locus-tag class description DGM98_00010 PF00308 Bacterial dnaA protein DGM98_00010 PF08299 Bacterial dnaA protein helix-turn-helix DGM98_00010 PF11638 DnaA N-terminal domain DGM98_00015 PF00712 DNA polymerase III beta subunit, N-terminal domain DGM98_00015 PF02767 DNA polymerase III beta subunit, central domain DGM98_00015 PF02768 DNA polymerase III beta subunit, C-terminal domain DGM98_00020 PF02463 RecF/RecN/SMC N terminal domain DGM98_00025 PF01751 Toprim domain DGM98_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_00025 PF00986 DNA gyrase B subunit, carboxyl terminus DGM98_00025 PF00204 DNA gyrase B DGM98_00025 PF18053 DNA gyrase B subunit insert domain DGM98_00035 PF01435 Peptidase family M48 DGM98_00045 PF03544 Gram-negative bacterial TonB protein C-terminal DGM98_00050 PF01618 MotA/TolQ/ExbB proton channel family DGM98_00055 PF02472 Biopolymer transport protein ExbD/TolR DGM98_00060 PF02472 Biopolymer transport protein ExbD/TolR DGM98_00065 PF02472 Biopolymer transport protein ExbD/TolR DGM98_00070 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DGM98_00080 PF13091 PLD-like domain DGM98_00080 PF13396 Phospholipase_D-nuclease N-terminal DGM98_00100 PF04055 Radical SAM superfamily DGM98_00110 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DGM98_00125 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DGM98_00125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DGM98_00130 PF03572 Peptidase family S41 DGM98_00130 PF13180 PDZ domain DGM98_00135 PF01551 Peptidase family M23 DGM98_00145 PF04389 Peptidase family M28 DGM98_00155 PF00150 Cellulase (glycosyl hydrolase family 5) DGM98_00160 PF00150 Cellulase (glycosyl hydrolase family 5) DGM98_00165 PF00150 Cellulase (glycosyl hydrolase family 5) DGM98_00175 PF08240 Alcohol dehydrogenase GroES-like domain DGM98_00175 PF00107 Zinc-binding dehydrogenase DGM98_00190 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DGM98_00190 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGM98_00195 PF01493 GXGXG motif DGM98_00195 PF04898 Glutamate synthase central domain DGM98_00195 PF01645 Conserved region in glutamate synthase DGM98_00195 PF00310 Glutamine amidotransferases class-II DGM98_00285 PF00270 DEAD/DEAH box helicase DGM98_00285 PF09369 Domain of unknown function (DUF1998) DGM98_00285 PF00271 Helicase conserved C-terminal domain DGM98_00290 PF03006 Haemolysin-III related DGM98_00310 PF00106 short chain dehydrogenase DGM98_00320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_00320 PF03466 LysR substrate binding domain DGM98_00340 PF02525 Flavodoxin-like fold DGM98_00370 PF05532 CsbD-like DGM98_00390 PF16485 Protealysin propeptide DGM98_00390 PF02868 Thermolysin metallopeptidase, alpha-helical domain DGM98_00390 PF01447 Thermolysin metallopeptidase, catalytic domain DGM98_00400 PF00293 NUDIX domain DGM98_00400 PF13344 Haloacid dehalogenase-like hydrolase DGM98_00420 PF00085 Thioredoxin DGM98_00430 PF08946 Osmosensory transporter coiled coil DGM98_00430 PF00083 Sugar (and other) transporter DGM98_00475 PF17863 AAA lid domain DGM98_00475 PF07726 ATPase family associated with various cellular activities (AAA) DGM98_00520 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DGM98_00525 PF00155 Aminotransferase class I and II DGM98_00530 PF07715 TonB-dependent Receptor Plug Domain DGM98_00530 PF00593 TonB dependent receptor DGM98_00545 PF00171 Aldehyde dehydrogenase family DGM98_00565 PF02735 Ku70/Ku80 beta-barrel domain DGM98_00570 PF01070 FMN-dependent dehydrogenase DGM98_00580 PF00144 Beta-lactamase DGM98_00585 PF07730 Histidine kinase DGM98_00590 PF00072 Response regulator receiver domain DGM98_00590 PF00196 Bacterial regulatory proteins, luxR family DGM98_00610 PF18500 CadC C-terminal domain 1 DGM98_00610 PF00486 Transcriptional regulatory protein, C terminal DGM98_00615 PF07055 Enoyl reductase FAD binding domain DGM98_00615 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DGM98_00615 PF12241 Trans-2-enoyl-CoA reductase catalytic region DGM98_00625 PF00294 pfkB family carbohydrate kinase DGM98_00710 PF00872 Transposase, Mutator family DGM98_00770 PF00128 Alpha amylase, catalytic domain DGM98_00770 PF11896 Domain of unknown function (DUF3416) DGM98_00775 PF16657 Maltogenic Amylase, C-terminal domain DGM98_00775 PF00128 Alpha amylase, catalytic domain DGM98_00780 PF00128 Alpha amylase, catalytic domain DGM98_00780 PF02806 Alpha amylase, C-terminal all-beta domain DGM98_00780 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DGM98_00790 PF00248 Aldo/keto reductase family DGM98_00795 PF00135 Carboxylesterase family DGM98_00800 PF13472 GDSL-like Lipase/Acylhydrolase family DGM98_00800 PF07859 alpha/beta hydrolase fold DGM98_00810 PF03480 Bacterial extracellular solute-binding protein, family 7 DGM98_00820 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DGM98_00825 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DGM98_00825 PF04616 Glycosyl hydrolases family 43 DGM98_00830 PF00356 Bacterial regulatory proteins, lacI family DGM98_00840 PF04962 KduI/IolB family DGM98_00855 PF00657 GDSL-like Lipase/Acylhydrolase DGM98_00865 PF00351 Biopterin-dependent aromatic amino acid hydroxylase DGM98_00870 PF01037 Lrp/AsnC ligand binding domain DGM98_00875 PF00593 TonB dependent receptor DGM98_00875 PF07715 TonB-dependent Receptor Plug Domain DGM98_00875 PF07660 Secretin and TonB N terminus short domain DGM98_00880 PF01734 Patatin-like phospholipase DGM98_00890 PF00005 ABC transporter DGM98_00905 PF00005 ABC transporter DGM98_00910 PF00528 Binding-protein-dependent transport system inner membrane component DGM98_00920 PF03781 Sulfatase-modifying factor enzyme 1 DGM98_00920 PF12867 DinB superfamily DGM98_00950 PF01883 Iron-sulfur cluster assembly protein DGM98_00950 PF10609 NUBPL iron-transfer P-loop NTPase DGM98_00965 PF13091 PLD-like domain DGM98_00970 PF03061 Thioesterase superfamily DGM98_01000 PF08240 Alcohol dehydrogenase GroES-like domain DGM98_01000 PF00107 Zinc-binding dehydrogenase DGM98_01010 PF02673 Bacitracin resistance protein BacA DGM98_01020 PF03951 Glutamine synthetase, beta-Grasp domain DGM98_01020 PF00120 Glutamine synthetase, catalytic domain DGM98_01025 PF00543 Nitrogen regulatory protein P-II DGM98_01030 PF00909 Ammonium Transporter Family DGM98_01035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_01035 PF00512 His Kinase A (phospho-acceptor) domain DGM98_01035 PF00989 PAS fold DGM98_01040 PF02954 Bacterial regulatory protein, Fis family DGM98_01040 PF00072 Response regulator receiver domain DGM98_01040 PF00158 Sigma-54 interaction domain DGM98_01045 PF00080 Copper/zinc superoxide dismutase (SODC) DGM98_01050 PF00080 Copper/zinc superoxide dismutase (SODC) DGM98_01055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DGM98_01065 PF00108 Thiolase, N-terminal domain DGM98_01065 PF02803 Thiolase, C-terminal domain DGM98_01100 PF00581 Rhodanese-like domain DGM98_01105 PF02556 Preprotein translocase subunit SecB DGM98_01110 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DGM98_01110 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DGM98_01125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DGM98_01125 PF00205 Thiamine pyrophosphate enzyme, central domain DGM98_01125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DGM98_01130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_01135 PF02954 Bacterial regulatory protein, Fis family DGM98_01135 PF00072 Response regulator receiver domain DGM98_01135 PF00158 Sigma-54 interaction domain DGM98_01150 PF07690 Major Facilitator Superfamily DGM98_01155 PF00588 SpoU rRNA Methylase family DGM98_01170 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DGM98_01170 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DGM98_01175 PF02661 Fic/DOC family DGM98_01175 PF13784 Fic/DOC family N-terminal DGM98_01180 PF00561 alpha/beta hydrolase fold DGM98_01185 PF03692 Putative zinc- or iron-chelating domain DGM98_01190 PF00501 AMP-binding enzyme DGM98_01195 PF00072 Response regulator receiver domain DGM98_01195 PF00486 Transcriptional regulatory protein, C terminal DGM98_01200 PF00144 Beta-lactamase DGM98_01205 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family DGM98_01235 PF03109 ABC1 family DGM98_01245 PF00849 RNA pseudouridylate synthase DGM98_01255 PF00472 RF-1 domain DGM98_01265 PF01112 Asparaginase DGM98_01270 PF01432 Peptidase family M3 DGM98_01275 PF00106 short chain dehydrogenase DGM98_01280 PF12706 Beta-lactamase superfamily domain DGM98_01305 PF12833 Helix-turn-helix domain DGM98_01310 PF00999 Sodium/hydrogen exchanger family DGM98_01315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_01315 PF03466 LysR substrate binding domain DGM98_01320 PF01274 Malate synthase DGM98_01325 PF00463 Isocitrate lyase family DGM98_01330 PF00990 Diguanylate cyclase, GGDEF domain DGM98_01350 PF00326 Prolyl oligopeptidase family DGM98_01355 PF02785 Biotin carboxylase C-terminal domain DGM98_01355 PF00289 Biotin carboxylase, N-terminal domain DGM98_01355 PF00364 Biotin-requiring enzyme DGM98_01355 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DGM98_01355 PF18140 Propionyl-coenzyme A carboxylase BT domain DGM98_01360 PF01039 Carboxyl transferase domain DGM98_01365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DGM98_01365 PF02770 Acyl-CoA dehydrogenase, middle domain DGM98_01365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DGM98_01425 PF07683 Cobalamin synthesis protein cobW C-terminal domain DGM98_01425 PF02492 CobW/HypB/UreG, nucleotide-binding domain DGM98_01445 PF03969 AFG1-like ATPase DGM98_01450 PF01047 MarR family DGM98_01455 PF02566 OsmC-like protein DGM98_01485 PF16884 N-terminal domain of oxidoreductase DGM98_01485 PF00107 Zinc-binding dehydrogenase DGM98_01490 PF00248 Aldo/keto reductase family DGM98_01500 PF00849 RNA pseudouridylate synthase DGM98_01505 PF00593 TonB dependent receptor DGM98_01515 PF00271 Helicase conserved C-terminal domain DGM98_01515 PF04408 Helicase associated domain (HA2) DGM98_01515 PF00270 DEAD/DEAH box helicase DGM98_01515 PF08482 ATP-dependent helicase C-terminal DGM98_01525 PF07308 Protein of unknown function (DUF1456) DGM98_01530 PF00576 HIUase/Transthyretin family DGM98_01535 PF13454 FAD-NAD(P)-binding DGM98_01540 PF09349 OHCU decarboxylase DGM98_01540 PF01014 Uricase DGM98_01555 PF00266 Aminotransferase class-V DGM98_01560 PF07687 Peptidase dimerisation domain DGM98_01560 PF01546 Peptidase family M20/M25/M40 DGM98_01565 PF03466 LysR substrate binding domain DGM98_01565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_01570 PF00561 alpha/beta hydrolase fold DGM98_01585 PF01425 Amidase DGM98_01590 PF01156 Inosine-uridine preferring nucleoside hydrolase DGM98_01600 PF00860 Permease family DGM98_01610 PF00111 2Fe-2S iron-sulfur cluster binding domain DGM98_01615 PF00355 Rieske [2Fe-2S] domain DGM98_01620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_01620 PF03466 LysR substrate binding domain DGM98_01625 PF01026 TatD related DNase DGM98_01635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_01635 PF03466 LysR substrate binding domain DGM98_01640 PF07690 Major Facilitator Superfamily DGM98_01650 PF08386 TAP-like protein DGM98_01650 PF00561 alpha/beta hydrolase fold DGM98_01655 PF02146 Sir2 family DGM98_01660 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DGM98_01665 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DGM98_01665 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DGM98_01675 PF00551 Formyl transferase DGM98_01680 PF00072 Response regulator receiver domain DGM98_01680 PF00486 Transcriptional regulatory protein, C terminal DGM98_01685 PF00672 HAMP domain DGM98_01685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_01685 PF00512 His Kinase A (phospho-acceptor) domain DGM98_01690 PF00529 HlyD membrane-fusion protein of T1SS DGM98_01690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGM98_01695 PF00873 AcrB/AcrD/AcrF family DGM98_01700 PF02321 Outer membrane efflux protein DGM98_01700 PF08139 Prokaryotic membrane lipoprotein lipid attachment site DGM98_01715 PF02677 Epoxyqueuosine reductase QueH DGM98_01720 PF03466 LysR substrate binding domain DGM98_01720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_01725 PF03358 NADPH-dependent FMN reductase DGM98_01735 PF01717 Cobalamin-independent synthase, Catalytic domain DGM98_01735 PF08267 Cobalamin-independent synthase, N-terminal domain DGM98_01740 PF03812 2-keto-3-deoxygluconate permease DGM98_01750 PF05368 NmrA-like family DGM98_01755 PF01638 HxlR-like helix-turn-helix DGM98_01795 PF00920 Dehydratase family DGM98_01810 PF00132 Bacterial transferase hexapeptide (six repeats) DGM98_01820 PF07690 Major Facilitator Superfamily DGM98_01825 PF01966 HD domain DGM98_01825 PF11871 Domain of unknown function (DUF3391) DGM98_01845 PF00171 Aldehyde dehydrogenase family DGM98_01855 PF01494 FAD binding domain DGM98_01865 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DGM98_01865 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DGM98_01870 PF00230 Major intrinsic protein DGM98_01875 PF01266 FAD dependent oxidoreductase DGM98_01875 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DGM98_01880 PF00455 DeoR C terminal sensor domain DGM98_01880 PF08220 DeoR-like helix-turn-helix domain DGM98_01885 PF00970 Oxidoreductase FAD-binding domain DGM98_01885 PF00111 2Fe-2S iron-sulfur cluster binding domain DGM98_01890 PF00355 Rieske [2Fe-2S] domain DGM98_01895 PF01144 Coenzyme A transferase DGM98_01900 PF01144 Coenzyme A transferase DGM98_01905 PF02803 Thiolase, C-terminal domain DGM98_01905 PF00108 Thiolase, N-terminal domain DGM98_01910 PF00775 Dioxygenase DGM98_01910 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal DGM98_01920 PF10397 Adenylosuccinate lyase C-terminus DGM98_01920 PF00206 Lyase DGM98_01925 PF12146 Serine aminopeptidase, S33 DGM98_01930 PF02627 Carboxymuconolactone decarboxylase family DGM98_01940 PF01614 Bacterial transcriptional regulator DGM98_01940 PF09339 IclR helix-turn-helix domain DGM98_01950 PF07859 alpha/beta hydrolase fold DGM98_01955 PF10677 Protein of unknown function (DUF2490) DGM98_01960 PF13932 GidA associated domain DGM98_01960 PF01134 Glucose inhibited division protein A DGM98_01970 PF00291 Pyridoxal-phosphate dependent enzyme DGM98_01990 PF13649 Methyltransferase domain DGM98_02000 PF12697 Alpha/beta hydrolase family DGM98_02010 PF00155 Aminotransferase class I and II DGM98_02015 PF06968 Biotin and Thiamin Synthesis associated domain DGM98_02015 PF04055 Radical SAM superfamily DGM98_02025 PF01040 UbiA prenyltransferase family DGM98_02050 PF05819 NolX protein DGM98_02070 PF03211 Pectate lyase DGM98_02095 PF01313 Bacterial export proteins, family 3 DGM98_02100 PF00813 FliP family DGM98_02115 PF00771 FHIPEP family DGM98_02120 PF01312 FlhB HrpN YscU SpaS Family DGM98_02135 PF01514 Secretory protein of YscJ/FliF family DGM98_02150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DGM98_02150 PF02874 ATP synthase alpha/beta family, beta-barrel domain DGM98_02150 PF18269 T3SS EscN ATPase C-terminal domain DGM98_02160 PF01311 Bacterial export proteins, family 1 DGM98_02165 PF00263 Bacterial type II and III secretion system protein DGM98_02165 PF03958 Bacterial type II/III secretion system short domain DGM98_02175 PF01464 Transglycosylase SLT domain DGM98_02195 PF12795 Mechanosensitive ion channel porin domain DGM98_02195 PF12794 Mechanosensitive ion channel inner membrane domain 1 DGM98_02195 PF00924 Mechanosensitive ion channel DGM98_02200 PF00884 Sulfatase DGM98_02210 PF03109 ABC1 family DGM98_02215 PF05661 Protein of unknown function (DUF808) DGM98_02220 PF00990 Diguanylate cyclase, GGDEF domain DGM98_02225 PF08323 Starch synthase catalytic domain DGM98_02225 PF00534 Glycosyl transferases group 1 DGM98_02230 PF00128 Alpha amylase, catalytic domain DGM98_02230 PF02806 Alpha amylase, C-terminal all-beta domain DGM98_02230 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DGM98_02235 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DGM98_02235 PF11941 Domain of unknown function (DUF3459) DGM98_02235 PF00128 Alpha amylase, catalytic domain DGM98_02240 PF02446 4-alpha-glucanotransferase DGM98_02245 PF00128 Alpha amylase, catalytic domain DGM98_02255 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DGM98_02255 PF00128 Alpha amylase, catalytic domain DGM98_02260 PF13460 NAD(P)H-binding DGM98_02280 PF06903 VirK protein DGM98_02285 PF02321 Outer membrane efflux protein DGM98_02300 PF00873 AcrB/AcrD/AcrF family DGM98_02315 PF00271 Helicase conserved C-terminal domain DGM98_02315 PF00270 DEAD/DEAH box helicase DGM98_02325 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DGM98_02325 PF00364 Biotin-requiring enzyme DGM98_02335 PF02779 Transketolase, pyrimidine binding domain DGM98_02335 PF02780 Transketolase, C-terminal domain DGM98_02340 PF00676 Dehydrogenase E1 component DGM98_02355 PF03301 Tryptophan 2,3-dioxygenase DGM98_02360 PF00854 POT family DGM98_02370 PF01047 MarR family DGM98_02375 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DGM98_02380 PF04209 homogentisate 1,2-dioxygenase DGM98_02400 PF03334 Na+/H+ antiporter subunit DGM98_02405 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DGM98_02415 PF00361 Proton-conducting membrane transporter DGM98_02420 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DGM98_02425 PF13244 Domain of unknown function (DUF4040) DGM98_02425 PF00361 Proton-conducting membrane transporter DGM98_02425 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DGM98_02425 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter DGM98_02440 PF07504 Fungalysin/Thermolysin Propeptide Motif DGM98_02440 PF01483 Proprotein convertase P-domain DGM98_02440 PF01447 Thermolysin metallopeptidase, catalytic domain DGM98_02440 PF02868 Thermolysin metallopeptidase, alpha-helical domain DGM98_02450 PF01259 SAICAR synthetase DGM98_02455 PF00226 DnaJ domain DGM98_02455 PF05099 Tellurite resistance protein TerB DGM98_02465 PF00834 Ribulose-phosphate 3 epimerase family DGM98_02470 PF00583 Acetyltransferase (GNAT) family DGM98_02475 PF00781 Diacylglycerol kinase catalytic domain DGM98_02480 PF04715 Anthranilate synthase component I, N terminal region DGM98_02480 PF00425 chorismate binding enzyme DGM98_02490 PF00117 Glutamine amidotransferase class-I DGM98_02505 PF02885 Glycosyl transferase family, helical bundle domain DGM98_02505 PF00591 Glycosyl transferase family, a/b domain DGM98_02510 PF00218 Indole-3-glycerol phosphate synthase DGM98_02520 PF00027 Cyclic nucleotide-binding domain DGM98_02520 PF00325 Bacterial regulatory proteins, crp family DGM98_02525 PF02675 S-adenosylmethionine decarboxylase DGM98_02530 PF00893 Small Multidrug Resistance protein DGM98_02535 PF03232 Ubiquinone biosynthesis protein COQ7 DGM98_02540 PF00572 Ribosomal protein L13 DGM98_02545 PF00380 Ribosomal protein S9/S16 DGM98_02560 PF00293 NUDIX domain DGM98_02570 PF00210 Ferritin-like domain DGM98_02575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_02575 PF00512 His Kinase A (phospho-acceptor) domain DGM98_02575 PF01627 Hpt domain DGM98_02575 PF00072 Response regulator receiver domain DGM98_02575 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DGM98_02575 PF00672 HAMP domain DGM98_02580 PF00072 Response regulator receiver domain DGM98_02580 PF00486 Transcriptional regulatory protein, C terminal DGM98_02600 PF01521 Iron-sulphur cluster biosynthesis DGM98_02610 PF09297 NADH pyrophosphatase zinc ribbon domain DGM98_02610 PF00293 NUDIX domain DGM98_02610 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain DGM98_02615 PF17113 Regulatory signalling modulator protein AmpE DGM98_02615 PF03186 CobD/Cbib protein DGM98_02635 PF07690 Major Facilitator Superfamily DGM98_02640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_02640 PF03466 LysR substrate binding domain DGM98_02645 PF07690 Major Facilitator Superfamily DGM98_02650 PF12805 FUSC-like inner membrane protein yccS DGM98_02655 PF02843 Phosphoribosylglycinamide synthetase, C domain DGM98_02655 PF02844 Phosphoribosylglycinamide synthetase, N domain DGM98_02655 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DGM98_02665 PF02142 MGS-like domain DGM98_02665 PF01808 AICARFT/IMPCHase bienzyme DGM98_02670 PF01066 CDP-alcohol phosphatidyltransferase DGM98_02675 PF12146 Serine aminopeptidase, S33 DGM98_02675 PF12147 Putative methyltransferase DGM98_02680 PF00782 Dual specificity phosphatase, catalytic domain DGM98_02710 PF02954 Bacterial regulatory protein, Fis family DGM98_02725 PF01381 Helix-turn-helix DGM98_02755 PF00289 Biotin carboxylase, N-terminal domain DGM98_02755 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DGM98_02755 PF02785 Biotin carboxylase C-terminal domain DGM98_02765 PF00364 Biotin-requiring enzyme DGM98_02770 PF01220 Dehydroquinase class II DGM98_02775 PF11412 Disulphide bond corrector protein DsbC DGM98_02775 PF02683 Cytochrome C biogenesis protein transmembrane region DGM98_02780 PF03091 CutA1 divalent ion tolerance protein DGM98_02790 PF04231 Endonuclease I DGM98_02795 PF00166 Chaperonin 10 Kd subunit DGM98_02800 PF00118 TCP-1/cpn60 chaperonin family DGM98_02810 PF07715 TonB-dependent Receptor Plug Domain DGM98_02810 PF00593 TonB dependent receptor DGM98_02815 PF00793 DAHP synthetase I family DGM98_02830 PF08450 SMP-30/Gluconolactonase/LRE-like region DGM98_02840 PF08335 GlnD PII-uridylyltransferase DGM98_02840 PF03710 Glutamate-ammonia ligase adenylyltransferase DGM98_02845 PF02592 Putative vitamin uptake transporter DGM98_02870 PF00881 Nitroreductase family DGM98_02875 PF04264 YceI-like domain DGM98_02885 PF00328 Histidine phosphatase superfamily (branch 2) DGM98_02900 PF16957 Malonate decarboxylase, alpha subunit, transporter DGM98_02905 PF06857 Malonate decarboxylase delta subunit (MdcD) DGM98_02910 PF01039 Carboxyl transferase domain DGM98_02920 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG DGM98_02925 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DGM98_02930 PF00698 Acyl transferase domain DGM98_02940 PF07729 FCD domain DGM98_02940 PF00392 Bacterial regulatory proteins, gntR family DGM98_02980 PF07745 Glycosyl hydrolase family 53 DGM98_02985 PF00456 Transketolase, thiamine diphosphate binding domain DGM98_02985 PF17831 Pyruvate dehydrogenase E1 component middle domain DGM98_03110 PF14508 Glycosyl-hydrolase 97 N-terminal DGM98_03110 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation DGM98_03110 PF10566 Glycoside hydrolase 97 DGM98_03135 PF00106 short chain dehydrogenase DGM98_03150 PF00106 short chain dehydrogenase DGM98_03160 PF13409 Glutathione S-transferase, N-terminal domain DGM98_03195 PF00326 Prolyl oligopeptidase family DGM98_03195 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region DGM98_03200 PF07759 Protein of unknown function (DUF1615) DGM98_03235 PF00892 EamA-like transporter family DGM98_03240 PF00497 Bacterial extracellular solute-binding proteins, family 3 DGM98_03255 PF00324 Amino acid permease DGM98_03265 PF01544 CorA-like Mg2+ transporter protein DGM98_03275 PF01204 Trehalase DGM98_03290 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DGM98_03290 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DGM98_03315 PF03707 Bacterial signalling protein N terminal repeat DGM98_03315 PF00563 EAL domain DGM98_03315 PF00990 Diguanylate cyclase, GGDEF domain DGM98_03325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_03325 PF02203 Tar ligand binding domain homologue DGM98_03325 PF00672 HAMP domain DGM98_03330 PF00553 Cellulose binding domain DGM98_03330 PF00150 Cellulase (glycosyl hydrolase family 5) DGM98_03335 PF00916 Sulfate permease family DGM98_03335 PF01740 STAS domain DGM98_03340 PF00990 Diguanylate cyclase, GGDEF domain DGM98_03360 PF13632 Glycosyl transferase family group 2 DGM98_03370 PF06580 Histidine kinase DGM98_03370 PF07694 5TMR of 5TMR-LYT DGM98_03375 PF00072 Response regulator receiver domain DGM98_03375 PF04397 LytTr DNA-binding domain DGM98_03380 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DGM98_03380 PF03900 Porphobilinogen deaminase, C-terminal domain DGM98_03410 PF00326 Prolyl oligopeptidase family DGM98_03410 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DGM98_03415 PF00155 Aminotransferase class I and II DGM98_03420 PF00326 Prolyl oligopeptidase family DGM98_03420 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DGM98_03425 PF04304 Protein of unknown function (DUF454) DGM98_03435 PF01678 Diaminopimelate epimerase DGM98_03445 PF02899 Phage integrase, N-terminal SAM-like domain DGM98_03445 PF00589 Phage integrase family DGM98_03450 PF00227 Proteasome subunit DGM98_03455 PF10431 C-terminal, D2-small domain, of ClpB protein DGM98_03455 PF07724 AAA domain (Cdc48 subfamily) DGM98_03455 PF00004 ATPase family associated with various cellular activities (AAA) DGM98_03465 PF13673 Acetyltransferase (GNAT) domain DGM98_03470 PF13533 Biotin-lipoyl like DGM98_03480 PF01209 ubiE/COQ5 methyltransferase family DGM98_03485 PF03707 Bacterial signalling protein N terminal repeat DGM98_03485 PF00563 EAL domain DGM98_03485 PF00990 Diguanylate cyclase, GGDEF domain DGM98_03490 PF11838 ERAP1-like C-terminal domain DGM98_03490 PF01433 Peptidase family M1 domain DGM98_03510 PF13360 PQQ-like domain DGM98_03515 PF00497 Bacterial extracellular solute-binding proteins, family 3 DGM98_03530 PF08240 Alcohol dehydrogenase GroES-like domain DGM98_03530 PF00107 Zinc-binding dehydrogenase DGM98_03540 PF00158 Sigma-54 interaction domain DGM98_03540 PF01590 GAF domain DGM98_03540 PF02954 Bacterial regulatory protein, Fis family DGM98_03545 PF00294 pfkB family carbohydrate kinase DGM98_03555 PF04085 rod shape-determining protein MreC DGM98_03565 PF03717 Penicillin-binding Protein dimerisation domain DGM98_03565 PF00905 Penicillin binding protein transpeptidase domain DGM98_03570 PF01098 Cell cycle protein DGM98_03575 PF00295 Glycosyl hydrolases family 28 DGM98_03580 PF13406 Transglycosylase SLT domain DGM98_03585 PF05036 Sporulation related domain DGM98_03585 PF03330 Lytic transglycolase DGM98_03595 PF00768 D-alanyl-D-alanine carboxypeptidase DGM98_03595 PF07943 Penicillin-binding protein 5, C-terminal domain DGM98_03605 PF04359 Protein of unknown function (DUF493) DGM98_03610 PF03099 Biotin/lipoate A/B protein ligase family DGM98_03615 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DGM98_03615 PF04055 Radical SAM superfamily DGM98_03620 PF00595 PDZ domain DGM98_03620 PF17804 Tail specific protease N-terminal domain DGM98_03620 PF03572 Peptidase family S41 DGM98_03620 PF11818 C-terminal domain of tail specific protease (DUF3340) DGM98_03630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_03630 PF03466 LysR substrate binding domain DGM98_03640 PF00293 NUDIX domain DGM98_03640 PF01467 Cytidylyltransferase-like DGM98_03675 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DGM98_03675 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DGM98_03680 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DGM98_03680 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DGM98_03685 PF04972 BON domain DGM98_03690 PF00512 His Kinase A (phospho-acceptor) domain DGM98_03690 PF00360 Phytochrome region DGM98_03690 PF08446 PAS fold DGM98_03690 PF01590 GAF domain DGM98_03690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_03695 PF00072 Response regulator receiver domain DGM98_03700 PF00512 His Kinase A (phospho-acceptor) domain DGM98_03700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_03705 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DGM98_03755 PF03958 Bacterial type II/III secretion system short domain DGM98_03755 PF00263 Bacterial type II and III secretion system protein DGM98_03760 PF00437 Type II/IV secretion system protein DGM98_03765 PF00482 Type II secretion system (T2SS), protein F DGM98_03770 PF07963 Prokaryotic N-terminal methylation motif DGM98_03770 PF08334 Type II secretion system (T2SS), protein G DGM98_03775 PF12019 Type II transport protein GspH DGM98_03775 PF07963 Prokaryotic N-terminal methylation motif DGM98_03780 PF07963 Prokaryotic N-terminal methylation motif DGM98_03780 PF02501 Type II secretion system (T2SS), protein I DGM98_03785 PF11612 Type II secretion system (T2SS), protein J DGM98_03785 PF07963 Prokaryotic N-terminal methylation motif DGM98_03790 PF03934 Type II secretion system (T2SS), protein K DGM98_03815 PF00703 Glycosyl hydrolases family 2 DGM98_03815 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DGM98_03815 PF02837 Glycosyl hydrolases family 2, sugar binding domain DGM98_03815 PF16355 Domain of unknown function (DUF4982) DGM98_03815 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 DGM98_03830 PF00392 Bacterial regulatory proteins, gntR family DGM98_03830 PF07702 UTRA domain DGM98_03835 PF07690 Major Facilitator Superfamily DGM98_03840 PF00356 Bacterial regulatory proteins, lacI family DGM98_03845 PF01380 SIS domain DGM98_03850 PF01979 Amidohydrolase family DGM98_03865 PF01743 Poly A polymerase head domain DGM98_03865 PF01966 HD domain DGM98_03865 PF12627 Probable RNA and SrmB- binding site of polymerase A DGM98_03870 PF05199 GMC oxidoreductase DGM98_03870 PF00732 GMC oxidoreductase DGM98_03875 PF00171 Aldehyde dehydrogenase family DGM98_03880 PF02028 BCCT, betaine/carnitine/choline family transporter DGM98_03895 PF01323 DSBA-like thioredoxin domain DGM98_03905 PF00034 Cytochrome c DGM98_03910 PF01926 50S ribosome-binding GTPase DGM98_03915 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DGM98_03915 PF00753 Metallo-beta-lactamase superfamily DGM98_03915 PF10996 Beta-Casp domain DGM98_03930 PF04107 Glutamate-cysteine ligase family 2(GCS2) DGM98_03935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_03935 PF00512 His Kinase A (phospho-acceptor) domain DGM98_03935 PF00672 HAMP domain DGM98_03940 PF00072 Response regulator receiver domain DGM98_03940 PF00486 Transcriptional regulatory protein, C terminal DGM98_03955 PF02583 Metal-sensitive transcriptional repressor DGM98_03960 PF08240 Alcohol dehydrogenase GroES-like domain DGM98_03960 PF00107 Zinc-binding dehydrogenase DGM98_03965 PF04828 Glutathione-dependent formaldehyde-activating enzyme DGM98_03970 PF00756 Putative esterase DGM98_03980 PF00155 Aminotransferase class I and II DGM98_03980 PF00392 Bacterial regulatory proteins, gntR family DGM98_03985 PF02567 Phenazine biosynthesis-like protein DGM98_03990 PF00892 EamA-like transporter family DGM98_04000 PF12848 ABC transporter DGM98_04000 PF00005 ABC transporter DGM98_04010 PF00464 Serine hydroxymethyltransferase DGM98_04015 PF03477 ATP cone domain DGM98_04025 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DGM98_04025 PF01872 RibD C-terminal domain DGM98_04035 PF00677 Lumazine binding domain DGM98_04040 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DGM98_04040 PF00925 GTP cyclohydrolase II DGM98_04045 PF00885 6,7-dimethyl-8-ribityllumazine synthase DGM98_04050 PF01029 NusB family DGM98_04055 PF00586 AIR synthase related protein, N-terminal domain DGM98_04055 PF02769 AIR synthase related protein, C-terminal domain DGM98_04085 PF03814 Potassium-transporting ATPase A subunit DGM98_04095 PF02669 K+-transporting ATPase, c chain DGM98_04100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_04100 PF00512 His Kinase A (phospho-acceptor) domain DGM98_04100 PF02702 Osmosensitive K+ channel His kinase sensor domain DGM98_04100 PF13492 GAF domain DGM98_04100 PF13493 Domain of unknown function (DUF4118) DGM98_04105 PF00486 Transcriptional regulatory protein, C terminal DGM98_04105 PF00072 Response regulator receiver domain DGM98_04120 PF01565 FAD binding domain DGM98_04120 PF02913 FAD linked oxidases, C-terminal domain DGM98_04125 PF04307 LexA-binding, inner membrane-associated putative hydrolase DGM98_04130 PF02021 Uncharacterised protein family UPF0102 DGM98_04140 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DGM98_04160 PF02381 MraZ protein, putative antitoxin-like DGM98_04165 PF01795 MraW methylase family DGM98_04170 PF04999 Cell division protein FtsL DGM98_04180 PF03717 Penicillin-binding Protein dimerisation domain DGM98_04180 PF00905 Penicillin binding protein transpeptidase domain DGM98_04185 PF01225 Mur ligase family, catalytic domain DGM98_04185 PF02875 Mur ligase family, glutamate ligase domain DGM98_04185 PF08245 Mur ligase middle domain DGM98_04190 PF01225 Mur ligase family, catalytic domain DGM98_04190 PF02875 Mur ligase family, glutamate ligase domain DGM98_04190 PF08245 Mur ligase middle domain DGM98_04195 PF00953 Glycosyl transferase family 4 DGM98_04200 PF01098 Cell cycle protein DGM98_04205 PF03033 Glycosyltransferase family 28 N-terminal domain DGM98_04205 PF04101 Glycosyltransferase family 28 C-terminal domain DGM98_04210 PF08245 Mur ligase middle domain DGM98_04210 PF01225 Mur ligase family, catalytic domain DGM98_04210 PF02875 Mur ligase family, glutamate ligase domain DGM98_04215 PF01820 D-ala D-ala ligase N-terminus DGM98_04215 PF07478 D-ala D-ala ligase C-terminus DGM98_04220 PF03799 Cell division protein FtsQ DGM98_04220 PF08478 POTRA domain, FtsQ-type DGM98_04225 PF02491 SHS2 domain inserted in FTSA DGM98_04230 PF00091 Tubulin/FtsZ family, GTPase domain DGM98_04230 PF12327 FtsZ family, C-terminal domain DGM98_04235 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DGM98_04245 PF01476 LysM domain DGM98_04245 PF01551 Peptidase family M23 DGM98_04245 PF08525 Opacity-associated protein A N-terminal motif DGM98_04250 PF02810 SEC-C motif DGM98_04250 PF07517 SecA DEAD-like domain DGM98_04250 PF01043 SecA preprotein cross-linking domain DGM98_04250 PF07516 SecA Wing and Scaffold domain DGM98_04255 PF00293 NUDIX domain DGM98_04265 PF02219 Methylenetetrahydrofolate reductase DGM98_04280 PF08240 Alcohol dehydrogenase GroES-like domain DGM98_04280 PF00107 Zinc-binding dehydrogenase DGM98_04280 PF16197 Ketoacyl-synthetase C-terminal extension DGM98_04280 PF00109 Beta-ketoacyl synthase, N-terminal domain DGM98_04280 PF02801 Beta-ketoacyl synthase, C-terminal domain DGM98_04280 PF08659 KR domain DGM98_04280 PF00550 Phosphopantetheine attachment site DGM98_04280 PF14765 Polyketide synthase dehydratase DGM98_04280 PF00698 Acyl transferase domain DGM98_04285 PF09286 Pro-kumamolisin, activation domain DGM98_04285 PF00082 Subtilase family DGM98_04295 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DGM98_04300 PF00128 Alpha amylase, catalytic domain DGM98_04325 PF00685 Sulfotransferase domain DGM98_04335 PF13649 Methyltransferase domain DGM98_04340 PF05221 S-adenosyl-L-homocysteine hydrolase DGM98_04340 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DGM98_04350 PF00311 Phosphoenolpyruvate carboxylase DGM98_04370 PF00691 OmpA family DGM98_04370 PF01389 OmpA-like transmembrane domain DGM98_04385 PF00328 Histidine phosphatase superfamily (branch 2) DGM98_04390 PF02773 S-adenosylmethionine synthetase, C-terminal domain DGM98_04390 PF00438 S-adenosylmethionine synthetase, N-terminal domain DGM98_04390 PF02772 S-adenosylmethionine synthetase, central domain DGM98_04400 PF13649 Methyltransferase domain DGM98_04405 PF01207 Dihydrouridine synthase (Dus) DGM98_04415 PF00294 pfkB family carbohydrate kinase DGM98_04420 PF07662 Na+ dependent nucleoside transporter C-terminus DGM98_04420 PF07670 Nucleoside recognition DGM98_04420 PF01773 Na+ dependent nucleoside transporter N-terminus DGM98_04430 PF00248 Aldo/keto reductase family DGM98_04440 PF07715 TonB-dependent Receptor Plug Domain DGM98_04440 PF00593 TonB dependent receptor DGM98_04460 PF00528 Binding-protein-dependent transport system inner membrane component DGM98_04465 PF00005 ABC transporter DGM98_04475 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DGM98_04485 PF00005 ABC transporter DGM98_04490 PF13472 GDSL-like Lipase/Acylhydrolase family DGM98_04495 PF00072 Response regulator receiver domain DGM98_04495 PF00486 Transcriptional regulatory protein, C terminal DGM98_04500 PF08521 Two-component sensor kinase N-terminal DGM98_04500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_04500 PF00512 His Kinase A (phospho-acceptor) domain DGM98_04510 PF01219 Prokaryotic diacylglycerol kinase DGM98_04530 PF01790 Prolipoprotein diacylglyceryl transferase DGM98_04535 PF00303 Thymidylate synthase DGM98_04545 PF00186 Dihydrofolate reductase DGM98_04550 PF00158 Sigma-54 interaction domain DGM98_04555 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DGM98_04555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DGM98_04560 PF00005 ABC transporter DGM98_04565 PF00528 Binding-protein-dependent transport system inner membrane component DGM98_04575 PF00296 Luciferase-like monooxygenase DGM98_04580 PF03358 NADPH-dependent FMN reductase DGM98_04595 PF00296 Luciferase-like monooxygenase DGM98_04600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DGM98_04605 PF00528 Binding-protein-dependent transport system inner membrane component DGM98_04610 PF12911 N-terminal TM domain of oligopeptide transport permease C DGM98_04610 PF00528 Binding-protein-dependent transport system inner membrane component DGM98_04615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DGM98_04615 PF00005 ABC transporter DGM98_04620 PF00149 Calcineurin-like phosphoesterase DGM98_04625 PF04379 ApaG domain DGM98_04630 PF00398 Ribosomal RNA adenine dimethylase DGM98_04635 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DGM98_04640 PF00639 PPIC-type PPIASE domain DGM98_04640 PF09312 SurA N-terminal domain DGM98_04645 PF04453 LPS transport system D DGM98_04645 PF03968 OstA-like protein DGM98_04660 PF00850 Histone deacetylase domain DGM98_04665 PF01923 Cobalamin adenosyltransferase DGM98_04680 PF01494 FAD binding domain DGM98_04685 PF01494 FAD binding domain DGM98_04705 PF07729 FCD domain DGM98_04705 PF00392 Bacterial regulatory proteins, gntR family DGM98_04710 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DGM98_04715 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit DGM98_04715 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DGM98_04720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_04720 PF03466 LysR substrate binding domain DGM98_04725 PF00501 AMP-binding enzyme DGM98_04725 PF13193 AMP-binding enzyme C-terminal domain DGM98_04730 PF00171 Aldehyde dehydrogenase family DGM98_04735 PF00378 Enoyl-CoA hydratase/isomerase DGM98_04760 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DGM98_04760 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DGM98_04765 PF01728 FtsJ-like methyltransferase DGM98_04765 PF18125 RlmM ferredoxin-like domain DGM98_04790 PF00892 EamA-like transporter family DGM98_04800 PF00749 tRNA synthetases class I (E and Q), catalytic domain DGM98_04800 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DGM98_04820 PF00990 Diguanylate cyclase, GGDEF domain DGM98_04820 PF00072 Response regulator receiver domain DGM98_04825 PF00512 His Kinase A (phospho-acceptor) domain DGM98_04825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_04825 PF01627 Hpt domain DGM98_04825 PF00072 Response regulator receiver domain DGM98_04825 PF00672 HAMP domain DGM98_04825 PF17149 Periplasmic sensor domain found in signal transduction proteins DGM98_04830 PF00196 Bacterial regulatory proteins, luxR family DGM98_04830 PF00072 Response regulator receiver domain DGM98_04840 PF01625 Peptide methionine sulfoxide reductase DGM98_04850 PF00923 Transaldolase/Fructose-6-phosphate aldolase DGM98_04855 PF01272 Transcription elongation factor, GreA/GreB, C-term DGM98_04855 PF14760 Rnk N-terminus DGM98_04865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_04865 PF03466 LysR substrate binding domain DGM98_04870 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGM98_04870 PF13192 Thioredoxin domain DGM98_04875 PF10417 C-terminal domain of 1-Cys peroxiredoxin DGM98_04875 PF00578 AhpC/TSA family DGM98_04880 PF05175 Methyltransferase small domain DGM98_04880 PF17827 PrmC N-terminal domain DGM98_04885 PF00561 alpha/beta hydrolase fold DGM98_04900 PF00293 NUDIX domain DGM98_04905 PF01367 5'-3' exonuclease, C-terminal SAM fold DGM98_04905 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DGM98_04905 PF00476 DNA polymerase family A DGM98_04905 PF01612 3'-5' exonuclease DGM98_04935 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DGM98_04935 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DGM98_04935 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DGM98_04955 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DGM98_04960 PF02233 NAD(P) transhydrogenase beta subunit DGM98_04980 PF01063 Amino-transferase class IV DGM98_04990 PF00082 Subtilase family DGM98_04990 PF04151 Bacterial pre-peptidase C-terminal domain DGM98_04995 PF00082 Subtilase family DGM98_04995 PF04151 Bacterial pre-peptidase C-terminal domain DGM98_05000 PF04073 Aminoacyl-tRNA editing domain DGM98_05010 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain DGM98_05010 PF17189 Glycosyl hydrolase family 30 beta sandwich domain DGM98_05020 PF03358 NADPH-dependent FMN reductase DGM98_05025 PF03631 Virulence factor BrkB DGM98_05030 PF08534 Redoxin DGM98_05035 PF00708 Acylphosphatase DGM98_05045 PF03976 Polyphosphate kinase 2 (PPK2) DGM98_05050 PF00994 Probable molybdopterin binding domain DGM98_05060 PF00472 RF-1 domain DGM98_05060 PF03462 PCRF domain DGM98_05065 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DGM98_05065 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DGM98_05065 PF01488 Shikimate / quinate 5-dehydrogenase DGM98_05075 PF03550 Outer membrane lipoprotein LolB DGM98_05080 PF08544 GHMP kinases C terminal DGM98_05080 PF00288 GHMP kinases N terminal domain DGM98_05090 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DGM98_05090 PF14572 Phosphoribosyl synthetase-associated domain DGM98_05095 PF14693 Ribosomal protein TL5, C-terminal domain DGM98_05095 PF01386 Ribosomal L25p family DGM98_05100 PF01195 Peptidyl-tRNA hydrolase DGM98_05105 PF01926 50S ribosome-binding GTPase DGM98_05105 PF06071 Protein of unknown function (DUF933) DGM98_05125 PF00009 Elongation factor Tu GTP binding domain DGM98_05125 PF03144 Elongation factor Tu domain 2 DGM98_05125 PF03143 Elongation factor Tu C-terminal domain DGM98_05135 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DGM98_05140 PF02357 Transcription termination factor nusG DGM98_05140 PF00467 KOW motif DGM98_05145 PF00298 Ribosomal protein L11, RNA binding domain DGM98_05145 PF03946 Ribosomal protein L11, N-terminal domain DGM98_05150 PF00687 Ribosomal protein L1p/L10e family DGM98_05155 PF00466 Ribosomal protein L10 DGM98_05160 PF00542 Ribosomal protein L7/L12 C-terminal domain DGM98_05160 PF16320 Ribosomal protein L7/L12 dimerisation domain DGM98_05165 PF04560 RNA polymerase Rpb2, domain 7 DGM98_05165 PF10385 RNA polymerase beta subunit external 1 domain DGM98_05165 PF04565 RNA polymerase Rpb2, domain 3 DGM98_05165 PF00562 RNA polymerase Rpb2, domain 6 DGM98_05165 PF04563 RNA polymerase beta subunit DGM98_05165 PF04561 RNA polymerase Rpb2, domain 2 DGM98_05170 PF04997 RNA polymerase Rpb1, domain 1 DGM98_05170 PF00623 RNA polymerase Rpb1, domain 2 DGM98_05170 PF04983 RNA polymerase Rpb1, domain 3 DGM98_05170 PF05000 RNA polymerase Rpb1, domain 4 DGM98_05170 PF04998 RNA polymerase Rpb1, domain 5 DGM98_05175 PF00164 Ribosomal protein S12/S23 DGM98_05180 PF00177 Ribosomal protein S7p/S5e DGM98_05185 PF03144 Elongation factor Tu domain 2 DGM98_05185 PF00679 Elongation factor G C-terminus DGM98_05185 PF14492 Elongation Factor G, domain II DGM98_05185 PF03764 Elongation factor G, domain IV DGM98_05185 PF00009 Elongation factor Tu GTP binding domain DGM98_05190 PF03143 Elongation factor Tu C-terminal domain DGM98_05190 PF00009 Elongation factor Tu GTP binding domain DGM98_05190 PF03144 Elongation factor Tu domain 2 DGM98_05195 PF00338 Ribosomal protein S10p/S20e DGM98_05200 PF00297 Ribosomal protein L3 DGM98_05205 PF00573 Ribosomal protein L4/L1 family DGM98_05210 PF00276 Ribosomal protein L23 DGM98_05215 PF03947 Ribosomal Proteins L2, C-terminal domain DGM98_05215 PF00181 Ribosomal Proteins L2, RNA binding domain DGM98_05220 PF00203 Ribosomal protein S19 DGM98_05225 PF00237 Ribosomal protein L22p/L17e DGM98_05230 PF07650 KH domain DGM98_05230 PF00189 Ribosomal protein S3, C-terminal domain DGM98_05235 PF00252 Ribosomal protein L16p/L10e DGM98_05240 PF00831 Ribosomal L29 protein DGM98_05245 PF00366 Ribosomal protein S17 DGM98_05250 PF00238 Ribosomal protein L14p/L23e DGM98_05255 PF00467 KOW motif DGM98_05255 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DGM98_05260 PF00281 Ribosomal protein L5 DGM98_05260 PF00673 ribosomal L5P family C-terminus DGM98_05265 PF00253 Ribosomal protein S14p/S29e DGM98_05270 PF00410 Ribosomal protein S8 DGM98_05275 PF00347 Ribosomal protein L6 DGM98_05280 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DGM98_05285 PF00333 Ribosomal protein S5, N-terminal domain DGM98_05285 PF03719 Ribosomal protein S5, C-terminal domain DGM98_05290 PF00327 Ribosomal protein L30p/L7e DGM98_05295 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DGM98_05300 PF00344 SecY translocase DGM98_05305 PF00416 Ribosomal protein S13/S18 DGM98_05310 PF00411 Ribosomal protein S11 DGM98_05315 PF00163 Ribosomal protein S4/S9 N-terminal domain DGM98_05315 PF01479 S4 domain DGM98_05320 PF01000 RNA polymerase Rpb3/RpoA insert domain DGM98_05320 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DGM98_05320 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DGM98_05325 PF01196 Ribosomal protein L17 DGM98_05330 PF02600 Disulfide bond formation protein DsbB DGM98_05350 PF01474 Class-II DAHP synthetase family DGM98_05365 PF01425 Amidase DGM98_05375 PF03144 Elongation factor Tu domain 2 DGM98_05375 PF00009 Elongation factor Tu GTP binding domain DGM98_05375 PF00679 Elongation factor G C-terminus DGM98_05380 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DGM98_05385 PF00056 lactate/malate dehydrogenase, NAD binding domain DGM98_05385 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DGM98_05390 PF00043 Glutathione S-transferase, C-terminal domain DGM98_05390 PF02798 Glutathione S-transferase, N-terminal domain DGM98_05405 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DGM98_05405 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGM98_05410 PF08240 Alcohol dehydrogenase GroES-like domain DGM98_05410 PF00107 Zinc-binding dehydrogenase DGM98_05420 PF00691 OmpA family DGM98_05420 PF05736 OprF membrane domain DGM98_05430 PF00849 RNA pseudouridylate synthase DGM98_05440 PF00155 Aminotransferase class I and II DGM98_05450 PF00528 Binding-protein-dependent transport system inner membrane component DGM98_05455 PF00528 Binding-protein-dependent transport system inner membrane component DGM98_05460 PF17850 CysA C-terminal regulatory domain DGM98_05460 PF12857 TOBE-like domain DGM98_05460 PF00005 ABC transporter DGM98_05470 PF08240 Alcohol dehydrogenase GroES-like domain DGM98_05470 PF00107 Zinc-binding dehydrogenase DGM98_05480 PF05506 Domain of unknown function (DUF756) DGM98_05480 PF04185 Phosphoesterase family DGM98_05485 PF10459 Peptidase S46 DGM98_05490 PF00300 Histidine phosphatase superfamily (branch 1) DGM98_05495 PF08245 Mur ligase middle domain DGM98_05495 PF02875 Mur ligase family, glutamate ligase domain DGM98_05510 PF00156 Phosphoribosyl transferase domain DGM98_05515 PF04305 Protein of unknown function (DUF455) DGM98_05535 PF00149 Calcineurin-like phosphoesterase DGM98_05540 PF01569 PAP2 superfamily DGM98_05545 PF00534 Glycosyl transferases group 1 DGM98_05545 PF13439 Glycosyltransferase Family 4 DGM98_05550 PF02541 Ppx/GppA phosphatase family DGM98_05555 PF13090 Polyphosphate kinase C-terminal domain 2 DGM98_05555 PF17941 Polyphosphate kinase C-terminal domain 1 DGM98_05555 PF13089 Polyphosphate kinase N-terminal domain DGM98_05555 PF02503 Polyphosphate kinase middle domain DGM98_05560 PF00512 His Kinase A (phospho-acceptor) domain DGM98_05560 PF00989 PAS fold DGM98_05560 PF11808 Phosphate regulon sensor protein PhoR DGM98_05560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_05565 PF00072 Response regulator receiver domain DGM98_05565 PF00486 Transcriptional regulatory protein, C terminal DGM98_05570 PF13181 Tetratricopeptide repeat DGM98_05570 PF01435 Peptidase family M48 DGM98_05575 PF00462 Glutaredoxin DGM98_05585 PF00180 Isocitrate/isopropylmalate dehydrogenase DGM98_05795 PF00182 Chitinase class I DGM98_05850 PF01555 DNA methylase DGM98_05880 PF13438 Domain of unknown function (DUF4113) DGM98_05880 PF00817 impB/mucB/samB family DGM98_05880 PF11799 impB/mucB/samB family C-terminal domain DGM98_05880 PF11798 IMS family HHH motif DGM98_05885 PF00717 Peptidase S24-like DGM98_05895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_05895 PF03466 LysR substrate binding domain DGM98_05905 PF00989 PAS fold DGM98_05905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_05905 PF00512 His Kinase A (phospho-acceptor) domain DGM98_05915 PF05698 Bacterial trigger factor protein (TF) C-terminus DGM98_05915 PF05697 Bacterial trigger factor protein (TF) DGM98_05920 PF00574 Clp protease DGM98_05925 PF07724 AAA domain (Cdc48 subfamily) DGM98_05925 PF10431 C-terminal, D2-small domain, of ClpB protein DGM98_05925 PF06689 ClpX C4-type zinc finger DGM98_05930 PF05362 Lon protease (S16) C-terminal proteolytic domain DGM98_05930 PF02190 ATP-dependent protease La (LON) substrate-binding domain DGM98_05930 PF00004 ATPase family associated with various cellular activities (AAA) DGM98_05935 PF00216 Bacterial DNA-binding protein DGM98_05970 PF16123 Hydroxyacylglutathione hydrolase C-terminus DGM98_05970 PF00753 Metallo-beta-lactamase superfamily DGM98_05980 PF00075 RNase H DGM98_05985 PF00929 Exonuclease DGM98_06005 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DGM98_06015 PF12706 Beta-lactamase superfamily domain DGM98_06015 PF00753 Metallo-beta-lactamase superfamily DGM98_06020 PF04055 Radical SAM superfamily DGM98_06020 PF06463 Molybdenum Cofactor Synthesis C DGM98_06030 PF01967 MoaC family DGM98_06035 PF02597 ThiS family DGM98_06040 PF02391 MoaE protein DGM98_06055 PF12169 DNA polymerase III subunits gamma and tau domain III DGM98_06055 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DGM98_06055 PF12170 DNA polymerase III tau subunit V interacting with alpha DGM98_06060 PF02575 YbaB/EbfC DNA-binding family DGM98_06065 PF02132 RecR protein DGM98_06065 PF13662 Toprim domain DGM98_06070 PF01230 HIT domain DGM98_06080 PF11992 Domain of unknown function (DUF3488) DGM98_06080 PF13559 Domain of unknown function (DUF4129) DGM98_06080 PF01841 Transglutaminase-like superfamily DGM98_06090 PF07726 ATPase family associated with various cellular activities (AAA) DGM98_06090 PF17863 AAA lid domain DGM98_06115 PF02545 Maf-like protein DGM98_06120 PF02620 Large ribosomal RNA subunit accumulation protein YceD DGM98_06125 PF01783 Ribosomal L32p protein family DGM98_06130 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DGM98_06130 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DGM98_06140 PF00698 Acyl transferase domain DGM98_06150 PF00550 Phosphopantetheine attachment site DGM98_06155 PF00109 Beta-ketoacyl synthase, N-terminal domain DGM98_06155 PF02801 Beta-ketoacyl synthase, C-terminal domain DGM98_06160 PF04715 Anthranilate synthase component I, N terminal region DGM98_06160 PF00425 chorismate binding enzyme DGM98_06165 PF02618 YceG-like family DGM98_06170 PF09115 DNA polymerase III, delta subunit, C terminal DGM98_06190 PF02954 Bacterial regulatory protein, Fis family DGM98_06190 PF06506 Propionate catabolism activator DGM98_06190 PF00158 Sigma-54 interaction domain DGM98_06200 PF00285 Citrate synthase, C-terminal domain DGM98_06205 PF00694 Aconitase C-terminal domain DGM98_06205 PF00330 Aconitase family (aconitate hydratase) DGM98_06215 PF04303 PrpF protein DGM98_06220 PF07715 TonB-dependent Receptor Plug Domain DGM98_06220 PF00593 TonB dependent receptor DGM98_06235 PF07703 Alpha-2-macroglobulin bait region domain DGM98_06235 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain DGM98_06235 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain DGM98_06235 PF11974 Bacterial alpha-2-macroglobulin MG3 domain DGM98_06235 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain DGM98_06235 PF01835 MG2 domain DGM98_06235 PF00207 Alpha-2-macroglobulin family DGM98_06235 PF17962 Bacterial macroglobulin domain 6 DGM98_06255 PF06832 Penicillin-Binding Protein C-terminus Family DGM98_06255 PF00912 Transglycosylase DGM98_06255 PF00905 Penicillin binding protein transpeptidase domain DGM98_06265 PF08534 Redoxin DGM98_06275 PF01556 DnaJ C terminal domain DGM98_06275 PF00226 DnaJ domain DGM98_06280 PF00072 Response regulator receiver domain DGM98_06285 PF01145 SPFH domain / Band 7 family DGM98_06285 PF12221 Bacterial membrane protein N terminal DGM98_06290 PF01145 SPFH domain / Band 7 family DGM98_06305 PF00709 Adenylosuccinate synthetase DGM98_06310 PF11838 ERAP1-like C-terminal domain DGM98_06310 PF01433 Peptidase family M1 domain DGM98_06320 PF00440 Bacterial regulatory proteins, tetR family DGM98_06370 PF01555 DNA methylase DGM98_06375 PF13361 UvrD-like helicase C-terminal domain DGM98_06375 PF00580 UvrD/REP helicase N-terminal domain DGM98_06410 PF00300 Histidine phosphatase superfamily (branch 1) DGM98_06410 PF13456 Reverse transcriptase-like DGM98_06415 PF01256 Carbohydrate kinase DGM98_06425 PF00723 Glycosyl hydrolases family 15 DGM98_06440 PF07971 Glycosyl hydrolase family 92 DGM98_06440 PF17678 Glycosyl hydrolase family 92 N-terminal domain DGM98_06445 PF00106 short chain dehydrogenase DGM98_06460 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGM98_06485 PF17755 UvrA DNA-binding domain DGM98_06490 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DGM98_06490 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DGM98_06495 PF03450 CO dehydrogenase flavoprotein C-terminal domain DGM98_06495 PF00941 FAD binding domain in molybdopterin dehydrogenase DGM98_06500 PF00111 2Fe-2S iron-sulfur cluster binding domain DGM98_06500 PF01799 [2Fe-2S] binding domain DGM98_06535 PF01726 LexA DNA binding domain DGM98_06535 PF00717 Peptidase S24-like DGM98_06550 PF02811 PHP domain DGM98_06550 PF14579 Helix-hairpin-helix motif DGM98_06550 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DGM98_06550 PF07733 Bacterial DNA polymerase III alpha NTPase domain DGM98_06565 PF03169 OPT oligopeptide transporter protein DGM98_06585 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region DGM98_06585 PF07676 WD40-like Beta Propeller Repeat DGM98_06585 PF00326 Prolyl oligopeptidase family DGM98_06600 PF02311 AraC-like ligand binding domain DGM98_06600 PF12833 Helix-turn-helix domain DGM98_06625 PF00199 Catalase DGM98_06625 PF06628 Catalase-related immune-responsive DGM98_06625 PF18011 C-terminal domain found in long catalases DGM98_06630 PF00248 Aldo/keto reductase family DGM98_06635 PF00135 Carboxylesterase family DGM98_06640 PF02347 Glycine cleavage system P-protein DGM98_06645 PF07690 Major Facilitator Superfamily DGM98_06660 PF08019 Phosphoethanolamine transferase EptA/EptB DGM98_06660 PF00884 Sulfatase DGM98_06675 PF00072 Response regulator receiver domain DGM98_06675 PF00486 Transcriptional regulatory protein, C terminal DGM98_06680 PF08521 Two-component sensor kinase N-terminal DGM98_06680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_06680 PF00512 His Kinase A (phospho-acceptor) domain DGM98_06690 PF03776 Septum formation topological specificity factor MinE DGM98_06695 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DGM98_06700 PF03775 Septum formation inhibitor MinC, C-terminal domain DGM98_06700 PF05209 Septum formation inhibitor MinC, N-terminal domain DGM98_06715 PF07730 Histidine kinase DGM98_06720 PF00196 Bacterial regulatory proteins, luxR family DGM98_06720 PF00072 Response regulator receiver domain DGM98_06735 PF00730 HhH-GPD superfamily base excision DNA repair protein DGM98_06760 PF02222 ATP-grasp domain DGM98_06770 PF04377 Arginine-tRNA-protein transferase, C terminus DGM98_06770 PF04376 Arginine-tRNA-protein transferase, N terminus DGM98_06795 PF00378 Enoyl-CoA hydratase/isomerase DGM98_06810 PF00005 ABC transporter DGM98_06810 PF17755 UvrA DNA-binding domain DGM98_06810 PF17760 UvrA interaction domain DGM98_06815 PF00829 Ribosomal prokaryotic L21 protein DGM98_06820 PF01016 Ribosomal L27 protein DGM98_06825 PF01018 GTP1/OBG DGM98_06825 PF01926 50S ribosome-binding GTPase DGM98_06830 PF01649 Ribosomal protein S20 DGM98_06835 PF03023 Lipid II flippase MurJ DGM98_06840 PF01687 Riboflavin kinase DGM98_06840 PF06574 FAD synthetase DGM98_06845 PF08264 Anticodon-binding domain of tRNA DGM98_06845 PF00133 tRNA synthetases class I (I, L, M and V) DGM98_06845 PF06827 Zinc finger found in FPG and IleRS DGM98_06850 PF01252 Signal peptidase (SPase) II DGM98_06855 PF02401 LytB protein DGM98_06865 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DGM98_06865 PF06481 COX Aromatic Rich Motif DGM98_06870 PF00115 Cytochrome C and Quinol oxidase polypeptide I DGM98_06875 PF00510 Cytochrome c oxidase subunit III DGM98_06880 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DGM98_06890 PF18073 Rubredoxin metal binding domain DGM98_06895 PF05656 Protein of unknown function (DUF805) DGM98_06905 PF12833 Helix-turn-helix domain DGM98_06910 PF00183 Hsp90 protein DGM98_06910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_06920 PF01740 STAS domain DGM98_06920 PF08678 Rsbr N terminal DGM98_06925 PF01740 STAS domain DGM98_06930 PF13581 Histidine kinase-like ATPase domain DGM98_06940 PF01627 Hpt domain DGM98_06940 PF00072 Response regulator receiver domain DGM98_06940 PF17149 Periplasmic sensor domain found in signal transduction proteins DGM98_06940 PF00672 HAMP domain DGM98_06940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_06940 PF00512 His Kinase A (phospho-acceptor) domain DGM98_06945 PF00072 Response regulator receiver domain DGM98_06945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_06945 PF13188 PAS domain DGM98_06945 PF08448 PAS fold DGM98_06945 PF00512 His Kinase A (phospho-acceptor) domain DGM98_06950 PF04616 Glycosyl hydrolases family 43 DGM98_06950 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DGM98_06955 PF00593 TonB dependent receptor DGM98_06955 PF07715 TonB-dependent Receptor Plug Domain DGM98_06960 PF00085 Thioredoxin DGM98_06965 PF07237 Protein of unknown function (DUF1428) DGM98_06970 PF00512 His Kinase A (phospho-acceptor) domain DGM98_06970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_06970 PF13492 GAF domain DGM98_06970 PF02702 Osmosensitive K+ channel His kinase sensor domain DGM98_06970 PF13493 Domain of unknown function (DUF4118) DGM98_06975 PF01339 CheB methylesterase DGM98_06980 PF01739 CheR methyltransferase, SAM binding domain DGM98_06980 PF03705 CheR methyltransferase, all-alpha domain DGM98_06985 PF00072 Response regulator receiver domain DGM98_06985 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DGM98_06985 PF00672 HAMP domain DGM98_06985 PF01627 Hpt domain DGM98_06985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_06985 PF00512 His Kinase A (phospho-acceptor) domain DGM98_06990 PF00072 Response regulator receiver domain DGM98_06990 PF13426 PAS domain DGM98_06990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_06995 PF00072 Response regulator receiver domain DGM98_07005 PF06964 Alpha-L-arabinofuranosidase C-terminal domain DGM98_07010 PF01263 Aldose 1-epimerase DGM98_07015 PF01578 Cytochrome C assembly protein DGM98_07020 PF00448 SRP54-type protein, GTPase domain DGM98_07020 PF02881 SRP54-type protein, helical bundle domain DGM98_07020 PF02978 Signal peptide binding domain DGM98_07025 PF03060 Nitronate monooxygenase DGM98_07030 PF01063 Amino-transferase class IV DGM98_07035 PF00886 Ribosomal protein S16 DGM98_07040 PF05239 PRC-barrel domain DGM98_07040 PF01782 RimM N-terminal domain DGM98_07045 PF01746 tRNA (Guanine-1)-methyltransferase DGM98_07050 PF01245 Ribosomal protein L19 DGM98_07055 PF01554 MatE DGM98_07075 PF01479 S4 domain DGM98_07080 PF00141 Peroxidase DGM98_07090 PF05188 MutS domain II DGM98_07090 PF05192 MutS domain III DGM98_07090 PF05190 MutS family domain IV DGM98_07090 PF00488 MutS domain V DGM98_07090 PF01624 MutS domain I DGM98_07125 PF16355 Domain of unknown function (DUF4982) DGM98_07125 PF13287 Fn3 associated DGM98_07125 PF00703 Glycosyl hydrolases family 2 DGM98_07125 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DGM98_07125 PF02837 Glycosyl hydrolases family 2, sugar binding domain DGM98_07130 PF07745 Glycosyl hydrolase family 53 DGM98_07140 PF01381 Helix-turn-helix DGM98_07140 PF06114 IrrE N-terminal-like domain DGM98_07140 PF09856 Predicted transcriptional regulator (DUF2083) DGM98_07145 PF00171 Aldehyde dehydrogenase family DGM98_07150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DGM98_07150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DGM98_07150 PF02770 Acyl-CoA dehydrogenase, middle domain DGM98_07155 PF00378 Enoyl-CoA hydratase/isomerase DGM98_07160 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DGM98_07160 PF00378 Enoyl-CoA hydratase/isomerase DGM98_07160 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DGM98_07165 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DGM98_07165 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DGM98_07170 PF01545 Cation efflux family DGM98_07190 PF00378 Enoyl-CoA hydratase/isomerase DGM98_07190 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DGM98_07190 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DGM98_07195 PF08281 Sigma-70, region 4 DGM98_07195 PF04542 Sigma-70 region 2 DGM98_07205 PF13180 PDZ domain DGM98_07210 PF06421 GTP-binding protein LepA C-terminus DGM98_07210 PF03144 Elongation factor Tu domain 2 DGM98_07210 PF00009 Elongation factor Tu GTP binding domain DGM98_07210 PF00679 Elongation factor G C-terminus DGM98_07215 PF10502 Signal peptidase, peptidase S26 DGM98_07225 PF00035 Double-stranded RNA binding motif DGM98_07225 PF14622 Ribonuclease-III-like DGM98_07230 PF01926 50S ribosome-binding GTPase DGM98_07230 PF07650 KH domain DGM98_07235 PF11967 Recombination protein O N terminal DGM98_07235 PF02565 Recombination protein O C terminal DGM98_07245 PF05958 tRNA (Uracil-5-)-methyltransferase DGM98_07250 PF01928 CYTH domain DGM98_07255 PF01323 DSBA-like thioredoxin domain DGM98_07260 PF01593 Flavin containing amine oxidoreductase DGM98_07265 PF04244 Deoxyribodipyrimidine photo-lyase-related protein DGM98_07270 PF00933 Glycosyl hydrolase family 3 N terminal domain DGM98_07275 PF00156 Phosphoribosyl transferase domain DGM98_07280 PF01048 Phosphorylase superfamily DGM98_07285 PF00313 'Cold-shock' DNA-binding domain DGM98_07290 PF01494 FAD binding domain DGM98_07300 PF08494 DEAD/H associated DGM98_07300 PF00271 Helicase conserved C-terminal domain DGM98_07300 PF00270 DEAD/DEAH box helicase DGM98_07305 PF04675 DNA ligase N terminus DGM98_07305 PF01068 ATP dependent DNA ligase domain DGM98_07305 PF04679 ATP dependent DNA ligase C terminal region DGM98_07315 PF04679 ATP dependent DNA ligase C terminal region DGM98_07315 PF01068 ATP dependent DNA ligase domain DGM98_07315 PF04675 DNA ligase N terminus DGM98_07330 PF00990 Diguanylate cyclase, GGDEF domain DGM98_07330 PF00072 Response regulator receiver domain DGM98_07350 PF02803 Thiolase, C-terminal domain DGM98_07350 PF00108 Thiolase, N-terminal domain DGM98_07355 PF03797 Autotransporter beta-domain DGM98_07355 PF12951 Passenger-associated-transport-repeat DGM98_07355 PF00082 Subtilase family DGM98_07360 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DGM98_07360 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DGM98_07375 PF01863 Protein of unknown function DUF45 DGM98_07380 PF07043 Protein of unknown function (DUF1328) DGM98_07390 PF01258 Prokaryotic dksA/traR C4-type zinc finger DGM98_07410 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DGM98_07420 PF08274 PhnA Zinc-Ribbon DGM98_07420 PF03831 PhnA domain DGM98_07430 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DGM98_07435 PF07690 Major Facilitator Superfamily DGM98_07470 PF03706 Lysylphosphatidylglycerol synthase TM region DGM98_07470 PF09924 Uncharacterised conserved protein (DUF2156) DGM98_07480 PF01042 Endoribonuclease L-PSP DGM98_07525 PF04542 Sigma-70 region 2 DGM98_07525 PF04545 Sigma-70, region 4 DGM98_07545 PF04060 Putative Fe-S cluster DGM98_07555 PF01588 Putative tRNA binding domain DGM98_07555 PF09334 tRNA synthetases class I (M) DGM98_07570 PF00005 ABC transporter DGM98_07570 PF13732 Domain of unknown function (DUF4162) DGM98_07575 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DGM98_07580 PF00324 Amino acid permease DGM98_07585 PF02574 Homocysteine S-methyltransferase DGM98_07595 PF02592 Putative vitamin uptake transporter DGM98_07615 PF03551 Transcriptional regulator PadR-like family DGM98_07635 PF03653 Uncharacterised protein family (UPF0093) DGM98_07650 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DGM98_07655 PF01336 OB-fold nucleic acid binding domain DGM98_07655 PF14579 Helix-hairpin-helix motif DGM98_07655 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DGM98_07655 PF07733 Bacterial DNA polymerase III alpha NTPase domain DGM98_07655 PF02811 PHP domain DGM98_07660 PF01351 Ribonuclease HII DGM98_07665 PF02684 Lipid-A-disaccharide synthetase DGM98_07670 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DGM98_07670 PF00132 Bacterial transferase hexapeptide (six repeats) DGM98_07675 PF07977 FabA-like domain DGM98_07680 PF00132 Bacterial transferase hexapeptide (six repeats) DGM98_07680 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DGM98_07690 PF01103 Surface antigen DGM98_07690 PF07244 Surface antigen variable number repeat DGM98_07695 PF17820 PDZ domain DGM98_07695 PF02163 Peptidase family M50 DGM98_07700 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DGM98_07700 PF13288 DXP reductoisomerase C-terminal domain DGM98_07700 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DGM98_07710 PF01255 Putative undecaprenyl diphosphate synthase DGM98_07715 PF01765 Ribosome recycling factor DGM98_07720 PF00696 Amino acid kinase family DGM98_07725 PF00072 Response regulator receiver domain DGM98_07725 PF00990 Diguanylate cyclase, GGDEF domain DGM98_07730 PF00889 Elongation factor TS DGM98_07735 PF00318 Ribosomal protein S2 DGM98_07770 PF00557 Metallopeptidase family M24 DGM98_07775 PF01909 Nucleotidyltransferase domain DGM98_07775 PF01966 HD domain DGM98_07775 PF08335 GlnD PII-uridylyltransferase DGM98_07780 PF00132 Bacterial transferase hexapeptide (six repeats) DGM98_07780 PF14602 Hexapeptide repeat of succinyl-transferase DGM98_07780 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DGM98_07785 PF03960 ArsC family DGM98_07790 PF07687 Peptidase dimerisation domain DGM98_07790 PF01546 Peptidase family M20/M25/M40 DGM98_07795 PF00733 Asparagine synthase DGM98_07795 PF13537 Glutamine amidotransferase domain DGM98_07805 PF07715 TonB-dependent Receptor Plug Domain DGM98_07805 PF00593 TonB dependent receptor DGM98_07890 PF10124 Mu-like prophage major head subunit gpT DGM98_07910 PF04233 Phage Mu protein F like protein DGM98_07915 PF06074 Protein of unknown function (DUF935) DGM98_07920 PF03237 Terminase-like family DGM98_07940 PF01258 Prokaryotic dksA/traR C4-type zinc finger DGM98_07965 PF08765 Mor transcription activator family DGM98_08030 PF09077 Mu B transposition protein, C terminal DGM98_08030 PF13401 AAA domain DGM98_08035 PF09039 Mu DNA binding, I gamma subdomain DGM98_08035 PF02914 Bacteriophage Mu transposase DGM98_08035 PF02316 Mu DNA-binding domain DGM98_08035 PF09299 Mu transposase, C-terminal DGM98_08065 PF01804 Penicillin amidase DGM98_08070 PF00210 Ferritin-like domain DGM98_08075 PF05724 Thiopurine S-methyltransferase (TPMT) DGM98_08085 PF03989 DNA gyrase C-terminal domain, beta-propeller DGM98_08085 PF00521 DNA gyrase/topoisomerase IV, subunit A DGM98_08100 PF02321 Outer membrane efflux protein DGM98_08105 PF00529 HlyD membrane-fusion protein of T1SS DGM98_08105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGM98_08110 PF07690 Major Facilitator Superfamily DGM98_08120 PF01915 Glycosyl hydrolase family 3 C-terminal domain DGM98_08120 PF00933 Glycosyl hydrolase family 3 N terminal domain DGM98_08120 PF14310 Fibronectin type III-like domain DGM98_08130 PF00854 POT family DGM98_08155 PF12802 MarR family DGM98_08160 PF01432 Peptidase family M3 DGM98_08170 PF00255 Glutathione peroxidase DGM98_08175 PF00970 Oxidoreductase FAD-binding domain DGM98_08175 PF00175 Oxidoreductase NAD-binding domain DGM98_08180 PF00005 ABC transporter DGM98_08185 PF05681 Fumarate hydratase (Fumerase) DGM98_08185 PF05683 Fumarase C-terminus DGM98_08195 PF00484 Carbonic anhydrase DGM98_08200 PF02253 Phospholipase A1 DGM98_08210 PF00313 'Cold-shock' DNA-binding domain DGM98_08225 PF00899 ThiF family DGM98_08230 PF01026 TatD related DNase DGM98_08245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DGM98_08245 PF02770 Acyl-CoA dehydrogenase, middle domain DGM98_08245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DGM98_08255 PF00043 Glutathione S-transferase, C-terminal domain DGM98_08255 PF02798 Glutathione S-transferase, N-terminal domain DGM98_08265 PF00733 Asparagine synthase DGM98_08265 PF13537 Glutamine amidotransferase domain DGM98_08270 PF03358 NADPH-dependent FMN reductase DGM98_08275 PF00772 DnaB-like helicase N terminal domain DGM98_08275 PF03796 DnaB-like helicase C terminal domain DGM98_08280 PF00875 DNA photolyase DGM98_08280 PF03441 FAD binding domain of DNA photolyase DGM98_08285 PF00691 OmpA family DGM98_08285 PF05736 OprF membrane domain DGM98_08290 PF03466 LysR substrate binding domain DGM98_08290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_08305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGM98_08310 PF00873 AcrB/AcrD/AcrF family DGM98_08315 PF00106 short chain dehydrogenase DGM98_08320 PF02321 Outer membrane efflux protein DGM98_08325 PF00990 Diguanylate cyclase, GGDEF domain DGM98_08335 PF00990 Diguanylate cyclase, GGDEF domain DGM98_08465 PF02534 Type IV secretory system Conjugative DNA transfer DGM98_08530 PF00082 Subtilase family DGM98_08535 PF01668 SmpB protein DGM98_08540 PF03364 Polyketide cyclase / dehydrase and lipid transport DGM98_08545 PF03658 RnfH family Ubiquitin DGM98_08550 PF04355 SmpA / OmlA family DGM98_08555 PF01475 Ferric uptake regulator family DGM98_08560 PF02463 RecF/RecN/SMC N terminal domain DGM98_08565 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DGM98_08565 PF01628 HrcA protein C terminal domain DGM98_08570 PF01025 GrpE DGM98_08575 PF00012 Hsp70 protein DGM98_08580 PF00226 DnaJ domain DGM98_08580 PF01556 DnaJ C terminal domain DGM98_08580 PF00684 DnaJ central domain DGM98_08590 PF08543 Phosphomethylpyrimidine kinase DGM98_08615 PF00664 ABC transporter transmembrane region DGM98_08615 PF03412 Peptidase C39 family DGM98_08615 PF00005 ABC transporter DGM98_08620 PF03466 LysR substrate binding domain DGM98_08620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_08630 PF00005 ABC transporter DGM98_08630 PF00664 ABC transporter transmembrane region DGM98_08635 PF01205 Uncharacterized protein family UPF0029 DGM98_08640 PF03641 Possible lysine decarboxylase DGM98_08645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DGM98_08645 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGM98_08650 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DGM98_08650 PF02817 e3 binding domain DGM98_08650 PF00364 Biotin-requiring enzyme DGM98_08655 PF00676 Dehydrogenase E1 component DGM98_08655 PF16870 2-oxoglutarate dehydrogenase C-terminal DGM98_08655 PF02779 Transketolase, pyrimidine binding domain DGM98_08655 PF16078 2-oxoglutarate dehydrogenase N-terminus DGM98_08665 PF08007 Cupin superfamily protein DGM98_08680 PF00206 Lyase DGM98_08680 PF08328 Adenylosuccinate lyase C-terminal DGM98_08690 PF01595 Cyclin M transmembrane N-terminal domain DGM98_08690 PF03471 Transporter associated domain DGM98_08690 PF00571 CBS domain DGM98_08695 PF10415 Fumarase C C-terminus DGM98_08695 PF00206 Lyase DGM98_08725 PF00005 ABC transporter DGM98_08730 PF00392 Bacterial regulatory proteins, gntR family DGM98_08740 PF00255 Glutathione peroxidase DGM98_08745 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DGM98_08745 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DGM98_08750 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DGM98_08750 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DGM98_08750 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DGM98_08755 PF04102 SlyX DGM98_08770 PF00356 Bacterial regulatory proteins, lacI family DGM98_08775 PF07690 Major Facilitator Superfamily DGM98_08780 PF00294 pfkB family carbohydrate kinase DGM98_08790 PF02310 B12 binding domain DGM98_08790 PF02607 B12 binding domain DGM98_08790 PF02965 Vitamin B12 dependent methionine synthase, activation domain DGM98_08790 PF00809 Pterin binding enzyme DGM98_08790 PF02574 Homocysteine S-methyltransferase DGM98_08795 PF00809 Pterin binding enzyme DGM98_08795 PF02574 Homocysteine S-methyltransferase DGM98_08800 PF01209 ubiE/COQ5 methyltransferase family DGM98_08805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DGM98_08805 PF02770 Acyl-CoA dehydrogenase, middle domain DGM98_08805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DGM98_08815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DGM98_08815 PF02770 Acyl-CoA dehydrogenase, middle domain DGM98_08815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DGM98_08845 PF17876 Cold shock domain DGM98_08845 PF08461 Ribonuclease R winged-helix domain DGM98_08845 PF08206 Ribonuclease B OB domain DGM98_08845 PF00773 RNB domain DGM98_08845 PF00575 S1 RNA binding domain DGM98_08855 PF08032 RNA 2'-O ribose methyltransferase substrate binding DGM98_08855 PF00588 SpoU rRNA Methylase family DGM98_08860 PF00990 Diguanylate cyclase, GGDEF domain DGM98_08865 PF00929 Exonuclease DGM98_08875 PF01895 PhoU domain DGM98_08880 PF00005 ABC transporter DGM98_08885 PF00528 Binding-protein-dependent transport system inner membrane component DGM98_08890 PF00528 Binding-protein-dependent transport system inner membrane component DGM98_08895 PF12849 PBP superfamily domain DGM98_08900 PF12849 PBP superfamily domain DGM98_08915 PF00484 Carbonic anhydrase DGM98_08920 PF00916 Sulfate permease family DGM98_08920 PF01740 STAS domain DGM98_08925 PF10576 Iron-sulfur binding domain of endonuclease III DGM98_08925 PF00730 HhH-GPD superfamily base excision DNA repair protein DGM98_08925 PF00633 Helix-hairpin-helix motif DGM98_08935 PF00378 Enoyl-CoA hydratase/isomerase DGM98_08940 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DGM98_08940 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DGM98_08945 PF00293 NUDIX domain DGM98_08950 PF00581 Rhodanese-like domain DGM98_08990 PF10672 S-adenosylmethionine-dependent methyltransferase DGM98_08990 PF02926 THUMP domain DGM98_08990 PF01170 Putative RNA methylase family UPF0020 DGM98_08995 PF01513 ATP-NAD kinase DGM98_09020 PF00929 Exonuclease DGM98_09020 PF08411 Exonuclease C-terminal DGM98_09025 PF01494 FAD binding domain DGM98_09030 PF00266 Aminotransferase class-V DGM98_09040 PF06052 3-hydroxyanthranilic acid dioxygenase DGM98_09045 PF00484 Carbonic anhydrase DGM98_09090 PF00196 Bacterial regulatory proteins, luxR family DGM98_09090 PF00072 Response regulator receiver domain DGM98_09125 PF00152 tRNA synthetases class II (D, K and N) DGM98_09125 PF01336 OB-fold nucleic acid binding domain DGM98_09135 PF01521 Iron-sulphur cluster biosynthesis DGM98_09140 PF01250 Ribosomal protein S6 DGM98_09145 PF01084 Ribosomal protein S18 DGM98_09150 PF03948 Ribosomal protein L9, C-terminal domain DGM98_09150 PF01281 Ribosomal protein L9, N-terminal domain DGM98_09160 PF02463 RecF/RecN/SMC N terminal domain DGM98_09165 PF04354 ZipA, C-terminal FtsZ-binding domain DGM98_09175 PF00155 Aminotransferase class I and II DGM98_09180 PF03120 NAD-dependent DNA ligase OB-fold domain DGM98_09180 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DGM98_09180 PF12826 Helix-hairpin-helix motif DGM98_09180 PF01653 NAD-dependent DNA ligase adenylation domain DGM98_09180 PF00533 BRCA1 C Terminus (BRCT) domain DGM98_09185 PF00152 tRNA synthetases class II (D, K and N) DGM98_09200 PF01008 Initiation factor 2 subunit family DGM98_09205 PF03989 DNA gyrase C-terminal domain, beta-propeller DGM98_09205 PF00521 DNA gyrase/topoisomerase IV, subunit A DGM98_09210 PF13360 PQQ-like domain DGM98_09220 PF17391 Urocanase N-terminal domain DGM98_09220 PF01175 Urocanase Rossmann-like domain DGM98_09220 PF17392 Urocanase C-terminal domain DGM98_09230 PF00221 Aromatic amino acid lyase DGM98_09235 PF07969 Amidohydrolase family DGM98_09250 PF00392 Bacterial regulatory proteins, gntR family DGM98_09250 PF07702 UTRA domain DGM98_09275 PF01794 Ferric reductase like transmembrane component DGM98_09280 PF00174 Oxidoreductase molybdopterin binding domain DGM98_09285 PF00266 Aminotransferase class-V DGM98_09290 PF01817 Chorismate mutase type II DGM98_09290 PF00800 Prephenate dehydratase DGM98_09290 PF01842 ACT domain DGM98_09295 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DGM98_09310 PF03544 Gram-negative bacterial TonB protein C-terminal DGM98_09315 PF02403 Seryl-tRNA synthetase N-terminal domain DGM98_09315 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DGM98_09320 PF02525 Flavodoxin-like fold DGM98_09325 PF03466 LysR substrate binding domain DGM98_09325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_09340 PF00672 HAMP domain DGM98_09340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_09340 PF02203 Tar ligand binding domain homologue DGM98_09345 PF01494 FAD binding domain DGM98_09360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_09360 PF00512 His Kinase A (phospho-acceptor) domain DGM98_09360 PF08448 PAS fold DGM98_09360 PF13188 PAS domain DGM98_09360 PF00072 Response regulator receiver domain DGM98_09365 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DGM98_09365 PF00072 Response regulator receiver domain DGM98_09365 PF01627 Hpt domain DGM98_09365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_09365 PF00672 HAMP domain DGM98_09365 PF00512 His Kinase A (phospho-acceptor) domain DGM98_09375 PF06745 KaiC DGM98_09380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_09380 PF13426 PAS domain DGM98_09380 PF00072 Response regulator receiver domain DGM98_09390 PF03918 Cytochrome C biogenesis protein DGM98_09395 PF08534 Redoxin DGM98_09400 PF01578 Cytochrome C assembly protein DGM98_09400 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DGM98_09405 PF03100 CcmE DGM98_09410 PF04995 Heme exporter protein D (CcmD) DGM98_09415 PF01578 Cytochrome C assembly protein DGM98_09420 PF00082 Subtilase family DGM98_09430 PF08281 Sigma-70, region 4 DGM98_09430 PF04542 Sigma-70 region 2 DGM98_09445 PF00034 Cytochrome c DGM98_09460 PF05523 WxcM-like, C-terminal DGM98_09480 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DGM98_09485 PF01943 Polysaccharide biosynthesis protein DGM98_09490 PF00535 Glycosyl transferase family 2 DGM98_09505 PF08241 Methyltransferase domain DGM98_09540 PF00005 ABC transporter DGM98_09545 PF00664 ABC transporter transmembrane region DGM98_09545 PF00005 ABC transporter DGM98_09550 PF07690 Major Facilitator Superfamily DGM98_09555 PF00296 Luciferase-like monooxygenase DGM98_09570 PF01595 Cyclin M transmembrane N-terminal domain DGM98_09570 PF03471 Transporter associated domain DGM98_09570 PF00571 CBS domain DGM98_09585 PF01384 Phosphate transporter family DGM98_09605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_09605 PF01751 Toprim domain DGM98_09605 PF00204 DNA gyrase B DGM98_09605 PF00986 DNA gyrase B subunit, carboxyl terminus DGM98_09615 PF00117 Glutamine amidotransferase class-I DGM98_09615 PF06418 CTP synthase N-terminus DGM98_09620 PF00793 DAHP synthetase I family DGM98_09630 PF03952 Enolase, N-terminal domain DGM98_09630 PF00113 Enolase, C-terminal TIM barrel domain DGM98_09635 PF04977 Septum formation initiator DGM98_09640 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DGM98_09645 PF02542 YgbB family DGM98_09650 PF01142 tRNA pseudouridine synthase D (TruD) DGM98_09655 PF01713 Smr domain DGM98_09660 PF01975 Survival protein SurE DGM98_09670 PF09335 SNARE associated Golgi protein DGM98_09675 PF01476 LysM domain DGM98_09675 PF01551 Peptidase family M23 DGM98_09680 PF04430 Protein of unknown function (DUF498/DUF598) DGM98_09685 PF01985 CRS1 / YhbY (CRM) domain DGM98_09690 PF01728 FtsJ-like methyltransferase DGM98_09695 PF06480 FtsH Extracellular DGM98_09695 PF01434 Peptidase family M41 DGM98_09695 PF00004 ATPase family associated with various cellular activities (AAA) DGM98_09695 PF17862 AAA+ lid domain DGM98_09700 PF00809 Pterin binding enzyme DGM98_09710 PF17209 Hfq protein DGM98_09715 PF16360 GTP-binding GTPase Middle Region DGM98_09715 PF01926 50S ribosome-binding GTPase DGM98_09715 PF13167 GTP-binding GTPase N-terminal DGM98_09720 PF02464 Competence-damaged protein DGM98_09725 PF03109 ABC1 family DGM98_09730 PF01726 LexA DNA binding domain DGM98_09730 PF00717 Peptidase S24-like DGM98_09735 PF00154 recA bacterial DNA recombination protein DGM98_09745 PF02631 RecX family DGM98_09750 PF01411 tRNA synthetases class II (A) DGM98_09750 PF02272 DHHA1 domain DGM98_09750 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DGM98_09755 PF02599 Global regulator protein family DGM98_09775 PF08447 PAS fold DGM98_09775 PF13426 PAS domain DGM98_09775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_09780 PF17954 Quercetinase C-terminal cupin domain DGM98_09780 PF02678 Pirin DGM98_09785 PF03466 LysR substrate binding domain DGM98_09785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_09810 PF08543 Phosphomethylpyrimidine kinase DGM98_09825 PF13638 PIN domain DGM98_09825 PF02562 PhoH-like protein DGM98_09830 PF00578 AhpC/TSA family DGM98_09845 PF00701 Dihydrodipicolinate synthetase family DGM98_09855 PF11953 Domain of unknown function (DUF3470) DGM98_09855 PF00037 4Fe-4S binding domain DGM98_09860 PF05035 2-keto-3-deoxy-galactonokinase DGM98_09865 PF08450 SMP-30/Gluconolactonase/LRE-like region DGM98_09870 PF13378 Enolase C-terminal domain-like DGM98_09870 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DGM98_09875 PF01081 KDPG and KHG aldolase DGM98_09885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_09885 PF03466 LysR substrate binding domain DGM98_09900 PF03442 Carbohydrate binding domain X2 DGM98_09900 PF00942 Cellulose binding domain DGM98_09910 PF08533 Beta-galactosidase C-terminal domain DGM98_09910 PF08532 Beta-galactosidase trimerisation domain DGM98_09910 PF02449 Beta-galactosidase DGM98_09915 PF16338 Domain of unknown function (DUF4968) DGM98_09915 PF17137 Domain of unknown function (DUF5110) DGM98_09915 PF01055 Glycosyl hydrolases family 31 DGM98_09925 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DGM98_09925 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DGM98_09935 PF00083 Sugar (and other) transporter DGM98_09950 PF01520 N-acetylmuramoyl-L-alanine amidase DGM98_09955 PF02649 Type I GTP cyclohydrolase folE2 DGM98_09965 PF12626 Polymerase A arginine-rich C-terminus DGM98_09965 PF01743 Poly A polymerase head domain DGM98_09965 PF12627 Probable RNA and SrmB- binding site of polymerase A DGM98_09970 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DGM98_09975 PF02548 Ketopantoate hydroxymethyltransferase DGM98_09980 PF02569 Pantoate-beta-alanine ligase DGM98_09985 PF02261 Aspartate decarboxylase DGM98_09990 PF00342 Phosphoglucose isomerase DGM98_10010 PF00933 Glycosyl hydrolase family 3 N terminal domain DGM98_10010 PF01915 Glycosyl hydrolase family 3 C-terminal domain DGM98_10010 PF14310 Fibronectin type III-like domain DGM98_10020 PF00474 Sodium:solute symporter family DGM98_10025 PF01590 GAF domain DGM98_10025 PF00990 Diguanylate cyclase, GGDEF domain DGM98_10025 PF00563 EAL domain DGM98_10025 PF00360 Phytochrome region DGM98_10030 PF00150 Cellulase (glycosyl hydrolase family 5) DGM98_10030 PF02013 Cellulose or protein binding domain DGM98_10035 PF00072 Response regulator receiver domain DGM98_10045 PF04551 GcpE protein DGM98_10050 PF01569 PAP2 superfamily DGM98_10060 PF07690 Major Facilitator Superfamily DGM98_10065 PF01177 Asp/Glu/Hydantoin racemase DGM98_10075 PF00892 EamA-like transporter family DGM98_10080 PF01565 FAD binding domain DGM98_10080 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DGM98_10085 PF01180 Dihydroorotate dehydrogenase DGM98_10105 PF00171 Aldehyde dehydrogenase family DGM98_10145 PF00535 Glycosyl transferase family 2 DGM98_10150 PF14883 Hypothetical glycosyl hydrolase family 13 DGM98_10150 PF01522 Polysaccharide deacetylase DGM98_10190 PF00696 Amino acid kinase family DGM98_10190 PF13840 ACT domain DGM98_10190 PF03447 Homoserine dehydrogenase, NAD binding domain DGM98_10190 PF00742 Homoserine dehydrogenase DGM98_10190 PF01842 ACT domain DGM98_10195 PF00288 GHMP kinases N terminal domain DGM98_10195 PF08544 GHMP kinases C terminal DGM98_10205 PF00291 Pyridoxal-phosphate dependent enzyme DGM98_10205 PF14821 Threonine synthase N terminus DGM98_10215 PF00027 Cyclic nucleotide-binding domain DGM98_10215 PF13545 Crp-like helix-turn-helix domain DGM98_10220 PF13393 Histidyl-tRNA synthetase DGM98_10220 PF03129 Anticodon binding domain DGM98_10230 PF01634 ATP phosphoribosyltransferase DGM98_10230 PF08029 HisG, C-terminal domain DGM98_10235 PF00815 Histidinol dehydrogenase DGM98_10240 PF00155 Aminotransferase class I and II DGM98_10245 PF00475 Imidazoleglycerol-phosphate dehydratase DGM98_10250 PF00117 Glutamine amidotransferase class-I DGM98_10255 PF00977 Histidine biosynthesis protein DGM98_10260 PF00977 Histidine biosynthesis protein DGM98_10265 PF01502 Phosphoribosyl-AMP cyclohydrolase DGM98_10265 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DGM98_10285 PF03079 ARD/ARD' family DGM98_10290 PF00596 Class II Aldolase and Adducin N-terminal domain DGM98_10295 PF13520 Amino acid permease DGM98_10300 PF13520 Amino acid permease DGM98_10310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DGM98_10310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DGM98_10315 PF01565 FAD binding domain DGM98_10315 PF02913 FAD linked oxidases, C-terminal domain DGM98_10335 PF01132 Elongation factor P (EF-P) OB domain DGM98_10335 PF08207 Elongation factor P (EF-P) KOW-like domain DGM98_10335 PF09285 Elongation factor P, C-terminal DGM98_10340 PF00106 short chain dehydrogenase DGM98_10345 PF00682 HMGL-like DGM98_10355 PF00378 Enoyl-CoA hydratase/isomerase DGM98_10365 PF07670 Nucleoside recognition DGM98_10365 PF02421 Ferrous iron transport protein B DGM98_10365 PF07664 Ferrous iron transport protein B C terminus DGM98_10380 PF00155 Aminotransferase class I and II DGM98_10390 PF05173 Dihydrodipicolinate reductase, C-terminus DGM98_10390 PF01113 Dihydrodipicolinate reductase, N-terminus DGM98_10395 PF00117 Glutamine amidotransferase class-I DGM98_10395 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DGM98_10405 PF02142 MGS-like domain DGM98_10405 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DGM98_10405 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DGM98_10410 PF03449 Transcription elongation factor, N-terminal DGM98_10410 PF01272 Transcription elongation factor, GreA/GreB, C-term DGM98_10420 PF17768 RecJ OB domain DGM98_10420 PF01368 DHH family DGM98_10420 PF02272 DHHA1 domain DGM98_10430 PF04397 LytTr DNA-binding domain DGM98_10430 PF00072 Response regulator receiver domain DGM98_10440 PF00152 tRNA synthetases class II (D, K and N) DGM98_10440 PF01336 OB-fold nucleic acid binding domain DGM98_10445 PF00072 Response regulator receiver domain DGM98_10450 PF00512 His Kinase A (phospho-acceptor) domain DGM98_10450 PF00072 Response regulator receiver domain DGM98_10450 PF01627 Hpt domain DGM98_10450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_10455 PF00072 Response regulator receiver domain DGM98_10455 PF01627 Hpt domain DGM98_10455 PF00512 His Kinase A (phospho-acceptor) domain DGM98_10455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_10460 PF00378 Enoyl-CoA hydratase/isomerase DGM98_10465 PF00501 AMP-binding enzyme DGM98_10465 PF13193 AMP-binding enzyme C-terminal domain DGM98_10480 PF00330 Aconitase family (aconitate hydratase) DGM98_10480 PF00694 Aconitase C-terminal domain DGM98_10495 PF00330 Aconitase family (aconitate hydratase) DGM98_10495 PF11791 Aconitate B N-terminal domain DGM98_10495 PF06434 Aconitate hydratase 2 N-terminus DGM98_10500 PF00561 alpha/beta hydrolase fold DGM98_10505 PF03707 Bacterial signalling protein N terminal repeat DGM98_10505 PF00990 Diguanylate cyclase, GGDEF domain DGM98_10505 PF00563 EAL domain DGM98_10510 PF01339 CheB methylesterase DGM98_10510 PF00072 Response regulator receiver domain DGM98_10515 PF03975 CheD chemotactic sensory transduction DGM98_10520 PF01739 CheR methyltransferase, SAM binding domain DGM98_10520 PF03705 CheR methyltransferase, all-alpha domain DGM98_10525 PF00672 HAMP domain DGM98_10525 PF02203 Tar ligand binding domain homologue DGM98_10525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_10540 PF01584 CheW-like domain DGM98_10545 PF07238 PilZ domain DGM98_10545 PF07317 Flagellar regulator YcgR DGM98_10570 PF00672 HAMP domain DGM98_10570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_10570 PF02203 Tar ligand binding domain homologue DGM98_10575 PF02203 Tar ligand binding domain homologue DGM98_10575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_10575 PF00672 HAMP domain DGM98_10580 PF02203 Tar ligand binding domain homologue DGM98_10580 PF00672 HAMP domain DGM98_10580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_10585 PF02203 Tar ligand binding domain homologue DGM98_10585 PF00672 HAMP domain DGM98_10585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_10595 PF00672 HAMP domain DGM98_10595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_10595 PF02203 Tar ligand binding domain homologue DGM98_10605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_10605 PF00672 HAMP domain DGM98_10605 PF02203 Tar ligand binding domain homologue DGM98_10610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_10610 PF00672 HAMP domain DGM98_10610 PF02203 Tar ligand binding domain homologue DGM98_10615 PF00672 HAMP domain DGM98_10615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_10615 PF02203 Tar ligand binding domain homologue DGM98_10630 PF00672 HAMP domain DGM98_10630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_10630 PF02203 Tar ligand binding domain homologue DGM98_10635 PF08269 Cache domain DGM98_10635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_10645 PF00672 HAMP domain DGM98_10645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_10650 PF09078 CheY binding DGM98_10650 PF02895 Signal transducing histidine kinase, homodimeric domain DGM98_10650 PF01584 CheW-like domain DGM98_10650 PF01627 Hpt domain DGM98_10650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_10655 PF00072 Response regulator receiver domain DGM98_10665 PF01584 CheW-like domain DGM98_10670 PF13614 AAA domain DGM98_10675 PF13677 Membrane MotB of proton-channel complex MotA/MotB DGM98_10675 PF00691 OmpA family DGM98_10680 PF01618 MotA/TolQ/ExbB proton channel family DGM98_10700 PF13614 AAA domain DGM98_10765 PF01627 Hpt domain DGM98_10765 PF00072 Response regulator receiver domain DGM98_10765 PF01584 CheW-like domain DGM98_10765 PF02895 Signal transducing histidine kinase, homodimeric domain DGM98_10765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_10770 PF04344 Chemotaxis phosphatase, CheZ DGM98_10775 PF00072 Response regulator receiver domain DGM98_10780 PF04542 Sigma-70 region 2 DGM98_10780 PF04539 Sigma-70 region 3 DGM98_10780 PF04545 Sigma-70, region 4 DGM98_10785 PF10609 NUBPL iron-transfer P-loop NTPase DGM98_10790 PF00448 SRP54-type protein, GTPase domain DGM98_10800 PF00771 FHIPEP family DGM98_10805 PF01312 FlhB HrpN YscU SpaS Family DGM98_10810 PF00563 EAL domain DGM98_10810 PF03707 Bacterial signalling protein N terminal repeat DGM98_10810 PF00990 Diguanylate cyclase, GGDEF domain DGM98_10815 PF00990 Diguanylate cyclase, GGDEF domain DGM98_10830 PF01311 Bacterial export proteins, family 1 DGM98_10835 PF01313 Bacterial export proteins, family 3 DGM98_10845 PF00813 FliP family DGM98_10850 PF04347 Flagellar biosynthesis protein, FliO DGM98_10855 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DGM98_10860 PF02154 Flagellar motor switch protein FliM DGM98_10860 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DGM98_10880 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DGM98_10880 PF18269 T3SS EscN ATPase C-terminal domain DGM98_10890 PF01706 FliG C-terminal domain DGM98_10890 PF14841 FliG middle domain DGM98_10890 PF14842 FliG N-terminal domain DGM98_10895 PF01514 Secretory protein of YscJ/FliF family DGM98_10895 PF08345 Flagellar M-ring protein C-terminal DGM98_10900 PF02049 Flagellar hook-basal body complex protein FliE DGM98_10905 PF00535 Glycosyl transferase family 2 DGM98_10905 PF00534 Glycosyl transferases group 1 DGM98_10910 PF04230 Polysaccharide pyruvyl transferase DGM98_10945 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DGM98_10945 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DGM98_10955 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DGM98_10960 PF00158 Sigma-54 interaction domain DGM98_10960 PF06490 Flagellar regulatory protein FleQ DGM98_10960 PF02954 Bacterial regulatory protein, Fis family DGM98_10965 PF01339 CheB methylesterase DGM98_10965 PF00072 Response regulator receiver domain DGM98_10970 PF00309 Sigma-54 factor, Activator interacting domain (AID) DGM98_10970 PF04963 Sigma-54 factor, core binding domain DGM98_10970 PF04552 Sigma-54, DNA binding domain DGM98_10975 PF00196 Bacterial regulatory proteins, luxR family DGM98_10975 PF00072 Response regulator receiver domain DGM98_10990 PF02561 Flagellar protein FliS DGM98_10995 PF07196 Flagellin hook IN motif DGM98_10995 PF07195 Flagellar hook-associated protein 2 C-terminus DGM98_10995 PF02465 Flagellar hook-associated protein 2 N-terminus DGM98_11000 PF00700 Bacterial flagellin C-terminal helical region DGM98_11000 PF00669 Bacterial flagellin N-terminal helical region DGM98_11005 PF00700 Bacterial flagellin C-terminal helical region DGM98_11005 PF00669 Bacterial flagellin N-terminal helical region DGM98_11010 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DGM98_11010 PF07196 Flagellin hook IN motif DGM98_11015 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DGM98_11015 PF10135 Rod binding protein DGM98_11020 PF02119 Flagellar P-ring protein DGM98_11025 PF02107 Flagellar L-ring protein DGM98_11030 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DGM98_11030 PF00460 Flagella basal body rod protein DGM98_11035 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DGM98_11035 PF00460 Flagella basal body rod protein DGM98_11040 PF07559 Flagellar basal body protein FlaE DGM98_11040 PF00460 Flagella basal body rod protein DGM98_11040 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DGM98_11045 PF03963 Flagellar hook capping protein - N-terminal region DGM98_11050 PF00460 Flagella basal body rod protein DGM98_11050 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DGM98_11060 PF01584 CheW-like domain DGM98_11060 PF00072 Response regulator receiver domain DGM98_11080 PF13188 PAS domain DGM98_11080 PF13426 PAS domain DGM98_11080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_11080 PF00512 His Kinase A (phospho-acceptor) domain DGM98_11080 PF00989 PAS fold DGM98_11085 PF03707 Bacterial signalling protein N terminal repeat DGM98_11085 PF00563 EAL domain DGM98_11085 PF00990 Diguanylate cyclase, GGDEF domain DGM98_11090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_11090 PF07730 Histidine kinase DGM98_11095 PF03707 Bacterial signalling protein N terminal repeat DGM98_11095 PF00563 EAL domain DGM98_11095 PF00990 Diguanylate cyclase, GGDEF domain DGM98_11105 PF12729 Four helix bundle sensory module for signal transduction DGM98_11105 PF00672 HAMP domain DGM98_11105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_11110 PF04356 Protein of unknown function (DUF489) DGM98_11120 PF00293 NUDIX domain DGM98_11125 PF02617 ATP-dependent Clp protease adaptor protein ClpS DGM98_11130 PF00004 ATPase family associated with various cellular activities (AAA) DGM98_11130 PF07724 AAA domain (Cdc48 subfamily) DGM98_11130 PF17871 AAA lid domain DGM98_11130 PF02861 Clp amino terminal domain, pathogenicity island component DGM98_11130 PF10431 C-terminal, D2-small domain, of ClpB protein DGM98_11135 PF01176 Translation initiation factor 1A / IF-1 DGM98_11140 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DGM98_11150 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGM98_11155 PF01580 FtsK/SpoIIIE family DGM98_11155 PF09397 Ftsk gamma domain DGM98_11155 PF17854 FtsK alpha domain DGM98_11155 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DGM98_11165 PF03548 Outer membrane lipoprotein carrier protein LolA DGM98_11175 PF00004 ATPase family associated with various cellular activities (AAA) DGM98_11175 PF16193 AAA C-terminal domain DGM98_11175 PF12002 MgsA AAA+ ATPase C terminal DGM98_11180 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DGM98_11190 PF00108 Thiolase, N-terminal domain DGM98_11190 PF02803 Thiolase, C-terminal domain DGM98_11195 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DGM98_11195 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DGM98_11195 PF00378 Enoyl-CoA hydratase/isomerase DGM98_11205 PF00334 Nucleoside diphosphate kinase DGM98_11210 PF04055 Radical SAM superfamily DGM98_11220 PF13464 Domain of unknown function (DUF4115) DGM98_11230 PF13360 PQQ-like domain DGM98_11230 PF01011 PQQ enzyme repeat DGM98_11235 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DGM98_11235 PF01926 50S ribosome-binding GTPase DGM98_11240 PF00994 Probable molybdopterin binding domain DGM98_11240 PF03454 MoeA C-terminal region (domain IV) DGM98_11240 PF03453 MoeA N-terminal region (domain I and II) DGM98_11245 PF00899 ThiF family DGM98_11275 PF00107 Zinc-binding dehydrogenase DGM98_11275 PF08240 Alcohol dehydrogenase GroES-like domain DGM98_11275 PF13823 Alcohol dehydrogenase GroES-associated DGM98_11285 PF03372 Endonuclease/Exonuclease/phosphatase family DGM98_11295 PF00994 Probable molybdopterin binding domain DGM98_11295 PF03454 MoeA C-terminal region (domain IV) DGM98_11295 PF03453 MoeA N-terminal region (domain I and II) DGM98_11300 PF12804 MobA-like NTP transferase domain DGM98_11325 PF00561 alpha/beta hydrolase fold DGM98_11330 PF01566 Natural resistance-associated macrophage protein DGM98_11335 PF01325 Iron dependent repressor, N-terminal DNA binding domain DGM98_11335 PF02742 Iron dependent repressor, metal binding and dimerisation domain DGM98_11340 PF14437 MafB19-like deaminase DGM98_11345 PF00929 Exonuclease DGM98_11350 PF00924 Mechanosensitive ion channel DGM98_11350 PF05552 Conserved TM helix DGM98_11355 PF00391 PEP-utilising enzyme, mobile domain DGM98_11355 PF02896 PEP-utilising enzyme, TIM barrel domain DGM98_11355 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DGM98_11360 PF03618 Kinase/pyrophosphorylase DGM98_11380 PF01066 CDP-alcohol phosphatidyltransferase DGM98_11390 PF00561 alpha/beta hydrolase fold DGM98_11405 PF00355 Rieske [2Fe-2S] domain DGM98_11405 PF01266 FAD dependent oxidoreductase DGM98_11415 PF16921 Tex protein YqgF-like domain DGM98_11415 PF09371 Tex-like protein N-terminal domain DGM98_11415 PF00575 S1 RNA binding domain DGM98_11415 PF17674 HHH domain DGM98_11420 PF00512 His Kinase A (phospho-acceptor) domain DGM98_11420 PF00072 Response regulator receiver domain DGM98_11420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_11420 PF09308 LuxQ, periplasmic DGM98_11460 PF00034 Cytochrome c DGM98_11470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGM98_11475 PF00873 AcrB/AcrD/AcrF family DGM98_11480 PF00873 AcrB/AcrD/AcrF family DGM98_11490 PF01081 KDPG and KHG aldolase DGM98_11495 PF00920 Dehydratase family DGM98_11500 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DGM98_11505 PF02685 Glucokinase DGM98_11510 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DGM98_11510 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DGM98_11515 PF17912 MalK OB fold domain DGM98_11515 PF00005 ABC transporter DGM98_11520 PF01571 Aminomethyltransferase folate-binding domain DGM98_11530 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DGM98_11535 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DGM98_11540 PF00890 FAD binding domain DGM98_11540 PF02910 Fumarate reductase flavoprotein C-term DGM98_11550 PF13085 2Fe-2S iron-sulfur cluster binding domain DGM98_11555 PF03937 Flavinator of succinate dehydrogenase DGM98_11565 PF12704 MacB-like periplasmic core domain DGM98_11565 PF02687 FtsX-like permease family DGM98_11570 PF00005 ABC transporter DGM98_11580 PF03772 Competence protein DGM98_11580 PF00753 Metallo-beta-lactamase superfamily DGM98_11585 PF01618 MotA/TolQ/ExbB proton channel family DGM98_11590 PF02472 Biopolymer transport protein ExbD/TolR DGM98_11595 PF00664 ABC transporter transmembrane region DGM98_11595 PF00005 ABC transporter DGM98_11600 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DGM98_11605 PF02348 Cytidylyltransferase DGM98_11610 PF01451 Low molecular weight phosphotyrosine protein phosphatase DGM98_11620 PF01541 GIY-YIG catalytic domain DGM98_11620 PF02151 UvrB/uvrC motif DGM98_11620 PF08459 UvrC Helix-hairpin-helix N-terminal DGM98_11625 PF01066 CDP-alcohol phosphatidyltransferase DGM98_11650 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DGM98_11650 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DGM98_11650 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DGM98_11660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DGM98_11670 PF00581 Rhodanese-like domain DGM98_11670 PF17773 UPF0176 acylphosphatase like domain DGM98_11675 PF00196 Bacterial regulatory proteins, luxR family DGM98_11675 PF00072 Response regulator receiver domain DGM98_11680 PF12111 Polyribonucleotide phosphorylase C terminal DGM98_11680 PF10150 Ribonuclease E/G family DGM98_11680 PF00575 S1 RNA binding domain DGM98_11685 PF00849 RNA pseudouridylate synthase DGM98_11685 PF01479 S4 domain DGM98_11690 PF11737 Protein of unknown function (DUF3300) DGM98_11695 PF02535 ZIP Zinc transporter DGM98_11705 PF01329 Pterin 4 alpha carbinolamine dehydratase DGM98_11710 PF01106 NifU-like domain DGM98_11760 PF12697 Alpha/beta hydrolase family DGM98_11760 PF08241 Methyltransferase domain DGM98_11765 PF05199 GMC oxidoreductase DGM98_11765 PF00732 GMC oxidoreductase DGM98_11770 PF00106 short chain dehydrogenase DGM98_11810 PF03377 TAL effector repeat DGM98_11825 PF13406 Transglycosylase SLT domain DGM98_11855 PF05114 Protein of unknown function (DUF692) DGM98_11880 PF13581 Histidine kinase-like ATPase domain DGM98_11880 PF07536 HWE histidine kinase DGM98_11880 PF13426 PAS domain DGM98_11885 PF01494 FAD binding domain DGM98_11890 PF09335 SNARE associated Golgi protein DGM98_11905 PF07995 Glucose / Sorbosone dehydrogenase DGM98_11920 PF00072 Response regulator receiver domain DGM98_11920 PF04397 LytTr DNA-binding domain DGM98_11935 PF00082 Subtilase family DGM98_11935 PF03797 Autotransporter beta-domain DGM98_11945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGM98_11950 PF00873 AcrB/AcrD/AcrF family DGM98_11960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_11960 PF00512 His Kinase A (phospho-acceptor) domain DGM98_11960 PF08448 PAS fold DGM98_11960 PF13426 PAS domain DGM98_11960 PF00072 Response regulator receiver domain DGM98_11965 PF00196 Bacterial regulatory proteins, luxR family DGM98_11965 PF00072 Response regulator receiver domain DGM98_11970 PF12951 Passenger-associated-transport-repeat DGM98_11975 PF08448 PAS fold DGM98_11975 PF00990 Diguanylate cyclase, GGDEF domain DGM98_11975 PF00563 EAL domain DGM98_11975 PF08447 PAS fold DGM98_11995 PF05974 Domain of unknown function (DUF892) DGM98_12015 PF10414 Sirohaem synthase dimerisation region DGM98_12015 PF14824 Sirohaem biosynthesis protein central DGM98_12015 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DGM98_12030 PF05977 Transmembrane secretion effector DGM98_12035 PF07969 Amidohydrolase family DGM98_12045 PF00857 Isochorismatase family DGM98_12050 PF12833 Helix-turn-helix domain DGM98_12060 PF00072 Response regulator receiver domain DGM98_12060 PF00196 Bacterial regulatory proteins, luxR family DGM98_12075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_12075 PF03466 LysR substrate binding domain DGM98_12080 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus DGM98_12080 PF00361 Proton-conducting membrane transporter DGM98_12080 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DGM98_12085 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) DGM98_12090 PF00958 GMP synthase C terminal domain DGM98_12090 PF00117 Glutamine amidotransferase class-I DGM98_12090 PF02540 NAD synthase DGM98_12095 PF00571 CBS domain DGM98_12095 PF00478 IMP dehydrogenase / GMP reductase domain DGM98_12100 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DGM98_12100 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DGM98_12115 PF00999 Sodium/hydrogen exchanger family DGM98_12115 PF02254 TrkA-N domain DGM98_12125 PF00483 Nucleotidyl transferase DGM98_12130 PF02719 Polysaccharide biosynthesis protein DGM98_12135 PF00953 Glycosyl transferase family 4 DGM98_12140 PF18073 Rubredoxin metal binding domain DGM98_12150 PF00216 Bacterial DNA-binding protein DGM98_12155 PF00575 S1 RNA binding domain DGM98_12160 PF02224 Cytidylate kinase DGM98_12165 PF00444 Ribosomal protein L36 DGM98_12180 PF04371 Porphyromonas-type peptidyl-arginine deiminase DGM98_12185 PF00795 Carbon-nitrogen hydrolase DGM98_12210 PF00528 Binding-protein-dependent transport system inner membrane component DGM98_12215 PF00528 Binding-protein-dependent transport system inner membrane component DGM98_12235 PF00356 Bacterial regulatory proteins, lacI family DGM98_12245 PF03795 YCII-related domain DGM98_12250 PF02616 Segregation and condensation protein ScpA DGM98_12255 PF04079 Segregation and condensation complex subunit ScpB DGM98_12260 PF00849 RNA pseudouridylate synthase DGM98_12260 PF01479 S4 domain DGM98_12280 PF00795 Carbon-nitrogen hydrolase DGM98_12285 PF00155 Aminotransferase class I and II DGM98_12290 PF00005 ABC transporter DGM98_12295 PF03379 CcmB protein DGM98_12300 PF01578 Cytochrome C assembly protein DGM98_12310 PF03100 CcmE DGM98_12315 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DGM98_12315 PF01578 Cytochrome C assembly protein DGM98_12320 PF08534 Redoxin DGM98_12325 PF03918 Cytochrome C biogenesis protein DGM98_12335 PF00561 alpha/beta hydrolase fold DGM98_12340 PF00313 'Cold-shock' DNA-binding domain DGM98_12345 PF00005 ABC transporter DGM98_12345 PF00664 ABC transporter transmembrane region DGM98_12350 PF00664 ABC transporter transmembrane region DGM98_12350 PF00005 ABC transporter DGM98_12355 PF01654 Cytochrome bd terminal oxidase subunit I DGM98_12360 PF02322 Cytochrome bd terminal oxidase subunit II DGM98_12380 PF02129 X-Pro dipeptidyl-peptidase (S15 family) DGM98_12380 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain DGM98_12390 PF00171 Aldehyde dehydrogenase family DGM98_12395 PF00696 Amino acid kinase family DGM98_12395 PF01472 PUA domain DGM98_12405 PF00206 Lyase DGM98_12410 PF01118 Semialdehyde dehydrogenase, NAD binding domain DGM98_12420 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase DGM98_12420 PF00696 Amino acid kinase family DGM98_12425 PF07687 Peptidase dimerisation domain DGM98_12425 PF01546 Peptidase family M20/M25/M40 DGM98_12435 PF00764 Arginosuccinate synthase DGM98_12440 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DGM98_12440 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DGM98_12450 PF09190 DALR domain DGM98_12450 PF01406 tRNA synthetases class I (C) catalytic domain DGM98_12455 PF02657 Fe-S metabolism associated domain DGM98_12465 PF01258 Prokaryotic dksA/traR C4-type zinc finger DGM98_12470 PF01809 Putative membrane protein insertion efficiency factor DGM98_12475 PF01979 Amidohydrolase family DGM98_12480 PF01551 Peptidase family M23 DGM98_12480 PF08460 Bacterial SH3 domain DGM98_12490 PF06751 Ethanolamine ammonia lyase large subunit (EutB) DGM98_12495 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DGM98_12505 PF00753 Metallo-beta-lactamase superfamily DGM98_12530 PF00295 Glycosyl hydrolases family 28 DGM98_12540 PF13419 Haloacid dehalogenase-like hydrolase DGM98_12550 PF01979 Amidohydrolase family DGM98_12560 PF09285 Elongation factor P, C-terminal DGM98_12560 PF01132 Elongation factor P (EF-P) OB domain DGM98_12560 PF08207 Elongation factor P (EF-P) KOW-like domain DGM98_12565 PF04055 Radical SAM superfamily DGM98_12570 PF00563 EAL domain DGM98_12570 PF00990 Diguanylate cyclase, GGDEF domain DGM98_12570 PF03707 Bacterial signalling protein N terminal repeat DGM98_12570 PF13188 PAS domain DGM98_12580 PF00588 SpoU rRNA Methylase family DGM98_12585 PF00459 Inositol monophosphatase family DGM98_12590 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DGM98_12590 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DGM98_12595 PF00545 ribonuclease DGM98_12610 PF00005 ABC transporter DGM98_12610 PF16326 ABC transporter C-terminal domain DGM98_12610 PF12848 ABC transporter DGM98_12615 PF00271 Helicase conserved C-terminal domain DGM98_12615 PF00270 DEAD/DEAH box helicase DGM98_12615 PF03880 DbpA RNA binding domain DGM98_12620 PF00156 Phosphoribosyl transferase domain DGM98_12625 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DGM98_12630 PF07859 alpha/beta hydrolase fold DGM98_12635 PF14497 Glutathione S-transferase, C-terminal domain DGM98_12635 PF02798 Glutathione S-transferase, N-terminal domain DGM98_12640 PF00313 'Cold-shock' DNA-binding domain DGM98_12645 PF07152 YaeQ protein DGM98_12655 PF00563 EAL domain DGM98_12655 PF00990 Diguanylate cyclase, GGDEF domain DGM98_12655 PF00072 Response regulator receiver domain DGM98_12660 PF01435 Peptidase family M48 DGM98_12665 PF00749 tRNA synthetases class I (E and Q), catalytic domain DGM98_12670 PF00106 short chain dehydrogenase DGM98_12675 PF05233 PHB accumulation regulatory domain DGM98_12675 PF07879 PHB/PHA accumulation regulator DNA-binding domain DGM98_12695 PF08676 MutL C terminal dimerisation domain DGM98_12695 PF01119 DNA mismatch repair protein, C-terminal domain DGM98_12700 PF01520 N-acetylmuramoyl-L-alanine amidase DGM98_12700 PF11741 AMIN domain DGM98_12705 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DGM98_12710 PF03853 YjeF-related protein N-terminus DGM98_12710 PF01256 Carbohydrate kinase DGM98_12715 PF08331 Domain of unknown function (DUF1730) DGM98_12720 PF02601 Exonuclease VII, large subunit DGM98_12720 PF13742 OB-fold nucleic acid binding domain DGM98_12735 PF03781 Sulfatase-modifying factor enzyme 1 DGM98_12750 PF01612 3'-5' exonuclease DGM98_12750 PF00570 HRDC domain DGM98_12755 PF04679 ATP dependent DNA ligase C terminal region DGM98_12755 PF01068 ATP dependent DNA ligase domain DGM98_12755 PF13298 DNA polymerase Ligase (LigD) DGM98_12775 PF13356 Arm DNA-binding domain DGM98_12775 PF00589 Phage integrase family DGM98_12975 PF00772 DnaB-like helicase N terminal domain DGM98_12975 PF03796 DnaB-like helicase C terminal domain DGM98_13060 PF03837 RecT family DGM98_13095 PF01584 CheW-like domain DGM98_13100 PF00672 HAMP domain DGM98_13100 PF02743 Cache domain DGM98_13100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_13105 PF02245 Methylpurine-DNA glycosylase (MPG) DGM98_13110 PF00271 Helicase conserved C-terminal domain DGM98_13110 PF00270 DEAD/DEAH box helicase DGM98_13110 PF08494 DEAD/H associated DGM98_13130 PF04386 Stringent starvation protein B DGM98_13135 PF00043 Glutathione S-transferase, C-terminal domain DGM98_13135 PF02798 Glutathione S-transferase, N-terminal domain DGM98_13140 PF02167 Cytochrome C1 family DGM98_13145 PF00032 Cytochrome b(C-terminal)/b6/petD DGM98_13145 PF00033 Cytochrome b/b6/petB DGM98_13150 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DGM98_13150 PF00355 Rieske [2Fe-2S] domain DGM98_13160 PF01464 Transglycosylase SLT domain DGM98_13175 PF04055 Radical SAM superfamily DGM98_13175 PF01938 TRAM domain DGM98_13175 PF00919 Uncharacterized protein family UPF0004 DGM98_13180 PF02562 PhoH-like protein DGM98_13190 PF02130 Uncharacterized protein family UPF0054 DGM98_13200 PF00571 CBS domain DGM98_13200 PF03471 Transporter associated domain DGM98_13215 PF00171 Aldehyde dehydrogenase family DGM98_13220 PF00528 Binding-protein-dependent transport system inner membrane component DGM98_13225 PF00528 Binding-protein-dependent transport system inner membrane component DGM98_13235 PF00005 ABC transporter DGM98_13235 PF08402 TOBE domain DGM98_13240 PF02321 Outer membrane efflux protein DGM98_13245 PF07690 Major Facilitator Superfamily DGM98_13250 PF13533 Biotin-lipoyl like DGM98_13255 PF13416 Bacterial extracellular solute-binding protein DGM98_13260 PF00202 Aminotransferase class-III DGM98_13265 PF00120 Glutamine synthetase, catalytic domain DGM98_13275 PF00120 Glutamine synthetase, catalytic domain DGM98_13280 PF01266 FAD dependent oxidoreductase DGM98_13285 PF00990 Diguanylate cyclase, GGDEF domain DGM98_13285 PF00072 Response regulator receiver domain DGM98_13290 PF01814 Hemerythrin HHE cation binding domain DGM98_13295 PF07690 Major Facilitator Superfamily DGM98_13295 PF00083 Sugar (and other) transporter DGM98_13310 PF00384 Molybdopterin oxidoreductase DGM98_13315 PF02634 FdhD/NarQ family DGM98_13320 PF07690 Major Facilitator Superfamily DGM98_13330 PF00202 Aminotransferase class-III DGM98_13340 PF04286 Protein of unknown function (DUF445) DGM98_13345 PF01627 Hpt domain DGM98_13345 PF00072 Response regulator receiver domain DGM98_13345 PF00512 His Kinase A (phospho-acceptor) domain DGM98_13345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_13345 PF00672 HAMP domain DGM98_13345 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DGM98_13350 PF00072 Response regulator receiver domain DGM98_13365 PF07690 Major Facilitator Superfamily DGM98_13370 PF05088 Bacterial NAD-glutamate dehydrogenase DGM98_13380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGM98_13380 PF00529 HlyD membrane-fusion protein of T1SS DGM98_13385 PF00873 AcrB/AcrD/AcrF family DGM98_13390 PF00356 Bacterial regulatory proteins, lacI family DGM98_13395 PF00391 PEP-utilising enzyme, mobile domain DGM98_13395 PF02896 PEP-utilising enzyme, TIM barrel domain DGM98_13395 PF00381 PTS HPr component phosphorylation site DGM98_13395 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DGM98_13395 PF05524 PEP-utilising enzyme, N-terminal DGM98_13400 PF00294 pfkB family carbohydrate kinase DGM98_13405 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DGM98_13440 PF02355 Protein export membrane protein DGM98_13440 PF07549 SecD/SecF GG Motif DGM98_13445 PF02355 Protein export membrane protein DGM98_13445 PF13721 SecD export protein N-terminal TM region DGM98_13445 PF07549 SecD/SecF GG Motif DGM98_13450 PF02699 Preprotein translocase subunit DGM98_13455 PF01702 Queuine tRNA-ribosyltransferase DGM98_13460 PF02547 Queuosine biosynthesis protein DGM98_13500 PF00759 Glycosyl hydrolase family 9 DGM98_13500 PF02927 Cellulase N-terminal ig-like domain DGM98_13510 PF00037 4Fe-4S binding domain DGM98_13520 PF01467 Cytidylyltransferase-like DGM98_13530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_13530 PF00183 Hsp90 protein DGM98_13570 PF07715 TonB-dependent Receptor Plug Domain DGM98_13570 PF00593 TonB dependent receptor DGM98_13580 PF04616 Glycosyl hydrolases family 43 DGM98_13585 PF07532 Bacterial Ig-like domain (group 4) DGM98_13595 PF07715 TonB-dependent Receptor Plug Domain DGM98_13595 PF00593 TonB dependent receptor DGM98_13605 PF09286 Pro-kumamolisin, activation domain DGM98_13605 PF00082 Subtilase family DGM98_13635 PF13520 Amino acid permease DGM98_13650 PF01321 Creatinase/Prolidase N-terminal domain DGM98_13650 PF00557 Metallopeptidase family M24 DGM98_13655 PF00171 Aldehyde dehydrogenase family DGM98_13660 PF00701 Dihydrodipicolinate synthetase family DGM98_13665 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGM98_13665 PF04324 BFD-like [2Fe-2S] binding domain DGM98_13675 PF01266 FAD dependent oxidoreductase DGM98_13680 PF05544 Proline racemase DGM98_13690 PF00448 SRP54-type protein, GTPase domain DGM98_13690 PF02881 SRP54-type protein, helical bundle domain DGM98_13700 PF10576 Iron-sulfur binding domain of endonuclease III DGM98_13700 PF00633 Helix-hairpin-helix motif DGM98_13700 PF00730 HhH-GPD superfamily base excision DNA repair protein DGM98_13700 PF14815 NUDIX domain DGM98_13705 PF04362 Bacterial Fe(2+) trafficking DGM98_13710 PF00072 Response regulator receiver domain DGM98_13710 PF13426 PAS domain DGM98_13710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_13740 PF08212 Lipocalin-like domain DGM98_13750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DGM98_13750 PF02770 Acyl-CoA dehydrogenase, middle domain DGM98_13750 PF12806 Acetyl-CoA dehydrogenase C-terminal like DGM98_13750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DGM98_13760 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DGM98_13760 PF02779 Transketolase, pyrimidine binding domain DGM98_13760 PF02780 Transketolase, C-terminal domain DGM98_13780 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family DGM98_13785 PF16123 Hydroxyacylglutathione hydrolase C-terminus DGM98_13785 PF00753 Metallo-beta-lactamase superfamily DGM98_13790 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DGM98_13790 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DGM98_13805 PF03808 Glycosyl transferase WecB/TagA/CpsF family DGM98_13820 PF14667 Polysaccharide biosynthesis C-terminal domain DGM98_13830 PF00534 Glycosyl transferases group 1 DGM98_13830 PF13439 Glycosyltransferase Family 4 DGM98_13850 PF02397 Bacterial sugar transferase DGM98_13870 PF13411 MerR HTH family regulatory protein DGM98_13875 PF00216 Bacterial DNA-binding protein DGM98_13880 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DGM98_13880 PF03483 B3/4 domain DGM98_13880 PF03484 tRNA synthetase B5 domain DGM98_13880 PF03147 Ferredoxin-fold anticodon binding domain DGM98_13880 PF01588 Putative tRNA binding domain DGM98_13885 PF01409 tRNA synthetases class II core domain (F) DGM98_13885 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DGM98_13890 PF00453 Ribosomal protein L20 DGM98_13895 PF01632 Ribosomal protein L35 DGM98_13900 PF00707 Translation initiation factor IF-3, C-terminal domain DGM98_13900 PF05198 Translation initiation factor IF-3, N-terminal domain DGM98_13905 PF03129 Anticodon binding domain DGM98_13905 PF02824 TGS domain DGM98_13905 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DGM98_13905 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DGM98_13910 PF00356 Bacterial regulatory proteins, lacI family DGM98_13915 PF00128 Alpha amylase, catalytic domain DGM98_13915 PF00686 Starch binding domain DGM98_13920 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DGM98_13930 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation DGM98_13930 PF14508 Glycosyl-hydrolase 97 N-terminal DGM98_13930 PF10566 Glycoside hydrolase 97 DGM98_13945 PF00128 Alpha amylase, catalytic domain DGM98_13975 PF03135 CagE, TrbE, VirB family, component of type IV transporter system DGM98_13980 PF05101 Type IV secretory pathway, VirB3-like protein DGM98_13990 PF01464 Transglycosylase SLT domain DGM98_13995 PF00437 Type II/IV secretion system protein DGM98_14000 PF03743 Bacterial conjugation TrbI-like protein DGM98_14020 PF02534 Type IV secretory system Conjugative DNA transfer DGM98_14030 PF00589 Phage integrase family DGM98_14040 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system DGM98_14160 PF00271 Helicase conserved C-terminal domain DGM98_14160 PF04851 Type III restriction enzyme, res subunit DGM98_14160 PF02151 UvrB/uvrC motif DGM98_14160 PF12344 Ultra-violet resistance protein B DGM98_14160 PF17757 UvrB interaction domain DGM98_14165 PF07963 Prokaryotic N-terminal methylation motif DGM98_14165 PF00114 Pilin (bacterial filament) DGM98_14180 PF05567 Neisseria PilC beta-propeller domain DGM98_14200 PF07963 Prokaryotic N-terminal methylation motif DGM98_14205 PF11892 Domain of unknown function (DUF3412) DGM98_14205 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases DGM98_14205 PF03641 Possible lysine decarboxylase DGM98_14210 PF00593 TonB dependent receptor DGM98_14220 PF01914 MarC family integral membrane protein DGM98_14230 PF00462 Glutaredoxin DGM98_14235 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DGM98_14235 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DGM98_14240 PF02222 ATP-grasp domain DGM98_14240 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DGM98_14245 PF00731 AIR carboxylase DGM98_14255 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DGM98_14255 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DGM98_14265 PF00575 S1 RNA binding domain DGM98_14265 PF00013 KH domain DGM98_14265 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DGM98_14265 PF01138 3' exoribonuclease family, domain 1 DGM98_14265 PF03725 3' exoribonuclease family, domain 2 DGM98_14270 PF00312 Ribosomal protein S15 DGM98_14275 PF01509 TruB family pseudouridylate synthase (N terminal domain) DGM98_14275 PF09157 Pseudouridine synthase II TruB, C-terminal DGM98_14275 PF16198 tRNA pseudouridylate synthase B C-terminal domain DGM98_14280 PF02033 Ribosome-binding factor A DGM98_14285 PF00009 Elongation factor Tu GTP binding domain DGM98_14285 PF11987 Translation-initiation factor 2 DGM98_14285 PF08364 Bacterial translation initiation factor IF-2 associated region DGM98_14285 PF04760 Translation initiation factor IF-2, N-terminal region DGM98_14290 PF08529 NusA N-terminal domain DGM98_14290 PF00575 S1 RNA binding domain DGM98_14290 PF13184 NusA-like KH domain DGM98_14295 PF02576 RimP N-terminal domain DGM98_14295 PF17384 RimP C-terminal SH3 domain DGM98_14305 PF00361 Proton-conducting membrane transporter DGM98_14310 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus DGM98_14310 PF00361 Proton-conducting membrane transporter DGM98_14315 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DGM98_14315 PF00361 Proton-conducting membrane transporter DGM98_14320 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DGM98_14325 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DGM98_14330 PF12838 4Fe-4S dicluster domain DGM98_14335 PF00146 NADH dehydrogenase DGM98_14340 PF00384 Molybdopterin oxidoreductase DGM98_14340 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DGM98_14340 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal DGM98_14345 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DGM98_14345 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DGM98_14345 PF10531 SLBB domain DGM98_14355 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DGM98_14360 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DGM98_14365 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DGM98_14370 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DGM98_14385 PF00121 Triosephosphate isomerase DGM98_14390 PF00106 short chain dehydrogenase DGM98_14405 PF00990 Diguanylate cyclase, GGDEF domain DGM98_14405 PF00563 EAL domain DGM98_14405 PF03707 Bacterial signalling protein N terminal repeat DGM98_14420 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DGM98_14420 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DGM98_14420 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DGM98_14420 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DGM98_14425 PF01039 Carboxyl transferase domain DGM98_14425 PF17848 Acetyl-coA carboxylase zinc finger domain DGM98_14430 PF00290 Tryptophan synthase alpha chain DGM98_14440 PF00291 Pyridoxal-phosphate dependent enzyme DGM98_14445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_14445 PF03466 LysR substrate binding domain DGM98_14450 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DGM98_14455 PF01416 tRNA pseudouridine synthase DGM98_14470 PF02774 Semialdehyde dehydrogenase, dimerisation domain DGM98_14470 PF01118 Semialdehyde dehydrogenase, NAD binding domain DGM98_14475 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DGM98_14475 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DGM98_14480 PF01264 Chorismate synthase DGM98_14485 PF05175 Methyltransferase small domain DGM98_14490 PF02630 SCO1/SenC DGM98_14495 PF02666 Phosphatidylserine decarboxylase DGM98_14510 PF05872 Bacterial protein of unknown function (DUF853) DGM98_14515 PF00293 NUDIX domain DGM98_14530 PF01272 Transcription elongation factor, GreA/GreB, C-term DGM98_14530 PF03449 Transcription elongation factor, N-terminal DGM98_14535 PF00919 Uncharacterized protein family UPF0004 DGM98_14535 PF18693 TRAM domain DGM98_14535 PF04055 Radical SAM superfamily DGM98_14540 PF01738 Dienelactone hydrolase family DGM98_14560 PF00692 dUTPase DGM98_14570 PF10609 NUBPL iron-transfer P-loop NTPase DGM98_14575 PF07715 TonB-dependent Receptor Plug Domain DGM98_14575 PF00593 TonB dependent receptor DGM98_14590 PF01431 Peptidase family M13 DGM98_14590 PF05649 Peptidase family M13 DGM98_14595 PF01431 Peptidase family M13 DGM98_14595 PF05649 Peptidase family M13 DGM98_14610 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DGM98_14615 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGM98_14615 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DGM98_14620 PF01266 FAD dependent oxidoreductase DGM98_14625 PF04235 Protein of unknown function (DUF418) DGM98_14630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DGM98_14635 PF00877 NlpC/P60 family DGM98_14640 PF00877 NlpC/P60 family DGM98_14655 PF00375 Sodium:dicarboxylate symporter family DGM98_14660 PF00245 Alkaline phosphatase DGM98_14670 PF11734 TilS substrate C-terminal domain DGM98_14670 PF01171 PP-loop family DGM98_14670 PF09179 TilS substrate binding domain DGM98_14675 PF02609 Exonuclease VII small subunit DGM98_14680 PF00348 Polyprenyl synthetase DGM98_14685 PF14521 Lysine-specific metallo-endopeptidase DGM98_14695 PF01523 Putative modulator of DNA gyrase DGM98_14700 PF04751 Protein of unknown function (DUF615) DGM98_14705 PF01523 Putative modulator of DNA gyrase DGM98_14715 PF13502 AsmA-like C-terminal region DGM98_14715 PF13116 Protein of unknown function DGM98_14720 PF10150 Ribonuclease E/G family DGM98_14720 PF00575 S1 RNA binding domain DGM98_14725 PF02545 Maf-like protein DGM98_14730 PF04402 Protein of unknown function (DUF541) DGM98_14745 PF02590 Predicted SPOUT methyltransferase DGM98_14760 PF01467 Cytidylyltransferase-like DGM98_14775 PF08264 Anticodon-binding domain of tRNA DGM98_14775 PF13603 Leucyl-tRNA synthetase, Domain 2 DGM98_14775 PF00133 tRNA synthetases class I (I, L, M and V) DGM98_14785 PF00085 Thioredoxin DGM98_14820 PF04070 Domain of unknown function (DUF378) DGM98_14825 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DGM98_14835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_14835 PF03466 LysR substrate binding domain DGM98_14865 PF00664 ABC transporter transmembrane region DGM98_14865 PF00005 ABC transporter DGM98_14875 PF00873 AcrB/AcrD/AcrF family DGM98_14890 PF02321 Outer membrane efflux protein DGM98_14895 PF00072 Response regulator receiver domain DGM98_14895 PF00486 Transcriptional regulatory protein, C terminal DGM98_14900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_14900 PF00672 HAMP domain DGM98_14900 PF00512 His Kinase A (phospho-acceptor) domain DGM98_14905 PF00999 Sodium/hydrogen exchanger family DGM98_14910 PF00144 Beta-lactamase DGM98_14915 PF03737 Aldolase/RraA DGM98_14930 PF00990 Diguanylate cyclase, GGDEF domain DGM98_14935 PF01479 S4 domain DGM98_14935 PF00849 RNA pseudouridylate synthase DGM98_14940 PF08448 PAS fold DGM98_14940 PF00990 Diguanylate cyclase, GGDEF domain DGM98_14940 PF00563 EAL domain DGM98_14945 PF03880 DbpA RNA binding domain DGM98_14945 PF00270 DEAD/DEAH box helicase DGM98_14945 PF00271 Helicase conserved C-terminal domain DGM98_14950 PF04542 Sigma-70 region 2 DGM98_14950 PF08281 Sigma-70, region 4 DGM98_14990 PF02805 Metal binding domain of Ada DGM98_14990 PF06029 AlkA N-terminal domain DGM98_14990 PF00730 HhH-GPD superfamily base excision DNA repair protein DGM98_14990 PF12833 Helix-turn-helix domain DGM98_14995 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DGM98_14995 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DGM98_15010 PF00654 Voltage gated chloride channel DGM98_15015 PF08240 Alcohol dehydrogenase GroES-like domain DGM98_15015 PF00107 Zinc-binding dehydrogenase DGM98_15035 PF00593 TonB dependent receptor DGM98_15035 PF07715 TonB-dependent Receptor Plug Domain DGM98_15060 PF13406 Transglycosylase SLT domain DGM98_15075 PF03377 TAL effector repeat DGM98_15105 PF01483 Proprotein convertase P-domain DGM98_15105 PF00082 Subtilase family DGM98_15115 PF00248 Aldo/keto reductase family DGM98_15120 PF07690 Major Facilitator Superfamily DGM98_15125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_15125 PF03466 LysR substrate binding domain DGM98_15135 PF06719 AraC-type transcriptional regulator N-terminus DGM98_15135 PF12833 Helix-turn-helix domain DGM98_15145 PF16859 Tetracyclin repressor-like, C-terminal domain DGM98_15145 PF00440 Bacterial regulatory proteins, tetR family DGM98_15150 PF02321 Outer membrane efflux protein DGM98_15155 PF00873 AcrB/AcrD/AcrF family DGM98_15160 PF00529 HlyD membrane-fusion protein of T1SS DGM98_15160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGM98_15170 PF01475 Ferric uptake regulator family DGM98_15175 PF00749 tRNA synthetases class I (E and Q), catalytic domain DGM98_15200 PF06123 Inner membrane protein CreD DGM98_15210 PF00672 HAMP domain DGM98_15210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_15210 PF00512 His Kinase A (phospho-acceptor) domain DGM98_15215 PF00072 Response regulator receiver domain DGM98_15215 PF00486 Transcriptional regulatory protein, C terminal DGM98_15220 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DGM98_15230 PF02559 CarD-like/TRCF domain DGM98_15230 PF00270 DEAD/DEAH box helicase DGM98_15230 PF00271 Helicase conserved C-terminal domain DGM98_15230 PF17757 UvrB interaction domain DGM98_15230 PF03461 TRCF domain DGM98_15240 PF01584 CheW-like domain DGM98_15240 PF09078 CheY binding DGM98_15240 PF01627 Hpt domain DGM98_15240 PF02895 Signal transducing histidine kinase, homodimeric domain DGM98_15240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_15245 PF00672 HAMP domain DGM98_15245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_15245 PF02203 Tar ligand binding domain homologue DGM98_15250 PF01584 CheW-like domain DGM98_15255 PF00563 EAL domain DGM98_15255 PF00990 Diguanylate cyclase, GGDEF domain DGM98_15255 PF13426 PAS domain DGM98_15260 PF01739 CheR methyltransferase, SAM binding domain DGM98_15260 PF03705 CheR methyltransferase, all-alpha domain DGM98_15265 PF01339 CheB methylesterase DGM98_15265 PF00072 Response regulator receiver domain DGM98_15270 PF13091 PLD-like domain DGM98_15275 PF01431 Peptidase family M13 DGM98_15275 PF05649 Peptidase family M13 DGM98_15285 PF00300 Histidine phosphatase superfamily (branch 1) DGM98_15290 PF04493 Endonuclease V DGM98_15300 PF02678 Pirin DGM98_15300 PF05726 Pirin C-terminal cupin domain DGM98_15315 PF02678 Pirin DGM98_15315 PF05726 Pirin C-terminal cupin domain DGM98_15320 PF02554 Carbon starvation protein CstA DGM98_15320 PF13722 5TM C-terminal transporter carbon starvation CstA DGM98_15325 PF04328 Selenoprotein, putative DGM98_15375 PF13478 XdhC Rossmann domain DGM98_15375 PF02625 XdhC and CoxI family DGM98_15380 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DGM98_15380 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DGM98_15385 PF00941 FAD binding domain in molybdopterin dehydrogenase DGM98_15385 PF03450 CO dehydrogenase flavoprotein C-terminal domain DGM98_15390 PF00111 2Fe-2S iron-sulfur cluster binding domain DGM98_15390 PF01799 [2Fe-2S] binding domain DGM98_15390 PF10518 TAT (twin-arginine translocation) pathway signal sequence DGM98_15395 PF14765 Polyketide synthase dehydratase DGM98_15395 PF08659 KR domain DGM98_15395 PF00698 Acyl transferase domain DGM98_15395 PF08240 Alcohol dehydrogenase GroES-like domain DGM98_15395 PF02801 Beta-ketoacyl synthase, C-terminal domain DGM98_15395 PF00107 Zinc-binding dehydrogenase DGM98_15395 PF00550 Phosphopantetheine attachment site DGM98_15395 PF00109 Beta-ketoacyl synthase, N-terminal domain DGM98_15395 PF16197 Ketoacyl-synthetase C-terminal extension DGM98_15405 PF00436 Single-strand binding protein family DGM98_15410 PF00348 Polyprenyl synthetase DGM98_15425 PF08245 Mur ligase middle domain DGM98_15425 PF02875 Mur ligase family, glutamate ligase domain DGM98_15440 PF00696 Amino acid kinase family DGM98_15440 PF01842 ACT domain DGM98_15445 PF02567 Phenazine biosynthesis-like protein DGM98_15450 PF02567 Phenazine biosynthesis-like protein DGM98_15460 PF02566 OsmC-like protein DGM98_15465 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DGM98_15465 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DGM98_15470 PF03652 Holliday junction resolvase DGM98_15475 PF02622 Uncharacterized ACR, COG1678 DGM98_15485 PF13673 Acetyltransferase (GNAT) domain DGM98_15485 PF13302 Acetyltransferase (GNAT) domain DGM98_15485 PF03352 Methyladenine glycosylase DGM98_15485 PF00117 Glutamine amidotransferase class-I DGM98_15485 PF00958 GMP synthase C terminal domain DGM98_15505 PF00437 Type II/IV secretion system protein DGM98_15510 PF00437 Type II/IV secretion system protein DGM98_15515 PF01168 Alanine racemase, N-terminal domain DGM98_15520 PF14748 Pyrroline-5-carboxylate reductase dimerisation DGM98_15520 PF03807 NADP oxidoreductase coenzyme F420-dependent DGM98_15530 PF01551 Peptidase family M23 DGM98_15550 PF01965 DJ-1/PfpI family DGM98_15560 PF02082 Transcriptional regulator DGM98_15565 PF01458 Uncharacterized protein family (UPF0051) DGM98_15570 PF00005 ABC transporter DGM98_15575 PF01458 Uncharacterized protein family (UPF0051) DGM98_15580 PF00266 Aminotransferase class-V DGM98_15590 PF00355 Rieske [2Fe-2S] domain DGM98_15595 PF07715 TonB-dependent Receptor Plug Domain DGM98_15595 PF00593 TonB dependent receptor DGM98_15600 PF13640 2OG-Fe(II) oxygenase superfamily DGM98_15600 PF18331 PKHD-type hydroxylase C-terminal domain DGM98_15625 PF02424 ApbE family DGM98_15630 PF00258 Flavodoxin DGM98_15630 PF00667 FAD binding domain DGM98_15630 PF00175 Oxidoreductase NAD-binding domain DGM98_15655 PF01636 Phosphotransferase enzyme family DGM98_15660 PF00483 Nucleotidyl transferase DGM98_15675 PF00308 Bacterial dnaA protein DGM98_15680 PF01594 AI-2E family transporter DGM98_15690 PF00586 AIR synthase related protein, N-terminal domain DGM98_15690 PF02769 AIR synthase related protein, C-terminal domain DGM98_15700 PF00551 Formyl transferase DGM98_15720 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DGM98_15725 PF01722 BolA-like protein DGM98_15730 PF01380 SIS domain DGM98_15730 PF00571 CBS domain DGM98_15745 PF03968 OstA-like protein DGM98_15750 PF00005 ABC transporter DGM98_15755 PF04552 Sigma-54, DNA binding domain DGM98_15755 PF00309 Sigma-54 factor, Activator interacting domain (AID) DGM98_15755 PF04963 Sigma-54 factor, core binding domain DGM98_15760 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DGM98_15765 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DGM98_15770 PF07475 HPr Serine kinase C-terminal domain DGM98_15770 PF02603 HPr Serine kinase N terminus DGM98_15775 PF03668 P-loop ATPase protein family DGM98_15785 PF00381 PTS HPr component phosphorylation site DGM98_15790 PF00391 PEP-utilising enzyme, mobile domain DGM98_15790 PF05524 PEP-utilising enzyme, N-terminal DGM98_15790 PF02896 PEP-utilising enzyme, TIM barrel domain DGM98_15800 PF00571 CBS domain DGM98_15800 PF01769 Divalent cation transporter DGM98_15800 PF03448 MgtE intracellular N domain DGM98_15805 PF00756 Putative esterase DGM98_15810 PF02322 Cytochrome bd terminal oxidase subunit II DGM98_15815 PF01654 Cytochrome bd terminal oxidase subunit I DGM98_15825 PF00324 Amino acid permease DGM98_15835 PF00544 Pectate lyase DGM98_15840 PF00872 Transposase, Mutator family DGM98_15855 PF00561 alpha/beta hydrolase fold DGM98_15865 PF00196 Bacterial regulatory proteins, luxR family DGM98_15870 PF00324 Amino acid permease DGM98_15905 PF12706 Beta-lactamase superfamily domain DGM98_15915 PF04820 Tryptophan halogenase DGM98_15975 PF09278 MerR, DNA binding DGM98_15975 PF00376 MerR family regulatory protein DGM98_15980 PF07690 Major Facilitator Superfamily DGM98_15990 PF03738 Glutathionylspermidine synthase preATP-grasp DGM98_16015 PF04012 PspA/IM30 family DGM98_16025 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DGM98_16025 PF01243 Pyridoxamine 5'-phosphate oxidase DGM98_16030 PF01202 Shikimate kinase DGM98_16035 PF01761 3-dehydroquinate synthase DGM98_16045 PF01208 Uroporphyrinogen decarboxylase (URO-D) DGM98_16050 PF07690 Major Facilitator Superfamily DGM98_16055 PF00072 Response regulator receiver domain DGM98_16055 PF01627 Hpt domain DGM98_16055 PF00512 His Kinase A (phospho-acceptor) domain DGM98_16055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_16055 PF00672 HAMP domain DGM98_16055 PF17149 Periplasmic sensor domain found in signal transduction proteins DGM98_16060 PF00512 His Kinase A (phospho-acceptor) domain DGM98_16060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_16060 PF00672 HAMP domain DGM98_16060 PF17149 Periplasmic sensor domain found in signal transduction proteins DGM98_16060 PF00072 Response regulator receiver domain DGM98_16060 PF01627 Hpt domain DGM98_16070 PF00512 His Kinase A (phospho-acceptor) domain DGM98_16070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_16070 PF00072 Response regulator receiver domain DGM98_16070 PF01627 Hpt domain DGM98_16075 PF04264 YceI-like domain DGM98_16095 PF03313 Serine dehydratase alpha chain DGM98_16095 PF03315 Serine dehydratase beta chain DGM98_16100 PF12697 Alpha/beta hydrolase family DGM98_16110 PF00696 Amino acid kinase family DGM98_16110 PF03447 Homoserine dehydrogenase, NAD binding domain DGM98_16110 PF00742 Homoserine dehydrogenase DGM98_16115 PF01053 Cys/Met metabolism PLP-dependent enzyme DGM98_16120 PF00561 alpha/beta hydrolase fold DGM98_16125 PF01551 Peptidase family M23 DGM98_16125 PF08525 Opacity-associated protein A N-terminal motif DGM98_16125 PF01476 LysM domain DGM98_16130 PF16658 Class II release factor RF3, C-terminal domain DGM98_16130 PF00009 Elongation factor Tu GTP binding domain DGM98_16135 PF03006 Haemolysin-III related DGM98_16140 PF05170 AsmA family DGM98_16145 PF00478 IMP dehydrogenase / GMP reductase domain DGM98_16145 PF00571 CBS domain DGM98_16150 PF00535 Glycosyl transferase family 2 DGM98_16155 PF00912 Transglycosylase DGM98_16160 PF01430 Hsp33 protein DGM98_16170 PF07715 TonB-dependent Receptor Plug Domain DGM98_16170 PF00593 TonB dependent receptor DGM98_16180 PF00440 Bacterial regulatory proteins, tetR family DGM98_16185 PF00561 alpha/beta hydrolase fold DGM98_16190 PF09317 Domain of unknown function (DUF1974) DGM98_16190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DGM98_16190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DGM98_16220 PF01597 Glycine cleavage H-protein DGM98_16225 PF08669 Glycine cleavage T-protein C-terminal barrel domain DGM98_16225 PF01571 Aminomethyltransferase folate-binding domain DGM98_16240 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DGM98_16245 PF03819 MazG nucleotide pyrophosphohydrolase domain DGM98_16250 PF00459 Inositol monophosphatase family DGM98_16255 PF00293 NUDIX domain DGM98_16260 PF00202 Aminotransferase class-III DGM98_16265 PF04452 RNA methyltransferase DGM98_16270 PF02685 Glucokinase DGM98_16285 PF00704 Glycosyl hydrolases family 18 DGM98_16285 PF01476 LysM domain DGM98_16300 PF07691 PA14 domain DGM98_16300 PF14310 Fibronectin type III-like domain DGM98_16300 PF00933 Glycosyl hydrolase family 3 N terminal domain DGM98_16300 PF01915 Glycosyl hydrolase family 3 C-terminal domain DGM98_16310 PF01301 Glycosyl hydrolases family 35 DGM98_16315 PF13520 Amino acid permease DGM98_16325 PF11975 Family 4 glycosyl hydrolase C-terminal domain DGM98_16325 PF02056 Family 4 glycosyl hydrolase DGM98_16335 PF17678 Glycosyl hydrolase family 92 N-terminal domain DGM98_16335 PF07971 Glycosyl hydrolase family 92 DGM98_16345 PF01301 Glycosyl hydrolases family 35 DGM98_16380 PF03932 CutC family DGM98_16385 PF01112 Asparaginase DGM98_16395 PF13302 Acetyltransferase (GNAT) domain DGM98_16410 PF01584 CheW-like domain DGM98_16410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_16410 PF01627 Hpt domain DGM98_16410 PF00072 Response regulator receiver domain DGM98_16410 PF02895 Signal transducing histidine kinase, homodimeric domain DGM98_16415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_16415 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DGM98_16420 PF01584 CheW-like domain DGM98_16425 PF00072 Response regulator receiver domain DGM98_16430 PF00072 Response regulator receiver domain DGM98_16435 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DGM98_16435 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DGM98_16445 PF03747 ADP-ribosylglycohydrolase DGM98_16450 PF00814 Glycoprotease family DGM98_16455 PF13307 Helicase C-terminal domain DGM98_16455 PF04851 Type III restriction enzyme, res subunit DGM98_16465 PF00912 Transglycosylase DGM98_16465 PF00905 Penicillin binding protein transpeptidase domain DGM98_16465 PF14814 Bifunctional transglycosylase second domain DGM98_16470 PF01501 Glycosyl transferase family 8 DGM98_16470 PF00535 Glycosyl transferase family 2 DGM98_16490 PF13291 ACT domain DGM98_16490 PF02824 TGS domain DGM98_16490 PF04607 Region found in RelA / SpoT proteins DGM98_16495 PF08042 PqqA family DGM98_16500 PF12706 Beta-lactamase superfamily domain DGM98_16505 PF03070 TENA/THI-4/PQQC family DGM98_16510 PF05402 Coenzyme PQQ synthesis protein D (PqqD) DGM98_16515 PF13186 Iron-sulfur cluster-binding domain DGM98_16515 PF04055 Radical SAM superfamily DGM98_16530 PF02685 Glucokinase DGM98_16545 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DGM98_16545 PF00271 Helicase conserved C-terminal domain DGM98_16545 PF00270 DEAD/DEAH box helicase DGM98_16545 PF11898 Domain of unknown function (DUF3418) DGM98_16545 PF04408 Helicase associated domain (HA2) DGM98_16550 PF00210 Ferritin-like domain DGM98_16555 PF00570 HRDC domain DGM98_16555 PF16124 RecQ zinc-binding DGM98_16555 PF00271 Helicase conserved C-terminal domain DGM98_16555 PF00270 DEAD/DEAH box helicase DGM98_16555 PF09382 RQC domain DGM98_16595 PF00672 HAMP domain DGM98_16595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_16600 PF01810 LysE type translocator DGM98_16605 PF03466 LysR substrate binding domain DGM98_16605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_16615 PF13581 Histidine kinase-like ATPase domain DGM98_16615 PF13426 PAS domain DGM98_16615 PF07536 HWE histidine kinase DGM98_16620 PF06508 Queuosine biosynthesis protein QueC DGM98_16630 PF04055 Radical SAM superfamily DGM98_16640 PF00691 OmpA family DGM98_16645 PF07676 WD40-like Beta Propeller Repeat DGM98_16645 PF04052 TolB amino-terminal domain DGM98_16655 PF02472 Biopolymer transport protein ExbD/TolR DGM98_16660 PF01618 MotA/TolQ/ExbB proton channel family DGM98_16665 PF03061 Thioesterase superfamily DGM98_16670 PF17864 RuvB AAA lid domain DGM98_16670 PF05491 RuvB C-terminal winged helix domain DGM98_16670 PF05496 Holliday junction DNA helicase RuvB P-loop domain DGM98_16680 PF02705 K+ potassium transporter DGM98_16685 PF07499 RuvA, C-terminal domain DGM98_16685 PF01330 RuvA N terminal domain DGM98_16690 PF02075 Crossover junction endodeoxyribonuclease RuvC DGM98_16695 PF01709 Transcriptional regulator DGM98_16710 PF01336 OB-fold nucleic acid binding domain DGM98_16710 PF00152 tRNA synthetases class II (D, K and N) DGM98_16710 PF02938 GAD domain DGM98_16725 PF07690 Major Facilitator Superfamily DGM98_16735 PF04185 Phosphoesterase family DGM98_16735 PF05506 Domain of unknown function (DUF756) DGM98_16755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_16755 PF03466 LysR substrate binding domain DGM98_16765 PF12848 ABC transporter DGM98_16765 PF00005 ABC transporter DGM98_16770 PF07715 TonB-dependent Receptor Plug Domain DGM98_16770 PF00593 TonB dependent receptor DGM98_16785 PF00593 TonB dependent receptor DGM98_16785 PF07715 TonB-dependent Receptor Plug Domain DGM98_16790 PF07715 TonB-dependent Receptor Plug Domain DGM98_16790 PF00593 TonB dependent receptor DGM98_16795 PF00067 Cytochrome P450 DGM98_16805 PF00999 Sodium/hydrogen exchanger family DGM98_16805 PF02254 TrkA-N domain DGM98_16815 PF00593 TonB dependent receptor DGM98_16815 PF07715 TonB-dependent Receptor Plug Domain DGM98_16815 PF07660 Secretin and TonB N terminus short domain DGM98_16825 PF06276 Ferric iron reductase FhuF-like transporter DGM98_16825 PF04183 IucA / IucC family DGM98_16830 PF07690 Major Facilitator Superfamily DGM98_16835 PF06276 Ferric iron reductase FhuF-like transporter DGM98_16835 PF04183 IucA / IucC family DGM98_16840 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DGM98_16840 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DGM98_16855 PF02654 Cobalamin-5-phosphate synthase DGM98_16865 PF02277 Phosphoribosyltransferase DGM98_16870 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DGM98_16875 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DGM98_16875 PF07685 CobB/CobQ-like glutamine amidotransferase domain DGM98_16880 PF00155 Aminotransferase class I and II DGM98_16885 PF17113 Regulatory signalling modulator protein AmpE DGM98_16885 PF03186 CobD/Cbib protein DGM98_16890 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DGM98_16890 PF12557 Cob(I)alamin adenosyltransferase N terminal DGM98_16910 PF07715 TonB-dependent Receptor Plug Domain DGM98_16910 PF00593 TonB dependent receptor DGM98_16915 PF00004 ATPase family associated with various cellular activities (AAA) DGM98_16915 PF07724 AAA domain (Cdc48 subfamily) DGM98_16915 PF17871 AAA lid domain DGM98_16915 PF02861 Clp amino terminal domain, pathogenicity island component DGM98_16915 PF10431 C-terminal, D2-small domain, of ClpB protein DGM98_16920 PF00005 ABC transporter DGM98_16925 PF00528 Binding-protein-dependent transport system inner membrane component DGM98_16930 PF09084 NMT1/THI5 like DGM98_16935 PF00248 Aldo/keto reductase family DGM98_16940 PF00296 Luciferase-like monooxygenase DGM98_16945 PF07715 TonB-dependent Receptor Plug Domain DGM98_16945 PF00593 TonB dependent receptor DGM98_16950 PF01541 GIY-YIG catalytic domain DGM98_16985 PF07715 TonB-dependent Receptor Plug Domain DGM98_16985 PF00593 TonB dependent receptor DGM98_16990 PF02358 Trehalose-phosphatase DGM98_16995 PF00723 Glycosyl hydrolases family 15 DGM98_17000 PF00982 Glycosyltransferase family 20 DGM98_17005 PF01011 PQQ enzyme repeat DGM98_17015 PF02203 Tar ligand binding domain homologue DGM98_17015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_17015 PF00672 HAMP domain DGM98_17020 PF04134 Protein of unknown function, DUF393 DGM98_17030 PF02578 Multi-copper polyphenol oxidoreductase laccase DGM98_17035 PF00849 RNA pseudouridylate synthase DGM98_17040 PF13525 Outer membrane lipoprotein DGM98_17050 PF02540 NAD synthase DGM98_17050 PF00795 Carbon-nitrogen hydrolase DGM98_17065 PF02629 CoA binding domain DGM98_17065 PF00549 CoA-ligase DGM98_17070 PF08442 ATP-grasp domain DGM98_17070 PF00549 CoA-ligase DGM98_17075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_17075 PF00512 His Kinase A (phospho-acceptor) domain DGM98_17080 PF00072 Response regulator receiver domain DGM98_17080 PF00158 Sigma-54 interaction domain DGM98_17080 PF02954 Bacterial regulatory protein, Fis family DGM98_17090 PF00437 Type II/IV secretion system protein DGM98_17090 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DGM98_17095 PF07963 Prokaryotic N-terminal methylation motif DGM98_17095 PF00114 Pilin (bacterial filament) DGM98_17105 PF00482 Type II secretion system (T2SS), protein F DGM98_17110 PF06750 Bacterial Peptidase A24 N-terminal domain DGM98_17110 PF01478 Type IV leader peptidase family DGM98_17115 PF01121 Dephospho-CoA kinase DGM98_17140 PF00512 His Kinase A (phospho-acceptor) domain DGM98_17140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_17140 PF00989 PAS fold DGM98_17140 PF11808 Phosphate regulon sensor protein PhoR DGM98_17145 PF00072 Response regulator receiver domain DGM98_17145 PF00486 Transcriptional regulatory protein, C terminal DGM98_17155 PF08443 RimK-like ATP-grasp domain DGM98_17155 PF18030 RimK PreATP-grasp domain DGM98_17160 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DGM98_17160 PF00128 Alpha amylase, catalytic domain DGM98_17190 PF03797 Autotransporter beta-domain DGM98_17190 PF00657 GDSL-like Lipase/Acylhydrolase DGM98_17200 PF05690 Thiazole biosynthesis protein ThiG DGM98_17205 PF02390 Putative methyltransferase DGM98_17210 PF02080 TrkA-C domain DGM98_17210 PF03600 Citrate transporter DGM98_17230 PF01557 Fumarylacetoacetate (FAA) hydrolase family DGM98_17235 PF01741 Large-conductance mechanosensitive channel, MscL DGM98_17245 PF00356 Bacterial regulatory proteins, lacI family DGM98_17255 PF00703 Glycosyl hydrolases family 2 DGM98_17255 PF02837 Glycosyl hydrolases family 2, sugar binding domain DGM98_17255 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain DGM98_17260 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation DGM98_17260 PF14508 Glycosyl-hydrolase 97 N-terminal DGM98_17260 PF10566 Glycoside hydrolase 97 DGM98_17265 PF00135 Carboxylesterase family DGM98_17270 PF00588 SpoU rRNA Methylase family DGM98_17270 PF08032 RNA 2'-O ribose methyltransferase substrate binding DGM98_17280 PF11838 ERAP1-like C-terminal domain DGM98_17280 PF01433 Peptidase family M1 domain DGM98_17285 PF00873 AcrB/AcrD/AcrF family DGM98_17290 PF00529 HlyD membrane-fusion protein of T1SS DGM98_17290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGM98_17295 PF00009 Elongation factor Tu GTP binding domain DGM98_17300 PF01507 Phosphoadenosine phosphosulfate reductase family DGM98_17305 PF00667 FAD binding domain DGM98_17305 PF00258 Flavodoxin DGM98_17305 PF00175 Oxidoreductase NAD-binding domain DGM98_17310 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DGM98_17310 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DGM98_17315 PF01507 Phosphoadenosine phosphosulfate reductase family DGM98_17335 PF01627 Hpt domain DGM98_17335 PF00072 Response regulator receiver domain DGM98_17335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_17335 PF00512 His Kinase A (phospho-acceptor) domain DGM98_17350 PF03466 LysR substrate binding domain DGM98_17350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_17355 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DGM98_17355 PF10414 Sirohaem synthase dimerisation region DGM98_17355 PF14824 Sirohaem biosynthesis protein central DGM98_17360 PF00291 Pyridoxal-phosphate dependent enzyme DGM98_17370 PF01661 Macro domain DGM98_17375 PF00274 Fructose-bisphosphate aldolase class-I DGM98_17390 PF00224 Pyruvate kinase, barrel domain DGM98_17390 PF02887 Pyruvate kinase, alpha/beta domain DGM98_17395 PF13419 Haloacid dehalogenase-like hydrolase DGM98_17400 PF00162 Phosphoglycerate kinase DGM98_17425 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DGM98_17425 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DGM98_17435 PF03922 OmpW family DGM98_17440 PF03922 OmpW family DGM98_17450 PF00753 Metallo-beta-lactamase superfamily DGM98_17450 PF04273 Putative phosphatase (DUF442) DGM98_17460 PF00528 Binding-protein-dependent transport system inner membrane component DGM98_17465 PF00005 ABC transporter DGM98_17465 PF03459 TOBE domain DGM98_17500 PF01476 LysM domain DGM98_17500 PF03734 L,D-transpeptidase catalytic domain DGM98_17505 PF04225 Opacity-associated protein A LysM-like domain DGM98_17505 PF01551 Peptidase family M23 DGM98_17510 PF07715 TonB-dependent Receptor Plug Domain DGM98_17510 PF00593 TonB dependent receptor DGM98_17515 PF12146 Serine aminopeptidase, S33 DGM98_17520 PF02779 Transketolase, pyrimidine binding domain DGM98_17520 PF02780 Transketolase, C-terminal domain DGM98_17520 PF00456 Transketolase, thiamine diphosphate binding domain DGM98_17525 PF00375 Sodium:dicarboxylate symporter family DGM98_17540 PF00092 von Willebrand factor type A domain DGM98_17540 PF07584 Aerotolerance regulator N-terminal DGM98_17560 PF17863 AAA lid domain DGM98_17560 PF07726 ATPase family associated with various cellular activities (AAA) DGM98_17565 PF11741 AMIN domain DGM98_17565 PF00263 Bacterial type II and III secretion system protein DGM98_17565 PF03958 Bacterial type II/III secretion system short domain DGM98_17565 PF07660 Secretin and TonB N terminus short domain DGM98_17570 PF04351 Pilus assembly protein, PilP DGM98_17575 PF04350 Pilus assembly protein, PilO DGM98_17580 PF05137 Fimbrial assembly protein (PilN) DGM98_17585 PF11104 Type IV pilus assembly protein PilM; DGM98_17590 PF17092 Penicillin-binding protein OB-like domain DGM98_17590 PF00912 Transglycosylase DGM98_17590 PF00905 Penicillin binding protein transpeptidase domain DGM98_17600 PF00285 Citrate synthase, C-terminal domain DGM98_17605 PF01197 Ribosomal protein L31 DGM98_17610 PF01156 Inosine-uridine preferring nucleoside hydrolase DGM98_17615 PF00270 DEAD/DEAH box helicase DGM98_17615 PF00271 Helicase conserved C-terminal domain DGM98_17615 PF17191 RecG wedge domain DGM98_17620 PF01042 Endoribonuclease L-PSP DGM98_17625 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DGM98_17625 PF08666 SAF domain DGM98_17630 PF03573 outer membrane porin, OprD family DGM98_17635 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DGM98_17635 PF13378 Enolase C-terminal domain-like DGM98_17640 PF07690 Major Facilitator Superfamily DGM98_17645 PF00171 Aldehyde dehydrogenase family DGM98_17650 PF00701 Dihydrodipicolinate synthetase family DGM98_17655 PF03466 LysR substrate binding domain DGM98_17655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_17660 PF02824 TGS domain DGM98_17660 PF04607 Region found in RelA / SpoT proteins DGM98_17660 PF13291 ACT domain DGM98_17665 PF01192 RNA polymerase Rpb6 DGM98_17670 PF00625 Guanylate kinase DGM98_17675 PF03755 YicC-like family, N-terminal region DGM98_17675 PF08340 Domain of unknown function (DUF1732) DGM98_17680 PF03725 3' exoribonuclease family, domain 2 DGM98_17680 PF01138 3' exoribonuclease family, domain 1 DGM98_17690 PF01725 Ham1 family DGM98_17695 PF04055 Radical SAM superfamily DGM98_17695 PF06969 HemN C-terminal domain DGM98_17710 PF00557 Metallopeptidase family M24 DGM98_17720 PF05195 Aminopeptidase P, N-terminal domain DGM98_17720 PF00557 Metallopeptidase family M24 DGM98_17725 PF03695 Uncharacterised protein family (UPF0149) DGM98_17735 PF05164 Cell division protein ZapA DGM98_17745 PF01812 5-formyltetrahydrofolate cyclo-ligase family DGM98_17755 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DGM98_17765 PF13369 Transglutaminase-like superfamily DGM98_17770 PF00301 Rubredoxin DGM98_17775 PF02581 Thiamine monophosphate synthase DGM98_17790 PF00202 Aminotransferase class-III DGM98_17795 PF17874 MalT-like TPR region DGM98_17795 PF00196 Bacterial regulatory proteins, luxR family DGM98_17800 PF00127 Copper binding proteins, plastocyanin/azurin family DGM98_17805 PF00155 Aminotransferase class I and II DGM98_17815 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DGM98_17815 PF00034 Cytochrome c DGM98_17820 PF01593 Flavin containing amine oxidoreductase DGM98_17835 PF00202 Aminotransferase class-III DGM98_17840 PF00027 Cyclic nucleotide-binding domain DGM98_17840 PF00520 Ion transport protein DGM98_17855 PF01569 PAP2 superfamily DGM98_17870 PF08245 Mur ligase middle domain DGM98_17870 PF02875 Mur ligase family, glutamate ligase domain DGM98_17870 PF01225 Mur ligase family, catalytic domain DGM98_17880 PF00365 Phosphofructokinase DGM98_17890 PF03030 Inorganic H+ pyrophosphatase DGM98_17900 PF00719 Inorganic pyrophosphatase DGM98_17910 PF07715 TonB-dependent Receptor Plug Domain DGM98_17910 PF00593 TonB dependent receptor DGM98_17915 PF12833 Helix-turn-helix domain DGM98_17920 PF00486 Transcriptional regulatory protein, C terminal DGM98_17920 PF18500 CadC C-terminal domain 1 DGM98_17925 PF13667 ThiC-associated domain DGM98_17925 PF01964 Radical SAM ThiC family DGM98_17935 PF00593 TonB dependent receptor DGM98_17935 PF07715 TonB-dependent Receptor Plug Domain DGM98_17940 PF00672 HAMP domain DGM98_17940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_17950 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DGM98_17950 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DGM98_17955 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DGM98_17955 PF00205 Thiamine pyrophosphate enzyme, central domain DGM98_17955 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DGM98_17965 PF00291 Pyridoxal-phosphate dependent enzyme DGM98_17970 PF00682 HMGL-like DGM98_17970 PF08502 LeuA allosteric (dimerisation) domain DGM98_17975 PF00180 Isocitrate/isopropylmalate dehydrogenase DGM98_17980 PF00694 Aconitase C-terminal domain DGM98_17990 PF00330 Aconitase family (aconitate hydratase) DGM98_17995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_18000 PF00990 Diguanylate cyclase, GGDEF domain DGM98_18015 PF02321 Outer membrane efflux protein DGM98_18020 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DGM98_18025 PF03279 Bacterial lipid A biosynthesis acyltransferase DGM98_18050 PF00664 ABC transporter transmembrane region DGM98_18050 PF00005 ABC transporter DGM98_18050 PF03412 Peptidase C39 family DGM98_18075 PF00390 Malic enzyme, N-terminal domain DGM98_18075 PF03949 Malic enzyme, NAD binding domain DGM98_18075 PF01515 Phosphate acetyl/butaryl transferase DGM98_18080 PF00375 Sodium:dicarboxylate symporter family DGM98_18090 PF00512 His Kinase A (phospho-acceptor) domain DGM98_18090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_18090 PF02743 Cache domain DGM98_18095 PF07690 Major Facilitator Superfamily DGM98_18105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_18105 PF03466 LysR substrate binding domain DGM98_18110 PF00248 Aldo/keto reductase family DGM98_18125 PF00196 Bacterial regulatory proteins, luxR family DGM98_18125 PF00072 Response regulator receiver domain DGM98_18135 PF08521 Two-component sensor kinase N-terminal DGM98_18135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_18135 PF00512 His Kinase A (phospho-acceptor) domain DGM98_18140 PF00072 Response regulator receiver domain DGM98_18140 PF00486 Transcriptional regulatory protein, C terminal DGM98_18155 PF03600 Citrate transporter DGM98_18160 PF00106 short chain dehydrogenase DGM98_18165 PF00356 Bacterial regulatory proteins, lacI family DGM98_18180 PF00128 Alpha amylase, catalytic domain DGM98_18200 PF03193 RsgA GTPase DGM98_18230 PF00664 ABC transporter transmembrane region DGM98_18230 PF00005 ABC transporter DGM98_18230 PF03412 Peptidase C39 family DGM98_18235 PF00155 Aminotransferase class I and II DGM98_18250 PF01522 Polysaccharide deacetylase DGM98_18255 PF00462 Glutaredoxin DGM98_18270 PF01979 Amidohydrolase family DGM98_18275 PF01979 Amidohydrolase family DGM98_18295 PF02645 Uncharacterised protein, DegV family COG1307 DGM98_18300 PF01327 Polypeptide deformylase DGM98_18310 PF03960 ArsC family DGM98_18325 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) DGM98_18330 PF01270 Glycosyl hydrolases family 8 DGM98_18335 PF03170 Bacterial cellulose synthase subunit DGM98_18340 PF03552 Cellulose synthase DGM98_18340 PF00535 Glycosyl transferase family 2 DGM98_18340 PF07238 PilZ domain DGM98_18355 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DGM98_18355 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DGM98_18400 PF07715 TonB-dependent Receptor Plug Domain DGM98_18400 PF00593 TonB dependent receptor DGM98_18410 PF07702 UTRA domain DGM98_18410 PF00392 Bacterial regulatory proteins, gntR family DGM98_18420 PF03958 Bacterial type II/III secretion system short domain DGM98_18420 PF00263 Bacterial type II and III secretion system protein DGM98_18430 PF10741 Type II secretion system (T2SS), protein M subtype b DGM98_18435 PF05137 Fimbrial assembly protein (PilN) DGM98_18440 PF03934 Type II secretion system (T2SS), protein K DGM98_18450 PF07963 Prokaryotic N-terminal methylation motif DGM98_18455 PF12019 Type II transport protein GspH DGM98_18460 PF08334 Type II secretion system (T2SS), protein G DGM98_18465 PF00482 Type II secretion system (T2SS), protein F DGM98_18475 PF00437 Type II/IV secretion system protein DGM98_18475 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DGM98_18480 PF00082 Subtilase family DGM98_18480 PF04151 Bacterial pre-peptidase C-terminal domain DGM98_18485 PF13018 Extended Signal Peptide of Type V secretion system DGM98_18485 PF03895 YadA-like membrane anchor domain DGM98_18485 PF05658 Head domain of trimeric autotransporter adhesin DGM98_18485 PF05662 Coiled stalk of trimeric autotransporter adhesin DGM98_18490 PF04151 Bacterial pre-peptidase C-terminal domain DGM98_18490 PF00082 Subtilase family DGM98_18495 PF13018 Extended Signal Peptide of Type V secretion system DGM98_18495 PF03895 YadA-like membrane anchor domain DGM98_18495 PF05658 Head domain of trimeric autotransporter adhesin DGM98_18495 PF05662 Coiled stalk of trimeric autotransporter adhesin DGM98_18500 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DGM98_18500 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DGM98_18500 PF02769 AIR synthase related protein, C-terminal domain DGM98_18515 PF10411 Disulfide bond isomerase protein N-terminus DGM98_18515 PF13098 Thioredoxin-like domain DGM98_18530 PF02899 Phage integrase, N-terminal SAM-like domain DGM98_18530 PF00589 Phage integrase family DGM98_18545 PF03739 Lipopolysaccharide export system permease LptF/LptG DGM98_18555 PF02789 Cytosol aminopeptidase family, N-terminal domain DGM98_18555 PF00883 Cytosol aminopeptidase family, catalytic domain DGM98_18570 PF00133 tRNA synthetases class I (I, L, M and V) DGM98_18570 PF10458 Valyl tRNA synthetase tRNA binding arm DGM98_18570 PF08264 Anticodon-binding domain of tRNA DGM98_18585 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain DGM98_18585 PF01464 Transglycosylase SLT domain DGM98_18605 PF01066 CDP-alcohol phosphatidyltransferase DGM98_18615 PF03129 Anticodon binding domain DGM98_18615 PF04073 Aminoacyl-tRNA editing domain DGM98_18615 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DGM98_18620 PF00816 H-NS histone family DGM98_18630 PF02405 Permease MlaE DGM98_18635 PF00005 ABC transporter DGM98_18640 PF03886 ABC-type transport auxiliary lipoprotein component DGM98_18640 PF02470 MlaD protein DGM98_18660 PF05045 Rhamnan synthesis protein F DGM98_18660 PF14307 Glycosyltransferase WbsX DGM98_18665 PF01144 Coenzyme A transferase DGM98_18670 PF01144 Coenzyme A transferase DGM98_18675 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DGM98_18675 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DGM98_18675 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DGM98_18675 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DGM98_18680 PF00483 Nucleotidyl transferase DGM98_18680 PF01050 Mannose-6-phosphate isomerase DGM98_18685 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DGM98_18685 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DGM98_18685 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DGM98_18690 PF04321 RmlD substrate binding domain DGM98_18695 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DGM98_18700 PF00483 Nucleotidyl transferase DGM98_18705 PF16363 GDP-mannose 4,6 dehydratase DGM98_18710 PF01012 Electron transfer flavoprotein domain DGM98_18715 PF00766 Electron transfer flavoprotein FAD-binding domain DGM98_18715 PF01012 Electron transfer flavoprotein domain DGM98_18730 PF00872 Transposase, Mutator family DGM98_18740 PF01565 FAD binding domain DGM98_18740 PF04030 D-arabinono-1,4-lactone oxidase DGM98_18745 PF00106 short chain dehydrogenase DGM98_18755 PF01370 NAD dependent epimerase/dehydratase family DGM98_18760 PF01593 Flavin containing amine oxidoreductase DGM98_18785 PF00535 Glycosyl transferase family 2 DGM98_18795 PF14524 Wzt C-terminal domain DGM98_18795 PF00005 ABC transporter DGM98_18805 PF01053 Cys/Met metabolism PLP-dependent enzyme DGM98_18810 PF00291 Pyridoxal-phosphate dependent enzyme DGM98_18810 PF00571 CBS domain DGM98_18830 PF00437 Type II/IV secretion system protein DGM98_18835 PF14497 Glutathione S-transferase, C-terminal domain DGM98_18835 PF02798 Glutathione S-transferase, N-terminal domain DGM98_18850 PF00270 DEAD/DEAH box helicase DGM98_18850 PF00271 Helicase conserved C-terminal domain DGM98_18860 PF00593 TonB dependent receptor DGM98_18860 PF07715 TonB-dependent Receptor Plug Domain DGM98_18870 PF01242 6-pyruvoyl tetrahydropterin synthase DGM98_18900 PF13185 GAF domain DGM98_18910 PF00756 Putative esterase DGM98_18915 PF00593 TonB dependent receptor DGM98_18915 PF07715 TonB-dependent Receptor Plug Domain DGM98_18920 PF13419 Haloacid dehalogenase-like hydrolase DGM98_18925 PF11799 impB/mucB/samB family C-terminal domain DGM98_18925 PF00817 impB/mucB/samB family DGM98_18930 PF07977 FabA-like domain DGM98_18935 PF00109 Beta-ketoacyl synthase, N-terminal domain DGM98_18935 PF02801 Beta-ketoacyl synthase, C-terminal domain DGM98_18945 PF01432 Peptidase family M3 DGM98_18960 PF00394 Multicopper oxidase DGM98_18960 PF07731 Multicopper oxidase DGM98_18960 PF07732 Multicopper oxidase DGM98_18965 PF05275 Copper resistance protein B precursor (CopB) DGM98_18970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DGM98_18995 PF01380 SIS domain DGM98_19000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGM98_19005 PF00005 ABC transporter DGM98_19010 PF12704 MacB-like periplasmic core domain DGM98_19010 PF02687 FtsX-like permease family DGM98_19015 PF00005 ABC transporter DGM98_19015 PF02687 FtsX-like permease family DGM98_19015 PF12704 MacB-like periplasmic core domain DGM98_19025 PF00072 Response regulator receiver domain DGM98_19025 PF00158 Sigma-54 interaction domain DGM98_19025 PF02954 Bacterial regulatory protein, Fis family DGM98_19030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_19030 PF00512 His Kinase A (phospho-acceptor) domain DGM98_19035 PF00132 Bacterial transferase hexapeptide (six repeats) DGM98_19035 PF14602 Hexapeptide repeat of succinyl-transferase DGM98_19035 PF12804 MobA-like NTP transferase domain DGM98_19055 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DGM98_19055 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DGM98_19060 PF02874 ATP synthase alpha/beta family, beta-barrel domain DGM98_19060 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DGM98_19065 PF00231 ATP synthase DGM98_19070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DGM98_19070 PF02874 ATP synthase alpha/beta family, beta-barrel domain DGM98_19070 PF00306 ATP synthase alpha/beta chain, C terminal domain DGM98_19075 PF00213 ATP synthase delta (OSCP) subunit DGM98_19080 PF00430 ATP synthase B/B' CF(0) DGM98_19085 PF00137 ATP synthase subunit C DGM98_19090 PF00119 ATP synthase A chain DGM98_19110 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DGM98_19110 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGM98_19120 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DGM98_19120 PF00364 Biotin-requiring enzyme DGM98_19120 PF02817 e3 binding domain DGM98_19155 PF03180 NLPA lipoprotein DGM98_19160 PF00528 Binding-protein-dependent transport system inner membrane component DGM98_19165 PF00005 ABC transporter DGM98_19165 PF09383 NIL domain DGM98_19170 PF00892 EamA-like transporter family DGM98_19175 PF04461 Protein of unknown function (DUF520) DGM98_19185 PF00072 Response regulator receiver domain DGM98_19185 PF00989 PAS fold DGM98_19185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_19185 PF00512 His Kinase A (phospho-acceptor) domain DGM98_19185 PF18415 Histidine kinase receptor ArcB trans-membrane domain DGM98_19185 PF01627 Hpt domain DGM98_19215 PF13419 Haloacid dehalogenase-like hydrolase DGM98_19220 PF00849 RNA pseudouridylate synthase DGM98_19220 PF01479 S4 domain DGM98_19225 PF05175 Methyltransferase small domain DGM98_19225 PF08468 Methyltransferase small domain N-terminal DGM98_19235 PF07995 Glucose / Sorbosone dehydrogenase DGM98_19245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_19245 PF00512 His Kinase A (phospho-acceptor) domain DGM98_19245 PF00989 PAS fold DGM98_19265 PF00842 Alanine racemase, C-terminal domain DGM98_19265 PF01168 Alanine racemase, N-terminal domain DGM98_19270 PF01266 FAD dependent oxidoreductase DGM98_19275 PF01037 Lrp/AsnC ligand binding domain DGM98_19285 PF01641 SelR domain DGM98_19295 PF01618 MotA/TolQ/ExbB proton channel family DGM98_19300 PF13677 Membrane MotB of proton-channel complex MotA/MotB DGM98_19300 PF00691 OmpA family DGM98_19330 PF01061 ABC-2 type transporter DGM98_19340 PF00999 Sodium/hydrogen exchanger family DGM98_19350 PF02469 Fasciclin domain DGM98_19355 PF03167 Uracil DNA glycosylase superfamily DGM98_19365 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DGM98_19375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_19375 PF03466 LysR substrate binding domain DGM98_19380 PF03358 NADPH-dependent FMN reductase DGM98_19385 PF00248 Aldo/keto reductase family DGM98_19400 PF01431 Peptidase family M13 DGM98_19400 PF05649 Peptidase family M13 DGM98_19415 PF13520 Amino acid permease DGM98_19425 PF04397 LytTr DNA-binding domain DGM98_19425 PF00072 Response regulator receiver domain DGM98_19430 PF06580 Histidine kinase DGM98_19430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_19430 PF02743 Cache domain DGM98_19430 PF00672 HAMP domain DGM98_19450 PF05974 Domain of unknown function (DUF892) DGM98_19455 PF05067 Manganese containing catalase DGM98_19475 PF01339 CheB methylesterase DGM98_19475 PF01739 CheR methyltransferase, SAM binding domain DGM98_19475 PF03705 CheR methyltransferase, all-alpha domain DGM98_19475 PF08448 PAS fold DGM98_19490 PF02954 Bacterial regulatory protein, Fis family DGM98_19490 PF00072 Response regulator receiver domain DGM98_19490 PF00158 Sigma-54 interaction domain DGM98_19505 PF01654 Cytochrome bd terminal oxidase subunit I DGM98_19510 PF02322 Cytochrome bd terminal oxidase subunit II DGM98_19530 PF16363 GDP-mannose 4,6 dehydratase DGM98_19540 PF03275 UDP-galactopyranose mutase DGM98_19550 PF00664 ABC transporter transmembrane region DGM98_19550 PF00005 ABC transporter DGM98_19565 PF08240 Alcohol dehydrogenase GroES-like domain DGM98_19565 PF13823 Alcohol dehydrogenase GroES-associated DGM98_19565 PF00107 Zinc-binding dehydrogenase DGM98_19610 PF07715 TonB-dependent Receptor Plug Domain DGM98_19610 PF00593 TonB dependent receptor DGM98_19625 PF00005 ABC transporter DGM98_19635 PF03466 LysR substrate binding domain DGM98_19635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_19655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGM98_19655 PF00672 HAMP domain DGM98_19670 PF03466 LysR substrate binding domain DGM98_19670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_19675 PF02525 Flavodoxin-like fold DGM98_19705 PF01740 STAS domain DGM98_19705 PF00916 Sulfate permease family DGM98_19720 PF00557 Metallopeptidase family M24 DGM98_19750 PF01850 PIN domain DGM98_19765 PF00145 C-5 cytosine-specific DNA methylase DGM98_19800 PF07996 Type IV secretion system proteins DGM98_19815 PF00589 Phage integrase family DGM98_19825 PF02899 Phage integrase, N-terminal SAM-like domain DGM98_19825 PF00589 Phage integrase family DGM98_19890 PF06791 Prophage tail length tape measure protein DGM98_19920 PF04546 Sigma-70, non-essential region DGM98_19920 PF03979 Sigma-70 factor, region 1.1 DGM98_19920 PF00140 Sigma-70 factor, region 1.2 DGM98_19920 PF04542 Sigma-70 region 2 DGM98_19920 PF04539 Sigma-70 region 3 DGM98_19920 PF04545 Sigma-70, region 4 DGM98_19925 PF02580 D-Tyr-tRNA(Tyr) deacylase DGM98_19930 PF03279 Bacterial lipid A biosynthesis acyltransferase DGM98_19950 PF00925 GTP cyclohydrolase II DGM98_19970 PF00535 Glycosyl transferase family 2 DGM98_19985 PF01029 NusB family DGM98_19985 PF01189 16S rRNA methyltransferase RsmB/F DGM98_19990 PF02911 Formyl transferase, C-terminal domain DGM98_19990 PF00551 Formyl transferase DGM98_19995 PF01327 Polypeptide deformylase DGM98_20000 PF01476 LysM domain DGM98_20005 PF02481 DNA recombination-mediator protein A DGM98_20005 PF17782 DprA winged helix domain DGM98_20010 PF04361 Protein of unknown function (DUF494) DGM98_20015 PF00114 Pilin (bacterial filament) DGM98_20015 PF07963 Prokaryotic N-terminal methylation motif DGM98_20025 PF01751 Toprim domain DGM98_20025 PF13368 Topoisomerase C-terminal repeat DGM98_20025 PF01131 DNA topoisomerase DGM98_20030 PF01300 Telomere recombination DGM98_20060 PF01343 Peptidase family S49 DGM98_20065 PF01554 MatE DGM98_20085 PF00270 DEAD/DEAH box helicase DGM98_20085 PF00271 Helicase conserved C-terminal domain DGM98_20085 PF18074 Primosomal protein N C-terminal domain DGM98_20085 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DGM98_20085 PF17764 3′ DNA-binding domain (3′BD) DGM98_20090 PF13417 Glutathione S-transferase, N-terminal domain DGM98_20090 PF00043 Glutathione S-transferase, C-terminal domain DGM98_20105 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGM98_20110 PF03458 UPF0126 domain DGM98_20115 PF04542 Sigma-70 region 2 DGM98_20115 PF04545 Sigma-70, region 4 DGM98_20120 PF03167 Uracil DNA glycosylase superfamily DGM98_20125 PF00072 Response regulator receiver domain DGM98_20130 PF18075 FtsX extracellular domain DGM98_20135 PF00005 ABC transporter DGM98_20140 PF12300 ATP-dependent RNA helicase RhlB DGM98_20140 PF00270 DEAD/DEAH box helicase DGM98_20140 PF00271 Helicase conserved C-terminal domain DGM98_20145 PF00085 Thioredoxin DGM98_20150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DGM98_20150 PF07498 Rho termination factor, N-terminal domain DGM98_20150 PF07497 Rho termination factor, RNA-binding domain DGM98_20155 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) DGM98_20160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_20160 PF03466 LysR substrate binding domain DGM98_20170 PF03971 Monomeric isocitrate dehydrogenase DGM98_20180 PF04972 BON domain DGM98_20180 PF01476 LysM domain DGM98_20185 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DGM98_20185 PF14489 QueF-like protein DGM98_20190 PF07687 Peptidase dimerisation domain DGM98_20190 PF01546 Peptidase family M20/M25/M40 DGM98_20195 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGM98_20200 PF00873 AcrB/AcrD/AcrF family DGM98_20205 PF00873 AcrB/AcrD/AcrF family DGM98_20220 PF07063 Domain of unknown function (DUF1338) DGM98_20275 PF13378 Enolase C-terminal domain-like DGM98_20275 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DGM98_20285 PF13520 Amino acid permease DGM98_20300 PF05360 yiaA/B two helix domain DGM98_20305 PF07995 Glucose / Sorbosone dehydrogenase DGM98_20310 PF14310 Fibronectin type III-like domain DGM98_20310 PF00933 Glycosyl hydrolase family 3 N terminal domain DGM98_20310 PF01915 Glycosyl hydrolase family 3 C-terminal domain DGM98_20315 PF02152 Dihydroneopterin aldolase DGM98_20320 PF00814 Glycoprotease family DGM98_20325 PF01165 Ribosomal protein S21 DGM98_20330 PF09424 Yqey-like protein DGM98_20340 PF03631 Virulence factor BrkB DGM98_20345 PF08275 DNA primase catalytic core, N-terminal domain DGM98_20345 PF10410 DnaB-helicase binding domain of primase DGM98_20345 PF01807 CHC2 zinc finger DGM98_20345 PF08278 DNA primase DnaG DnaB-binding DGM98_20350 PF13593 SBF-like CPA transporter family (DUF4137) DGM98_20360 PF01040 UbiA prenyltransferase family DGM98_20385 PF00510 Cytochrome c oxidase subunit III DGM98_20390 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 DGM98_20400 PF00115 Cytochrome C and Quinol oxidase polypeptide I DGM98_20405 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DGM98_20405 PF02790 Cytochrome C oxidase subunit II, transmembrane domain DGM98_20415 PF00171 Aldehyde dehydrogenase family DGM98_20415 PF01619 Proline dehydrogenase DGM98_20415 PF14850 DNA-binding domain of Proline dehydrogenase DGM98_20415 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DGM98_20450 PF00579 tRNA synthetases class I (W and Y) DGM98_20455 PF01551 Peptidase family M23 DGM98_20455 PF04225 Opacity-associated protein A LysM-like domain DGM98_20460 PF03702 Anhydro-N-acetylmuramic acid kinase DGM98_20470 PF07690 Major Facilitator Superfamily DGM98_20475 PF03372 Endonuclease/Exonuclease/phosphatase family DGM98_20480 PF00156 Phosphoribosyl transferase domain DGM98_20490 PF13614 AAA domain DGM98_20495 PF17762 HTH domain found in ParB protein DGM98_20495 PF02195 ParB-like nuclease domain DGM98_20510 PF01370 NAD dependent epimerase/dehydratase family DGM98_20515 PF00535 Glycosyl transferase family 2 DGM98_20530 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DGM98_20530 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DGM98_20530 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DGM98_20530 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DGM98_20535 PF00692 dUTPase DGM98_20540 PF02441 Flavoprotein DGM98_20540 PF04127 DNA / pantothenate metabolism flavoprotein DGM98_20545 PF04002 RadC-like JAB domain DGM98_20550 PF03485 Arginyl tRNA synthetase N terminal domain DGM98_20550 PF05746 DALR anticodon binding domain DGM98_20550 PF00750 tRNA synthetases class I (R) DGM98_20565 PF00106 short chain dehydrogenase DGM98_20570 PF01757 Acyltransferase family DGM98_20575 PF03033 Glycosyltransferase family 28 N-terminal domain DGM98_20580 PF00668 Condensation domain DGM98_20580 PF00501 AMP-binding enzyme DGM98_20580 PF13193 AMP-binding enzyme C-terminal domain DGM98_20580 PF00550 Phosphopantetheine attachment site DGM98_20580 PF00975 Thioesterase domain DGM98_20590 PF17810 Arginine decarboxylase helical bundle domain DGM98_20590 PF17944 Arginine decarboxylase C-terminal helical extension DGM98_20590 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DGM98_20595 PF17284 Spermidine synthase tetramerisation domain DGM98_20620 PF00754 F5/8 type C domain DGM98_20620 PF02838 Glycosyl hydrolase family 20, domain 2 DGM98_20620 PF00041 Fibronectin type III domain DGM98_20620 PF00963 Cohesin domain DGM98_20620 PF07555 beta-N-acetylglucosaminidase DGM98_20630 PF00543 Nitrogen regulatory protein P-II DGM98_20635 PF04380 Membrane fusogenic activity DGM98_20640 PF01078 Magnesium chelatase, subunit ChlI DGM98_20640 PF13335 Magnesium chelatase, subunit ChlI C-terminal DGM98_20655 PF12792 CSS motif domain associated with EAL DGM98_20655 PF00563 EAL domain DGM98_20660 PF00487 Fatty acid desaturase DGM98_20665 PF00970 Oxidoreductase FAD-binding domain DGM98_20665 PF00111 2Fe-2S iron-sulfur cluster binding domain DGM98_20665 PF00175 Oxidoreductase NAD-binding domain DGM98_20670 PF00440 Bacterial regulatory proteins, tetR family DGM98_20690 PF01139 tRNA-splicing ligase RtcB DGM98_20725 PF01370 NAD dependent epimerase/dehydratase family DGM98_20725 PF08338 Domain of unknown function (DUF1731) DGM98_20730 PF00486 Transcriptional regulatory protein, C terminal DGM98_20730 PF00072 Response regulator receiver domain DGM98_20735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_20735 PF08521 Two-component sensor kinase N-terminal DGM98_20735 PF00512 His Kinase A (phospho-acceptor) domain DGM98_20760 PF00595 PDZ domain DGM98_20780 PF01594 AI-2E family transporter DGM98_20790 PF00883 Cytosol aminopeptidase family, catalytic domain DGM98_20790 PF02789 Cytosol aminopeptidase family, N-terminal domain DGM98_20800 PF00872 Transposase, Mutator family DGM98_20810 PF00199 Catalase DGM98_20825 PF00196 Bacterial regulatory proteins, luxR family DGM98_20825 PF00072 Response regulator receiver domain DGM98_20830 PF07730 Histidine kinase DGM98_20835 PF13533 Biotin-lipoyl like DGM98_20840 PF00005 ABC transporter DGM98_20860 PF00892 EamA-like transporter family DGM98_20865 PF00892 EamA-like transporter family DGM98_20885 PF00753 Metallo-beta-lactamase superfamily DGM98_20890 PF00579 tRNA synthetases class I (W and Y) DGM98_20895 PF05532 CsbD-like DGM98_20910 PF00491 Arginase family DGM98_20935 PF02223 Thymidylate kinase DGM98_20950 PF03309 Type III pantothenate kinase DGM98_20955 PF08279 HTH domain DGM98_20955 PF03099 Biotin/lipoate A/B protein ligase family DGM98_20955 PF02237 Biotin protein ligase C terminal domain DGM98_20970 PF06167 Glucose-regulated metallo-peptidase M90 DGM98_20985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_20990 PF00072 Response regulator receiver domain DGM98_20990 PF00486 Transcriptional regulatory protein, C terminal DGM98_21000 PF01207 Dihydrouridine synthase (Dus) DGM98_21020 PF00199 Catalase DGM98_21020 PF06628 Catalase-related immune-responsive DGM98_21030 PF13307 Helicase C-terminal domain DGM98_21030 PF06733 DEAD_2 DGM98_21045 PF01488 Shikimate / quinate 5-dehydrogenase DGM98_21045 PF08501 Shikimate dehydrogenase substrate binding domain DGM98_21045 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DGM98_21060 PF00667 FAD binding domain DGM98_21060 PF00258 Flavodoxin DGM98_21060 PF00175 Oxidoreductase NAD-binding domain DGM98_21070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_21070 PF03466 LysR substrate binding domain DGM98_21085 PF00490 Delta-aminolevulinic acid dehydratase DGM98_21115 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region DGM98_21115 PF00326 Prolyl oligopeptidase family DGM98_21120 PF02798 Glutathione S-transferase, N-terminal domain DGM98_21120 PF00043 Glutathione S-transferase, C-terminal domain DGM98_21140 PF04820 Tryptophan halogenase DGM98_21155 PF00005 ABC transporter DGM98_21165 PF01381 Helix-turn-helix DGM98_21175 PF01229 Glycosyl hydrolases family 39 DGM98_21180 PF02583 Metal-sensitive transcriptional repressor DGM98_21185 PF01545 Cation efflux family DGM98_21195 PF07715 TonB-dependent Receptor Plug Domain DGM98_21195 PF00593 TonB dependent receptor DGM98_21205 PF01965 DJ-1/PfpI family DGM98_21205 PF12833 Helix-turn-helix domain DGM98_21210 PF01383 CpcD/allophycocyanin linker domain DGM98_21210 PF00970 Oxidoreductase FAD-binding domain DGM98_21210 PF00175 Oxidoreductase NAD-binding domain DGM98_21215 PF00005 ABC transporter DGM98_21220 PF01061 ABC-2 type transporter DGM98_21225 PF02558 Ketopantoate reductase PanE/ApbA DGM98_21225 PF08546 Ketopantoate reductase PanE/ApbA C terminal DGM98_21245 PF00085 Thioredoxin DGM98_21255 PF00268 Ribonucleotide reductase, small chain DGM98_21265 PF00317 Ribonucleotide reductase, all-alpha domain DGM98_21265 PF02867 Ribonucleotide reductase, barrel domain DGM98_21265 PF03477 ATP cone domain DGM98_21280 PF13607 Succinyl-CoA ligase like flavodoxin domain DGM98_21280 PF13380 CoA binding domain DGM98_21280 PF00583 Acetyltransferase (GNAT) family DGM98_21285 PF00571 CBS domain DGM98_21285 PF03448 MgtE intracellular N domain DGM98_21285 PF01769 Divalent cation transporter DGM98_21295 PF00194 Eukaryotic-type carbonic anhydrase DGM98_21300 PF02254 TrkA-N domain DGM98_21300 PF00999 Sodium/hydrogen exchanger family DGM98_21305 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DGM98_21305 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DGM98_21310 PF00723 Glycosyl hydrolases family 15 DGM98_21325 PF05166 YcgL domain DGM98_21330 PF00109 Beta-ketoacyl synthase, N-terminal domain DGM98_21330 PF02801 Beta-ketoacyl synthase, C-terminal domain DGM98_21340 PF00535 Glycosyl transferase family 2 DGM98_21400 PF07977 FabA-like domain DGM98_21405 PF01553 Acyltransferase DGM98_21415 PF00550 Phosphopantetheine attachment site DGM98_21420 PF04820 Tryptophan halogenase DGM98_21445 PF07676 WD40-like Beta Propeller Repeat DGM98_21445 PF00326 Prolyl oligopeptidase family DGM98_21465 PF01218 Coproporphyrinogen III oxidase DGM98_21470 PF01367 5'-3' exonuclease, C-terminal SAM fold DGM98_21470 PF00476 DNA polymerase family A DGM98_21470 PF01612 3'-5' exonuclease DGM98_21470 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DGM98_21480 PF06812 ImpA, N-terminal, type VI secretion system DGM98_21500 PF00069 Protein kinase domain DGM98_21515 PF06744 Type VI secretion protein IcmF C-terminal DGM98_21515 PF06761 Intracellular multiplication and human macrophage-killing DGM98_21515 PF14331 ImcF-related N-terminal domain DGM98_21525 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DGM98_21540 PF04717 Type VI secretion system, phage-baseplate injector DGM98_21555 PF03793 PASTA domain DGM98_21555 PF00069 Protein kinase domain DGM98_21565 PF04542 Sigma-70 region 2 DGM98_21565 PF08281 Sigma-70, region 4 DGM98_21585 PF00328 Histidine phosphatase superfamily (branch 2) DGM98_21620 PF00004 ATPase family associated with various cellular activities (AAA) DGM98_21620 PF07724 AAA domain (Cdc48 subfamily) DGM98_21620 PF17871 AAA lid domain DGM98_21620 PF10431 C-terminal, D2-small domain, of ClpB protein DGM98_21630 PF05947 Type VI secretion system, TssF DGM98_21635 PF04965 Gene 25-like lysozyme DGM98_21640 PF07024 ImpE protein DGM98_21645 PF05638 Type VI secretion system effector, Hcp DGM98_21650 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath DGM98_21655 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 DGM98_21670 PF12464 Maltose acetyltransferase DGM98_21670 PF14602 Hexapeptide repeat of succinyl-transferase DGM98_21680 PF13361 UvrD-like helicase C-terminal domain DGM98_21680 PF00580 UvrD/REP helicase N-terminal domain DGM98_21690 PF13091 PLD-like domain DGM98_21690 PF13396 Phospholipase_D-nuclease N-terminal DGM98_21695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_21695 PF03466 LysR substrate binding domain DGM98_21700 PF03737 Aldolase/RraA DGM98_21705 PF04303 PrpF protein DGM98_21715 PF04909 Amidohydrolase DGM98_21720 PF00471 Ribosomal protein L33 DGM98_21725 PF00830 Ribosomal L28 family DGM98_21730 PF00873 AcrB/AcrD/AcrF family DGM98_21745 PF13533 Biotin-lipoyl like DGM98_21765 PF02527 rRNA small subunit methyltransferase G DGM98_21770 PF09423 PhoD-like phosphatase DGM98_21770 PF16655 PhoD-like phosphatase, N-terminal domain DGM98_21775 PF09423 PhoD-like phosphatase DGM98_21775 PF16655 PhoD-like phosphatase, N-terminal domain DGM98_21780 PF01648 4'-phosphopantetheinyl transferase superfamily DGM98_21785 PF04226 Transglycosylase associated protein DGM98_21795 PF03372 Endonuclease/Exonuclease/phosphatase family DGM98_21800 PF00480 ROK family DGM98_21810 PF09312 SurA N-terminal domain DGM98_21810 PF00639 PPIC-type PPIASE domain DGM98_21825 PF00474 Sodium:solute symporter family DGM98_21830 PF04341 Protein of unknown function, DUF485 DGM98_21840 PF16177 Acetyl-coenzyme A synthetase N-terminus DGM98_21840 PF00501 AMP-binding enzyme DGM98_21840 PF13193 AMP-binding enzyme C-terminal domain DGM98_21845 PF00196 Bacterial regulatory proteins, luxR family DGM98_21845 PF00072 Response regulator receiver domain DGM98_21870 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DGM98_21870 PF04616 Glycosyl hydrolases family 43 DGM98_21880 PF00248 Aldo/keto reductase family DGM98_21895 PF01557 Fumarylacetoacetate (FAA) hydrolase family DGM98_21900 PF13378 Enolase C-terminal domain-like DGM98_21900 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DGM98_21905 PF05336 L-rhamnose mutarotase DGM98_21910 PF07690 Major Facilitator Superfamily DGM98_21915 PF09339 IclR helix-turn-helix domain DGM98_21915 PF01614 Bacterial transcriptional regulator DGM98_21920 PF02659 Putative manganese efflux pump DGM98_21925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_21925 PF00512 His Kinase A (phospho-acceptor) domain DGM98_21940 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain DGM98_21940 PF06165 Glycosyltransferase family 36 DGM98_21960 PF01011 PQQ enzyme repeat DGM98_21960 PF13360 PQQ-like domain DGM98_21960 PF13570 PQQ-like domain DGM98_21980 PF04357 TamB, inner membrane protein subunit of TAM complex DGM98_21985 PF17243 POTRA domain TamA domain 1 DGM98_21985 PF01103 Surface antigen DGM98_22005 PF00664 ABC transporter transmembrane region DGM98_22005 PF00005 ABC transporter DGM98_22005 PF03412 Peptidase C39 family DGM98_22010 PF05746 DALR anticodon binding domain DGM98_22010 PF02092 Glycyl-tRNA synthetase beta subunit DGM98_22015 PF02091 Glycyl-tRNA synthetase alpha subunit DGM98_22020 PF00437 Type II/IV secretion system protein DGM98_22020 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DGM98_22040 PF00958 GMP synthase C terminal domain DGM98_22040 PF00117 Glutamine amidotransferase class-I DGM98_22050 PF00902 Sec-independent protein translocase protein (TatC) DGM98_22055 PF02416 mttA/Hcf106 family DGM98_22060 PF02416 mttA/Hcf106 family DGM98_22070 PF00762 Ferrochelatase DGM98_22075 PF12697 Alpha/beta hydrolase family DGM98_22090 PF04381 Putative exonuclease, RdgC DGM98_22095 PF01171 PP-loop family DGM98_22105 PF00356 Bacterial regulatory proteins, lacI family DGM98_22110 PF03648 Glycosyl hydrolase family 67 N-terminus DGM98_22110 PF07488 Glycosyl hydrolase family 67 middle domain DGM98_22110 PF07477 Glycosyl hydrolase family 67 C-terminus DGM98_22120 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DGM98_22120 PF13378 Enolase C-terminal domain-like DGM98_22125 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DGM98_22125 PF04616 Glycosyl hydrolases family 43 DGM98_22130 PF07691 PA14 domain DGM98_22130 PF01915 Glycosyl hydrolase family 3 C-terminal domain DGM98_22130 PF00933 Glycosyl hydrolase family 3 N terminal domain DGM98_22130 PF14310 Fibronectin type III-like domain DGM98_22135 PF01232 Mannitol dehydrogenase Rossmann domain DGM98_22135 PF08125 Mannitol dehydrogenase C-terminal domain DGM98_22170 PF00171 Aldehyde dehydrogenase family DGM98_22185 PF00202 Aminotransferase class-III DGM98_22195 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DGM98_22195 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DGM98_22215 PF08450 SMP-30/Gluconolactonase/LRE-like region DGM98_22220 PF00331 Glycosyl hydrolase family 10 DGM98_22225 PF16355 Domain of unknown function (DUF4982) DGM98_22225 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 DGM98_22225 PF00703 Glycosyl hydrolases family 2 DGM98_22225 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DGM98_22225 PF02837 Glycosyl hydrolases family 2, sugar binding domain DGM98_22230 PF02614 Glucuronate isomerase DGM98_22245 PF00553 Cellulose binding domain DGM98_22245 PF00331 Glycosyl hydrolase family 10 DGM98_22245 PF03422 Carbohydrate binding module (family 6) DGM98_22265 PF04616 Glycosyl hydrolases family 43 DGM98_22300 PF13749 Putative ATP-dependent DNA helicase recG C-terminal DGM98_22300 PF00270 DEAD/DEAH box helicase DGM98_22300 PF17191 RecG wedge domain DGM98_22315 PF08240 Alcohol dehydrogenase GroES-like domain DGM98_22315 PF00698 Acyl transferase domain DGM98_22315 PF14765 Polyketide synthase dehydratase DGM98_22315 PF00550 Phosphopantetheine attachment site DGM98_22315 PF00107 Zinc-binding dehydrogenase DGM98_22315 PF08659 KR domain DGM98_22315 PF02801 Beta-ketoacyl synthase, C-terminal domain DGM98_22315 PF00109 Beta-ketoacyl synthase, N-terminal domain DGM98_22315 PF16197 Ketoacyl-synthetase C-terminal extension DGM98_22320 PF01553 Acyltransferase DGM98_22335 PF00356 Bacterial regulatory proteins, lacI family DGM98_22350 PF04820 Tryptophan halogenase DGM98_22355 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DGM98_22360 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) DGM98_22370 PF04337 Protein of unknown function, DUF480 DGM98_22380 PF13302 Acetyltransferase (GNAT) domain DGM98_22385 PF13361 UvrD-like helicase C-terminal domain DGM98_22385 PF00580 UvrD/REP helicase N-terminal domain DGM98_22390 PF00265 Thymidine kinase DGM98_22395 PF08446 PAS fold DGM98_22395 PF01590 GAF domain DGM98_22395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGM98_22395 PF00512 His Kinase A (phospho-acceptor) domain DGM98_22395 PF00360 Phytochrome region DGM98_22400 PF04349 Periplasmic glucan biosynthesis protein, MdoG DGM98_22410 PF06827 Zinc finger found in FPG and IleRS DGM98_22410 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DGM98_22410 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DGM98_22440 PF03594 Benzoate membrane transport protein DGM98_22445 PF08446 PAS fold DGM98_22445 PF13426 PAS domain DGM98_22445 PF00360 Phytochrome region DGM98_22445 PF01590 GAF domain DGM98_22450 PF01126 Heme oxygenase DGM98_22455 PF07690 Major Facilitator Superfamily DGM98_22465 PF01263 Aldose 1-epimerase DGM98_22475 PF02810 SEC-C motif DGM98_22480 PF01925 Sulfite exporter TauE/SafE DGM98_22500 PF01227 GTP cyclohydrolase I DGM98_22510 PF07869 Protein of unknown function (DUF1656) DGM98_22515 PF00529 HlyD membrane-fusion protein of T1SS DGM98_22515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGM98_22520 PF02321 Outer membrane efflux protein DGM98_22525 PF04632 Fusaric acid resistance protein family DGM98_22530 PF00083 Sugar (and other) transporter DGM98_22540 PF03466 LysR substrate binding domain DGM98_22540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGM98_22545 PF00106 short chain dehydrogenase DGM98_22550 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family DGM98_22555 PF13396 Phospholipase_D-nuclease N-terminal DGM98_22555 PF13091 PLD-like domain DGM98_22615 PF00849 RNA pseudouridylate synthase DGM98_22700 PF13538 UvrD-like helicase C-terminal domain DGM98_22705 PF00580 UvrD/REP helicase N-terminal domain DGM98_22705 PF12705 PD-(D/E)XK nuclease superfamily DGM98_22705 PF13361 UvrD-like helicase C-terminal domain DGM98_22710 PF17946 RecC C-terminal domain DGM98_22745 PF00005 ABC transporter DGM98_22750 PF02405 Permease MlaE DGM98_22755 PF02470 MlaD protein DGM98_22760 PF05494 MlaC protein DGM98_22770 PF04333 MlaA lipoprotein DGM98_22780 PF00255 Glutathione peroxidase DGM98_22790 PF02646 RmuC family DGM98_22805 PF00043 Glutathione S-transferase, C-terminal domain DGM98_22805 PF13417 Glutathione S-transferase, N-terminal domain DGM98_22815 PF13520 Amino acid permease DGM98_22820 PF17678 Glycosyl hydrolase family 92 N-terminal domain DGM98_22820 PF07971 Glycosyl hydrolase family 92 DGM98_22830 PF10947 Protein of unknown function (DUF2628) DGM98_22835 PF00990 Diguanylate cyclase, GGDEF domain DGM98_22840 PF05651 Putative sugar diacid recognition DGM98_22840 PF17853 GGDEF-like domain DGM98_22840 PF13556 PucR C-terminal helix-turn-helix domain DGM98_22865 PF10672 S-adenosylmethionine-dependent methyltransferase DGM98_22865 PF17785 PUA-like domain DGM98_22875 PF03741 Integral membrane protein TerC family DGM98_22880 PF01694 Rhomboid family DGM98_22885 PF03009 Glycerophosphoryl diester phosphodiesterase family DGM98_22895 PF01569 PAP2 superfamily DGM98_22900 PF01926 50S ribosome-binding GTPase DGM98_22900 PF12631 MnmE helical domain DGM98_22900 PF10396 GTP-binding protein TrmE N-terminus DGM98_22915 PF02096 60Kd inner membrane protein DGM98_22915 PF14849 YidC periplasmic domain DGM98_22920 PF00825 Ribonuclease P DGM98_22925 PF00468 Ribosomal protein L34 DGM98_23000 PF03421 YopJ Serine/Threonine acetyltransferase DGM98_23030 PF02796 Helix-turn-helix domain of resolvase DGM98_23030 PF00239 Resolvase, N terminal domain DGM98_23040 PF01850 PIN domain DGM98_23095 PF03743 Bacterial conjugation TrbI-like protein DGM98_23110 PF04610 TrbL/VirB6 plasmid conjugal transfer protein DGM98_23120 PF03135 CagE, TrbE, VirB family, component of type IV transporter system DGM98_23135 PF00437 Type II/IV secretion system protein DGM98_23160 PF00872 Transposase, Mutator family DGM98_23180 PF02534 Type IV secretory system Conjugative DNA transfer DGM98_23245 PF03377 TAL effector repeat