793 PF04359 Protein of unknown function (DUF493) XCR_3796 PF00768 D-alanyl-D-alanine carboxypeptidase XCR_3796 PF07943 Penicillin-binding protein 5, C-terminal domain XCR_3797 PF05036 Sporulation related domain XCR_3797 PF03330 Lytic transglycolase XCR_3798 PF13406 Transglycosylase SLT domain XCR_3799 PF00295 Glycosyl hydrolases family 28 XCR_3801 PF02534 Type IV secretory system Conjugative DNA transfer XCR_3802 PF01098 Cell cycle protein XCR_3803 PF00905 Penicillin binding protein transpeptidase domain XCR_3803 PF03717 Penicillin-binding Protein dimerisation domain XCR_3805 PF04085 rod shape-determining protein MreC XCR_3808 PF00294 pfkB family carbohydrate kinase XCR_3809 PF02954 Bacterial regulatory protein, Fis family XCR_3809 PF00158 Sigma-54 interaction domain XCR_3809 PF01590 GAF domain XCR_3810 PF07660 Secretin and TonB N terminus short domain XCR_3810 PF00593 TonB dependent receptor XCR_3810 PF07715 TonB-dependent Receptor Plug Domain XCR_3811 PF00107 Zinc-binding dehydrogenase XCR_3811 PF08240 Alcohol dehydrogenase GroES-like domain XCR_3814 PF00497 Bacterial extracellular solute-binding proteins, family 3 XCR_3815 PF13360 PQQ-like domain XCR_3820 PF01433 Peptidase family M1 domain XCR_3820 PF11838 ERAP1-like C-terminal domain XCR_3821 PF03707 Bacterial signalling protein N terminal repeat XCR_3821 PF00990 Diguanylate cyclase, GGDEF domain XCR_3821 PF00563 EAL domain XCR_3822 PF01209 ubiE/COQ5 methyltransferase family XCR_3824 PF13533 Biotin-lipoyl like XCR_3825 PF13673 Acetyltransferase (GNAT) domain XCR_3828 PF10431 C-terminal, D2-small domain, of ClpB protein XCR_3828 PF07724 AAA domain (Cdc48 subfamily) XCR_3828 PF00004 ATPase family associated with various cellular activities (AAA) XCR_3829 PF00227 Proteasome subunit XCR_3830 PF13276 HTH-like domain XCR_3830 PF13683 Integrase core domain XCR_3831 PF01527 Transposase XCR_3832 PF02899 Phage integrase, N-terminal SAM-like domain XCR_3832 PF00589 Phage integrase family XCR_3834 PF01678 Diaminopimelate epimerase XCR_3836 PF04304 Protein of unknown function (DUF454) XCR_3837 PF00326 Prolyl oligopeptidase family XCR_3837 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XCR_3839 PF00155 Aminotransferase class I and II XCR_3841 PF00326 Prolyl oligopeptidase family XCR_3841 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XCR_3847 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain XCR_3847 PF03900 Porphobilinogen deaminase, C-terminal domain XCR_3848 PF04397 LytTr DNA-binding domain XCR_3848 PF00072 Response regulator receiver domain XCR_3849 PF06580 Histidine kinase XCR_3849 PF07694 5TMR of 5TMR-LYT XCR_3851 PF13632 Glycosyl transferase family group 2 XCR_3853 PF03600 Citrate transporter XCR_3853 PF02080 TrkA-C domain XCR_3856 PF00593 TonB dependent receptor XCR_3856 PF07715 TonB-dependent Receptor Plug Domain XCR_3856 PF07660 Secretin and TonB N terminus short domain XCR_3857 PF08448 PAS fold XCR_3857 PF00990 Diguanylate cyclase, GGDEF domain XCR_3858 PF01740 STAS domain XCR_3858 PF00916 Sulfate permease family XCR_3859 PF00553 Cellulose binding domain XCR_3859 PF00150 Cellulase (glycosyl hydrolase family 5) XCR_3861 PF02203 Tar ligand binding domain homologue XCR_3861 PF00672 HAMP domain XCR_3861 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_3863 PF08448 PAS fold XCR_3863 PF08447 PAS fold XCR_3863 PF05231 MASE1 XCR_3863 PF00990 Diguanylate cyclase, GGDEF domain XCR_3863 PF00563 EAL domain XCR_3863 PF13426 PAS domain XCR_3868 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XCR_3868 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XCR_3871 PF01204 Trehalase XCR_3874 PF01544 CorA-like Mg2+ transporter protein XCR_3875 PF00324 Amino acid permease XCR_3876 PF03330 Lytic transglycolase XCR_3878 PF00497 Bacterial extracellular solute-binding proteins, family 3 XCR_3879 PF00892 EamA-like transporter family XCR_3887 PF02082 Transcriptional regulator XCR_3888 PF00990 Diguanylate cyclase, GGDEF domain XCR_3888 PF05230 MASE2 domain XCR_3890 PF07759 Protein of unknown function (DUF1615) XCR_3891 PF00326 Prolyl oligopeptidase family XCR_3891 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XCR_3893 PF03176 MMPL family XCR_3893 PF12823 Domain of unknown function (DUF3817) XCR_3901 PF01433 Peptidase family M1 domain XCR_3901 PF11838 ERAP1-like C-terminal domain XCR_3911 PF01609 Transposase DDE domain XCR_3911 PF05598 Transposase domain (DUF772) XCR_3917 PF01527 Transposase XCR_3918 PF13683 Integrase core domain XCR_3918 PF13276 HTH-like domain XCR_3927 PF00456 Transketolase, thiamine diphosphate binding domain XCR_3927 PF17831 Pyruvate dehydrogenase E1 component middle domain XCR_3928 PF07745 Glycosyl hydrolase family 53 XCR_3935 PF00392 Bacterial regulatory proteins, gntR family XCR_3935 PF07729 FCD domain XCR_3937 PF02801 Beta-ketoacyl synthase, C-terminal domain XCR_3937 PF00550 Phosphopantetheine attachment site XCR_3937 PF08659 KR domain XCR_3937 PF16197 Ketoacyl-synthetase C-terminal extension XCR_3937 PF00698 Acyl transferase domain XCR_3937 PF00109 Beta-ketoacyl synthase, N-terminal domain XCR_3939 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase XCR_3940 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG XCR_3942 PF01039 Carboxyl transferase domain XCR_3943 PF06857 Malonate decarboxylase delta subunit (MdcD) XCR_3944 PF16957 Malonate decarboxylase, alpha subunit, transporter XCR_3945 PF03551 Transcriptional regulator PadR-like family XCR_3945 PF13847 Methyltransferase domain XCR_3947 PF04264 YceI-like domain XCR_3948 PF00881 Nitroreductase family XCR_3954 PF02129 X-Pro dipeptidyl-peptidase (S15 family) XCR_3955 PF02129 X-Pro dipeptidyl-peptidase (S15 family) XCR_3957 PF03710 Glutamate-ammonia ligase adenylyltransferase XCR_3957 PF08335 GlnD PII-uridylyltransferase XCR_3961 PF07715 TonB-dependent Receptor Plug Domain XCR_3961 PF07660 Secretin and TonB N terminus short domain XCR_3961 PF00593 TonB dependent receptor XCR_3963 PF04773 FecR protein XCR_3963 PF16220 Domain of unknown function (DUF4880) XCR_3966 PF08450 SMP-30/Gluconolactonase/LRE-like region XCR_3969 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain XCR_3969 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain XCR_3971 PF00793 DAHP synthetase I family XCR_3973 PF07804 HipA-like C-terminal domain XCR_3974 PF00593 TonB dependent receptor XCR_3974 PF07715 TonB-dependent Receptor Plug Domain XCR_3977 PF01738 Dienelactone hydrolase family XCR_3979 PF00118 TCP-1/cpn60 chaperonin family XCR_3980 PF00166 Chaperonin 10 Kd subunit XCR_3982 PF04231 Endonuclease I XCR_3983 PF03091 CutA1 divalent ion tolerance protein XCR_3984 PF02683 Cytochrome C biogenesis protein transmembrane region XCR_3984 PF11412 Disulphide bond corrector protein DsbC XCR_3985 PF01220 Dehydroquinase class II XCR_3986 PF00364 Biotin-requiring enzyme XCR_3988 PF02785 Biotin carboxylase C-terminal domain XCR_3988 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XCR_3988 PF00289 Biotin carboxylase, N-terminal domain XCR_3996 PF01381 Helix-turn-helix XCR_3999 PF02954 Bacterial regulatory protein, Fis family XCR_4000 PF00818 Ice nucleation protein repeat XCR_4000 PF00818 Ice nucleation protein repeat XCR_4006 PF00782 Dual specificity phosphatase, catalytic domain XCR_4007 PF12146 Serine aminopeptidase, S33 XCR_4007 PF12147 Putative methyltransferase XCR_4008 PF01066 CDP-alcohol phosphatidyltransferase XCR_4009 PF02142 MGS-like domain XCR_4009 PF01808 AICARFT/IMPCHase bienzyme XCR_4010 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain XCR_4010 PF02844 Phosphoribosylglycinamide synthetase, N domain XCR_4010 PF02843 Phosphoribosylglycinamide synthetase, C domain XCR_4011 PF12805 FUSC-like inner membrane protein yccS XCR_4012 PF07690 Major Facilitator Superfamily XCR_4019 PF03186 CobD/Cbib protein XCR_4019 PF17113 Regulatory signalling modulator protein AmpE XCR_4020 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain XCR_4020 PF09297 NADH pyrophosphatase zinc ribbon domain XCR_4020 PF00293 NUDIX domain XCR_4021 PF01521 Iron-sulphur cluster biosynthesis XCR_4026 PF00072 Response regulator receiver domain XCR_4026 PF00486 Transcriptional regulatory protein, C terminal XCR_4027 PF00672 HAMP domain XCR_4027 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_4027 PF00512 His Kinase A (phospho-acceptor) domain XCR_4027 PF01627 Hpt domain XCR_4027 PF00072 Response regulator receiver domain XCR_4027 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XCR_4029 PF00210 Ferritin-like domain XCR_4031 PF00293 NUDIX domain XCR_4035 PF00380 Ribosomal protein S9/S16 XCR_4036 PF00572 Ribosomal protein L13 XCR_4037 PF03232 Ubiquinone biosynthesis protein COQ7 XCR_4038 PF00893 Small Multidrug Resistance protein XCR_4039 PF02675 S-adenosylmethionine decarboxylase XCR_4040 PF00027 Cyclic nucleotide-binding domain XCR_4040 PF00325 Bacterial regulatory proteins, crp family XCR_4042 PF00218 Indole-3-glycerol phosphate synthase XCR_4043 PF00591 Glycosyl transferase family, a/b domain XCR_4043 PF02885 Glycosyl transferase family, helical bundle domain XCR_4044 PF01613 Flavin reductase like domain XCR_4045 PF00117 Glutamine amidotransferase class-I XCR_4047 PF00155 Aminotransferase class I and II XCR_4048 PF00425 chorismate binding enzyme XCR_4048 PF04715 Anthranilate synthase component I, N terminal region XCR_4049 PF00781 Diacylglycerol kinase catalytic domain XCR_4051 PF00834 Ribulose-phosphate 3 epimerase family XCR_4053 PF01556 DnaJ C terminal domain XCR_4053 PF00226 DnaJ domain XCR_4053 PF00684 DnaJ central domain XCR_4054 PF01259 SAICAR synthetase XCR_4061 PF13244 Domain of unknown function (DUF4040) XCR_4061 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XCR_4061 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter XCR_4061 PF00361 Proton-conducting membrane transporter XCR_4062 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XCR_4063 PF00361 Proton-conducting membrane transporter XCR_4065 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) XCR_4066 PF03334 Na+/H+ antiporter subunit XCR_4071 PF04209 homogentisate 1,2-dioxygenase XCR_4073 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XCR_4074 PF01047 MarR family XCR_4076 PF00854 POT family XCR_4077 PF03301 Tryptophan 2,3-dioxygenase XCR_4080 PF00676 Dehydrogenase E1 component XCR_4081 PF02780 Transketolase, C-terminal domain XCR_4081 PF02779 Transketolase, pyrimidine binding domain XCR_4083 PF00364 Biotin-requiring enzyme XCR_4083 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XCR_4083 PF02817 e3 binding domain XCR_4084 PF01609 Transposase DDE domain XCR_4084 PF05598 Transposase domain (DUF772) XCR_4085 PF01609 Transposase DDE domain XCR_4085 PF05598 Transposase domain (DUF772) XCR_4086 PF00270 DEAD/DEAH box helicase XCR_4086 PF00271 Helicase conserved C-terminal domain XCR_4089 PF00873 AcrB/AcrD/AcrF family XCR_4091 PF00440 Bacterial regulatory proteins, tetR family XCR_4093 PF02321 Outer membrane efflux protein XCR_4094 PF06903 VirK protein XCR_4097 PF13460 NAD(P)H-binding XCR_4098 PF00128 Alpha amylase, catalytic domain XCR_4098 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCR_4100 PF00128 Alpha amylase, catalytic domain XCR_4101 PF02446 4-alpha-glucanotransferase XCR_4102 PF11941 Domain of unknown function (DUF3459) XCR_4102 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCR_4102 PF00128 Alpha amylase, catalytic domain XCR_4103 PF02806 Alpha amylase, C-terminal all-beta domain XCR_4103 PF00128 Alpha amylase, catalytic domain XCR_4103 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCR_4104 PF00534 Glycosyl transferases group 1 XCR_4104 PF08323 Starch synthase catalytic domain XCR_4105 PF03707 Bacterial signalling protein N terminal repeat XCR_4105 PF00990 Diguanylate cyclase, GGDEF domain XCR_4105 PF00563 EAL domain XCR_4106 PF05661 Protein of unknown function (DUF808) XCR_4107 PF03109 ABC1 family XCR_4109 PF00884 Sulfatase XCR_4110 PF12794 Mechanosensitive ion channel inner membrane domain 1 XCR_4110 PF12795 Mechanosensitive ion channel porin domain XCR_4110 PF00924 Mechanosensitive ion channel XCR_4113 PF13683 Integrase core domain XCR_4113 PF13276 HTH-like domain XCR_4114 PF01527 Transposase XCR_4116 PF00593 TonB dependent receptor XCR_4116 PF07715 TonB-dependent Receptor Plug Domain XCR_4118 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XCR_4118 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XCR_4119 PF00593 TonB dependent receptor XCR_4119 PF07715 TonB-dependent Receptor Plug Domain XCR_4122 PF01040 UbiA prenyltransferase family XCR_4124 PF04055 Radical SAM superfamily XCR_4124 PF06968 Biotin and Thiamin Synthesis associated domain XCR_4125 PF00155 Aminotransferase class I and II XCR_4127 PF12697 Alpha/beta hydrolase family XCR_4131 PF13649 Methyltransferase domain XCR_4135 PF00291 Pyridoxal-phosphate dependent enzyme XCR_4135 PF13291 ACT domain XCR_4137 PF13932 GidA associated domain XCR_4137 PF01134 Glucose inhibited division protein A XCR_4138 PF10677 Protein of unknown function (DUF2490) XCR_4139 PF07859 alpha/beta hydrolase fold XCR_4142 PF01614 Bacterial transcriptional regulator XCR_4142 PF09339 IclR helix-turn-helix domain XCR_4144 PF02627 Carboxymuconolactone decarboxylase family XCR_4145 PF12146 Serine aminopeptidase, S33 XCR_4146 PF10397 Adenylosuccinate lyase C-terminus XCR_4146 PF00206 Lyase XCR_4147 PF00775 Dioxygenase XCR_4147 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal XCR_4148 PF00775 Dioxygenase XCR_4148 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal XCR_4149 PF00108 Thiolase, N-terminal domain XCR_4149 PF02803 Thiolase, C-terminal domain XCR_4150 PF01144 Coenzyme A transferase XCR_4151 PF01144 Coenzyme A transferase XCR_4152 PF00355 Rieske [2Fe-2S] domain XCR_4154 PF08220 DeoR-like helix-turn-helix domain XCR_4154 PF00455 DeoR C terminal sensor domain XCR_4155 PF01266 FAD dependent oxidoreductase XCR_4155 PF16901 C-terminal domain of alpha-glycerophosphate oxidase XCR_4156 PF00230 Major intrinsic protein XCR_4157 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XCR_4157 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XCR_4159 PF01494 FAD binding domain XCR_4161 PF00171 Aldehyde dehydrogenase family XCR_4165 PF01966 HD domain XCR_4165 PF11871 Domain of unknown function (DUF3391) XCR_4167 PF07690 Major Facilitator Superfamily XCR_4169 PF00132 Bacterial transferase hexapeptide (six repeats) XCR_4172 PF03692 Putative zinc- or iron-chelating domain XCR_4173 PF00920 Dehydratase family XCR_4174 PF00589 Phage integrase family XCR_4174 PF13495 Phage integrase, N-terminal SAM-like domain XCR_4183 PF02203 Tar ligand binding domain homologue XCR_4183 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_4183 PF00672 HAMP domain XCR_4185 PF01638 HxlR-like helix-turn-helix XCR_4186 PF05368 NmrA-like family XCR_4190 PF01717 Cobalamin-independent synthase, Catalytic domain XCR_4190 PF08267 Cobalamin-independent synthase, N-terminal domain XCR_4192 PF03358 NADPH-dependent FMN reductase XCR_4193 PF03466 LysR substrate binding domain XCR_4193 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_4194 PF02219 Methylenetetrahydrofolate reductase XCR_4196 PF00551 Formyl transferase XCR_4200 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XCR_4200 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XCR_4201 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XCR_4202 PF02146 Sir2 family XCR_4207 PF07690 Major Facilitator Superfamily XCR_4208 PF03466 LysR substrate binding domain XCR_4208 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_4210 PF01026 TatD related DNase XCR_4212 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_4212 PF03466 LysR substrate binding domain XCR_4213 PF00355 Rieske [2Fe-2S] domain XCR_4214 PF00111 2Fe-2S iron-sulfur cluster binding domain XCR_4214 PF00175 Oxidoreductase NAD-binding domain XCR_4217 PF00860 Permease family XCR_4219 PF01156 Inosine-uridine preferring nucleoside hydrolase XCR_4220 PF01425 Amidase XCR_4222 PF13091 PLD-like domain XCR_4223 PF03372 Endonuclease/Exonuclease/phosphatase family XCR_4224 PF07690 Major Facilitator Superfamily XCR_4225 PF03466 LysR substrate binding domain XCR_4225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_4226 PF01546 Peptidase family M20/M25/M40 XCR_4226 PF07687 Peptidase dimerisation domain XCR_4227 PF00266 Aminotransferase class-V XCR_4231 PF13454 FAD-NAD(P)-binding XCR_4232 PF00576 HIUase/Transthyretin family XCR_4233 PF07308 Protein of unknown function (DUF1456) XCR_4234 PF00672 HAMP domain XCR_4234 PF02203 Tar ligand binding domain homologue XCR_4234 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCR_4235 PF04408 Helicase associated domain (HA2) XCR_4235 PF08482 ATP-dependent helicase C-terminal XCR_4235 PF00271 Helicase conserved C-terminal domain XCR_4235 PF00270 DEAD/DEAH box helicase XCR_4237 PF00849 RNA pseudouridylate synthase XCR_4241 PF00107 Zinc-binding dehydrogenase XCR_4241 PF16884 N-terminal domain of oxidoreductase XCR_4242 PF00248 Aldo/keto reductase family XCR_4245 PF07859 alpha/beta hydrolase fold XCR_4247 PF02566 OsmC-like protein XCR_4248 PF01047 MarR family XCR_4250 PF03969 AFG1-like ATPase XCR_4255 PF02492 CobW/HypB/UreG, nucleotide-binding domain XCR_4255 PF07683 Cobalamin synthesis protein cobW C-terminal domain XCR_4259 PF13442 Cytochrome C oxidase, cbb3-type, subunit III XCR_4267 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCR_4267 PF02770 Acyl-CoA dehydrogenase, middle domain XCR_4267 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCR_4268 PF01039 Carboxyl transferase domain XCR_4270 PF02785 Biotin carboxylase C-terminal domain XCR_4270 PF00364 Biotin-requiring enzyme XCR_4270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XCR_4270 PF00289 Biotin carboxylase, N-terminal domain XCR_4271 PF00326 Prolyl oligopeptidase family XCR_4274 PF08448 PAS fold XCR_4274 PF00990 Diguanylate cyclase, GGDEF domain XCR_4275 PF00463 Isocitrate lyase family XCR_4276 PF01274 Malate synthase XCR_4278 PF01867 CRISPR associated protein Cas1 XCR_4279 PF18019 HD domain XCR_4280 PF09611 CRISPR-associated protein (Cas_Csy1) XCR_4281 PF09614 CRISPR-associated protein (Cas_Csy2) XCR_4282 PF09615 CRISPR-associated protein (Cas_Csy3) XCR_4283 PF09618 CRISPR-associated protein (Cas_Csy4) XCR_4292 PF10502 Signal peptidase, peptidase S26 XCR_4293 PF01432 Peptidase family M3 XCR_4294 PF01112 Asparaginase XCR_4296 PF00472 RF-1 domain XCR_4298 PF00849 RNA pseudouridylate synthase XCR_4299 PF03109 ABC1 family XCR_4301 PF07478 D-ala D-ala ligase C-terminus XCR_4301 PF01820 D-ala D-ala ligase N-terminus XCR_4304 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XCR_4305 PF00501 AMP-binding enzyme XCR_4307 PF03692 Putative zinc- or iron-chelating domain XCR_4308 PF00561 alpha/beta hydrolase fold XCR_4309 PF02661 Fic/DOC family XCR_4309 PF13784 Fic/DOC family N-terminal XCR_4310 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XCR_4310 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XCR_4313 PF00588 SpoU rRNA Methylase family XCR_4314 PF07690 Major Facilitator Superfamily XCR_4318 PF00158 Sigma-54 interaction domain XCR_4318 PF00072 Response regulator receiver domain XCR_4318 PF02954 Bacterial regulatory protein, Fis family XCR_4319 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_4319 PF00512 His Kinase A (phospho-acceptor) domain XCR_4320 PF00205 Thiamine pyrophosphate enzyme, central domain XCR_4320 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XCR_4320 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XCR_4323 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus XCR_4323 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XCR_4324 PF02556 Preprotein translocase subunit SecB XCR_4325 PF00581 Rhodanese-like domain XCR_4333 PF00108 Thiolase, N-terminal domain XCR_4333 PF02803 Thiolase, C-terminal domain XCR_4335 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XCR_4336 PF00080 Copper/zinc superoxide dismutase (SODC) XCR_4337 PF00080 Copper/zinc superoxide dismutase (SODC) XCR_4340 PF00072 Response regulator receiver domain XCR_4340 PF00158 Sigma-54 interaction domain XCR_4340 PF02954 Bacterial regulatory protein, Fis family XCR_4341 PF00512 His Kinase A (phospho-acceptor) domain XCR_4341 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_4341 PF00989 PAS fold XCR_4342 PF00909 Ammonium Transporter Family XCR_4343 PF00543 Nitrogen regulatory protein P-II XCR_4344 PF03951 Glutamine synthetase, beta-Grasp domain XCR_4344 PF00120 Glutamine synthetase, catalytic domain XCR_4345 PF02673 Bacitracin resistance protein BacA XCR_4348 PF01161 Phosphatidylethanolamine-binding protein XCR_4353 PF03061 Thioesterase superfamily XCR_4354 PF13091 PLD-like domain XCR_4355 PF04264 YceI-like domain XCR_4356 PF00300 Histidine phosphatase superfamily (branch 1) XCR_4357 PF01883 Iron-sulfur cluster assembly protein XCR_4357 PF10609 NUBPL iron-transfer P-loop NTPase XCR_4364 PF10017 Histidine-specific methyltransferase, SAM-dependent XCR_4365 PF12867 DinB superfamily XCR_4365 PF03781 Sulfatase-modifying factor enzyme 1 XCR_4368 PF00528 Binding-protein-dependent transport system inner membrane component XCR_4369 PF00005 ABC transporter XCR_4369 PF00571 CBS domain XCR_4373 PF00005 ABC transporter XCR_4375 PF01734 Patatin-like phospholipase XCR_4378 PF07660 Secretin and TonB N terminus short domain XCR_4378 PF07715 TonB-dependent Receptor Plug Domain XCR_4378 PF00593 TonB dependent receptor XCR_4380 PF01037 Lrp/AsnC ligand binding domain XCR_4381 PF00351 Biopterin-dependent aromatic amino acid hydroxylase XCR_4384 PF00657 GDSL-like Lipase/Acylhydrolase XCR_4388 PF04962 KduI/IolB family XCR_4389 PF00356 Bacterial regulatory proteins, lacI family XCR_4390 PF04616 Glycosyl hydrolases family 43 XCR_4390 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XCR_4391 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component XCR_4393 PF03480 Bacterial extracellular solute-binding protein, family 7 XCR_4396 PF13472 GDSL-like Lipase/Acylhydrolase family XCR_4396 PF07859 alpha/beta hydrolase fold XCR_4397 PF00135 Carboxylesterase family XCR_4398 PF13472 GDSL-like Lipase/Acylhydrolase family XCR_4399 PF00248 Aldo/keto reductase family XCR_4404 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCR_4404 PF00128 Alpha amylase, catalytic domain XCR_4404 PF02806 Alpha amylase, C-terminal all-beta domain XCR_4405 PF00128 Alpha amylase, catalytic domain XCR_4405 PF16657 Maltogenic Amylase, C-terminal domain XCR_4406 PF00128 Alpha amylase, catalytic domain XCR_4406 PF11896 Domain of unknown function (DUF3416) XCR_4414 PF01527 Transposase XCR_4415 PF13276 HTH-like domain XCR_4415 PF13683 Integrase core domain XCR_4418 PF04381 Putative exonuclease, RdgC XCR_4419 PF01171 PP-loop family XCR_4422 PF00356 Bacterial regulatory proteins, lacI family XCR_4423 PF07488 Glycosyl hydrolase family 67 middle domain XCR_4423 PF03648 Glycosyl hydrolase family 67 N-terminus XCR_4423 PF07477 Glycosyl hydrolase family 67 C-terminus XCR_4425 PF13378 Enolase C-terminal domain-like XCR_4425 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XCR_4426 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XCR_4426 PF04616 Glycosyl hydrolases family 43 XCR_4427 PF14310 Fibronectin type III-like domain XCR_4427 PF00933 Glycosyl hydrolase family 3 N terminal domain XCR_4427 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCR_4427 PF07691 PA14 domain XCR_4428 PF08125 Mannitol dehydrogenase C-terminal domain XCR_4428 PF01232 Mannitol dehydrogenase Rossmann domain XCR_4434 PF08450 SMP-30/Gluconolactonase/LRE-like region XCR_4437 PF00331 Glycosyl hydrolase family 10 XCR_4438 PF02837 Glycosyl hydrolases family 2, sugar binding domain XCR_4438 PF00703 Glycosyl hydrolases family 2 XCR_4438 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XCR_4438 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XCR_4438 PF16355 Domain of unknown function (DUF4982) XCR_4439 PF02614 Glucuronate isomerase XCR_4440 PF03422 Carbohydrate binding module (family 6) XCR_4440 PF00331 Glycosyl hydrolase family 10 XCR_4440 PF00553 Cellulose binding domain XCR_4445 PF04616 Glycosyl hydrolases family 43 XCR_4446 PF01609 Transposase DDE domain XCR_4446 PF05598 Transposase domain (DUF772) XCR_4450 PF01527 Transposase XCR_4451 PF13276 HTH-like domain XCR_4451 PF13683 Integrase core domain XCR_4453 PF05598 Transposase domain (DUF772) XCR_4453 PF01609 Transposase DDE domain XCR_4457 PF08240 Alcohol dehydrogenase GroES-like domain XCR_4457 PF16197 Ketoacyl-synthetase C-terminal extension XCR_4457 PF00109 Beta-ketoacyl synthase, N-terminal domain XCR_4457 PF02801 Beta-ketoacyl synthase, C-terminal domain XCR_4457 PF00698 Acyl transferase domain XCR_4457 PF08659 KR domain XCR_4457 PF00550 Phosphopantetheine attachment site XCR_4457 PF14765 Polyketide synthase dehydratase XCR_4457 PF00107 Zinc-binding dehydrogenase XCR_4458 PF01553 Acyltransferase XCR_4460 PF00356 Bacterial regulatory proteins, lacI family XCR_4464 PF04820 Tryptophan halogenase XCR_4466 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family XCR_4467 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) XCR_4469 PF04337 Protein of unknown function, DUF480 XCR_4472 PF13302 Acetyltransferase (GNAT) domain XCR_4474 PF13361 UvrD-like helicase C-terminal domain XCR_4474 PF00580 UvrD/REP helicase N-terminal domain XCR_4476 PF00265 Thymidine kinase XCR_4478 PF01590 GAF domain XCR_4478 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCR_4478 PF00512 His Kinase A (phospho-acceptor) domain XCR_4478 PF00360 Phytochrome region XCR_4478 PF08446 PAS fold XCR_4479 PF04349 Periplasmic glucan biosynthesis protein, MdoG XCR_4482 PF06827 Zinc finger found in FPG and IleRS XCR_4482 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XCR_4482 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XCR_4488 PF03594 Benzoate membrane transport protein XCR_4489 PF00360 Phytochrome region XCR_4489 PF13426 PAS domain XCR_4489 PF08446 PAS fold XCR_4489 PF01590 GAF domain XCR_4490 PF01126 Heme oxygenase XCR_4491 PF07690 Major Facilitator Superfamily XCR_4493 PF01263 Aldose 1-epimerase XCR_4495 PF02810 SEC-C motif XCR_4497 PF01925 Sulfite exporter TauE/SafE XCR_4498 PF00593 TonB dependent receptor XCR_4498 PF07715 TonB-dependent Receptor Plug Domain XCR_4504 PF01227 GTP cyclohydrolase I XCR_4506 PF07869 Protein of unknown function (DUF1656) XCR_4507 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCR_4507 PF00529 HlyD membrane-fusion protein of T1SS XCR_4508 PF02321 Outer membrane efflux protein XCR_4509 PF04632 Fusaric acid resistance protein family XCR_4510 PF00083 Sugar (and other) transporter XCR_4513 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_4513 PF03466 LysR substrate binding domain XCR_4514 PF00106 short chain dehydrogenase XCR_4515 PF13091 PLD-like domain XCR_4515 PF13396 Phospholipase_D-nuclease N-terminal XCR_4528 PF00849 RNA pseudouridylate synthase XCR_4530 PF17757 UvrB interaction domain XCR_4530 PF12344 Ultra-violet resistance protein B XCR_4530 PF04851 Type III restriction enzyme, res subunit XCR_4530 PF02151 UvrB/uvrC motif XCR_4530 PF00271 Helicase conserved C-terminal domain XCR_4532 PF01527 Transposase XCR_4533 PF13683 Integrase core domain XCR_4533 PF13276 HTH-like domain XCR_4538 PF01381 Helix-turn-helix XCR_4540 PF13538 UvrD-like helicase C-terminal domain XCR_4542 PF13361 UvrD-like helicase C-terminal domain XCR_4542 PF12705 PD-(D/E)XK nuclease superfamily XCR_4542 PF00580 UvrD/REP helicase N-terminal domain XCR_4543 PF17946 RecC C-terminal domain XCR_4551 PF00005 ABC transporter XCR_4552 PF02405 Permease MlaE XCR_4553 PF02470 MlaD protein XCR_4554 PF05494 MlaC protein XCR_4556 PF04333 MlaA lipoprotein XCR_4558 PF00255 Glutathione peroxidase XCR_4561 PF02646 RmuC family XCR_4564 PF08240 Alcohol dehydrogenase GroES-like domain XCR_4564 PF00107 Zinc-binding dehydrogenase XCR_4565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCR_4565 PF03466 LysR substrate binding domain XCR_4570 PF13520 Amino acid permease XCR_4572 PF00593 TonB dependent receptor XCR_4572 PF07715 TonB-dependent Receptor Plug Domain XCR_4573 PF10947 Protein of unknown function (DUF2628) XCR_4574 PF00990 Diguanylate cyclase, GGDEF domain XCR_4574 PF17155 Gammaproteobacterial periplasmic sensor domain XCR_4575 PF13556 PucR C-terminal helix-turn-helix domain XCR_4575 PF17853 GGDEF-like domain XCR_4575 PF05651 Putative sugar diacid recognition XCR_4576 PF02595 Glycerate kinase family XCR_4577 PF07690 Major Facilitator Superfamily XCR_4583 PF10672 S-adenosylmethionine-dependent methyltransferase XCR_4583 PF17785 PUA-like domain XCR_4585 PF03741 Integral membrane protein TerC family XCR_4586 PF01609 Transposase DDE domain XCR_4586 PF05598 Transposase domain (DUF772) XCR_4587 PF01694 Rhomboid family XCR_4589 PF03009 Glycerophosphoryl diester phosphodiesterase family XCR_4591 PF01569 PAP2 superfamily XCR_4593 PF00593 TonB dependent receptor XCR_4594 PF12631 MnmE helical domain XCR_4594 PF10396 GTP-binding protein TrmE N-terminus XCR_4594 PF01926 50S ribosome-binding GTPase XCR_4595 PF01522 Polysaccharide deacetylase XCR_4596 PF14849 YidC periplasmic domain XCR_4596 PF02096 60Kd inner membrane protein XCR_4597 PF00825 Ribonuclease P XCR_4599 PF00468 Ribosomal protein L34