XCR_0001 SM00382 ATPases associated with a variety of cellular activities XCR_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain XCR_0002 SM00480 DNA polymerase III beta subunit XCR_0004 SM00387 Histidine kinase-like ATPases XCR_0004 SM00433 TopoisomeraseII XCR_0007 SM00028 Tetratricopeptide repeats XCR_0015 SM00155 Phospholipase D. Active site motifs. XCR_0016 SM00729 Elongator protein 3, MiaB family, Radical SAM XCR_0026 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XCR_0026 SM00245 tail specific protease XCR_0037 SM00829 Enoylreductase XCR_0064 SM00487 DEAD-like helicases superfamily XCR_0064 SM00490 helicase superfamily c-terminal domain XCR_0080 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XCR_0080 SM00091 PAS domain XCR_0080 SM00421 helix_turn_helix, Lux Regulon XCR_0121 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen XCR_0128 SM00421 helix_turn_helix, Lux Regulon XCR_0128 SM00448 cheY-homologous receiver domain XCR_0134 SM00862 Transcriptional regulatory protein, C terminal XCR_0159 SM00382 ATPases associated with a variety of cellular activities XCR_0161 SM00836 DALR anticodon binding domain XCR_0167 SM00564 beta-propeller repeat XCR_0173 SM00091 PAS domain XCR_0173 SM00387 Histidine kinase-like ATPases XCR_0173 SM00388 His Kinase A (phosphoacceptor) domain XCR_0173 SM00448 cheY-homologous receiver domain XCR_0177 SM00342 helix_turn_helix, arabinose operon control protein XCR_0178 SM00346 helix_turn_helix isocitrate lyase regulation XCR_0182 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XCR_0193 SM00421 helix_turn_helix, Lux Regulon XCR_0193 SM00448 cheY-homologous receiver domain XCR_0206 SM00248 ankyrin repeats XCR_0207 SM00248 ankyrin repeats XCR_0208 SM00248 ankyrin repeats XCR_0209 SM00248 ankyrin repeats XCR_0232 SM00155 Phospholipase D. Active site motifs. XCR_0237 SM01266 XCR_0237 XCR_0241 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs XCR_0241 SM00474 3'-5' exonuclease XCR_0241 SM00475 5'-3' exonuclease XCR_0241 SM00482 DNA polymerase A domain XCR_0252 SM00563 Phosphate acyltransferases XCR_0260 SM00822 XCR_0260 XCR_0265 SM00825 Beta-ketoacyl synthase XCR_0268 SM00248 ankyrin repeats XCR_0273 SM01057 Eukaryotic-type carbonic anhydrase XCR_0274 SM00116 Domain in cystathionine beta-synthase and other proteins. XCR_0274 SM00924 MgtE intracellular N domain XCR_0277 SM00881 CoA binding domain XCR_0292 SM00382 ATPases associated with a variety of cellular activities XCR_0300 SM00530 Helix-turn-helix XRE-family like proteins XCR_0302 SM00382 ATPases associated with a variety of cellular activities XCR_0307 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. XCR_0316 SM01004 Delta-aminolevulinic acid dehydratase XCR_0322 SM00491 XCR_0322 XCR_0324 SM01060 XCR_0324 XCR_0325 SM00248 ankyrin repeats XCR_0331 SM00448 cheY-homologous receiver domain XCR_0331 SM00862 Transcriptional regulatory protein, C terminal XCR_0332 SM00387 Histidine kinase-like ATPases XCR_0332 SM00388 His Kinase A (phosphoacceptor) domain XCR_0343 SM00342 helix_turn_helix, arabinose operon control protein XCR_0349 SM00960 Roadblock/LC7 domain XCR_0355 SM00849 Metallo-beta-lactamase superfamily XCR_0363 SM00382 ATPases associated with a variety of cellular activities XCR_0368 SM00421 helix_turn_helix, Lux Regulon XCR_0368 SM00448 cheY-homologous receiver domain XCR_0371 SM01060 XCR_0371 XCR_0378 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XCR_0382 SM00387 Histidine kinase-like ATPases XCR_0382 SM00388 His Kinase A (phosphoacceptor) domain XCR_0383 SM00862 Transcriptional regulatory protein, C terminal XCR_0397 SM00244 prohibitin homologues XCR_0402 SM00986 Uracil DNA glycosylase superfamily XCR_0402 SM00987 UreE urease accessory protein, C-terminal domain XCR_0408 SM00052 Putative diguanylate phosphodiesterase XCR_0412 SM00382 ATPases associated with a variety of cellular activities XCR_0414 SM00938 Nitrogen regulatory protein P-II XCR_0420 SM00823 Phosphopantetheine attachment site XCR_0420 SM00824 Thioesterase XCR_0428 SM00836 DALR anticodon binding domain XCR_0428 SM01016 Arginyl tRNA synthetase N terminal dom XCR_0439 SM00470 ParB-like nuclease domain XCR_0449 SM00363 S4 RNA-binding domain XCR_0471 SM00400 zinc finger XCR_0471 SM00493 XCR_0471 XCR_0471 SM00766 DNA primase DnaG DnaB-binding XCR_0478 SM00905 Dihydroneopterin aldolase XCR_0480 SM01217 XCR_0480 XCR_0488 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XCR_0490 SM00644 XCR_0490 XCR_0503 SM01150 XCR_0503 XCR_0514 SM00257 Lysin motif XCR_0522 SM00357 Cold shock protein domain XCR_0522 SM00382 ATPases associated with a variety of cellular activities XCR_0522 SM00959 Rho termination factor, N-terminal domain XCR_0525 SM00487 DEAD-like helicases superfamily XCR_0525 SM00490 helicase superfamily c-terminal domain XCR_0526 SM00382 ATPases associated with a variety of cellular activities XCR_0528 SM00448 cheY-homologous receiver domain XCR_0529 SM00986 Uracil DNA glycosylase superfamily XCR_0529 SM00987 UreE urease accessory protein, C-terminal domain XCR_0536 SM00487 DEAD-like helicases superfamily XCR_0536 SM00490 helicase superfamily c-terminal domain XCR_0546 SM00091 PAS domain XCR_0546 SM00267 diguanylate cyclase XCR_0550 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain XCR_0550 SM00437 Bacterial DNA topoisomerase I DNA-binding domain XCR_0550 SM00493 XCR_0550 XCR_0555 SM00257 Lysin motif XCR_0573 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XCR_0574 SM00267 diguanylate cyclase XCR_0584 SM00822 XCR_0584 XCR_0587 SM00631 XCR_0587 XCR_0588 SM00382 ATPases associated with a variety of cellular activities XCR_0597 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XCR_0607 SM00382 ATPases associated with a variety of cellular activities XCR_0620 SM00382 ATPases associated with a variety of cellular activities XCR_0620 SM00448 cheY-homologous receiver domain XCR_0621 SM00448 cheY-homologous receiver domain XCR_0623 SM00091 PAS domain XCR_0623 SM00138 Methyltransferase, chemotaxis proteins XCR_0623 SM00911 HWE histidine kinase XCR_0634 SM00387 Histidine kinase-like ATPases XCR_0635 SM00448 cheY-homologous receiver domain XCR_0635 SM00850 LytTr DNA-binding domain XCR_0649 SM00729 Elongator protein 3, MiaB family, Radical SAM XCR_0650 SM00986 Uracil DNA glycosylase superfamily XCR_0650 SM00987 UreE urease accessory protein, C-terminal domain XCR_0651 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. XCR_0654 SM00382 ATPases associated with a variety of cellular activities XCR_0665 SM00344 helix_turn_helix ASNC type XCR_0667 SM01005 Alanine racemase, C-terminal domain XCR_0671 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XCR_0671 SM00091 PAS domain XCR_0671 SM00387 Histidine kinase-like ATPases XCR_0671 SM00388 His Kinase A (phosphoacceptor) domain XCR_0671 SM00448 cheY-homologous receiver domain XCR_0685 SM00382 ATPases associated with a variety of cellular activities XCR_0685 SM00930 XCR_0685 XCR_0692 SM00986 Uracil DNA glycosylase superfamily XCR_0692 SM00987 UreE urease accessory protein, C-terminal domain XCR_0706 SM00382 ATPases associated with a variety of cellular activities XCR_0708 SM00830 Chorismate mutase type II XCR_0712 SM00387 Histidine kinase-like ATPases XCR_0713 SM00382 ATPases associated with a variety of cellular activities XCR_0713 SM00448 cheY-homologous receiver domain XCR_0717 SM00382 ATPases associated with a variety of cellular activities XCR_0732 SM00825 Beta-ketoacyl synthase XCR_0738 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XCR_0742 SM00487 DEAD-like helicases superfamily XCR_0742 SM00490 helicase superfamily c-terminal domain XCR_0750 SM00116 Domain in cystathionine beta-synthase and other proteins. XCR_0754 SM00382 ATPases associated with a variety of cellular activities XCR_0767 SM00893 Electron transfer flavoprotein domain XCR_0768 SM00893 Electron transfer flavoprotein domain XCR_0776 SM00882 Coenzyme A transferase XCR_0777 SM00882 Coenzyme A transferase XCR_0783 SM00382 ATPases associated with a variety of cellular activities XCR_0786 SM00528 Domain in histone-like proteins of HNS family XCR_0794 SM00656 XCR_0794 XCR_0795 SM00656 XCR_0795 XCR_0796 SM00656 XCR_0796 XCR_0809 SM01211 XCR_0809 XCR_0815 SM00382 ATPases associated with a variety of cellular activities XCR_0828 SM00345 helix_turn_helix gluconate operon transcriptional repressor XCR_0828 SM00866 XCR_0828 XCR_0845 SM00028 Tetratricopeptide repeats XCR_0852 SM00382 ATPases associated with a variety of cellular activities XCR_0865 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain XCR_0872 SM00387 Histidine kinase-like ATPases XCR_0872 SM00388 His Kinase A (phosphoacceptor) domain XCR_0873 SM00448 cheY-homologous receiver domain XCR_0873 SM00862 Transcriptional regulatory protein, C terminal XCR_0896 SM00842 Cell division protein FtsA XCR_0898 SM00864 Tubulin/FtsZ family, GTPase domain XCR_0898 SM00865 Tubulin/FtsZ family, C-terminal domain XCR_0903 SM00957 SecA DEAD-like domain XCR_0903 SM00958 SecA preprotein cross-linking domain XCR_0904 SM00869 Autotransporter beta-domain XCR_0913 SM00829 Enoylreductase XCR_0920 SM00642 Alpha-amylase domain XCR_0927 SM00996 S-adenosyl-L-homocysteine hydrolase XCR_0927 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XCR_0953 SM00382 ATPases associated with a variety of cellular activities XCR_0957 SM00382 ATPases associated with a variety of cellular activities XCR_0959 SM00448 cheY-homologous receiver domain XCR_0959 SM00862 Transcriptional regulatory protein, C terminal XCR_0960 SM00387 Histidine kinase-like ATPases XCR_0960 SM00388 His Kinase A (phosphoacceptor) domain XCR_0971 SM00650 Ribosomal RNA adenine dimethylases XCR_0983 SM00345 helix_turn_helix gluconate operon transcriptional repressor XCR_0983 SM00895 XCR_0983 XCR_0991 SM00347 helix_turn_helix multiple antibiotic resistance protein XCR_1003 SM00342 helix_turn_helix, arabinose operon control protein XCR_1007 SM00448 cheY-homologous receiver domain XCR_1008 SM00387 Histidine kinase-like ATPases XCR_1008 SM00388 His Kinase A (phosphoacceptor) domain XCR_1008 SM00448 cheY-homologous receiver domain XCR_1009 SM00421 helix_turn_helix, Lux Regulon XCR_1026 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs XCR_1026 SM00475 5'-3' exonuclease XCR_1055 SM00852 Probable molybdopterin binding domain XCR_1056 SM00028 Tetratricopeptide repeats XCR_1057 SM00937 XCR_1057 XCR_1060 SM00028 Tetratricopeptide repeats XCR_1064 SM01400 XCR_1064 XCR_1074 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. XCR_1074 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. XCR_1076 SM00649 Ribosomal protein L11/L12 XCR_1081 SM00663 RNA polymerase I subunit A N-terminus XCR_1085 SM00838 Elongation factor G C-terminus XCR_1085 SM00889 Elongation factor G, domain IV XCR_1087 SM01403 XCR_1087 XCR_1091 SM01382 XCR_1091 XCR_1091 SM01383 XCR_1091 XCR_1094 SM00322 K homology RNA-binding domain XCR_1098 SM01374 XCR_1098 XCR_1099 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. XCR_1111 SM00363 S4 RNA-binding domain XCR_1111 SM01390 XCR_1111 XCR_1112 SM00662 RNA polymerases D XCR_1119 SM00838 Elongation factor G C-terminus XCR_1128 SM00829 Enoylreductase XCR_1131 SM00363 S4 RNA-binding domain XCR_1137 SM00382 ATPases associated with a variety of cellular activities XCR_1139 SM00829 Enoylreductase XCR_1143 SM00855 Phosphoglycerate mutase family XCR_1154 SM00014 Acid phosphatase homologues XCR_1158 SM00091 PAS domain XCR_1158 SM00387 Histidine kinase-like ATPases XCR_1158 SM00388 His Kinase A (phosphoacceptor) domain XCR_1160 SM00448 cheY-homologous receiver domain XCR_1160 SM00862 Transcriptional regulatory protein, C terminal XCR_1165 SM01329 XCR_1165 XCR_1176 SM00382 ATPases associated with a variety of cellular activities XCR_1176 SM00994 ClpX C4-type zinc finger XCR_1176 SM01086 C-terminal, D2-small domain, of ClpB protein XCR_1177 SM00382 ATPases associated with a variety of cellular activities XCR_1177 SM00464 Found in ATP-dependent protease La (LON) XCR_1178 SM00411 bacterial (prokaryotic) histone like domain XCR_1184 SM00257 Lysin motif XCR_1185 SM00849 Metallo-beta-lactamase superfamily XCR_1188 SM00479 XCR_1188 XCR_1189 SM00331 Sigma factor PP2C-like phosphatases XCR_1189 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain XCR_1194 SM00849 Metallo-beta-lactamase superfamily XCR_1195 SM00729 Elongator protein 3, MiaB family, Radical SAM XCR_1201 SM00382 ATPases associated with a variety of cellular activities XCR_1203 SM00493 XCR_1203 XCR_1206 SM00460 Transglutaminase/protease-like homologues XCR_1208 SM00382 ATPases associated with a variety of cellular activities XCR_1217 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XCR_1218 SM00822 XCR_1218 XCR_1220 SM00825 Beta-ketoacyl synthase XCR_1229 SM00382 ATPases associated with a variety of cellular activities XCR_1251 SM00271 DnaJ molecular chaperone homology domain XCR_1252 SM00448 cheY-homologous receiver domain XCR_1254 SM00244 prohibitin homologues XCR_1255 SM00244 prohibitin homologues XCR_1257 SM00788 Adenylosuccinate synthetase XCR_1263 SM00822 XCR_1263 XCR_1277 SM00487 DEAD-like helicases superfamily XCR_1281 SM00855 Phosphoglycerate mutase family XCR_1295 SM00052 Putative diguanylate phosphodiesterase XCR_1296 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XCR_1298 SM01217 XCR_1298 XCR_1299 SM00829 Enoylreductase XCR_1306 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XCR_1307 SM01092 CO dehydrogenase flavoprotein C-terminal domain XCR_1311 SM00974 XCR_1311 XCR_1318 SM00481 DNA polymerase alpha chain like domain XCR_1327 SM00091 PAS domain XCR_1327 SM00342 helix_turn_helix, arabinose operon control protein XCR_1329 SM01060 XCR_1329 XCR_1342 SM00448 cheY-homologous receiver domain XCR_1342 SM00862 Transcriptional regulatory protein, C terminal XCR_1343 SM00387 Histidine kinase-like ATPases XCR_1343 SM00388 His Kinase A (phosphoacceptor) domain XCR_1350 SM00421 helix_turn_helix, Lux Regulon XCR_1350 SM00448 cheY-homologous receiver domain XCR_1356 SM00478 endonuclease III XCR_1361 SM00244 prohibitin homologues XCR_1383 SM00904 Riboflavin kinase XCR_1394 SM00382 ATPases associated with a variety of cellular activities XCR_1396 SM00862 Transcriptional regulatory protein, C terminal XCR_1398 SM00342 helix_turn_helix, arabinose operon control protein XCR_1407 SM00387 Histidine kinase-like ATPases XCR_1407 SM00388 His Kinase A (phosphoacceptor) domain XCR_1408 SM00387 Histidine kinase-like ATPases XCR_1408 SM00388 His Kinase A (phosphoacceptor) domain XCR_1408 SM00448 cheY-homologous receiver domain XCR_1415 SM00387 Histidine kinase-like ATPases XCR_1415 SM00388 His Kinase A (phosphoacceptor) domain XCR_1415 SM00448 cheY-homologous receiver domain XCR_1417 SM00138 Methyltransferase, chemotaxis proteins XCR_1418 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XCR_1418 SM00387 Histidine kinase-like ATPases XCR_1418 SM00388 His Kinase A (phosphoacceptor) domain XCR_1418 SM00448 cheY-homologous receiver domain XCR_1420 SM00091 PAS domain XCR_1420 SM00387 Histidine kinase-like ATPases XCR_1420 SM00388 His Kinase A (phosphoacceptor) domain XCR_1421 SM00448 cheY-homologous receiver domain XCR_1427 SM00813 Alpha-L-arabinofuranosidase C-terminus XCR_1430 SM00382 ATPases associated with a variety of cellular activities XCR_1430 SM00962 SRP54-type protein, GTPase domain XCR_1430 SM00963 SRP54-type protein, helical bundle domain XCR_1446 SM00533 DNA-binding domain of DNA mismatch repair MUTS family XCR_1446 SM00534 ATPase domain of DNA mismatch repair MUTS family XCR_1488 SM00382 ATPases associated with a variety of cellular activities XCR_1506 SM00812 Alpha-L-fucosidase XCR_1512 SM00530 Helix-turn-helix XRE-family like proteins XCR_1523 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XCR_1524 SM00838 Elongation factor G C-terminus XCR_1527 SM00358 Double-stranded RNA binding motif XCR_1527 SM00535 Ribonuclease III family XCR_1530 SM00448 cheY-homologous receiver domain XCR_1534 SM01118 XCR_1534 XCR_1541 SM00357 Cold shock protein domain XCR_1544 SM00487 DEAD-like helicases superfamily XCR_1544 SM00490 helicase superfamily c-terminal domain XCR_1551 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XCR_1551 SM00267 diguanylate cyclase XCR_1556 SM00869 Autotransporter beta-domain XCR_1557 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XCR_1625 SM00481 DNA polymerase alpha chain like domain XCR_1633 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XCR_1639 SM00267 diguanylate cyclase XCR_1645 SM00972 Spore Coat Protein U domain XCR_1648 SM00972 Spore Coat Protein U domain XCR_1650 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XCR_1656 SM00671 Sel1-like repeats. XCR_1658 SM01172 XCR_1658 XCR_1659 SM00710 Parallel beta-helix repeats XCR_1659 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses XCR_1665 SM00434 DNA Topoisomerase IV XCR_1666 SM00342 helix_turn_helix, arabinose operon control protein XCR_1667 SM00347 helix_turn_helix multiple antibiotic resistance protein XCR_1675 SM01217 XCR_1675 XCR_1676 SM00631 XCR_1676 XCR_1682 SM00347 helix_turn_helix multiple antibiotic resistance protein XCR_1687 SM00382 ATPases associated with a variety of cellular activities XCR_1691 SM00947 Carbonic anhydrase XCR_1694 SM00357 Cold shock protein domain XCR_1714 SM00822 XCR_1714 XCR_1716 SM00267 diguanylate cyclase XCR_1718 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XCR_1718 SM00267 diguanylate cyclase XCR_1738 SM00271 DnaJ molecular chaperone homology domain XCR_1746 SM00382 ATPases associated with a variety of cellular activities XCR_1752 SM00861 Transketolase, pyrimidine binding domain XCR_1754 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. XCR_1766 SM00382 ATPases associated with a variety of cellular activities XCR_1767 SM00345 helix_turn_helix gluconate operon transcriptional repressor XCR_1771 SM00984 UDP binding domain XCR_1775 SM00354 helix_turn _helix lactose operon repressor XCR_1779 SM01018 B12 binding domain XCR_1781 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor XCR_1788 SM00316 Ribosomal protein S1-like RNA-binding domain XCR_1788 SM00357 Cold shock protein domain XCR_1788 SM00955 XCR_1788 XCR_1791 SM00967 RNA 2'-O ribose methyltransferase substrate binding XCR_1793 SM00267 diguanylate cyclase XCR_1794 SM00479 XCR_1794 XCR_1797 SM00382 ATPases associated with a variety of cellular activities XCR_1804 SM00947 Carbonic anhydrase XCR_1806 SM00478 endonuclease III XCR_1806 SM00525 XCR_1806 XCR_1811 SM00450 Rhodanese Homology Domain XCR_1813 SM00644 XCR_1813 XCR_1821 SM00382 ATPases associated with a variety of cellular activities XCR_1822 SM00981 XCR_1822 XCR_1829 SM00479 XCR_1829 XCR_1835 SM00947 Carbonic anhydrase XCR_1846 SM00968 SMC proteins Flexible Hinge Domain XCR_1847 SM00771 ZipA, C-terminal domain (FtsZ-binding) XCR_1849 SM00292 breast cancer carboxy-terminal domain XCR_1849 SM00532 Ligase N family XCR_1853 SM00434 DNA Topoisomerase IV XCR_1854 SM00564 beta-propeller repeat XCR_1861 SM00345 helix_turn_helix gluconate operon transcriptional repressor XCR_1861 SM00866 XCR_1861 XCR_1865 SM00240 Forkhead associated domain XCR_1869 SM00830 Chorismate mutase type II XCR_1877 SM00347 helix_turn_helix multiple antibiotic resistance protein XCR_1885 SM00477 DNA/RNA non-specific endonuclease XCR_1885 SM00892 DNA/RNA non-specific endonuclease XCR_1888 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XCR_1888 SM00091 PAS domain XCR_1888 SM00387 Histidine kinase-like ATPases XCR_1888 SM00388 His Kinase A (phosphoacceptor) domain XCR_1888 SM00448 cheY-homologous receiver domain XCR_1889 SM00448 cheY-homologous receiver domain XCR_1890 SM00382 ATPases associated with a variety of cellular activities XCR_1891 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XCR_1891 SM00091 PAS domain XCR_1891 SM00387 Histidine kinase-like ATPases XCR_1891 SM00388 His Kinase A (phosphoacceptor) domain XCR_1891 SM00448 cheY-homologous receiver domain XCR_1892 SM00028 Tetratricopeptide repeats XCR_1918 SM00729 Elongator protein 3, MiaB family, Radical SAM XCR_1920 SM00382 ATPases associated with a variety of cellular activities XCR_1925 SM01091 Transporter associated domain XCR_1931 SM00387 Histidine kinase-like ATPases XCR_1931 SM00433 TopoisomeraseII XCR_1936 SM01192 XCR_1936 XCR_1936 SM01193 XCR_1936 XCR_1941 SM00463 Small MutS-related domain XCR_1945 SM00257 Lysin motif XCR_1947 SM01103 XCR_1947 XCR_1949 SM00382 ATPases associated with a variety of cellular activities XCR_1959 SM00382 ATPases associated with a variety of cellular activities XCR_1962 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain XCR_1967 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XCR_1967 SM00091 PAS domain XCR_1967 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_1977 SM00670 Large family of predicted nucleotide-binding domains XCR_1981 SM01130 XCR_1981 XCR_1986 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XCR_1995 SM00758 XCR_1995 XCR_2002 SM00646 XCR_2002 XCR_2020 SM00052 Putative diguanylate phosphodiesterase XCR_2020 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XCR_2020 SM00267 diguanylate cyclase XCR_2022 SM00448 cheY-homologous receiver domain XCR_2023 SM00387 Histidine kinase-like ATPases XCR_2025 SM00014 Acid phosphatase homologues XCR_2038 SM00912 haemagglutination activity domain XCR_2056 SM00100 Cyclic nucleotide-monophosphate binding domain XCR_2056 SM00419 helix_turn_helix, cAMP Regulatory protein XCR_2071 SM01007 Class II Aldolase and Adducin N-terminal domain XCR_2083 SM00841 Elongation factor P, C-terminal XCR_2083 SM01185 XCR_2083 XCR_2087 SM00899 XCR_2087 XCR_2094 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain XCR_2096 SM00851 MGS-like domain XCR_2096 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XCR_2104 SM00850 LytTr DNA-binding domain XCR_2105 SM00937 XCR_2105 XCR_2107 SM00448 cheY-homologous receiver domain XCR_2107 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XCR_2109 SM00073 Histidine Phosphotransfer domain XCR_2109 SM00387 Histidine kinase-like ATPases XCR_2109 SM00388 His Kinase A (phosphoacceptor) domain XCR_2109 SM00448 cheY-homologous receiver domain XCR_2114 SM00966 SpoVT / AbrB like domain XCR_2118 SM00052 Putative diguanylate phosphodiesterase XCR_2118 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XCR_2118 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XCR_2118 SM00091 PAS domain XCR_2118 SM00267 diguanylate cyclase XCR_2119 SM00448 cheY-homologous receiver domain XCR_2121 SM00138 Methyltransferase, chemotaxis proteins XCR_2122 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_2122 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_2125 SM00260 Two component signalling adaptor domain XCR_2128 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_2128 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_2129 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_2129 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_2131 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_2131 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_2132 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_2132 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_2133 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_2133 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_2134 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_2134 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_2135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_2135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_2135 SM01049 XCR_2135 XCR_2138 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_2138 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_2140 SM00073 Histidine Phosphotransfer domain XCR_2140 SM00260 Two component signalling adaptor domain XCR_2140 SM00387 Histidine kinase-like ATPases XCR_2140 SM01231 XCR_2140 XCR_2141 SM00448 cheY-homologous receiver domain XCR_2143 SM00260 Two component signalling adaptor domain XCR_2168 SM00073 Histidine Phosphotransfer domain XCR_2168 SM00260 Two component signalling adaptor domain XCR_2168 SM00387 Histidine kinase-like ATPases XCR_2168 SM01231 XCR_2168 XCR_2170 SM00448 cheY-homologous receiver domain XCR_2173 SM00382 ATPases associated with a variety of cellular activities XCR_2173 SM00962 SRP54-type protein, GTPase domain XCR_2178 SM00052 Putative diguanylate phosphodiesterase XCR_2178 SM00267 diguanylate cyclase XCR_2179 SM00267 diguanylate cyclase XCR_2180 SM00267 diguanylate cyclase XCR_2191 SM00382 ATPases associated with a variety of cellular activities XCR_2206 SM00822 XCR_2206 XCR_2207 SM00822 XCR_2207 XCR_2211 SM00382 ATPases associated with a variety of cellular activities XCR_2212 SM00448 cheY-homologous receiver domain XCR_2214 SM00421 helix_turn_helix, Lux Regulon XCR_2214 SM00448 cheY-homologous receiver domain XCR_2223 SM00047 Lysozyme subfamily 2 XCR_2232 SM00260 Two component signalling adaptor domain XCR_2232 SM00448 cheY-homologous receiver domain XCR_2233 SM00858 XCR_2233 XCR_2236 SM00387 Histidine kinase-like ATPases XCR_2237 SM00052 Putative diguanylate phosphodiesterase XCR_2237 SM00267 diguanylate cyclase XCR_2237 SM00448 cheY-homologous receiver domain XCR_2238 SM00091 PAS domain XCR_2238 SM00387 Histidine kinase-like ATPases XCR_2239 SM00052 Putative diguanylate phosphodiesterase XCR_2239 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XCR_2239 SM00091 PAS domain XCR_2239 SM00267 diguanylate cyclase XCR_2241 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_2246 SM00382 ATPases associated with a variety of cellular activities XCR_2246 SM01086 C-terminal, D2-small domain, of ClpB protein XCR_2247 SM00316 Ribosomal protein S1-like RNA-binding domain XCR_2252 SM00382 ATPases associated with a variety of cellular activities XCR_2252 SM00843 XCR_2252 XCR_2255 SM00382 ATPases associated with a variety of cellular activities XCR_2260 SM00562 XCR_2260 XCR_2262 SM00028 Tetratricopeptide repeats XCR_2265 SM00564 beta-propeller repeat XCR_2266 SM00382 ATPases associated with a variety of cellular activities XCR_2267 SM00852 Probable molybdopterin binding domain XCR_2268 SM00450 Rhodanese Homology Domain XCR_2280 SM00852 Probable molybdopterin binding domain XCR_2284 SM00448 cheY-homologous receiver domain XCR_2284 SM01012 XCR_2284 XCR_2290 SM00926 Molybdopterin oxidoreductase Fe4S4 domain XCR_2293 SM00858 XCR_2293 XCR_2304 SM00052 Putative diguanylate phosphodiesterase XCR_2306 SM00869 Autotransporter beta-domain XCR_2307 SM00869 Autotransporter beta-domain XCR_2315 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XCR_2315 SM00387 Histidine kinase-like ATPases XCR_2315 SM00388 His Kinase A (phosphoacceptor) domain XCR_2320 SM00318 Staphylococcal nuclease homologues XCR_2336 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_2336 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_2343 SM00448 cheY-homologous receiver domain XCR_2344 SM00091 PAS domain XCR_2344 SM00387 Histidine kinase-like ATPases XCR_2345 SM01068 Putative carbohydrate binding domain XCR_2363 SM00363 S4 RNA-binding domain XCR_2364 SM00316 Ribosomal protein S1-like RNA-binding domain XCR_2366 SM00421 helix_turn_helix, Lux Regulon XCR_2366 SM00448 cheY-homologous receiver domain XCR_2367 SM00450 Rhodanese Homology Domain XCR_2370 SM00984 UDP binding domain XCR_2373 SM00729 Elongator protein 3, MiaB family, Radical SAM XCR_2379 SM00278 Helix-hairpin-helix DNA-binding motif class 1 XCR_2379 SM00465 GIY-YIG type nucleases (URI domain) XCR_2381 SM00226 Low molecular weight phosphatase family XCR_2384 SM00382 ATPases associated with a variety of cellular activities XCR_2387 SM00849 Metallo-beta-lactamase superfamily XCR_2391 SM00382 ATPases associated with a variety of cellular activities XCR_2401 SM00382 ATPases associated with a variety of cellular activities XCR_2420 SM00448 cheY-homologous receiver domain XCR_2421 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XCR_2421 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XCR_2421 SM00091 PAS domain XCR_2421 SM00387 Histidine kinase-like ATPases XCR_2421 SM00388 His Kinase A (phosphoacceptor) domain XCR_2421 SM00448 cheY-homologous receiver domain XCR_2422 SM00316 Ribosomal protein S1-like RNA-binding domain XCR_2422 SM00732 Likely ribonuclease with RNase H fold. XCR_2437 SM00479 XCR_2437 XCR_2439 SM00529 Helix-turn-helix diphteria tox regulatory element XCR_2446 SM00342 helix_turn_helix, arabinose operon control protein XCR_2447 SM00387 Histidine kinase-like ATPases XCR_2448 SM00421 helix_turn_helix, Lux Regulon XCR_2448 SM00448 cheY-homologous receiver domain XCR_2449 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_2452 SM00116 Domain in cystathionine beta-synthase and other proteins. XCR_2452 SM01240 XCR_2452 XCR_2457 SM00822 XCR_2457 XCR_2461 SM00411 bacterial (prokaryotic) histone like domain XCR_2462 SM00316 Ribosomal protein S1-like RNA-binding domain XCR_2477 SM00354 helix_turn _helix lactose operon repressor XCR_2482 SM00363 S4 RNA-binding domain XCR_2488 SM00382 ATPases associated with a variety of cellular activities XCR_2496 SM00028 Tetratricopeptide repeats XCR_2499 SM00382 ATPases associated with a variety of cellular activities XCR_2500 SM00382 ATPases associated with a variety of cellular activities XCR_2505 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain XCR_2508 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase XCR_2512 SM00859 Semialdehyde dehydrogenase, NAD binding domain XCR_2520 SM00840 XCR_2520 XCR_2533 SM00849 Metallo-beta-lactamase superfamily XCR_2543 SM00841 Elongation factor P, C-terminal XCR_2543 SM01185 XCR_2543 XCR_2545 SM00052 Putative diguanylate phosphodiesterase XCR_2545 SM00267 diguanylate cyclase XCR_2545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_2552 SM00382 ATPases associated with a variety of cellular activities XCR_2553 SM00487 DEAD-like helicases superfamily XCR_2553 SM00490 helicase superfamily c-terminal domain XCR_2559 SM00357 Cold shock protein domain XCR_2561 SM01322 XCR_2561 XCR_2563 SM00052 Putative diguanylate phosphodiesterase XCR_2563 SM00267 diguanylate cyclase XCR_2566 SM00822 XCR_2566 XCR_2570 SM00853 MutL C terminal dimerisation domain XCR_2570 SM01340 XCR_2570 XCR_2571 SM00646 XCR_2571 XCR_2578 SM00474 3'-5' exonuclease XCR_2581 SM00528 Domain in histone-like proteins of HNS family XCR_2587 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XCR_2587 SM00267 diguanylate cyclase XCR_2588 SM00260 Two component signalling adaptor domain XCR_2589 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_2589 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_2590 SM00487 DEAD-like helicases superfamily XCR_2590 SM00490 helicase superfamily c-terminal domain XCR_2602 SM00729 Elongator protein 3, MiaB family, Radical SAM XCR_2607 SM00116 Domain in cystathionine beta-synthase and other proteins. XCR_2607 SM01091 Transporter associated domain XCR_2615 SM00382 ATPases associated with a variety of cellular activities XCR_2624 SM01230 XCR_2624 XCR_2626 SM01230 XCR_2626 XCR_2628 SM00267 diguanylate cyclase XCR_2628 SM00448 cheY-homologous receiver domain XCR_2640 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XCR_2640 SM00091 PAS domain XCR_2640 SM00387 Histidine kinase-like ATPases XCR_2640 SM00388 His Kinase A (phosphoacceptor) domain XCR_2640 SM00448 cheY-homologous receiver domain XCR_2640 SM01079 XCR_2640 XCR_2641 SM00448 cheY-homologous receiver domain XCR_2641 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XCR_2644 SM00342 helix_turn_helix, arabinose operon control protein XCR_2649 SM00354 helix_turn _helix lactose operon repressor XCR_2664 SM01323 XCR_2664 XCR_2668 SM00344 helix_turn_helix ASNC type XCR_2685 SM00387 Histidine kinase-like ATPases XCR_2712 SM01130 XCR_2712 XCR_2718 SM00342 helix_turn_helix, arabinose operon control protein XCR_2719 SM00382 ATPases associated with a variety of cellular activities XCR_2719 SM00962 SRP54-type protein, GTPase domain XCR_2719 SM00963 SRP54-type protein, helical bundle domain XCR_2721 SM00478 endonuclease III XCR_2724 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XCR_2724 SM00091 PAS domain XCR_2724 SM00387 Histidine kinase-like ATPases XCR_2724 SM00388 His Kinase A (phosphoacceptor) domain XCR_2724 SM00448 cheY-homologous receiver domain XCR_2730 SM00091 PAS domain XCR_2730 SM00387 Histidine kinase-like ATPases XCR_2730 SM00388 His Kinase A (phosphoacceptor) domain XCR_2730 SM00448 cheY-homologous receiver domain XCR_2731 SM00465 GIY-YIG type nucleases (URI domain) XCR_2746 SM00507 HNH nucleases XCR_2747 SM00861 Transketolase, pyrimidine binding domain XCR_2752 SM00849 Metallo-beta-lactamase superfamily XCR_2770 SM00422 helix_turn_helix, mercury resistance XCR_2771 SM00411 bacterial (prokaryotic) histone like domain XCR_2772 SM00873 B3/4 domain XCR_2772 SM00874 tRNA synthetase B5 domain XCR_2772 SM00896 Ferredoxin-fold anticodon binding domain XCR_2777 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain XCR_2778 SM00354 helix_turn _helix lactose operon repressor XCR_2779 SM00642 Alpha-amylase domain XCR_2790 SM00642 Alpha-amylase domain XCR_2820 SM00487 DEAD-like helicases superfamily XCR_2820 SM00490 helicase superfamily c-terminal domain XCR_2832 SM01001 AIR carboxylase XCR_2836 SM00316 Ribosomal protein S1-like RNA-binding domain XCR_2836 SM00322 K homology RNA-binding domain XCR_2837 SM01387 XCR_2837 XCR_2841 SM00316 Ribosomal protein S1-like RNA-binding domain XCR_2841 SM00322 K homology RNA-binding domain XCR_2851 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XCR_2852 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region XCR_2867 SM00052 Putative diguanylate phosphodiesterase XCR_2867 SM00267 diguanylate cyclase XCR_2867 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_2883 SM00859 Semialdehyde dehydrogenase, NAD binding domain XCR_2892 SM00257 Lysin motif XCR_2902 SM00729 Elongator protein 3, MiaB family, Radical SAM XCR_2914 SM00369 Leucine-rich repeats, typical (most populated) subfamily XCR_2927 SM01160 XCR_2927 XCR_2939 SM00098 Alkaline phosphatase homologues XCR_2940 SM00977 TilS substrate C-terminal domain XCR_2945 SM01351 XCR_2945 XCR_2952 SM00316 Ribosomal protein S1-like RNA-binding domain XCR_2975 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor XCR_2983 SM00382 ATPases associated with a variety of cellular activities XCR_2991 SM00363 S4 RNA-binding domain XCR_2992 SM00052 Putative diguanylate phosphodiesterase XCR_2992 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XCR_2992 SM00091 PAS domain XCR_2992 SM00267 diguanylate cyclase XCR_2993 SM00487 DEAD-like helicases superfamily XCR_2993 SM00490 helicase superfamily c-terminal domain XCR_3004 SM00342 helix_turn_helix, arabinose operon control protein XCR_3004 SM00478 endonuclease III XCR_3004 SM01009 AlkA N-terminal domain XCR_3014 SM00347 helix_turn_helix multiple antibiotic resistance protein XCR_3019 SM00926 Molybdopterin oxidoreductase Fe4S4 domain XCR_3019 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XCR_3032 SM00342 helix_turn_helix, arabinose operon control protein XCR_3050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_3050 SM00387 Histidine kinase-like ATPases XCR_3050 SM00388 His Kinase A (phosphoacceptor) domain XCR_3052 SM00448 cheY-homologous receiver domain XCR_3052 SM00862 Transcriptional regulatory protein, C terminal XCR_3058 SM00487 DEAD-like helicases superfamily XCR_3058 SM00490 helicase superfamily c-terminal domain XCR_3058 SM00982 XCR_3058 XCR_3058 SM01058 CarD-like/TRCF domain XCR_3061 SM00073 Histidine Phosphotransfer domain XCR_3061 SM00260 Two component signalling adaptor domain XCR_3061 SM00387 Histidine kinase-like ATPases XCR_3061 SM01231 XCR_3061 XCR_3062 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_3062 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_3063 SM00260 Two component signalling adaptor domain XCR_3064 SM00052 Putative diguanylate phosphodiesterase XCR_3064 SM00448 cheY-homologous receiver domain XCR_3065 SM00138 Methyltransferase, chemotaxis proteins XCR_3066 SM00448 cheY-homologous receiver domain XCR_3068 SM00155 Phospholipase D. Active site motifs. XCR_3071 SM00855 Phosphoglycerate mutase family XCR_3082 SM00248 ankyrin repeats XCR_3091 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XCR_3092 SM01092 CO dehydrogenase flavoprotein C-terminal domain XCR_3094 SM00829 Enoylreductase XCR_3096 SM00267 diguanylate cyclase XCR_3112 SM00732 Likely ribonuclease with RNase H fold. XCR_3120 SM00382 ATPases associated with a variety of cellular activities XCR_3123 SM00411 bacterial (prokaryotic) histone like domain XCR_3129 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain XCR_3132 SM00382 ATPases associated with a variety of cellular activities XCR_3139 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. XCR_3140 SM00671 Sel1-like repeats. XCR_3155 SM00382 ATPases associated with a variety of cellular activities XCR_3168 SM00116 Domain in cystathionine beta-synthase and other proteins. XCR_3172 SM00382 ATPases associated with a variety of cellular activities XCR_3181 SM00924 MgtE intracellular N domain XCR_3187 SM00656 XCR_3187 XCR_3190 SM00421 helix_turn_helix, Lux Regulon XCR_3201 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. XCR_3206 SM00422 helix_turn_helix, mercury resistance XCR_3223 SM00387 Histidine kinase-like ATPases XCR_3223 SM00388 His Kinase A (phosphoacceptor) domain XCR_3223 SM00448 cheY-homologous receiver domain XCR_3224 SM00387 Histidine kinase-like ATPases XCR_3224 SM00388 His Kinase A (phosphoacceptor) domain XCR_3224 SM00448 cheY-homologous receiver domain XCR_3225 SM00387 Histidine kinase-like ATPases XCR_3225 SM00388 His Kinase A (phosphoacceptor) domain XCR_3225 SM00448 cheY-homologous receiver domain XCR_3226 SM00867 YceI-like domain XCR_3228 SM00867 YceI-like domain XCR_3239 SM00116 Domain in cystathionine beta-synthase and other proteins. XCR_3258 SM00244 prohibitin homologues XCR_3270 SM00812 Alpha-L-fucosidase XCR_3271 SM00636 XCR_3271 XCR_3274 SM00758 XCR_3274 XCR_3274 SM01217 XCR_3274 XCR_3275 SM01149 XCR_3275 XCR_3282 SM00327 von Willebrand factor (vWF) type A domain XCR_3288 SM00073 Histidine Phosphotransfer domain XCR_3288 SM00260 Two component signalling adaptor domain XCR_3288 SM00387 Histidine kinase-like ATPases XCR_3288 SM00448 cheY-homologous receiver domain XCR_3288 SM01231 XCR_3288 XCR_3289 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_3290 SM00260 Two component signalling adaptor domain XCR_3291 SM00448 cheY-homologous receiver domain XCR_3292 SM00448 cheY-homologous receiver domain XCR_3301 SM00491 XCR_3301 XCR_3306 SM00954 Region found in RelA / SpoT proteins XCR_3316 SM00382 ATPases associated with a variety of cellular activities XCR_3316 SM00487 DEAD-like helicases superfamily XCR_3316 SM00490 helicase superfamily c-terminal domain XCR_3316 SM00847 Helicase associated domain (HA2) Add an annotation XCR_3319 SM00341 Helicase and RNase D C-terminal XCR_3319 SM00487 DEAD-like helicases superfamily XCR_3319 SM00490 helicase superfamily c-terminal domain XCR_3319 SM00956 XCR_3319 XCR_3324 SM00363 S4 RNA-binding domain XCR_3332 SM00448 cheY-homologous receiver domain XCR_3333 SM00091 PAS domain XCR_3333 SM00911 HWE histidine kinase XCR_3345 SM00382 ATPases associated with a variety of cellular activities XCR_3346 SM00860 SMI1 / KNR4 family XCR_3348 SM00278 Helix-hairpin-helix DNA-binding motif class 1 XCR_3356 SM00834 Putative regulatory protein XCR_3371 SM00382 ATPases associated with a variety of cellular activities XCR_3395 SM00855 Phosphoglycerate mutase family XCR_3408 SM00382 ATPases associated with a variety of cellular activities XCR_3408 SM01086 C-terminal, D2-small domain, of ClpB protein XCR_3424 SM00564 beta-propeller repeat XCR_3425 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_3425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_3437 SM00881 CoA binding domain XCR_3439 SM00387 Histidine kinase-like ATPases XCR_3439 SM00388 His Kinase A (phosphoacceptor) domain XCR_3440 SM00382 ATPases associated with a variety of cellular activities XCR_3440 SM00448 cheY-homologous receiver domain XCR_3452 SM00387 Histidine kinase-like ATPases XCR_3452 SM00388 His Kinase A (phosphoacceptor) domain XCR_3453 SM00448 cheY-homologous receiver domain XCR_3453 SM00862 Transcriptional regulatory protein, C terminal XCR_3456 SM00642 Alpha-amylase domain XCR_3458 SM00528 Domain in histone-like proteins of HNS family XCR_3476 SM00974 XCR_3476 XCR_3485 SM00869 Autotransporter beta-domain XCR_3497 SM00354 helix_turn _helix lactose operon repressor XCR_3498 SM00060 Fibronectin type 3 domain XCR_3504 SM00967 RNA 2'-O ribose methyltransferase substrate binding XCR_3518 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XCR_3518 SM00387 Histidine kinase-like ATPases XCR_3525 SM00506 Appr-1"-p processing enzyme XCR_3534 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XCR_3539 SM00849 Metallo-beta-lactamase superfamily XCR_3542 SM00382 ATPases associated with a variety of cellular activities XCR_3543 SM00903 Flavin reductase like domain XCR_3558 SM00861 Transketolase, pyrimidine binding domain XCR_3563 SM00028 Tetratricopeptide repeats XCR_3563 SM00327 von Willebrand factor (vWF) type A domain XCR_3564 SM00327 von Willebrand factor (vWF) type A domain XCR_3567 SM00382 ATPases associated with a variety of cellular activities XCR_3568 SM00965 Secretin and TonB N terminus short domain XCR_3578 SM00487 DEAD-like helicases superfamily XCR_3578 SM00490 helicase superfamily c-terminal domain XCR_3580 SM00858 XCR_3580 XCR_3582 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XCR_3585 SM01130 XCR_3585 XCR_3587 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XCR_3587 SM00954 Region found in RelA / SpoT proteins XCR_3588 SM01409 XCR_3588 XCR_3590 SM00072 Guanylate kinase homologues. XCR_3595 SM00729 Elongator protein 3, MiaB family, Radical SAM XCR_3600 SM01011 Aminopeptidase P, N-terminal domain XCR_3615 SM00028 Tetratricopeptide repeats XCR_3615 SM00421 helix_turn_helix, Lux Regulon XCR_3632 SM00464 Found in ATP-dependent protease La (LON) XCR_3646 SM00342 helix_turn_helix, arabinose operon control protein XCR_3652 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_3659 SM00917 LeuA allosteric (dimerisation) domain XCR_3661 SM01329 XCR_3661 XCR_3666 SM00267 diguanylate cyclase XCR_3678 SM00919 Malic enzyme, NAD binding domain XCR_3678 SM01274 XCR_3678 XCR_3682 SM00387 Histidine kinase-like ATPases XCR_3682 SM00388 His Kinase A (phosphoacceptor) domain XCR_3682 SM00448 cheY-homologous receiver domain XCR_3684 SM00421 helix_turn_helix, Lux Regulon XCR_3684 SM00448 cheY-homologous receiver domain XCR_3687 SM00387 Histidine kinase-like ATPases XCR_3687 SM00388 His Kinase A (phosphoacceptor) domain XCR_3688 SM00448 cheY-homologous receiver domain XCR_3688 SM00862 Transcriptional regulatory protein, C terminal XCR_3693 SM00354 helix_turn _helix lactose operon repressor XCR_3697 SM00642 Alpha-amylase domain XCR_3699 SM01154 XCR_3699 XCR_3706 SM00450 Rhodanese Homology Domain XCR_3722 SM00345 helix_turn_helix gluconate operon transcriptional repressor XCR_3725 SM00829 Enoylreductase XCR_3731 SM00448 cheY-homologous receiver domain XCR_3731 SM00862 Transcriptional regulatory protein, C terminal XCR_3732 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_3732 SM00387 Histidine kinase-like ATPases XCR_3732 SM00388 His Kinase A (phosphoacceptor) domain XCR_3749 SM00245 tail specific protease XCR_3752 SM00354 helix_turn _helix lactose operon repressor XCR_3754 SM00345 helix_turn_helix gluconate operon transcriptional repressor XCR_3754 SM00866 XCR_3754 XCR_3764 SM00382 ATPases associated with a variety of cellular activities XCR_3769 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. XCR_3774 SM00387 Histidine kinase-like ATPases XCR_3774 SM00388 His Kinase A (phosphoacceptor) domain XCR_3774 SM00448 cheY-homologous receiver domain XCR_3775 SM00448 cheY-homologous receiver domain XCR_3776 SM00387 Histidine kinase-like ATPases XCR_3776 SM00388 His Kinase A (phosphoacceptor) domain XCR_3777 SM00749 bacterial OsmY and nodulation domain XCR_3779 SM01350 XCR_3779 XCR_3790 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XCR_3790 SM00245 tail specific protease XCR_3791 SM00729 Elongator protein 3, MiaB family, Radical SAM XCR_3796 SM00936 Penicillin-binding protein 5, C-terminal domain XCR_3799 SM00710 Parallel beta-helix repeats XCR_3806 SM00268 Actin XCR_3809 SM00382 ATPases associated with a variety of cellular activities XCR_3814 SM00062 Bacterial periplasmic substrate-binding proteins XCR_3814 SM00248 ankyrin repeats XCR_3815 SM00564 beta-propeller repeat XCR_3820 SM01263 XCR_3820 XCR_3821 SM00267 diguanylate cyclase XCR_3828 SM00382 ATPases associated with a variety of cellular activities XCR_3828 SM01086 C-terminal, D2-small domain, of ClpB protein XCR_3848 SM00448 cheY-homologous receiver domain XCR_3848 SM00850 LytTr DNA-binding domain XCR_3857 SM00267 diguanylate cyclase XCR_3859 SM00637 XCR_3859 XCR_3861 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_3861 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_3861 SM01049 XCR_3861 XCR_3863 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XCR_3863 SM00091 PAS domain XCR_3863 SM00267 diguanylate cyclase XCR_3865 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XCR_3868 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain XCR_3868 SM01232 XCR_3868 XCR_3878 SM00062 Bacterial periplasmic substrate-binding proteins XCR_3888 SM00267 diguanylate cyclase XCR_3919 SM01321 XCR_3919 XCR_3922 SM01321 XCR_3922 XCR_3931 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_3931 SM00331 Sigma factor PP2C-like phosphatases XCR_3935 SM00345 helix_turn_helix gluconate operon transcriptional repressor XCR_3935 SM00895 XCR_3935 XCR_3937 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XCR_3947 SM00867 YceI-like domain XCR_3961 SM00965 Secretin and TonB N terminus short domain XCR_3980 SM00883 Chaperonin 10 Kd subunit XCR_3988 SM00878 Biotin carboxylase C-terminal domain XCR_3996 SM00530 Helix-turn-helix XRE-family like proteins XCR_4002 SM00563 Phosphate acyltransferases XCR_4006 SM00195 Dual specificity phosphatase, catalytic domain XCR_4009 SM00798 AICARFT/IMPCHase bienzyme XCR_4009 SM00851 MGS-like domain XCR_4010 SM01209 XCR_4010 XCR_4010 SM01210 XCR_4010 XCR_4015 SM00563 Phosphate acyltransferases XCR_4026 SM00052 Putative diguanylate phosphodiesterase XCR_4026 SM00267 diguanylate cyclase XCR_4026 SM00448 cheY-homologous receiver domain XCR_4027 SM00073 Histidine Phosphotransfer domain XCR_4027 SM00387 Histidine kinase-like ATPases XCR_4027 SM00388 His Kinase A (phosphoacceptor) domain XCR_4027 SM00448 cheY-homologous receiver domain XCR_4040 SM00419 helix_turn_helix, cAMP Regulatory protein XCR_4044 SM00903 Flavin reductase like domain XCR_4049 SM00046 Diacylglycerol kinase catalytic domain (presumed) XCR_4053 SM00271 DnaJ molecular chaperone homology domain XCR_4074 SM00347 helix_turn_helix multiple antibiotic resistance protein XCR_4081 SM00861 Transketolase, pyrimidine binding domain XCR_4082 SM00326 Src homology 3 domains XCR_4086 SM00487 DEAD-like helicases superfamily XCR_4086 SM00490 helicase superfamily c-terminal domain XCR_4088 SM00822 XCR_4088 XCR_4098 SM00642 Alpha-amylase domain XCR_4100 SM00642 Alpha-amylase domain XCR_4102 SM00642 Alpha-amylase domain XCR_4103 SM00642 Alpha-amylase domain XCR_4105 SM00267 diguanylate cyclase XCR_4124 SM00729 Elongator protein 3, MiaB family, Radical SAM XCR_4124 SM00876 Biotin and Thiamin Synthesis associated domain XCR_4137 SM01228 XCR_4137 XCR_4141 SM00090 RIO-like kinase XCR_4142 SM00346 helix_turn_helix isocitrate lyase regulation XCR_4146 SM00998 Adenylosuccinate lyase C-terminus XCR_4150 SM00882 Coenzyme A transferase XCR_4151 SM00882 Coenzyme A transferase XCR_4154 SM00420 helix_turn_helix, Deoxyribose operon repressor XCR_4154 SM01134 XCR_4154 XCR_4160 SM00342 helix_turn_helix, arabinose operon control protein XCR_4164 SM00347 helix_turn_helix multiple antibiotic resistance protein XCR_4165 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XCR_4183 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_4222 SM00155 Phospholipase D. Active site motifs. XCR_4234 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XCR_4234 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XCR_4235 SM00487 DEAD-like helicases superfamily XCR_4235 SM00490 helicase superfamily c-terminal domain XCR_4235 SM00847 Helicase associated domain (HA2) Add an annotation XCR_4241 SM00829 Enoylreductase XCR_4248 SM00347 helix_turn_helix multiple antibiotic resistance protein XCR_4255 SM00833 Cobalamin synthesis protein cobW C-terminal domain XCR_4264 SM00953 XCR_4264 XCR_4270 SM00878 Biotin carboxylase C-terminal domain XCR_4274 SM00100 Cyclic nucleotide-monophosphate binding domain XCR_4274 SM00267 diguanylate cyclase XCR_4295 SM00563 Phosphate acyltransferases XCR_4318 SM00382 ATPases associated with a variety of cellular activities XCR_4318 SM00448 cheY-homologous receiver domain XCR_4319 SM00387 Histidine kinase-like ATPases XCR_4319 SM00388 His Kinase A (phosphoacceptor) domain XCR_4325 SM00450 Rhodanese Homology Domain XCR_4340 SM00382 ATPases associated with a variety of cellular activities XCR_4340 SM00448 cheY-homologous receiver domain XCR_4341 SM00387 Histidine kinase-like ATPases XCR_4341 SM00388 His Kinase A (phosphoacceptor) domain XCR_4343 SM00938 Nitrogen regulatory protein P-II XCR_4344 SM01230 XCR_4344 XCR_4350 SM00028 Tetratricopeptide repeats XCR_4352 SM00563 Phosphate acyltransferases XCR_4354 SM00155 Phospholipase D. Active site motifs. XCR_4355 SM00867 YceI-like domain XCR_4356 SM00855 Phosphoglycerate mutase family XCR_4369 SM00382 ATPases associated with a variety of cellular activities XCR_4373 SM00382 ATPases associated with a variety of cellular activities XCR_4380 SM00344 helix_turn_helix ASNC type XCR_4389 SM00354 helix_turn _helix lactose operon repressor XCR_4404 SM00642 Alpha-amylase domain XCR_4405 SM00642 Alpha-amylase domain XCR_4406 SM00642 Alpha-amylase domain XCR_4422 SM00354 helix_turn _helix lactose operon repressor XCR_4425 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XCR_4427 SM00758 XCR_4427 XCR_4427 SM01217 XCR_4427 XCR_4433 SM00612 XCR_4433 XCR_4437 SM00633 Glycosyl hydrolase family 10 XCR_4440 SM00633 Glycosyl hydrolase family 10 XCR_4457 SM00829 Enoylreductase XCR_4458 SM00563 Phosphate acyltransferases XCR_4460 SM00354 helix_turn _helix lactose operon repressor XCR_4466 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family XCR_4478 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XCR_4478 SM00388 His Kinase A (phosphoacceptor) domain XCR_4482 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain XCR_4482 SM01232 XCR_4482 XCR_4489 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XCR_4489 SM00091 PAS domain XCR_4505 SM00347 helix_turn_helix multiple antibiotic resistance protein XCR_4515 SM00155 Phospholipase D. Active site motifs. XCR_4527 SM00530 Helix-turn-helix XRE-family like proteins XCR_4530 SM00487 DEAD-like helicases superfamily XCR_4530 SM00490 helicase superfamily c-terminal domain XCR_4538 SM00530 Helix-turn-helix XRE-family like proteins XCR_4545 SM00237 Domains in Na-Ca exchangers and integrin-beta4 XCR_4545 SM00736 Dystroglycan-type cadherin-like domains. XCR_4545 SM00869 Autotransporter beta-domain XCR_4551 SM00382 ATPases associated with a variety of cellular activities XCR_4564 SM00829 Enoylreductase XCR_4574 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XCR_4574 SM00091 PAS domain XCR_4574 SM00267 diguanylate cyclase XCR_4591 SM00014 Acid phosphatase homologues XCR_4595 SM00028 Tetratricopeptide repeats