locus-tag class description XCV0001 PF00308 Bacterial dnaA protein XCV0001 PF08299 Bacterial dnaA protein helix-turn-helix XCV0001 PF11638 DnaA N-terminal domain XCV0002 PF02768 DNA polymerase III beta subunit, C-terminal domain XCV0002 PF00712 DNA polymerase III beta subunit, N-terminal domain XCV0002 PF02767 DNA polymerase III beta subunit, central domain XCV0003 PF02463 RecF/RecN/SMC N terminal domain XCV0004 PF00204 DNA gyrase B XCV0004 PF00986 DNA gyrase B subunit, carboxyl terminus XCV0004 PF18053 DNA gyrase B subunit insert domain XCV0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV0004 PF01751 Toprim domain XCV0006 PF01435 Peptidase family M48 XCV0008 PF03544 Gram-negative bacterial TonB protein C-terminal XCV0009 PF01618 MotA/TolQ/ExbB proton channel family XCV0010 PF02472 Biopolymer transport protein ExbD/TolR XCV0011 PF02472 Biopolymer transport protein ExbD/TolR XCV0012 PF02472 Biopolymer transport protein ExbD/TolR XCV0013 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ XCV0015 PF13091 PLD-like domain XCV0015 PF13396 Phospholipase_D-nuclease N-terminal XCV0018 PF04055 Radical SAM superfamily XCV0020 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) XCV0023 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XCV0023 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XCV0024 PF13180 PDZ domain XCV0024 PF03572 Peptidase family S41 XCV0025 PF01551 Peptidase family M23 XCV0027 PF04389 Peptidase family M28 XCV0029 PF00150 Cellulase (glycosyl hydrolase family 5) XCV0031 PF00150 Cellulase (glycosyl hydrolase family 5) XCV0033 PF00150 Cellulase (glycosyl hydrolase family 5) XCV0034 PF00107 Zinc-binding dehydrogenase XCV0034 PF08240 Alcohol dehydrogenase GroES-like domain XCV0036 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCV0036 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster XCV0037 PF00310 Glutamine amidotransferases class-II XCV0037 PF01493 GXGXG motif XCV0037 PF04898 Glutamate synthase central domain XCV0037 PF01645 Conserved region in glutamate synthase XCV0041 PF01804 Penicillin amidase XCV0042 PF01804 Penicillin amidase XCV0044 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV0044 PF03466 LysR substrate binding domain XCV0055 PF00270 DEAD/DEAH box helicase XCV0055 PF00271 Helicase conserved C-terminal domain XCV0055 PF09369 Domain of unknown function (DUF1998) XCV0056 PF03006 Haemolysin-III related XCV0059 PF00106 short chain dehydrogenase XCV0063 PF03793 PASTA domain XCV0063 PF00069 Protein kinase domain XCV0065 PF01527 Transposase XCV0066 PF13276 HTH-like domain XCV0066 PF13683 Integrase core domain XCV0071 PF05532 CsbD-like XCV0075 PF16485 Protealysin propeptide XCV0075 PF01447 Thermolysin metallopeptidase, catalytic domain XCV0075 PF02868 Thermolysin metallopeptidase, alpha-helical domain XCV0077 PF13344 Haloacid dehalogenase-like hydrolase XCV0077 PF00293 NUDIX domain XCV0080 PF00085 Thioredoxin XCV0081 PF08946 Osmosensory transporter coiled coil XCV0081 PF00083 Sugar (and other) transporter XCV0089 PF07726 ATPase family associated with various cellular activities (AAA) XCV0089 PF17863 AAA lid domain XCV0098 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain XCV0101 PF00155 Aminotransferase class I and II XCV0102 PF07715 TonB-dependent Receptor Plug Domain XCV0102 PF00593 TonB dependent receptor XCV0105 PF00171 Aldehyde dehydrogenase family XCV0109 PF02735 Ku70/Ku80 beta-barrel domain XCV0110 PF01070 FMN-dependent dehydrogenase XCV0113 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family XCV0114 PF07730 Histidine kinase XCV0115 PF00072 Response regulator receiver domain XCV0115 PF00196 Bacterial regulatory proteins, luxR family XCV0119 PF18500 CadC C-terminal domain 1 XCV0119 PF00486 Transcriptional regulatory protein, C terminal XCV0120 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase XCV0120 PF07055 Enoyl reductase FAD binding domain XCV0120 PF12241 Trans-2-enoyl-CoA reductase catalytic region XCV0122 PF00294 pfkB family carbohydrate kinase XCV0125 PF13683 Integrase core domain XCV0125 PF13276 HTH-like domain XCV0126 PF01527 Transposase XCV0129 PF05598 Transposase domain (DUF772) XCV0129 PF01609 Transposase DDE domain XCV0139 PF00128 Alpha amylase, catalytic domain XCV0139 PF11896 Domain of unknown function (DUF3416) XCV0140 PF00128 Alpha amylase, catalytic domain XCV0140 PF16657 Maltogenic Amylase, C-terminal domain XCV0141 PF02806 Alpha amylase, C-terminal all-beta domain XCV0141 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCV0141 PF00128 Alpha amylase, catalytic domain XCV0143 PF00248 Aldo/keto reductase family XCV0144 PF00135 Carboxylesterase family XCV0145 PF07859 alpha/beta hydrolase fold XCV0145 PF13472 GDSL-like Lipase/Acylhydrolase family XCV0147 PF03480 Bacterial extracellular solute-binding protein, family 7 XCV0149 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component XCV0150 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XCV0150 PF04616 Glycosyl hydrolases family 43 XCV0151 PF00356 Bacterial regulatory proteins, lacI family XCV0152 PF04962 KduI/IolB family XCV0155 PF00657 GDSL-like Lipase/Acylhydrolase XCV0157 PF00351 Biopterin-dependent aromatic amino acid hydroxylase XCV0158 PF01037 Lrp/AsnC ligand binding domain XCV0159 PF07660 Secretin and TonB N terminus short domain XCV0159 PF07715 TonB-dependent Receptor Plug Domain XCV0159 PF00593 TonB dependent receptor XCV0160 PF01734 Patatin-like phospholipase XCV0161 PF01546 Peptidase family M20/M25/M40 XCV0161 PF07687 Peptidase dimerisation domain XCV0163 PF00005 ABC transporter XCV0166 PF00005 ABC transporter XCV0167 PF00528 Binding-protein-dependent transport system inner membrane component XCV0169 PF03781 Sulfatase-modifying factor enzyme 1 XCV0169 PF12867 DinB superfamily XCV0175 PF01883 Iron-sulfur cluster assembly protein XCV0175 PF10609 NUBPL iron-transfer P-loop NTPase XCV0178 PF13091 PLD-like domain XCV0179 PF03061 Thioesterase superfamily XCV0185 PF08240 Alcohol dehydrogenase GroES-like domain XCV0185 PF00107 Zinc-binding dehydrogenase XCV0187 PF02673 Bacitracin resistance protein BacA XCV0188 PF03951 Glutamine synthetase, beta-Grasp domain XCV0188 PF00120 Glutamine synthetase, catalytic domain XCV0189 PF00543 Nitrogen regulatory protein P-II XCV0190 PF00909 Ammonium Transporter Family XCV0191 PF00512 His Kinase A (phospho-acceptor) domain XCV0191 PF00989 PAS fold XCV0191 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV0192 PF00158 Sigma-54 interaction domain XCV0192 PF02954 Bacterial regulatory protein, Fis family XCV0192 PF00072 Response regulator receiver domain XCV0193 PF00080 Copper/zinc superoxide dismutase (SODC) XCV0194 PF00080 Copper/zinc superoxide dismutase (SODC) XCV0196 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XCV0198 PF02803 Thiolase, C-terminal domain XCV0198 PF00108 Thiolase, N-terminal domain XCV0205 PF00581 Rhodanese-like domain XCV0206 PF02556 Preprotein translocase subunit SecB XCV0207 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XCV0207 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus XCV0222 PF13276 HTH-like domain XCV0222 PF13683 Integrase core domain XCV0223 PF01527 Transposase XCV0229 PF01527 Transposase XCV0230 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XCV0230 PF00205 Thiamine pyrophosphate enzyme, central domain XCV0230 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XCV0231 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV0231 PF00512 His Kinase A (phospho-acceptor) domain XCV0232 PF00072 Response regulator receiver domain XCV0232 PF02954 Bacterial regulatory protein, Fis family XCV0232 PF00158 Sigma-54 interaction domain XCV0235 PF07690 Major Facilitator Superfamily XCV0236 PF00588 SpoU rRNA Methylase family XCV0239 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XCV0239 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XCV0240 PF13784 Fic/DOC family N-terminal XCV0240 PF02661 Fic/DOC family XCV0241 PF00561 alpha/beta hydrolase fold XCV0242 PF03692 Putative zinc- or iron-chelating domain XCV0243 PF00501 AMP-binding enzyme XCV0244 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XCV0246 PF01820 D-ala D-ala ligase N-terminus XCV0246 PF07478 D-ala D-ala ligase C-terminus XCV0248 PF03109 ABC1 family XCV0250 PF00849 RNA pseudouridylate synthase XCV0252 PF00472 RF-1 domain XCV0254 PF01112 Asparaginase XCV0255 PF01432 Peptidase family M3 XCV0256 PF00106 short chain dehydrogenase XCV0257 PF12706 Beta-lactamase superfamily domain XCV0260 PF12833 Helix-turn-helix domain XCV0261 PF00999 Sodium/hydrogen exchanger family XCV0263 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV0263 PF03466 LysR substrate binding domain XCV0264 PF01274 Malate synthase XCV0265 PF00463 Isocitrate lyase family XCV0266 PF00990 Diguanylate cyclase, GGDEF domain XCV0270 PF00326 Prolyl oligopeptidase family XCV0271 PF02785 Biotin carboxylase C-terminal domain XCV0271 PF00289 Biotin carboxylase, N-terminal domain XCV0271 PF00364 Biotin-requiring enzyme XCV0271 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XCV0272 PF01039 Carboxyl transferase domain XCV0273 PF02770 Acyl-CoA dehydrogenase, middle domain XCV0273 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCV0273 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCV0284 PF02492 CobW/HypB/UreG, nucleotide-binding domain XCV0284 PF07683 Cobalamin synthesis protein cobW C-terminal domain XCV0288 PF03969 AFG1-like ATPase XCV0289 PF01047 MarR family XCV0290 PF02566 OsmC-like protein XCV0295 PF16884 N-terminal domain of oxidoreductase XCV0295 PF00107 Zinc-binding dehydrogenase XCV0298 PF00849 RNA pseudouridylate synthase XCV0300 PF08482 ATP-dependent helicase C-terminal XCV0300 PF00271 Helicase conserved C-terminal domain XCV0300 PF04408 Helicase associated domain (HA2) XCV0300 PF00270 DEAD/DEAH box helicase XCV0302 PF07308 Protein of unknown function (DUF1456) XCV0303 PF00576 HIUase/Transthyretin family XCV0304 PF13454 FAD-NAD(P)-binding XCV0305 PF09349 OHCU decarboxylase XCV0305 PF01014 Uricase XCV0308 PF00266 Aminotransferase class-V XCV0309 PF07687 Peptidase dimerisation domain XCV0309 PF01546 Peptidase family M20/M25/M40 XCV0311 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV0311 PF03466 LysR substrate binding domain XCV0312 PF00561 alpha/beta hydrolase fold XCV0315 PF01425 Amidase XCV0316 PF01156 Inosine-uridine preferring nucleoside hydrolase XCV0318 PF00860 Permease family XCV0319 PF00111 2Fe-2S iron-sulfur cluster binding domain XCV0320 PF00355 Rieske [2Fe-2S] domain XCV0321 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV0321 PF03466 LysR substrate binding domain XCV0322 PF01026 TatD related DNase XCV0325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV0325 PF03466 LysR substrate binding domain XCV0326 PF07690 Major Facilitator Superfamily XCV0328 PF00561 alpha/beta hydrolase fold XCV0328 PF08386 TAP-like protein XCV0329 PF02146 Sir2 family XCV0330 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XCV0331 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XCV0331 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XCV0333 PF00551 Formyl transferase XCV0334 PF00072 Response regulator receiver domain XCV0334 PF00486 Transcriptional regulatory protein, C terminal XCV0335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV0335 PF00672 HAMP domain XCV0335 PF00512 His Kinase A (phospho-acceptor) domain XCV0336 PF00529 HlyD membrane-fusion protein of T1SS XCV0336 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCV0337 PF00873 AcrB/AcrD/AcrF family XCV0338 PF02321 Outer membrane efflux protein XCV0341 PF02677 Epoxyqueuosine reductase QueH XCV0342 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV0342 PF03466 LysR substrate binding domain XCV0343 PF03358 NADPH-dependent FMN reductase XCV0345 PF08267 Cobalamin-independent synthase, N-terminal domain XCV0345 PF01717 Cobalamin-independent synthase, Catalytic domain XCV0346 PF03812 2-keto-3-deoxygluconate permease XCV0349 PF05368 NmrA-like family XCV0350 PF01638 HxlR-like helix-turn-helix XCV0354 PF13333 Integrase core domain XCV0354 PF00665 Integrase core domain XCV0354 PF13276 HTH-like domain XCV0356 PF13495 Phage integrase, N-terminal SAM-like domain XCV0356 PF00589 Phage integrase family XCV0357 PF00920 Dehydratase family XCV0360 PF00132 Bacterial transferase hexapeptide (six repeats) XCV0362 PF07690 Major Facilitator Superfamily XCV0363 PF01966 HD domain XCV0363 PF11871 Domain of unknown function (DUF3391) XCV0367 PF00171 Aldehyde dehydrogenase family XCV0369 PF01494 FAD binding domain XCV0372 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XCV0372 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XCV0373 PF00230 Major intrinsic protein XCV0374 PF16901 C-terminal domain of alpha-glycerophosphate oxidase XCV0374 PF01266 FAD dependent oxidoreductase XCV0375 PF00455 DeoR C terminal sensor domain XCV0375 PF08220 DeoR-like helix-turn-helix domain XCV0377 PF00355 Rieske [2Fe-2S] domain XCV0378 PF01144 Coenzyme A transferase XCV0379 PF01144 Coenzyme A transferase XCV0380 PF00108 Thiolase, N-terminal domain XCV0380 PF02803 Thiolase, C-terminal domain XCV0381 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal XCV0381 PF00775 Dioxygenase XCV0383 PF00206 Lyase XCV0383 PF10397 Adenylosuccinate lyase C-terminus XCV0384 PF12146 Serine aminopeptidase, S33 XCV0385 PF02627 Carboxymuconolactone decarboxylase family XCV0387 PF01614 Bacterial transcriptional regulator XCV0387 PF09339 IclR helix-turn-helix domain XCV0389 PF07859 alpha/beta hydrolase fold XCV0390 PF10677 Protein of unknown function (DUF2490) XCV0391 PF13932 GidA associated domain XCV0391 PF01134 Glucose inhibited division protein A XCV0394 PF13291 ACT domain XCV0394 PF00291 Pyridoxal-phosphate dependent enzyme XCV0398 PF13649 Methyltransferase domain XCV0399 PF00106 short chain dehydrogenase XCV0400 PF12697 Alpha/beta hydrolase family XCV0402 PF00155 Aminotransferase class I and II XCV0403 PF04055 Radical SAM superfamily XCV0403 PF06968 Biotin and Thiamin Synthesis associated domain XCV0405 PF01040 UbiA prenyltransferase family XCV0411 PF05819 NolX protein XCV0421 PF01313 Bacterial export proteins, family 3 XCV0422 PF00813 FliP family XCV0425 PF00771 FHIPEP family XCV0426 PF01312 FlhB HrpN YscU SpaS Family XCV0429 PF01514 Secretory protein of YscJ/FliF family XCV0432 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCV0432 PF02874 ATP synthase alpha/beta family, beta-barrel domain XCV0432 PF18269 T3SS EscN ATPase C-terminal domain XCV0434 PF01311 Bacterial export proteins, family 1 XCV0438 PF01527 Transposase XCV0439 PF13683 Integrase core domain XCV0439 PF13276 HTH-like domain XCV0441 PF01464 Transglycosylase SLT domain XCV0445 PF12794 Mechanosensitive ion channel inner membrane domain 1 XCV0445 PF12795 Mechanosensitive ion channel porin domain XCV0445 PF00924 Mechanosensitive ion channel XCV0446 PF00884 Sulfatase XCV0448 PF03109 ABC1 family XCV0449 PF05661 Protein of unknown function (DUF808) XCV0450 PF00990 Diguanylate cyclase, GGDEF domain XCV0450 PF00072 Response regulator receiver domain XCV0451 PF00534 Glycosyl transferases group 1 XCV0451 PF08323 Starch synthase catalytic domain XCV0452 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCV0452 PF00128 Alpha amylase, catalytic domain XCV0452 PF02806 Alpha amylase, C-terminal all-beta domain XCV0453 PF00128 Alpha amylase, catalytic domain XCV0453 PF11941 Domain of unknown function (DUF3459) XCV0453 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCV0454 PF02446 4-alpha-glucanotransferase XCV0455 PF00128 Alpha amylase, catalytic domain XCV0457 PF00128 Alpha amylase, catalytic domain XCV0457 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCV0458 PF13460 NAD(P)H-binding XCV0462 PF06903 VirK protein XCV0463 PF02321 Outer membrane efflux protein XCV0466 PF00873 AcrB/AcrD/AcrF family XCV0470 PF00270 DEAD/DEAH box helicase XCV0470 PF00271 Helicase conserved C-terminal domain XCV0471 PF03421 YopJ Serine/Threonine acetyltransferase XCV0473 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XCV0473 PF00364 Biotin-requiring enzyme XCV0473 PF02817 e3 binding domain XCV0475 PF02779 Transketolase, pyrimidine binding domain XCV0475 PF02780 Transketolase, C-terminal domain XCV0476 PF00676 Dehydrogenase E1 component XCV0478 PF03301 Tryptophan 2,3-dioxygenase XCV0479 PF00854 POT family XCV0481 PF01047 MarR family XCV0482 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XCV0483 PF04480 Protein of unknown function (DUF559) XCV0484 PF04209 homogentisate 1,2-dioxygenase XCV0487 PF03334 Na+/H+ antiporter subunit XCV0488 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) XCV0489 PF01899 Na+/H+ ion antiporter subunit XCV0490 PF00361 Proton-conducting membrane transporter XCV0491 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XCV0492 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter XCV0492 PF00361 Proton-conducting membrane transporter XCV0492 PF13244 Domain of unknown function (DUF4040) XCV0492 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XCV0495 PF02868 Thermolysin metallopeptidase, alpha-helical domain XCV0495 PF01483 Proprotein convertase P-domain XCV0495 PF07504 Fungalysin/Thermolysin Propeptide Motif XCV0495 PF01447 Thermolysin metallopeptidase, catalytic domain XCV0496 PF00182 Chitinase class I XCV0500 PF01259 SAICAR synthetase XCV0501 PF05099 Tellurite resistance protein TerB XCV0501 PF00226 DnaJ domain XCV0502 PF00834 Ribulose-phosphate 3 epimerase family XCV0503 PF00583 Acetyltransferase (GNAT) family XCV0504 PF00781 Diacylglycerol kinase catalytic domain XCV0505 PF04715 Anthranilate synthase component I, N terminal region XCV0505 PF00425 chorismate binding enzyme XCV0509 PF12008 Type I restriction and modification enzyme - subunit R C terminal XCV0509 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) XCV0509 PF18766 SWI2/SNF2 ATPase XCV0510 PF01420 Type I restriction modification DNA specificity domain XCV0513 PF12161 HsdM N-terminal domain XCV0513 PF02384 N-6 DNA Methylase XCV0514 PF00117 Glutamine amidotransferase class-I XCV0516 PF02885 Glycosyl transferase family, helical bundle domain XCV0516 PF00591 Glycosyl transferase family, a/b domain XCV0517 PF00218 Indole-3-glycerol phosphate synthase XCV0519 PF00027 Cyclic nucleotide-binding domain XCV0519 PF00325 Bacterial regulatory proteins, crp family XCV0520 PF02675 S-adenosylmethionine decarboxylase XCV0521 PF00893 Small Multidrug Resistance protein XCV0522 PF03232 Ubiquinone biosynthesis protein COQ7 XCV0523 PF00572 Ribosomal protein L13 XCV0524 PF00380 Ribosomal protein S9/S16 XCV0525 PF00293 NUDIX domain XCV0527 PF00210 Ferritin-like domain XCV0528 PF00512 His Kinase A (phospho-acceptor) domain XCV0528 PF00672 HAMP domain XCV0528 PF01627 Hpt domain XCV0528 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV0528 PF00072 Response regulator receiver domain XCV0528 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XCV0529 PF03707 Bacterial signalling protein N terminal repeat XCV0529 PF00990 Diguanylate cyclase, GGDEF domain XCV0529 PF00563 EAL domain XCV0534 PF01521 Iron-sulphur cluster biosynthesis XCV0537 PF09297 NADH pyrophosphatase zinc ribbon domain XCV0537 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain XCV0537 PF00293 NUDIX domain XCV0538 PF03186 CobD/Cbib protein XCV0538 PF17113 Regulatory signalling modulator protein AmpE XCV0543 PF07690 Major Facilitator Superfamily XCV0544 PF12805 FUSC-like inner membrane protein yccS XCV0545 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain XCV0545 PF02844 Phosphoribosylglycinamide synthetase, N domain XCV0545 PF02843 Phosphoribosylglycinamide synthetase, C domain XCV0547 PF02142 MGS-like domain XCV0547 PF01808 AICARFT/IMPCHase bienzyme XCV0548 PF01066 CDP-alcohol phosphatidyltransferase XCV0549 PF12146 Serine aminopeptidase, S33 XCV0549 PF12147 Putative methyltransferase XCV0550 PF00782 Dual specificity phosphatase, catalytic domain XCV0556 PF02954 Bacterial regulatory protein, Fis family XCV0558 PF01381 Helix-turn-helix XCV0563 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XCV0563 PF02785 Biotin carboxylase C-terminal domain XCV0563 PF00289 Biotin carboxylase, N-terminal domain XCV0565 PF00364 Biotin-requiring enzyme XCV0566 PF01220 Dehydroquinase class II XCV0567 PF11412 Disulphide bond corrector protein DsbC XCV0567 PF02683 Cytochrome C biogenesis protein transmembrane region XCV0568 PF03091 CutA1 divalent ion tolerance protein XCV0569 PF04231 Endonuclease I XCV0570 PF00166 Chaperonin 10 Kd subunit XCV0571 PF00118 TCP-1/cpn60 chaperonin family XCV0573 PF07715 TonB-dependent Receptor Plug Domain XCV0573 PF00593 TonB dependent receptor XCV0574 PF00793 DAHP synthetase I family XCV0577 PF08450 SMP-30/Gluconolactonase/LRE-like region XCV0579 PF08335 GlnD PII-uridylyltransferase XCV0579 PF03710 Glutamate-ammonia ligase adenylyltransferase XCV0580 PF02592 Putative vitamin uptake transporter XCV0587 PF00881 Nitroreductase family XCV0588 PF04264 YceI-like domain XCV0594 PF16957 Malonate decarboxylase, alpha subunit, transporter XCV0595 PF06857 Malonate decarboxylase delta subunit (MdcD) XCV0596 PF01039 Carboxyl transferase domain XCV0598 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG XCV0599 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase XCV0600 PF00698 Acyl transferase domain XCV0602 PF07729 FCD domain XCV0602 PF00392 Bacterial regulatory proteins, gntR family XCV0603 PF13419 Haloacid dehalogenase-like hydrolase XCV0610 PF07745 Glycosyl hydrolase family 53 XCV0611 PF00456 Transketolase, thiamine diphosphate binding domain XCV0611 PF17831 Pyruvate dehydrogenase E1 component middle domain XCV0612 PF00004 ATPase family associated with various cellular activities (AAA) XCV0618 PF13333 Integrase core domain XCV0618 PF00665 Integrase core domain XCV0618 PF13276 HTH-like domain XCV0619 PF01527 Transposase XCV0620 PF01527 Transposase XCV0622 PF01609 Transposase DDE domain XCV0622 PF05598 Transposase domain (DUF772) XCV0624 PF00106 short chain dehydrogenase XCV0625 PF13276 HTH-like domain XCV0625 PF13683 Integrase core domain XCV0626 PF01527 Transposase XCV0627 PF00106 short chain dehydrogenase XCV0635 PF00106 short chain dehydrogenase XCV0637 PF13409 Glutathione S-transferase, N-terminal domain XCV0644 PF07759 Protein of unknown function (DUF1615) XCV0645 PF00990 Diguanylate cyclase, GGDEF domain XCV0645 PF05230 MASE2 domain XCV0646 PF02082 Transcriptional regulator XCV0647 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCV0652 PF00892 EamA-like transporter family XCV0653 PF00497 Bacterial extracellular solute-binding proteins, family 3 XCV0656 PF00324 Amino acid permease XCV0658 PF01544 CorA-like Mg2+ transporter protein XCV0660 PF01204 Trehalase XCV0662 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XCV0662 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XCV0667 PF00563 EAL domain XCV0667 PF03707 Bacterial signalling protein N terminal repeat XCV0667 PF00990 Diguanylate cyclase, GGDEF domain XCV0669 PF02203 Tar ligand binding domain homologue XCV0669 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV0669 PF00672 HAMP domain XCV0670 PF00553 Cellulose binding domain XCV0670 PF00150 Cellulase (glycosyl hydrolase family 5) XCV0671 PF00916 Sulfate permease family XCV0671 PF01740 STAS domain XCV0672 PF00990 Diguanylate cyclase, GGDEF domain XCV0672 PF08448 PAS fold XCV0675 PF13632 Glycosyl transferase family group 2 XCV0677 PF07694 5TMR of 5TMR-LYT XCV0677 PF06580 Histidine kinase XCV0678 PF00072 Response regulator receiver domain XCV0678 PF04397 LytTr DNA-binding domain XCV0679 PF03900 Porphobilinogen deaminase, C-terminal domain XCV0679 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain XCV0685 PF00326 Prolyl oligopeptidase family XCV0685 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XCV0686 PF00155 Aminotransferase class I and II XCV0687 PF00326 Prolyl oligopeptidase family XCV0687 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XCV0688 PF04304 Protein of unknown function (DUF454) XCV0689 PF01678 Diaminopimelate epimerase XCV0691 PF00589 Phage integrase family XCV0691 PF02899 Phage integrase, N-terminal SAM-like domain XCV0692 PF00227 Proteasome subunit XCV0693 PF00004 ATPase family associated with various cellular activities (AAA) XCV0693 PF07724 AAA domain (Cdc48 subfamily) XCV0693 PF10431 C-terminal, D2-small domain, of ClpB protein XCV0695 PF13673 Acetyltransferase (GNAT) domain XCV0696 PF13533 Biotin-lipoyl like XCV0698 PF01209 ubiE/COQ5 methyltransferase family XCV0699 PF00990 Diguanylate cyclase, GGDEF domain XCV0699 PF03707 Bacterial signalling protein N terminal repeat XCV0699 PF00563 EAL domain XCV0700 PF11838 ERAP1-like C-terminal domain XCV0700 PF01433 Peptidase family M1 domain XCV0705 PF13276 HTH-like domain XCV0705 PF13333 Integrase core domain XCV0705 PF00665 Integrase core domain XCV0708 PF13360 PQQ-like domain XCV0709 PF13360 PQQ-like domain XCV0709 PF01011 PQQ enzyme repeat XCV0713 PF00107 Zinc-binding dehydrogenase XCV0713 PF08240 Alcohol dehydrogenase GroES-like domain XCV0715 PF00158 Sigma-54 interaction domain XCV0715 PF02954 Bacterial regulatory protein, Fis family XCV0715 PF01590 GAF domain XCV0716 PF00294 pfkB family carbohydrate kinase XCV0718 PF04085 rod shape-determining protein MreC XCV0720 PF00905 Penicillin binding protein transpeptidase domain XCV0720 PF03717 Penicillin-binding Protein dimerisation domain XCV0721 PF01098 Cell cycle protein XCV0722 PF00295 Glycosyl hydrolases family 28 XCV0723 PF13406 Transglycosylase SLT domain XCV0724 PF03330 Lytic transglycolase XCV0724 PF05036 Sporulation related domain XCV0725 PF00768 D-alanyl-D-alanine carboxypeptidase XCV0725 PF07943 Penicillin-binding protein 5, C-terminal domain XCV0727 PF04359 Protein of unknown function (DUF493) XCV0728 PF03099 Biotin/lipoate A/B protein ligase family XCV0729 PF04055 Radical SAM superfamily XCV0729 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family XCV0730 PF17804 Tail specific protease N-terminal domain XCV0730 PF00595 PDZ domain XCV0730 PF11818 C-terminal domain of tail specific protease (DUF3340) XCV0730 PF03572 Peptidase family S41 XCV0732 PF03466 LysR substrate binding domain XCV0732 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV0734 PF01467 Cytidylyltransferase-like XCV0734 PF00293 NUDIX domain XCV0741 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XCV0741 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain XCV0742 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XCV0742 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XCV0743 PF04972 BON domain XCV0744 PF00512 His Kinase A (phospho-acceptor) domain XCV0744 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV0744 PF01590 GAF domain XCV0744 PF00360 Phytochrome region XCV0744 PF08446 PAS fold XCV0745 PF00072 Response regulator receiver domain XCV0746 PF00512 His Kinase A (phospho-acceptor) domain XCV0746 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV0747 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XCV0756 PF00263 Bacterial type II and III secretion system protein XCV0756 PF03958 Bacterial type II/III secretion system short domain XCV0757 PF00437 Type II/IV secretion system protein XCV0758 PF00482 Type II secretion system (T2SS), protein F XCV0759 PF07963 Prokaryotic N-terminal methylation motif XCV0759 PF08334 Type II secretion system (T2SS), protein G XCV0760 PF12019 Type II transport protein GspH XCV0760 PF07963 Prokaryotic N-terminal methylation motif XCV0761 PF02501 Type II secretion system (T2SS), protein I XCV0761 PF07963 Prokaryotic N-terminal methylation motif XCV0762 PF11612 Type II secretion system (T2SS), protein J XCV0762 PF07963 Prokaryotic N-terminal methylation motif XCV0763 PF03934 Type II secretion system (T2SS), protein K XCV0768 PF07690 Major Facilitator Superfamily XCV0769 PF00356 Bacterial regulatory proteins, lacI family XCV0770 PF01380 SIS domain XCV0771 PF01979 Amidohydrolase family XCV0773 PF12627 Probable RNA and SrmB- binding site of polymerase A XCV0773 PF01743 Poly A polymerase head domain XCV0773 PF01966 HD domain XCV0774 PF00732 GMC oxidoreductase XCV0774 PF05199 GMC oxidoreductase XCV0775 PF00171 Aldehyde dehydrogenase family XCV0776 PF02028 BCCT, betaine/carnitine/choline family transporter XCV0778 PF01323 DSBA-like thioredoxin domain XCV0780 PF00034 Cytochrome c XCV0781 PF01926 50S ribosome-binding GTPase XCV0782 PF04107 Glutamate-cysteine ligase family 2(GCS2) XCV0783 PF00512 His Kinase A (phospho-acceptor) domain XCV0783 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV0783 PF00672 HAMP domain XCV0784 PF00486 Transcriptional regulatory protein, C terminal XCV0784 PF00072 Response regulator receiver domain XCV0787 PF02583 Metal-sensitive transcriptional repressor XCV0788 PF08240 Alcohol dehydrogenase GroES-like domain XCV0788 PF00107 Zinc-binding dehydrogenase XCV0789 PF04828 Glutathione-dependent formaldehyde-activating enzyme XCV0790 PF00756 Putative esterase XCV0792 PF12848 ABC transporter XCV0792 PF00005 ABC transporter XCV0794 PF00464 Serine hydroxymethyltransferase XCV0796 PF03477 ATP cone domain XCV0798 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region XCV0798 PF01872 RibD C-terminal domain XCV0800 PF00677 Lumazine binding domain XCV0801 PF00925 GTP cyclohydrolase II XCV0801 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase XCV0802 PF00885 6,7-dimethyl-8-ribityllumazine synthase XCV0803 PF01029 NusB family XCV0804 PF02769 AIR synthase related protein, C-terminal domain XCV0804 PF00586 AIR synthase related protein, N-terminal domain XCV0808 PF03814 Potassium-transporting ATPase A subunit XCV0810 PF02669 K+-transporting ATPase, c chain XCV0811 PF13493 Domain of unknown function (DUF4118) XCV0811 PF02702 Osmosensitive K+ channel His kinase sensor domain XCV0811 PF00512 His Kinase A (phospho-acceptor) domain XCV0811 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV0811 PF13492 GAF domain XCV0812 PF00486 Transcriptional regulatory protein, C terminal XCV0812 PF00072 Response regulator receiver domain XCV0814 PF01565 FAD binding domain XCV0814 PF02913 FAD linked oxidases, C-terminal domain XCV0815 PF04307 LexA-binding, inner membrane-associated putative hydrolase XCV0816 PF02021 Uncharacterised protein family UPF0102 XCV0818 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XCV0822 PF02381 MraZ protein, putative antitoxin-like XCV0823 PF01795 MraW methylase family XCV0824 PF04999 Cell division protein FtsL XCV0825 PF00905 Penicillin binding protein transpeptidase domain XCV0825 PF03717 Penicillin-binding Protein dimerisation domain XCV0826 PF08245 Mur ligase middle domain XCV0826 PF02875 Mur ligase family, glutamate ligase domain XCV0826 PF01225 Mur ligase family, catalytic domain XCV0827 PF08245 Mur ligase middle domain XCV0827 PF01225 Mur ligase family, catalytic domain XCV0827 PF02875 Mur ligase family, glutamate ligase domain XCV0828 PF00953 Glycosyl transferase family 4 XCV0829 PF01098 Cell cycle protein XCV0830 PF04101 Glycosyltransferase family 28 C-terminal domain XCV0830 PF03033 Glycosyltransferase family 28 N-terminal domain XCV0831 PF08245 Mur ligase middle domain XCV0831 PF02875 Mur ligase family, glutamate ligase domain XCV0831 PF01225 Mur ligase family, catalytic domain XCV0832 PF01820 D-ala D-ala ligase N-terminus XCV0832 PF07478 D-ala D-ala ligase C-terminus XCV0833 PF03799 Cell division protein FtsQ XCV0833 PF08478 POTRA domain, FtsQ-type XCV0834 PF02491 SHS2 domain inserted in FTSA XCV0835 PF00091 Tubulin/FtsZ family, GTPase domain XCV0835 PF12327 FtsZ family, C-terminal domain XCV0836 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase XCV0838 PF08525 Opacity-associated protein A N-terminal motif XCV0838 PF01551 Peptidase family M23 XCV0838 PF01476 LysM domain XCV0839 PF07516 SecA Wing and Scaffold domain XCV0839 PF01043 SecA preprotein cross-linking domain XCV0839 PF07517 SecA DEAD-like domain XCV0839 PF02810 SEC-C motif XCV0840 PF00293 NUDIX domain XCV0842 PF02219 Methylenetetrahydrofolate reductase XCV0844 PF08240 Alcohol dehydrogenase GroES-like domain XCV0844 PF00107 Zinc-binding dehydrogenase XCV0844 PF14765 Polyketide synthase dehydratase XCV0844 PF00550 Phosphopantetheine attachment site XCV0844 PF00698 Acyl transferase domain XCV0844 PF02801 Beta-ketoacyl synthase, C-terminal domain XCV0844 PF16197 Ketoacyl-synthetase C-terminal extension XCV0844 PF00109 Beta-ketoacyl synthase, N-terminal domain XCV0844 PF08659 KR domain XCV0845 PF00082 Subtilase family XCV0845 PF09286 Pro-kumamolisin, activation domain XCV0847 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XCV0849 PF00128 Alpha amylase, catalytic domain XCV0850 PF00128 Alpha amylase, catalytic domain XCV0855 PF13649 Methyltransferase domain XCV0856 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XCV0856 PF05221 S-adenosyl-L-homocysteine hydrolase XCV0858 PF00311 Phosphoenolpyruvate carboxylase XCV0862 PF00691 OmpA family XCV0862 PF01389 OmpA-like transmembrane domain XCV0864 PF00328 Histidine phosphatase superfamily (branch 2) XCV0865 PF00438 S-adenosylmethionine synthetase, N-terminal domain XCV0865 PF02772 S-adenosylmethionine synthetase, central domain XCV0865 PF02773 S-adenosylmethionine synthetase, C-terminal domain XCV0867 PF13649 Methyltransferase domain XCV0868 PF01207 Dihydrouridine synthase (Dus) XCV0870 PF00294 pfkB family carbohydrate kinase XCV0871 PF01773 Na+ dependent nucleoside transporter N-terminus XCV0871 PF07662 Na+ dependent nucleoside transporter C-terminus XCV0871 PF07670 Nucleoside recognition XCV0873 PF00248 Aldo/keto reductase family XCV0875 PF00593 TonB dependent receptor XCV0875 PF07715 TonB-dependent Receptor Plug Domain XCV0880 PF00528 Binding-protein-dependent transport system inner membrane component XCV0881 PF00005 ABC transporter XCV0883 PF02668 Taurine catabolism dioxygenase TauD, TfdA family XCV0885 PF00005 ABC transporter XCV0886 PF13472 GDSL-like Lipase/Acylhydrolase family XCV0887 PF00486 Transcriptional regulatory protein, C terminal XCV0887 PF00072 Response regulator receiver domain XCV0888 PF08521 Two-component sensor kinase N-terminal XCV0888 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV0888 PF00512 His Kinase A (phospho-acceptor) domain XCV0890 PF01219 Prokaryotic diacylglycerol kinase XCV0894 PF01790 Prolipoprotein diacylglyceryl transferase XCV0895 PF00303 Thymidylate synthase XCV0897 PF00186 Dihydrofolate reductase XCV0898 PF00149 Calcineurin-like phosphoesterase XCV0899 PF04379 ApaG domain XCV0900 PF00398 Ribosomal RNA adenine dimethylase XCV0901 PF04166 Pyridoxal phosphate biosynthetic protein PdxA XCV0902 PF09312 SurA N-terminal domain XCV0902 PF00639 PPIC-type PPIASE domain XCV0903 PF04453 LPS transport system D XCV0903 PF03968 OstA-like protein XCV0904 PF00850 Histone deacetylase domain XCV0905 PF01923 Cobalamin adenosyltransferase XCV0907 PF01494 FAD binding domain XCV0908 PF01494 FAD binding domain XCV0912 PF07729 FCD domain XCV0912 PF00392 Bacterial regulatory proteins, gntR family XCV0913 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XCV0914 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XCV0914 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit XCV0915 PF03466 LysR substrate binding domain XCV0915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV0916 PF13193 AMP-binding enzyme C-terminal domain XCV0916 PF00501 AMP-binding enzyme XCV0917 PF00171 Aldehyde dehydrogenase family XCV0918 PF00378 Enoyl-CoA hydratase/isomerase XCV0922 PF08450 SMP-30/Gluconolactonase/LRE-like region XCV0923 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XCV0923 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XCV0924 PF01728 FtsJ-like methyltransferase XCV0924 PF18125 RlmM ferredoxin-like domain XCV0928 PF00892 EamA-like transporter family XCV0930 PF00749 tRNA synthetases class I (E and Q), catalytic domain XCV0930 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain XCV0933 PF00990 Diguanylate cyclase, GGDEF domain XCV0933 PF00072 Response regulator receiver domain XCV0934 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV0934 PF00072 Response regulator receiver domain XCV0934 PF01627 Hpt domain XCV0934 PF00512 His Kinase A (phospho-acceptor) domain XCV0934 PF17149 Periplasmic sensor domain found in signal transduction proteins XCV0934 PF00672 HAMP domain XCV0935 PF00072 Response regulator receiver domain XCV0935 PF00196 Bacterial regulatory proteins, luxR family XCV0937 PF01625 Peptide methionine sulfoxide reductase XCV0939 PF00923 Transaldolase/Fructose-6-phosphate aldolase XCV0940 PF01272 Transcription elongation factor, GreA/GreB, C-term XCV0940 PF14760 Rnk N-terminus XCV0941 PF03466 LysR substrate binding domain XCV0941 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV0942 PF13192 Thioredoxin domain XCV0942 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCV0943 PF10417 C-terminal domain of 1-Cys peroxiredoxin XCV0943 PF00578 AhpC/TSA family XCV0944 PF05175 Methyltransferase small domain XCV0944 PF17827 PrmC N-terminal domain XCV0945 PF00561 alpha/beta hydrolase fold XCV0947 PF00293 NUDIX domain XCV0948 PF01612 3'-5' exonuclease XCV0948 PF01367 5'-3' exonuclease, C-terminal SAM fold XCV0948 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XCV0948 PF00476 DNA polymerase family A XCV0951 PF01262 Alanine dehydrogenase/PNT, C-terminal domain XCV0951 PF05222 Alanine dehydrogenase/PNT, N-terminal domain XCV0951 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch XCV0955 PF02233 NAD(P) transhydrogenase beta subunit XCV0958 PF01063 Amino-transferase class IV XCV0959 PF00082 Subtilase family XCV0959 PF04151 Bacterial pre-peptidase C-terminal domain XCV0960 PF00082 Subtilase family XCV0960 PF04151 Bacterial pre-peptidase C-terminal domain XCV0961 PF04151 Bacterial pre-peptidase C-terminal domain XCV0961 PF00082 Subtilase family XCV0962 PF04073 Aminoacyl-tRNA editing domain XCV0965 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain XCV0965 PF17189 Glycosyl hydrolase family 30 beta sandwich domain XCV0967 PF03358 NADPH-dependent FMN reductase XCV0968 PF03631 Virulence factor BrkB XCV0969 PF08534 Redoxin XCV0970 PF00708 Acylphosphatase XCV0972 PF03976 Polyphosphate kinase 2 (PPK2) XCV0973 PF00994 Probable molybdopterin binding domain XCV0975 PF03462 PCRF domain XCV0975 PF00472 RF-1 domain XCV0976 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain XCV0976 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain XCV0976 PF01488 Shikimate / quinate 5-dehydrogenase XCV0978 PF03550 Outer membrane lipoprotein LolB XCV0979 PF00288 GHMP kinases N terminal domain XCV0979 PF08544 GHMP kinases C terminal XCV0980 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase XCV0980 PF14572 Phosphoribosyl synthetase-associated domain XCV0981 PF01386 Ribosomal L25p family XCV0981 PF14693 Ribosomal protein TL5, C-terminal domain XCV0982 PF01195 Peptidyl-tRNA hydrolase XCV0983 PF06071 Protein of unknown function (DUF933) XCV0983 PF01926 50S ribosome-binding GTPase XCV0984 PF03143 Elongation factor Tu C-terminal domain XCV0984 PF03144 Elongation factor Tu domain 2 XCV0984 PF00009 Elongation factor Tu GTP binding domain XCV0985 PF00584 SecE/Sec61-gamma subunits of protein translocation complex XCV0986 PF00467 KOW motif XCV0986 PF02357 Transcription termination factor nusG XCV0987 PF00298 Ribosomal protein L11, RNA binding domain XCV0987 PF03946 Ribosomal protein L11, N-terminal domain XCV0988 PF00687 Ribosomal protein L1p/L10e family XCV0989 PF00466 Ribosomal protein L10 XCV0990 PF16320 Ribosomal protein L7/L12 dimerisation domain XCV0990 PF00542 Ribosomal protein L7/L12 C-terminal domain XCV0991 PF00562 RNA polymerase Rpb2, domain 6 XCV0991 PF10385 RNA polymerase beta subunit external 1 domain XCV0991 PF04565 RNA polymerase Rpb2, domain 3 XCV0991 PF04560 RNA polymerase Rpb2, domain 7 XCV0991 PF04561 RNA polymerase Rpb2, domain 2 XCV0991 PF04563 RNA polymerase beta subunit XCV0992 PF04998 RNA polymerase Rpb1, domain 5 XCV0992 PF05000 RNA polymerase Rpb1, domain 4 XCV0992 PF04983 RNA polymerase Rpb1, domain 3 XCV0992 PF00623 RNA polymerase Rpb1, domain 2 XCV0992 PF04997 RNA polymerase Rpb1, domain 1 XCV0993 PF00164 Ribosomal protein S12/S23 XCV0994 PF00177 Ribosomal protein S7p/S5e XCV0995 PF03144 Elongation factor Tu domain 2 XCV0995 PF14492 Elongation Factor G, domain II XCV0995 PF00679 Elongation factor G C-terminus XCV0995 PF03764 Elongation factor G, domain IV XCV0995 PF00009 Elongation factor Tu GTP binding domain XCV0996 PF03143 Elongation factor Tu C-terminal domain XCV0996 PF03144 Elongation factor Tu domain 2 XCV0996 PF00009 Elongation factor Tu GTP binding domain XCV0998 PF00338 Ribosomal protein S10p/S20e XCV0999 PF00297 Ribosomal protein L3 XCV1000 PF00573 Ribosomal protein L4/L1 family XCV1001 PF00276 Ribosomal protein L23 XCV1002 PF00181 Ribosomal Proteins L2, RNA binding domain XCV1002 PF03947 Ribosomal Proteins L2, C-terminal domain XCV1003 PF00203 Ribosomal protein S19 XCV1004 PF00237 Ribosomal protein L22p/L17e XCV1005 PF00189 Ribosomal protein S3, C-terminal domain XCV1005 PF07650 KH domain XCV1006 PF00252 Ribosomal protein L16p/L10e XCV1007 PF00831 Ribosomal L29 protein XCV1008 PF00366 Ribosomal protein S17 XCV1009 PF00238 Ribosomal protein L14p/L23e XCV1010 PF00467 KOW motif XCV1010 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 XCV1011 PF00281 Ribosomal protein L5 XCV1011 PF00673 ribosomal L5P family C-terminus XCV1012 PF00253 Ribosomal protein S14p/S29e XCV1013 PF00410 Ribosomal protein S8 XCV1014 PF00347 Ribosomal protein L6 XCV1015 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast XCV1016 PF03719 Ribosomal protein S5, C-terminal domain XCV1016 PF00333 Ribosomal protein S5, N-terminal domain XCV1017 PF00327 Ribosomal protein L30p/L7e XCV1018 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A XCV1019 PF00344 SecY translocase XCV1020 PF00416 Ribosomal protein S13/S18 XCV1021 PF00411 Ribosomal protein S11 XCV1022 PF01479 S4 domain XCV1022 PF00163 Ribosomal protein S4/S9 N-terminal domain XCV1023 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain XCV1023 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain XCV1023 PF01000 RNA polymerase Rpb3/RpoA insert domain XCV1024 PF01196 Ribosomal protein L17 XCV1026 PF02600 Disulfide bond formation protein DsbB XCV1028 PF01474 Class-II DAHP synthetase family XCV1030 PF01425 Amidase XCV1033 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XCV1034 PF00056 lactate/malate dehydrogenase, NAD binding domain XCV1034 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain XCV1035 PF02798 Glutathione S-transferase, N-terminal domain XCV1035 PF00043 Glutathione S-transferase, C-terminal domain XCV1039 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCV1039 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XCV1041 PF08240 Alcohol dehydrogenase GroES-like domain XCV1041 PF00107 Zinc-binding dehydrogenase XCV1042 PF00223 Photosystem I psaA/psaB protein XCV1042 PF00691 OmpA family XCV1044 PF00849 RNA pseudouridylate synthase XCV1046 PF00155 Aminotransferase class I and II XCV1048 PF00528 Binding-protein-dependent transport system inner membrane component XCV1049 PF00528 Binding-protein-dependent transport system inner membrane component XCV1050 PF00005 ABC transporter XCV1050 PF17850 CysA C-terminal regulatory domain XCV1050 PF12857 TOBE-like domain XCV1052 PF00107 Zinc-binding dehydrogenase XCV1052 PF08240 Alcohol dehydrogenase GroES-like domain XCV1054 PF04185 Phosphoesterase family XCV1054 PF05506 Domain of unknown function (DUF756) XCV1056 PF10459 Peptidase S46 XCV1057 PF00300 Histidine phosphatase superfamily (branch 1) XCV1058 PF02875 Mur ligase family, glutamate ligase domain XCV1058 PF08245 Mur ligase middle domain XCV1061 PF00156 Phosphoribosyl transferase domain XCV1062 PF04305 Protein of unknown function (DUF455) XCV1066 PF00149 Calcineurin-like phosphoesterase XCV1067 PF01569 PAP2 superfamily XCV1068 PF13439 Glycosyltransferase Family 4 XCV1068 PF00534 Glycosyl transferases group 1 XCV1069 PF02541 Ppx/GppA phosphatase family XCV1070 PF17941 Polyphosphate kinase C-terminal domain 1 XCV1070 PF13089 Polyphosphate kinase N-terminal domain XCV1070 PF13090 Polyphosphate kinase C-terminal domain 2 XCV1070 PF02503 Polyphosphate kinase middle domain XCV1071 PF00989 PAS fold XCV1071 PF11808 Phosphate regulon sensor protein PhoR XCV1071 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV1071 PF00512 His Kinase A (phospho-acceptor) domain XCV1072 PF00486 Transcriptional regulatory protein, C terminal XCV1072 PF00072 Response regulator receiver domain XCV1073 PF13181 Tetratricopeptide repeat XCV1073 PF01435 Peptidase family M48 XCV1074 PF00462 Glutaredoxin XCV1076 PF18324 Hypothetical protein TT1725 XCV1076 PF00180 Isocitrate/isopropylmalate dehydrogenase XCV1079 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV1079 PF00512 His Kinase A (phospho-acceptor) domain XCV1079 PF00989 PAS fold XCV1080 PF05698 Bacterial trigger factor protein (TF) C-terminus XCV1080 PF05697 Bacterial trigger factor protein (TF) XCV1081 PF00574 Clp protease XCV1082 PF07724 AAA domain (Cdc48 subfamily) XCV1082 PF10431 C-terminal, D2-small domain, of ClpB protein XCV1082 PF06689 ClpX C4-type zinc finger XCV1083 PF02190 ATP-dependent protease La (LON) substrate-binding domain XCV1083 PF00004 ATPase family associated with various cellular activities (AAA) XCV1083 PF05362 Lon protease (S16) C-terminal proteolytic domain XCV1084 PF00216 Bacterial DNA-binding protein XCV1086 PF01476 LysM domain XCV1086 PF05257 CHAP domain XCV1087 PF16123 Hydroxyacylglutathione hydrolase C-terminus XCV1087 PF00753 Metallo-beta-lactamase superfamily XCV1089 PF00075 RNase H XCV1090 PF00929 Exonuclease XCV1093 PF03389 MobA/MobL family XCV1093 PF16793 RepB DNA-primase from phage plasmid XCV1097 PF01527 Transposase XCV1098 PF13276 HTH-like domain XCV1098 PF13683 Integrase core domain XCV1102 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XCV1104 PF00753 Metallo-beta-lactamase superfamily XCV1104 PF12706 Beta-lactamase superfamily domain XCV1105 PF04055 Radical SAM superfamily XCV1105 PF06463 Molybdenum Cofactor Synthesis C XCV1107 PF01967 MoaC family XCV1108 PF02597 ThiS family XCV1109 PF02391 MoaE protein XCV1110 PF01555 DNA methylase XCV1113 PF01527 Transposase XCV1114 PF13683 Integrase core domain XCV1114 PF13276 HTH-like domain XCV1115 PF04002 RadC-like JAB domain XCV1119 PF13276 HTH-like domain XCV1119 PF13333 Integrase core domain XCV1119 PF00665 Integrase core domain XCV1127 PF12170 DNA polymerase III tau subunit V interacting with alpha XCV1127 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding XCV1127 PF12169 DNA polymerase III subunits gamma and tau domain III XCV1128 PF02575 YbaB/EbfC DNA-binding family XCV1129 PF02132 RecR protein XCV1129 PF13662 Toprim domain XCV1130 PF01230 HIT domain XCV1132 PF01841 Transglutaminase-like superfamily XCV1132 PF13559 Domain of unknown function (DUF4129) XCV1132 PF11992 Domain of unknown function (DUF3488) XCV1134 PF07726 ATPase family associated with various cellular activities (AAA) XCV1134 PF17863 AAA lid domain XCV1137 PF02545 Maf-like protein XCV1138 PF01527 Transposase XCV1139 PF13683 Integrase core domain XCV1139 PF13276 HTH-like domain XCV1140 PF02545 Maf-like protein XCV1142 PF01783 Ribosomal L32p protein family XCV1143 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XCV1143 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XCV1145 PF00698 Acyl transferase domain XCV1147 PF00550 Phosphopantetheine attachment site XCV1148 PF02801 Beta-ketoacyl synthase, C-terminal domain XCV1148 PF00109 Beta-ketoacyl synthase, N-terminal domain XCV1149 PF00425 chorismate binding enzyme XCV1149 PF04715 Anthranilate synthase component I, N terminal region XCV1150 PF02618 YceG-like family XCV1151 PF09115 DNA polymerase III, delta subunit, C terminal XCV1155 PF02954 Bacterial regulatory protein, Fis family XCV1155 PF06506 Propionate catabolism activator XCV1155 PF00158 Sigma-54 interaction domain XCV1157 PF00285 Citrate synthase, C-terminal domain XCV1158 PF00694 Aconitase C-terminal domain XCV1158 PF00330 Aconitase family (aconitate hydratase) XCV1160 PF04303 PrpF protein XCV1161 PF07715 TonB-dependent Receptor Plug Domain XCV1161 PF00593 TonB dependent receptor XCV1164 PF17962 Bacterial macroglobulin domain 6 XCV1164 PF01835 MG2 domain XCV1164 PF11974 Bacterial alpha-2-macroglobulin MG3 domain XCV1164 PF00207 Alpha-2-macroglobulin family XCV1164 PF07703 Alpha-2-macroglobulin bait region domain XCV1164 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain XCV1164 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain XCV1164 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain XCV1168 PF06832 Penicillin-Binding Protein C-terminus Family XCV1168 PF00905 Penicillin binding protein transpeptidase domain XCV1168 PF00912 Transglycosylase XCV1170 PF08534 Redoxin XCV1173 PF00226 DnaJ domain XCV1173 PF01556 DnaJ C terminal domain XCV1174 PF00072 Response regulator receiver domain XCV1175 PF12221 Bacterial membrane protein N terminal XCV1175 PF01145 SPFH domain / Band 7 family XCV1176 PF01145 SPFH domain / Band 7 family XCV1178 PF00709 Adenylosuccinate synthetase XCV1179 PF11838 ERAP1-like C-terminal domain XCV1179 PF01433 Peptidase family M1 domain XCV1182 PF00440 Bacterial regulatory proteins, tetR family XCV1191 PF12161 HsdM N-terminal domain XCV1191 PF02384 N-6 DNA Methylase XCV1193 PF01420 Type I restriction modification DNA specificity domain XCV1194 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) XCV1194 PF18766 SWI2/SNF2 ATPase XCV1194 PF12008 Type I restriction and modification enzyme - subunit R C terminal XCV1200 PF13456 Reverse transcriptase-like XCV1200 PF00300 Histidine phosphatase superfamily (branch 1) XCV1201 PF01256 Carbohydrate kinase XCV1203 PF00723 Glycosyl hydrolases family 15 XCV1205 PF17678 Glycosyl hydrolase family 92 N-terminal domain XCV1205 PF07971 Glycosyl hydrolase family 92 XCV1206 PF00106 short chain dehydrogenase XCV1208 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCV1213 PF17755 UvrA DNA-binding domain XCV1214 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XCV1214 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XCV1215 PF03450 CO dehydrogenase flavoprotein C-terminal domain XCV1215 PF00941 FAD binding domain in molybdopterin dehydrogenase XCV1216 PF01799 [2Fe-2S] binding domain XCV1216 PF00111 2Fe-2S iron-sulfur cluster binding domain XCV1223 PF00717 Peptidase S24-like XCV1223 PF01726 LexA DNA binding domain XCV1226 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XCV1226 PF02811 PHP domain XCV1226 PF07733 Bacterial DNA polymerase III alpha NTPase domain XCV1226 PF14579 Helix-hairpin-helix motif XCV1227 PF00326 Prolyl oligopeptidase family XCV1230 PF03169 OPT oligopeptide transporter protein XCV1232 PF07676 WD40-like Beta Propeller Repeat XCV1232 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XCV1232 PF00326 Prolyl oligopeptidase family XCV1235 PF12833 Helix-turn-helix domain XCV1235 PF02311 AraC-like ligand binding domain XCV1240 PF18011 C-terminal domain found in long catalases XCV1240 PF06628 Catalase-related immune-responsive XCV1240 PF00199 Catalase XCV1241 PF00248 Aldo/keto reductase family XCV1242 PF00135 Carboxylesterase family XCV1243 PF02347 Glycine cleavage system P-protein XCV1246 PF00005 ABC transporter XCV1246 PF03412 Peptidase C39 family XCV1246 PF00664 ABC transporter transmembrane region XCV1247 PF07690 Major Facilitator Superfamily XCV1250 PF08019 Phosphoethanolamine transferase EptA/EptB XCV1250 PF00884 Sulfatase XCV1253 PF00072 Response regulator receiver domain XCV1253 PF00486 Transcriptional regulatory protein, C terminal XCV1254 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV1254 PF00512 His Kinase A (phospho-acceptor) domain XCV1254 PF08521 Two-component sensor kinase N-terminal XCV1256 PF03776 Septum formation topological specificity factor MinE XCV1257 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XCV1258 PF03775 Septum formation inhibitor MinC, C-terminal domain XCV1258 PF05209 Septum formation inhibitor MinC, N-terminal domain XCV1260 PF07730 Histidine kinase XCV1261 PF00196 Bacterial regulatory proteins, luxR family XCV1261 PF00072 Response regulator receiver domain XCV1264 PF00730 HhH-GPD superfamily base excision DNA repair protein XCV1269 PF02222 ATP-grasp domain XCV1273 PF04376 Arginine-tRNA-protein transferase, N terminus XCV1273 PF04377 Arginine-tRNA-protein transferase, C terminus XCV1276 PF08281 Sigma-70, region 4 XCV1276 PF04542 Sigma-70 region 2 XCV1280 PF00378 Enoyl-CoA hydratase/isomerase XCV1283 PF00005 ABC transporter XCV1283 PF17755 UvrA DNA-binding domain XCV1283 PF17760 UvrA interaction domain XCV1284 PF00829 Ribosomal prokaryotic L21 protein XCV1285 PF01016 Ribosomal L27 protein XCV1286 PF01926 50S ribosome-binding GTPase XCV1286 PF01018 GTP1/OBG XCV1287 PF01649 Ribosomal protein S20 XCV1288 PF03023 Lipid II flippase MurJ XCV1289 PF01687 Riboflavin kinase XCV1289 PF06574 FAD synthetase XCV1290 PF06827 Zinc finger found in FPG and IleRS XCV1290 PF00133 tRNA synthetases class I (I, L, M and V) XCV1290 PF08264 Anticodon-binding domain of tRNA XCV1291 PF01252 Signal peptidase (SPase) II XCV1292 PF02401 LytB protein XCV1294 PF01609 Transposase DDE domain XCV1294 PF05598 Transposase domain (DUF772) XCV1297 PF01527 Transposase XCV1300 PF13276 HTH-like domain XCV1300 PF13683 Integrase core domain XCV1301 PF01527 Transposase XCV1306 PF00589 Phage integrase family XCV1307 PF06481 COX Aromatic Rich Motif XCV1307 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XCV1308 PF00115 Cytochrome C and Quinol oxidase polypeptide I XCV1309 PF00510 Cytochrome c oxidase subunit III XCV1310 PF03626 Prokaryotic Cytochrome C oxidase subunit IV XCV1312 PF18073 Rubredoxin metal binding domain XCV1313 PF05656 Protein of unknown function (DUF805) XCV1315 PF12833 Helix-turn-helix domain XCV1316 PF00183 Hsp90 protein XCV1316 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV1319 PF01740 STAS domain XCV1319 PF08678 Rsbr N terminal XCV1320 PF01740 STAS domain XCV1321 PF13581 Histidine kinase-like ATPase domain XCV1323 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV1323 PF00672 HAMP domain XCV1323 PF01627 Hpt domain XCV1323 PF00512 His Kinase A (phospho-acceptor) domain XCV1323 PF00072 Response regulator receiver domain XCV1323 PF17149 Periplasmic sensor domain found in signal transduction proteins XCV1324 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV1324 PF00072 Response regulator receiver domain XCV1324 PF13188 PAS domain XCV1324 PF00512 His Kinase A (phospho-acceptor) domain XCV1324 PF08448 PAS fold XCV1325 PF04616 Glycosyl hydrolases family 43 XCV1325 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XCV1326 PF07715 TonB-dependent Receptor Plug Domain XCV1326 PF00593 TonB dependent receptor XCV1327 PF00085 Thioredoxin XCV1328 PF07237 Protein of unknown function (DUF1428) XCV1329 PF13492 GAF domain XCV1329 PF02702 Osmosensitive K+ channel His kinase sensor domain XCV1329 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV1329 PF13493 Domain of unknown function (DUF4118) XCV1329 PF00512 His Kinase A (phospho-acceptor) domain XCV1330 PF01339 CheB methylesterase XCV1331 PF03705 CheR methyltransferase, all-alpha domain XCV1331 PF01739 CheR methyltransferase, SAM binding domain XCV1332 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XCV1332 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV1332 PF00512 His Kinase A (phospho-acceptor) domain XCV1332 PF01627 Hpt domain XCV1332 PF00672 HAMP domain XCV1332 PF00072 Response regulator receiver domain XCV1333 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV1333 PF00072 Response regulator receiver domain XCV1333 PF13426 PAS domain XCV1334 PF00072 Response regulator receiver domain XCV1335 PF06964 Alpha-L-arabinofuranosidase C-terminal domain XCV1336 PF01263 Aldose 1-epimerase XCV1337 PF01578 Cytochrome C assembly protein XCV1338 PF02978 Signal peptide binding domain XCV1338 PF02881 SRP54-type protein, helical bundle domain XCV1338 PF00448 SRP54-type protein, GTPase domain XCV1339 PF03060 Nitronate monooxygenase XCV1341 PF01063 Amino-transferase class IV XCV1342 PF00886 Ribosomal protein S16 XCV1343 PF05239 PRC-barrel domain XCV1343 PF01782 RimM N-terminal domain XCV1344 PF01746 tRNA (Guanine-1)-methyltransferase XCV1345 PF01245 Ribosomal protein L19 XCV1346 PF01554 MatE XCV1349 PF01479 S4 domain XCV1350 PF00141 Peroxidase XCV1352 PF05192 MutS domain III XCV1352 PF05188 MutS domain II XCV1352 PF01624 MutS domain I XCV1352 PF00488 MutS domain V XCV1352 PF05190 MutS family domain IV XCV1355 PF13276 HTH-like domain XCV1355 PF13683 Integrase core domain XCV1356 PF01527 Transposase XCV1359 PF02837 Glycosyl hydrolases family 2, sugar binding domain XCV1359 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XCV1359 PF00703 Glycosyl hydrolases family 2 XCV1359 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XCV1359 PF16355 Domain of unknown function (DUF4982) XCV1360 PF07745 Glycosyl hydrolase family 53 XCV1362 PF01381 Helix-turn-helix XCV1362 PF06114 IrrE N-terminal-like domain XCV1362 PF09856 Predicted transcriptional regulator (DUF2083) XCV1363 PF00171 Aldehyde dehydrogenase family XCV1364 PF02770 Acyl-CoA dehydrogenase, middle domain XCV1364 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCV1364 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCV1365 PF00378 Enoyl-CoA hydratase/isomerase XCV1366 PF00378 Enoyl-CoA hydratase/isomerase XCV1366 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XCV1366 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XCV1367 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XCV1367 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XCV1368 PF01545 Cation efflux family XCV1369 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XCV1369 PF00378 Enoyl-CoA hydratase/isomerase XCV1369 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XCV1370 PF04542 Sigma-70 region 2 XCV1370 PF08281 Sigma-70, region 4 XCV1372 PF13180 PDZ domain XCV1373 PF00009 Elongation factor Tu GTP binding domain XCV1373 PF06421 GTP-binding protein LepA C-terminus XCV1373 PF00679 Elongation factor G C-terminus XCV1373 PF03144 Elongation factor Tu domain 2 XCV1374 PF10502 Signal peptidase, peptidase S26 XCV1376 PF14622 Ribonuclease-III-like XCV1376 PF00035 Double-stranded RNA binding motif XCV1377 PF07650 KH domain XCV1377 PF01926 50S ribosome-binding GTPase XCV1379 PF11967 Recombination protein O N terminal XCV1379 PF02565 Recombination protein O C terminal XCV1381 PF05958 tRNA (Uracil-5-)-methyltransferase XCV1383 PF01323 DSBA-like thioredoxin domain XCV1384 PF01593 Flavin containing amine oxidoreductase XCV1385 PF04244 Deoxyribodipyrimidine photo-lyase-related protein XCV1386 PF00933 Glycosyl hydrolase family 3 N terminal domain XCV1388 PF01048 Phosphorylase superfamily XCV1389 PF00313 'Cold-shock' DNA-binding domain XCV1390 PF01494 FAD binding domain XCV1393 PF08494 DEAD/H associated XCV1393 PF00271 Helicase conserved C-terminal domain XCV1393 PF00270 DEAD/DEAH box helicase XCV1394 PF04679 ATP dependent DNA ligase C terminal region XCV1394 PF01068 ATP dependent DNA ligase domain XCV1394 PF04675 DNA ligase N terminus XCV1395 PF04675 DNA ligase N terminus XCV1395 PF01068 ATP dependent DNA ligase domain XCV1395 PF04679 ATP dependent DNA ligase C terminal region XCV1398 PF00990 Diguanylate cyclase, GGDEF domain XCV1398 PF00072 Response regulator receiver domain XCV1401 PF00108 Thiolase, N-terminal domain XCV1401 PF02803 Thiolase, C-terminal domain XCV1402 PF03797 Autotransporter beta-domain XCV1402 PF12951 Passenger-associated-transport-repeat XCV1402 PF00082 Subtilase family XCV1403 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain XCV1403 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XCV1405 PF01863 Protein of unknown function DUF45 XCV1406 PF07043 Protein of unknown function (DUF1328) XCV1408 PF01258 Prokaryotic dksA/traR C4-type zinc finger XCV1412 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCV1413 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCV1415 PF03831 PhnA domain XCV1415 PF08274 PhnA Zinc-Ribbon XCV1417 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XCV1418 PF07690 Major Facilitator Superfamily XCV1425 PF03706 Lysylphosphatidylglycerol synthase TM region XCV1425 PF09924 Uncharacterised conserved protein (DUF2156) XCV1427 PF01042 Endoribonuclease L-PSP XCV1436 PF04542 Sigma-70 region 2 XCV1436 PF04545 Sigma-70, region 4 XCV1439 PF04060 Putative Fe-S cluster XCV1441 PF09334 tRNA synthetases class I (M) XCV1441 PF01588 Putative tRNA binding domain XCV1445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XCV1448 PF00324 Amino acid permease XCV1449 PF02574 Homocysteine S-methyltransferase XCV1451 PF02592 Putative vitamin uptake transporter XCV1455 PF03551 Transcriptional regulator PadR-like family XCV1462 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit XCV1463 PF01336 OB-fold nucleic acid binding domain XCV1463 PF02811 PHP domain XCV1463 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XCV1463 PF14579 Helix-hairpin-helix motif XCV1463 PF07733 Bacterial DNA polymerase III alpha NTPase domain XCV1464 PF01351 Ribonuclease HII XCV1465 PF02684 Lipid-A-disaccharide synthetase XCV1466 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 XCV1466 PF00132 Bacterial transferase hexapeptide (six repeats) XCV1467 PF07977 FabA-like domain XCV1468 PF00132 Bacterial transferase hexapeptide (six repeats) XCV1468 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD XCV1470 PF07244 Surface antigen variable number repeat XCV1470 PF01103 Surface antigen XCV1471 PF17820 PDZ domain XCV1471 PF02163 Peptidase family M50 XCV1472 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase XCV1472 PF13288 DXP reductoisomerase C-terminal domain XCV1472 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain XCV1474 PF01255 Putative undecaprenyl diphosphate synthase XCV1475 PF01765 Ribosome recycling factor XCV1476 PF00696 Amino acid kinase family XCV1477 PF00990 Diguanylate cyclase, GGDEF domain XCV1477 PF00072 Response regulator receiver domain XCV1478 PF00889 Elongation factor TS XCV1479 PF00318 Ribosomal protein S2 XCV1485 PF00557 Metallopeptidase family M24 XCV1486 PF08335 GlnD PII-uridylyltransferase XCV1486 PF01966 HD domain XCV1486 PF01909 Nucleotidyltransferase domain XCV1487 PF14602 Hexapeptide repeat of succinyl-transferase XCV1487 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal XCV1487 PF00132 Bacterial transferase hexapeptide (six repeats) XCV1488 PF03960 ArsC family XCV1489 PF07687 Peptidase dimerisation domain XCV1489 PF01546 Peptidase family M20/M25/M40 XCV1490 PF00733 Asparagine synthase XCV1490 PF13537 Glutamine amidotransferase domain XCV1493 PF00593 TonB dependent receptor XCV1493 PF07715 TonB-dependent Receptor Plug Domain XCV1494 PF01804 Penicillin amidase XCV1495 PF00210 Ferritin-like domain XCV1496 PF05724 Thiopurine S-methyltransferase (TPMT) XCV1497 PF00521 DNA gyrase/topoisomerase IV, subunit A XCV1497 PF03989 DNA gyrase C-terminal domain, beta-propeller XCV1500 PF02321 Outer membrane efflux protein XCV1501 PF00529 HlyD membrane-fusion protein of T1SS XCV1501 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCV1502 PF07690 Major Facilitator Superfamily XCV1505 PF07691 PA14 domain XCV1505 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCV1505 PF00933 Glycosyl hydrolase family 3 N terminal domain XCV1505 PF14310 Fibronectin type III-like domain XCV1507 PF00854 POT family XCV1512 PF12802 MarR family XCV1513 PF01432 Peptidase family M3 XCV1514 PF00255 Glutathione peroxidase XCV1515 PF00970 Oxidoreductase FAD-binding domain XCV1515 PF00175 Oxidoreductase NAD-binding domain XCV1516 PF00005 ABC transporter XCV1517 PF05681 Fumarate hydratase (Fumerase) XCV1517 PF05683 Fumarase C-terminus XCV1519 PF00484 Carbonic anhydrase XCV1520 PF02253 Phospholipase A1 XCV1522 PF00313 'Cold-shock' DNA-binding domain XCV1525 PF00899 ThiF family XCV1526 PF01026 TatD related DNase XCV1529 PF02770 Acyl-CoA dehydrogenase, middle domain XCV1529 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCV1529 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCV1532 PF02798 Glutathione S-transferase, N-terminal domain XCV1532 PF00043 Glutathione S-transferase, C-terminal domain XCV1533 PF00733 Asparagine synthase XCV1533 PF13537 Glutamine amidotransferase domain XCV1534 PF03358 NADPH-dependent FMN reductase XCV1535 PF03796 DnaB-like helicase C terminal domain XCV1535 PF00772 DnaB-like helicase N terminal domain XCV1536 PF03441 FAD binding domain of DNA photolyase XCV1536 PF00875 DNA photolyase XCV1537 PF05736 OprF membrane domain XCV1537 PF00691 OmpA family XCV1538 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV1538 PF03466 LysR substrate binding domain XCV1540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCV1540 PF00529 HlyD membrane-fusion protein of T1SS XCV1541 PF00873 AcrB/AcrD/AcrF family XCV1542 PF00106 short chain dehydrogenase XCV1543 PF02321 Outer membrane efflux protein XCV1544 PF08448 PAS fold XCV1544 PF00990 Diguanylate cyclase, GGDEF domain XCV1546 PF00990 Diguanylate cyclase, GGDEF domain XCV1550 PF01527 Transposase XCV1551 PF13276 HTH-like domain XCV1551 PF13683 Integrase core domain XCV1556 PF01668 SmpB protein XCV1557 PF03364 Polyketide cyclase / dehydrase and lipid transport XCV1558 PF03658 RnfH family Ubiquitin XCV1559 PF04355 SmpA / OmlA family XCV1560 PF01475 Ferric uptake regulator family XCV1561 PF02463 RecF/RecN/SMC N terminal domain XCV1562 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding XCV1562 PF01628 HrcA protein C terminal domain XCV1563 PF01025 GrpE XCV1564 PF00012 Hsp70 protein XCV1565 PF00684 DnaJ central domain XCV1565 PF01556 DnaJ C terminal domain XCV1565 PF00226 DnaJ domain XCV1566 PF08543 Phosphomethylpyrimidine kinase XCV1571 PF00664 ABC transporter transmembrane region XCV1571 PF00005 ABC transporter XCV1571 PF03412 Peptidase C39 family XCV1572 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV1572 PF03466 LysR substrate binding domain XCV1573 PF00005 ABC transporter XCV1573 PF00664 ABC transporter transmembrane region XCV1574 PF01205 Uncharacterized protein family UPF0029 XCV1575 PF03641 Possible lysine decarboxylase XCV1576 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCV1576 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XCV1577 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XCV1577 PF00364 Biotin-requiring enzyme XCV1577 PF02817 e3 binding domain XCV1578 PF16078 2-oxoglutarate dehydrogenase N-terminus XCV1578 PF00676 Dehydrogenase E1 component XCV1578 PF16870 2-oxoglutarate dehydrogenase C-terminal XCV1578 PF02779 Transketolase, pyrimidine binding domain XCV1580 PF08007 Cupin superfamily protein XCV1582 PF08328 Adenylosuccinate lyase C-terminal XCV1582 PF00206 Lyase XCV1584 PF01595 Cyclin M transmembrane N-terminal domain XCV1584 PF03471 Transporter associated domain XCV1584 PF00571 CBS domain XCV1585 PF00206 Lyase XCV1585 PF10415 Fumarase C C-terminus XCV1590 PF00005 ABC transporter XCV1591 PF00392 Bacterial regulatory proteins, gntR family XCV1592 PF00255 Glutathione peroxidase XCV1593 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCV1593 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XCV1594 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XCV1594 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XCV1594 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XCV1595 PF04102 SlyX XCV1598 PF00356 Bacterial regulatory proteins, lacI family XCV1599 PF07690 Major Facilitator Superfamily XCV1600 PF00294 pfkB family carbohydrate kinase XCV1602 PF02310 B12 binding domain XCV1602 PF02965 Vitamin B12 dependent methionine synthase, activation domain XCV1602 PF00809 Pterin binding enzyme XCV1602 PF02574 Homocysteine S-methyltransferase XCV1602 PF02607 B12 binding domain XCV1603 PF00809 Pterin binding enzyme XCV1603 PF02574 Homocysteine S-methyltransferase XCV1604 PF01209 ubiE/COQ5 methyltransferase family XCV1605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCV1605 PF02770 Acyl-CoA dehydrogenase, middle domain XCV1605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCV1607 PF00575 S1 RNA binding domain XCV1607 PF00773 RNB domain XCV1607 PF08206 Ribonuclease B OB domain XCV1607 PF17876 Cold shock domain XCV1607 PF08461 Ribonuclease R winged-helix domain XCV1609 PF08032 RNA 2'-O ribose methyltransferase substrate binding XCV1609 PF00588 SpoU rRNA Methylase family XCV1610 PF00990 Diguanylate cyclase, GGDEF domain XCV1610 PF07694 5TMR of 5TMR-LYT XCV1611 PF00929 Exonuclease XCV1613 PF01895 PhoU domain XCV1614 PF00005 ABC transporter XCV1615 PF00528 Binding-protein-dependent transport system inner membrane component XCV1616 PF00528 Binding-protein-dependent transport system inner membrane component XCV1617 PF12849 PBP superfamily domain XCV1618 PF12849 PBP superfamily domain XCV1621 PF00484 Carbonic anhydrase XCV1622 PF01740 STAS domain XCV1622 PF00916 Sulfate permease family XCV1623 PF00730 HhH-GPD superfamily base excision DNA repair protein XCV1623 PF00633 Helix-hairpin-helix motif XCV1623 PF10576 Iron-sulfur binding domain of endonuclease III XCV1625 PF00378 Enoyl-CoA hydratase/isomerase XCV1626 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XCV1626 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCV1627 PF00293 NUDIX domain XCV1628 PF00581 Rhodanese-like domain XCV1634 PF12848 ABC transporter XCV1634 PF00005 ABC transporter XCV1635 PF01170 Putative RNA methylase family UPF0020 XCV1635 PF02926 THUMP domain XCV1635 PF10672 S-adenosylmethionine-dependent methyltransferase XCV1636 PF01513 ATP-NAD kinase XCV1640 PF00929 Exonuclease XCV1640 PF08411 Exonuclease C-terminal XCV1641 PF01494 FAD binding domain XCV1642 PF00266 Aminotransferase class-V XCV1645 PF06052 3-hydroxyanthranilic acid dioxygenase XCV1646 PF00484 Carbonic anhydrase XCV1654 PF00072 Response regulator receiver domain XCV1654 PF00196 Bacterial regulatory proteins, luxR family XCV1656 PF04299 Putative FMN-binding domain XCV1659 PF00152 tRNA synthetases class II (D, K and N) XCV1659 PF01336 OB-fold nucleic acid binding domain XCV1660 PF01521 Iron-sulphur cluster biosynthesis XCV1661 PF01250 Ribosomal protein S6 XCV1662 PF01084 Ribosomal protein S18 XCV1663 PF03948 Ribosomal protein L9, C-terminal domain XCV1663 PF01281 Ribosomal protein L9, N-terminal domain XCV1664 PF02463 RecF/RecN/SMC N terminal domain XCV1665 PF04354 ZipA, C-terminal FtsZ-binding domain XCV1667 PF00155 Aminotransferase class I and II XCV1668 PF12826 Helix-hairpin-helix motif XCV1668 PF00533 BRCA1 C Terminus (BRCT) domain XCV1668 PF01653 NAD-dependent DNA ligase adenylation domain XCV1668 PF03119 NAD-dependent DNA ligase C4 zinc finger domain XCV1668 PF03120 NAD-dependent DNA ligase OB-fold domain XCV1669 PF00152 tRNA synthetases class II (D, K and N) XCV1671 PF01008 Initiation factor 2 subunit family XCV1672 PF00521 DNA gyrase/topoisomerase IV, subunit A XCV1672 PF03989 DNA gyrase C-terminal domain, beta-propeller XCV1673 PF13360 PQQ-like domain XCV1676 PF17391 Urocanase N-terminal domain XCV1676 PF01175 Urocanase Rossmann-like domain XCV1676 PF17392 Urocanase C-terminal domain XCV1678 PF00221 Aromatic amino acid lyase XCV1679 PF07969 Amidohydrolase family XCV1682 PF00392 Bacterial regulatory proteins, gntR family XCV1682 PF07702 UTRA domain XCV1687 PF01794 Ferric reductase like transmembrane component XCV1688 PF00174 Oxidoreductase molybdopterin binding domain XCV1689 PF00266 Aminotransferase class-V XCV1690 PF00800 Prephenate dehydratase XCV1690 PF01817 Chorismate mutase type II XCV1690 PF01842 ACT domain XCV1691 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XCV1693 PF03544 Gram-negative bacterial TonB protein C-terminal XCV1694 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XCV1694 PF02403 Seryl-tRNA synthetase N-terminal domain XCV1695 PF02525 Flavodoxin-like fold XCV1696 PF03466 LysR substrate binding domain XCV1696 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV1699 PF13333 Integrase core domain XCV1699 PF13276 HTH-like domain XCV1699 PF00665 Integrase core domain XCV1702 PF02203 Tar ligand binding domain homologue XCV1702 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV1702 PF00672 HAMP domain XCV1705 PF00072 Response regulator receiver domain XCV1705 PF13188 PAS domain XCV1705 PF08448 PAS fold XCV1705 PF00512 His Kinase A (phospho-acceptor) domain XCV1705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV1706 PF00486 Transcriptional regulatory protein, C terminal XCV1706 PF00072 Response regulator receiver domain XCV1707 PF06745 KaiC XCV1708 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV1708 PF13426 PAS domain XCV1708 PF00072 Response regulator receiver domain XCV1710 PF03918 Cytochrome C biogenesis protein XCV1711 PF08534 Redoxin XCV1712 PF01578 Cytochrome C assembly protein XCV1712 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XCV1713 PF03100 CcmE XCV1714 PF04995 Heme exporter protein D (CcmD) XCV1715 PF01578 Cytochrome C assembly protein XCV1716 PF00082 Subtilase family XCV1718 PF08281 Sigma-70, region 4 XCV1718 PF04542 Sigma-70 region 2 XCV1720 PF00034 Cytochrome c XCV1723 PF05523 WxcM-like, C-terminal XCV1724 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XCV1725 PF01943 Polysaccharide biosynthesis protein XCV1726 PF00535 Glycosyl transferase family 2 XCV1729 PF08241 Methyltransferase domain XCV1733 PF00534 Glycosyl transferases group 1 XCV1733 PF13579 Glycosyl transferase 4-like domain XCV1736 PF00005 ABC transporter XCV1737 PF00005 ABC transporter XCV1737 PF00664 ABC transporter transmembrane region XCV1739 PF00083 Sugar (and other) transporter XCV1740 PF00296 Luciferase-like monooxygenase XCV1743 PF03471 Transporter associated domain XCV1743 PF01595 Cyclin M transmembrane N-terminal domain XCV1743 PF00571 CBS domain XCV1745 PF01384 Phosphate transporter family XCV1748 PF00204 DNA gyrase B XCV1748 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV1748 PF01751 Toprim domain XCV1748 PF00986 DNA gyrase B subunit, carboxyl terminus XCV1749 PF00117 Glutamine amidotransferase class-I XCV1749 PF06418 CTP synthase N-terminus XCV1750 PF00793 DAHP synthetase I family XCV1752 PF03952 Enolase, N-terminal domain XCV1752 PF00113 Enolase, C-terminal TIM barrel domain XCV1753 PF04977 Septum formation initiator XCV1754 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase XCV1755 PF02542 YgbB family XCV1756 PF01142 tRNA pseudouridine synthase D (TruD) XCV1757 PF01713 Smr domain XCV1758 PF01975 Survival protein SurE XCV1760 PF09335 SNARE associated Golgi protein XCV1761 PF01551 Peptidase family M23 XCV1761 PF01476 LysM domain XCV1762 PF04430 Protein of unknown function (DUF498/DUF598) XCV1763 PF01985 CRS1 / YhbY (CRM) domain XCV1764 PF01728 FtsJ-like methyltransferase XCV1765 PF01434 Peptidase family M41 XCV1765 PF06480 FtsH Extracellular XCV1765 PF17862 AAA+ lid domain XCV1765 PF00004 ATPase family associated with various cellular activities (AAA) XCV1766 PF00809 Pterin binding enzyme XCV1768 PF17209 Hfq protein XCV1769 PF13167 GTP-binding GTPase N-terminal XCV1769 PF01926 50S ribosome-binding GTPase XCV1769 PF16360 GTP-binding GTPase Middle Region XCV1770 PF02464 Competence-damaged protein XCV1771 PF03109 ABC1 family XCV1772 PF01726 LexA DNA binding domain XCV1772 PF00717 Peptidase S24-like XCV1773 PF00154 recA bacterial DNA recombination protein XCV1774 PF02631 RecX family XCV1775 PF02272 DHHA1 domain XCV1775 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XCV1775 PF01411 tRNA synthetases class II (A) XCV1776 PF02599 Global regulator protein family XCV1778 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV1778 PF08447 PAS fold XCV1778 PF13426 PAS domain XCV1780 PF02678 Pirin XCV1780 PF17954 Quercetinase C-terminal cupin domain XCV1781 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV1781 PF03466 LysR substrate binding domain XCV1784 PF08543 Phosphomethylpyrimidine kinase XCV1787 PF02562 PhoH-like protein XCV1787 PF13638 PIN domain XCV1788 PF00578 AhpC/TSA family XCV1791 PF00701 Dihydrodipicolinate synthetase family XCV1793 PF00037 4Fe-4S binding domain XCV1793 PF11953 Domain of unknown function (DUF3470) XCV1794 PF05035 2-keto-3-deoxy-galactonokinase XCV1795 PF08450 SMP-30/Gluconolactonase/LRE-like region XCV1796 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XCV1796 PF13378 Enolase C-terminal domain-like XCV1797 PF01081 KDPG and KHG aldolase XCV1798 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV1798 PF03466 LysR substrate binding domain XCV1802 PF00942 Cellulose binding domain XCV1802 PF03442 Carbohydrate binding domain X2 XCV1805 PF16338 Domain of unknown function (DUF4968) XCV1805 PF17137 Domain of unknown function (DUF5110) XCV1805 PF01055 Glycosyl hydrolases family 31 XCV1807 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XCV1807 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XCV1809 PF00083 Sugar (and other) transporter XCV1812 PF01520 N-acetylmuramoyl-L-alanine amidase XCV1813 PF02649 Type I GTP cyclohydrolase folE2 XCV1814 PF01743 Poly A polymerase head domain XCV1814 PF12626 Polymerase A arginine-rich C-terminus XCV1814 PF12627 Probable RNA and SrmB- binding site of polymerase A XCV1815 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XCV1816 PF02548 Ketopantoate hydroxymethyltransferase XCV1817 PF02569 Pantoate-beta-alanine ligase XCV1818 PF02261 Aspartate decarboxylase XCV1819 PF00342 Phosphoglucose isomerase XCV1823 PF00933 Glycosyl hydrolase family 3 N terminal domain XCV1823 PF14310 Fibronectin type III-like domain XCV1823 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCV1824 PF00474 Sodium:solute symporter family XCV1825 PF00563 EAL domain XCV1825 PF01590 GAF domain XCV1825 PF00360 Phytochrome region XCV1825 PF00990 Diguanylate cyclase, GGDEF domain XCV1826 PF02013 Cellulose or protein binding domain XCV1826 PF00150 Cellulase (glycosyl hydrolase family 5) XCV1827 PF00072 Response regulator receiver domain XCV1829 PF04551 GcpE protein XCV1830 PF01569 PAP2 superfamily XCV1831 PF07690 Major Facilitator Superfamily XCV1832 PF01177 Asp/Glu/Hydantoin racemase XCV1833 PF00892 EamA-like transporter family XCV1834 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain XCV1834 PF01565 FAD binding domain XCV1835 PF01180 Dihydroorotate dehydrogenase XCV1838 PF00171 Aldehyde dehydrogenase family XCV1840 PF13276 HTH-like domain XCV1840 PF13683 Integrase core domain XCV1841 PF01527 Transposase XCV1844 PF13333 Integrase core domain XCV1844 PF00665 Integrase core domain XCV1844 PF13276 HTH-like domain XCV1846 PF13683 Integrase core domain XCV1846 PF13276 HTH-like domain XCV1847 PF01527 Transposase XCV1849 PF13683 Integrase core domain XCV1849 PF13276 HTH-like domain XCV1850 PF13683 Integrase core domain XCV1850 PF13276 HTH-like domain XCV1851 PF01527 Transposase XCV1859 PF17287 POTRA domain XCV1859 PF08479 POTRA domain, ShlB-type XCV1859 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB XCV1860 PF04829 Pre-toxin domain with VENN motif XCV1860 PF05860 haemagglutination activity domain XCV1860 PF13332 Hemagglutinin repeat XCV1860 PF05594 Haemagluttinin repeat XCV1860 PF15526 Novel toxin 21 XCV1861 PF05860 haemagglutination activity domain XCV1861 PF13332 Hemagglutinin repeat XCV1861 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain XCV1861 PF13018 Extended Signal Peptide of Type V secretion system XCV1861 PF05594 Haemagluttinin repeat XCV1862 PF01527 Transposase XCV1863 PF13683 Integrase core domain XCV1863 PF13276 HTH-like domain XCV1865 PF03073 TspO/MBR family XCV1866 PF00742 Homoserine dehydrogenase XCV1866 PF13840 ACT domain XCV1866 PF01842 ACT domain XCV1866 PF03447 Homoserine dehydrogenase, NAD binding domain XCV1866 PF00696 Amino acid kinase family XCV1867 PF00288 GHMP kinases N terminal domain XCV1867 PF08544 GHMP kinases C terminal XCV1869 PF14821 Threonine synthase N terminus XCV1869 PF00291 Pyridoxal-phosphate dependent enzyme XCV1871 PF00027 Cyclic nucleotide-binding domain XCV1871 PF13545 Crp-like helix-turn-helix domain XCV1872 PF03129 Anticodon binding domain XCV1872 PF13393 Histidyl-tRNA synthetase XCV1874 PF08029 HisG, C-terminal domain XCV1874 PF01634 ATP phosphoribosyltransferase XCV1875 PF00815 Histidinol dehydrogenase XCV1876 PF00155 Aminotransferase class I and II XCV1877 PF00475 Imidazoleglycerol-phosphate dehydratase XCV1878 PF00117 Glutamine amidotransferase class-I XCV1879 PF00977 Histidine biosynthesis protein XCV1880 PF00977 Histidine biosynthesis protein XCV1881 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase XCV1881 PF01502 Phosphoribosyl-AMP cyclohydrolase XCV1885 PF03079 ARD/ARD' family XCV1886 PF00596 Class II Aldolase and Adducin N-terminal domain XCV1887 PF13520 Amino acid permease XCV1888 PF13520 Amino acid permease XCV1890 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XCV1890 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XCV1891 PF01565 FAD binding domain XCV1891 PF02913 FAD linked oxidases, C-terminal domain XCV1895 PF08207 Elongation factor P (EF-P) KOW-like domain XCV1895 PF09285 Elongation factor P, C-terminal XCV1895 PF01132 Elongation factor P (EF-P) OB domain XCV1896 PF00106 short chain dehydrogenase XCV1897 PF00682 HMGL-like XCV1899 PF00378 Enoyl-CoA hydratase/isomerase XCV1901 PF07670 Nucleoside recognition XCV1901 PF02421 Ferrous iron transport protein B XCV1901 PF07664 Ferrous iron transport protein B C terminus XCV1904 PF00155 Aminotransferase class I and II XCV1905 PF03473 MOSC domain XCV1905 PF03475 3-alpha domain XCV1906 PF05173 Dihydrodipicolinate reductase, C-terminus XCV1906 PF01113 Dihydrodipicolinate reductase, N-terminus XCV1907 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain XCV1907 PF00117 Glutamine amidotransferase class-I XCV1909 PF02142 MGS-like domain XCV1909 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XCV1909 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XCV1910 PF01272 Transcription elongation factor, GreA/GreB, C-term XCV1910 PF03449 Transcription elongation factor, N-terminal XCV1912 PF01368 DHH family XCV1912 PF02272 DHHA1 domain XCV1912 PF17768 RecJ OB domain XCV1914 PF04397 LytTr DNA-binding domain XCV1914 PF00072 Response regulator receiver domain XCV1915 PF03462 PCRF domain XCV1915 PF00472 RF-1 domain XCV1916 PF00152 tRNA synthetases class II (D, K and N) XCV1916 PF01336 OB-fold nucleic acid binding domain XCV1917 PF00072 Response regulator receiver domain XCV1918 PF01627 Hpt domain XCV1918 PF00072 Response regulator receiver domain XCV1918 PF00512 His Kinase A (phospho-acceptor) domain XCV1918 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV1919 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV1919 PF00512 His Kinase A (phospho-acceptor) domain XCV1919 PF01627 Hpt domain XCV1919 PF00072 Response regulator receiver domain XCV1920 PF00378 Enoyl-CoA hydratase/isomerase XCV1921 PF00501 AMP-binding enzyme XCV1921 PF13193 AMP-binding enzyme C-terminal domain XCV1924 PF00330 Aconitase family (aconitate hydratase) XCV1924 PF00694 Aconitase C-terminal domain XCV1927 PF11791 Aconitate B N-terminal domain XCV1927 PF06434 Aconitate hydratase 2 N-terminus XCV1927 PF00330 Aconitase family (aconitate hydratase) XCV1928 PF00561 alpha/beta hydrolase fold XCV1929 PF03707 Bacterial signalling protein N terminal repeat XCV1929 PF00990 Diguanylate cyclase, GGDEF domain XCV1929 PF00563 EAL domain XCV1930 PF01339 CheB methylesterase XCV1930 PF00072 Response regulator receiver domain XCV1931 PF03975 CheD chemotactic sensory transduction XCV1932 PF01739 CheR methyltransferase, SAM binding domain XCV1932 PF03705 CheR methyltransferase, all-alpha domain XCV1933 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV1933 PF02203 Tar ligand binding domain homologue XCV1933 PF00672 HAMP domain XCV1935 PF01584 CheW-like domain XCV1936 PF07317 Flagellar regulator YcgR XCV1936 PF07238 PilZ domain XCV1938 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV1938 PF00672 HAMP domain XCV1938 PF02203 Tar ligand binding domain homologue XCV1939 PF00672 HAMP domain XCV1939 PF02203 Tar ligand binding domain homologue XCV1939 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV1940 PF00672 HAMP domain XCV1940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV1940 PF02203 Tar ligand binding domain homologue XCV1941 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV1941 PF02203 Tar ligand binding domain homologue XCV1941 PF00672 HAMP domain XCV1942 PF02203 Tar ligand binding domain homologue XCV1942 PF00672 HAMP domain XCV1942 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV1944 PF02203 Tar ligand binding domain homologue XCV1944 PF00672 HAMP domain XCV1944 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV1945 PF02203 Tar ligand binding domain homologue XCV1945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV1945 PF00672 HAMP domain XCV1947 PF00672 HAMP domain XCV1947 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV1948 PF02203 Tar ligand binding domain homologue XCV1948 PF00672 HAMP domain XCV1948 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV1951 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV1951 PF02203 Tar ligand binding domain homologue XCV1951 PF00672 HAMP domain XCV1952 PF02203 Tar ligand binding domain homologue XCV1952 PF00672 HAMP domain XCV1952 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV1954 PF00672 HAMP domain XCV1954 PF02203 Tar ligand binding domain homologue XCV1954 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV1955 PF02203 Tar ligand binding domain homologue XCV1955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV1955 PF00672 HAMP domain XCV1956 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV1956 PF02895 Signal transducing histidine kinase, homodimeric domain XCV1956 PF01627 Hpt domain XCV1956 PF01584 CheW-like domain XCV1956 PF09078 CheY binding XCV1957 PF00072 Response regulator receiver domain XCV1959 PF01584 CheW-like domain XCV1960 PF13614 AAA domain XCV1961 PF13677 Membrane MotB of proton-channel complex MotA/MotB XCV1961 PF00691 OmpA family XCV1962 PF01618 MotA/TolQ/ExbB proton channel family XCV1968 PF01527 Transposase XCV1969 PF13683 Integrase core domain XCV1969 PF13276 HTH-like domain XCV1974 PF01584 CheW-like domain XCV1974 PF02895 Signal transducing histidine kinase, homodimeric domain XCV1974 PF07194 P2 response regulator binding domain XCV1974 PF01627 Hpt domain XCV1974 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV1975 PF04344 Chemotaxis phosphatase, CheZ XCV1976 PF00072 Response regulator receiver domain XCV1977 PF04539 Sigma-70 region 3 XCV1977 PF04545 Sigma-70, region 4 XCV1977 PF04542 Sigma-70 region 2 XCV1978 PF10609 NUBPL iron-transfer P-loop NTPase XCV1979 PF00448 SRP54-type protein, GTPase domain XCV1980 PF00771 FHIPEP family XCV1981 PF01312 FlhB HrpN YscU SpaS Family XCV1982 PF00990 Diguanylate cyclase, GGDEF domain XCV1982 PF00563 EAL domain XCV1982 PF03707 Bacterial signalling protein N terminal repeat XCV1983 PF03707 Bacterial signalling protein N terminal repeat XCV1983 PF00563 EAL domain XCV1983 PF13188 PAS domain XCV1983 PF00990 Diguanylate cyclase, GGDEF domain XCV1985 PF00563 EAL domain XCV1985 PF03707 Bacterial signalling protein N terminal repeat XCV1985 PF00990 Diguanylate cyclase, GGDEF domain XCV1985 PF13188 PAS domain XCV1986 PF01311 Bacterial export proteins, family 1 XCV1987 PF01313 Bacterial export proteins, family 3 XCV1988 PF00813 FliP family XCV1989 PF04347 Flagellar biosynthesis protein, FliO XCV1990 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XCV1991 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XCV1991 PF02154 Flagellar motor switch protein FliM XCV1995 PF18269 T3SS EscN ATPase C-terminal domain XCV1995 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCV1997 PF01706 FliG C-terminal domain XCV1997 PF14841 FliG middle domain XCV1997 PF14842 FliG N-terminal domain XCV1998 PF08345 Flagellar M-ring protein C-terminal XCV1998 PF01514 Secretory protein of YscJ/FliF family XCV1999 PF02049 Flagellar hook-basal body complex protein FliE XCV2000 PF00535 Glycosyl transferase family 2 XCV2000 PF00534 Glycosyl transferases group 1 XCV2002 PF05050 Methyltransferase FkbM domain XCV2003 PF02348 Cytidylyltransferase XCV2011 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XCV2011 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XCV2013 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XCV2014 PF02954 Bacterial regulatory protein, Fis family XCV2014 PF00158 Sigma-54 interaction domain XCV2014 PF00072 Response regulator receiver domain XCV2015 PF00072 Response regulator receiver domain XCV2015 PF01339 CheB methylesterase XCV2016 PF00309 Sigma-54 factor, Activator interacting domain (AID) XCV2016 PF04963 Sigma-54 factor, core binding domain XCV2016 PF04552 Sigma-54, DNA binding domain XCV2017 PF00196 Bacterial regulatory proteins, luxR family XCV2017 PF00072 Response regulator receiver domain XCV2020 PF02561 Flagellar protein FliS XCV2021 PF07195 Flagellar hook-associated protein 2 C-terminus XCV2021 PF07196 Flagellin hook IN motif XCV2021 PF02465 Flagellar hook-associated protein 2 N-terminus XCV2022 PF00669 Bacterial flagellin N-terminal helical region XCV2022 PF00700 Bacterial flagellin C-terminal helical region XCV2023 PF00700 Bacterial flagellin C-terminal helical region XCV2023 PF00669 Bacterial flagellin N-terminal helical region XCV2024 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCV2024 PF07196 Flagellin hook IN motif XCV2025 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase XCV2025 PF10135 Rod binding protein XCV2026 PF02119 Flagellar P-ring protein XCV2027 PF02107 Flagellar L-ring protein XCV2028 PF00460 Flagella basal body rod protein XCV2028 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCV2029 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCV2029 PF00460 Flagella basal body rod protein XCV2030 PF07559 Flagellar basal body protein FlaE XCV2030 PF00460 Flagella basal body rod protein XCV2030 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCV2031 PF03963 Flagellar hook capping protein - N-terminal region XCV2032 PF00460 Flagella basal body rod protein XCV2032 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCV2034 PF00072 Response regulator receiver domain XCV2034 PF01584 CheW-like domain XCV2038 PF00989 PAS fold XCV2038 PF13188 PAS domain XCV2038 PF13426 PAS domain XCV2038 PF00512 His Kinase A (phospho-acceptor) domain XCV2038 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV2039 PF00990 Diguanylate cyclase, GGDEF domain XCV2039 PF00563 EAL domain XCV2039 PF03707 Bacterial signalling protein N terminal repeat XCV2040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV2040 PF07730 Histidine kinase XCV2041 PF00563 EAL domain XCV2041 PF00990 Diguanylate cyclase, GGDEF domain XCV2041 PF03707 Bacterial signalling protein N terminal repeat XCV2044 PF12729 Four helix bundle sensory module for signal transduction XCV2044 PF00672 HAMP domain XCV2044 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV2045 PF04356 Protein of unknown function (DUF489) XCV2047 PF00293 NUDIX domain XCV2048 PF02617 ATP-dependent Clp protease adaptor protein ClpS XCV2049 PF10431 C-terminal, D2-small domain, of ClpB protein XCV2049 PF02861 Clp amino terminal domain, pathogenicity island component XCV2049 PF00004 ATPase family associated with various cellular activities (AAA) XCV2049 PF07724 AAA domain (Cdc48 subfamily) XCV2049 PF17871 AAA lid domain XCV2051 PF01176 Translation initiation factor 1A / IF-1 XCV2052 PF03588 Leucyl/phenylalanyl-tRNA protein transferase XCV2055 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCV2056 PF01580 FtsK/SpoIIIE family XCV2056 PF09397 Ftsk gamma domain XCV2056 PF13491 4TM region of DNA translocase FtsK/SpoIIIE XCV2056 PF17854 FtsK alpha domain XCV2058 PF03548 Outer membrane lipoprotein carrier protein LolA XCV2060 PF16193 AAA C-terminal domain XCV2060 PF00004 ATPase family associated with various cellular activities (AAA) XCV2060 PF12002 MgsA AAA+ ATPase C terminal XCV2061 PF02537 CrcB-like protein, Camphor Resistance (CrcB) XCV2063 PF00108 Thiolase, N-terminal domain XCV2063 PF02803 Thiolase, C-terminal domain XCV2064 PF00378 Enoyl-CoA hydratase/isomerase XCV2064 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XCV2064 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XCV2066 PF00334 Nucleoside diphosphate kinase XCV2067 PF04055 Radical SAM superfamily XCV2069 PF13464 Domain of unknown function (DUF4115) XCV2071 PF13360 PQQ-like domain XCV2071 PF01011 PQQ enzyme repeat XCV2072 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal XCV2072 PF01926 50S ribosome-binding GTPase XCV2073 PF03454 MoeA C-terminal region (domain IV) XCV2073 PF00994 Probable molybdopterin binding domain XCV2073 PF03453 MoeA N-terminal region (domain I and II) XCV2074 PF00899 ThiF family XCV2079 PF08240 Alcohol dehydrogenase GroES-like domain XCV2079 PF13823 Alcohol dehydrogenase GroES-associated XCV2079 PF00107 Zinc-binding dehydrogenase XCV2081 PF03372 Endonuclease/Exonuclease/phosphatase family XCV2083 PF03454 MoeA C-terminal region (domain IV) XCV2083 PF03453 MoeA N-terminal region (domain I and II) XCV2083 PF00994 Probable molybdopterin binding domain XCV2084 PF12804 MobA-like NTP transferase domain XCV2089 PF10414 Sirohaem synthase dimerisation region XCV2089 PF14824 Sirohaem biosynthesis protein central XCV2089 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XCV2090 PF03861 ANTAR domain XCV2090 PF00072 Response regulator receiver domain XCV2092 PF07690 Major Facilitator Superfamily XCV2093 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCV2093 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XCV2093 PF04324 BFD-like [2Fe-2S] binding domain XCV2093 PF18267 Rubredoxin NAD+ reductase C-terminal domain XCV2093 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XCV2094 PF00355 Rieske [2Fe-2S] domain XCV2094 PF11723 Homotrimeric ring hydroxylase XCV2095 PF00384 Molybdopterin oxidoreductase XCV2095 PF04879 Molybdopterin oxidoreductase Fe4S4 domain XCV2095 PF01568 Molydopterin dinucleotide binding domain XCV2095 PF04324 BFD-like [2Fe-2S] binding domain XCV2096 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XCV2099 PF05974 Domain of unknown function (DUF892) XCV2102 PF00990 Diguanylate cyclase, GGDEF domain XCV2102 PF00563 EAL domain XCV2102 PF08448 PAS fold XCV2102 PF08447 PAS fold XCV2103 PF12951 Passenger-associated-transport-repeat XCV2104 PF00072 Response regulator receiver domain XCV2104 PF00196 Bacterial regulatory proteins, luxR family XCV2105 PF00512 His Kinase A (phospho-acceptor) domain XCV2105 PF08448 PAS fold XCV2105 PF13426 PAS domain XCV2105 PF00072 Response regulator receiver domain XCV2105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV2107 PF00873 AcrB/AcrD/AcrF family XCV2108 PF00529 HlyD membrane-fusion protein of T1SS XCV2108 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCV2109 PF00082 Subtilase family XCV2109 PF03797 Autotransporter beta-domain XCV2111 PF06580 Histidine kinase XCV2111 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV2111 PF07694 5TMR of 5TMR-LYT XCV2112 PF04397 LytTr DNA-binding domain XCV2112 PF00072 Response regulator receiver domain XCV2113 PF00144 Beta-lactamase XCV2115 PF07995 Glucose / Sorbosone dehydrogenase XCV2116 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XCV2122 PF05638 Type VI secretion system effector, Hcp XCV2127 PF10431 C-terminal, D2-small domain, of ClpB protein XCV2127 PF17871 AAA lid domain XCV2127 PF07724 AAA domain (Cdc48 subfamily) XCV2127 PF00004 ATPase family associated with various cellular activities (AAA) XCV2133 PF04717 Type VI secretion system, phage-baseplate injector XCV2141 PF00069 Protein kinase domain XCV2144 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV2144 PF03466 LysR substrate binding domain XCV2145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV2145 PF00512 His Kinase A (phospho-acceptor) domain XCV2146 PF03150 Di-haem cytochrome c peroxidase XCV2146 PF00034 Cytochrome c XCV2147 PF00486 Transcriptional regulatory protein, C terminal XCV2147 PF00072 Response regulator receiver domain XCV2149 PF05199 GMC oxidoreductase XCV2149 PF00732 GMC oxidoreductase XCV2150 PF00067 Cytochrome P450 XCV2151 PF00072 Response regulator receiver domain XCV2151 PF00196 Bacterial regulatory proteins, luxR family XCV2152 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV2152 PF07730 Histidine kinase XCV2153 PF00196 Bacterial regulatory proteins, luxR family XCV2153 PF00072 Response regulator receiver domain XCV2155 PF13185 GAF domain XCV2155 PF13492 GAF domain XCV2155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV2155 PF07730 Histidine kinase XCV2156 PF03421 YopJ Serine/Threonine acetyltransferase XCV2157 PF13276 HTH-like domain XCV2157 PF13333 Integrase core domain XCV2157 PF00665 Integrase core domain XCV2167 PF10544 T5orf172 domain XCV2169 PF13749 Putative ATP-dependent DNA helicase recG C-terminal XCV2169 PF00270 DEAD/DEAH box helicase XCV2169 PF17191 RecG wedge domain XCV2171 PF03352 Methyladenine glycosylase XCV2174 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV2174 PF03466 LysR substrate binding domain XCV2175 PF00248 Aldo/keto reductase family XCV2176 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) XCV2177 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus XCV2177 PF00361 Proton-conducting membrane transporter XCV2177 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XCV2178 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV2178 PF03466 LysR substrate binding domain XCV2179 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCV2179 PF14759 Reductase C-terminal XCV2180 PF00111 2Fe-2S iron-sulfur cluster binding domain XCV2181 PF00067 Cytochrome P450 XCV2182 PF14525 AraC-binding-like domain XCV2182 PF12833 Helix-turn-helix domain XCV2183 PF03601 Conserved hypothetical protein 698 XCV2184 PF03466 LysR substrate binding domain XCV2184 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV2187 PF00072 Response regulator receiver domain XCV2187 PF00196 Bacterial regulatory proteins, luxR family XCV2188 PF07730 Histidine kinase XCV2188 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV2190 PF00857 Isochorismatase family XCV2192 PF07969 Amidohydrolase family XCV2193 PF05977 Transmembrane secretion effector XCV2196 PF00561 alpha/beta hydrolase fold XCV2197 PF01566 Natural resistance-associated macrophage protein XCV2198 PF02742 Iron dependent repressor, metal binding and dimerisation domain XCV2198 PF01325 Iron dependent repressor, N-terminal DNA binding domain XCV2199 PF14437 MafB19-like deaminase XCV2200 PF00929 Exonuclease XCV2201 PF05552 Conserved TM helix XCV2201 PF00924 Mechanosensitive ion channel XCV2202 PF00391 PEP-utilising enzyme, mobile domain XCV2202 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain XCV2202 PF02896 PEP-utilising enzyme, TIM barrel domain XCV2203 PF03618 Kinase/pyrophosphorylase XCV2207 PF01066 CDP-alcohol phosphatidyltransferase XCV2209 PF00561 alpha/beta hydrolase fold XCV2212 PF01266 FAD dependent oxidoreductase XCV2212 PF00355 Rieske [2Fe-2S] domain XCV2214 PF16921 Tex protein YqgF-like domain XCV2214 PF09371 Tex-like protein N-terminal domain XCV2214 PF00575 S1 RNA binding domain XCV2214 PF17674 HHH domain XCV2215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV2215 PF00512 His Kinase A (phospho-acceptor) domain XCV2215 PF09308 LuxQ, periplasmic XCV2215 PF00072 Response regulator receiver domain XCV2217 PF13356 Arm DNA-binding domain XCV2217 PF00589 Phage integrase family XCV2228 PF00034 Cytochrome c XCV2230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCV2231 PF00873 AcrB/AcrD/AcrF family XCV2232 PF00873 AcrB/AcrD/AcrF family XCV2233 PF01081 KDPG and KHG aldolase XCV2234 PF00920 Dehydratase family XCV2235 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase XCV2236 PF02685 Glucokinase XCV2237 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XCV2237 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XCV2238 PF00005 ABC transporter XCV2238 PF17912 MalK OB fold domain XCV2239 PF01571 Aminomethyltransferase folate-binding domain XCV2242 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XCV2243 PF02910 Fumarate reductase flavoprotein C-term XCV2243 PF00890 FAD binding domain XCV2245 PF13085 2Fe-2S iron-sulfur cluster binding domain XCV2246 PF03937 Flavinator of succinate dehydrogenase XCV2248 PF12704 MacB-like periplasmic core domain XCV2248 PF02687 FtsX-like permease family XCV2249 PF00005 ABC transporter XCV2251 PF00753 Metallo-beta-lactamase superfamily XCV2251 PF03772 Competence protein XCV2252 PF01618 MotA/TolQ/ExbB proton channel family XCV2254 PF00005 ABC transporter XCV2254 PF00664 ABC transporter transmembrane region XCV2255 PF02606 Tetraacyldisaccharide-1-P 4'-kinase XCV2256 PF02348 Cytidylyltransferase XCV2257 PF01451 Low molecular weight phosphotyrosine protein phosphatase XCV2259 PF02151 UvrB/uvrC motif XCV2259 PF01541 GIY-YIG catalytic domain XCV2259 PF08459 UvrC Helix-hairpin-helix N-terminal XCV2260 PF01066 CDP-alcohol phosphatidyltransferase XCV2261 PF13356 Arm DNA-binding domain XCV2261 PF00589 Phage integrase family XCV2262 PF13276 HTH-like domain XCV2262 PF00665 Integrase core domain XCV2262 PF13333 Integrase core domain XCV2273 PF13700 Domain of unknown function (DUF4158) XCV2273 PF01526 Tn3 transposase DDE domain XCV2286 PF00145 C-5 cytosine-specific DNA methylase XCV2287 PF01131 DNA topoisomerase XCV2287 PF01751 Toprim domain XCV2288 PF00436 Single-strand binding protein family XCV2296 PF13276 HTH-like domain XCV2296 PF13333 Integrase core domain XCV2296 PF00665 Integrase core domain XCV2298 PF00589 Phage integrase family XCV2298 PF13356 Arm DNA-binding domain XCV2300 PF01381 Helix-turn-helix XCV2301 PF03466 LysR substrate binding domain XCV2301 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV2303 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCV2303 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XCV2304 PF01925 Sulfite exporter TauE/SafE XCV2306 PF13098 Thioredoxin-like domain XCV2307 PF08534 Redoxin XCV2308 PF02683 Cytochrome C biogenesis protein transmembrane region XCV2308 PF11412 Disulphide bond corrector protein DsbC XCV2309 PF00486 Transcriptional regulatory protein, C terminal XCV2309 PF00072 Response regulator receiver domain XCV2310 PF00512 His Kinase A (phospho-acceptor) domain XCV2310 PF08521 Two-component sensor kinase N-terminal XCV2310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV2311 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCV2313 PF00085 Thioredoxin XCV2314 PF01022 Bacterial regulatory protein, arsR family XCV2315 PF01323 DSBA-like thioredoxin domain XCV2315 PF00085 Thioredoxin XCV2316 PF12706 Beta-lactamase superfamily domain XCV2318 PF03595 Voltage-dependent anion channel XCV2320 PF13610 DDE domain XCV2321 PF01526 Tn3 transposase DDE domain XCV2321 PF13700 Domain of unknown function (DUF4158) XCV2323 PF03466 LysR substrate binding domain XCV2323 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV2324 PF03167 Uracil DNA glycosylase superfamily XCV2325 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase XCV2326 PF01636 Phosphotransferase enzyme family XCV2327 PF02796 Helix-turn-helix domain of resolvase XCV2327 PF00239 Resolvase, N terminal domain XCV2329 PF13610 DDE domain XCV2332 PF00155 Aminotransferase class I and II XCV2333 PF08240 Alcohol dehydrogenase GroES-like domain XCV2333 PF00107 Zinc-binding dehydrogenase XCV2334 PF07690 Major Facilitator Superfamily XCV2335 PF09278 MerR, DNA binding XCV2335 PF00376 MerR family regulatory protein XCV2336 PF00403 Heavy-metal-associated domain XCV2337 PF01022 Bacterial regulatory protein, arsR family XCV2338 PF01545 Cation efflux family XCV2340 PF13610 DDE domain XCV2349 PF01526 Tn3 transposase DDE domain XCV2349 PF13700 Domain of unknown function (DUF4158) XCV2350 PF07690 Major Facilitator Superfamily XCV2351 PF13276 HTH-like domain XCV2351 PF13683 Integrase core domain XCV2353 PF13610 DDE domain XCV2354 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV2354 PF03466 LysR substrate binding domain XCV2365 PF04002 RadC-like JAB domain XCV2384 PF13442 Cytochrome C oxidase, cbb3-type, subunit III XCV2384 PF00034 Cytochrome c XCV2405 PF00145 C-5 cytosine-specific DNA methylase XCV2406 PF01131 DNA topoisomerase XCV2406 PF01751 Toprim domain XCV2407 PF00436 Single-strand binding protein family XCV2414 PF13614 AAA domain XCV2417 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XCV2417 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XCV2417 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XCV2419 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCV2422 PF00196 Bacterial regulatory proteins, luxR family XCV2422 PF00072 Response regulator receiver domain XCV2423 PF00575 S1 RNA binding domain XCV2423 PF10150 Ribonuclease E/G family XCV2423 PF12111 Polyribonucleotide phosphorylase C terminal XCV2424 PF01479 S4 domain XCV2424 PF00849 RNA pseudouridylate synthase XCV2425 PF11737 Protein of unknown function (DUF3300) XCV2426 PF02535 ZIP Zinc transporter XCV2428 PF01329 Pterin 4 alpha carbinolamine dehydratase XCV2429 PF01106 NifU-like domain XCV2432 PF00529 HlyD membrane-fusion protein of T1SS XCV2432 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCV2433 PF00873 AcrB/AcrD/AcrF family XCV2434 PF05598 Transposase domain (DUF772) XCV2435 PF00156 Phosphoribosyl transferase domain XCV2439 PF01526 Tn3 transposase DDE domain XCV2439 PF13700 Domain of unknown function (DUF4158) XCV2440 PF13406 Transglycosylase SLT domain XCV2441 PF01925 Sulfite exporter TauE/SafE XCV2444 PF04143 Sulphur transport XCV2445 PF00753 Metallo-beta-lactamase superfamily XCV2448 PF07859 alpha/beta hydrolase fold XCV2468 PF17091 Inovirus G7P protein XCV2470 PF02303 Helix-destabilising protein XCV2476 PF01695 IstB-like ATP binding protein XCV2478 PF13333 Integrase core domain XCV2478 PF00665 Integrase core domain XCV2478 PF13276 HTH-like domain XCV2484 PF00589 Phage integrase family XCV2484 PF13356 Arm DNA-binding domain XCV2485 PF02540 NAD synthase XCV2485 PF00958 GMP synthase C terminal domain XCV2485 PF00117 Glutamine amidotransferase class-I XCV2486 PF00571 CBS domain XCV2486 PF00478 IMP dehydrogenase / GMP reductase domain XCV2487 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain XCV2487 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain XCV2489 PF00999 Sodium/hydrogen exchanger family XCV2489 PF02254 TrkA-N domain XCV2490 PF00483 Nucleotidyl transferase XCV2491 PF02719 Polysaccharide biosynthesis protein XCV2492 PF00953 Glycosyl transferase family 4 XCV2493 PF18073 Rubredoxin metal binding domain XCV2495 PF00216 Bacterial DNA-binding protein XCV2496 PF00575 S1 RNA binding domain XCV2497 PF02224 Cytidylate kinase XCV2498 PF00444 Ribosomal protein L36 XCV2500 PF04371 Porphyromonas-type peptidyl-arginine deiminase XCV2501 PF00795 Carbon-nitrogen hydrolase XCV2506 PF00528 Binding-protein-dependent transport system inner membrane component XCV2507 PF00528 Binding-protein-dependent transport system inner membrane component XCV2511 PF00356 Bacterial regulatory proteins, lacI family XCV2514 PF03795 YCII-related domain XCV2515 PF02616 Segregation and condensation protein ScpA XCV2516 PF04079 Segregation and condensation complex subunit ScpB XCV2517 PF00849 RNA pseudouridylate synthase XCV2517 PF01479 S4 domain XCV2520 PF00795 Carbon-nitrogen hydrolase XCV2521 PF00155 Aminotransferase class I and II XCV2522 PF00005 ABC transporter XCV2523 PF03379 CcmB protein XCV2524 PF01578 Cytochrome C assembly protein XCV2526 PF03100 CcmE XCV2527 PF01578 Cytochrome C assembly protein XCV2527 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XCV2528 PF08534 Redoxin XCV2529 PF03918 Cytochrome C biogenesis protein XCV2531 PF00561 alpha/beta hydrolase fold XCV2532 PF00313 'Cold-shock' DNA-binding domain XCV2533 PF00664 ABC transporter transmembrane region XCV2533 PF00005 ABC transporter XCV2534 PF00664 ABC transporter transmembrane region XCV2534 PF00005 ABC transporter XCV2535 PF01654 Cytochrome bd terminal oxidase subunit I XCV2536 PF02322 Cytochrome bd terminal oxidase subunit II XCV2539 PF02129 X-Pro dipeptidyl-peptidase (S15 family) XCV2539 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain XCV2541 PF00171 Aldehyde dehydrogenase family XCV2542 PF00696 Amino acid kinase family XCV2542 PF01472 PUA domain XCV2544 PF00206 Lyase XCV2545 PF01118 Semialdehyde dehydrogenase, NAD binding domain XCV2547 PF00696 Amino acid kinase family XCV2547 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase XCV2550 PF00764 Arginosuccinate synthase XCV2551 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XCV2551 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XCV2553 PF01406 tRNA synthetases class I (C) catalytic domain XCV2553 PF09190 DALR domain XCV2554 PF02657 Fe-S metabolism associated domain XCV2556 PF01258 Prokaryotic dksA/traR C4-type zinc finger XCV2558 PF01809 Putative membrane protein insertion efficiency factor XCV2559 PF01979 Amidohydrolase family XCV2560 PF01551 Peptidase family M23 XCV2560 PF08460 Bacterial SH3 domain XCV2563 PF06751 Ethanolamine ammonia lyase large subunit (EutB) XCV2564 PF05985 Ethanolamine ammonia-lyase light chain (EutC) XCV2566 PF00753 Metallo-beta-lactamase superfamily XCV2571 PF00295 Glycosyl hydrolases family 28 XCV2573 PF13419 Haloacid dehalogenase-like hydrolase XCV2575 PF01979 Amidohydrolase family XCV2577 PF09285 Elongation factor P, C-terminal XCV2577 PF08207 Elongation factor P (EF-P) KOW-like domain XCV2577 PF01132 Elongation factor P (EF-P) OB domain XCV2578 PF04055 Radical SAM superfamily XCV2579 PF13188 PAS domain XCV2579 PF03707 Bacterial signalling protein N terminal repeat XCV2579 PF00563 EAL domain XCV2579 PF00990 Diguanylate cyclase, GGDEF domain XCV2581 PF00588 SpoU rRNA Methylase family XCV2582 PF00459 Inositol monophosphatase family XCV2583 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XCV2583 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XCV2584 PF00545 ribonuclease XCV2587 PF00271 Helicase conserved C-terminal domain XCV2587 PF00270 DEAD/DEAH box helicase XCV2587 PF03880 DbpA RNA binding domain XCV2588 PF00156 Phosphoribosyl transferase domain XCV2589 PF02696 Uncharacterized ACR, YdiU/UPF0061 family XCV2590 PF00135 Carboxylesterase family XCV2591 PF02798 Glutathione S-transferase, N-terminal domain XCV2591 PF14497 Glutathione S-transferase, C-terminal domain XCV2592 PF00313 'Cold-shock' DNA-binding domain XCV2593 PF07152 YaeQ protein XCV2595 PF00563 EAL domain XCV2595 PF00990 Diguanylate cyclase, GGDEF domain XCV2595 PF00072 Response regulator receiver domain XCV2596 PF01435 Peptidase family M48 XCV2597 PF00749 tRNA synthetases class I (E and Q), catalytic domain XCV2598 PF00106 short chain dehydrogenase XCV2599 PF05233 PHB accumulation regulatory domain XCV2599 PF07879 PHB/PHA accumulation regulator DNA-binding domain XCV2602 PF01119 DNA mismatch repair protein, C-terminal domain XCV2602 PF08676 MutL C terminal dimerisation domain XCV2603 PF11741 AMIN domain XCV2603 PF01520 N-acetylmuramoyl-L-alanine amidase XCV2604 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE XCV2605 PF03853 YjeF-related protein N-terminus XCV2605 PF01256 Carbohydrate kinase XCV2606 PF08331 Domain of unknown function (DUF1730) XCV2607 PF13742 OB-fold nucleic acid binding domain XCV2607 PF02601 Exonuclease VII, large subunit XCV2610 PF03781 Sulfatase-modifying factor enzyme 1 XCV2611 PF01612 3'-5' exonuclease XCV2611 PF00570 HRDC domain XCV2612 PF04679 ATP dependent DNA ligase C terminal region XCV2612 PF01068 ATP dependent DNA ligase domain XCV2612 PF13298 DNA polymerase Ligase (LigD) XCV2615 PF13356 Arm DNA-binding domain XCV2615 PF00589 Phage integrase family XCV2617 PF01527 Transposase XCV2618 PF13276 HTH-like domain XCV2618 PF13683 Integrase core domain XCV2619 PF01381 Helix-turn-helix XCV2624 PF01584 CheW-like domain XCV2625 PF00672 HAMP domain XCV2625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV2625 PF02743 Cache domain XCV2626 PF02245 Methylpurine-DNA glycosylase (MPG) XCV2627 PF00270 DEAD/DEAH box helicase XCV2627 PF08494 DEAD/H associated XCV2627 PF00271 Helicase conserved C-terminal domain XCV2630 PF04386 Stringent starvation protein B XCV2631 PF02798 Glutathione S-transferase, N-terminal domain XCV2631 PF00043 Glutathione S-transferase, C-terminal domain XCV2632 PF02167 Cytochrome C1 family XCV2633 PF00032 Cytochrome b(C-terminal)/b6/petD XCV2633 PF00033 Cytochrome b/b6/petB XCV2634 PF00355 Rieske [2Fe-2S] domain XCV2634 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal XCV2635 PF01464 Transglycosylase SLT domain XCV2638 PF00919 Uncharacterized protein family UPF0004 XCV2638 PF04055 Radical SAM superfamily XCV2638 PF01938 TRAM domain XCV2640 PF02562 PhoH-like protein XCV2642 PF02130 Uncharacterized protein family UPF0054 XCV2644 PF03471 Transporter associated domain XCV2644 PF00571 CBS domain XCV2647 PF00171 Aldehyde dehydrogenase family XCV2648 PF00528 Binding-protein-dependent transport system inner membrane component XCV2649 PF00528 Binding-protein-dependent transport system inner membrane component XCV2650 PF00005 ABC transporter XCV2650 PF08402 TOBE domain XCV2651 PF02321 Outer membrane efflux protein XCV2652 PF07690 Major Facilitator Superfamily XCV2653 PF13533 Biotin-lipoyl like XCV2654 PF13416 Bacterial extracellular solute-binding protein XCV2655 PF00202 Aminotransferase class-III XCV2656 PF00120 Glutamine synthetase, catalytic domain XCV2657 PF07722 Peptidase C26 XCV2658 PF00120 Glutamine synthetase, catalytic domain XCV2659 PF01266 FAD dependent oxidoreductase XCV2660 PF00072 Response regulator receiver domain XCV2660 PF00990 Diguanylate cyclase, GGDEF domain XCV2661 PF01814 Hemerythrin HHE cation binding domain XCV2662 PF07690 Major Facilitator Superfamily XCV2662 PF00083 Sugar (and other) transporter XCV2664 PF00384 Molybdopterin oxidoreductase XCV2665 PF02634 FdhD/NarQ family XCV2666 PF07690 Major Facilitator Superfamily XCV2668 PF00202 Aminotransferase class-III XCV2670 PF04286 Protein of unknown function (DUF445) XCV2671 PF00512 His Kinase A (phospho-acceptor) domain XCV2671 PF01627 Hpt domain XCV2671 PF00072 Response regulator receiver domain XCV2671 PF00672 HAMP domain XCV2671 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XCV2671 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV2672 PF00072 Response regulator receiver domain XCV2673 PF07690 Major Facilitator Superfamily XCV2674 PF05088 Bacterial NAD-glutamate dehydrogenase XCV2676 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCV2676 PF00529 HlyD membrane-fusion protein of T1SS XCV2677 PF00873 AcrB/AcrD/AcrF family XCV2678 PF00356 Bacterial regulatory proteins, lacI family XCV2679 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XCV2679 PF00381 PTS HPr component phosphorylation site XCV2679 PF02896 PEP-utilising enzyme, TIM barrel domain XCV2679 PF05524 PEP-utilising enzyme, N-terminal XCV2679 PF00391 PEP-utilising enzyme, mobile domain XCV2680 PF00294 pfkB family carbohydrate kinase XCV2681 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit XCV2689 PF13276 HTH-like domain XCV2689 PF13333 Integrase core domain XCV2689 PF00665 Integrase core domain XCV2692 PF07549 SecD/SecF GG Motif XCV2692 PF02355 Protein export membrane protein XCV2693 PF02355 Protein export membrane protein XCV2693 PF13721 SecD export protein N-terminal TM region XCV2693 PF07549 SecD/SecF GG Motif XCV2694 PF02699 Preprotein translocase subunit XCV2695 PF01702 Queuine tRNA-ribosyltransferase XCV2696 PF02547 Queuosine biosynthesis protein XCV2704 PF02927 Cellulase N-terminal ig-like domain XCV2704 PF00759 Glycosyl hydrolase family 9 XCV2707 PF00037 4Fe-4S binding domain XCV2709 PF01467 Cytidylyltransferase-like XCV2711 PF00183 Hsp90 protein XCV2711 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV2714 PF01609 Transposase DDE domain XCV2714 PF05598 Transposase domain (DUF772) XCV2716 PF05598 Transposase domain (DUF772) XCV2722 PF01527 Transposase XCV2723 PF13276 HTH-like domain XCV2723 PF13683 Integrase core domain XCV2725 PF00593 TonB dependent receptor XCV2725 PF07715 TonB-dependent Receptor Plug Domain XCV2728 PF04616 Glycosyl hydrolases family 43 XCV2729 PF07532 Bacterial Ig-like domain (group 4) XCV2730 PF00593 TonB dependent receptor XCV2730 PF07715 TonB-dependent Receptor Plug Domain XCV2734 PF09286 Pro-kumamolisin, activation domain XCV2734 PF00082 Subtilase family XCV2739 PF13520 Amino acid permease XCV2742 PF00557 Metallopeptidase family M24 XCV2742 PF01321 Creatinase/Prolidase N-terminal domain XCV2743 PF00171 Aldehyde dehydrogenase family XCV2744 PF00701 Dihydrodipicolinate synthetase family XCV2745 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCV2745 PF04324 BFD-like [2Fe-2S] binding domain XCV2747 PF01266 FAD dependent oxidoreductase XCV2748 PF05544 Proline racemase XCV2750 PF02881 SRP54-type protein, helical bundle domain XCV2750 PF00448 SRP54-type protein, GTPase domain XCV2752 PF00730 HhH-GPD superfamily base excision DNA repair protein XCV2752 PF14815 NUDIX domain XCV2752 PF00633 Helix-hairpin-helix motif XCV2752 PF10576 Iron-sulfur binding domain of endonuclease III XCV2753 PF04362 Bacterial Fe(2+) trafficking XCV2754 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV2754 PF00072 Response regulator receiver domain XCV2754 PF13426 PAS domain XCV2760 PF08212 Lipocalin-like domain XCV2762 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCV2762 PF12806 Acetyl-CoA dehydrogenase C-terminal like XCV2762 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCV2762 PF02770 Acyl-CoA dehydrogenase, middle domain XCV2764 PF02780 Transketolase, C-terminal domain XCV2764 PF02779 Transketolase, pyrimidine binding domain XCV2764 PF13292 1-deoxy-D-xylulose-5-phosphate synthase XCV2768 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XCV2769 PF16123 Hydroxyacylglutathione hydrolase C-terminus XCV2769 PF00753 Metallo-beta-lactamase superfamily XCV2770 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XCV2770 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XCV2772 PF13683 Integrase core domain XCV2772 PF13276 HTH-like domain XCV2773 PF01527 Transposase XCV2776 PF03808 Glycosyl transferase WecB/TagA/CpsF family XCV2779 PF14667 Polysaccharide biosynthesis C-terminal domain XCV2781 PF00534 Glycosyl transferases group 1 XCV2781 PF13439 Glycosyltransferase Family 4 XCV2785 PF02397 Bacterial sugar transferase XCV2788 PF13411 MerR HTH family regulatory protein XCV2789 PF00216 Bacterial DNA-binding protein XCV2790 PF01588 Putative tRNA binding domain XCV2790 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain XCV2790 PF03147 Ferredoxin-fold anticodon binding domain XCV2790 PF03484 tRNA synthetase B5 domain XCV2790 PF03483 B3/4 domain XCV2791 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain XCV2791 PF01409 tRNA synthetases class II core domain (F) XCV2792 PF00453 Ribosomal protein L20 XCV2793 PF01632 Ribosomal protein L35 XCV2794 PF00707 Translation initiation factor IF-3, C-terminal domain XCV2794 PF05198 Translation initiation factor IF-3, N-terminal domain XCV2795 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XCV2795 PF02824 TGS domain XCV2795 PF03129 Anticodon binding domain XCV2795 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XCV2796 PF00356 Bacterial regulatory proteins, lacI family XCV2797 PF00128 Alpha amylase, catalytic domain XCV2797 PF00686 Starch binding domain XCV2798 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 XCV2800 PF14508 Glycosyl-hydrolase 97 N-terminal XCV2800 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation XCV2800 PF10566 Glycoside hydrolase 97 XCV2803 PF00128 Alpha amylase, catalytic domain XCV2805 PF01527 Transposase XCV2806 PF13276 HTH-like domain XCV2806 PF13683 Integrase core domain XCV2810 PF02534 Type IV secretory system Conjugative DNA transfer XCV2812 PF17757 UvrB interaction domain XCV2812 PF04851 Type III restriction enzyme, res subunit XCV2812 PF12344 Ultra-violet resistance protein B XCV2812 PF02151 UvrB/uvrC motif XCV2812 PF00271 Helicase conserved C-terminal domain XCV2815 PF05567 Neisseria PilC beta-propeller domain XCV2816 PF13683 Integrase core domain XCV2816 PF13276 HTH-like domain XCV2817 PF01527 Transposase XCV2821 PF00114 Pilin (bacterial filament) XCV2821 PF07963 Prokaryotic N-terminal methylation motif XCV2822 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases XCV2822 PF03641 Possible lysine decarboxylase XCV2822 PF11892 Domain of unknown function (DUF3412) XCV2823 PF00593 TonB dependent receptor XCV2824 PF01914 MarC family integral membrane protein XCV2826 PF00462 Glutaredoxin XCV2827 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XCV2827 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XCV2828 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain XCV2828 PF02222 ATP-grasp domain XCV2829 PF00731 AIR carboxylase XCV2831 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain XCV2831 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain XCV2833 PF03725 3' exoribonuclease family, domain 2 XCV2833 PF01138 3' exoribonuclease family, domain 1 XCV2833 PF00575 S1 RNA binding domain XCV2833 PF00013 KH domain XCV2833 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain XCV2834 PF00312 Ribosomal protein S15 XCV2835 PF16198 tRNA pseudouridylate synthase B C-terminal domain XCV2835 PF09157 Pseudouridine synthase II TruB, C-terminal XCV2835 PF01509 TruB family pseudouridylate synthase (N terminal domain) XCV2836 PF02033 Ribosome-binding factor A XCV2837 PF11987 Translation-initiation factor 2 XCV2837 PF00009 Elongation factor Tu GTP binding domain XCV2837 PF08364 Bacterial translation initiation factor IF-2 associated region XCV2837 PF04760 Translation initiation factor IF-2, N-terminal region XCV2838 PF00575 S1 RNA binding domain XCV2838 PF13184 NusA-like KH domain XCV2838 PF08529 NusA N-terminal domain XCV2839 PF02576 RimP N-terminal domain XCV2839 PF17384 RimP C-terminal SH3 domain XCV2840 PF00361 Proton-conducting membrane transporter XCV2841 PF00361 Proton-conducting membrane transporter XCV2841 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus XCV2842 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XCV2842 PF00361 Proton-conducting membrane transporter XCV2843 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XCV2844 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 XCV2845 PF12838 4Fe-4S dicluster domain XCV2846 PF00146 NADH dehydrogenase XCV2847 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal XCV2847 PF00384 Molybdopterin oxidoreductase XCV2847 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XCV2848 PF10531 SLBB domain XCV2848 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region XCV2848 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit XCV2850 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit XCV2851 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit XCV2852 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit XCV2853 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 XCV2855 PF00121 Triosephosphate isomerase XCV2856 PF00106 short chain dehydrogenase XCV2860 PF00990 Diguanylate cyclase, GGDEF domain XCV2860 PF00563 EAL domain XCV2860 PF03707 Bacterial signalling protein N terminal repeat XCV2863 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XCV2863 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XCV2863 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XCV2863 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XCV2864 PF17848 Acetyl-coA carboxylase zinc finger domain XCV2864 PF01039 Carboxyl transferase domain XCV2865 PF00290 Tryptophan synthase alpha chain XCV2866 PF13276 HTH-like domain XCV2866 PF13333 Integrase core domain XCV2866 PF00665 Integrase core domain XCV2869 PF00291 Pyridoxal-phosphate dependent enzyme XCV2870 PF03466 LysR substrate binding domain XCV2870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV2871 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase XCV2872 PF01416 tRNA pseudouridine synthase XCV2875 PF02774 Semialdehyde dehydrogenase, dimerisation domain XCV2875 PF01118 Semialdehyde dehydrogenase, NAD binding domain XCV2876 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XCV2876 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XCV2877 PF01264 Chorismate synthase XCV2878 PF05175 Methyltransferase small domain XCV2879 PF02630 SCO1/SenC XCV2880 PF02666 Phosphatidylserine decarboxylase XCV2882 PF05872 Bacterial protein of unknown function (DUF853) XCV2883 PF00293 NUDIX domain XCV2886 PF03449 Transcription elongation factor, N-terminal XCV2886 PF01272 Transcription elongation factor, GreA/GreB, C-term XCV2887 PF04055 Radical SAM superfamily XCV2887 PF00919 Uncharacterized protein family UPF0004 XCV2887 PF18693 TRAM domain XCV2888 PF01738 Dienelactone hydrolase family XCV2892 PF00692 dUTPase XCV2893 PF10609 NUBPL iron-transfer P-loop NTPase XCV2894 PF00593 TonB dependent receptor XCV2894 PF07715 TonB-dependent Receptor Plug Domain XCV2898 PF05649 Peptidase family M13 XCV2898 PF01431 Peptidase family M13 XCV2899 PF01431 Peptidase family M13 XCV2899 PF05649 Peptidase family M13 XCV2903 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XCV2903 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCV2904 PF01266 FAD dependent oxidoreductase XCV2905 PF04235 Protein of unknown function (DUF418) XCV2906 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCV2907 PF00877 NlpC/P60 family XCV2908 PF00877 NlpC/P60 family XCV2911 PF13649 Methyltransferase domain XCV2912 PF00375 Sodium:dicarboxylate symporter family XCV2913 PF00245 Alkaline phosphatase XCV2914 PF01171 PP-loop family XCV2914 PF09179 TilS substrate binding domain XCV2914 PF11734 TilS substrate C-terminal domain XCV2915 PF02609 Exonuclease VII small subunit XCV2916 PF00348 Polyprenyl synthetase XCV2918 PF14521 Lysine-specific metallo-endopeptidase XCV2920 PF01523 Putative modulator of DNA gyrase XCV2921 PF04751 Protein of unknown function (DUF615) XCV2923 PF01523 Putative modulator of DNA gyrase XCV2926 PF13116 Protein of unknown function XCV2926 PF13502 AsmA-like C-terminal region XCV2927 PF00575 S1 RNA binding domain XCV2927 PF10150 Ribonuclease E/G family XCV2928 PF02545 Maf-like protein XCV2929 PF04402 Protein of unknown function (DUF541) XCV2931 PF02590 Predicted SPOUT methyltransferase XCV2934 PF01467 Cytidylyltransferase-like XCV2938 PF13603 Leucyl-tRNA synthetase, Domain 2 XCV2938 PF08264 Anticodon-binding domain of tRNA XCV2938 PF00133 tRNA synthetases class I (I, L, M and V) XCV2940 PF00085 Thioredoxin XCV2945 PF04070 Domain of unknown function (DUF378) XCV2946 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XCV2948 PF03466 LysR substrate binding domain XCV2948 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV2949 PF01022 Bacterial regulatory protein, arsR family XCV2956 PF00005 ABC transporter XCV2956 PF00664 ABC transporter transmembrane region XCV2960 PF00873 AcrB/AcrD/AcrF family XCV2963 PF02321 Outer membrane efflux protein XCV2964 PF00486 Transcriptional regulatory protein, C terminal XCV2964 PF00072 Response regulator receiver domain XCV2965 PF00512 His Kinase A (phospho-acceptor) domain XCV2965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV2965 PF00672 HAMP domain XCV2966 PF00999 Sodium/hydrogen exchanger family XCV2967 PF00144 Beta-lactamase XCV2968 PF03737 Aldolase/RraA XCV2971 PF08448 PAS fold XCV2971 PF00990 Diguanylate cyclase, GGDEF domain XCV2972 PF01479 S4 domain XCV2972 PF00849 RNA pseudouridylate synthase XCV2973 PF00990 Diguanylate cyclase, GGDEF domain XCV2973 PF08448 PAS fold XCV2973 PF00563 EAL domain XCV2974 PF03880 DbpA RNA binding domain XCV2974 PF00271 Helicase conserved C-terminal domain XCV2974 PF00270 DEAD/DEAH box helicase XCV2975 PF04539 Sigma-70 region 3 XCV2975 PF04545 Sigma-70, region 4 XCV2975 PF04542 Sigma-70 region 2 XCV2984 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain XCV2984 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain XCV2986 PF00654 Voltage gated chloride channel XCV2989 PF00593 TonB dependent receptor XCV2989 PF07715 TonB-dependent Receptor Plug Domain XCV2993 PF00082 Subtilase family XCV2993 PF01483 Proprotein convertase P-domain XCV2995 PF00248 Aldo/keto reductase family XCV2996 PF07690 Major Facilitator Superfamily XCV2997 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV2997 PF03466 LysR substrate binding domain XCV2998 PF12833 Helix-turn-helix domain XCV2998 PF06719 AraC-type transcriptional regulator N-terminus XCV3000 PF03466 LysR substrate binding domain XCV3000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV3001 PF16859 Tetracyclin repressor-like, C-terminal domain XCV3001 PF00440 Bacterial regulatory proteins, tetR family XCV3002 PF02321 Outer membrane efflux protein XCV3003 PF00873 AcrB/AcrD/AcrF family XCV3004 PF00529 HlyD membrane-fusion protein of T1SS XCV3004 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCV3006 PF01475 Ferric uptake regulator family XCV3007 PF00749 tRNA synthetases class I (E and Q), catalytic domain XCV3012 PF06123 Inner membrane protein CreD XCV3014 PF00512 His Kinase A (phospho-acceptor) domain XCV3014 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV3014 PF00672 HAMP domain XCV3015 PF00486 Transcriptional regulatory protein, C terminal XCV3015 PF00072 Response regulator receiver domain XCV3016 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ XCV3018 PF03461 TRCF domain XCV3018 PF00270 DEAD/DEAH box helicase XCV3018 PF02559 CarD-like/TRCF domain XCV3018 PF00271 Helicase conserved C-terminal domain XCV3018 PF17757 UvrB interaction domain XCV3020 PF02895 Signal transducing histidine kinase, homodimeric domain XCV3020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV3020 PF01584 CheW-like domain XCV3020 PF01627 Hpt domain XCV3020 PF09078 CheY binding XCV3021 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV3021 PF00672 HAMP domain XCV3021 PF02203 Tar ligand binding domain homologue XCV3022 PF01584 CheW-like domain XCV3023 PF00563 EAL domain XCV3023 PF00990 Diguanylate cyclase, GGDEF domain XCV3023 PF13426 PAS domain XCV3024 PF03705 CheR methyltransferase, all-alpha domain XCV3024 PF01739 CheR methyltransferase, SAM binding domain XCV3025 PF01339 CheB methylesterase XCV3025 PF00072 Response regulator receiver domain XCV3026 PF13091 PLD-like domain XCV3027 PF05649 Peptidase family M13 XCV3027 PF01431 Peptidase family M13 XCV3029 PF00300 Histidine phosphatase superfamily (branch 1) XCV3030 PF04493 Endonuclease V XCV3032 PF02678 Pirin XCV3032 PF05726 Pirin C-terminal cupin domain XCV3035 PF05726 Pirin C-terminal cupin domain XCV3035 PF02678 Pirin XCV3036 PF13722 5TM C-terminal transporter carbon starvation CstA XCV3036 PF02554 Carbon starvation protein CstA XCV3043 PF02625 XdhC and CoxI family XCV3043 PF13478 XdhC Rossmann domain XCV3044 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XCV3044 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XCV3045 PF00941 FAD binding domain in molybdopterin dehydrogenase XCV3045 PF03450 CO dehydrogenase flavoprotein C-terminal domain XCV3046 PF00111 2Fe-2S iron-sulfur cluster binding domain XCV3046 PF01799 [2Fe-2S] binding domain XCV3046 PF10518 TAT (twin-arginine translocation) pathway signal sequence XCV3047 PF00698 Acyl transferase domain XCV3047 PF00107 Zinc-binding dehydrogenase XCV3047 PF16197 Ketoacyl-synthetase C-terminal extension XCV3047 PF00109 Beta-ketoacyl synthase, N-terminal domain XCV3047 PF08659 KR domain XCV3047 PF00550 Phosphopantetheine attachment site XCV3047 PF14765 Polyketide synthase dehydratase XCV3047 PF08240 Alcohol dehydrogenase GroES-like domain XCV3047 PF02801 Beta-ketoacyl synthase, C-terminal domain XCV3048 PF00990 Diguanylate cyclase, GGDEF domain XCV3048 PF00360 Phytochrome region XCV3048 PF01590 GAF domain XCV3048 PF00563 EAL domain XCV3049 PF00436 Single-strand binding protein family XCV3050 PF00348 Polyprenyl synthetase XCV3053 PF08245 Mur ligase middle domain XCV3053 PF02875 Mur ligase family, glutamate ligase domain XCV3056 PF00696 Amino acid kinase family XCV3056 PF01842 ACT domain XCV3057 PF02567 Phenazine biosynthesis-like protein XCV3058 PF02567 Phenazine biosynthesis-like protein XCV3060 PF02566 OsmC-like protein XCV3061 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XCV3061 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XCV3062 PF03652 Holliday junction resolvase XCV3063 PF02622 Uncharacterized ACR, COG1678 XCV3064 PF00117 Glutamine amidotransferase class-I XCV3064 PF03352 Methyladenine glycosylase XCV3064 PF13673 Acetyltransferase (GNAT) domain XCV3064 PF13302 Acetyltransferase (GNAT) domain XCV3064 PF00958 GMP synthase C terminal domain XCV3067 PF00437 Type II/IV secretion system protein XCV3068 PF00437 Type II/IV secretion system protein XCV3069 PF01168 Alanine racemase, N-terminal domain XCV3070 PF03807 NADP oxidoreductase coenzyme F420-dependent XCV3070 PF14748 Pyrroline-5-carboxylate reductase dimerisation XCV3072 PF01551 Peptidase family M23 XCV3076 PF01965 DJ-1/PfpI family XCV3078 PF02082 Transcriptional regulator XCV3079 PF01458 Uncharacterized protein family (UPF0051) XCV3080 PF00005 ABC transporter XCV3081 PF01458 Uncharacterized protein family (UPF0051) XCV3082 PF00266 Aminotransferase class-V XCV3084 PF00355 Rieske [2Fe-2S] domain XCV3085 PF00593 TonB dependent receptor XCV3085 PF07715 TonB-dependent Receptor Plug Domain XCV3086 PF13640 2OG-Fe(II) oxygenase superfamily XCV3086 PF18331 PKHD-type hydroxylase C-terminal domain XCV3091 PF02424 ApbE family XCV3092 PF00258 Flavodoxin XCV3092 PF00667 FAD binding domain XCV3092 PF00175 Oxidoreductase NAD-binding domain XCV3099 PF01636 Phosphotransferase enzyme family XCV3100 PF00483 Nucleotidyl transferase XCV3101 PF00308 Bacterial dnaA protein XCV3102 PF01594 AI-2E family transporter XCV3104 PF00586 AIR synthase related protein, N-terminal domain XCV3104 PF02769 AIR synthase related protein, C-terminal domain XCV3106 PF00551 Formyl transferase XCV3110 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XCV3112 PF01722 BolA-like protein XCV3113 PF01380 SIS domain XCV3113 PF00571 CBS domain XCV3116 PF03968 OstA-like protein XCV3117 PF00005 ABC transporter XCV3118 PF00309 Sigma-54 factor, Activator interacting domain (AID) XCV3118 PF04963 Sigma-54 factor, core binding domain XCV3118 PF04552 Sigma-54, DNA binding domain XCV3119 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein XCV3120 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XCV3121 PF07475 HPr Serine kinase C-terminal domain XCV3121 PF02603 HPr Serine kinase N terminus XCV3122 PF03668 P-loop ATPase protein family XCV3124 PF00381 PTS HPr component phosphorylation site XCV3125 PF05524 PEP-utilising enzyme, N-terminal XCV3125 PF02896 PEP-utilising enzyme, TIM barrel domain XCV3125 PF00391 PEP-utilising enzyme, mobile domain XCV3126 PF01769 Divalent cation transporter XCV3126 PF03448 MgtE intracellular N domain XCV3126 PF00571 CBS domain XCV3127 PF00756 Putative esterase XCV3128 PF02322 Cytochrome bd terminal oxidase subunit II XCV3129 PF01654 Cytochrome bd terminal oxidase subunit I XCV3131 PF00324 Amino acid permease XCV3132 PF00544 Pectate lyase XCV3134 PF00561 alpha/beta hydrolase fold XCV3135 PF00196 Bacterial regulatory proteins, luxR family XCV3136 PF00324 Amino acid permease XCV3143 PF12706 Beta-lactamase superfamily domain XCV3149 PF00376 MerR family regulatory protein XCV3149 PF09278 MerR, DNA binding XCV3150 PF07690 Major Facilitator Superfamily XCV3152 PF03738 Glutathionylspermidine synthase preATP-grasp XCV3157 PF04012 PspA/IM30 family XCV3159 PF01243 Pyridoxamine 5'-phosphate oxidase XCV3159 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region XCV3160 PF01202 Shikimate kinase XCV3161 PF01761 3-dehydroquinate synthase XCV3163 PF01208 Uroporphyrinogen decarboxylase (URO-D) XCV3164 PF07690 Major Facilitator Superfamily XCV3165 PF17149 Periplasmic sensor domain found in signal transduction proteins XCV3165 PF00672 HAMP domain XCV3165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV3165 PF00512 His Kinase A (phospho-acceptor) domain XCV3165 PF01627 Hpt domain XCV3165 PF00072 Response regulator receiver domain XCV3166 PF00672 HAMP domain XCV3166 PF01627 Hpt domain XCV3166 PF00072 Response regulator receiver domain XCV3166 PF00512 His Kinase A (phospho-acceptor) domain XCV3166 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV3166 PF17149 Periplasmic sensor domain found in signal transduction proteins XCV3167 PF17149 Periplasmic sensor domain found in signal transduction proteins XCV3167 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV3167 PF00672 HAMP domain XCV3167 PF00072 Response regulator receiver domain XCV3167 PF01627 Hpt domain XCV3167 PF00512 His Kinase A (phospho-acceptor) domain XCV3168 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV3168 PF01627 Hpt domain XCV3168 PF00512 His Kinase A (phospho-acceptor) domain XCV3168 PF00072 Response regulator receiver domain XCV3169 PF04264 YceI-like domain XCV3173 PF03315 Serine dehydratase beta chain XCV3173 PF03313 Serine dehydratase alpha chain XCV3174 PF00561 alpha/beta hydrolase fold XCV3175 PF00742 Homoserine dehydrogenase XCV3175 PF03447 Homoserine dehydrogenase, NAD binding domain XCV3175 PF00696 Amino acid kinase family XCV3176 PF01053 Cys/Met metabolism PLP-dependent enzyme XCV3177 PF00561 alpha/beta hydrolase fold XCV3178 PF01551 Peptidase family M23 XCV3178 PF08525 Opacity-associated protein A N-terminal motif XCV3178 PF01476 LysM domain XCV3179 PF16658 Class II release factor RF3, C-terminal domain XCV3179 PF00009 Elongation factor Tu GTP binding domain XCV3180 PF03006 Haemolysin-III related XCV3181 PF05170 AsmA family XCV3182 PF00478 IMP dehydrogenase / GMP reductase domain XCV3182 PF00571 CBS domain XCV3183 PF00535 Glycosyl transferase family 2 XCV3184 PF00912 Transglycosylase XCV3185 PF01430 Hsp33 protein XCV3187 PF07715 TonB-dependent Receptor Plug Domain XCV3187 PF00593 TonB dependent receptor XCV3188 PF00440 Bacterial regulatory proteins, tetR family XCV3189 PF00561 alpha/beta hydrolase fold XCV3190 PF09317 Domain of unknown function (DUF1974) XCV3190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCV3190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCV3195 PF01597 Glycine cleavage H-protein XCV3196 PF08669 Glycine cleavage T-protein C-terminal barrel domain XCV3196 PF01571 Aminomethyltransferase folate-binding domain XCV3197 PF01145 SPFH domain / Band 7 family XCV3197 PF16200 C-terminal region of band_7 XCV3198 PF02694 Uncharacterised BCR, YnfA/UPF0060 family XCV3199 PF03819 MazG nucleotide pyrophosphohydrolase domain XCV3200 PF00459 Inositol monophosphatase family XCV3201 PF00293 NUDIX domain XCV3202 PF00202 Aminotransferase class-III XCV3203 PF04452 RNA methyltransferase XCV3204 PF02685 Glucokinase XCV3208 PF01476 LysM domain XCV3208 PF00704 Glycosyl hydrolases family 18 XCV3209 PF02838 Glycosyl hydrolase family 20, domain 2 XCV3209 PF07691 PA14 domain XCV3209 PF00728 Glycosyl hydrolase family 20, catalytic domain XCV3211 PF14310 Fibronectin type III-like domain XCV3211 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCV3211 PF07691 PA14 domain XCV3211 PF00933 Glycosyl hydrolase family 3 N terminal domain XCV3213 PF17678 Glycosyl hydrolase family 92 N-terminal domain XCV3213 PF07971 Glycosyl hydrolase family 92 XCV3214 PF01301 Glycosyl hydrolases family 35 XCV3221 PF03932 CutC family XCV3222 PF01112 Asparaginase XCV3223 PF00092 von Willebrand factor type A domain XCV3223 PF12450 von Willebrand factor XCV3223 PF12034 Domain of unknown function (DUF3520) XCV3224 PF08281 Sigma-70, region 4 XCV3224 PF04542 Sigma-70 region 2 XCV3226 PF13302 Acetyltransferase (GNAT) domain XCV3229 PF01627 Hpt domain XCV3229 PF00072 Response regulator receiver domain XCV3229 PF01584 CheW-like domain XCV3229 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV3230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV3230 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term XCV3231 PF01584 CheW-like domain XCV3232 PF00072 Response regulator receiver domain XCV3233 PF00072 Response regulator receiver domain XCV3234 PF02951 Prokaryotic glutathione synthetase, N-terminal domain XCV3234 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain XCV3236 PF03747 ADP-ribosylglycohydrolase XCV3237 PF03747 ADP-ribosylglycohydrolase XCV3238 PF00814 Glycoprotease family XCV3239 PF04851 Type III restriction enzyme, res subunit XCV3239 PF13307 Helicase C-terminal domain XCV3241 PF14814 Bifunctional transglycosylase second domain XCV3241 PF00905 Penicillin binding protein transpeptidase domain XCV3241 PF00912 Transglycosylase XCV3242 PF00535 Glycosyl transferase family 2 XCV3244 PF02824 TGS domain XCV3244 PF04607 Region found in RelA / SpoT proteins XCV3244 PF13291 ACT domain XCV3245 PF12706 Beta-lactamase superfamily domain XCV3246 PF03070 TENA/THI-4/PQQC family XCV3247 PF05402 Coenzyme PQQ synthesis protein D (PqqD) XCV3248 PF13186 Iron-sulfur cluster-binding domain XCV3248 PF04055 Radical SAM superfamily XCV3251 PF02685 Glucokinase XCV3253 PF11898 Domain of unknown function (DUF3418) XCV3253 PF00271 Helicase conserved C-terminal domain XCV3253 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold XCV3253 PF04408 Helicase associated domain (HA2) XCV3253 PF00270 DEAD/DEAH box helicase XCV3254 PF00210 Ferritin-like domain XCV3255 PF16124 RecQ zinc-binding XCV3255 PF00570 HRDC domain XCV3255 PF00270 DEAD/DEAH box helicase XCV3255 PF09382 RQC domain XCV3255 PF00271 Helicase conserved C-terminal domain XCV3259 PF00849 RNA pseudouridylate synthase XCV3259 PF01479 S4 domain XCV3261 PF00672 HAMP domain XCV3261 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV3261 PF02203 Tar ligand binding domain homologue XCV3267 PF07536 HWE histidine kinase XCV3267 PF13426 PAS domain XCV3267 PF13581 Histidine kinase-like ATPase domain XCV3268 PF06508 Queuosine biosynthesis protein QueC XCV3269 PF04055 Radical SAM superfamily XCV3271 PF00691 OmpA family XCV3272 PF04052 TolB amino-terminal domain XCV3272 PF07676 WD40-like Beta Propeller Repeat XCV3274 PF02472 Biopolymer transport protein ExbD/TolR XCV3275 PF01618 MotA/TolQ/ExbB proton channel family XCV3276 PF03061 Thioesterase superfamily XCV3277 PF17864 RuvB AAA lid domain XCV3277 PF05496 Holliday junction DNA helicase RuvB P-loop domain XCV3277 PF05491 RuvB C-terminal winged helix domain XCV3279 PF02705 K+ potassium transporter XCV3280 PF07499 RuvA, C-terminal domain XCV3280 PF01330 RuvA N terminal domain XCV3281 PF02075 Crossover junction endodeoxyribonuclease RuvC XCV3282 PF01709 Transcriptional regulator XCV3286 PF02938 GAD domain XCV3286 PF00152 tRNA synthetases class II (D, K and N) XCV3286 PF01336 OB-fold nucleic acid binding domain XCV3289 PF07690 Major Facilitator Superfamily XCV3291 PF04185 Phosphoesterase family XCV3291 PF05506 Domain of unknown function (DUF756) XCV3292 PF13472 GDSL-like Lipase/Acylhydrolase family XCV3292 PF07859 alpha/beta hydrolase fold XCV3294 PF03466 LysR substrate binding domain XCV3294 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV3296 PF00005 ABC transporter XCV3296 PF12848 ABC transporter XCV3297 PF07715 TonB-dependent Receptor Plug Domain XCV3297 PF00593 TonB dependent receptor XCV3299 PF00593 TonB dependent receptor XCV3299 PF07715 TonB-dependent Receptor Plug Domain XCV3301 PF00593 TonB dependent receptor XCV3301 PF07715 TonB-dependent Receptor Plug Domain XCV3302 PF00067 Cytochrome P450 XCV3303 PF00999 Sodium/hydrogen exchanger family XCV3303 PF02254 TrkA-N domain XCV3304 PF02254 TrkA-N domain XCV3304 PF00999 Sodium/hydrogen exchanger family XCV3306 PF07715 TonB-dependent Receptor Plug Domain XCV3306 PF00593 TonB dependent receptor XCV3306 PF07660 Secretin and TonB N terminus short domain XCV3308 PF04183 IucA / IucC family XCV3308 PF06276 Ferric iron reductase FhuF-like transporter XCV3309 PF07690 Major Facilitator Superfamily XCV3311 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XCV3311 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain XCV3313 PF02654 Cobalamin-5-phosphate synthase XCV3315 PF02277 Phosphoribosyltransferase XCV3316 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase XCV3317 PF07685 CobB/CobQ-like glutamine amidotransferase domain XCV3317 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XCV3318 PF00155 Aminotransferase class I and II XCV3319 PF17113 Regulatory signalling modulator protein AmpE XCV3319 PF03186 CobD/Cbib protein XCV3320 PF12557 Cob(I)alamin adenosyltransferase N terminal XCV3320 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP XCV3323 PF07715 TonB-dependent Receptor Plug Domain XCV3323 PF00593 TonB dependent receptor XCV3324 PF00004 ATPase family associated with various cellular activities (AAA) XCV3324 PF07724 AAA domain (Cdc48 subfamily) XCV3324 PF17871 AAA lid domain XCV3324 PF02861 Clp amino terminal domain, pathogenicity island component XCV3324 PF10431 C-terminal, D2-small domain, of ClpB protein XCV3325 PF00005 ABC transporter XCV3326 PF01541 GIY-YIG catalytic domain XCV3333 PF00593 TonB dependent receptor XCV3333 PF07715 TonB-dependent Receptor Plug Domain XCV3334 PF02358 Trehalose-phosphatase XCV3335 PF00723 Glycosyl hydrolases family 15 XCV3336 PF00982 Glycosyltransferase family 20 XCV3337 PF01011 PQQ enzyme repeat XCV3338 PF02203 Tar ligand binding domain homologue XCV3338 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV3338 PF00672 HAMP domain XCV3339 PF04134 Protein of unknown function, DUF393 XCV3342 PF00849 RNA pseudouridylate synthase XCV3343 PF13525 Outer membrane lipoprotein XCV3345 PF02540 NAD synthase XCV3345 PF00795 Carbon-nitrogen hydrolase XCV3348 PF00549 CoA-ligase XCV3348 PF02629 CoA binding domain XCV3349 PF00549 CoA-ligase XCV3349 PF08442 ATP-grasp domain XCV3350 PF00512 His Kinase A (phospho-acceptor) domain XCV3350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV3351 PF00158 Sigma-54 interaction domain XCV3351 PF00072 Response regulator receiver domain XCV3351 PF02954 Bacterial regulatory protein, Fis family XCV3352 PF00437 Type II/IV secretion system protein XCV3352 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XCV3353 PF07963 Prokaryotic N-terminal methylation motif XCV3353 PF00114 Pilin (bacterial filament) XCV3354 PF00482 Type II secretion system (T2SS), protein F XCV3355 PF06750 Bacterial Peptidase A24 N-terminal domain XCV3355 PF01478 Type IV leader peptidase family XCV3356 PF01121 Dephospho-CoA kinase XCV3359 PF01527 Transposase XCV3360 PF13683 Integrase core domain XCV3360 PF13276 HTH-like domain XCV3362 PF01527 Transposase XCV3363 PF13683 Integrase core domain XCV3363 PF13276 HTH-like domain XCV3364 PF11808 Phosphate regulon sensor protein PhoR XCV3364 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV3364 PF00989 PAS fold XCV3364 PF00512 His Kinase A (phospho-acceptor) domain XCV3365 PF00486 Transcriptional regulatory protein, C terminal XCV3365 PF00072 Response regulator receiver domain XCV3367 PF08443 RimK-like ATP-grasp domain XCV3367 PF18030 RimK PreATP-grasp domain XCV3368 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCV3368 PF00128 Alpha amylase, catalytic domain XCV3383 PF13276 HTH-like domain XCV3383 PF00665 Integrase core domain XCV3383 PF13333 Integrase core domain XCV3386 PF01527 Transposase XCV3387 PF13683 Integrase core domain XCV3387 PF13276 HTH-like domain XCV3390 PF04610 TrbL/VirB6 plasmid conjugal transfer protein XCV3395 PF05598 Transposase domain (DUF772) XCV3395 PF01609 Transposase DDE domain XCV3398 PF13276 HTH-like domain XCV3398 PF00665 Integrase core domain XCV3398 PF13333 Integrase core domain XCV3400 PF05114 Protein of unknown function (DUF692) XCV3402 PF02666 Phosphatidylserine decarboxylase XCV3403 PF02666 Phosphatidylserine decarboxylase XCV3404 PF04002 RadC-like JAB domain XCV3409 PF00665 Integrase core domain XCV3409 PF13333 Integrase core domain XCV3409 PF13276 HTH-like domain XCV3411 PF01527 Transposase XCV3415 PF03797 Autotransporter beta-domain XCV3415 PF00657 GDSL-like Lipase/Acylhydrolase XCV3417 PF05690 Thiazole biosynthesis protein ThiG XCV3418 PF02390 Putative methyltransferase XCV3419 PF03600 Citrate transporter XCV3419 PF02080 TrkA-C domain XCV3423 PF01557 Fumarylacetoacetate (FAA) hydrolase family XCV3424 PF01741 Large-conductance mechanosensitive channel, MscL XCV3427 PF00356 Bacterial regulatory proteins, lacI family XCV3430 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain XCV3430 PF00703 Glycosyl hydrolases family 2 XCV3430 PF02837 Glycosyl hydrolases family 2, sugar binding domain XCV3431 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation XCV3431 PF14508 Glycosyl-hydrolase 97 N-terminal XCV3431 PF10566 Glycoside hydrolase 97 XCV3433 PF00135 Carboxylesterase family XCV3434 PF08032 RNA 2'-O ribose methyltransferase substrate binding XCV3434 PF00588 SpoU rRNA Methylase family XCV3437 PF11838 ERAP1-like C-terminal domain XCV3437 PF01433 Peptidase family M1 domain XCV3443 PF00873 AcrB/AcrD/AcrF family XCV3444 PF00529 HlyD membrane-fusion protein of T1SS XCV3444 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCV3445 PF00009 Elongation factor Tu GTP binding domain XCV3446 PF01507 Phosphoadenosine phosphosulfate reductase family XCV3447 PF00258 Flavodoxin XCV3447 PF00175 Oxidoreductase NAD-binding domain XCV3447 PF00667 FAD binding domain XCV3448 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XCV3448 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XCV3449 PF01507 Phosphoadenosine phosphosulfate reductase family XCV3453 PF01627 Hpt domain XCV3453 PF00512 His Kinase A (phospho-acceptor) domain XCV3453 PF00072 Response regulator receiver domain XCV3453 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV3457 PF03466 LysR substrate binding domain XCV3457 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV3458 PF14824 Sirohaem biosynthesis protein central XCV3458 PF10414 Sirohaem synthase dimerisation region XCV3458 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XCV3459 PF00291 Pyridoxal-phosphate dependent enzyme XCV3461 PF01661 Macro domain XCV3462 PF00274 Fructose-bisphosphate aldolase class-I XCV3463 PF02887 Pyruvate kinase, alpha/beta domain XCV3463 PF00224 Pyruvate kinase, barrel domain XCV3465 PF00162 Phosphoglycerate kinase XCV3469 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain XCV3469 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XCV3471 PF03922 OmpW family XCV3472 PF03922 OmpW family XCV3474 PF00753 Metallo-beta-lactamase superfamily XCV3474 PF04273 Putative phosphatase (DUF442) XCV3476 PF00528 Binding-protein-dependent transport system inner membrane component XCV3477 PF03459 TOBE domain XCV3477 PF00005 ABC transporter XCV3486 PF01476 LysM domain XCV3486 PF03734 L,D-transpeptidase catalytic domain XCV3487 PF04225 Opacity-associated protein A LysM-like domain XCV3487 PF01551 Peptidase family M23 XCV3489 PF07715 TonB-dependent Receptor Plug Domain XCV3489 PF00593 TonB dependent receptor XCV3490 PF02780 Transketolase, C-terminal domain XCV3490 PF00456 Transketolase, thiamine diphosphate binding domain XCV3490 PF02779 Transketolase, pyrimidine binding domain XCV3491 PF00375 Sodium:dicarboxylate symporter family XCV3493 PF07584 Aerotolerance regulator N-terminal XCV3493 PF00092 von Willebrand factor type A domain XCV3496 PF17863 AAA lid domain XCV3496 PF07726 ATPase family associated with various cellular activities (AAA) XCV3497 PF00263 Bacterial type II and III secretion system protein XCV3497 PF03958 Bacterial type II/III secretion system short domain XCV3497 PF07660 Secretin and TonB N terminus short domain XCV3497 PF11741 AMIN domain XCV3502 PF17092 Penicillin-binding protein OB-like domain XCV3502 PF00912 Transglycosylase XCV3502 PF00905 Penicillin binding protein transpeptidase domain XCV3504 PF00285 Citrate synthase, C-terminal domain XCV3506 PF01197 Ribosomal protein L31 XCV3507 PF01156 Inosine-uridine preferring nucleoside hydrolase XCV3508 PF17191 RecG wedge domain XCV3508 PF00270 DEAD/DEAH box helicase XCV3508 PF00271 Helicase conserved C-terminal domain XCV3509 PF01042 Endoribonuclease L-PSP XCV3510 PF13291 ACT domain XCV3510 PF02824 TGS domain XCV3510 PF04607 Region found in RelA / SpoT proteins XCV3511 PF01192 RNA polymerase Rpb6 XCV3512 PF00625 Guanylate kinase XCV3513 PF08340 Domain of unknown function (DUF1732) XCV3513 PF03755 YicC-like family, N-terminal region XCV3514 PF01138 3' exoribonuclease family, domain 1 XCV3514 PF03725 3' exoribonuclease family, domain 2 XCV3516 PF01725 Ham1 family XCV3517 PF04055 Radical SAM superfamily XCV3517 PF06969 HemN C-terminal domain XCV3520 PF00557 Metallopeptidase family M24 XCV3522 PF00557 Metallopeptidase family M24 XCV3522 PF05195 Aminopeptidase P, N-terminal domain XCV3523 PF03695 Uncharacterised protein family (UPF0149) XCV3525 PF05164 Cell division protein ZapA XCV3526 PF01812 5-formyltetrahydrofolate cyclo-ligase family XCV3528 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) XCV3530 PF13369 Transglutaminase-like superfamily XCV3531 PF00301 Rubredoxin XCV3532 PF02581 Thiamine monophosphate synthase XCV3535 PF00202 Aminotransferase class-III XCV3536 PF17874 MalT-like TPR region XCV3536 PF00196 Bacterial regulatory proteins, luxR family XCV3537 PF00127 Copper binding proteins, plastocyanin/azurin family XCV3538 PF00155 Aminotransferase class I and II XCV3540 PF00034 Cytochrome c XCV3540 PF13442 Cytochrome C oxidase, cbb3-type, subunit III XCV3541 PF01593 Flavin containing amine oxidoreductase XCV3544 PF00202 Aminotransferase class-III XCV3545 PF00027 Cyclic nucleotide-binding domain XCV3545 PF00520 Ion transport protein XCV3548 PF01569 PAP2 superfamily XCV3549 PF01062 Bestrophin, RFP-TM, chloride channel XCV3552 PF01225 Mur ligase family, catalytic domain XCV3552 PF08245 Mur ligase middle domain XCV3552 PF02875 Mur ligase family, glutamate ligase domain XCV3554 PF00365 Phosphofructokinase XCV3558 PF04610 TrbL/VirB6 plasmid conjugal transfer protein XCV3561 PF04610 TrbL/VirB6 plasmid conjugal transfer protein XCV3564 PF04610 TrbL/VirB6 plasmid conjugal transfer protein XCV3568 PF03030 Inorganic H+ pyrophosphatase XCV3570 PF00719 Inorganic pyrophosphatase XCV3572 PF00593 TonB dependent receptor XCV3572 PF07715 TonB-dependent Receptor Plug Domain XCV3573 PF12833 Helix-turn-helix domain XCV3574 PF18500 CadC C-terminal domain 1 XCV3574 PF00486 Transcriptional regulatory protein, C terminal XCV3575 PF13667 ThiC-associated domain XCV3575 PF01964 Radical SAM ThiC family XCV3576 PF07715 TonB-dependent Receptor Plug Domain XCV3576 PF00593 TonB dependent receptor XCV3577 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCV3577 PF00672 HAMP domain XCV3577 PF02203 Tar ligand binding domain homologue XCV3579 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain XCV3579 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain XCV3580 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XCV3580 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XCV3580 PF00205 Thiamine pyrophosphate enzyme, central domain XCV3582 PF00291 Pyridoxal-phosphate dependent enzyme XCV3583 PF00682 HMGL-like XCV3583 PF08502 LeuA allosteric (dimerisation) domain XCV3584 PF00180 Isocitrate/isopropylmalate dehydrogenase XCV3585 PF00694 Aconitase C-terminal domain XCV3586 PF00330 Aconitase family (aconitate hydratase) XCV3587 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV3588 PF17151 Periplasmic sensor domain XCV3588 PF00990 Diguanylate cyclase, GGDEF domain XCV3591 PF02321 Outer membrane efflux protein XCV3592 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) XCV3593 PF03279 Bacterial lipid A biosynthesis acyltransferase XCV3598 PF03949 Malic enzyme, NAD binding domain XCV3598 PF00390 Malic enzyme, N-terminal domain XCV3598 PF01515 Phosphate acetyl/butaryl transferase XCV3599 PF00375 Sodium:dicarboxylate symporter family XCV3601 PF02743 Cache domain XCV3601 PF00512 His Kinase A (phospho-acceptor) domain XCV3601 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV3602 PF07690 Major Facilitator Superfamily XCV3604 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV3604 PF03466 LysR substrate binding domain XCV3605 PF00248 Aldo/keto reductase family XCV3608 PF00196 Bacterial regulatory proteins, luxR family XCV3608 PF00072 Response regulator receiver domain XCV3610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV3610 PF08521 Two-component sensor kinase N-terminal XCV3610 PF00512 His Kinase A (phospho-acceptor) domain XCV3611 PF00486 Transcriptional regulatory protein, C terminal XCV3611 PF00072 Response regulator receiver domain XCV3613 PF03600 Citrate transporter XCV3614 PF00106 short chain dehydrogenase XCV3615 PF00356 Bacterial regulatory proteins, lacI family XCV3618 PF00128 Alpha amylase, catalytic domain XCV3621 PF03193 RsgA GTPase XCV3625 PF01522 Polysaccharide deacetylase XCV3626 PF00462 Glutaredoxin XCV3629 PF01979 Amidohydrolase family XCV3630 PF01979 Amidohydrolase family XCV3635 PF02645 Uncharacterised protein, DegV family COG1307 XCV3636 PF01327 Polypeptide deformylase XCV3637 PF03960 ArsC family XCV3640 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) XCV3641 PF01270 Glycosyl hydrolases family 8 XCV3642 PF03170 Bacterial cellulose synthase subunit XCV3643 PF00535 Glycosyl transferase family 2 XCV3643 PF03552 Cellulose synthase XCV3643 PF07238 PilZ domain XCV3644 PF07238 PilZ domain XCV3644 PF00535 Glycosyl transferase family 2 XCV3644 PF03552 Cellulose synthase XCV3647 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain XCV3647 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family XCV3654 PF00593 TonB dependent receptor XCV3654 PF07715 TonB-dependent Receptor Plug Domain XCV3656 PF07702 UTRA domain XCV3656 PF00392 Bacterial regulatory proteins, gntR family XCV3658 PF03958 Bacterial type II/III secretion system short domain XCV3658 PF00263 Bacterial type II and III secretion system protein XCV3660 PF10741 Type II secretion system (T2SS), protein M subtype b XCV3661 PF05137 Fimbrial assembly protein (PilN) XCV3662 PF03934 Type II secretion system (T2SS), protein K XCV3664 PF07963 Prokaryotic N-terminal methylation motif XCV3665 PF12019 Type II transport protein GspH XCV3666 PF08334 Type II secretion system (T2SS), protein G XCV3667 PF00482 Type II secretion system (T2SS), protein F XCV3668 PF00437 Type II/IV secretion system protein XCV3668 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XCV3669 PF00082 Subtilase family XCV3669 PF04151 Bacterial pre-peptidase C-terminal domain XCV3670 PF13018 Extended Signal Peptide of Type V secretion system XCV3670 PF05662 Coiled stalk of trimeric autotransporter adhesin XCV3670 PF03895 YadA-like membrane anchor domain XCV3670 PF05658 Head domain of trimeric autotransporter adhesin XCV3671 PF04151 Bacterial pre-peptidase C-terminal domain XCV3671 PF00082 Subtilase family XCV3672 PF05662 Coiled stalk of trimeric autotransporter adhesin XCV3672 PF03895 YadA-like membrane anchor domain XCV3672 PF13018 Extended Signal Peptide of Type V secretion system XCV3672 PF05658 Head domain of trimeric autotransporter adhesin XCV3674 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain XCV3674 PF02769 AIR synthase related protein, C-terminal domain XCV3674 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal XCV3675 PF13098 Thioredoxin-like domain XCV3675 PF10411 Disulfide bond isomerase protein N-terminus XCV3676 PF00589 Phage integrase family XCV3676 PF02899 Phage integrase, N-terminal SAM-like domain XCV3679 PF03739 Lipopolysaccharide export system permease LptF/LptG XCV3681 PF02789 Cytosol aminopeptidase family, N-terminal domain XCV3681 PF00883 Cytosol aminopeptidase family, catalytic domain XCV3684 PF00133 tRNA synthetases class I (I, L, M and V) XCV3684 PF10458 Valyl tRNA synthetase tRNA binding arm XCV3684 PF08264 Anticodon-binding domain of tRNA XCV3685 PF00593 TonB dependent receptor XCV3685 PF07715 TonB-dependent Receptor Plug Domain XCV3686 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain XCV3686 PF01464 Transglycosylase SLT domain XCV3687 PF00544 Pectate lyase XCV3690 PF01066 CDP-alcohol phosphatidyltransferase XCV3692 PF04073 Aminoacyl-tRNA editing domain XCV3692 PF03129 Anticodon binding domain XCV3692 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XCV3693 PF00816 H-NS histone family XCV3695 PF02405 Permease MlaE XCV3696 PF00005 ABC transporter XCV3697 PF02470 MlaD protein XCV3697 PF03886 ABC-type transport auxiliary lipoprotein component XCV3701 PF01144 Coenzyme A transferase XCV3702 PF01144 Coenzyme A transferase XCV3703 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XCV3703 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XCV3703 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XCV3703 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XCV3704 PF00483 Nucleotidyl transferase XCV3704 PF01050 Mannose-6-phosphate isomerase XCV3705 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XCV3705 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XCV3705 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XCV3706 PF04321 RmlD substrate binding domain XCV3707 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase XCV3708 PF00483 Nucleotidyl transferase XCV3709 PF16363 GDP-mannose 4,6 dehydratase XCV3710 PF01012 Electron transfer flavoprotein domain XCV3711 PF01012 Electron transfer flavoprotein domain XCV3711 PF00766 Electron transfer flavoprotein FAD-binding domain XCV3712 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XCV3713 PF00535 Glycosyl transferase family 2 XCV3717 PF16363 GDP-mannose 4,6 dehydratase XCV3718 PF16363 GDP-mannose 4,6 dehydratase XCV3719 PF00534 Glycosyl transferases group 1 XCV3719 PF13477 Glycosyl transferase 4-like XCV3720 PF13847 Methyltransferase domain XCV3720 PF00069 Protein kinase domain XCV3721 PF00005 ABC transporter XCV3723 PF13439 Glycosyltransferase Family 4 XCV3723 PF00534 Glycosyl transferases group 1 XCV3725 PF01053 Cys/Met metabolism PLP-dependent enzyme XCV3726 PF00571 CBS domain XCV3726 PF00291 Pyridoxal-phosphate dependent enzyme XCV3730 PF00437 Type II/IV secretion system protein XCV3731 PF02798 Glutathione S-transferase, N-terminal domain XCV3731 PF14497 Glutathione S-transferase, C-terminal domain XCV3733 PF00270 DEAD/DEAH box helicase XCV3733 PF00271 Helicase conserved C-terminal domain XCV3734 PF01242 6-pyruvoyl tetrahydropterin synthase XCV3737 PF13185 GAF domain XCV3739 PF13419 Haloacid dehalogenase-like hydrolase XCV3740 PF00817 impB/mucB/samB family XCV3740 PF11799 impB/mucB/samB family C-terminal domain XCV3741 PF07977 FabA-like domain XCV3742 PF00109 Beta-ketoacyl synthase, N-terminal domain XCV3742 PF02801 Beta-ketoacyl synthase, C-terminal domain XCV3744 PF01432 Peptidase family M3 XCV3747 PF00394 Multicopper oxidase XCV3747 PF07732 Multicopper oxidase XCV3747 PF07731 Multicopper oxidase XCV3748 PF05275 Copper resistance protein B precursor (CopB) XCV3749 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XCV3754 PF01380 SIS domain XCV3755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCV3756 PF00005 ABC transporter XCV3757 PF12704 MacB-like periplasmic core domain XCV3757 PF02687 FtsX-like permease family XCV3758 PF12704 MacB-like periplasmic core domain XCV3758 PF00005 ABC transporter XCV3758 PF02687 FtsX-like permease family XCV3760 PF00072 Response regulator receiver domain XCV3760 PF02954 Bacterial regulatory protein, Fis family XCV3760 PF00158 Sigma-54 interaction domain XCV3761 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV3761 PF00512 His Kinase A (phospho-acceptor) domain XCV3762 PF12804 MobA-like NTP transferase domain XCV3762 PF14602 Hexapeptide repeat of succinyl-transferase XCV3762 PF00132 Bacterial transferase hexapeptide (six repeats) XCV3765 PF01817 Chorismate mutase type II XCV3766 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain XCV3766 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain XCV3767 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCV3767 PF02874 ATP synthase alpha/beta family, beta-barrel domain XCV3768 PF00231 ATP synthase XCV3769 PF02874 ATP synthase alpha/beta family, beta-barrel domain XCV3769 PF00306 ATP synthase alpha/beta chain, C terminal domain XCV3769 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCV3770 PF00213 ATP synthase delta (OSCP) subunit XCV3771 PF00430 ATP synthase B/B' CF(0) XCV3772 PF00137 ATP synthase subunit C XCV3773 PF00119 ATP synthase A chain XCV3777 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XCV3777 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCV3779 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XCV3779 PF00364 Biotin-requiring enzyme XCV3779 PF02817 e3 binding domain XCV3787 PF03180 NLPA lipoprotein XCV3788 PF00528 Binding-protein-dependent transport system inner membrane component XCV3789 PF09383 NIL domain XCV3789 PF00005 ABC transporter XCV3790 PF00892 EamA-like transporter family XCV3791 PF04461 Protein of unknown function (DUF520) XCV3793 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV3793 PF00512 His Kinase A (phospho-acceptor) domain XCV3793 PF18415 Histidine kinase receptor ArcB trans-membrane domain XCV3793 PF01627 Hpt domain XCV3793 PF00989 PAS fold XCV3793 PF00072 Response regulator receiver domain XCV3798 PF13419 Haloacid dehalogenase-like hydrolase XCV3799 PF00849 RNA pseudouridylate synthase XCV3799 PF01479 S4 domain XCV3800 PF05175 Methyltransferase small domain XCV3800 PF08468 Methyltransferase small domain N-terminal XCV3802 PF07995 Glucose / Sorbosone dehydrogenase XCV3804 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV3804 PF00989 PAS fold XCV3804 PF00512 His Kinase A (phospho-acceptor) domain XCV3808 PF00842 Alanine racemase, C-terminal domain XCV3808 PF01168 Alanine racemase, N-terminal domain XCV3809 PF01266 FAD dependent oxidoreductase XCV3810 PF01037 Lrp/AsnC ligand binding domain XCV3812 PF01641 SelR domain XCV3814 PF01618 MotA/TolQ/ExbB proton channel family XCV3815 PF13677 Membrane MotB of proton-channel complex MotA/MotB XCV3815 PF00691 OmpA family XCV3821 PF01061 ABC-2 type transporter XCV3822 PF00005 ABC transporter XCV3823 PF00999 Sodium/hydrogen exchanger family XCV3824 PF02469 Fasciclin domain XCV3825 PF03167 Uracil DNA glycosylase superfamily XCV3827 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XCV3828 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV3828 PF03466 LysR substrate binding domain XCV3829 PF03358 NADPH-dependent FMN reductase XCV3830 PF00248 Aldo/keto reductase family XCV3834 PF01431 Peptidase family M13 XCV3834 PF05649 Peptidase family M13 XCV3837 PF13520 Amino acid permease XCV3839 PF00072 Response regulator receiver domain XCV3839 PF04397 LytTr DNA-binding domain XCV3840 PF00672 HAMP domain XCV3840 PF02743 Cache domain XCV3840 PF06580 Histidine kinase XCV3840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV3844 PF05974 Domain of unknown function (DUF892) XCV3845 PF05067 Manganese containing catalase XCV3849 PF01339 CheB methylesterase XCV3849 PF08448 PAS fold XCV3849 PF01739 CheR methyltransferase, SAM binding domain XCV3849 PF03705 CheR methyltransferase, all-alpha domain XCV3852 PF00158 Sigma-54 interaction domain XCV3852 PF02954 Bacterial regulatory protein, Fis family XCV3852 PF00072 Response regulator receiver domain XCV3854 PF01654 Cytochrome bd terminal oxidase subunit I XCV3855 PF02322 Cytochrome bd terminal oxidase subunit II XCV3859 PF16363 GDP-mannose 4,6 dehydratase XCV3861 PF03275 UDP-galactopyranose mutase XCV3863 PF00005 ABC transporter XCV3863 PF00664 ABC transporter transmembrane region XCV3866 PF08240 Alcohol dehydrogenase GroES-like domain XCV3866 PF00107 Zinc-binding dehydrogenase XCV3866 PF13823 Alcohol dehydrogenase GroES-associated XCV3875 PF07715 TonB-dependent Receptor Plug Domain XCV3875 PF00593 TonB dependent receptor XCV3878 PF00005 ABC transporter XCV3880 PF03466 LysR substrate binding domain XCV3880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV3881 PF01042 Endoribonuclease L-PSP XCV3884 PF03466 LysR substrate binding domain XCV3884 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV3885 PF02525 Flavodoxin-like fold XCV3891 PF01740 STAS domain XCV3891 PF00916 Sulfate permease family XCV3892 PF00654 Voltage gated chloride channel XCV3894 PF00557 Metallopeptidase family M24 XCV3896 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV3896 PF03466 LysR substrate binding domain XCV3899 PF01494 FAD binding domain XCV3900 PF01494 FAD binding domain XCV3904 PF00717 Peptidase S24-like XCV3905 PF11799 impB/mucB/samB family C-terminal domain XCV3905 PF13438 Domain of unknown function (DUF4113) XCV3905 PF00817 impB/mucB/samB family XCV3906 PF11798 IMS family HHH motif XCV3906 PF11799 impB/mucB/samB family C-terminal domain XCV3906 PF00817 impB/mucB/samB family XCV3906 PF13438 Domain of unknown function (DUF4113) XCV3912 PF04545 Sigma-70, region 4 XCV3912 PF04546 Sigma-70, non-essential region XCV3912 PF03979 Sigma-70 factor, region 1.1 XCV3912 PF00140 Sigma-70 factor, region 1.2 XCV3912 PF04539 Sigma-70 region 3 XCV3912 PF04542 Sigma-70 region 2 XCV3913 PF02580 D-Tyr-tRNA(Tyr) deacylase XCV3914 PF03279 Bacterial lipid A biosynthesis acyltransferase XCV3916 PF00925 GTP cyclohydrolase II XCV3919 PF05598 Transposase domain (DUF772) XCV3921 PF00535 Glycosyl transferase family 2 XCV3924 PF01029 NusB family XCV3924 PF01189 16S rRNA methyltransferase RsmB/F XCV3925 PF02911 Formyl transferase, C-terminal domain XCV3925 PF00551 Formyl transferase XCV3926 PF01327 Polypeptide deformylase XCV3927 PF01476 LysM domain XCV3928 PF17782 DprA winged helix domain XCV3928 PF02481 DNA recombination-mediator protein A XCV3929 PF04361 Protein of unknown function (DUF494) XCV3930 PF07963 Prokaryotic N-terminal methylation motif XCV3930 PF00114 Pilin (bacterial filament) XCV3932 PF01751 Toprim domain XCV3932 PF13368 Topoisomerase C-terminal repeat XCV3932 PF01131 DNA topoisomerase XCV3933 PF01300 Telomere recombination XCV3938 PF01343 Peptidase family S49 XCV3939 PF01554 MatE XCV3943 PF17764 3′ DNA-binding domain (3′BD) XCV3943 PF18319 PriA DNA helicase Cys-rich region (CRR) domain XCV3943 PF00271 Helicase conserved C-terminal domain XCV3943 PF00270 DEAD/DEAH box helicase XCV3943 PF18074 Primosomal protein N C-terminal domain XCV3947 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCV3948 PF03458 UPF0126 domain XCV3949 PF04545 Sigma-70, region 4 XCV3949 PF04542 Sigma-70 region 2 XCV3950 PF03167 Uracil DNA glycosylase superfamily XCV3951 PF00072 Response regulator receiver domain XCV3951 PF01339 CheB methylesterase XCV3952 PF18075 FtsX extracellular domain XCV3953 PF00005 ABC transporter XCV3954 PF12300 ATP-dependent RNA helicase RhlB XCV3954 PF00270 DEAD/DEAH box helicase XCV3954 PF00271 Helicase conserved C-terminal domain XCV3955 PF00085 Thioredoxin XCV3956 PF07498 Rho termination factor, N-terminal domain XCV3956 PF07497 Rho termination factor, RNA-binding domain XCV3956 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCV3958 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) XCV3959 PF03466 LysR substrate binding domain XCV3959 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV3960 PF03971 Monomeric isocitrate dehydrogenase XCV3962 PF04972 BON domain XCV3962 PF01476 LysM domain XCV3963 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term XCV3963 PF14489 QueF-like protein XCV3964 PF07687 Peptidase dimerisation domain XCV3964 PF01546 Peptidase family M20/M25/M40 XCV3965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCV3966 PF00873 AcrB/AcrD/AcrF family XCV3967 PF00873 AcrB/AcrD/AcrF family XCV3968 PF07063 Domain of unknown function (DUF1338) XCV3977 PF01427 D-ala-D-ala dipeptidase XCV3978 PF01510 N-acetylmuramoyl-L-alanine amidase XCV3980 PF13378 Enolase C-terminal domain-like XCV3980 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XCV3982 PF13520 Amino acid permease XCV3986 PF05360 yiaA/B two helix domain XCV3987 PF07995 Glucose / Sorbosone dehydrogenase XCV3988 PF00933 Glycosyl hydrolase family 3 N terminal domain XCV3988 PF14310 Fibronectin type III-like domain XCV3988 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCV3989 PF02152 Dihydroneopterin aldolase XCV3990 PF00814 Glycoprotease family XCV3991 PF01165 Ribosomal protein S21 XCV3992 PF09424 Yqey-like protein XCV3993 PF03631 Virulence factor BrkB XCV3994 PF08275 DNA primase catalytic core, N-terminal domain XCV3994 PF10410 DnaB-helicase binding domain of primase XCV3994 PF08278 DNA primase DnaG DnaB-binding XCV3994 PF01807 CHC2 zinc finger XCV3995 PF13593 SBF-like CPA transporter family (DUF4137) XCV3997 PF01040 UbiA prenyltransferase family XCV4002 PF00510 Cytochrome c oxidase subunit III XCV4003 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 XCV4005 PF00115 Cytochrome C and Quinol oxidase polypeptide I XCV4006 PF02790 Cytochrome C oxidase subunit II, transmembrane domain XCV4006 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XCV4008 PF00171 Aldehyde dehydrogenase family XCV4008 PF01619 Proline dehydrogenase XCV4008 PF18327 Proline utilization A proline dehydrogenase N-terminal domain XCV4008 PF14850 DNA-binding domain of Proline dehydrogenase XCV4010 PF00579 tRNA synthetases class I (W and Y) XCV4011 PF01551 Peptidase family M23 XCV4011 PF04225 Opacity-associated protein A LysM-like domain XCV4012 PF03702 Anhydro-N-acetylmuramic acid kinase XCV4014 PF07690 Major Facilitator Superfamily XCV4015 PF03372 Endonuclease/Exonuclease/phosphatase family XCV4016 PF00156 Phosphoribosyl transferase domain XCV4018 PF13614 AAA domain XCV4019 PF17762 HTH domain found in ParB protein XCV4019 PF02195 ParB-like nuclease domain XCV4021 PF01370 NAD dependent epimerase/dehydratase family XCV4022 PF00535 Glycosyl transferase family 2 XCV4025 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XCV4025 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XCV4025 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XCV4025 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XCV4026 PF00692 dUTPase XCV4027 PF02441 Flavoprotein XCV4027 PF04127 DNA / pantothenate metabolism flavoprotein XCV4028 PF04002 RadC-like JAB domain XCV4029 PF05746 DALR anticodon binding domain XCV4029 PF00750 tRNA synthetases class I (R) XCV4029 PF03485 Arginyl tRNA synthetase N terminal domain XCV4032 PF00106 short chain dehydrogenase XCV4034 PF03033 Glycosyltransferase family 28 N-terminal domain XCV4035 PF00501 AMP-binding enzyme XCV4035 PF00550 Phosphopantetheine attachment site XCV4035 PF00668 Condensation domain XCV4035 PF13193 AMP-binding enzyme C-terminal domain XCV4035 PF00975 Thioesterase domain XCV4036 PF00975 Thioesterase domain XCV4036 PF00550 Phosphopantetheine attachment site XCV4036 PF00668 Condensation domain XCV4036 PF00501 AMP-binding enzyme XCV4036 PF13193 AMP-binding enzyme C-terminal domain XCV4038 PF17810 Arginine decarboxylase helical bundle domain XCV4038 PF17944 Arginine decarboxylase C-terminal helical extension XCV4038 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XCV4039 PF17284 Spermidine synthase tetramerisation domain XCV4043 PF00041 Fibronectin type III domain XCV4043 PF02838 Glycosyl hydrolase family 20, domain 2 XCV4043 PF07555 beta-N-acetylglucosaminidase XCV4043 PF00963 Cohesin domain XCV4043 PF00754 F5/8 type C domain XCV4045 PF00543 Nitrogen regulatory protein P-II XCV4046 PF04380 Membrane fusogenic activity XCV4047 PF13335 Magnesium chelatase, subunit ChlI C-terminal XCV4047 PF01078 Magnesium chelatase, subunit ChlI XCV4051 PF12792 CSS motif domain associated with EAL XCV4051 PF00563 EAL domain XCV4052 PF00487 Fatty acid desaturase XCV4053 PF00970 Oxidoreductase FAD-binding domain XCV4053 PF00175 Oxidoreductase NAD-binding domain XCV4053 PF00111 2Fe-2S iron-sulfur cluster binding domain XCV4054 PF00440 Bacterial regulatory proteins, tetR family XCV4058 PF01139 tRNA-splicing ligase RtcB XCV4067 PF01370 NAD dependent epimerase/dehydratase family XCV4067 PF08338 Domain of unknown function (DUF1731) XCV4068 PF00486 Transcriptional regulatory protein, C terminal XCV4068 PF00072 Response regulator receiver domain XCV4069 PF08521 Two-component sensor kinase N-terminal XCV4069 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV4069 PF00512 His Kinase A (phospho-acceptor) domain XCV4074 PF00595 PDZ domain XCV4078 PF01594 AI-2E family transporter XCV4079 PF13419 Haloacid dehalogenase-like hydrolase XCV4080 PF00883 Cytosol aminopeptidase family, catalytic domain XCV4080 PF02789 Cytosol aminopeptidase family, N-terminal domain XCV4082 PF04542 Sigma-70 region 2 XCV4082 PF08281 Sigma-70, region 4 XCV4083 PF00199 Catalase XCV4086 PF00072 Response regulator receiver domain XCV4086 PF00196 Bacterial regulatory proteins, luxR family XCV4087 PF07730 Histidine kinase XCV4088 PF13533 Biotin-lipoyl like XCV4089 PF00005 ABC transporter XCV4093 PF00892 EamA-like transporter family XCV4094 PF00892 EamA-like transporter family XCV4097 PF00753 Metallo-beta-lactamase superfamily XCV4098 PF00579 tRNA synthetases class I (W and Y) XCV4099 PF05532 CsbD-like XCV4102 PF00491 Arginase family XCV4107 PF02223 Thymidylate kinase XCV4109 PF03309 Type III pantothenate kinase XCV4110 PF02237 Biotin protein ligase C terminal domain XCV4110 PF03099 Biotin/lipoate A/B protein ligase family XCV4110 PF08279 HTH domain XCV4112 PF06167 Glucose-regulated metallo-peptidase M90 XCV4115 PF00672 HAMP domain XCV4115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV4115 PF00512 His Kinase A (phospho-acceptor) domain XCV4116 PF00072 Response regulator receiver domain XCV4116 PF00486 Transcriptional regulatory protein, C terminal XCV4118 PF01207 Dihydrouridine synthase (Dus) XCV4122 PF00199 Catalase XCV4122 PF06628 Catalase-related immune-responsive XCV4123 PF06733 DEAD_2 XCV4123 PF13307 Helicase C-terminal domain XCV4126 PF01488 Shikimate / quinate 5-dehydrogenase XCV4126 PF18317 Shikimate 5'-dehydrogenase C-terminal domain XCV4126 PF08501 Shikimate dehydrogenase substrate binding domain XCV4128 PF00258 Flavodoxin XCV4128 PF00175 Oxidoreductase NAD-binding domain XCV4128 PF00667 FAD binding domain XCV4131 PF00490 Delta-aminolevulinic acid dehydratase XCV4136 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XCV4136 PF00326 Prolyl oligopeptidase family XCV4137 PF00043 Glutathione S-transferase, C-terminal domain XCV4137 PF02798 Glutathione S-transferase, N-terminal domain XCV4141 PF04820 Tryptophan halogenase XCV4144 PF00005 ABC transporter XCV4146 PF01381 Helix-turn-helix XCV4149 PF02583 Metal-sensitive transcriptional repressor XCV4150 PF01545 Cation efflux family XCV4151 PF01383 CpcD/allophycocyanin linker domain XCV4151 PF00175 Oxidoreductase NAD-binding domain XCV4152 PF00005 ABC transporter XCV4153 PF01061 ABC-2 type transporter XCV4154 PF02558 Ketopantoate reductase PanE/ApbA XCV4154 PF08546 Ketopantoate reductase PanE/ApbA C terminal XCV4159 PF00258 Flavodoxin XCV4160 PF00268 Ribonucleotide reductase, small chain XCV4161 PF00317 Ribonucleotide reductase, all-alpha domain XCV4161 PF02867 Ribonucleotide reductase, barrel domain XCV4161 PF03477 ATP cone domain XCV4163 PF00583 Acetyltransferase (GNAT) family XCV4163 PF13607 Succinyl-CoA ligase like flavodoxin domain XCV4163 PF13380 CoA binding domain XCV4164 PF03448 MgtE intracellular N domain XCV4164 PF01769 Divalent cation transporter XCV4164 PF00571 CBS domain XCV4165 PF00194 Eukaryotic-type carbonic anhydrase XCV4166 PF02254 TrkA-N domain XCV4166 PF00999 Sodium/hydrogen exchanger family XCV4168 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XCV4168 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XCV4169 PF00723 Glycosyl hydrolases family 15 XCV4171 PF05166 YcgL domain XCV4172 PF02801 Beta-ketoacyl synthase, C-terminal domain XCV4172 PF00109 Beta-ketoacyl synthase, N-terminal domain XCV4174 PF00535 Glycosyl transferase family 2 XCV4176 PF05598 Transposase domain (DUF772) XCV4176 PF01609 Transposase DDE domain XCV4186 PF07977 FabA-like domain XCV4187 PF01553 Acyltransferase XCV4189 PF00550 Phosphopantetheine attachment site XCV4190 PF04820 Tryptophan halogenase XCV4198 PF01218 Coproporphyrinogen III oxidase XCV4200 PF01612 3'-5' exonuclease XCV4200 PF00476 DNA polymerase family A XCV4200 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XCV4200 PF01367 5'-3' exonuclease, C-terminal SAM fold XCV4206 PF00069 Protein kinase domain XCV4212 PF00248 Aldo/keto reductase family XCV4213 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV4213 PF03466 LysR substrate binding domain XCV4217 PF04717 Type VI secretion system, phage-baseplate injector XCV4217 PF16671 Actin cross-linking domain XCV4220 PF00069 Protein kinase domain XCV4220 PF03793 PASTA domain XCV4222 PF08281 Sigma-70, region 4 XCV4222 PF04542 Sigma-70 region 2 XCV4225 PF00328 Histidine phosphatase superfamily (branch 2) XCV4234 PF01527 Transposase XCV4235 PF13683 Integrase core domain XCV4235 PF13276 HTH-like domain XCV4236 PF00004 ATPase family associated with various cellular activities (AAA) XCV4236 PF07724 AAA domain (Cdc48 subfamily) XCV4236 PF17871 AAA lid domain XCV4236 PF10431 C-terminal, D2-small domain, of ClpB protein XCV4241 PF05638 Type VI secretion system effector, Hcp XCV4246 PF12464 Maltose acetyltransferase XCV4246 PF14602 Hexapeptide repeat of succinyl-transferase XCV4248 PF13361 UvrD-like helicase C-terminal domain XCV4248 PF00580 UvrD/REP helicase N-terminal domain XCV4251 PF13091 PLD-like domain XCV4251 PF13396 Phospholipase_D-nuclease N-terminal XCV4252 PF03466 LysR substrate binding domain XCV4252 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV4253 PF03737 Aldolase/RraA XCV4254 PF04303 PrpF protein XCV4255 PF04909 Amidohydrolase XCV4256 PF00471 Ribosomal protein L33 XCV4257 PF00830 Ribosomal L28 family XCV4259 PF00873 AcrB/AcrD/AcrF family XCV4260 PF13533 Biotin-lipoyl like XCV4264 PF02527 rRNA small subunit methyltransferase G XCV4265 PF09423 PhoD-like phosphatase XCV4265 PF16655 PhoD-like phosphatase, N-terminal domain XCV4266 PF16655 PhoD-like phosphatase, N-terminal domain XCV4266 PF09423 PhoD-like phosphatase XCV4267 PF01648 4'-phosphopantetheinyl transferase superfamily XCV4268 PF04226 Transglycosylase associated protein XCV4270 PF03372 Endonuclease/Exonuclease/phosphatase family XCV4272 PF00474 Sodium:solute symporter family XCV4273 PF04341 Protein of unknown function, DUF485 XCV4275 PF00501 AMP-binding enzyme XCV4275 PF16177 Acetyl-coenzyme A synthetase N-terminus XCV4275 PF13193 AMP-binding enzyme C-terminal domain XCV4276 PF00196 Bacterial regulatory proteins, luxR family XCV4276 PF00072 Response regulator receiver domain XCV4281 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XCV4281 PF04616 Glycosyl hydrolases family 43 XCV4282 PF00248 Aldo/keto reductase family XCV4285 PF01557 Fumarylacetoacetate (FAA) hydrolase family XCV4287 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XCV4287 PF13378 Enolase C-terminal domain-like XCV4288 PF05336 L-rhamnose mutarotase XCV4289 PF07690 Major Facilitator Superfamily XCV4290 PF01614 Bacterial transcriptional regulator XCV4290 PF09339 IclR helix-turn-helix domain XCV4291 PF02659 Putative manganese efflux pump XCV4292 PF00512 His Kinase A (phospho-acceptor) domain XCV4292 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV4295 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain XCV4295 PF06165 Glycosyltransferase family 36 XCV4300 PF13570 PQQ-like domain XCV4300 PF01011 PQQ enzyme repeat XCV4300 PF13360 PQQ-like domain XCV4305 PF04357 TamB, inner membrane protein subunit of TAM complex XCV4306 PF17243 POTRA domain TamA domain 1 XCV4306 PF01103 Surface antigen XCV4307 PF07715 TonB-dependent Receptor Plug Domain XCV4307 PF00593 TonB dependent receptor XCV4309 PF13181 Tetratricopeptide repeat XCV4310 PF02092 Glycyl-tRNA synthetase beta subunit XCV4310 PF05746 DALR anticodon binding domain XCV4311 PF02091 Glycyl-tRNA synthetase alpha subunit XCV4312 PF00437 Type II/IV secretion system protein XCV4312 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XCV4317 PF00117 Glutamine amidotransferase class-I XCV4317 PF00958 GMP synthase C terminal domain XCV4319 PF00902 Sec-independent protein translocase protein (TatC) XCV4320 PF02416 mttA/Hcf106 family XCV4321 PF02416 mttA/Hcf106 family XCV4323 PF00762 Ferrochelatase XCV4324 PF12697 Alpha/beta hydrolase family XCV4327 PF04381 Putative exonuclease, RdgC XCV4328 PF01171 PP-loop family XCV4332 PF00356 Bacterial regulatory proteins, lacI family XCV4333 PF07488 Glycosyl hydrolase family 67 middle domain XCV4333 PF07477 Glycosyl hydrolase family 67 C-terminus XCV4333 PF03648 Glycosyl hydrolase family 67 N-terminus XCV4335 PF13378 Enolase C-terminal domain-like XCV4335 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XCV4336 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XCV4336 PF04616 Glycosyl hydrolases family 43 XCV4337 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCV4337 PF00933 Glycosyl hydrolase family 3 N terminal domain XCV4337 PF07691 PA14 domain XCV4337 PF14310 Fibronectin type III-like domain XCV4338 PF01232 Mannitol dehydrogenase Rossmann domain XCV4338 PF08125 Mannitol dehydrogenase C-terminal domain XCV4345 PF00171 Aldehyde dehydrogenase family XCV4348 PF00202 Aminotransferase class-III XCV4350 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XCV4350 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XCV4353 PF08450 SMP-30/Gluconolactonase/LRE-like region XCV4355 PF00331 Glycosyl hydrolase family 10 XCV4356 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XCV4356 PF00703 Glycosyl hydrolases family 2 XCV4356 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XCV4356 PF02837 Glycosyl hydrolases family 2, sugar binding domain XCV4356 PF16355 Domain of unknown function (DUF4982) XCV4357 PF02614 Glucuronate isomerase XCV4358 PF00331 Glycosyl hydrolase family 10 XCV4358 PF03422 Carbohydrate binding module (family 6) XCV4358 PF00553 Cellulose binding domain XCV4360 PF00331 Glycosyl hydrolase family 10 XCV4360 PF03422 Carbohydrate binding module (family 6) XCV4360 PF00553 Cellulose binding domain XCV4364 PF04616 Glycosyl hydrolases family 43 XCV4370 PF16197 Ketoacyl-synthetase C-terminal extension XCV4370 PF08240 Alcohol dehydrogenase GroES-like domain XCV4370 PF00698 Acyl transferase domain XCV4370 PF00107 Zinc-binding dehydrogenase XCV4370 PF08659 KR domain XCV4370 PF00550 Phosphopantetheine attachment site XCV4370 PF00109 Beta-ketoacyl synthase, N-terminal domain XCV4370 PF02801 Beta-ketoacyl synthase, C-terminal domain XCV4370 PF14765 Polyketide synthase dehydratase XCV4371 PF01553 Acyltransferase XCV4373 PF00356 Bacterial regulatory proteins, lacI family XCV4377 PF04820 Tryptophan halogenase XCV4378 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family XCV4379 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) XCV4380 PF04337 Protein of unknown function, DUF480 XCV4383 PF13361 UvrD-like helicase C-terminal domain XCV4383 PF00580 UvrD/REP helicase N-terminal domain XCV4384 PF00265 Thymidine kinase XCV4386 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCV4386 PF00512 His Kinase A (phospho-acceptor) domain XCV4386 PF01590 GAF domain XCV4386 PF00360 Phytochrome region XCV4386 PF08446 PAS fold XCV4387 PF04349 Periplasmic glucan biosynthesis protein, MdoG XCV4390 PF06827 Zinc finger found in FPG and IleRS XCV4390 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XCV4390 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XCV4391 PF03594 Benzoate membrane transport protein XCV4392 PF08446 PAS fold XCV4392 PF13426 PAS domain XCV4392 PF01590 GAF domain XCV4392 PF00360 Phytochrome region XCV4393 PF01126 Heme oxygenase XCV4394 PF07690 Major Facilitator Superfamily XCV4395 PF01263 Aldose 1-epimerase XCV4397 PF02810 SEC-C motif XCV4398 PF01925 Sulfite exporter TauE/SafE XCV4402 PF01227 GTP cyclohydrolase I XCV4404 PF07869 Protein of unknown function (DUF1656) XCV4405 PF00529 HlyD membrane-fusion protein of T1SS XCV4405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCV4406 PF02321 Outer membrane efflux protein XCV4407 PF04632 Fusaric acid resistance protein family XCV4408 PF00083 Sugar (and other) transporter XCV4412 PF13091 PLD-like domain XCV4412 PF13396 Phospholipase_D-nuclease N-terminal XCV4422 PF00849 RNA pseudouridylate synthase XCV4433 PF00440 Bacterial regulatory proteins, tetR family XCV4439 PF01381 Helix-turn-helix XCV4441 PF13538 UvrD-like helicase C-terminal domain XCV4442 PF00580 UvrD/REP helicase N-terminal domain XCV4442 PF12705 PD-(D/E)XK nuclease superfamily XCV4442 PF13361 UvrD-like helicase C-terminal domain XCV4443 PF17946 RecC C-terminal domain XCV4450 PF00005 ABC transporter XCV4451 PF02405 Permease MlaE XCV4452 PF02470 MlaD protein XCV4453 PF05494 MlaC protein XCV4455 PF04333 MlaA lipoprotein XCV4457 PF00255 Glutathione peroxidase XCV4459 PF02646 RmuC family XCV4460 PF00107 Zinc-binding dehydrogenase XCV4460 PF08240 Alcohol dehydrogenase GroES-like domain XCV4461 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCV4461 PF03466 LysR substrate binding domain XCV4466 PF13520 Amino acid permease XCV4467 PF17678 Glycosyl hydrolase family 92 N-terminal domain XCV4467 PF07971 Glycosyl hydrolase family 92 XCV4468 PF07715 TonB-dependent Receptor Plug Domain XCV4468 PF00593 TonB dependent receptor XCV4469 PF10947 Protein of unknown function (DUF2628) XCV4470 PF00990 Diguanylate cyclase, GGDEF domain XCV4471 PF05651 Putative sugar diacid recognition XCV4471 PF13556 PucR C-terminal helix-turn-helix domain XCV4471 PF17853 GGDEF-like domain XCV4472 PF02595 Glycerate kinase family XCV4473 PF07690 Major Facilitator Superfamily XCV4476 PF17785 PUA-like domain XCV4476 PF10672 S-adenosylmethionine-dependent methyltransferase XCV4477 PF03741 Integral membrane protein TerC family XCV4478 PF01694 Rhomboid family XCV4479 PF03009 Glycerophosphoryl diester phosphodiesterase family XCV4482 PF01569 PAP2 superfamily XCV4483 PF10396 GTP-binding protein TrmE N-terminus XCV4483 PF12631 MnmE helical domain XCV4483 PF01926 50S ribosome-binding GTPase XCV4484 PF01522 Polysaccharide deacetylase XCV4485 PF02096 60Kd inner membrane protein XCV4485 PF14849 YidC periplasmic domain XCV4486 PF00825 Ribonuclease P XCV4487 PF00468 Ribosomal protein L34 XCVb0008 PF03389 MobA/MobL family XCVb0011 PF00665 Integrase core domain XCVb0011 PF13333 Integrase core domain XCVb0011 PF13276 HTH-like domain XCVb0013 PF03695 Uncharacterised protein family (UPF0149) XCVb0013 PF02810 SEC-C motif XCVb0014 PF13276 HTH-like domain XCVb0014 PF13683 Integrase core domain XCVb0015 PF01526 Tn3 transposase DDE domain XCVb0015 PF13700 Domain of unknown function (DUF4158) XCVb0018 PF02796 Helix-turn-helix domain of resolvase XCVb0018 PF00239 Resolvase, N terminal domain XCVb0021 PF07015 VirC1 protein XCVc0002 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system XCVc0005 PF07015 VirC1 protein XCVc0008 PF00239 Resolvase, N terminal domain XCVc0008 PF02796 Helix-turn-helix domain of resolvase XCVc0009 PF00872 Transposase, Mutator family XCVc0011 PF01527 Transposase XCVc0022 PF18340 DNA relaxase TraI 2B/2B-like domain XCVc0022 PF18272 single-stranded DNA binding TraI N-terminal subdomain XCVc0022 PF08751 TrwC relaxase XCVc0022 PF07057 DNA helicase TraI XCVc0026 PF13091 PLD-like domain XCVc0028 PF01464 Transglycosylase SLT domain XCVc0029 PF00437 Type II/IV secretion system protein XCVc0030 PF03743 Bacterial conjugation TrbI-like protein XCVc0031 PF03524 Conjugal transfer protein XCVc0033 PF04610 TrbL/VirB6 plasmid conjugal transfer protein XCVc0036 PF03695 Uncharacterised protein family (UPF0149) XCVc0036 PF02810 SEC-C motif XCVc0037 PF01526 Tn3 transposase DDE domain XCVc0037 PF13700 Domain of unknown function (DUF4158) XCVc0040 PF02796 Helix-turn-helix domain of resolvase XCVc0040 PF00239 Resolvase, N terminal domain XCVd0001 PF13614 AAA domain XCVd0001 PF00376 MerR family regulatory protein XCVd0002 PF17762 HTH domain found in ParB protein XCVd0002 PF02195 ParB-like nuclease domain XCVd0003 PF17762 HTH domain found in ParB protein XCVd0003 PF02195 ParB-like nuclease domain XCVd0007 PF00437 Type II/IV secretion system protein XCVd0014 PF00437 Type II/IV secretion system protein XCVd0016 PF00437 Type II/IV secretion system protein XCVd0017 PF04917 Bacterial shufflon protein, N-terminal constant region XCVd0021 PF05598 Transposase domain (DUF772) XCVd0021 PF01609 Transposase DDE domain XCVd0022 PF13683 Integrase core domain XCVd0022 PF13276 HTH-like domain XCVd0024 PF13333 Integrase core domain XCVd0024 PF00665 Integrase core domain XCVd0024 PF13276 HTH-like domain XCVd0025 PF01527 Transposase XCVd0026 PF05598 Transposase domain (DUF772) XCVd0026 PF01609 Transposase DDE domain XCVd0036 PF01131 DNA topoisomerase XCVd0036 PF01751 Toprim domain XCVd0036 PF13368 Topoisomerase C-terminal repeat XCVd0045 PF13098 Thioredoxin-like domain XCVd0049 PF03796 DnaB-like helicase C terminal domain XCVd0049 PF00772 DnaB-like helicase N terminal domain XCVd0072 PF07517 SecA DEAD-like domain XCVd0072 PF01043 SecA preprotein cross-linking domain XCVd0072 PF07516 SecA Wing and Scaffold domain XCVd0072 PF02810 SEC-C motif XCVd0074 PF00004 ATPase family associated with various cellular activities (AAA) XCVd0079 PF13361 UvrD-like helicase C-terminal domain XCVd0079 PF00580 UvrD/REP helicase N-terminal domain XCVd0090 PF01527 Transposase XCVd0091 PF13276 HTH-like domain XCVd0091 PF13683 Integrase core domain XCVd0097 PF13700 Domain of unknown function (DUF4158) XCVd0097 PF01526 Tn3 transposase DDE domain XCVd0102 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin XCVd0103 PF00239 Resolvase, N terminal domain XCVd0103 PF02796 Helix-turn-helix domain of resolvase XCVd0107 PF01527 Transposase XCVd0109 PF00239 Resolvase, N terminal domain XCVd0109 PF02796 Helix-turn-helix domain of resolvase XCVd0112 PF01526 Tn3 transposase DDE domain XCVd0112 PF13700 Domain of unknown function (DUF4158) XCVd0113 PF02810 SEC-C motif XCVd0113 PF03695 Uncharacterised protein family (UPF0149) XCVd0115 PF01526 Tn3 transposase DDE domain XCVd0115 PF13700 Domain of unknown function (DUF4158) XCVd0128 PF00216 Bacterial DNA-binding protein XCVd0134 PF04381 Putative exonuclease, RdgC XCVd0137 PF10411 Disulfide bond isomerase protein N-terminus XCVd0137 PF13098 Thioredoxin-like domain XCVd0150 PF08495 FIST N domain XCVd0150 PF10442 FIST C domain XCVd0150 PF00990 Diguanylate cyclase, GGDEF domain XCVd0150 PF00563 EAL domain XCVd0152 PF01751 Toprim domain XCVd0152 PF01131 DNA topoisomerase