locus-tag class description DGN02_00010 PF00308 Bacterial dnaA protein DGN02_00010 PF08299 Bacterial dnaA protein helix-turn-helix DGN02_00010 PF11638 DnaA N-terminal domain DGN02_00015 PF00712 DNA polymerase III beta subunit, N-terminal domain DGN02_00015 PF02767 DNA polymerase III beta subunit, central domain DGN02_00015 PF02768 DNA polymerase III beta subunit, C-terminal domain DGN02_00020 PF02463 RecF/RecN/SMC N terminal domain DGN02_00025 PF01751 Toprim domain DGN02_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_00025 PF00986 DNA gyrase B subunit, carboxyl terminus DGN02_00025 PF00204 DNA gyrase B DGN02_00025 PF18053 DNA gyrase B subunit insert domain DGN02_00035 PF01435 Peptidase family M48 DGN02_00045 PF03544 Gram-negative bacterial TonB protein C-terminal DGN02_00050 PF01618 MotA/TolQ/ExbB proton channel family DGN02_00055 PF02472 Biopolymer transport protein ExbD/TolR DGN02_00060 PF02472 Biopolymer transport protein ExbD/TolR DGN02_00065 PF02472 Biopolymer transport protein ExbD/TolR DGN02_00070 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DGN02_00080 PF13091 PLD-like domain DGN02_00080 PF13396 Phospholipase_D-nuclease N-terminal DGN02_00100 PF04055 Radical SAM superfamily DGN02_00110 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DGN02_00125 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DGN02_00125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DGN02_00130 PF03572 Peptidase family S41 DGN02_00130 PF13180 PDZ domain DGN02_00135 PF01551 Peptidase family M23 DGN02_00145 PF04389 Peptidase family M28 DGN02_00155 PF00150 Cellulase (glycosyl hydrolase family 5) DGN02_00160 PF00150 Cellulase (glycosyl hydrolase family 5) DGN02_00165 PF00150 Cellulase (glycosyl hydrolase family 5) DGN02_00175 PF08240 Alcohol dehydrogenase GroES-like domain DGN02_00175 PF00107 Zinc-binding dehydrogenase DGN02_00190 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DGN02_00190 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGN02_00195 PF01493 GXGXG motif DGN02_00195 PF01645 Conserved region in glutamate synthase DGN02_00195 PF04898 Glutamate synthase central domain DGN02_00195 PF00310 Glutamine amidotransferases class-II DGN02_00290 PF00270 DEAD/DEAH box helicase DGN02_00290 PF09369 Domain of unknown function (DUF1998) DGN02_00290 PF00271 Helicase conserved C-terminal domain DGN02_00295 PF03006 Haemolysin-III related DGN02_00315 PF00106 short chain dehydrogenase DGN02_00325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_00325 PF03466 LysR substrate binding domain DGN02_00335 PF02525 Flavodoxin-like fold DGN02_00370 PF05532 CsbD-like DGN02_00390 PF16485 Protealysin propeptide DGN02_00390 PF02868 Thermolysin metallopeptidase, alpha-helical domain DGN02_00390 PF01447 Thermolysin metallopeptidase, catalytic domain DGN02_00400 PF00293 NUDIX domain DGN02_00400 PF13344 Haloacid dehalogenase-like hydrolase DGN02_00420 PF00085 Thioredoxin DGN02_00430 PF08946 Osmosensory transporter coiled coil DGN02_00430 PF00083 Sugar (and other) transporter DGN02_00480 PF07726 ATPase family associated with various cellular activities (AAA) DGN02_00480 PF17863 AAA lid domain DGN02_00515 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DGN02_00520 PF00155 Aminotransferase class I and II DGN02_00525 PF00593 TonB dependent receptor DGN02_00525 PF07715 TonB-dependent Receptor Plug Domain DGN02_00540 PF00171 Aldehyde dehydrogenase family DGN02_00560 PF02735 Ku70/Ku80 beta-barrel domain DGN02_00565 PF01070 FMN-dependent dehydrogenase DGN02_00575 PF00144 Beta-lactamase DGN02_00580 PF07730 Histidine kinase DGN02_00585 PF00072 Response regulator receiver domain DGN02_00585 PF00196 Bacterial regulatory proteins, luxR family DGN02_00605 PF18500 CadC C-terminal domain 1 DGN02_00605 PF00486 Transcriptional regulatory protein, C terminal DGN02_00610 PF12241 Trans-2-enoyl-CoA reductase catalytic region DGN02_00610 PF07055 Enoyl reductase FAD binding domain DGN02_00610 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DGN02_00620 PF00294 pfkB family carbohydrate kinase DGN02_00710 PF00795 Carbon-nitrogen hydrolase DGN02_00710 PF02540 NAD synthase DGN02_00720 PF11896 Domain of unknown function (DUF3416) DGN02_00720 PF00128 Alpha amylase, catalytic domain DGN02_00725 PF00128 Alpha amylase, catalytic domain DGN02_00725 PF16657 Maltogenic Amylase, C-terminal domain DGN02_00730 PF00128 Alpha amylase, catalytic domain DGN02_00730 PF02806 Alpha amylase, C-terminal all-beta domain DGN02_00730 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DGN02_00740 PF00248 Aldo/keto reductase family DGN02_00745 PF00135 Carboxylesterase family DGN02_00750 PF07859 alpha/beta hydrolase fold DGN02_00750 PF13472 GDSL-like Lipase/Acylhydrolase family DGN02_00760 PF03480 Bacterial extracellular solute-binding protein, family 7 DGN02_00770 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DGN02_00775 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DGN02_00775 PF04616 Glycosyl hydrolases family 43 DGN02_00780 PF00356 Bacterial regulatory proteins, lacI family DGN02_00795 PF04962 KduI/IolB family DGN02_00810 PF00657 GDSL-like Lipase/Acylhydrolase DGN02_00820 PF00351 Biopterin-dependent aromatic amino acid hydroxylase DGN02_00825 PF01037 Lrp/AsnC ligand binding domain DGN02_00830 PF07660 Secretin and TonB N terminus short domain DGN02_00830 PF07715 TonB-dependent Receptor Plug Domain DGN02_00830 PF00593 TonB dependent receptor DGN02_00835 PF01734 Patatin-like phospholipase DGN02_00845 PF00005 ABC transporter DGN02_00860 PF00005 ABC transporter DGN02_00865 PF00528 Binding-protein-dependent transport system inner membrane component DGN02_00875 PF12867 DinB superfamily DGN02_00875 PF03781 Sulfatase-modifying factor enzyme 1 DGN02_00905 PF01883 Iron-sulfur cluster assembly protein DGN02_00905 PF10609 NUBPL iron-transfer P-loop NTPase DGN02_00920 PF13091 PLD-like domain DGN02_00925 PF03061 Thioesterase superfamily DGN02_00965 PF02673 Bacitracin resistance protein BacA DGN02_00975 PF00120 Glutamine synthetase, catalytic domain DGN02_00975 PF03951 Glutamine synthetase, beta-Grasp domain DGN02_00980 PF00543 Nitrogen regulatory protein P-II DGN02_00985 PF00909 Ammonium Transporter Family DGN02_00990 PF00989 PAS fold DGN02_00990 PF00512 His Kinase A (phospho-acceptor) domain DGN02_00990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_00995 PF00158 Sigma-54 interaction domain DGN02_00995 PF00072 Response regulator receiver domain DGN02_00995 PF02954 Bacterial regulatory protein, Fis family DGN02_01000 PF00080 Copper/zinc superoxide dismutase (SODC) DGN02_01005 PF00080 Copper/zinc superoxide dismutase (SODC) DGN02_01010 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DGN02_01020 PF00108 Thiolase, N-terminal domain DGN02_01020 PF02803 Thiolase, C-terminal domain DGN02_01055 PF00581 Rhodanese-like domain DGN02_01060 PF02556 Preprotein translocase subunit SecB DGN02_01065 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DGN02_01065 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DGN02_01080 PF00205 Thiamine pyrophosphate enzyme, central domain DGN02_01080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DGN02_01080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DGN02_01085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_01090 PF02954 Bacterial regulatory protein, Fis family DGN02_01090 PF00072 Response regulator receiver domain DGN02_01090 PF00158 Sigma-54 interaction domain DGN02_01105 PF07690 Major Facilitator Superfamily DGN02_01110 PF00588 SpoU rRNA Methylase family DGN02_01125 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DGN02_01125 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DGN02_01135 PF00561 alpha/beta hydrolase fold DGN02_01140 PF03692 Putative zinc- or iron-chelating domain DGN02_01145 PF00501 AMP-binding enzyme DGN02_01150 PF00072 Response regulator receiver domain DGN02_01150 PF00486 Transcriptional regulatory protein, C terminal DGN02_01155 PF00144 Beta-lactamase DGN02_01160 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family DGN02_01180 PF01820 D-ala D-ala ligase N-terminus DGN02_01180 PF07478 D-ala D-ala ligase C-terminus DGN02_01195 PF03109 ABC1 family DGN02_01205 PF00849 RNA pseudouridylate synthase DGN02_01215 PF00472 RF-1 domain DGN02_01225 PF01112 Asparaginase DGN02_01230 PF01432 Peptidase family M3 DGN02_01235 PF00106 short chain dehydrogenase DGN02_01240 PF12706 Beta-lactamase superfamily domain DGN02_01265 PF12833 Helix-turn-helix domain DGN02_01270 PF00999 Sodium/hydrogen exchanger family DGN02_01275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_01275 PF03466 LysR substrate binding domain DGN02_01280 PF01274 Malate synthase DGN02_01285 PF00463 Isocitrate lyase family DGN02_01290 PF00990 Diguanylate cyclase, GGDEF domain DGN02_01310 PF00326 Prolyl oligopeptidase family DGN02_01315 PF00364 Biotin-requiring enzyme DGN02_01315 PF02785 Biotin carboxylase C-terminal domain DGN02_01315 PF00289 Biotin carboxylase, N-terminal domain DGN02_01315 PF18140 Propionyl-coenzyme A carboxylase BT domain DGN02_01315 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DGN02_01320 PF01039 Carboxyl transferase domain DGN02_01325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DGN02_01325 PF02770 Acyl-CoA dehydrogenase, middle domain DGN02_01325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DGN02_01380 PF02492 CobW/HypB/UreG, nucleotide-binding domain DGN02_01380 PF07683 Cobalamin synthesis protein cobW C-terminal domain DGN02_01400 PF03969 AFG1-like ATPase DGN02_01405 PF01047 MarR family DGN02_01410 PF02566 OsmC-like protein DGN02_01420 PF12697 Alpha/beta hydrolase family DGN02_01440 PF00107 Zinc-binding dehydrogenase DGN02_01440 PF16884 N-terminal domain of oxidoreductase DGN02_01445 PF00248 Aldo/keto reductase family DGN02_01455 PF00849 RNA pseudouridylate synthase DGN02_01460 PF00593 TonB dependent receptor DGN02_01470 PF08482 ATP-dependent helicase C-terminal DGN02_01470 PF04408 Helicase associated domain (HA2) DGN02_01470 PF00270 DEAD/DEAH box helicase DGN02_01470 PF00271 Helicase conserved C-terminal domain DGN02_01480 PF07308 Protein of unknown function (DUF1456) DGN02_01485 PF00576 HIUase/Transthyretin family DGN02_01490 PF13454 FAD-NAD(P)-binding DGN02_01495 PF09349 OHCU decarboxylase DGN02_01495 PF01014 Uricase DGN02_01510 PF00266 Aminotransferase class-V DGN02_01515 PF07687 Peptidase dimerisation domain DGN02_01515 PF01546 Peptidase family M20/M25/M40 DGN02_01520 PF03466 LysR substrate binding domain DGN02_01520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_01525 PF00561 alpha/beta hydrolase fold DGN02_01540 PF01425 Amidase DGN02_01545 PF01156 Inosine-uridine preferring nucleoside hydrolase DGN02_01555 PF00860 Permease family DGN02_01565 PF00111 2Fe-2S iron-sulfur cluster binding domain DGN02_01570 PF00355 Rieske [2Fe-2S] domain DGN02_01575 PF03466 LysR substrate binding domain DGN02_01575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_01580 PF01026 TatD related DNase DGN02_01590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_01590 PF03466 LysR substrate binding domain DGN02_01595 PF07690 Major Facilitator Superfamily DGN02_01605 PF00561 alpha/beta hydrolase fold DGN02_01605 PF08386 TAP-like protein DGN02_01610 PF02146 Sir2 family DGN02_01615 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DGN02_01620 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DGN02_01620 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DGN02_01630 PF00551 Formyl transferase DGN02_01635 PF00486 Transcriptional regulatory protein, C terminal DGN02_01635 PF00072 Response regulator receiver domain DGN02_01640 PF00512 His Kinase A (phospho-acceptor) domain DGN02_01640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_01640 PF00672 HAMP domain DGN02_01645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGN02_01645 PF00529 HlyD membrane-fusion protein of T1SS DGN02_01650 PF00873 AcrB/AcrD/AcrF family DGN02_01655 PF08139 Prokaryotic membrane lipoprotein lipid attachment site DGN02_01655 PF02321 Outer membrane efflux protein DGN02_01670 PF02677 Epoxyqueuosine reductase QueH DGN02_01675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_01675 PF03466 LysR substrate binding domain DGN02_01680 PF03358 NADPH-dependent FMN reductase DGN02_01690 PF08267 Cobalamin-independent synthase, N-terminal domain DGN02_01690 PF01717 Cobalamin-independent synthase, Catalytic domain DGN02_01695 PF03812 2-keto-3-deoxygluconate permease DGN02_01705 PF05368 NmrA-like family DGN02_01710 PF01638 HxlR-like helix-turn-helix DGN02_01740 PF00920 Dehydratase family DGN02_01755 PF00132 Bacterial transferase hexapeptide (six repeats) DGN02_01765 PF07690 Major Facilitator Superfamily DGN02_01770 PF11871 Domain of unknown function (DUF3391) DGN02_01770 PF01966 HD domain DGN02_01795 PF00171 Aldehyde dehydrogenase family DGN02_01805 PF01494 FAD binding domain DGN02_01815 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DGN02_01815 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DGN02_01820 PF00230 Major intrinsic protein DGN02_01825 PF01266 FAD dependent oxidoreductase DGN02_01825 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DGN02_01830 PF00455 DeoR C terminal sensor domain DGN02_01830 PF08220 DeoR-like helix-turn-helix domain DGN02_01840 PF00970 Oxidoreductase FAD-binding domain DGN02_01840 PF00111 2Fe-2S iron-sulfur cluster binding domain DGN02_01845 PF00355 Rieske [2Fe-2S] domain DGN02_01850 PF01144 Coenzyme A transferase DGN02_01855 PF01144 Coenzyme A transferase DGN02_01860 PF02803 Thiolase, C-terminal domain DGN02_01860 PF00108 Thiolase, N-terminal domain DGN02_01865 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal DGN02_01865 PF00775 Dioxygenase DGN02_01875 PF10397 Adenylosuccinate lyase C-terminus DGN02_01875 PF00206 Lyase DGN02_01880 PF12146 Serine aminopeptidase, S33 DGN02_01885 PF02627 Carboxymuconolactone decarboxylase family DGN02_01895 PF01614 Bacterial transcriptional regulator DGN02_01895 PF09339 IclR helix-turn-helix domain DGN02_01905 PF07859 alpha/beta hydrolase fold DGN02_01910 PF10677 Protein of unknown function (DUF2490) DGN02_01915 PF01134 Glucose inhibited division protein A DGN02_01915 PF13932 GidA associated domain DGN02_01925 PF00291 Pyridoxal-phosphate dependent enzyme DGN02_01945 PF13649 Methyltransferase domain DGN02_01955 PF12697 Alpha/beta hydrolase family DGN02_01965 PF00155 Aminotransferase class I and II DGN02_01970 PF04055 Radical SAM superfamily DGN02_01970 PF06968 Biotin and Thiamin Synthesis associated domain DGN02_01985 PF01040 UbiA prenyltransferase family DGN02_02005 PF05819 NolX protein DGN02_02040 PF01313 Bacterial export proteins, family 3 DGN02_02045 PF00813 FliP family DGN02_02060 PF00771 FHIPEP family DGN02_02065 PF01312 FlhB HrpN YscU SpaS Family DGN02_02080 PF01514 Secretory protein of YscJ/FliF family DGN02_02095 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DGN02_02095 PF02874 ATP synthase alpha/beta family, beta-barrel domain DGN02_02095 PF18269 T3SS EscN ATPase C-terminal domain DGN02_02105 PF01311 Bacterial export proteins, family 1 DGN02_02110 PF00263 Bacterial type II and III secretion system protein DGN02_02110 PF03958 Bacterial type II/III secretion system short domain DGN02_02120 PF01464 Transglycosylase SLT domain DGN02_02145 PF00884 Sulfatase DGN02_02155 PF03109 ABC1 family DGN02_02160 PF05661 Protein of unknown function (DUF808) DGN02_02165 PF00990 Diguanylate cyclase, GGDEF domain DGN02_02170 PF08323 Starch synthase catalytic domain DGN02_02170 PF00534 Glycosyl transferases group 1 DGN02_02175 PF00128 Alpha amylase, catalytic domain DGN02_02175 PF02806 Alpha amylase, C-terminal all-beta domain DGN02_02175 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DGN02_02180 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DGN02_02180 PF11941 Domain of unknown function (DUF3459) DGN02_02180 PF00128 Alpha amylase, catalytic domain DGN02_02185 PF02446 4-alpha-glucanotransferase DGN02_02190 PF00128 Alpha amylase, catalytic domain DGN02_02200 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DGN02_02200 PF00128 Alpha amylase, catalytic domain DGN02_02205 PF13460 NAD(P)H-binding DGN02_02210 PF03150 Di-haem cytochrome c peroxidase DGN02_02240 PF06903 VirK protein DGN02_02245 PF02321 Outer membrane efflux protein DGN02_02260 PF00873 AcrB/AcrD/AcrF family DGN02_02275 PF00270 DEAD/DEAH box helicase DGN02_02275 PF00271 Helicase conserved C-terminal domain DGN02_02280 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DGN02_02280 PF00364 Biotin-requiring enzyme DGN02_02290 PF02779 Transketolase, pyrimidine binding domain DGN02_02290 PF02780 Transketolase, C-terminal domain DGN02_02295 PF00676 Dehydrogenase E1 component DGN02_02310 PF03301 Tryptophan 2,3-dioxygenase DGN02_02315 PF00854 POT family DGN02_02325 PF01047 MarR family DGN02_02330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DGN02_02335 PF04209 homogentisate 1,2-dioxygenase DGN02_02355 PF03334 Na+/H+ antiporter subunit DGN02_02360 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DGN02_02370 PF00361 Proton-conducting membrane transporter DGN02_02375 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DGN02_02380 PF00361 Proton-conducting membrane transporter DGN02_02380 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter DGN02_02380 PF13244 Domain of unknown function (DUF4040) DGN02_02380 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DGN02_02395 PF07504 Fungalysin/Thermolysin Propeptide Motif DGN02_02395 PF01447 Thermolysin metallopeptidase, catalytic domain DGN02_02395 PF02868 Thermolysin metallopeptidase, alpha-helical domain DGN02_02395 PF01483 Proprotein convertase P-domain DGN02_02405 PF01259 SAICAR synthetase DGN02_02410 PF00226 DnaJ domain DGN02_02410 PF05099 Tellurite resistance protein TerB DGN02_02420 PF00834 Ribulose-phosphate 3 epimerase family DGN02_02425 PF00583 Acetyltransferase (GNAT) family DGN02_02430 PF00781 Diacylglycerol kinase catalytic domain DGN02_02435 PF00425 chorismate binding enzyme DGN02_02435 PF04715 Anthranilate synthase component I, N terminal region DGN02_02445 PF00117 Glutamine amidotransferase class-I DGN02_02455 PF02885 Glycosyl transferase family, helical bundle domain DGN02_02455 PF00591 Glycosyl transferase family, a/b domain DGN02_02460 PF00218 Indole-3-glycerol phosphate synthase DGN02_02470 PF00325 Bacterial regulatory proteins, crp family DGN02_02470 PF00027 Cyclic nucleotide-binding domain DGN02_02475 PF02675 S-adenosylmethionine decarboxylase DGN02_02480 PF00893 Small Multidrug Resistance protein DGN02_02485 PF03232 Ubiquinone biosynthesis protein COQ7 DGN02_02490 PF00572 Ribosomal protein L13 DGN02_02495 PF00380 Ribosomal protein S9/S16 DGN02_02510 PF00293 NUDIX domain DGN02_02520 PF00210 Ferritin-like domain DGN02_02525 PF00672 HAMP domain DGN02_02525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_02525 PF00512 His Kinase A (phospho-acceptor) domain DGN02_02525 PF01627 Hpt domain DGN02_02525 PF00072 Response regulator receiver domain DGN02_02525 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DGN02_02530 PF00072 Response regulator receiver domain DGN02_02530 PF00486 Transcriptional regulatory protein, C terminal DGN02_02550 PF01521 Iron-sulphur cluster biosynthesis DGN02_02560 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain DGN02_02560 PF09297 NADH pyrophosphatase zinc ribbon domain DGN02_02560 PF00293 NUDIX domain DGN02_02565 PF17113 Regulatory signalling modulator protein AmpE DGN02_02565 PF03186 CobD/Cbib protein DGN02_02585 PF07690 Major Facilitator Superfamily DGN02_02590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_02590 PF03466 LysR substrate binding domain DGN02_02595 PF07690 Major Facilitator Superfamily DGN02_02600 PF12805 FUSC-like inner membrane protein yccS DGN02_02605 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DGN02_02605 PF02843 Phosphoribosylglycinamide synthetase, C domain DGN02_02605 PF02844 Phosphoribosylglycinamide synthetase, N domain DGN02_02615 PF01808 AICARFT/IMPCHase bienzyme DGN02_02615 PF02142 MGS-like domain DGN02_02620 PF01066 CDP-alcohol phosphatidyltransferase DGN02_02625 PF12147 Putative methyltransferase DGN02_02625 PF12146 Serine aminopeptidase, S33 DGN02_02630 PF00782 Dual specificity phosphatase, catalytic domain DGN02_02660 PF02954 Bacterial regulatory protein, Fis family DGN02_02675 PF01381 Helix-turn-helix DGN02_02705 PF02785 Biotin carboxylase C-terminal domain DGN02_02705 PF00289 Biotin carboxylase, N-terminal domain DGN02_02705 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DGN02_02715 PF00364 Biotin-requiring enzyme DGN02_02720 PF01220 Dehydroquinase class II DGN02_02725 PF02683 Cytochrome C biogenesis protein transmembrane region DGN02_02725 PF11412 Disulphide bond corrector protein DsbC DGN02_02730 PF03091 CutA1 divalent ion tolerance protein DGN02_02740 PF04231 Endonuclease I DGN02_02745 PF00166 Chaperonin 10 Kd subunit DGN02_02750 PF00118 TCP-1/cpn60 chaperonin family DGN02_02760 PF00593 TonB dependent receptor DGN02_02760 PF07715 TonB-dependent Receptor Plug Domain DGN02_02765 PF00793 DAHP synthetase I family DGN02_02780 PF08450 SMP-30/Gluconolactonase/LRE-like region DGN02_02790 PF08335 GlnD PII-uridylyltransferase DGN02_02790 PF03710 Glutamate-ammonia ligase adenylyltransferase DGN02_02795 PF02592 Putative vitamin uptake transporter DGN02_02820 PF00881 Nitroreductase family DGN02_02825 PF04264 YceI-like domain DGN02_02835 PF00328 Histidine phosphatase superfamily (branch 2) DGN02_02850 PF16957 Malonate decarboxylase, alpha subunit, transporter DGN02_02855 PF06857 Malonate decarboxylase delta subunit (MdcD) DGN02_02860 PF01039 Carboxyl transferase domain DGN02_02870 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG DGN02_02875 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DGN02_02880 PF00698 Acyl transferase domain DGN02_02890 PF07729 FCD domain DGN02_02890 PF00392 Bacterial regulatory proteins, gntR family DGN02_02930 PF07745 Glycosyl hydrolase family 53 DGN02_02935 PF00456 Transketolase, thiamine diphosphate binding domain DGN02_02935 PF17831 Pyruvate dehydrogenase E1 component middle domain DGN02_02940 PF02384 N-6 DNA Methylase DGN02_02940 PF12161 HsdM N-terminal domain DGN02_02975 PF00872 Transposase, Mutator family DGN02_03060 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation DGN02_03060 PF10566 Glycoside hydrolase 97 DGN02_03060 PF14508 Glycosyl-hydrolase 97 N-terminal DGN02_03080 PF00106 short chain dehydrogenase DGN02_03095 PF00106 short chain dehydrogenase DGN02_03105 PF13409 Glutathione S-transferase, N-terminal domain DGN02_03140 PF00326 Prolyl oligopeptidase family DGN02_03140 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region DGN02_03150 PF07759 Protein of unknown function (DUF1615) DGN02_03190 PF03330 Lytic transglycolase DGN02_03195 PF00553 Cellulose binding domain DGN02_03195 PF01341 Glycosyl hydrolases family 6 DGN02_03195 PF00041 Fibronectin type III domain DGN02_03205 PF00324 Amino acid permease DGN02_03215 PF01544 CorA-like Mg2+ transporter protein DGN02_03225 PF01204 Trehalase DGN02_03240 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DGN02_03240 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DGN02_03265 PF03707 Bacterial signalling protein N terminal repeat DGN02_03265 PF00990 Diguanylate cyclase, GGDEF domain DGN02_03265 PF00563 EAL domain DGN02_03280 PF02203 Tar ligand binding domain homologue DGN02_03280 PF00672 HAMP domain DGN02_03280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_03285 PF00553 Cellulose binding domain DGN02_03285 PF00150 Cellulase (glycosyl hydrolase family 5) DGN02_03290 PF01740 STAS domain DGN02_03290 PF00916 Sulfate permease family DGN02_03295 PF00990 Diguanylate cyclase, GGDEF domain DGN02_03315 PF13632 Glycosyl transferase family group 2 DGN02_03325 PF07694 5TMR of 5TMR-LYT DGN02_03325 PF06580 Histidine kinase DGN02_03330 PF00072 Response regulator receiver domain DGN02_03330 PF04397 LytTr DNA-binding domain DGN02_03335 PF03900 Porphobilinogen deaminase, C-terminal domain DGN02_03335 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DGN02_03365 PF00326 Prolyl oligopeptidase family DGN02_03365 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DGN02_03370 PF00155 Aminotransferase class I and II DGN02_03375 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DGN02_03375 PF00326 Prolyl oligopeptidase family DGN02_03380 PF04304 Protein of unknown function (DUF454) DGN02_03390 PF01678 Diaminopimelate epimerase DGN02_03400 PF02899 Phage integrase, N-terminal SAM-like domain DGN02_03400 PF00589 Phage integrase family DGN02_03405 PF00227 Proteasome subunit DGN02_03410 PF00004 ATPase family associated with various cellular activities (AAA) DGN02_03410 PF07724 AAA domain (Cdc48 subfamily) DGN02_03410 PF10431 C-terminal, D2-small domain, of ClpB protein DGN02_03420 PF13673 Acetyltransferase (GNAT) domain DGN02_03425 PF13533 Biotin-lipoyl like DGN02_03435 PF01209 ubiE/COQ5 methyltransferase family DGN02_03440 PF03707 Bacterial signalling protein N terminal repeat DGN02_03440 PF00563 EAL domain DGN02_03440 PF00990 Diguanylate cyclase, GGDEF domain DGN02_03445 PF11838 ERAP1-like C-terminal domain DGN02_03445 PF01433 Peptidase family M1 domain DGN02_03465 PF13360 PQQ-like domain DGN02_03470 PF00497 Bacterial extracellular solute-binding proteins, family 3 DGN02_03485 PF00107 Zinc-binding dehydrogenase DGN02_03485 PF08240 Alcohol dehydrogenase GroES-like domain DGN02_03495 PF00158 Sigma-54 interaction domain DGN02_03495 PF02954 Bacterial regulatory protein, Fis family DGN02_03495 PF01590 GAF domain DGN02_03500 PF00294 pfkB family carbohydrate kinase DGN02_03510 PF04085 rod shape-determining protein MreC DGN02_03520 PF00905 Penicillin binding protein transpeptidase domain DGN02_03520 PF03717 Penicillin-binding Protein dimerisation domain DGN02_03525 PF01098 Cell cycle protein DGN02_03530 PF00295 Glycosyl hydrolases family 28 DGN02_03535 PF13406 Transglycosylase SLT domain DGN02_03540 PF05036 Sporulation related domain DGN02_03540 PF03330 Lytic transglycolase DGN02_03550 PF07943 Penicillin-binding protein 5, C-terminal domain DGN02_03550 PF00768 D-alanyl-D-alanine carboxypeptidase DGN02_03560 PF04359 Protein of unknown function (DUF493) DGN02_03565 PF03099 Biotin/lipoate A/B protein ligase family DGN02_03570 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DGN02_03570 PF04055 Radical SAM superfamily DGN02_03575 PF17804 Tail specific protease N-terminal domain DGN02_03575 PF03572 Peptidase family S41 DGN02_03575 PF00595 PDZ domain DGN02_03575 PF11818 C-terminal domain of tail specific protease (DUF3340) DGN02_03585 PF03466 LysR substrate binding domain DGN02_03585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_03595 PF00293 NUDIX domain DGN02_03595 PF01467 Cytidylyltransferase-like DGN02_03630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DGN02_03630 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DGN02_03635 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DGN02_03635 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DGN02_03640 PF04972 BON domain DGN02_03645 PF00512 His Kinase A (phospho-acceptor) domain DGN02_03645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_03645 PF01590 GAF domain DGN02_03645 PF00360 Phytochrome region DGN02_03645 PF08446 PAS fold DGN02_03650 PF00072 Response regulator receiver domain DGN02_03655 PF00512 His Kinase A (phospho-acceptor) domain DGN02_03655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_03660 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DGN02_03705 PF00263 Bacterial type II and III secretion system protein DGN02_03705 PF03958 Bacterial type II/III secretion system short domain DGN02_03710 PF00437 Type II/IV secretion system protein DGN02_03715 PF00482 Type II secretion system (T2SS), protein F DGN02_03720 PF07963 Prokaryotic N-terminal methylation motif DGN02_03720 PF08334 Type II secretion system (T2SS), protein G DGN02_03725 PF07963 Prokaryotic N-terminal methylation motif DGN02_03725 PF12019 Type II transport protein GspH DGN02_03730 PF02501 Type II secretion system (T2SS), protein I DGN02_03730 PF07963 Prokaryotic N-terminal methylation motif DGN02_03735 PF11612 Type II secretion system (T2SS), protein J DGN02_03735 PF07963 Prokaryotic N-terminal methylation motif DGN02_03740 PF03934 Type II secretion system (T2SS), protein K DGN02_03765 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DGN02_03765 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 DGN02_03765 PF00703 Glycosyl hydrolases family 2 DGN02_03765 PF02837 Glycosyl hydrolases family 2, sugar binding domain DGN02_03765 PF16355 Domain of unknown function (DUF4982) DGN02_03780 PF00392 Bacterial regulatory proteins, gntR family DGN02_03780 PF07702 UTRA domain DGN02_03785 PF07690 Major Facilitator Superfamily DGN02_03790 PF00356 Bacterial regulatory proteins, lacI family DGN02_03795 PF01380 SIS domain DGN02_03800 PF01979 Amidohydrolase family DGN02_03815 PF01743 Poly A polymerase head domain DGN02_03815 PF01966 HD domain DGN02_03815 PF12627 Probable RNA and SrmB- binding site of polymerase A DGN02_03820 PF05199 GMC oxidoreductase DGN02_03820 PF00732 GMC oxidoreductase DGN02_03825 PF00171 Aldehyde dehydrogenase family DGN02_03830 PF02028 BCCT, betaine/carnitine/choline family transporter DGN02_03845 PF01323 DSBA-like thioredoxin domain DGN02_03855 PF00034 Cytochrome c DGN02_03860 PF01926 50S ribosome-binding GTPase DGN02_03865 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DGN02_03865 PF00753 Metallo-beta-lactamase superfamily DGN02_03865 PF10996 Beta-Casp domain DGN02_03880 PF04107 Glutamate-cysteine ligase family 2(GCS2) DGN02_03885 PF00672 HAMP domain DGN02_03885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_03885 PF00512 His Kinase A (phospho-acceptor) domain DGN02_03890 PF00072 Response regulator receiver domain DGN02_03890 PF00486 Transcriptional regulatory protein, C terminal DGN02_03905 PF02583 Metal-sensitive transcriptional repressor DGN02_03910 PF08240 Alcohol dehydrogenase GroES-like domain DGN02_03910 PF00107 Zinc-binding dehydrogenase DGN02_03915 PF04828 Glutathione-dependent formaldehyde-activating enzyme DGN02_03920 PF00756 Putative esterase DGN02_03930 PF00392 Bacterial regulatory proteins, gntR family DGN02_03930 PF00155 Aminotransferase class I and II DGN02_03935 PF02567 Phenazine biosynthesis-like protein DGN02_03940 PF00892 EamA-like transporter family DGN02_03950 PF00005 ABC transporter DGN02_03950 PF12848 ABC transporter DGN02_03960 PF00464 Serine hydroxymethyltransferase DGN02_03965 PF03477 ATP cone domain DGN02_03975 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DGN02_03975 PF01872 RibD C-terminal domain DGN02_03985 PF00677 Lumazine binding domain DGN02_03990 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DGN02_03990 PF00925 GTP cyclohydrolase II DGN02_03995 PF00885 6,7-dimethyl-8-ribityllumazine synthase DGN02_04000 PF01029 NusB family DGN02_04005 PF00586 AIR synthase related protein, N-terminal domain DGN02_04005 PF02769 AIR synthase related protein, C-terminal domain DGN02_04030 PF03814 Potassium-transporting ATPase A subunit DGN02_04040 PF02669 K+-transporting ATPase, c chain DGN02_04045 PF13493 Domain of unknown function (DUF4118) DGN02_04045 PF13492 GAF domain DGN02_04045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_04045 PF00512 His Kinase A (phospho-acceptor) domain DGN02_04045 PF02702 Osmosensitive K+ channel His kinase sensor domain DGN02_04050 PF00072 Response regulator receiver domain DGN02_04050 PF00486 Transcriptional regulatory protein, C terminal DGN02_04055 PF01565 FAD binding domain DGN02_04055 PF02913 FAD linked oxidases, C-terminal domain DGN02_04060 PF04307 LexA-binding, inner membrane-associated putative hydrolase DGN02_04065 PF02021 Uncharacterised protein family UPF0102 DGN02_04075 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DGN02_04095 PF02381 MraZ protein, putative antitoxin-like DGN02_04100 PF01795 MraW methylase family DGN02_04105 PF04999 Cell division protein FtsL DGN02_04115 PF03717 Penicillin-binding Protein dimerisation domain DGN02_04115 PF00905 Penicillin binding protein transpeptidase domain DGN02_04120 PF01225 Mur ligase family, catalytic domain DGN02_04120 PF02875 Mur ligase family, glutamate ligase domain DGN02_04120 PF08245 Mur ligase middle domain DGN02_04125 PF08245 Mur ligase middle domain DGN02_04125 PF01225 Mur ligase family, catalytic domain DGN02_04125 PF02875 Mur ligase family, glutamate ligase domain DGN02_04130 PF00953 Glycosyl transferase family 4 DGN02_04135 PF01098 Cell cycle protein DGN02_04140 PF04101 Glycosyltransferase family 28 C-terminal domain DGN02_04140 PF03033 Glycosyltransferase family 28 N-terminal domain DGN02_04145 PF01225 Mur ligase family, catalytic domain DGN02_04145 PF02875 Mur ligase family, glutamate ligase domain DGN02_04145 PF08245 Mur ligase middle domain DGN02_04150 PF07478 D-ala D-ala ligase C-terminus DGN02_04150 PF01820 D-ala D-ala ligase N-terminus DGN02_04155 PF03799 Cell division protein FtsQ DGN02_04155 PF08478 POTRA domain, FtsQ-type DGN02_04160 PF02491 SHS2 domain inserted in FTSA DGN02_04165 PF12327 FtsZ family, C-terminal domain DGN02_04165 PF00091 Tubulin/FtsZ family, GTPase domain DGN02_04170 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DGN02_04180 PF08525 Opacity-associated protein A N-terminal motif DGN02_04180 PF01551 Peptidase family M23 DGN02_04180 PF01476 LysM domain DGN02_04185 PF07516 SecA Wing and Scaffold domain DGN02_04185 PF01043 SecA preprotein cross-linking domain DGN02_04185 PF07517 SecA DEAD-like domain DGN02_04185 PF02810 SEC-C motif DGN02_04190 PF00293 NUDIX domain DGN02_04200 PF02219 Methylenetetrahydrofolate reductase DGN02_04215 PF00550 Phosphopantetheine attachment site DGN02_04215 PF00698 Acyl transferase domain DGN02_04215 PF08659 KR domain DGN02_04215 PF16197 Ketoacyl-synthetase C-terminal extension DGN02_04215 PF00109 Beta-ketoacyl synthase, N-terminal domain DGN02_04215 PF08240 Alcohol dehydrogenase GroES-like domain DGN02_04215 PF02801 Beta-ketoacyl synthase, C-terminal domain DGN02_04215 PF14765 Polyketide synthase dehydratase DGN02_04215 PF00107 Zinc-binding dehydrogenase DGN02_04220 PF00082 Subtilase family DGN02_04220 PF09286 Pro-kumamolisin, activation domain DGN02_04230 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DGN02_04240 PF00128 Alpha amylase, catalytic domain DGN02_04265 PF00685 Sulfotransferase domain DGN02_04275 PF13649 Methyltransferase domain DGN02_04280 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DGN02_04280 PF05221 S-adenosyl-L-homocysteine hydrolase DGN02_04290 PF00311 Phosphoenolpyruvate carboxylase DGN02_04310 PF01389 OmpA-like transmembrane domain DGN02_04310 PF00691 OmpA family DGN02_04325 PF00328 Histidine phosphatase superfamily (branch 2) DGN02_04330 PF02772 S-adenosylmethionine synthetase, central domain DGN02_04330 PF00438 S-adenosylmethionine synthetase, N-terminal domain DGN02_04330 PF02773 S-adenosylmethionine synthetase, C-terminal domain DGN02_04340 PF13649 Methyltransferase domain DGN02_04345 PF01207 Dihydrouridine synthase (Dus) DGN02_04355 PF00294 pfkB family carbohydrate kinase DGN02_04360 PF07670 Nucleoside recognition DGN02_04360 PF07662 Na+ dependent nucleoside transporter C-terminus DGN02_04360 PF01773 Na+ dependent nucleoside transporter N-terminus DGN02_04370 PF00248 Aldo/keto reductase family DGN02_04400 PF00528 Binding-protein-dependent transport system inner membrane component DGN02_04405 PF00005 ABC transporter DGN02_04415 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DGN02_04425 PF00005 ABC transporter DGN02_04430 PF13472 GDSL-like Lipase/Acylhydrolase family DGN02_04435 PF00486 Transcriptional regulatory protein, C terminal DGN02_04435 PF00072 Response regulator receiver domain DGN02_04440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_04440 PF08521 Two-component sensor kinase N-terminal DGN02_04440 PF00512 His Kinase A (phospho-acceptor) domain DGN02_04450 PF01219 Prokaryotic diacylglycerol kinase DGN02_04470 PF01790 Prolipoprotein diacylglyceryl transferase DGN02_04475 PF00303 Thymidylate synthase DGN02_04485 PF00186 Dihydrofolate reductase DGN02_04490 PF00158 Sigma-54 interaction domain DGN02_04495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DGN02_04495 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DGN02_04500 PF00005 ABC transporter DGN02_04505 PF00528 Binding-protein-dependent transport system inner membrane component DGN02_04515 PF00296 Luciferase-like monooxygenase DGN02_04520 PF03358 NADPH-dependent FMN reductase DGN02_04535 PF00296 Luciferase-like monooxygenase DGN02_04540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DGN02_04545 PF00528 Binding-protein-dependent transport system inner membrane component DGN02_04550 PF00528 Binding-protein-dependent transport system inner membrane component DGN02_04550 PF12911 N-terminal TM domain of oligopeptide transport permease C DGN02_04555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DGN02_04555 PF00005 ABC transporter DGN02_04560 PF00149 Calcineurin-like phosphoesterase DGN02_04565 PF04379 ApaG domain DGN02_04570 PF00398 Ribosomal RNA adenine dimethylase DGN02_04575 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DGN02_04580 PF00639 PPIC-type PPIASE domain DGN02_04580 PF09312 SurA N-terminal domain DGN02_04585 PF04453 LPS transport system D DGN02_04585 PF03968 OstA-like protein DGN02_04590 PF00850 Histone deacetylase domain DGN02_04595 PF01923 Cobalamin adenosyltransferase DGN02_04610 PF01494 FAD binding domain DGN02_04615 PF01494 FAD binding domain DGN02_04635 PF07729 FCD domain DGN02_04635 PF00392 Bacterial regulatory proteins, gntR family DGN02_04640 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DGN02_04645 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit DGN02_04645 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DGN02_04650 PF03466 LysR substrate binding domain DGN02_04650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_04655 PF00501 AMP-binding enzyme DGN02_04655 PF13193 AMP-binding enzyme C-terminal domain DGN02_04660 PF00171 Aldehyde dehydrogenase family DGN02_04665 PF00378 Enoyl-CoA hydratase/isomerase DGN02_04690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DGN02_04690 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DGN02_04695 PF01728 FtsJ-like methyltransferase DGN02_04695 PF18125 RlmM ferredoxin-like domain DGN02_04720 PF00892 EamA-like transporter family DGN02_04730 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DGN02_04730 PF00749 tRNA synthetases class I (E and Q), catalytic domain DGN02_04745 PF00990 Diguanylate cyclase, GGDEF domain DGN02_04745 PF00072 Response regulator receiver domain DGN02_04750 PF17149 Periplasmic sensor domain found in signal transduction proteins DGN02_04750 PF00672 HAMP domain DGN02_04750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_04750 PF00512 His Kinase A (phospho-acceptor) domain DGN02_04750 PF01627 Hpt domain DGN02_04750 PF00072 Response regulator receiver domain DGN02_04755 PF00196 Bacterial regulatory proteins, luxR family DGN02_04755 PF00072 Response regulator receiver domain DGN02_04765 PF01625 Peptide methionine sulfoxide reductase DGN02_04775 PF00923 Transaldolase/Fructose-6-phosphate aldolase DGN02_04780 PF01272 Transcription elongation factor, GreA/GreB, C-term DGN02_04780 PF14760 Rnk N-terminus DGN02_04790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_04790 PF03466 LysR substrate binding domain DGN02_04795 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGN02_04795 PF13192 Thioredoxin domain DGN02_04800 PF10417 C-terminal domain of 1-Cys peroxiredoxin DGN02_04800 PF00578 AhpC/TSA family DGN02_04805 PF05175 Methyltransferase small domain DGN02_04805 PF17827 PrmC N-terminal domain DGN02_04810 PF00561 alpha/beta hydrolase fold DGN02_04820 PF00293 NUDIX domain DGN02_04825 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DGN02_04825 PF00476 DNA polymerase family A DGN02_04825 PF01612 3'-5' exonuclease DGN02_04825 PF01367 5'-3' exonuclease, C-terminal SAM fold DGN02_04855 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DGN02_04855 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DGN02_04855 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DGN02_04875 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DGN02_04880 PF02233 NAD(P) transhydrogenase beta subunit DGN02_04900 PF01063 Amino-transferase class IV DGN02_04905 PF04151 Bacterial pre-peptidase C-terminal domain DGN02_04905 PF00082 Subtilase family DGN02_04910 PF04151 Bacterial pre-peptidase C-terminal domain DGN02_04910 PF00082 Subtilase family DGN02_04915 PF00082 Subtilase family DGN02_04915 PF04151 Bacterial pre-peptidase C-terminal domain DGN02_04920 PF04073 Aminoacyl-tRNA editing domain DGN02_04930 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain DGN02_04930 PF17189 Glycosyl hydrolase family 30 beta sandwich domain DGN02_04940 PF03358 NADPH-dependent FMN reductase DGN02_04945 PF03631 Virulence factor BrkB DGN02_04950 PF08534 Redoxin DGN02_04965 PF03976 Polyphosphate kinase 2 (PPK2) DGN02_04970 PF00994 Probable molybdopterin binding domain DGN02_04980 PF03462 PCRF domain DGN02_04980 PF00472 RF-1 domain DGN02_04985 PF01488 Shikimate / quinate 5-dehydrogenase DGN02_04985 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DGN02_04985 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DGN02_04995 PF03550 Outer membrane lipoprotein LolB DGN02_05000 PF08544 GHMP kinases C terminal DGN02_05000 PF00288 GHMP kinases N terminal domain DGN02_05010 PF14572 Phosphoribosyl synthetase-associated domain DGN02_05010 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DGN02_05015 PF01386 Ribosomal L25p family DGN02_05015 PF14693 Ribosomal protein TL5, C-terminal domain DGN02_05020 PF01195 Peptidyl-tRNA hydrolase DGN02_05025 PF01926 50S ribosome-binding GTPase DGN02_05025 PF06071 Protein of unknown function (DUF933) DGN02_05045 PF03143 Elongation factor Tu C-terminal domain DGN02_05045 PF03144 Elongation factor Tu domain 2 DGN02_05045 PF00009 Elongation factor Tu GTP binding domain DGN02_05055 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DGN02_05060 PF00467 KOW motif DGN02_05060 PF02357 Transcription termination factor nusG DGN02_05065 PF03946 Ribosomal protein L11, N-terminal domain DGN02_05065 PF00298 Ribosomal protein L11, RNA binding domain DGN02_05070 PF00687 Ribosomal protein L1p/L10e family DGN02_05075 PF00466 Ribosomal protein L10 DGN02_05080 PF16320 Ribosomal protein L7/L12 dimerisation domain DGN02_05080 PF00542 Ribosomal protein L7/L12 C-terminal domain DGN02_05085 PF04565 RNA polymerase Rpb2, domain 3 DGN02_05085 PF10385 RNA polymerase beta subunit external 1 domain DGN02_05085 PF04561 RNA polymerase Rpb2, domain 2 DGN02_05085 PF04563 RNA polymerase beta subunit DGN02_05085 PF04560 RNA polymerase Rpb2, domain 7 DGN02_05085 PF00562 RNA polymerase Rpb2, domain 6 DGN02_05090 PF00623 RNA polymerase Rpb1, domain 2 DGN02_05090 PF04998 RNA polymerase Rpb1, domain 5 DGN02_05090 PF04997 RNA polymerase Rpb1, domain 1 DGN02_05090 PF04983 RNA polymerase Rpb1, domain 3 DGN02_05090 PF05000 RNA polymerase Rpb1, domain 4 DGN02_05095 PF00164 Ribosomal protein S12/S23 DGN02_05100 PF00177 Ribosomal protein S7p/S5e DGN02_05105 PF03144 Elongation factor Tu domain 2 DGN02_05105 PF00009 Elongation factor Tu GTP binding domain DGN02_05105 PF03764 Elongation factor G, domain IV DGN02_05105 PF00679 Elongation factor G C-terminus DGN02_05105 PF14492 Elongation Factor G, domain II DGN02_05110 PF03143 Elongation factor Tu C-terminal domain DGN02_05110 PF03144 Elongation factor Tu domain 2 DGN02_05110 PF00009 Elongation factor Tu GTP binding domain DGN02_05115 PF00338 Ribosomal protein S10p/S20e DGN02_05120 PF00297 Ribosomal protein L3 DGN02_05125 PF00573 Ribosomal protein L4/L1 family DGN02_05130 PF00276 Ribosomal protein L23 DGN02_05135 PF00181 Ribosomal Proteins L2, RNA binding domain DGN02_05135 PF03947 Ribosomal Proteins L2, C-terminal domain DGN02_05140 PF00203 Ribosomal protein S19 DGN02_05145 PF00237 Ribosomal protein L22p/L17e DGN02_05150 PF07650 KH domain DGN02_05150 PF00189 Ribosomal protein S3, C-terminal domain DGN02_05155 PF00252 Ribosomal protein L16p/L10e DGN02_05160 PF00831 Ribosomal L29 protein DGN02_05165 PF00366 Ribosomal protein S17 DGN02_05170 PF00238 Ribosomal protein L14p/L23e DGN02_05175 PF00467 KOW motif DGN02_05175 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DGN02_05180 PF00673 ribosomal L5P family C-terminus DGN02_05180 PF00281 Ribosomal protein L5 DGN02_05185 PF00253 Ribosomal protein S14p/S29e DGN02_05190 PF00410 Ribosomal protein S8 DGN02_05195 PF00347 Ribosomal protein L6 DGN02_05200 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DGN02_05205 PF00333 Ribosomal protein S5, N-terminal domain DGN02_05205 PF03719 Ribosomal protein S5, C-terminal domain DGN02_05210 PF00327 Ribosomal protein L30p/L7e DGN02_05215 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DGN02_05220 PF00344 SecY translocase DGN02_05225 PF00416 Ribosomal protein S13/S18 DGN02_05230 PF00411 Ribosomal protein S11 DGN02_05235 PF01479 S4 domain DGN02_05235 PF00163 Ribosomal protein S4/S9 N-terminal domain DGN02_05240 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DGN02_05240 PF01000 RNA polymerase Rpb3/RpoA insert domain DGN02_05240 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DGN02_05245 PF01196 Ribosomal protein L17 DGN02_05250 PF02600 Disulfide bond formation protein DsbB DGN02_05270 PF01474 Class-II DAHP synthetase family DGN02_05285 PF01425 Amidase DGN02_05295 PF03144 Elongation factor Tu domain 2 DGN02_05295 PF00009 Elongation factor Tu GTP binding domain DGN02_05295 PF00679 Elongation factor G C-terminus DGN02_05300 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DGN02_05305 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DGN02_05305 PF00056 lactate/malate dehydrogenase, NAD binding domain DGN02_05310 PF02798 Glutathione S-transferase, N-terminal domain DGN02_05310 PF00043 Glutathione S-transferase, C-terminal domain DGN02_05325 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGN02_05325 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DGN02_05340 PF00691 OmpA family DGN02_05340 PF05736 OprF membrane domain DGN02_05350 PF00849 RNA pseudouridylate synthase DGN02_05360 PF00155 Aminotransferase class I and II DGN02_05370 PF00528 Binding-protein-dependent transport system inner membrane component DGN02_05375 PF00528 Binding-protein-dependent transport system inner membrane component DGN02_05380 PF12857 TOBE-like domain DGN02_05380 PF00005 ABC transporter DGN02_05380 PF17850 CysA C-terminal regulatory domain DGN02_05390 PF08240 Alcohol dehydrogenase GroES-like domain DGN02_05390 PF00107 Zinc-binding dehydrogenase DGN02_05400 PF04185 Phosphoesterase family DGN02_05400 PF05506 Domain of unknown function (DUF756) DGN02_05405 PF10459 Peptidase S46 DGN02_05410 PF00300 Histidine phosphatase superfamily (branch 1) DGN02_05415 PF02875 Mur ligase family, glutamate ligase domain DGN02_05415 PF08245 Mur ligase middle domain DGN02_05430 PF00156 Phosphoribosyl transferase domain DGN02_05435 PF04305 Protein of unknown function (DUF455) DGN02_05455 PF00149 Calcineurin-like phosphoesterase DGN02_05460 PF01569 PAP2 superfamily DGN02_05465 PF13439 Glycosyltransferase Family 4 DGN02_05465 PF00534 Glycosyl transferases group 1 DGN02_05470 PF02541 Ppx/GppA phosphatase family DGN02_05475 PF02503 Polyphosphate kinase middle domain DGN02_05475 PF13090 Polyphosphate kinase C-terminal domain 2 DGN02_05475 PF17941 Polyphosphate kinase C-terminal domain 1 DGN02_05475 PF13089 Polyphosphate kinase N-terminal domain DGN02_05480 PF11808 Phosphate regulon sensor protein PhoR DGN02_05480 PF00512 His Kinase A (phospho-acceptor) domain DGN02_05480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_05480 PF00989 PAS fold DGN02_05485 PF00072 Response regulator receiver domain DGN02_05485 PF00486 Transcriptional regulatory protein, C terminal DGN02_05490 PF01435 Peptidase family M48 DGN02_05490 PF13181 Tetratricopeptide repeat DGN02_05495 PF00462 Glutaredoxin DGN02_05505 PF00180 Isocitrate/isopropylmalate dehydrogenase DGN02_05545 PF00872 Transposase, Mutator family DGN02_05705 PF00872 Transposase, Mutator family DGN02_05790 PF01555 DNA methylase DGN02_05835 PF01339 CheB methylesterase DGN02_05835 PF00072 Response regulator receiver domain DGN02_05840 PF00512 His Kinase A (phospho-acceptor) domain DGN02_05840 PF00989 PAS fold DGN02_05840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_05850 PF05698 Bacterial trigger factor protein (TF) C-terminus DGN02_05850 PF05697 Bacterial trigger factor protein (TF) DGN02_05855 PF00574 Clp protease DGN02_05860 PF07724 AAA domain (Cdc48 subfamily) DGN02_05860 PF10431 C-terminal, D2-small domain, of ClpB protein DGN02_05860 PF06689 ClpX C4-type zinc finger DGN02_05865 PF00004 ATPase family associated with various cellular activities (AAA) DGN02_05865 PF05362 Lon protease (S16) C-terminal proteolytic domain DGN02_05865 PF02190 ATP-dependent protease La (LON) substrate-binding domain DGN02_05870 PF00216 Bacterial DNA-binding protein DGN02_05905 PF16123 Hydroxyacylglutathione hydrolase C-terminus DGN02_05905 PF00753 Metallo-beta-lactamase superfamily DGN02_05915 PF00075 RNase H DGN02_05920 PF00929 Exonuclease DGN02_05940 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DGN02_05950 PF12706 Beta-lactamase superfamily domain DGN02_05950 PF00753 Metallo-beta-lactamase superfamily DGN02_05955 PF04055 Radical SAM superfamily DGN02_05955 PF06463 Molybdenum Cofactor Synthesis C DGN02_05965 PF01967 MoaC family DGN02_05970 PF02597 ThiS family DGN02_05975 PF02391 MoaE protein DGN02_05990 PF12169 DNA polymerase III subunits gamma and tau domain III DGN02_05990 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DGN02_05990 PF12170 DNA polymerase III tau subunit V interacting with alpha DGN02_05995 PF02575 YbaB/EbfC DNA-binding family DGN02_06000 PF13662 Toprim domain DGN02_06000 PF02132 RecR protein DGN02_06005 PF01230 HIT domain DGN02_06015 PF11992 Domain of unknown function (DUF3488) DGN02_06015 PF13559 Domain of unknown function (DUF4129) DGN02_06015 PF01841 Transglutaminase-like superfamily DGN02_06025 PF07726 ATPase family associated with various cellular activities (AAA) DGN02_06025 PF17863 AAA lid domain DGN02_06050 PF02545 Maf-like protein DGN02_06055 PF02620 Large ribosomal RNA subunit accumulation protein YceD DGN02_06060 PF01783 Ribosomal L32p protein family DGN02_06065 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DGN02_06065 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DGN02_06075 PF00698 Acyl transferase domain DGN02_06085 PF00550 Phosphopantetheine attachment site DGN02_06090 PF02801 Beta-ketoacyl synthase, C-terminal domain DGN02_06090 PF00109 Beta-ketoacyl synthase, N-terminal domain DGN02_06095 PF00425 chorismate binding enzyme DGN02_06095 PF04715 Anthranilate synthase component I, N terminal region DGN02_06100 PF02618 YceG-like family DGN02_06105 PF09115 DNA polymerase III, delta subunit, C terminal DGN02_06125 PF02954 Bacterial regulatory protein, Fis family DGN02_06125 PF06506 Propionate catabolism activator DGN02_06125 PF00158 Sigma-54 interaction domain DGN02_06135 PF00285 Citrate synthase, C-terminal domain DGN02_06140 PF00694 Aconitase C-terminal domain DGN02_06140 PF00330 Aconitase family (aconitate hydratase) DGN02_06150 PF04303 PrpF protein DGN02_06155 PF07715 TonB-dependent Receptor Plug Domain DGN02_06155 PF00593 TonB dependent receptor DGN02_06170 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain DGN02_06170 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain DGN02_06170 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain DGN02_06170 PF17962 Bacterial macroglobulin domain 6 DGN02_06170 PF01835 MG2 domain DGN02_06170 PF07703 Alpha-2-macroglobulin bait region domain DGN02_06170 PF11974 Bacterial alpha-2-macroglobulin MG3 domain DGN02_06170 PF00207 Alpha-2-macroglobulin family DGN02_06190 PF00905 Penicillin binding protein transpeptidase domain DGN02_06190 PF00912 Transglycosylase DGN02_06190 PF06832 Penicillin-Binding Protein C-terminus Family DGN02_06200 PF08534 Redoxin DGN02_06210 PF00226 DnaJ domain DGN02_06210 PF01556 DnaJ C terminal domain DGN02_06215 PF00072 Response regulator receiver domain DGN02_06220 PF12221 Bacterial membrane protein N terminal DGN02_06220 PF01145 SPFH domain / Band 7 family DGN02_06225 PF01145 SPFH domain / Band 7 family DGN02_06235 PF00709 Adenylosuccinate synthetase DGN02_06240 PF11838 ERAP1-like C-terminal domain DGN02_06240 PF01433 Peptidase family M1 domain DGN02_06245 PF01433 Peptidase family M1 domain DGN02_06255 PF00440 Bacterial regulatory proteins, tetR family DGN02_06320 PF13456 Reverse transcriptase-like DGN02_06320 PF00300 Histidine phosphatase superfamily (branch 1) DGN02_06325 PF01256 Carbohydrate kinase DGN02_06335 PF00723 Glycosyl hydrolases family 15 DGN02_06350 PF07971 Glycosyl hydrolase family 92 DGN02_06350 PF17678 Glycosyl hydrolase family 92 N-terminal domain DGN02_06360 PF00106 short chain dehydrogenase DGN02_06375 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGN02_06400 PF17755 UvrA DNA-binding domain DGN02_06405 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DGN02_06405 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DGN02_06410 PF00941 FAD binding domain in molybdopterin dehydrogenase DGN02_06410 PF03450 CO dehydrogenase flavoprotein C-terminal domain DGN02_06415 PF00111 2Fe-2S iron-sulfur cluster binding domain DGN02_06415 PF01799 [2Fe-2S] binding domain DGN02_06450 PF00717 Peptidase S24-like DGN02_06450 PF01726 LexA DNA binding domain DGN02_06465 PF07733 Bacterial DNA polymerase III alpha NTPase domain DGN02_06465 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DGN02_06465 PF14579 Helix-hairpin-helix motif DGN02_06465 PF02811 PHP domain DGN02_06480 PF03169 OPT oligopeptide transporter protein DGN02_06495 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region DGN02_06495 PF00326 Prolyl oligopeptidase family DGN02_06495 PF07676 WD40-like Beta Propeller Repeat DGN02_06515 PF02311 AraC-like ligand binding domain DGN02_06515 PF12833 Helix-turn-helix domain DGN02_06545 PF00199 Catalase DGN02_06545 PF06628 Catalase-related immune-responsive DGN02_06545 PF18011 C-terminal domain found in long catalases DGN02_06550 PF00248 Aldo/keto reductase family DGN02_06555 PF00135 Carboxylesterase family DGN02_06560 PF02347 Glycine cleavage system P-protein DGN02_06565 PF07690 Major Facilitator Superfamily DGN02_06580 PF08019 Phosphoethanolamine transferase EptA/EptB DGN02_06580 PF00884 Sulfatase DGN02_06595 PF00072 Response regulator receiver domain DGN02_06595 PF00486 Transcriptional regulatory protein, C terminal DGN02_06600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_06600 PF00512 His Kinase A (phospho-acceptor) domain DGN02_06600 PF08521 Two-component sensor kinase N-terminal DGN02_06610 PF03776 Septum formation topological specificity factor MinE DGN02_06615 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DGN02_06620 PF03775 Septum formation inhibitor MinC, C-terminal domain DGN02_06620 PF05209 Septum formation inhibitor MinC, N-terminal domain DGN02_06635 PF07730 Histidine kinase DGN02_06640 PF00072 Response regulator receiver domain DGN02_06640 PF00196 Bacterial regulatory proteins, luxR family DGN02_06655 PF00730 HhH-GPD superfamily base excision DNA repair protein DGN02_06685 PF02222 ATP-grasp domain DGN02_06695 PF04377 Arginine-tRNA-protein transferase, C terminus DGN02_06695 PF04376 Arginine-tRNA-protein transferase, N terminus DGN02_06720 PF00378 Enoyl-CoA hydratase/isomerase DGN02_06735 PF00005 ABC transporter DGN02_06735 PF17755 UvrA DNA-binding domain DGN02_06735 PF17760 UvrA interaction domain DGN02_06740 PF00829 Ribosomal prokaryotic L21 protein DGN02_06745 PF01016 Ribosomal L27 protein DGN02_06750 PF01926 50S ribosome-binding GTPase DGN02_06750 PF01018 GTP1/OBG DGN02_06755 PF01649 Ribosomal protein S20 DGN02_06760 PF03023 Lipid II flippase MurJ DGN02_06765 PF06574 FAD synthetase DGN02_06765 PF01687 Riboflavin kinase DGN02_06770 PF08264 Anticodon-binding domain of tRNA DGN02_06770 PF00133 tRNA synthetases class I (I, L, M and V) DGN02_06770 PF06827 Zinc finger found in FPG and IleRS DGN02_06775 PF01252 Signal peptidase (SPase) II DGN02_06780 PF02401 LytB protein DGN02_06790 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DGN02_06790 PF06481 COX Aromatic Rich Motif DGN02_06795 PF00115 Cytochrome C and Quinol oxidase polypeptide I DGN02_06800 PF00510 Cytochrome c oxidase subunit III DGN02_06805 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DGN02_06815 PF18073 Rubredoxin metal binding domain DGN02_06820 PF05656 Protein of unknown function (DUF805) DGN02_06830 PF12833 Helix-turn-helix domain DGN02_06835 PF00183 Hsp90 protein DGN02_06835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_06845 PF08678 Rsbr N terminal DGN02_06845 PF01740 STAS domain DGN02_06850 PF01740 STAS domain DGN02_06855 PF13581 Histidine kinase-like ATPase domain DGN02_06865 PF01627 Hpt domain DGN02_06865 PF00512 His Kinase A (phospho-acceptor) domain DGN02_06865 PF00072 Response regulator receiver domain DGN02_06865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_06865 PF00672 HAMP domain DGN02_06865 PF17149 Periplasmic sensor domain found in signal transduction proteins DGN02_06870 PF00512 His Kinase A (phospho-acceptor) domain DGN02_06870 PF00072 Response regulator receiver domain DGN02_06870 PF08448 PAS fold DGN02_06870 PF13188 PAS domain DGN02_06870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_06875 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DGN02_06875 PF04616 Glycosyl hydrolases family 43 DGN02_06880 PF07715 TonB-dependent Receptor Plug Domain DGN02_06880 PF00593 TonB dependent receptor DGN02_06885 PF00085 Thioredoxin DGN02_06890 PF07237 Protein of unknown function (DUF1428) DGN02_06895 PF13493 Domain of unknown function (DUF4118) DGN02_06895 PF13492 GAF domain DGN02_06895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_06895 PF00512 His Kinase A (phospho-acceptor) domain DGN02_06895 PF02702 Osmosensitive K+ channel His kinase sensor domain DGN02_06900 PF01339 CheB methylesterase DGN02_06905 PF01739 CheR methyltransferase, SAM binding domain DGN02_06905 PF03705 CheR methyltransferase, all-alpha domain DGN02_06910 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DGN02_06910 PF00072 Response regulator receiver domain DGN02_06910 PF01627 Hpt domain DGN02_06910 PF00512 His Kinase A (phospho-acceptor) domain DGN02_06910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_06910 PF00672 HAMP domain DGN02_06915 PF00072 Response regulator receiver domain DGN02_06915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_06915 PF13426 PAS domain DGN02_06920 PF00072 Response regulator receiver domain DGN02_06930 PF06964 Alpha-L-arabinofuranosidase C-terminal domain DGN02_06935 PF01263 Aldose 1-epimerase DGN02_06940 PF01578 Cytochrome C assembly protein DGN02_06950 PF00448 SRP54-type protein, GTPase domain DGN02_06950 PF02881 SRP54-type protein, helical bundle domain DGN02_06950 PF02978 Signal peptide binding domain DGN02_06955 PF03060 Nitronate monooxygenase DGN02_06960 PF01063 Amino-transferase class IV DGN02_06965 PF00886 Ribosomal protein S16 DGN02_06970 PF01782 RimM N-terminal domain DGN02_06970 PF05239 PRC-barrel domain DGN02_06975 PF01746 tRNA (Guanine-1)-methyltransferase DGN02_06980 PF01245 Ribosomal protein L19 DGN02_06985 PF01554 MatE DGN02_07005 PF01479 S4 domain DGN02_07010 PF00141 Peroxidase DGN02_07020 PF05190 MutS family domain IV DGN02_07020 PF05192 MutS domain III DGN02_07020 PF05188 MutS domain II DGN02_07020 PF01624 MutS domain I DGN02_07020 PF00488 MutS domain V DGN02_07030 PF03527 RHS protein DGN02_07030 PF05593 RHS Repeat DGN02_07065 PF01527 Transposase DGN02_07085 PF16355 Domain of unknown function (DUF4982) DGN02_07085 PF13287 Fn3 associated DGN02_07085 PF02837 Glycosyl hydrolases family 2, sugar binding domain DGN02_07085 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DGN02_07085 PF00703 Glycosyl hydrolases family 2 DGN02_07090 PF07745 Glycosyl hydrolase family 53 DGN02_07100 PF09856 Predicted transcriptional regulator (DUF2083) DGN02_07100 PF06114 IrrE N-terminal-like domain DGN02_07100 PF01381 Helix-turn-helix DGN02_07105 PF00171 Aldehyde dehydrogenase family DGN02_07110 PF02770 Acyl-CoA dehydrogenase, middle domain DGN02_07110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DGN02_07110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DGN02_07115 PF00378 Enoyl-CoA hydratase/isomerase DGN02_07120 PF00378 Enoyl-CoA hydratase/isomerase DGN02_07125 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DGN02_07125 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DGN02_07130 PF01545 Cation efflux family DGN02_07150 PF13181 Tetratricopeptide repeat DGN02_07155 PF00593 TonB dependent receptor DGN02_07155 PF07715 TonB-dependent Receptor Plug Domain DGN02_07160 PF00378 Enoyl-CoA hydratase/isomerase DGN02_07160 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DGN02_07160 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DGN02_07165 PF04542 Sigma-70 region 2 DGN02_07165 PF08281 Sigma-70, region 4 DGN02_07175 PF13180 PDZ domain DGN02_07180 PF00679 Elongation factor G C-terminus DGN02_07180 PF00009 Elongation factor Tu GTP binding domain DGN02_07180 PF06421 GTP-binding protein LepA C-terminus DGN02_07180 PF03144 Elongation factor Tu domain 2 DGN02_07185 PF10502 Signal peptidase, peptidase S26 DGN02_07195 PF14622 Ribonuclease-III-like DGN02_07195 PF00035 Double-stranded RNA binding motif DGN02_07200 PF07650 KH domain DGN02_07200 PF01926 50S ribosome-binding GTPase DGN02_07205 PF02565 Recombination protein O C terminal DGN02_07205 PF11967 Recombination protein O N terminal DGN02_07215 PF05958 tRNA (Uracil-5-)-methyltransferase DGN02_07220 PF01928 CYTH domain DGN02_07225 PF01323 DSBA-like thioredoxin domain DGN02_07230 PF01593 Flavin containing amine oxidoreductase DGN02_07235 PF04244 Deoxyribodipyrimidine photo-lyase-related protein DGN02_07240 PF00933 Glycosyl hydrolase family 3 N terminal domain DGN02_07245 PF00156 Phosphoribosyl transferase domain DGN02_07250 PF01048 Phosphorylase superfamily DGN02_07255 PF00313 'Cold-shock' DNA-binding domain DGN02_07260 PF01494 FAD binding domain DGN02_07270 PF00270 DEAD/DEAH box helicase DGN02_07270 PF08494 DEAD/H associated DGN02_07270 PF00271 Helicase conserved C-terminal domain DGN02_07275 PF01068 ATP dependent DNA ligase domain DGN02_07275 PF04675 DNA ligase N terminus DGN02_07275 PF04679 ATP dependent DNA ligase C terminal region DGN02_07285 PF01068 ATP dependent DNA ligase domain DGN02_07285 PF04675 DNA ligase N terminus DGN02_07285 PF04679 ATP dependent DNA ligase C terminal region DGN02_07300 PF00990 Diguanylate cyclase, GGDEF domain DGN02_07300 PF00072 Response regulator receiver domain DGN02_07315 PF02803 Thiolase, C-terminal domain DGN02_07315 PF00108 Thiolase, N-terminal domain DGN02_07320 PF03797 Autotransporter beta-domain DGN02_07320 PF12951 Passenger-associated-transport-repeat DGN02_07320 PF00082 Subtilase family DGN02_07325 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DGN02_07325 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DGN02_07340 PF01863 Protein of unknown function DUF45 DGN02_07360 PF07043 Protein of unknown function (DUF1328) DGN02_07370 PF01258 Prokaryotic dksA/traR C4-type zinc finger DGN02_07395 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DGN02_07405 PF03831 PhnA domain DGN02_07405 PF08274 PhnA Zinc-Ribbon DGN02_07415 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DGN02_07420 PF07690 Major Facilitator Superfamily DGN02_07455 PF09924 Uncharacterised conserved protein (DUF2156) DGN02_07455 PF03706 Lysylphosphatidylglycerol synthase TM region DGN02_07465 PF01042 Endoribonuclease L-PSP DGN02_07510 PF04542 Sigma-70 region 2 DGN02_07510 PF04545 Sigma-70, region 4 DGN02_07535 PF04060 Putative Fe-S cluster DGN02_07545 PF01588 Putative tRNA binding domain DGN02_07545 PF09334 tRNA synthetases class I (M) DGN02_07560 PF00005 ABC transporter DGN02_07560 PF13732 Domain of unknown function (DUF4162) DGN02_07565 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DGN02_07570 PF00324 Amino acid permease DGN02_07575 PF02574 Homocysteine S-methyltransferase DGN02_07585 PF02592 Putative vitamin uptake transporter DGN02_07615 PF03551 Transcriptional regulator PadR-like family DGN02_07635 PF03653 Uncharacterised protein family (UPF0093) DGN02_07650 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DGN02_07655 PF14579 Helix-hairpin-helix motif DGN02_07655 PF01336 OB-fold nucleic acid binding domain DGN02_07655 PF02811 PHP domain DGN02_07655 PF07733 Bacterial DNA polymerase III alpha NTPase domain DGN02_07655 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DGN02_07660 PF01351 Ribonuclease HII DGN02_07665 PF02684 Lipid-A-disaccharide synthetase DGN02_07670 PF00132 Bacterial transferase hexapeptide (six repeats) DGN02_07670 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DGN02_07675 PF07977 FabA-like domain DGN02_07680 PF00132 Bacterial transferase hexapeptide (six repeats) DGN02_07680 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DGN02_07690 PF07244 Surface antigen variable number repeat DGN02_07690 PF01103 Surface antigen DGN02_07695 PF02163 Peptidase family M50 DGN02_07695 PF17820 PDZ domain DGN02_07700 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DGN02_07700 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DGN02_07700 PF13288 DXP reductoisomerase C-terminal domain DGN02_07710 PF01255 Putative undecaprenyl diphosphate synthase DGN02_07715 PF01765 Ribosome recycling factor DGN02_07720 PF00696 Amino acid kinase family DGN02_07725 PF00990 Diguanylate cyclase, GGDEF domain DGN02_07725 PF00072 Response regulator receiver domain DGN02_07730 PF00889 Elongation factor TS DGN02_07735 PF00318 Ribosomal protein S2 DGN02_07770 PF00557 Metallopeptidase family M24 DGN02_07775 PF08335 GlnD PII-uridylyltransferase DGN02_07775 PF01966 HD domain DGN02_07775 PF01909 Nucleotidyltransferase domain DGN02_07780 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DGN02_07780 PF14602 Hexapeptide repeat of succinyl-transferase DGN02_07780 PF00132 Bacterial transferase hexapeptide (six repeats) DGN02_07785 PF03960 ArsC family DGN02_07790 PF07687 Peptidase dimerisation domain DGN02_07790 PF01546 Peptidase family M20/M25/M40 DGN02_07795 PF00733 Asparagine synthase DGN02_07795 PF13537 Glutamine amidotransferase domain DGN02_07805 PF07715 TonB-dependent Receptor Plug Domain DGN02_07805 PF00593 TonB dependent receptor DGN02_07810 PF01804 Penicillin amidase DGN02_07815 PF00210 Ferritin-like domain DGN02_07820 PF05724 Thiopurine S-methyltransferase (TPMT) DGN02_07830 PF03989 DNA gyrase C-terminal domain, beta-propeller DGN02_07830 PF00521 DNA gyrase/topoisomerase IV, subunit A DGN02_07845 PF02321 Outer membrane efflux protein DGN02_07850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGN02_07850 PF00529 HlyD membrane-fusion protein of T1SS DGN02_07855 PF07690 Major Facilitator Superfamily DGN02_07865 PF14310 Fibronectin type III-like domain DGN02_07865 PF00933 Glycosyl hydrolase family 3 N terminal domain DGN02_07865 PF01915 Glycosyl hydrolase family 3 C-terminal domain DGN02_07875 PF00854 POT family DGN02_07900 PF12802 MarR family DGN02_07905 PF01432 Peptidase family M3 DGN02_07915 PF00255 Glutathione peroxidase DGN02_07920 PF00970 Oxidoreductase FAD-binding domain DGN02_07920 PF00175 Oxidoreductase NAD-binding domain DGN02_07925 PF00005 ABC transporter DGN02_07930 PF05683 Fumarase C-terminus DGN02_07930 PF05681 Fumarate hydratase (Fumerase) DGN02_07940 PF00484 Carbonic anhydrase DGN02_07945 PF02253 Phospholipase A1 DGN02_07955 PF00313 'Cold-shock' DNA-binding domain DGN02_07970 PF00899 ThiF family DGN02_07975 PF01026 TatD related DNase DGN02_07990 PF02770 Acyl-CoA dehydrogenase, middle domain DGN02_07990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DGN02_07990 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DGN02_08000 PF02798 Glutathione S-transferase, N-terminal domain DGN02_08000 PF00043 Glutathione S-transferase, C-terminal domain DGN02_08010 PF13537 Glutamine amidotransferase domain DGN02_08010 PF00733 Asparagine synthase DGN02_08015 PF03358 NADPH-dependent FMN reductase DGN02_08020 PF00772 DnaB-like helicase N terminal domain DGN02_08020 PF03796 DnaB-like helicase C terminal domain DGN02_08025 PF00875 DNA photolyase DGN02_08025 PF03441 FAD binding domain of DNA photolyase DGN02_08030 PF05736 OprF membrane domain DGN02_08030 PF00691 OmpA family DGN02_08035 PF03466 LysR substrate binding domain DGN02_08035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_08050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGN02_08055 PF00873 AcrB/AcrD/AcrF family DGN02_08060 PF00106 short chain dehydrogenase DGN02_08065 PF02321 Outer membrane efflux protein DGN02_08070 PF00990 Diguanylate cyclase, GGDEF domain DGN02_08080 PF00990 Diguanylate cyclase, GGDEF domain DGN02_08110 PF04002 RadC-like JAB domain DGN02_08155 PF00872 Transposase, Mutator family DGN02_08190 PF00872 Transposase, Mutator family DGN02_08210 PF00664 ABC transporter transmembrane region DGN02_08210 PF00005 ABC transporter DGN02_08210 PF03412 Peptidase C39 family DGN02_08220 PF07690 Major Facilitator Superfamily DGN02_08225 PF02794 RTX toxin acyltransferase family DGN02_08285 PF00082 Subtilase family DGN02_08290 PF01668 SmpB protein DGN02_08295 PF03364 Polyketide cyclase / dehydrase and lipid transport DGN02_08300 PF03658 RnfH family Ubiquitin DGN02_08305 PF04355 SmpA / OmlA family DGN02_08310 PF01475 Ferric uptake regulator family DGN02_08320 PF02463 RecF/RecN/SMC N terminal domain DGN02_08325 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DGN02_08325 PF01628 HrcA protein C terminal domain DGN02_08330 PF01025 GrpE DGN02_08335 PF00012 Hsp70 protein DGN02_08340 PF01556 DnaJ C terminal domain DGN02_08340 PF00684 DnaJ central domain DGN02_08340 PF00226 DnaJ domain DGN02_08350 PF08543 Phosphomethylpyrimidine kinase DGN02_08380 PF00664 ABC transporter transmembrane region DGN02_08380 PF00005 ABC transporter DGN02_08380 PF03412 Peptidase C39 family DGN02_08385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_08385 PF03466 LysR substrate binding domain DGN02_08395 PF00664 ABC transporter transmembrane region DGN02_08395 PF00005 ABC transporter DGN02_08400 PF01205 Uncharacterized protein family UPF0029 DGN02_08405 PF03641 Possible lysine decarboxylase DGN02_08410 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DGN02_08410 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGN02_08415 PF00364 Biotin-requiring enzyme DGN02_08415 PF02817 e3 binding domain DGN02_08415 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DGN02_08420 PF02779 Transketolase, pyrimidine binding domain DGN02_08420 PF00676 Dehydrogenase E1 component DGN02_08420 PF16078 2-oxoglutarate dehydrogenase N-terminus DGN02_08420 PF16870 2-oxoglutarate dehydrogenase C-terminal DGN02_08430 PF08007 Cupin superfamily protein DGN02_08440 PF08328 Adenylosuccinate lyase C-terminal DGN02_08440 PF00206 Lyase DGN02_08450 PF00571 CBS domain DGN02_08450 PF03471 Transporter associated domain DGN02_08450 PF01595 Cyclin M transmembrane N-terminal domain DGN02_08455 PF10415 Fumarase C C-terminus DGN02_08455 PF00206 Lyase DGN02_08485 PF00005 ABC transporter DGN02_08490 PF00392 Bacterial regulatory proteins, gntR family DGN02_08500 PF00255 Glutathione peroxidase DGN02_08505 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DGN02_08505 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DGN02_08510 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DGN02_08510 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DGN02_08510 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DGN02_08515 PF04102 SlyX DGN02_08530 PF00356 Bacterial regulatory proteins, lacI family DGN02_08535 PF07690 Major Facilitator Superfamily DGN02_08540 PF00294 pfkB family carbohydrate kinase DGN02_08550 PF02574 Homocysteine S-methyltransferase DGN02_08550 PF02607 B12 binding domain DGN02_08550 PF02965 Vitamin B12 dependent methionine synthase, activation domain DGN02_08550 PF02310 B12 binding domain DGN02_08550 PF00809 Pterin binding enzyme DGN02_08555 PF00809 Pterin binding enzyme DGN02_08555 PF02574 Homocysteine S-methyltransferase DGN02_08560 PF01209 ubiE/COQ5 methyltransferase family DGN02_08565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DGN02_08565 PF02770 Acyl-CoA dehydrogenase, middle domain DGN02_08565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DGN02_08580 PF02770 Acyl-CoA dehydrogenase, middle domain DGN02_08580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DGN02_08580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DGN02_08605 PF17876 Cold shock domain DGN02_08605 PF08461 Ribonuclease R winged-helix domain DGN02_08605 PF08206 Ribonuclease B OB domain DGN02_08605 PF00773 RNB domain DGN02_08605 PF00575 S1 RNA binding domain DGN02_08615 PF00588 SpoU rRNA Methylase family DGN02_08615 PF08032 RNA 2'-O ribose methyltransferase substrate binding DGN02_08620 PF00990 Diguanylate cyclase, GGDEF domain DGN02_08625 PF00929 Exonuclease DGN02_08635 PF01895 PhoU domain DGN02_08640 PF00005 ABC transporter DGN02_08645 PF00528 Binding-protein-dependent transport system inner membrane component DGN02_08650 PF00528 Binding-protein-dependent transport system inner membrane component DGN02_08655 PF12849 PBP superfamily domain DGN02_08660 PF12849 PBP superfamily domain DGN02_08675 PF00484 Carbonic anhydrase DGN02_08680 PF00916 Sulfate permease family DGN02_08680 PF01740 STAS domain DGN02_08685 PF00730 HhH-GPD superfamily base excision DNA repair protein DGN02_08685 PF10576 Iron-sulfur binding domain of endonuclease III DGN02_08685 PF00633 Helix-hairpin-helix motif DGN02_08695 PF00378 Enoyl-CoA hydratase/isomerase DGN02_08700 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DGN02_08700 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DGN02_08705 PF00293 NUDIX domain DGN02_08710 PF00581 Rhodanese-like domain DGN02_08740 PF12848 ABC transporter DGN02_08740 PF16326 ABC transporter C-terminal domain DGN02_08740 PF00005 ABC transporter DGN02_08750 PF10672 S-adenosylmethionine-dependent methyltransferase DGN02_08750 PF02926 THUMP domain DGN02_08750 PF01170 Putative RNA methylase family UPF0020 DGN02_08755 PF01513 ATP-NAD kinase DGN02_08780 PF08411 Exonuclease C-terminal DGN02_08780 PF00929 Exonuclease DGN02_08785 PF01494 FAD binding domain DGN02_08790 PF00266 Aminotransferase class-V DGN02_08800 PF06052 3-hydroxyanthranilic acid dioxygenase DGN02_08805 PF00484 Carbonic anhydrase DGN02_08835 PF00872 Transposase, Mutator family DGN02_08860 PF00072 Response regulator receiver domain DGN02_08860 PF00196 Bacterial regulatory proteins, luxR family DGN02_08900 PF00152 tRNA synthetases class II (D, K and N) DGN02_08900 PF01336 OB-fold nucleic acid binding domain DGN02_08910 PF01521 Iron-sulphur cluster biosynthesis DGN02_08915 PF01250 Ribosomal protein S6 DGN02_08920 PF01084 Ribosomal protein S18 DGN02_08925 PF03948 Ribosomal protein L9, C-terminal domain DGN02_08925 PF01281 Ribosomal protein L9, N-terminal domain DGN02_08935 PF02463 RecF/RecN/SMC N terminal domain DGN02_08940 PF04354 ZipA, C-terminal FtsZ-binding domain DGN02_08950 PF00155 Aminotransferase class I and II DGN02_08955 PF01653 NAD-dependent DNA ligase adenylation domain DGN02_08955 PF03120 NAD-dependent DNA ligase OB-fold domain DGN02_08955 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DGN02_08955 PF12826 Helix-hairpin-helix motif DGN02_08955 PF00533 BRCA1 C Terminus (BRCT) domain DGN02_08960 PF00152 tRNA synthetases class II (D, K and N) DGN02_08975 PF01008 Initiation factor 2 subunit family DGN02_08980 PF03989 DNA gyrase C-terminal domain, beta-propeller DGN02_08980 PF00521 DNA gyrase/topoisomerase IV, subunit A DGN02_08985 PF13360 PQQ-like domain DGN02_08995 PF01175 Urocanase Rossmann-like domain DGN02_08995 PF17392 Urocanase C-terminal domain DGN02_08995 PF17391 Urocanase N-terminal domain DGN02_09005 PF00221 Aromatic amino acid lyase DGN02_09010 PF07969 Amidohydrolase family DGN02_09025 PF07702 UTRA domain DGN02_09025 PF00392 Bacterial regulatory proteins, gntR family DGN02_09050 PF01794 Ferric reductase like transmembrane component DGN02_09055 PF00174 Oxidoreductase molybdopterin binding domain DGN02_09060 PF00266 Aminotransferase class-V DGN02_09065 PF01842 ACT domain DGN02_09065 PF01817 Chorismate mutase type II DGN02_09065 PF00800 Prephenate dehydratase DGN02_09070 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DGN02_09085 PF03544 Gram-negative bacterial TonB protein C-terminal DGN02_09090 PF02403 Seryl-tRNA synthetase N-terminal domain DGN02_09090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DGN02_09095 PF02525 Flavodoxin-like fold DGN02_09100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_09100 PF03466 LysR substrate binding domain DGN02_09170 PF00672 HAMP domain DGN02_09170 PF02203 Tar ligand binding domain homologue DGN02_09170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_09175 PF01494 FAD binding domain DGN02_09190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_09190 PF00512 His Kinase A (phospho-acceptor) domain DGN02_09190 PF08448 PAS fold DGN02_09190 PF13188 PAS domain DGN02_09190 PF00072 Response regulator receiver domain DGN02_09195 PF00672 HAMP domain DGN02_09195 PF00072 Response regulator receiver domain DGN02_09195 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DGN02_09195 PF00512 His Kinase A (phospho-acceptor) domain DGN02_09195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_09195 PF01627 Hpt domain DGN02_09205 PF06745 KaiC DGN02_09210 PF00072 Response regulator receiver domain DGN02_09210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_09210 PF13426 PAS domain DGN02_09220 PF03918 Cytochrome C biogenesis protein DGN02_09225 PF08534 Redoxin DGN02_09230 PF01578 Cytochrome C assembly protein DGN02_09230 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DGN02_09235 PF03100 CcmE DGN02_09240 PF04995 Heme exporter protein D (CcmD) DGN02_09245 PF01578 Cytochrome C assembly protein DGN02_09250 PF00082 Subtilase family DGN02_09260 PF08281 Sigma-70, region 4 DGN02_09260 PF04542 Sigma-70 region 2 DGN02_09275 PF00034 Cytochrome c DGN02_09290 PF05523 WxcM-like, C-terminal DGN02_09310 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DGN02_09315 PF01943 Polysaccharide biosynthesis protein DGN02_09320 PF00535 Glycosyl transferase family 2 DGN02_09335 PF08241 Methyltransferase domain DGN02_09370 PF00005 ABC transporter DGN02_09375 PF00005 ABC transporter DGN02_09375 PF00664 ABC transporter transmembrane region DGN02_09380 PF07690 Major Facilitator Superfamily DGN02_09385 PF00296 Luciferase-like monooxygenase DGN02_09400 PF00571 CBS domain DGN02_09400 PF03471 Transporter associated domain DGN02_09400 PF01595 Cyclin M transmembrane N-terminal domain DGN02_09415 PF01384 Phosphate transporter family DGN02_09430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_09430 PF00986 DNA gyrase B subunit, carboxyl terminus DGN02_09430 PF01751 Toprim domain DGN02_09430 PF00204 DNA gyrase B DGN02_09440 PF00117 Glutamine amidotransferase class-I DGN02_09440 PF06418 CTP synthase N-terminus DGN02_09445 PF00793 DAHP synthetase I family DGN02_09455 PF03952 Enolase, N-terminal domain DGN02_09455 PF00113 Enolase, C-terminal TIM barrel domain DGN02_09460 PF04977 Septum formation initiator DGN02_09465 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DGN02_09470 PF02542 YgbB family DGN02_09480 PF01713 Smr domain DGN02_09485 PF01975 Survival protein SurE DGN02_09495 PF09335 SNARE associated Golgi protein DGN02_09500 PF01551 Peptidase family M23 DGN02_09500 PF01476 LysM domain DGN02_09505 PF04430 Protein of unknown function (DUF498/DUF598) DGN02_09510 PF01985 CRS1 / YhbY (CRM) domain DGN02_09515 PF01728 FtsJ-like methyltransferase DGN02_09520 PF00004 ATPase family associated with various cellular activities (AAA) DGN02_09520 PF17862 AAA+ lid domain DGN02_09520 PF06480 FtsH Extracellular DGN02_09520 PF01434 Peptidase family M41 DGN02_09525 PF00809 Pterin binding enzyme DGN02_09535 PF17209 Hfq protein DGN02_09540 PF13167 GTP-binding GTPase N-terminal DGN02_09540 PF01926 50S ribosome-binding GTPase DGN02_09540 PF16360 GTP-binding GTPase Middle Region DGN02_09545 PF02464 Competence-damaged protein DGN02_09550 PF03109 ABC1 family DGN02_09555 PF00717 Peptidase S24-like DGN02_09555 PF01726 LexA DNA binding domain DGN02_09560 PF00154 recA bacterial DNA recombination protein DGN02_09570 PF02631 RecX family DGN02_09575 PF01411 tRNA synthetases class II (A) DGN02_09575 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DGN02_09575 PF02272 DHHA1 domain DGN02_09580 PF02599 Global regulator protein family DGN02_09595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_09595 PF08447 PAS fold DGN02_09595 PF13426 PAS domain DGN02_09600 PF17954 Quercetinase C-terminal cupin domain DGN02_09600 PF02678 Pirin DGN02_09605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_09605 PF03466 LysR substrate binding domain DGN02_09630 PF08543 Phosphomethylpyrimidine kinase DGN02_09645 PF02562 PhoH-like protein DGN02_09645 PF13638 PIN domain DGN02_09650 PF00578 AhpC/TSA family DGN02_09665 PF00701 Dihydrodipicolinate synthetase family DGN02_09675 PF11953 Domain of unknown function (DUF3470) DGN02_09675 PF00037 4Fe-4S binding domain DGN02_09680 PF05035 2-keto-3-deoxy-galactonokinase DGN02_09685 PF08450 SMP-30/Gluconolactonase/LRE-like region DGN02_09690 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DGN02_09690 PF13378 Enolase C-terminal domain-like DGN02_09695 PF01081 KDPG and KHG aldolase DGN02_09705 PF03466 LysR substrate binding domain DGN02_09705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_09720 PF00942 Cellulose binding domain DGN02_09720 PF03442 Carbohydrate binding domain X2 DGN02_09730 PF08532 Beta-galactosidase trimerisation domain DGN02_09730 PF02449 Beta-galactosidase DGN02_09730 PF08533 Beta-galactosidase C-terminal domain DGN02_09735 PF16338 Domain of unknown function (DUF4968) DGN02_09735 PF17137 Domain of unknown function (DUF5110) DGN02_09735 PF01055 Glycosyl hydrolases family 31 DGN02_09745 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DGN02_09745 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DGN02_09755 PF00083 Sugar (and other) transporter DGN02_09770 PF01520 N-acetylmuramoyl-L-alanine amidase DGN02_09775 PF02649 Type I GTP cyclohydrolase folE2 DGN02_09785 PF12627 Probable RNA and SrmB- binding site of polymerase A DGN02_09785 PF12626 Polymerase A arginine-rich C-terminus DGN02_09785 PF01743 Poly A polymerase head domain DGN02_09790 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DGN02_09795 PF02548 Ketopantoate hydroxymethyltransferase DGN02_09800 PF02569 Pantoate-beta-alanine ligase DGN02_09805 PF02261 Aspartate decarboxylase DGN02_09810 PF00342 Phosphoglucose isomerase DGN02_09830 PF14310 Fibronectin type III-like domain DGN02_09830 PF00933 Glycosyl hydrolase family 3 N terminal domain DGN02_09830 PF01915 Glycosyl hydrolase family 3 C-terminal domain DGN02_09840 PF00474 Sodium:solute symporter family DGN02_09845 PF00360 Phytochrome region DGN02_09845 PF00563 EAL domain DGN02_09845 PF01590 GAF domain DGN02_09845 PF00990 Diguanylate cyclase, GGDEF domain DGN02_09850 PF00150 Cellulase (glycosyl hydrolase family 5) DGN02_09850 PF02013 Cellulose or protein binding domain DGN02_09855 PF00072 Response regulator receiver domain DGN02_09865 PF04551 GcpE protein DGN02_09870 PF01569 PAP2 superfamily DGN02_09875 PF07690 Major Facilitator Superfamily DGN02_09880 PF01177 Asp/Glu/Hydantoin racemase DGN02_09890 PF00892 EamA-like transporter family DGN02_09895 PF01565 FAD binding domain DGN02_09895 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DGN02_09900 PF01180 Dihydroorotate dehydrogenase DGN02_09915 PF00171 Aldehyde dehydrogenase family DGN02_09935 PF00535 Glycosyl transferase family 2 DGN02_09940 PF14883 Hypothetical glycosyl hydrolase family 13 DGN02_09940 PF01522 Polysaccharide deacetylase DGN02_09950 PF17287 POTRA domain DGN02_09950 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DGN02_09950 PF08479 POTRA domain, ShlB-type DGN02_10000 PF03073 TspO/MBR family DGN02_10005 PF00696 Amino acid kinase family DGN02_10005 PF01842 ACT domain DGN02_10005 PF13840 ACT domain DGN02_10005 PF00742 Homoserine dehydrogenase DGN02_10005 PF03447 Homoserine dehydrogenase, NAD binding domain DGN02_10010 PF08544 GHMP kinases C terminal DGN02_10010 PF00288 GHMP kinases N terminal domain DGN02_10020 PF14821 Threonine synthase N terminus DGN02_10020 PF00291 Pyridoxal-phosphate dependent enzyme DGN02_10030 PF13545 Crp-like helix-turn-helix domain DGN02_10030 PF00027 Cyclic nucleotide-binding domain DGN02_10035 PF03129 Anticodon binding domain DGN02_10035 PF13393 Histidyl-tRNA synthetase DGN02_10045 PF01634 ATP phosphoribosyltransferase DGN02_10045 PF08029 HisG, C-terminal domain DGN02_10050 PF00815 Histidinol dehydrogenase DGN02_10055 PF00155 Aminotransferase class I and II DGN02_10060 PF00475 Imidazoleglycerol-phosphate dehydratase DGN02_10065 PF00117 Glutamine amidotransferase class-I DGN02_10070 PF00977 Histidine biosynthesis protein DGN02_10075 PF00977 Histidine biosynthesis protein DGN02_10080 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DGN02_10080 PF01502 Phosphoribosyl-AMP cyclohydrolase DGN02_10100 PF03079 ARD/ARD' family DGN02_10105 PF00596 Class II Aldolase and Adducin N-terminal domain DGN02_10110 PF13520 Amino acid permease DGN02_10115 PF13520 Amino acid permease DGN02_10125 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DGN02_10125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DGN02_10130 PF01565 FAD binding domain DGN02_10130 PF02913 FAD linked oxidases, C-terminal domain DGN02_10150 PF01132 Elongation factor P (EF-P) OB domain DGN02_10150 PF08207 Elongation factor P (EF-P) KOW-like domain DGN02_10150 PF09285 Elongation factor P, C-terminal DGN02_10155 PF00106 short chain dehydrogenase DGN02_10160 PF00682 HMGL-like DGN02_10170 PF00378 Enoyl-CoA hydratase/isomerase DGN02_10180 PF07670 Nucleoside recognition DGN02_10180 PF07664 Ferrous iron transport protein B C terminus DGN02_10180 PF02421 Ferrous iron transport protein B DGN02_10195 PF00155 Aminotransferase class I and II DGN02_10200 PF03473 MOSC domain DGN02_10200 PF03475 3-alpha domain DGN02_10205 PF05173 Dihydrodipicolinate reductase, C-terminus DGN02_10205 PF01113 Dihydrodipicolinate reductase, N-terminus DGN02_10210 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DGN02_10210 PF00117 Glutamine amidotransferase class-I DGN02_10220 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DGN02_10220 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DGN02_10220 PF02142 MGS-like domain DGN02_10225 PF01272 Transcription elongation factor, GreA/GreB, C-term DGN02_10225 PF03449 Transcription elongation factor, N-terminal DGN02_10235 PF02272 DHHA1 domain DGN02_10235 PF17768 RecJ OB domain DGN02_10235 PF01368 DHH family DGN02_10245 PF04397 LytTr DNA-binding domain DGN02_10245 PF00072 Response regulator receiver domain DGN02_10255 PF00152 tRNA synthetases class II (D, K and N) DGN02_10255 PF01336 OB-fold nucleic acid binding domain DGN02_10260 PF00072 Response regulator receiver domain DGN02_10265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_10265 PF00512 His Kinase A (phospho-acceptor) domain DGN02_10265 PF01627 Hpt domain DGN02_10265 PF00072 Response regulator receiver domain DGN02_10270 PF01627 Hpt domain DGN02_10270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_10270 PF00072 Response regulator receiver domain DGN02_10270 PF00512 His Kinase A (phospho-acceptor) domain DGN02_10275 PF00378 Enoyl-CoA hydratase/isomerase DGN02_10280 PF00501 AMP-binding enzyme DGN02_10280 PF13193 AMP-binding enzyme C-terminal domain DGN02_10290 PF00694 Aconitase C-terminal domain DGN02_10290 PF00330 Aconitase family (aconitate hydratase) DGN02_10305 PF11791 Aconitate B N-terminal domain DGN02_10305 PF06434 Aconitate hydratase 2 N-terminus DGN02_10305 PF00330 Aconitase family (aconitate hydratase) DGN02_10310 PF00561 alpha/beta hydrolase fold DGN02_10315 PF00563 EAL domain DGN02_10315 PF03707 Bacterial signalling protein N terminal repeat DGN02_10315 PF00990 Diguanylate cyclase, GGDEF domain DGN02_10320 PF00072 Response regulator receiver domain DGN02_10320 PF01339 CheB methylesterase DGN02_10325 PF03975 CheD chemotactic sensory transduction DGN02_10330 PF01739 CheR methyltransferase, SAM binding domain DGN02_10330 PF03705 CheR methyltransferase, all-alpha domain DGN02_10335 PF02203 Tar ligand binding domain homologue DGN02_10335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_10335 PF00672 HAMP domain DGN02_10345 PF01584 CheW-like domain DGN02_10350 PF07317 Flagellar regulator YcgR DGN02_10350 PF07238 PilZ domain DGN02_10365 PF00672 HAMP domain DGN02_10365 PF02203 Tar ligand binding domain homologue DGN02_10365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_10375 PF00672 HAMP domain DGN02_10375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_10375 PF02203 Tar ligand binding domain homologue DGN02_10380 PF00672 HAMP domain DGN02_10380 PF02203 Tar ligand binding domain homologue DGN02_10380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_10385 PF02203 Tar ligand binding domain homologue DGN02_10385 PF00672 HAMP domain DGN02_10385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_10390 PF02203 Tar ligand binding domain homologue DGN02_10390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_10390 PF00672 HAMP domain DGN02_10400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_10400 PF00672 HAMP domain DGN02_10400 PF02203 Tar ligand binding domain homologue DGN02_10405 PF02203 Tar ligand binding domain homologue DGN02_10405 PF00672 HAMP domain DGN02_10405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_10410 PF02203 Tar ligand binding domain homologue DGN02_10410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_10410 PF00672 HAMP domain DGN02_10415 PF02203 Tar ligand binding domain homologue DGN02_10415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_10415 PF00672 HAMP domain DGN02_10430 PF02203 Tar ligand binding domain homologue DGN02_10430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_10430 PF00672 HAMP domain DGN02_10435 PF08269 Cache domain DGN02_10435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_10445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_10445 PF00672 HAMP domain DGN02_10450 PF01584 CheW-like domain DGN02_10450 PF09078 CheY binding DGN02_10450 PF02895 Signal transducing histidine kinase, homodimeric domain DGN02_10450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_10450 PF01627 Hpt domain DGN02_10455 PF00072 Response regulator receiver domain DGN02_10465 PF01584 CheW-like domain DGN02_10470 PF13614 AAA domain DGN02_10475 PF13677 Membrane MotB of proton-channel complex MotA/MotB DGN02_10475 PF00691 OmpA family DGN02_10480 PF01618 MotA/TolQ/ExbB proton channel family DGN02_10505 PF02463 RecF/RecN/SMC N terminal domain DGN02_10510 PF00145 C-5 cytosine-specific DNA methylase DGN02_10565 PF00872 Transposase, Mutator family DGN02_10580 PF00072 Response regulator receiver domain DGN02_10580 PF01627 Hpt domain DGN02_10580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_10580 PF02895 Signal transducing histidine kinase, homodimeric domain DGN02_10580 PF01584 CheW-like domain DGN02_10585 PF04344 Chemotaxis phosphatase, CheZ DGN02_10590 PF00072 Response regulator receiver domain DGN02_10595 PF04542 Sigma-70 region 2 DGN02_10595 PF04539 Sigma-70 region 3 DGN02_10595 PF04545 Sigma-70, region 4 DGN02_10600 PF10609 NUBPL iron-transfer P-loop NTPase DGN02_10605 PF00448 SRP54-type protein, GTPase domain DGN02_10610 PF00771 FHIPEP family DGN02_10615 PF01312 FlhB HrpN YscU SpaS Family DGN02_10620 PF00563 EAL domain DGN02_10620 PF03707 Bacterial signalling protein N terminal repeat DGN02_10620 PF00990 Diguanylate cyclase, GGDEF domain DGN02_10625 PF00990 Diguanylate cyclase, GGDEF domain DGN02_10635 PF00990 Diguanylate cyclase, GGDEF domain DGN02_10640 PF01311 Bacterial export proteins, family 1 DGN02_10645 PF01313 Bacterial export proteins, family 3 DGN02_10660 PF00813 FliP family DGN02_10665 PF04347 Flagellar biosynthesis protein, FliO DGN02_10670 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DGN02_10675 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DGN02_10675 PF02154 Flagellar motor switch protein FliM DGN02_10695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DGN02_10695 PF18269 T3SS EscN ATPase C-terminal domain DGN02_10705 PF14842 FliG N-terminal domain DGN02_10705 PF14841 FliG middle domain DGN02_10705 PF01706 FliG C-terminal domain DGN02_10710 PF08345 Flagellar M-ring protein C-terminal DGN02_10710 PF01514 Secretory protein of YscJ/FliF family DGN02_10715 PF02049 Flagellar hook-basal body complex protein FliE DGN02_10720 PF00534 Glycosyl transferases group 1 DGN02_10720 PF00535 Glycosyl transferase family 2 DGN02_10725 PF04230 Polysaccharide pyruvyl transferase DGN02_10760 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DGN02_10760 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DGN02_10770 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DGN02_10775 PF00158 Sigma-54 interaction domain DGN02_10775 PF06490 Flagellar regulatory protein FleQ DGN02_10775 PF02954 Bacterial regulatory protein, Fis family DGN02_10780 PF01339 CheB methylesterase DGN02_10780 PF00072 Response regulator receiver domain DGN02_10785 PF04963 Sigma-54 factor, core binding domain DGN02_10785 PF00309 Sigma-54 factor, Activator interacting domain (AID) DGN02_10785 PF04552 Sigma-54, DNA binding domain DGN02_10790 PF00072 Response regulator receiver domain DGN02_10790 PF00196 Bacterial regulatory proteins, luxR family DGN02_10805 PF02561 Flagellar protein FliS DGN02_10810 PF07195 Flagellar hook-associated protein 2 C-terminus DGN02_10810 PF02465 Flagellar hook-associated protein 2 N-terminus DGN02_10810 PF07196 Flagellin hook IN motif DGN02_10815 PF00700 Bacterial flagellin C-terminal helical region DGN02_10815 PF00669 Bacterial flagellin N-terminal helical region DGN02_10820 PF00700 Bacterial flagellin C-terminal helical region DGN02_10820 PF00669 Bacterial flagellin N-terminal helical region DGN02_10825 PF07196 Flagellin hook IN motif DGN02_10825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DGN02_10830 PF10135 Rod binding protein DGN02_10830 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DGN02_10835 PF02119 Flagellar P-ring protein DGN02_10840 PF02107 Flagellar L-ring protein DGN02_10845 PF00460 Flagella basal body rod protein DGN02_10845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DGN02_10850 PF00460 Flagella basal body rod protein DGN02_10850 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DGN02_10855 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DGN02_10855 PF07559 Flagellar basal body protein FlaE DGN02_10855 PF00460 Flagella basal body rod protein DGN02_10860 PF03963 Flagellar hook capping protein - N-terminal region DGN02_10865 PF00460 Flagella basal body rod protein DGN02_10865 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DGN02_10875 PF01584 CheW-like domain DGN02_10875 PF00072 Response regulator receiver domain DGN02_10895 PF00989 PAS fold DGN02_10895 PF13188 PAS domain DGN02_10895 PF00512 His Kinase A (phospho-acceptor) domain DGN02_10895 PF13426 PAS domain DGN02_10895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_10900 PF00563 EAL domain DGN02_10900 PF00990 Diguanylate cyclase, GGDEF domain DGN02_10900 PF03707 Bacterial signalling protein N terminal repeat DGN02_10905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_10905 PF07730 Histidine kinase DGN02_10910 PF00563 EAL domain DGN02_10910 PF03707 Bacterial signalling protein N terminal repeat DGN02_10910 PF00990 Diguanylate cyclase, GGDEF domain DGN02_10920 PF00672 HAMP domain DGN02_10920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_10920 PF12729 Four helix bundle sensory module for signal transduction DGN02_10925 PF04356 Protein of unknown function (DUF489) DGN02_10935 PF00293 NUDIX domain DGN02_10940 PF02617 ATP-dependent Clp protease adaptor protein ClpS DGN02_10945 PF00004 ATPase family associated with various cellular activities (AAA) DGN02_10945 PF07724 AAA domain (Cdc48 subfamily) DGN02_10945 PF17871 AAA lid domain DGN02_10945 PF02861 Clp amino terminal domain, pathogenicity island component DGN02_10945 PF10431 C-terminal, D2-small domain, of ClpB protein DGN02_10950 PF01176 Translation initiation factor 1A / IF-1 DGN02_10955 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DGN02_10965 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGN02_10970 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DGN02_10970 PF17854 FtsK alpha domain DGN02_10970 PF09397 Ftsk gamma domain DGN02_10970 PF01580 FtsK/SpoIIIE family DGN02_10980 PF03548 Outer membrane lipoprotein carrier protein LolA DGN02_10990 PF00004 ATPase family associated with various cellular activities (AAA) DGN02_10990 PF16193 AAA C-terminal domain DGN02_10990 PF12002 MgsA AAA+ ATPase C terminal DGN02_10995 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DGN02_11005 PF02803 Thiolase, C-terminal domain DGN02_11005 PF00108 Thiolase, N-terminal domain DGN02_11010 PF00378 Enoyl-CoA hydratase/isomerase DGN02_11010 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DGN02_11010 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DGN02_11020 PF00334 Nucleoside diphosphate kinase DGN02_11025 PF04055 Radical SAM superfamily DGN02_11035 PF13464 Domain of unknown function (DUF4115) DGN02_11045 PF01011 PQQ enzyme repeat DGN02_11045 PF13360 PQQ-like domain DGN02_11050 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DGN02_11050 PF01926 50S ribosome-binding GTPase DGN02_11055 PF03453 MoeA N-terminal region (domain I and II) DGN02_11055 PF00994 Probable molybdopterin binding domain DGN02_11055 PF03454 MoeA C-terminal region (domain IV) DGN02_11060 PF00899 ThiF family DGN02_11090 PF08240 Alcohol dehydrogenase GroES-like domain DGN02_11090 PF13823 Alcohol dehydrogenase GroES-associated DGN02_11090 PF00107 Zinc-binding dehydrogenase DGN02_11100 PF03372 Endonuclease/Exonuclease/phosphatase family DGN02_11110 PF00994 Probable molybdopterin binding domain DGN02_11110 PF03454 MoeA C-terminal region (domain IV) DGN02_11110 PF03453 MoeA N-terminal region (domain I and II) DGN02_11115 PF12804 MobA-like NTP transferase domain DGN02_11140 PF00561 alpha/beta hydrolase fold DGN02_11145 PF01566 Natural resistance-associated macrophage protein DGN02_11150 PF02742 Iron dependent repressor, metal binding and dimerisation domain DGN02_11150 PF01325 Iron dependent repressor, N-terminal DNA binding domain DGN02_11155 PF14437 MafB19-like deaminase DGN02_11160 PF00929 Exonuclease DGN02_11165 PF05552 Conserved TM helix DGN02_11165 PF00924 Mechanosensitive ion channel DGN02_11170 PF00391 PEP-utilising enzyme, mobile domain DGN02_11170 PF02896 PEP-utilising enzyme, TIM barrel domain DGN02_11170 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DGN02_11175 PF03618 Kinase/pyrophosphorylase DGN02_11195 PF01066 CDP-alcohol phosphatidyltransferase DGN02_11205 PF00561 alpha/beta hydrolase fold DGN02_11220 PF00355 Rieske [2Fe-2S] domain DGN02_11220 PF01266 FAD dependent oxidoreductase DGN02_11230 PF16921 Tex protein YqgF-like domain DGN02_11230 PF00575 S1 RNA binding domain DGN02_11230 PF09371 Tex-like protein N-terminal domain DGN02_11230 PF17674 HHH domain DGN02_11235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_11235 PF00512 His Kinase A (phospho-acceptor) domain DGN02_11235 PF09308 LuxQ, periplasmic DGN02_11235 PF00072 Response regulator receiver domain DGN02_11275 PF00034 Cytochrome c DGN02_11285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGN02_11290 PF00873 AcrB/AcrD/AcrF family DGN02_11295 PF00873 AcrB/AcrD/AcrF family DGN02_11300 PF01081 KDPG and KHG aldolase DGN02_11305 PF00920 Dehydratase family DGN02_11310 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DGN02_11315 PF02685 Glucokinase DGN02_11320 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DGN02_11320 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DGN02_11325 PF17912 MalK OB fold domain DGN02_11325 PF00005 ABC transporter DGN02_11330 PF01571 Aminomethyltransferase folate-binding domain DGN02_11340 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DGN02_11345 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DGN02_11350 PF00890 FAD binding domain DGN02_11350 PF02910 Fumarate reductase flavoprotein C-term DGN02_11360 PF13085 2Fe-2S iron-sulfur cluster binding domain DGN02_11365 PF03937 Flavinator of succinate dehydrogenase DGN02_11375 PF02687 FtsX-like permease family DGN02_11375 PF12704 MacB-like periplasmic core domain DGN02_11380 PF00005 ABC transporter DGN02_11390 PF00753 Metallo-beta-lactamase superfamily DGN02_11390 PF03772 Competence protein DGN02_11395 PF01618 MotA/TolQ/ExbB proton channel family DGN02_11400 PF02472 Biopolymer transport protein ExbD/TolR DGN02_11405 PF00664 ABC transporter transmembrane region DGN02_11405 PF00005 ABC transporter DGN02_11410 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DGN02_11415 PF02348 Cytidylyltransferase DGN02_11420 PF01451 Low molecular weight phosphotyrosine protein phosphatase DGN02_11430 PF01541 GIY-YIG catalytic domain DGN02_11430 PF02151 UvrB/uvrC motif DGN02_11430 PF08459 UvrC Helix-hairpin-helix N-terminal DGN02_11435 PF01066 CDP-alcohol phosphatidyltransferase DGN02_11445 PF00589 Phage integrase family DGN02_11445 PF13356 Arm DNA-binding domain DGN02_11460 PF03466 LysR substrate binding domain DGN02_11460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_11500 PF06761 Intracellular multiplication and human macrophage-killing DGN02_11500 PF14331 ImcF-related N-terminal domain DGN02_11500 PF06744 Type VI secretion protein IcmF C-terminal DGN02_11510 PF04972 BON domain DGN02_11510 PF00691 OmpA family DGN02_11520 PF06715 Gp5 C-terminal repeat (3 copies) DGN02_11520 PF04717 Type VI secretion system, phage-baseplate injector DGN02_11575 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) DGN02_11575 PF04717 Type VI secretion system, phage-baseplate injector DGN02_11575 PF13296 Putative type VI secretion system Rhs element Vgr DGN02_11600 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 DGN02_11605 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath DGN02_11620 PF05947 Type VI secretion system, TssF DGN02_11630 PF07724 AAA domain (Cdc48 subfamily) DGN02_11630 PF17871 AAA lid domain DGN02_11630 PF10431 C-terminal, D2-small domain, of ClpB protein DGN02_11630 PF00004 ATPase family associated with various cellular activities (AAA) DGN02_11640 PF04717 Type VI secretion system, phage-baseplate injector DGN02_11690 PF00872 Transposase, Mutator family DGN02_11740 PF07690 Major Facilitator Superfamily DGN02_11750 PF00293 NUDIX domain DGN02_11750 PF09297 NADH pyrophosphatase zinc ribbon domain DGN02_11755 PF00132 Bacterial transferase hexapeptide (six repeats) DGN02_11760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DGN02_11760 PF02770 Acyl-CoA dehydrogenase, middle domain DGN02_11760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DGN02_11775 PF07690 Major Facilitator Superfamily DGN02_11780 PF03466 LysR substrate binding domain DGN02_11780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_11990 PF05598 Transposase domain (DUF772) DGN02_11990 PF01609 Transposase DDE domain DGN02_12000 PF13406 Transglycosylase SLT domain DGN02_12015 PF00202 Aminotransferase class-III DGN02_12030 PF00145 C-5 cytosine-specific DNA methylase DGN02_12035 PF01131 DNA topoisomerase DGN02_12035 PF01751 Toprim domain DGN02_12040 PF00436 Single-strand binding protein family DGN02_12075 PF13614 AAA domain DGN02_12115 PF10544 T5orf172 domain DGN02_12145 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DGN02_12145 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DGN02_12145 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DGN02_12155 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DGN02_12165 PF00581 Rhodanese-like domain DGN02_12165 PF17773 UPF0176 acylphosphatase like domain DGN02_12170 PF00196 Bacterial regulatory proteins, luxR family DGN02_12170 PF00072 Response regulator receiver domain DGN02_12175 PF10150 Ribonuclease E/G family DGN02_12175 PF12111 Polyribonucleotide phosphorylase C terminal DGN02_12175 PF00575 S1 RNA binding domain DGN02_12180 PF01479 S4 domain DGN02_12180 PF00849 RNA pseudouridylate synthase DGN02_12185 PF11737 Protein of unknown function (DUF3300) DGN02_12190 PF02535 ZIP Zinc transporter DGN02_12200 PF01329 Pterin 4 alpha carbinolamine dehydratase DGN02_12205 PF01106 NifU-like domain DGN02_12255 PF08241 Methyltransferase domain DGN02_12255 PF12697 Alpha/beta hydrolase family DGN02_12260 PF05199 GMC oxidoreductase DGN02_12260 PF00732 GMC oxidoreductase DGN02_12265 PF00106 short chain dehydrogenase DGN02_12270 PF00975 Thioesterase domain DGN02_12275 PF03621 MbtH-like protein DGN02_12285 PF00005 ABC transporter DGN02_12290 PF00109 Beta-ketoacyl synthase, N-terminal domain DGN02_12290 PF02801 Beta-ketoacyl synthase, C-terminal domain DGN02_12295 PF14765 Polyketide synthase dehydratase DGN02_12295 PF00550 Phosphopantetheine attachment site DGN02_12295 PF08659 KR domain DGN02_12295 PF00668 Condensation domain DGN02_12295 PF00109 Beta-ketoacyl synthase, N-terminal domain DGN02_12295 PF16197 Ketoacyl-synthetase C-terminal extension DGN02_12295 PF13193 AMP-binding enzyme C-terminal domain DGN02_12295 PF00501 AMP-binding enzyme DGN02_12295 PF02801 Beta-ketoacyl synthase, C-terminal domain DGN02_12300 PF14765 Polyketide synthase dehydratase DGN02_12300 PF00550 Phosphopantetheine attachment site DGN02_12300 PF08242 Methyltransferase domain DGN02_12300 PF08659 KR domain DGN02_12300 PF02801 Beta-ketoacyl synthase, C-terminal domain DGN02_12300 PF00109 Beta-ketoacyl synthase, N-terminal domain DGN02_12300 PF16197 Ketoacyl-synthetase C-terminal extension DGN02_12305 PF08659 KR domain DGN02_12305 PF14765 Polyketide synthase dehydratase DGN02_12305 PF00550 Phosphopantetheine attachment site DGN02_12305 PF02801 Beta-ketoacyl synthase, C-terminal domain DGN02_12305 PF14765 Polyketide synthase dehydratase DGN02_12305 PF16197 Ketoacyl-synthetase C-terminal extension DGN02_12305 PF00109 Beta-ketoacyl synthase, N-terminal domain DGN02_12305 PF00501 AMP-binding enzyme DGN02_12305 PF00668 Condensation domain DGN02_12305 PF16197 Ketoacyl-synthetase C-terminal extension DGN02_12305 PF00109 Beta-ketoacyl synthase, N-terminal domain DGN02_12305 PF13193 AMP-binding enzyme C-terminal domain DGN02_12305 PF08659 KR domain DGN02_12305 PF00550 Phosphopantetheine attachment site DGN02_12305 PF00501 AMP-binding enzyme DGN02_12305 PF13193 AMP-binding enzyme C-terminal domain DGN02_12305 PF02801 Beta-ketoacyl synthase, C-terminal domain DGN02_12305 PF00668 Condensation domain DGN02_12310 PF14765 Polyketide synthase dehydratase DGN02_12310 PF08242 Methyltransferase domain DGN02_12310 PF00550 Phosphopantetheine attachment site DGN02_12310 PF02801 Beta-ketoacyl synthase, C-terminal domain DGN02_12310 PF00109 Beta-ketoacyl synthase, N-terminal domain DGN02_12310 PF08659 KR domain DGN02_12310 PF16197 Ketoacyl-synthetase C-terminal extension DGN02_12315 PF00550 Phosphopantetheine attachment site DGN02_12315 PF08242 Methyltransferase domain DGN02_12315 PF14765 Polyketide synthase dehydratase DGN02_12315 PF02801 Beta-ketoacyl synthase, C-terminal domain DGN02_12315 PF16197 Ketoacyl-synthetase C-terminal extension DGN02_12315 PF08659 KR domain DGN02_12315 PF00109 Beta-ketoacyl synthase, N-terminal domain DGN02_12325 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DGN02_12325 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DGN02_12330 PF00501 AMP-binding enzyme DGN02_12330 PF13193 AMP-binding enzyme C-terminal domain DGN02_12330 PF00668 Condensation domain DGN02_12330 PF00550 Phosphopantetheine attachment site DGN02_12330 PF00975 Thioesterase domain DGN02_12370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_12370 PF03466 LysR substrate binding domain DGN02_12375 PF08240 Alcohol dehydrogenase GroES-like domain DGN02_12375 PF00107 Zinc-binding dehydrogenase DGN02_12390 PF01965 DJ-1/PfpI family DGN02_12395 PF00881 Nitroreductase family DGN02_12410 PF05114 Protein of unknown function (DUF692) DGN02_12425 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 DGN02_12435 PF13581 Histidine kinase-like ATPase domain DGN02_12435 PF07536 HWE histidine kinase DGN02_12435 PF13426 PAS domain DGN02_12440 PF01494 FAD binding domain DGN02_12445 PF09335 SNARE associated Golgi protein DGN02_12455 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DGN02_12460 PF07995 Glucose / Sorbosone dehydrogenase DGN02_12470 PF00144 Beta-lactamase DGN02_12475 PF04397 LytTr DNA-binding domain DGN02_12475 PF00072 Response regulator receiver domain DGN02_12480 PF07694 5TMR of 5TMR-LYT DGN02_12480 PF13492 GAF domain DGN02_12480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_12480 PF06580 Histidine kinase DGN02_12490 PF03797 Autotransporter beta-domain DGN02_12490 PF00082 Subtilase family DGN02_12500 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGN02_12505 PF00873 AcrB/AcrD/AcrF family DGN02_12515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_12515 PF08448 PAS fold DGN02_12515 PF13426 PAS domain DGN02_12515 PF00072 Response regulator receiver domain DGN02_12515 PF00512 His Kinase A (phospho-acceptor) domain DGN02_12520 PF00196 Bacterial regulatory proteins, luxR family DGN02_12520 PF00072 Response regulator receiver domain DGN02_12525 PF12951 Passenger-associated-transport-repeat DGN02_12530 PF00563 EAL domain DGN02_12530 PF00990 Diguanylate cyclase, GGDEF domain DGN02_12530 PF08447 PAS fold DGN02_12530 PF08448 PAS fold DGN02_12550 PF05974 Domain of unknown function (DUF892) DGN02_12570 PF10414 Sirohaem synthase dimerisation region DGN02_12570 PF14824 Sirohaem biosynthesis protein central DGN02_12570 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DGN02_12585 PF05977 Transmembrane secretion effector DGN02_12590 PF07969 Amidohydrolase family DGN02_12600 PF00857 Isochorismatase family DGN02_12605 PF12833 Helix-turn-helix domain DGN02_12615 PF00196 Bacterial regulatory proteins, luxR family DGN02_12615 PF00072 Response regulator receiver domain DGN02_12630 PF03466 LysR substrate binding domain DGN02_12630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_12635 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus DGN02_12635 PF00361 Proton-conducting membrane transporter DGN02_12635 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DGN02_12640 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) DGN02_12645 PF00117 Glutamine amidotransferase class-I DGN02_12645 PF00958 GMP synthase C terminal domain DGN02_12645 PF02540 NAD synthase DGN02_12650 PF00571 CBS domain DGN02_12650 PF00478 IMP dehydrogenase / GMP reductase domain DGN02_12655 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DGN02_12655 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DGN02_12670 PF00999 Sodium/hydrogen exchanger family DGN02_12670 PF02254 TrkA-N domain DGN02_12675 PF00483 Nucleotidyl transferase DGN02_12680 PF02719 Polysaccharide biosynthesis protein DGN02_12685 PF00953 Glycosyl transferase family 4 DGN02_12690 PF18073 Rubredoxin metal binding domain DGN02_12700 PF00216 Bacterial DNA-binding protein DGN02_12705 PF00575 S1 RNA binding domain DGN02_12710 PF02224 Cytidylate kinase DGN02_12715 PF00444 Ribosomal protein L36 DGN02_12730 PF04371 Porphyromonas-type peptidyl-arginine deiminase DGN02_12735 PF00795 Carbon-nitrogen hydrolase DGN02_12760 PF00528 Binding-protein-dependent transport system inner membrane component DGN02_12765 PF00528 Binding-protein-dependent transport system inner membrane component DGN02_12785 PF00356 Bacterial regulatory proteins, lacI family DGN02_12795 PF03795 YCII-related domain DGN02_12800 PF02616 Segregation and condensation protein ScpA DGN02_12805 PF04079 Segregation and condensation complex subunit ScpB DGN02_12810 PF00849 RNA pseudouridylate synthase DGN02_12810 PF01479 S4 domain DGN02_12830 PF00795 Carbon-nitrogen hydrolase DGN02_12835 PF00155 Aminotransferase class I and II DGN02_12840 PF00005 ABC transporter DGN02_12845 PF03379 CcmB protein DGN02_12850 PF01578 Cytochrome C assembly protein DGN02_12860 PF03100 CcmE DGN02_12865 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DGN02_12865 PF01578 Cytochrome C assembly protein DGN02_12870 PF08534 Redoxin DGN02_12875 PF03918 Cytochrome C biogenesis protein DGN02_12885 PF00561 alpha/beta hydrolase fold DGN02_12890 PF00313 'Cold-shock' DNA-binding domain DGN02_12895 PF00664 ABC transporter transmembrane region DGN02_12895 PF00005 ABC transporter DGN02_12900 PF00664 ABC transporter transmembrane region DGN02_12900 PF00005 ABC transporter DGN02_12905 PF01654 Cytochrome bd terminal oxidase subunit I DGN02_12910 PF02322 Cytochrome bd terminal oxidase subunit II DGN02_12930 PF02129 X-Pro dipeptidyl-peptidase (S15 family) DGN02_12930 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain DGN02_12940 PF00171 Aldehyde dehydrogenase family DGN02_12945 PF01472 PUA domain DGN02_12945 PF00696 Amino acid kinase family DGN02_12955 PF00206 Lyase DGN02_12960 PF01118 Semialdehyde dehydrogenase, NAD binding domain DGN02_12970 PF00696 Amino acid kinase family DGN02_12970 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase DGN02_12975 PF07687 Peptidase dimerisation domain DGN02_12975 PF01546 Peptidase family M20/M25/M40 DGN02_12985 PF00764 Arginosuccinate synthase DGN02_12990 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DGN02_12990 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DGN02_13000 PF01406 tRNA synthetases class I (C) catalytic domain DGN02_13000 PF09190 DALR domain DGN02_13005 PF02657 Fe-S metabolism associated domain DGN02_13015 PF01258 Prokaryotic dksA/traR C4-type zinc finger DGN02_13020 PF01809 Putative membrane protein insertion efficiency factor DGN02_13025 PF01979 Amidohydrolase family DGN02_13030 PF01551 Peptidase family M23 DGN02_13030 PF08460 Bacterial SH3 domain DGN02_13040 PF06751 Ethanolamine ammonia lyase large subunit (EutB) DGN02_13045 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DGN02_13055 PF00753 Metallo-beta-lactamase superfamily DGN02_13080 PF00295 Glycosyl hydrolases family 28 DGN02_13090 PF13419 Haloacid dehalogenase-like hydrolase DGN02_13100 PF01979 Amidohydrolase family DGN02_13110 PF01132 Elongation factor P (EF-P) OB domain DGN02_13110 PF08207 Elongation factor P (EF-P) KOW-like domain DGN02_13110 PF09285 Elongation factor P, C-terminal DGN02_13115 PF04055 Radical SAM superfamily DGN02_13120 PF00563 EAL domain DGN02_13120 PF00990 Diguanylate cyclase, GGDEF domain DGN02_13120 PF03707 Bacterial signalling protein N terminal repeat DGN02_13120 PF13188 PAS domain DGN02_13130 PF00588 SpoU rRNA Methylase family DGN02_13135 PF00459 Inositol monophosphatase family DGN02_13140 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DGN02_13140 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DGN02_13145 PF00545 ribonuclease DGN02_13160 PF12848 ABC transporter DGN02_13160 PF16326 ABC transporter C-terminal domain DGN02_13160 PF00005 ABC transporter DGN02_13165 PF00271 Helicase conserved C-terminal domain DGN02_13165 PF03880 DbpA RNA binding domain DGN02_13165 PF00270 DEAD/DEAH box helicase DGN02_13170 PF00156 Phosphoribosyl transferase domain DGN02_13175 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DGN02_13180 PF07859 alpha/beta hydrolase fold DGN02_13185 PF02798 Glutathione S-transferase, N-terminal domain DGN02_13185 PF14497 Glutathione S-transferase, C-terminal domain DGN02_13190 PF00313 'Cold-shock' DNA-binding domain DGN02_13195 PF07152 YaeQ protein DGN02_13205 PF00990 Diguanylate cyclase, GGDEF domain DGN02_13205 PF00072 Response regulator receiver domain DGN02_13205 PF00563 EAL domain DGN02_13210 PF01435 Peptidase family M48 DGN02_13215 PF00749 tRNA synthetases class I (E and Q), catalytic domain DGN02_13220 PF00106 short chain dehydrogenase DGN02_13225 PF07879 PHB/PHA accumulation regulator DNA-binding domain DGN02_13225 PF05233 PHB accumulation regulatory domain DGN02_13245 PF08676 MutL C terminal dimerisation domain DGN02_13245 PF01119 DNA mismatch repair protein, C-terminal domain DGN02_13250 PF01520 N-acetylmuramoyl-L-alanine amidase DGN02_13250 PF11741 AMIN domain DGN02_13255 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DGN02_13260 PF01256 Carbohydrate kinase DGN02_13260 PF03853 YjeF-related protein N-terminus DGN02_13265 PF08331 Domain of unknown function (DUF1730) DGN02_13270 PF02601 Exonuclease VII, large subunit DGN02_13270 PF13742 OB-fold nucleic acid binding domain DGN02_13285 PF03781 Sulfatase-modifying factor enzyme 1 DGN02_13300 PF01612 3'-5' exonuclease DGN02_13300 PF00570 HRDC domain DGN02_13305 PF04679 ATP dependent DNA ligase C terminal region DGN02_13305 PF01068 ATP dependent DNA ligase domain DGN02_13305 PF13298 DNA polymerase Ligase (LigD) DGN02_13330 PF01584 CheW-like domain DGN02_13335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_13335 PF00672 HAMP domain DGN02_13335 PF02743 Cache domain DGN02_13340 PF02245 Methylpurine-DNA glycosylase (MPG) DGN02_13345 PF00270 DEAD/DEAH box helicase DGN02_13345 PF08494 DEAD/H associated DGN02_13345 PF00271 Helicase conserved C-terminal domain DGN02_13365 PF04386 Stringent starvation protein B DGN02_13370 PF00043 Glutathione S-transferase, C-terminal domain DGN02_13370 PF02798 Glutathione S-transferase, N-terminal domain DGN02_13375 PF02167 Cytochrome C1 family DGN02_13380 PF00033 Cytochrome b/b6/petB DGN02_13380 PF00032 Cytochrome b(C-terminal)/b6/petD DGN02_13385 PF00355 Rieske [2Fe-2S] domain DGN02_13385 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DGN02_13395 PF01464 Transglycosylase SLT domain DGN02_13410 PF04055 Radical SAM superfamily DGN02_13410 PF01938 TRAM domain DGN02_13410 PF00919 Uncharacterized protein family UPF0004 DGN02_13415 PF02562 PhoH-like protein DGN02_13425 PF02130 Uncharacterized protein family UPF0054 DGN02_13435 PF03471 Transporter associated domain DGN02_13435 PF00571 CBS domain DGN02_13450 PF00171 Aldehyde dehydrogenase family DGN02_13455 PF00528 Binding-protein-dependent transport system inner membrane component DGN02_13460 PF00528 Binding-protein-dependent transport system inner membrane component DGN02_13470 PF08402 TOBE domain DGN02_13470 PF00005 ABC transporter DGN02_13475 PF02321 Outer membrane efflux protein DGN02_13480 PF07690 Major Facilitator Superfamily DGN02_13485 PF13533 Biotin-lipoyl like DGN02_13490 PF13416 Bacterial extracellular solute-binding protein DGN02_13495 PF00202 Aminotransferase class-III DGN02_13500 PF00120 Glutamine synthetase, catalytic domain DGN02_13505 PF07722 Peptidase C26 DGN02_13510 PF00120 Glutamine synthetase, catalytic domain DGN02_13515 PF01266 FAD dependent oxidoreductase DGN02_13520 PF00072 Response regulator receiver domain DGN02_13520 PF00990 Diguanylate cyclase, GGDEF domain DGN02_13525 PF01814 Hemerythrin HHE cation binding domain DGN02_13530 PF07690 Major Facilitator Superfamily DGN02_13530 PF00083 Sugar (and other) transporter DGN02_13540 PF00384 Molybdopterin oxidoreductase DGN02_13545 PF02634 FdhD/NarQ family DGN02_13550 PF07690 Major Facilitator Superfamily DGN02_13565 PF00202 Aminotransferase class-III DGN02_13575 PF04286 Protein of unknown function (DUF445) DGN02_13580 PF00072 Response regulator receiver domain DGN02_13580 PF01627 Hpt domain DGN02_13580 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DGN02_13580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_13580 PF00672 HAMP domain DGN02_13580 PF00512 His Kinase A (phospho-acceptor) domain DGN02_13585 PF00072 Response regulator receiver domain DGN02_13595 PF07690 Major Facilitator Superfamily DGN02_13630 PF05088 Bacterial NAD-glutamate dehydrogenase DGN02_13640 PF00529 HlyD membrane-fusion protein of T1SS DGN02_13640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGN02_13645 PF00873 AcrB/AcrD/AcrF family DGN02_13650 PF00356 Bacterial regulatory proteins, lacI family DGN02_13655 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DGN02_13655 PF05524 PEP-utilising enzyme, N-terminal DGN02_13655 PF00391 PEP-utilising enzyme, mobile domain DGN02_13655 PF00381 PTS HPr component phosphorylation site DGN02_13655 PF02896 PEP-utilising enzyme, TIM barrel domain DGN02_13660 PF00294 pfkB family carbohydrate kinase DGN02_13665 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DGN02_13710 PF07549 SecD/SecF GG Motif DGN02_13710 PF02355 Protein export membrane protein DGN02_13715 PF07549 SecD/SecF GG Motif DGN02_13715 PF13721 SecD export protein N-terminal TM region DGN02_13715 PF02355 Protein export membrane protein DGN02_13720 PF02699 Preprotein translocase subunit DGN02_13725 PF01702 Queuine tRNA-ribosyltransferase DGN02_13730 PF02547 Queuosine biosynthesis protein DGN02_13735 PF01037 Lrp/AsnC ligand binding domain DGN02_13735 PF13404 AsnC-type helix-turn-helix domain DGN02_13770 PF02927 Cellulase N-terminal ig-like domain DGN02_13770 PF00759 Glycosyl hydrolase family 9 DGN02_13780 PF00037 4Fe-4S binding domain DGN02_13795 PF01467 Cytidylyltransferase-like DGN02_13805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_13805 PF00183 Hsp90 protein DGN02_13830 PF07715 TonB-dependent Receptor Plug Domain DGN02_13830 PF00593 TonB dependent receptor DGN02_13840 PF04616 Glycosyl hydrolases family 43 DGN02_13845 PF07532 Bacterial Ig-like domain (group 4) DGN02_13855 PF07715 TonB-dependent Receptor Plug Domain DGN02_13855 PF00593 TonB dependent receptor DGN02_13865 PF00082 Subtilase family DGN02_13865 PF09286 Pro-kumamolisin, activation domain DGN02_13895 PF13520 Amino acid permease DGN02_13910 PF00557 Metallopeptidase family M24 DGN02_13910 PF01321 Creatinase/Prolidase N-terminal domain DGN02_13915 PF00171 Aldehyde dehydrogenase family DGN02_13920 PF00701 Dihydrodipicolinate synthetase family DGN02_13925 PF04324 BFD-like [2Fe-2S] binding domain DGN02_13925 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGN02_13935 PF01266 FAD dependent oxidoreductase DGN02_13940 PF05544 Proline racemase DGN02_13950 PF02881 SRP54-type protein, helical bundle domain DGN02_13950 PF00448 SRP54-type protein, GTPase domain DGN02_13955 PF14815 NUDIX domain DGN02_13955 PF00730 HhH-GPD superfamily base excision DNA repair protein DGN02_13955 PF00633 Helix-hairpin-helix motif DGN02_13955 PF10576 Iron-sulfur binding domain of endonuclease III DGN02_13960 PF04362 Bacterial Fe(2+) trafficking DGN02_13965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_13965 PF13426 PAS domain DGN02_13965 PF00072 Response regulator receiver domain DGN02_13995 PF08212 Lipocalin-like domain DGN02_14005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DGN02_14005 PF12806 Acetyl-CoA dehydrogenase C-terminal like DGN02_14005 PF02770 Acyl-CoA dehydrogenase, middle domain DGN02_14005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DGN02_14015 PF02779 Transketolase, pyrimidine binding domain DGN02_14015 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DGN02_14015 PF02780 Transketolase, C-terminal domain DGN02_14035 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family DGN02_14040 PF16123 Hydroxyacylglutathione hydrolase C-terminus DGN02_14040 PF00753 Metallo-beta-lactamase superfamily DGN02_14045 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DGN02_14045 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DGN02_14060 PF03808 Glycosyl transferase WecB/TagA/CpsF family DGN02_14075 PF14667 Polysaccharide biosynthesis C-terminal domain DGN02_14085 PF13439 Glycosyltransferase Family 4 DGN02_14085 PF00534 Glycosyl transferases group 1 DGN02_14105 PF02397 Bacterial sugar transferase DGN02_14125 PF13411 MerR HTH family regulatory protein DGN02_14130 PF00216 Bacterial DNA-binding protein DGN02_14135 PF03483 B3/4 domain DGN02_14135 PF03147 Ferredoxin-fold anticodon binding domain DGN02_14135 PF01588 Putative tRNA binding domain DGN02_14135 PF03484 tRNA synthetase B5 domain DGN02_14135 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DGN02_14140 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DGN02_14140 PF01409 tRNA synthetases class II core domain (F) DGN02_14145 PF00453 Ribosomal protein L20 DGN02_14150 PF01632 Ribosomal protein L35 DGN02_14155 PF00707 Translation initiation factor IF-3, C-terminal domain DGN02_14155 PF05198 Translation initiation factor IF-3, N-terminal domain DGN02_14160 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DGN02_14160 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DGN02_14160 PF02824 TGS domain DGN02_14160 PF03129 Anticodon binding domain DGN02_14165 PF00356 Bacterial regulatory proteins, lacI family DGN02_14170 PF00128 Alpha amylase, catalytic domain DGN02_14170 PF00686 Starch binding domain DGN02_14175 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DGN02_14185 PF10566 Glycoside hydrolase 97 DGN02_14185 PF14508 Glycosyl-hydrolase 97 N-terminal DGN02_14185 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation DGN02_14200 PF00128 Alpha amylase, catalytic domain DGN02_14205 PF03135 CagE, TrbE, VirB family, component of type IV transporter system DGN02_14300 PF03135 CagE, TrbE, VirB family, component of type IV transporter system DGN02_14305 PF05101 Type IV secretory pathway, VirB3-like protein DGN02_14315 PF01464 Transglycosylase SLT domain DGN02_14320 PF00437 Type II/IV secretion system protein DGN02_14325 PF03743 Bacterial conjugation TrbI-like protein DGN02_14345 PF02534 Type IV secretory system Conjugative DNA transfer DGN02_14360 PF02151 UvrB/uvrC motif DGN02_14360 PF00271 Helicase conserved C-terminal domain DGN02_14360 PF04851 Type III restriction enzyme, res subunit DGN02_14360 PF12344 Ultra-violet resistance protein B DGN02_14360 PF17757 UvrB interaction domain DGN02_14365 PF07963 Prokaryotic N-terminal methylation motif DGN02_14365 PF00114 Pilin (bacterial filament) DGN02_14380 PF05567 Neisseria PilC beta-propeller domain DGN02_14400 PF07963 Prokaryotic N-terminal methylation motif DGN02_14405 PF03641 Possible lysine decarboxylase DGN02_14405 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases DGN02_14405 PF11892 Domain of unknown function (DUF3412) DGN02_14410 PF00593 TonB dependent receptor DGN02_14420 PF01914 MarC family integral membrane protein DGN02_14430 PF00462 Glutaredoxin DGN02_14435 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DGN02_14435 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DGN02_14440 PF02222 ATP-grasp domain DGN02_14440 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DGN02_14445 PF00731 AIR carboxylase DGN02_14455 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DGN02_14455 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DGN02_14465 PF01138 3' exoribonuclease family, domain 1 DGN02_14465 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DGN02_14465 PF00013 KH domain DGN02_14465 PF03725 3' exoribonuclease family, domain 2 DGN02_14465 PF00575 S1 RNA binding domain DGN02_14470 PF00312 Ribosomal protein S15 DGN02_14475 PF09157 Pseudouridine synthase II TruB, C-terminal DGN02_14475 PF16198 tRNA pseudouridylate synthase B C-terminal domain DGN02_14475 PF01509 TruB family pseudouridylate synthase (N terminal domain) DGN02_14480 PF02033 Ribosome-binding factor A DGN02_14485 PF00009 Elongation factor Tu GTP binding domain DGN02_14485 PF11987 Translation-initiation factor 2 DGN02_14485 PF08364 Bacterial translation initiation factor IF-2 associated region DGN02_14485 PF04760 Translation initiation factor IF-2, N-terminal region DGN02_14490 PF13184 NusA-like KH domain DGN02_14490 PF08529 NusA N-terminal domain DGN02_14490 PF00575 S1 RNA binding domain DGN02_14495 PF17384 RimP C-terminal SH3 domain DGN02_14495 PF02576 RimP N-terminal domain DGN02_14505 PF00361 Proton-conducting membrane transporter DGN02_14510 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus DGN02_14510 PF00361 Proton-conducting membrane transporter DGN02_14515 PF00361 Proton-conducting membrane transporter DGN02_14515 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DGN02_14520 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DGN02_14525 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DGN02_14530 PF12838 4Fe-4S dicluster domain DGN02_14535 PF00146 NADH dehydrogenase DGN02_14540 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal DGN02_14540 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DGN02_14540 PF00384 Molybdopterin oxidoreductase DGN02_14545 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DGN02_14545 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DGN02_14545 PF10531 SLBB domain DGN02_14555 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DGN02_14560 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DGN02_14565 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DGN02_14570 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DGN02_14585 PF00121 Triosephosphate isomerase DGN02_14590 PF00106 short chain dehydrogenase DGN02_14605 PF03707 Bacterial signalling protein N terminal repeat DGN02_14605 PF00990 Diguanylate cyclase, GGDEF domain DGN02_14605 PF00563 EAL domain DGN02_14620 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DGN02_14620 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DGN02_14620 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DGN02_14620 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DGN02_14625 PF17848 Acetyl-coA carboxylase zinc finger domain DGN02_14625 PF01039 Carboxyl transferase domain DGN02_14630 PF00290 Tryptophan synthase alpha chain DGN02_14640 PF00291 Pyridoxal-phosphate dependent enzyme DGN02_14645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_14645 PF03466 LysR substrate binding domain DGN02_14650 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DGN02_14655 PF01416 tRNA pseudouridine synthase DGN02_14670 PF01118 Semialdehyde dehydrogenase, NAD binding domain DGN02_14670 PF02774 Semialdehyde dehydrogenase, dimerisation domain DGN02_14675 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DGN02_14675 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DGN02_14680 PF01264 Chorismate synthase DGN02_14685 PF05175 Methyltransferase small domain DGN02_14690 PF02630 SCO1/SenC DGN02_14695 PF02666 Phosphatidylserine decarboxylase DGN02_14710 PF05872 Bacterial protein of unknown function (DUF853) DGN02_14715 PF00293 NUDIX domain DGN02_14730 PF01272 Transcription elongation factor, GreA/GreB, C-term DGN02_14730 PF03449 Transcription elongation factor, N-terminal DGN02_14735 PF04055 Radical SAM superfamily DGN02_14735 PF18693 TRAM domain DGN02_14735 PF00919 Uncharacterized protein family UPF0004 DGN02_14740 PF01738 Dienelactone hydrolase family DGN02_14760 PF00692 dUTPase DGN02_14770 PF10609 NUBPL iron-transfer P-loop NTPase DGN02_14775 PF00593 TonB dependent receptor DGN02_14775 PF07715 TonB-dependent Receptor Plug Domain DGN02_14795 PF05649 Peptidase family M13 DGN02_14795 PF01431 Peptidase family M13 DGN02_14800 PF01431 Peptidase family M13 DGN02_14800 PF05649 Peptidase family M13 DGN02_14820 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGN02_14820 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DGN02_14825 PF01266 FAD dependent oxidoreductase DGN02_14830 PF04235 Protein of unknown function (DUF418) DGN02_14835 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DGN02_14840 PF00877 NlpC/P60 family DGN02_14845 PF00877 NlpC/P60 family DGN02_14860 PF00375 Sodium:dicarboxylate symporter family DGN02_14865 PF00245 Alkaline phosphatase DGN02_14875 PF11734 TilS substrate C-terminal domain DGN02_14875 PF01171 PP-loop family DGN02_14875 PF09179 TilS substrate binding domain DGN02_14880 PF02609 Exonuclease VII small subunit DGN02_14885 PF00348 Polyprenyl synthetase DGN02_14890 PF14521 Lysine-specific metallo-endopeptidase DGN02_14900 PF01523 Putative modulator of DNA gyrase DGN02_14905 PF04751 Protein of unknown function (DUF615) DGN02_14910 PF01523 Putative modulator of DNA gyrase DGN02_14920 PF13502 AsmA-like C-terminal region DGN02_14920 PF13116 Protein of unknown function DGN02_14925 PF10150 Ribonuclease E/G family DGN02_14925 PF00575 S1 RNA binding domain DGN02_14930 PF02545 Maf-like protein DGN02_14935 PF04402 Protein of unknown function (DUF541) DGN02_14950 PF02590 Predicted SPOUT methyltransferase DGN02_14965 PF01467 Cytidylyltransferase-like DGN02_14980 PF00133 tRNA synthetases class I (I, L, M and V) DGN02_14980 PF13603 Leucyl-tRNA synthetase, Domain 2 DGN02_14980 PF08264 Anticodon-binding domain of tRNA DGN02_14990 PF00085 Thioredoxin DGN02_15025 PF04070 Domain of unknown function (DUF378) DGN02_15030 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DGN02_15040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_15040 PF03466 LysR substrate binding domain DGN02_15070 PF00664 ABC transporter transmembrane region DGN02_15070 PF00005 ABC transporter DGN02_15080 PF00873 AcrB/AcrD/AcrF family DGN02_15095 PF02321 Outer membrane efflux protein DGN02_15100 PF00486 Transcriptional regulatory protein, C terminal DGN02_15100 PF00072 Response regulator receiver domain DGN02_15105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_15105 PF00512 His Kinase A (phospho-acceptor) domain DGN02_15105 PF00672 HAMP domain DGN02_15110 PF00999 Sodium/hydrogen exchanger family DGN02_15115 PF00144 Beta-lactamase DGN02_15120 PF03737 Aldolase/RraA DGN02_15135 PF00990 Diguanylate cyclase, GGDEF domain DGN02_15140 PF01479 S4 domain DGN02_15140 PF00849 RNA pseudouridylate synthase DGN02_15145 PF08448 PAS fold DGN02_15145 PF00990 Diguanylate cyclase, GGDEF domain DGN02_15145 PF00563 EAL domain DGN02_15150 PF00271 Helicase conserved C-terminal domain DGN02_15150 PF00270 DEAD/DEAH box helicase DGN02_15150 PF03880 DbpA RNA binding domain DGN02_15155 PF04542 Sigma-70 region 2 DGN02_15155 PF08281 Sigma-70, region 4 DGN02_15200 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DGN02_15200 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DGN02_15215 PF00654 Voltage gated chloride channel DGN02_15220 PF00107 Zinc-binding dehydrogenase DGN02_15220 PF08240 Alcohol dehydrogenase GroES-like domain DGN02_15240 PF07715 TonB-dependent Receptor Plug Domain DGN02_15240 PF00593 TonB dependent receptor DGN02_15250 PF00082 Subtilase family DGN02_15250 PF01483 Proprotein convertase P-domain DGN02_15260 PF00248 Aldo/keto reductase family DGN02_15265 PF07690 Major Facilitator Superfamily DGN02_15270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_15270 PF03466 LysR substrate binding domain DGN02_15280 PF12833 Helix-turn-helix domain DGN02_15280 PF06719 AraC-type transcriptional regulator N-terminus DGN02_15290 PF00440 Bacterial regulatory proteins, tetR family DGN02_15290 PF16859 Tetracyclin repressor-like, C-terminal domain DGN02_15295 PF02321 Outer membrane efflux protein DGN02_15300 PF00873 AcrB/AcrD/AcrF family DGN02_15305 PF00529 HlyD membrane-fusion protein of T1SS DGN02_15305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGN02_15315 PF01475 Ferric uptake regulator family DGN02_15320 PF00749 tRNA synthetases class I (E and Q), catalytic domain DGN02_15345 PF06123 Inner membrane protein CreD DGN02_15360 PF00072 Response regulator receiver domain DGN02_15360 PF00486 Transcriptional regulatory protein, C terminal DGN02_15365 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DGN02_15375 PF00270 DEAD/DEAH box helicase DGN02_15375 PF00271 Helicase conserved C-terminal domain DGN02_15375 PF03461 TRCF domain DGN02_15375 PF17757 UvrB interaction domain DGN02_15375 PF02559 CarD-like/TRCF domain DGN02_15385 PF01584 CheW-like domain DGN02_15385 PF09078 CheY binding DGN02_15385 PF02895 Signal transducing histidine kinase, homodimeric domain DGN02_15385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_15385 PF01627 Hpt domain DGN02_15390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_15390 PF02203 Tar ligand binding domain homologue DGN02_15390 PF00672 HAMP domain DGN02_15395 PF01584 CheW-like domain DGN02_15400 PF03707 Bacterial signalling protein N terminal repeat DGN02_15400 PF00990 Diguanylate cyclase, GGDEF domain DGN02_15400 PF00563 EAL domain DGN02_15405 PF03705 CheR methyltransferase, all-alpha domain DGN02_15405 PF01739 CheR methyltransferase, SAM binding domain DGN02_15410 PF00072 Response regulator receiver domain DGN02_15410 PF01339 CheB methylesterase DGN02_15415 PF13091 PLD-like domain DGN02_15420 PF05649 Peptidase family M13 DGN02_15420 PF01431 Peptidase family M13 DGN02_15430 PF00300 Histidine phosphatase superfamily (branch 1) DGN02_15435 PF04493 Endonuclease V DGN02_15445 PF05726 Pirin C-terminal cupin domain DGN02_15445 PF02678 Pirin DGN02_15460 PF05726 Pirin C-terminal cupin domain DGN02_15460 PF02678 Pirin DGN02_15465 PF02554 Carbon starvation protein CstA DGN02_15465 PF13722 5TM C-terminal transporter carbon starvation CstA DGN02_15470 PF04328 Selenoprotein, putative DGN02_15520 PF13478 XdhC Rossmann domain DGN02_15520 PF02625 XdhC and CoxI family DGN02_15525 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DGN02_15525 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DGN02_15530 PF03450 CO dehydrogenase flavoprotein C-terminal domain DGN02_15530 PF00941 FAD binding domain in molybdopterin dehydrogenase DGN02_15535 PF00111 2Fe-2S iron-sulfur cluster binding domain DGN02_15535 PF01799 [2Fe-2S] binding domain DGN02_15535 PF10518 TAT (twin-arginine translocation) pathway signal sequence DGN02_15540 PF14765 Polyketide synthase dehydratase DGN02_15540 PF00550 Phosphopantetheine attachment site DGN02_15540 PF08659 KR domain DGN02_15540 PF02801 Beta-ketoacyl synthase, C-terminal domain DGN02_15540 PF00109 Beta-ketoacyl synthase, N-terminal domain DGN02_15540 PF00107 Zinc-binding dehydrogenase DGN02_15540 PF08240 Alcohol dehydrogenase GroES-like domain DGN02_15540 PF00698 Acyl transferase domain DGN02_15540 PF16197 Ketoacyl-synthetase C-terminal extension DGN02_15545 PF00990 Diguanylate cyclase, GGDEF domain DGN02_15545 PF00563 EAL domain DGN02_15545 PF00360 Phytochrome region DGN02_15545 PF01590 GAF domain DGN02_15550 PF00436 Single-strand binding protein family DGN02_15555 PF00348 Polyprenyl synthetase DGN02_15570 PF08245 Mur ligase middle domain DGN02_15570 PF02875 Mur ligase family, glutamate ligase domain DGN02_15585 PF01842 ACT domain DGN02_15585 PF00696 Amino acid kinase family DGN02_15595 PF02567 Phenazine biosynthesis-like protein DGN02_15605 PF02566 OsmC-like protein DGN02_15610 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DGN02_15610 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DGN02_15615 PF03652 Holliday junction resolvase DGN02_15620 PF02622 Uncharacterized ACR, COG1678 DGN02_15630 PF00958 GMP synthase C terminal domain DGN02_15630 PF00117 Glutamine amidotransferase class-I DGN02_15630 PF13673 Acetyltransferase (GNAT) domain DGN02_15630 PF13302 Acetyltransferase (GNAT) domain DGN02_15630 PF03352 Methyladenine glycosylase DGN02_15650 PF00437 Type II/IV secretion system protein DGN02_15655 PF00437 Type II/IV secretion system protein DGN02_15660 PF01168 Alanine racemase, N-terminal domain DGN02_15665 PF03807 NADP oxidoreductase coenzyme F420-dependent DGN02_15665 PF14748 Pyrroline-5-carboxylate reductase dimerisation DGN02_15675 PF01551 Peptidase family M23 DGN02_15695 PF01965 DJ-1/PfpI family DGN02_15705 PF02082 Transcriptional regulator DGN02_15710 PF01458 Uncharacterized protein family (UPF0051) DGN02_15715 PF00005 ABC transporter DGN02_15720 PF01458 Uncharacterized protein family (UPF0051) DGN02_15725 PF00266 Aminotransferase class-V DGN02_15735 PF00355 Rieske [2Fe-2S] domain DGN02_15740 PF07715 TonB-dependent Receptor Plug Domain DGN02_15740 PF00593 TonB dependent receptor DGN02_15745 PF13640 2OG-Fe(II) oxygenase superfamily DGN02_15745 PF18331 PKHD-type hydroxylase C-terminal domain DGN02_15770 PF02424 ApbE family DGN02_15775 PF00175 Oxidoreductase NAD-binding domain DGN02_15775 PF00667 FAD binding domain DGN02_15775 PF00258 Flavodoxin DGN02_15800 PF01636 Phosphotransferase enzyme family DGN02_15805 PF00483 Nucleotidyl transferase DGN02_15820 PF00308 Bacterial dnaA protein DGN02_15825 PF01594 AI-2E family transporter DGN02_15835 PF00586 AIR synthase related protein, N-terminal domain DGN02_15835 PF02769 AIR synthase related protein, C-terminal domain DGN02_15845 PF00551 Formyl transferase DGN02_15865 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DGN02_15870 PF01722 BolA-like protein DGN02_15875 PF00571 CBS domain DGN02_15875 PF01380 SIS domain DGN02_15890 PF03968 OstA-like protein DGN02_15895 PF00005 ABC transporter DGN02_15900 PF04963 Sigma-54 factor, core binding domain DGN02_15900 PF04552 Sigma-54, DNA binding domain DGN02_15900 PF00309 Sigma-54 factor, Activator interacting domain (AID) DGN02_15905 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DGN02_15910 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DGN02_15915 PF07475 HPr Serine kinase C-terminal domain DGN02_15915 PF02603 HPr Serine kinase N terminus DGN02_15920 PF03668 P-loop ATPase protein family DGN02_15930 PF00381 PTS HPr component phosphorylation site DGN02_15935 PF00391 PEP-utilising enzyme, mobile domain DGN02_15935 PF05524 PEP-utilising enzyme, N-terminal DGN02_15935 PF02896 PEP-utilising enzyme, TIM barrel domain DGN02_15940 PF00571 CBS domain DGN02_15940 PF03448 MgtE intracellular N domain DGN02_15940 PF01769 Divalent cation transporter DGN02_15945 PF00756 Putative esterase DGN02_15950 PF02322 Cytochrome bd terminal oxidase subunit II DGN02_15955 PF01654 Cytochrome bd terminal oxidase subunit I DGN02_15965 PF00324 Amino acid permease DGN02_15975 PF00544 Pectate lyase DGN02_15985 PF00561 alpha/beta hydrolase fold DGN02_15995 PF00196 Bacterial regulatory proteins, luxR family DGN02_16000 PF00324 Amino acid permease DGN02_16035 PF12706 Beta-lactamase superfamily domain DGN02_16040 PF04820 Tryptophan halogenase DGN02_16100 PF00376 MerR family regulatory protein DGN02_16100 PF09278 MerR, DNA binding DGN02_16105 PF07690 Major Facilitator Superfamily DGN02_16115 PF03738 Glutathionylspermidine synthase preATP-grasp DGN02_16140 PF04012 PspA/IM30 family DGN02_16150 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DGN02_16150 PF01243 Pyridoxamine 5'-phosphate oxidase DGN02_16155 PF01202 Shikimate kinase DGN02_16160 PF01761 3-dehydroquinate synthase DGN02_16170 PF01208 Uroporphyrinogen decarboxylase (URO-D) DGN02_16175 PF07690 Major Facilitator Superfamily DGN02_16180 PF00072 Response regulator receiver domain DGN02_16180 PF01627 Hpt domain DGN02_16180 PF00512 His Kinase A (phospho-acceptor) domain DGN02_16180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_16180 PF00672 HAMP domain DGN02_16180 PF17149 Periplasmic sensor domain found in signal transduction proteins DGN02_16185 PF17149 Periplasmic sensor domain found in signal transduction proteins DGN02_16185 PF00672 HAMP domain DGN02_16185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_16185 PF00512 His Kinase A (phospho-acceptor) domain DGN02_16185 PF01627 Hpt domain DGN02_16185 PF00072 Response regulator receiver domain DGN02_16195 PF01627 Hpt domain DGN02_16195 PF00512 His Kinase A (phospho-acceptor) domain DGN02_16195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_16195 PF00072 Response regulator receiver domain DGN02_16200 PF04264 YceI-like domain DGN02_16220 PF03315 Serine dehydratase beta chain DGN02_16220 PF03313 Serine dehydratase alpha chain DGN02_16225 PF12697 Alpha/beta hydrolase family DGN02_16235 PF03447 Homoserine dehydrogenase, NAD binding domain DGN02_16235 PF00696 Amino acid kinase family DGN02_16235 PF00742 Homoserine dehydrogenase DGN02_16240 PF01053 Cys/Met metabolism PLP-dependent enzyme DGN02_16245 PF00561 alpha/beta hydrolase fold DGN02_16250 PF01551 Peptidase family M23 DGN02_16250 PF08525 Opacity-associated protein A N-terminal motif DGN02_16250 PF01476 LysM domain DGN02_16255 PF00009 Elongation factor Tu GTP binding domain DGN02_16255 PF16658 Class II release factor RF3, C-terminal domain DGN02_16260 PF03006 Haemolysin-III related DGN02_16265 PF05170 AsmA family DGN02_16270 PF00571 CBS domain DGN02_16270 PF00478 IMP dehydrogenase / GMP reductase domain DGN02_16275 PF00535 Glycosyl transferase family 2 DGN02_16280 PF00912 Transglycosylase DGN02_16285 PF01430 Hsp33 protein DGN02_16295 PF00593 TonB dependent receptor DGN02_16295 PF07715 TonB-dependent Receptor Plug Domain DGN02_16300 PF00440 Bacterial regulatory proteins, tetR family DGN02_16305 PF00561 alpha/beta hydrolase fold DGN02_16310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DGN02_16310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DGN02_16310 PF09317 Domain of unknown function (DUF1974) DGN02_16335 PF01597 Glycine cleavage H-protein DGN02_16340 PF01571 Aminomethyltransferase folate-binding domain DGN02_16340 PF08669 Glycine cleavage T-protein C-terminal barrel domain DGN02_16350 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DGN02_16355 PF03819 MazG nucleotide pyrophosphohydrolase domain DGN02_16360 PF00459 Inositol monophosphatase family DGN02_16365 PF00293 NUDIX domain DGN02_16370 PF00202 Aminotransferase class-III DGN02_16375 PF04452 RNA methyltransferase DGN02_16380 PF02685 Glucokinase DGN02_16395 PF00704 Glycosyl hydrolases family 18 DGN02_16395 PF01476 LysM domain DGN02_16410 PF01915 Glycosyl hydrolase family 3 C-terminal domain DGN02_16410 PF00933 Glycosyl hydrolase family 3 N terminal domain DGN02_16410 PF07691 PA14 domain DGN02_16410 PF14310 Fibronectin type III-like domain DGN02_16420 PF01301 Glycosyl hydrolases family 35 DGN02_16425 PF13520 Amino acid permease DGN02_16435 PF02056 Family 4 glycosyl hydrolase DGN02_16435 PF11975 Family 4 glycosyl hydrolase C-terminal domain DGN02_16445 PF17678 Glycosyl hydrolase family 92 N-terminal domain DGN02_16445 PF07971 Glycosyl hydrolase family 92 DGN02_16450 PF01301 Glycosyl hydrolases family 35 DGN02_16485 PF03932 CutC family DGN02_16490 PF01112 Asparaginase DGN02_16500 PF13302 Acetyltransferase (GNAT) domain DGN02_16515 PF00072 Response regulator receiver domain DGN02_16515 PF01584 CheW-like domain DGN02_16515 PF02895 Signal transducing histidine kinase, homodimeric domain DGN02_16515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_16515 PF01627 Hpt domain DGN02_16520 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DGN02_16520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_16525 PF01584 CheW-like domain DGN02_16530 PF00072 Response regulator receiver domain DGN02_16535 PF00072 Response regulator receiver domain DGN02_16540 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DGN02_16540 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DGN02_16550 PF03747 ADP-ribosylglycohydrolase DGN02_16555 PF00814 Glycoprotease family DGN02_16560 PF13307 Helicase C-terminal domain DGN02_16560 PF04851 Type III restriction enzyme, res subunit DGN02_16570 PF00912 Transglycosylase DGN02_16570 PF00905 Penicillin binding protein transpeptidase domain DGN02_16570 PF14814 Bifunctional transglycosylase second domain DGN02_16575 PF00535 Glycosyl transferase family 2 DGN02_16590 PF13291 ACT domain DGN02_16590 PF04607 Region found in RelA / SpoT proteins DGN02_16590 PF02824 TGS domain DGN02_16595 PF08042 PqqA family DGN02_16600 PF12706 Beta-lactamase superfamily domain DGN02_16605 PF03070 TENA/THI-4/PQQC family DGN02_16610 PF05402 Coenzyme PQQ synthesis protein D (PqqD) DGN02_16615 PF13186 Iron-sulfur cluster-binding domain DGN02_16615 PF04055 Radical SAM superfamily DGN02_16630 PF02685 Glucokinase DGN02_16640 PF00270 DEAD/DEAH box helicase DGN02_16640 PF00271 Helicase conserved C-terminal domain DGN02_16640 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DGN02_16640 PF04408 Helicase associated domain (HA2) DGN02_16640 PF11898 Domain of unknown function (DUF3418) DGN02_16645 PF00210 Ferritin-like domain DGN02_16650 PF00270 DEAD/DEAH box helicase DGN02_16650 PF00271 Helicase conserved C-terminal domain DGN02_16650 PF00570 HRDC domain DGN02_16650 PF09382 RQC domain DGN02_16650 PF16124 RecQ zinc-binding DGN02_16690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_16690 PF00672 HAMP domain DGN02_16690 PF02203 Tar ligand binding domain homologue DGN02_16695 PF01810 LysE type translocator DGN02_16700 PF03466 LysR substrate binding domain DGN02_16700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_16710 PF13426 PAS domain DGN02_16710 PF07536 HWE histidine kinase DGN02_16710 PF13581 Histidine kinase-like ATPase domain DGN02_16715 PF06508 Queuosine biosynthesis protein QueC DGN02_16725 PF04055 Radical SAM superfamily DGN02_16735 PF00691 OmpA family DGN02_16740 PF04052 TolB amino-terminal domain DGN02_16740 PF07676 WD40-like Beta Propeller Repeat DGN02_16750 PF02472 Biopolymer transport protein ExbD/TolR DGN02_16755 PF01618 MotA/TolQ/ExbB proton channel family DGN02_16760 PF03061 Thioesterase superfamily DGN02_16765 PF05491 RuvB C-terminal winged helix domain DGN02_16765 PF05496 Holliday junction DNA helicase RuvB P-loop domain DGN02_16765 PF17864 RuvB AAA lid domain DGN02_16770 PF02705 K+ potassium transporter DGN02_16775 PF07499 RuvA, C-terminal domain DGN02_16775 PF01330 RuvA N terminal domain DGN02_16780 PF02075 Crossover junction endodeoxyribonuclease RuvC DGN02_16785 PF01709 Transcriptional regulator DGN02_16800 PF02938 GAD domain DGN02_16800 PF01336 OB-fold nucleic acid binding domain DGN02_16800 PF00152 tRNA synthetases class II (D, K and N) DGN02_16815 PF07690 Major Facilitator Superfamily DGN02_16825 PF05506 Domain of unknown function (DUF756) DGN02_16825 PF04185 Phosphoesterase family DGN02_16845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_16845 PF03466 LysR substrate binding domain DGN02_16855 PF12848 ABC transporter DGN02_16855 PF00005 ABC transporter DGN02_16860 PF07715 TonB-dependent Receptor Plug Domain DGN02_16860 PF00593 TonB dependent receptor DGN02_16875 PF07715 TonB-dependent Receptor Plug Domain DGN02_16875 PF00593 TonB dependent receptor DGN02_16880 PF07715 TonB-dependent Receptor Plug Domain DGN02_16880 PF00593 TonB dependent receptor DGN02_16885 PF00067 Cytochrome P450 DGN02_16895 PF00999 Sodium/hydrogen exchanger family DGN02_16895 PF02254 TrkA-N domain DGN02_16905 PF07660 Secretin and TonB N terminus short domain DGN02_16905 PF00593 TonB dependent receptor DGN02_16905 PF07715 TonB-dependent Receptor Plug Domain DGN02_16915 PF04183 IucA / IucC family DGN02_16915 PF06276 Ferric iron reductase FhuF-like transporter DGN02_16920 PF07690 Major Facilitator Superfamily DGN02_16925 PF06276 Ferric iron reductase FhuF-like transporter DGN02_16925 PF04183 IucA / IucC family DGN02_16930 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DGN02_16930 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DGN02_16950 PF02654 Cobalamin-5-phosphate synthase DGN02_16960 PF02277 Phosphoribosyltransferase DGN02_16965 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DGN02_16970 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DGN02_16970 PF07685 CobB/CobQ-like glutamine amidotransferase domain DGN02_16975 PF00155 Aminotransferase class I and II DGN02_16980 PF17113 Regulatory signalling modulator protein AmpE DGN02_16980 PF03186 CobD/Cbib protein DGN02_16985 PF12557 Cob(I)alamin adenosyltransferase N terminal DGN02_16985 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DGN02_17005 PF00593 TonB dependent receptor DGN02_17005 PF07715 TonB-dependent Receptor Plug Domain DGN02_17010 PF10431 C-terminal, D2-small domain, of ClpB protein DGN02_17010 PF07724 AAA domain (Cdc48 subfamily) DGN02_17010 PF17871 AAA lid domain DGN02_17010 PF02861 Clp amino terminal domain, pathogenicity island component DGN02_17010 PF00004 ATPase family associated with various cellular activities (AAA) DGN02_17015 PF00005 ABC transporter DGN02_17020 PF00528 Binding-protein-dependent transport system inner membrane component DGN02_17025 PF09084 NMT1/THI5 like DGN02_17030 PF00248 Aldo/keto reductase family DGN02_17035 PF00296 Luciferase-like monooxygenase DGN02_17040 PF07715 TonB-dependent Receptor Plug Domain DGN02_17040 PF00593 TonB dependent receptor DGN02_17045 PF01541 GIY-YIG catalytic domain DGN02_17080 PF07715 TonB-dependent Receptor Plug Domain DGN02_17080 PF00593 TonB dependent receptor DGN02_17085 PF02358 Trehalose-phosphatase DGN02_17090 PF00723 Glycosyl hydrolases family 15 DGN02_17095 PF00982 Glycosyltransferase family 20 DGN02_17100 PF01011 PQQ enzyme repeat DGN02_17110 PF02203 Tar ligand binding domain homologue DGN02_17110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_17110 PF00672 HAMP domain DGN02_17115 PF04134 Protein of unknown function, DUF393 DGN02_17125 PF02578 Multi-copper polyphenol oxidoreductase laccase DGN02_17130 PF00849 RNA pseudouridylate synthase DGN02_17135 PF13525 Outer membrane lipoprotein DGN02_17145 PF00795 Carbon-nitrogen hydrolase DGN02_17145 PF02540 NAD synthase DGN02_17160 PF00549 CoA-ligase DGN02_17160 PF02629 CoA binding domain DGN02_17165 PF08442 ATP-grasp domain DGN02_17165 PF00549 CoA-ligase DGN02_17170 PF00512 His Kinase A (phospho-acceptor) domain DGN02_17170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_17175 PF00072 Response regulator receiver domain DGN02_17175 PF00158 Sigma-54 interaction domain DGN02_17175 PF02954 Bacterial regulatory protein, Fis family DGN02_17185 PF00437 Type II/IV secretion system protein DGN02_17185 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DGN02_17205 PF00893 Small Multidrug Resistance protein DGN02_17220 PF00482 Type II secretion system (T2SS), protein F DGN02_17225 PF06750 Bacterial Peptidase A24 N-terminal domain DGN02_17225 PF01478 Type IV leader peptidase family DGN02_17230 PF01121 Dephospho-CoA kinase DGN02_17275 PF11808 Phosphate regulon sensor protein PhoR DGN02_17275 PF00512 His Kinase A (phospho-acceptor) domain DGN02_17275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_17275 PF00989 PAS fold DGN02_17280 PF00486 Transcriptional regulatory protein, C terminal DGN02_17280 PF00072 Response regulator receiver domain DGN02_17290 PF08443 RimK-like ATP-grasp domain DGN02_17290 PF18030 RimK PreATP-grasp domain DGN02_17295 PF00128 Alpha amylase, catalytic domain DGN02_17295 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DGN02_17325 PF06508 Queuosine biosynthesis protein QueC DGN02_17340 PF00872 Transposase, Mutator family DGN02_17370 PF02534 Type IV secretory system Conjugative DNA transfer DGN02_17440 PF00580 UvrD/REP helicase N-terminal domain DGN02_17440 PF13361 UvrD-like helicase C-terminal domain DGN02_17520 PF03797 Autotransporter beta-domain DGN02_17520 PF00657 GDSL-like Lipase/Acylhydrolase DGN02_17530 PF05690 Thiazole biosynthesis protein ThiG DGN02_17535 PF02390 Putative methyltransferase DGN02_17540 PF03600 Citrate transporter DGN02_17540 PF02080 TrkA-C domain DGN02_17560 PF01557 Fumarylacetoacetate (FAA) hydrolase family DGN02_17565 PF01741 Large-conductance mechanosensitive channel, MscL DGN02_17575 PF00356 Bacterial regulatory proteins, lacI family DGN02_17585 PF02837 Glycosyl hydrolases family 2, sugar binding domain DGN02_17585 PF00703 Glycosyl hydrolases family 2 DGN02_17585 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain DGN02_17590 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation DGN02_17590 PF10566 Glycoside hydrolase 97 DGN02_17590 PF14508 Glycosyl-hydrolase 97 N-terminal DGN02_17595 PF00135 Carboxylesterase family DGN02_17600 PF00588 SpoU rRNA Methylase family DGN02_17600 PF08032 RNA 2'-O ribose methyltransferase substrate binding DGN02_17610 PF11838 ERAP1-like C-terminal domain DGN02_17610 PF01433 Peptidase family M1 domain DGN02_17615 PF00873 AcrB/AcrD/AcrF family DGN02_17620 PF00529 HlyD membrane-fusion protein of T1SS DGN02_17620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGN02_17625 PF00009 Elongation factor Tu GTP binding domain DGN02_17630 PF01507 Phosphoadenosine phosphosulfate reductase family DGN02_17635 PF00667 FAD binding domain DGN02_17635 PF00258 Flavodoxin DGN02_17635 PF00175 Oxidoreductase NAD-binding domain DGN02_17640 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DGN02_17640 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DGN02_17645 PF01507 Phosphoadenosine phosphosulfate reductase family DGN02_17665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_17665 PF01627 Hpt domain DGN02_17665 PF00072 Response regulator receiver domain DGN02_17665 PF00512 His Kinase A (phospho-acceptor) domain DGN02_17680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_17680 PF03466 LysR substrate binding domain DGN02_17685 PF10414 Sirohaem synthase dimerisation region DGN02_17685 PF14824 Sirohaem biosynthesis protein central DGN02_17685 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DGN02_17690 PF00291 Pyridoxal-phosphate dependent enzyme DGN02_17700 PF01661 Macro domain DGN02_17705 PF00274 Fructose-bisphosphate aldolase class-I DGN02_17720 PF02887 Pyruvate kinase, alpha/beta domain DGN02_17720 PF00224 Pyruvate kinase, barrel domain DGN02_17725 PF13419 Haloacid dehalogenase-like hydrolase DGN02_17730 PF00162 Phosphoglycerate kinase DGN02_17755 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DGN02_17755 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DGN02_17765 PF03922 OmpW family DGN02_17770 PF03922 OmpW family DGN02_17780 PF00753 Metallo-beta-lactamase superfamily DGN02_17780 PF04273 Putative phosphatase (DUF442) DGN02_17790 PF00528 Binding-protein-dependent transport system inner membrane component DGN02_17795 PF03459 TOBE domain DGN02_17795 PF00005 ABC transporter DGN02_17830 PF01476 LysM domain DGN02_17830 PF03734 L,D-transpeptidase catalytic domain DGN02_17835 PF04225 Opacity-associated protein A LysM-like domain DGN02_17835 PF01551 Peptidase family M23 DGN02_17840 PF07715 TonB-dependent Receptor Plug Domain DGN02_17840 PF00593 TonB dependent receptor DGN02_17850 PF00456 Transketolase, thiamine diphosphate binding domain DGN02_17850 PF02779 Transketolase, pyrimidine binding domain DGN02_17850 PF02780 Transketolase, C-terminal domain DGN02_17855 PF00375 Sodium:dicarboxylate symporter family DGN02_17865 PF00092 von Willebrand factor type A domain DGN02_17865 PF07584 Aerotolerance regulator N-terminal DGN02_17885 PF17863 AAA lid domain DGN02_17885 PF07726 ATPase family associated with various cellular activities (AAA) DGN02_17890 PF11741 AMIN domain DGN02_17890 PF00263 Bacterial type II and III secretion system protein DGN02_17890 PF03958 Bacterial type II/III secretion system short domain DGN02_17890 PF07660 Secretin and TonB N terminus short domain DGN02_17895 PF04351 Pilus assembly protein, PilP DGN02_17900 PF04350 Pilus assembly protein, PilO DGN02_17905 PF05137 Fimbrial assembly protein (PilN) DGN02_17910 PF11104 Type IV pilus assembly protein PilM; DGN02_17915 PF17092 Penicillin-binding protein OB-like domain DGN02_17915 PF00912 Transglycosylase DGN02_17915 PF00905 Penicillin binding protein transpeptidase domain DGN02_17925 PF00285 Citrate synthase, C-terminal domain DGN02_17930 PF01197 Ribosomal protein L31 DGN02_17935 PF01156 Inosine-uridine preferring nucleoside hydrolase DGN02_17940 PF00271 Helicase conserved C-terminal domain DGN02_17940 PF00270 DEAD/DEAH box helicase DGN02_17940 PF17191 RecG wedge domain DGN02_17945 PF01042 Endoribonuclease L-PSP DGN02_17950 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DGN02_17950 PF08666 SAF domain DGN02_17955 PF03573 outer membrane porin, OprD family DGN02_17960 PF13378 Enolase C-terminal domain-like DGN02_17960 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DGN02_17965 PF07690 Major Facilitator Superfamily DGN02_17970 PF00171 Aldehyde dehydrogenase family DGN02_17975 PF00701 Dihydrodipicolinate synthetase family DGN02_17980 PF03466 LysR substrate binding domain DGN02_17980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_17985 PF13291 ACT domain DGN02_17985 PF04607 Region found in RelA / SpoT proteins DGN02_17985 PF02824 TGS domain DGN02_17990 PF01192 RNA polymerase Rpb6 DGN02_17995 PF00625 Guanylate kinase DGN02_18000 PF03755 YicC-like family, N-terminal region DGN02_18000 PF08340 Domain of unknown function (DUF1732) DGN02_18005 PF03725 3' exoribonuclease family, domain 2 DGN02_18005 PF01138 3' exoribonuclease family, domain 1 DGN02_18015 PF01725 Ham1 family DGN02_18020 PF06969 HemN C-terminal domain DGN02_18020 PF04055 Radical SAM superfamily DGN02_18035 PF00557 Metallopeptidase family M24 DGN02_18045 PF05195 Aminopeptidase P, N-terminal domain DGN02_18045 PF00557 Metallopeptidase family M24 DGN02_18050 PF03695 Uncharacterised protein family (UPF0149) DGN02_18060 PF05164 Cell division protein ZapA DGN02_18070 PF01812 5-formyltetrahydrofolate cyclo-ligase family DGN02_18080 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DGN02_18090 PF13369 Transglutaminase-like superfamily DGN02_18095 PF00301 Rubredoxin DGN02_18100 PF02581 Thiamine monophosphate synthase DGN02_18120 PF00202 Aminotransferase class-III DGN02_18125 PF00196 Bacterial regulatory proteins, luxR family DGN02_18125 PF17874 MalT-like TPR region DGN02_18130 PF00127 Copper binding proteins, plastocyanin/azurin family DGN02_18135 PF00155 Aminotransferase class I and II DGN02_18145 PF00034 Cytochrome c DGN02_18145 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DGN02_18150 PF01593 Flavin containing amine oxidoreductase DGN02_18165 PF00202 Aminotransferase class-III DGN02_18170 PF00027 Cyclic nucleotide-binding domain DGN02_18170 PF00520 Ion transport protein DGN02_18185 PF01569 PAP2 superfamily DGN02_18190 PF01062 Bestrophin, RFP-TM, chloride channel DGN02_18200 PF01225 Mur ligase family, catalytic domain DGN02_18200 PF02875 Mur ligase family, glutamate ligase domain DGN02_18200 PF08245 Mur ligase middle domain DGN02_18210 PF00365 Phosphofructokinase DGN02_18220 PF03030 Inorganic H+ pyrophosphatase DGN02_18230 PF00719 Inorganic pyrophosphatase DGN02_18240 PF00593 TonB dependent receptor DGN02_18240 PF07715 TonB-dependent Receptor Plug Domain DGN02_18245 PF12833 Helix-turn-helix domain DGN02_18250 PF18500 CadC C-terminal domain 1 DGN02_18250 PF00486 Transcriptional regulatory protein, C terminal DGN02_18255 PF13667 ThiC-associated domain DGN02_18255 PF01964 Radical SAM ThiC family DGN02_18265 PF07715 TonB-dependent Receptor Plug Domain DGN02_18265 PF00593 TonB dependent receptor DGN02_18270 PF00672 HAMP domain DGN02_18270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_18280 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DGN02_18280 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DGN02_18285 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DGN02_18285 PF00205 Thiamine pyrophosphate enzyme, central domain DGN02_18285 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DGN02_18295 PF00291 Pyridoxal-phosphate dependent enzyme DGN02_18300 PF00682 HMGL-like DGN02_18300 PF08502 LeuA allosteric (dimerisation) domain DGN02_18305 PF00180 Isocitrate/isopropylmalate dehydrogenase DGN02_18310 PF00694 Aconitase C-terminal domain DGN02_18320 PF00330 Aconitase family (aconitate hydratase) DGN02_18325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_18330 PF00990 Diguanylate cyclase, GGDEF domain DGN02_18345 PF02321 Outer membrane efflux protein DGN02_18350 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DGN02_18355 PF03279 Bacterial lipid A biosynthesis acyltransferase DGN02_18380 PF00390 Malic enzyme, N-terminal domain DGN02_18380 PF03949 Malic enzyme, NAD binding domain DGN02_18380 PF01515 Phosphate acetyl/butaryl transferase DGN02_18385 PF00375 Sodium:dicarboxylate symporter family DGN02_18395 PF02743 Cache domain DGN02_18395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_18395 PF00512 His Kinase A (phospho-acceptor) domain DGN02_18400 PF07690 Major Facilitator Superfamily DGN02_18410 PF03466 LysR substrate binding domain DGN02_18410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_18415 PF00248 Aldo/keto reductase family DGN02_18430 PF00196 Bacterial regulatory proteins, luxR family DGN02_18430 PF00072 Response regulator receiver domain DGN02_18440 PF00512 His Kinase A (phospho-acceptor) domain DGN02_18440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_18440 PF08521 Two-component sensor kinase N-terminal DGN02_18445 PF00486 Transcriptional regulatory protein, C terminal DGN02_18445 PF00072 Response regulator receiver domain DGN02_18460 PF03600 Citrate transporter DGN02_18465 PF00106 short chain dehydrogenase DGN02_18470 PF00356 Bacterial regulatory proteins, lacI family DGN02_18485 PF00128 Alpha amylase, catalytic domain DGN02_18505 PF03193 RsgA GTPase DGN02_18510 PF00155 Aminotransferase class I and II DGN02_18525 PF01522 Polysaccharide deacetylase DGN02_18530 PF00462 Glutaredoxin DGN02_18545 PF01979 Amidohydrolase family DGN02_18550 PF01979 Amidohydrolase family DGN02_18570 PF02645 Uncharacterised protein, DegV family COG1307 DGN02_18575 PF01327 Polypeptide deformylase DGN02_18585 PF03960 ArsC family DGN02_18605 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) DGN02_18610 PF01270 Glycosyl hydrolases family 8 DGN02_18615 PF03170 Bacterial cellulose synthase subunit DGN02_18620 PF03552 Cellulose synthase DGN02_18620 PF00535 Glycosyl transferase family 2 DGN02_18620 PF07238 PilZ domain DGN02_18635 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DGN02_18635 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DGN02_18680 PF07715 TonB-dependent Receptor Plug Domain DGN02_18680 PF00593 TonB dependent receptor DGN02_18690 PF00392 Bacterial regulatory proteins, gntR family DGN02_18690 PF07702 UTRA domain DGN02_18700 PF03958 Bacterial type II/III secretion system short domain DGN02_18700 PF00263 Bacterial type II and III secretion system protein DGN02_18710 PF10741 Type II secretion system (T2SS), protein M subtype b DGN02_18715 PF05137 Fimbrial assembly protein (PilN) DGN02_18720 PF03934 Type II secretion system (T2SS), protein K DGN02_18730 PF07963 Prokaryotic N-terminal methylation motif DGN02_18735 PF12019 Type II transport protein GspH DGN02_18740 PF08334 Type II secretion system (T2SS), protein G DGN02_18745 PF00482 Type II secretion system (T2SS), protein F DGN02_18755 PF00437 Type II/IV secretion system protein DGN02_18755 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DGN02_18760 PF00082 Subtilase family DGN02_18760 PF04151 Bacterial pre-peptidase C-terminal domain DGN02_18765 PF03895 YadA-like membrane anchor domain DGN02_18765 PF05658 Head domain of trimeric autotransporter adhesin DGN02_18765 PF05662 Coiled stalk of trimeric autotransporter adhesin DGN02_18765 PF13018 Extended Signal Peptide of Type V secretion system DGN02_18770 PF00082 Subtilase family DGN02_18770 PF04151 Bacterial pre-peptidase C-terminal domain DGN02_18775 PF05658 Head domain of trimeric autotransporter adhesin DGN02_18775 PF05662 Coiled stalk of trimeric autotransporter adhesin DGN02_18775 PF13018 Extended Signal Peptide of Type V secretion system DGN02_18775 PF03895 YadA-like membrane anchor domain DGN02_18780 PF02769 AIR synthase related protein, C-terminal domain DGN02_18780 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DGN02_18780 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DGN02_18795 PF10411 Disulfide bond isomerase protein N-terminus DGN02_18795 PF13098 Thioredoxin-like domain DGN02_18810 PF00589 Phage integrase family DGN02_18810 PF02899 Phage integrase, N-terminal SAM-like domain DGN02_18825 PF03739 Lipopolysaccharide export system permease LptF/LptG DGN02_18835 PF02789 Cytosol aminopeptidase family, N-terminal domain DGN02_18835 PF00883 Cytosol aminopeptidase family, catalytic domain DGN02_18850 PF00133 tRNA synthetases class I (I, L, M and V) DGN02_18850 PF08264 Anticodon-binding domain of tRNA DGN02_18850 PF10458 Valyl tRNA synthetase tRNA binding arm DGN02_18860 PF00593 TonB dependent receptor DGN02_18860 PF07715 TonB-dependent Receptor Plug Domain DGN02_18865 PF01464 Transglycosylase SLT domain DGN02_18865 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain DGN02_18870 PF00544 Pectate lyase DGN02_18885 PF01066 CDP-alcohol phosphatidyltransferase DGN02_18895 PF04073 Aminoacyl-tRNA editing domain DGN02_18895 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DGN02_18895 PF03129 Anticodon binding domain DGN02_18900 PF00816 H-NS histone family DGN02_18910 PF02405 Permease MlaE DGN02_18915 PF00005 ABC transporter DGN02_18920 PF03886 ABC-type transport auxiliary lipoprotein component DGN02_18920 PF02470 MlaD protein DGN02_18940 PF01144 Coenzyme A transferase DGN02_18945 PF01144 Coenzyme A transferase DGN02_18950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DGN02_18950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DGN02_18950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DGN02_18950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DGN02_18955 PF01050 Mannose-6-phosphate isomerase DGN02_18955 PF00483 Nucleotidyl transferase DGN02_18960 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DGN02_18960 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DGN02_18960 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DGN02_18965 PF04321 RmlD substrate binding domain DGN02_18970 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DGN02_18975 PF00483 Nucleotidyl transferase DGN02_18980 PF16363 GDP-mannose 4,6 dehydratase DGN02_18985 PF01012 Electron transfer flavoprotein domain DGN02_18990 PF01012 Electron transfer flavoprotein domain DGN02_18990 PF00766 Electron transfer flavoprotein FAD-binding domain DGN02_19000 PF13649 Methyltransferase domain DGN02_19005 PF00535 Glycosyl transferase family 2 DGN02_19025 PF00535 Glycosyl transferase family 2 DGN02_19035 PF16363 GDP-mannose 4,6 dehydratase DGN02_19040 PF16363 GDP-mannose 4,6 dehydratase DGN02_19055 PF00005 ABC transporter DGN02_19065 PF01053 Cys/Met metabolism PLP-dependent enzyme DGN02_19070 PF00571 CBS domain DGN02_19070 PF00291 Pyridoxal-phosphate dependent enzyme DGN02_19090 PF00437 Type II/IV secretion system protein DGN02_19095 PF14497 Glutathione S-transferase, C-terminal domain DGN02_19095 PF02798 Glutathione S-transferase, N-terminal domain DGN02_19110 PF00270 DEAD/DEAH box helicase DGN02_19110 PF00271 Helicase conserved C-terminal domain DGN02_19120 PF00593 TonB dependent receptor DGN02_19120 PF07715 TonB-dependent Receptor Plug Domain DGN02_19130 PF01242 6-pyruvoyl tetrahydropterin synthase DGN02_19140 PF14863 Alkyl sulfatase dimerisation DGN02_19140 PF00753 Metallo-beta-lactamase superfamily DGN02_19140 PF14864 Alkyl sulfatase C-terminal DGN02_19155 PF13185 GAF domain DGN02_19165 PF00756 Putative esterase DGN02_19170 PF00593 TonB dependent receptor DGN02_19170 PF07715 TonB-dependent Receptor Plug Domain DGN02_19175 PF13419 Haloacid dehalogenase-like hydrolase DGN02_19180 PF11799 impB/mucB/samB family C-terminal domain DGN02_19180 PF00817 impB/mucB/samB family DGN02_19185 PF07977 FabA-like domain DGN02_19190 PF00109 Beta-ketoacyl synthase, N-terminal domain DGN02_19190 PF02801 Beta-ketoacyl synthase, C-terminal domain DGN02_19200 PF01432 Peptidase family M3 DGN02_19215 PF07732 Multicopper oxidase DGN02_19215 PF00394 Multicopper oxidase DGN02_19215 PF07731 Multicopper oxidase DGN02_19220 PF05275 Copper resistance protein B precursor (CopB) DGN02_19225 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DGN02_19250 PF01380 SIS domain DGN02_19255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGN02_19260 PF00005 ABC transporter DGN02_19265 PF02687 FtsX-like permease family DGN02_19265 PF12704 MacB-like periplasmic core domain DGN02_19270 PF00005 ABC transporter DGN02_19270 PF12704 MacB-like periplasmic core domain DGN02_19270 PF02687 FtsX-like permease family DGN02_19280 PF02954 Bacterial regulatory protein, Fis family DGN02_19280 PF00072 Response regulator receiver domain DGN02_19280 PF00158 Sigma-54 interaction domain DGN02_19285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_19285 PF00512 His Kinase A (phospho-acceptor) domain DGN02_19290 PF00132 Bacterial transferase hexapeptide (six repeats) DGN02_19290 PF14602 Hexapeptide repeat of succinyl-transferase DGN02_19290 PF12804 MobA-like NTP transferase domain DGN02_19305 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DGN02_19305 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DGN02_19310 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DGN02_19310 PF02874 ATP synthase alpha/beta family, beta-barrel domain DGN02_19315 PF00231 ATP synthase DGN02_19320 PF02874 ATP synthase alpha/beta family, beta-barrel domain DGN02_19320 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DGN02_19320 PF00306 ATP synthase alpha/beta chain, C terminal domain DGN02_19325 PF00213 ATP synthase delta (OSCP) subunit DGN02_19330 PF00430 ATP synthase B/B' CF(0) DGN02_19335 PF00137 ATP synthase subunit C DGN02_19340 PF00119 ATP synthase A chain DGN02_19360 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGN02_19360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DGN02_19370 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DGN02_19370 PF00364 Biotin-requiring enzyme DGN02_19370 PF02817 e3 binding domain DGN02_19400 PF03180 NLPA lipoprotein DGN02_19405 PF00528 Binding-protein-dependent transport system inner membrane component DGN02_19410 PF00005 ABC transporter DGN02_19410 PF09383 NIL domain DGN02_19415 PF00892 EamA-like transporter family DGN02_19420 PF04461 Protein of unknown function (DUF520) DGN02_19430 PF00989 PAS fold DGN02_19430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_19430 PF00512 His Kinase A (phospho-acceptor) domain DGN02_19430 PF01627 Hpt domain DGN02_19430 PF00072 Response regulator receiver domain DGN02_19430 PF18415 Histidine kinase receptor ArcB trans-membrane domain DGN02_19450 PF13419 Haloacid dehalogenase-like hydrolase DGN02_19455 PF01479 S4 domain DGN02_19455 PF00849 RNA pseudouridylate synthase DGN02_19460 PF05175 Methyltransferase small domain DGN02_19460 PF08468 Methyltransferase small domain N-terminal DGN02_19470 PF07995 Glucose / Sorbosone dehydrogenase DGN02_19480 PF00989 PAS fold DGN02_19480 PF00512 His Kinase A (phospho-acceptor) domain DGN02_19480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_19500 PF00842 Alanine racemase, C-terminal domain DGN02_19500 PF01168 Alanine racemase, N-terminal domain DGN02_19505 PF01266 FAD dependent oxidoreductase DGN02_19510 PF01037 Lrp/AsnC ligand binding domain DGN02_19520 PF01641 SelR domain DGN02_19530 PF01618 MotA/TolQ/ExbB proton channel family DGN02_19535 PF13677 Membrane MotB of proton-channel complex MotA/MotB DGN02_19535 PF00691 OmpA family DGN02_19565 PF01061 ABC-2 type transporter DGN02_19570 PF00005 ABC transporter DGN02_19575 PF00999 Sodium/hydrogen exchanger family DGN02_19585 PF02469 Fasciclin domain DGN02_19590 PF03167 Uracil DNA glycosylase superfamily DGN02_19600 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DGN02_19610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_19610 PF03466 LysR substrate binding domain DGN02_19615 PF03358 NADPH-dependent FMN reductase DGN02_19620 PF00248 Aldo/keto reductase family DGN02_19635 PF05649 Peptidase family M13 DGN02_19635 PF01431 Peptidase family M13 DGN02_19650 PF13520 Amino acid permease DGN02_19660 PF04397 LytTr DNA-binding domain DGN02_19660 PF00072 Response regulator receiver domain DGN02_19665 PF02743 Cache domain DGN02_19665 PF00672 HAMP domain DGN02_19665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_19665 PF06580 Histidine kinase DGN02_19690 PF05974 Domain of unknown function (DUF892) DGN02_19695 PF05067 Manganese containing catalase DGN02_19715 PF01739 CheR methyltransferase, SAM binding domain DGN02_19715 PF03705 CheR methyltransferase, all-alpha domain DGN02_19715 PF08448 PAS fold DGN02_19715 PF01339 CheB methylesterase DGN02_19730 PF02954 Bacterial regulatory protein, Fis family DGN02_19730 PF00072 Response regulator receiver domain DGN02_19730 PF00158 Sigma-54 interaction domain DGN02_19745 PF01654 Cytochrome bd terminal oxidase subunit I DGN02_19750 PF02322 Cytochrome bd terminal oxidase subunit II DGN02_19770 PF16363 GDP-mannose 4,6 dehydratase DGN02_19780 PF03275 UDP-galactopyranose mutase DGN02_19790 PF00005 ABC transporter DGN02_19790 PF00664 ABC transporter transmembrane region DGN02_19805 PF08240 Alcohol dehydrogenase GroES-like domain DGN02_19805 PF13823 Alcohol dehydrogenase GroES-associated DGN02_19805 PF00107 Zinc-binding dehydrogenase DGN02_19850 PF07715 TonB-dependent Receptor Plug Domain DGN02_19850 PF00593 TonB dependent receptor DGN02_19865 PF00005 ABC transporter DGN02_19875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_19875 PF03466 LysR substrate binding domain DGN02_19880 PF01042 Endoribonuclease L-PSP DGN02_19895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DGN02_19895 PF00672 HAMP domain DGN02_19910 PF03466 LysR substrate binding domain DGN02_19910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_19915 PF02525 Flavodoxin-like fold DGN02_19945 PF00916 Sulfate permease family DGN02_19945 PF01740 STAS domain DGN02_19955 PF00557 Metallopeptidase family M24 DGN02_19985 PF01850 PIN domain DGN02_19995 PF13091 PLD-like domain DGN02_19995 PF13087 AAA domain DGN02_20000 PF00872 Transposase, Mutator family DGN02_20005 PF13087 AAA domain DGN02_20005 PF13091 PLD-like domain DGN02_20010 PF00145 C-5 cytosine-specific DNA methylase DGN02_20030 PF04610 TrbL/VirB6 plasmid conjugal transfer protein DGN02_20045 PF07996 Type IV secretion system proteins DGN02_20060 PF00589 Phage integrase family DGN02_20075 PF03979 Sigma-70 factor, region 1.1 DGN02_20075 PF04542 Sigma-70 region 2 DGN02_20075 PF04545 Sigma-70, region 4 DGN02_20075 PF00140 Sigma-70 factor, region 1.2 DGN02_20075 PF04546 Sigma-70, non-essential region DGN02_20075 PF04539 Sigma-70 region 3 DGN02_20080 PF02580 D-Tyr-tRNA(Tyr) deacylase DGN02_20085 PF03279 Bacterial lipid A biosynthesis acyltransferase DGN02_20105 PF00925 GTP cyclohydrolase II DGN02_20125 PF00535 Glycosyl transferase family 2 DGN02_20140 PF01189 16S rRNA methyltransferase RsmB/F DGN02_20140 PF01029 NusB family DGN02_20145 PF02911 Formyl transferase, C-terminal domain DGN02_20145 PF00551 Formyl transferase DGN02_20150 PF01327 Polypeptide deformylase DGN02_20155 PF01476 LysM domain DGN02_20160 PF17782 DprA winged helix domain DGN02_20160 PF02481 DNA recombination-mediator protein A DGN02_20165 PF04361 Protein of unknown function (DUF494) DGN02_20170 PF00114 Pilin (bacterial filament) DGN02_20170 PF07963 Prokaryotic N-terminal methylation motif DGN02_20180 PF01751 Toprim domain DGN02_20180 PF13368 Topoisomerase C-terminal repeat DGN02_20180 PF01131 DNA topoisomerase DGN02_20185 PF01300 Telomere recombination DGN02_20215 PF01343 Peptidase family S49 DGN02_20220 PF01554 MatE DGN02_20240 PF18074 Primosomal protein N C-terminal domain DGN02_20240 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DGN02_20240 PF00271 Helicase conserved C-terminal domain DGN02_20240 PF00270 DEAD/DEAH box helicase DGN02_20240 PF17764 3′ DNA-binding domain (3′BD) DGN02_20245 PF00043 Glutathione S-transferase, C-terminal domain DGN02_20245 PF13417 Glutathione S-transferase, N-terminal domain DGN02_20260 PF07992 Pyridine nucleotide-disulphide oxidoreductase DGN02_20265 PF03458 UPF0126 domain DGN02_20270 PF04542 Sigma-70 region 2 DGN02_20270 PF04545 Sigma-70, region 4 DGN02_20275 PF03167 Uracil DNA glycosylase superfamily DGN02_20280 PF00072 Response regulator receiver domain DGN02_20285 PF18075 FtsX extracellular domain DGN02_20290 PF00005 ABC transporter DGN02_20295 PF00270 DEAD/DEAH box helicase DGN02_20295 PF12300 ATP-dependent RNA helicase RhlB DGN02_20295 PF00271 Helicase conserved C-terminal domain DGN02_20300 PF00085 Thioredoxin DGN02_20305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DGN02_20305 PF07498 Rho termination factor, N-terminal domain DGN02_20305 PF07497 Rho termination factor, RNA-binding domain DGN02_20310 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) DGN02_20315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_20315 PF03466 LysR substrate binding domain DGN02_20325 PF03971 Monomeric isocitrate dehydrogenase DGN02_20335 PF04972 BON domain DGN02_20335 PF01476 LysM domain DGN02_20340 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DGN02_20340 PF14489 QueF-like protein DGN02_20345 PF07687 Peptidase dimerisation domain DGN02_20345 PF01546 Peptidase family M20/M25/M40 DGN02_20350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGN02_20355 PF00873 AcrB/AcrD/AcrF family DGN02_20360 PF00873 AcrB/AcrD/AcrF family DGN02_20375 PF07063 Domain of unknown function (DUF1338) DGN02_20430 PF13378 Enolase C-terminal domain-like DGN02_20430 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DGN02_20440 PF13520 Amino acid permease DGN02_20455 PF05360 yiaA/B two helix domain DGN02_20460 PF07995 Glucose / Sorbosone dehydrogenase DGN02_20465 PF14310 Fibronectin type III-like domain DGN02_20465 PF00933 Glycosyl hydrolase family 3 N terminal domain DGN02_20465 PF01915 Glycosyl hydrolase family 3 C-terminal domain DGN02_20470 PF02152 Dihydroneopterin aldolase DGN02_20475 PF00814 Glycoprotease family DGN02_20480 PF01165 Ribosomal protein S21 DGN02_20485 PF09424 Yqey-like protein DGN02_20495 PF03631 Virulence factor BrkB DGN02_20500 PF01807 CHC2 zinc finger DGN02_20500 PF10410 DnaB-helicase binding domain of primase DGN02_20500 PF08278 DNA primase DnaG DnaB-binding DGN02_20500 PF08275 DNA primase catalytic core, N-terminal domain DGN02_20505 PF13593 SBF-like CPA transporter family (DUF4137) DGN02_20515 PF01040 UbiA prenyltransferase family DGN02_20540 PF00510 Cytochrome c oxidase subunit III DGN02_20545 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 DGN02_20555 PF00115 Cytochrome C and Quinol oxidase polypeptide I DGN02_20560 PF02790 Cytochrome C oxidase subunit II, transmembrane domain DGN02_20560 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DGN02_20570 PF00171 Aldehyde dehydrogenase family DGN02_20570 PF01619 Proline dehydrogenase DGN02_20570 PF14850 DNA-binding domain of Proline dehydrogenase DGN02_20570 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DGN02_20605 PF00579 tRNA synthetases class I (W and Y) DGN02_20610 PF01551 Peptidase family M23 DGN02_20610 PF04225 Opacity-associated protein A LysM-like domain DGN02_20615 PF03702 Anhydro-N-acetylmuramic acid kinase DGN02_20625 PF07690 Major Facilitator Superfamily DGN02_20630 PF03372 Endonuclease/Exonuclease/phosphatase family DGN02_20635 PF00156 Phosphoribosyl transferase domain DGN02_20645 PF13614 AAA domain DGN02_20650 PF17762 HTH domain found in ParB protein DGN02_20650 PF02195 ParB-like nuclease domain DGN02_20665 PF01370 NAD dependent epimerase/dehydratase family DGN02_20670 PF00535 Glycosyl transferase family 2 DGN02_20685 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DGN02_20685 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DGN02_20685 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DGN02_20685 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DGN02_20690 PF00692 dUTPase DGN02_20695 PF02441 Flavoprotein DGN02_20695 PF04127 DNA / pantothenate metabolism flavoprotein DGN02_20700 PF04002 RadC-like JAB domain DGN02_20705 PF03485 Arginyl tRNA synthetase N terminal domain DGN02_20705 PF00750 tRNA synthetases class I (R) DGN02_20705 PF05746 DALR anticodon binding domain DGN02_20720 PF00106 short chain dehydrogenase DGN02_20725 PF01757 Acyltransferase family DGN02_20730 PF03033 Glycosyltransferase family 28 N-terminal domain DGN02_20745 PF17810 Arginine decarboxylase helical bundle domain DGN02_20745 PF17944 Arginine decarboxylase C-terminal helical extension DGN02_20745 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DGN02_20750 PF17284 Spermidine synthase tetramerisation domain DGN02_20775 PF00963 Cohesin domain DGN02_20775 PF00754 F5/8 type C domain DGN02_20775 PF00041 Fibronectin type III domain DGN02_20775 PF02838 Glycosyl hydrolase family 20, domain 2 DGN02_20775 PF07555 beta-N-acetylglucosaminidase DGN02_20785 PF00543 Nitrogen regulatory protein P-II DGN02_20790 PF04380 Membrane fusogenic activity DGN02_20795 PF13335 Magnesium chelatase, subunit ChlI C-terminal DGN02_20795 PF01078 Magnesium chelatase, subunit ChlI DGN02_20810 PF12792 CSS motif domain associated with EAL DGN02_20810 PF00563 EAL domain DGN02_20815 PF00487 Fatty acid desaturase DGN02_20820 PF00970 Oxidoreductase FAD-binding domain DGN02_20820 PF00111 2Fe-2S iron-sulfur cluster binding domain DGN02_20820 PF00175 Oxidoreductase NAD-binding domain DGN02_20825 PF00440 Bacterial regulatory proteins, tetR family DGN02_20845 PF01139 tRNA-splicing ligase RtcB DGN02_20880 PF08338 Domain of unknown function (DUF1731) DGN02_20880 PF01370 NAD dependent epimerase/dehydratase family DGN02_20885 PF00072 Response regulator receiver domain DGN02_20885 PF00486 Transcriptional regulatory protein, C terminal DGN02_20890 PF00512 His Kinase A (phospho-acceptor) domain DGN02_20890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_20890 PF08521 Two-component sensor kinase N-terminal DGN02_20915 PF00595 PDZ domain DGN02_20935 PF01594 AI-2E family transporter DGN02_20940 PF13419 Haloacid dehalogenase-like hydrolase DGN02_20945 PF00883 Cytosol aminopeptidase family, catalytic domain DGN02_20945 PF02789 Cytosol aminopeptidase family, N-terminal domain DGN02_20975 PF00196 Bacterial regulatory proteins, luxR family DGN02_20975 PF00072 Response regulator receiver domain DGN02_20980 PF07730 Histidine kinase DGN02_20985 PF13533 Biotin-lipoyl like DGN02_20990 PF00005 ABC transporter DGN02_21010 PF00892 EamA-like transporter family DGN02_21015 PF00892 EamA-like transporter family DGN02_21035 PF00753 Metallo-beta-lactamase superfamily DGN02_21040 PF00579 tRNA synthetases class I (W and Y) DGN02_21045 PF05532 CsbD-like DGN02_21060 PF00491 Arginase family DGN02_21085 PF02223 Thymidylate kinase DGN02_21105 PF03309 Type III pantothenate kinase DGN02_21110 PF02237 Biotin protein ligase C terminal domain DGN02_21110 PF03099 Biotin/lipoate A/B protein ligase family DGN02_21110 PF08279 HTH domain DGN02_21125 PF06167 Glucose-regulated metallo-peptidase M90 DGN02_21140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_21145 PF00072 Response regulator receiver domain DGN02_21145 PF00486 Transcriptional regulatory protein, C terminal DGN02_21155 PF01207 Dihydrouridine synthase (Dus) DGN02_21175 PF00199 Catalase DGN02_21175 PF06628 Catalase-related immune-responsive DGN02_21185 PF13307 Helicase C-terminal domain DGN02_21185 PF06733 DEAD_2 DGN02_21200 PF01488 Shikimate / quinate 5-dehydrogenase DGN02_21200 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DGN02_21200 PF08501 Shikimate dehydrogenase substrate binding domain DGN02_21215 PF00667 FAD binding domain DGN02_21215 PF00258 Flavodoxin DGN02_21215 PF00175 Oxidoreductase NAD-binding domain DGN02_21225 PF03466 LysR substrate binding domain DGN02_21225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_21240 PF00490 Delta-aminolevulinic acid dehydratase DGN02_21275 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region DGN02_21275 PF00326 Prolyl oligopeptidase family DGN02_21280 PF00043 Glutathione S-transferase, C-terminal domain DGN02_21280 PF02798 Glutathione S-transferase, N-terminal domain DGN02_21300 PF04820 Tryptophan halogenase DGN02_21315 PF00005 ABC transporter DGN02_21325 PF01381 Helix-turn-helix DGN02_21335 PF01229 Glycosyl hydrolases family 39 DGN02_21340 PF02583 Metal-sensitive transcriptional repressor DGN02_21345 PF01545 Cation efflux family DGN02_21355 PF07715 TonB-dependent Receptor Plug Domain DGN02_21355 PF00593 TonB dependent receptor DGN02_21365 PF01965 DJ-1/PfpI family DGN02_21365 PF12833 Helix-turn-helix domain DGN02_21370 PF01383 CpcD/allophycocyanin linker domain DGN02_21370 PF00175 Oxidoreductase NAD-binding domain DGN02_21375 PF00005 ABC transporter DGN02_21380 PF01061 ABC-2 type transporter DGN02_21385 PF08546 Ketopantoate reductase PanE/ApbA C terminal DGN02_21385 PF02558 Ketopantoate reductase PanE/ApbA DGN02_21415 PF00268 Ribonucleotide reductase, small chain DGN02_21425 PF03477 ATP cone domain DGN02_21425 PF02867 Ribonucleotide reductase, barrel domain DGN02_21425 PF00317 Ribonucleotide reductase, all-alpha domain DGN02_21440 PF00583 Acetyltransferase (GNAT) family DGN02_21440 PF13380 CoA binding domain DGN02_21440 PF13607 Succinyl-CoA ligase like flavodoxin domain DGN02_21445 PF01769 Divalent cation transporter DGN02_21445 PF00571 CBS domain DGN02_21445 PF03448 MgtE intracellular N domain DGN02_21460 PF00194 Eukaryotic-type carbonic anhydrase DGN02_21465 PF02254 TrkA-N domain DGN02_21465 PF00999 Sodium/hydrogen exchanger family DGN02_21470 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DGN02_21470 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DGN02_21475 PF00723 Glycosyl hydrolases family 15 DGN02_21490 PF05166 YcgL domain DGN02_21495 PF00109 Beta-ketoacyl synthase, N-terminal domain DGN02_21495 PF02801 Beta-ketoacyl synthase, C-terminal domain DGN02_21505 PF00535 Glycosyl transferase family 2 DGN02_21565 PF07977 FabA-like domain DGN02_21570 PF01553 Acyltransferase DGN02_21580 PF00550 Phosphopantetheine attachment site DGN02_21585 PF04820 Tryptophan halogenase DGN02_21610 PF07676 WD40-like Beta Propeller Repeat DGN02_21610 PF00326 Prolyl oligopeptidase family DGN02_21630 PF01218 Coproporphyrinogen III oxidase DGN02_21640 PF01367 5'-3' exonuclease, C-terminal SAM fold DGN02_21640 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DGN02_21640 PF00476 DNA polymerase family A DGN02_21640 PF01612 3'-5' exonuclease DGN02_21650 PF06812 ImpA, N-terminal, type VI secretion system DGN02_21670 PF00069 Protein kinase domain DGN02_21685 PF06744 Type VI secretion protein IcmF C-terminal DGN02_21685 PF14331 ImcF-related N-terminal domain DGN02_21685 PF06761 Intracellular multiplication and human macrophage-killing DGN02_21695 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DGN02_21710 PF04717 Type VI secretion system, phage-baseplate injector DGN02_21725 PF03793 PASTA domain DGN02_21725 PF00069 Protein kinase domain DGN02_21735 PF04542 Sigma-70 region 2 DGN02_21735 PF08281 Sigma-70, region 4 DGN02_21755 PF00328 Histidine phosphatase superfamily (branch 2) DGN02_21805 PF10431 C-terminal, D2-small domain, of ClpB protein DGN02_21805 PF17871 AAA lid domain DGN02_21805 PF07724 AAA domain (Cdc48 subfamily) DGN02_21805 PF00004 ATPase family associated with various cellular activities (AAA) DGN02_21815 PF05947 Type VI secretion system, TssF DGN02_21820 PF04965 Gene 25-like lysozyme DGN02_21825 PF07024 ImpE protein DGN02_21830 PF05638 Type VI secretion system effector, Hcp DGN02_21835 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath DGN02_21840 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 DGN02_21855 PF12464 Maltose acetyltransferase DGN02_21855 PF14602 Hexapeptide repeat of succinyl-transferase DGN02_21865 PF00580 UvrD/REP helicase N-terminal domain DGN02_21865 PF13361 UvrD-like helicase C-terminal domain DGN02_21875 PF13396 Phospholipase_D-nuclease N-terminal DGN02_21875 PF13091 PLD-like domain DGN02_21880 PF03466 LysR substrate binding domain DGN02_21880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_21885 PF03737 Aldolase/RraA DGN02_21890 PF04303 PrpF protein DGN02_21900 PF04909 Amidohydrolase DGN02_21905 PF00471 Ribosomal protein L33 DGN02_21910 PF00830 Ribosomal L28 family DGN02_21915 PF00873 AcrB/AcrD/AcrF family DGN02_21930 PF13533 Biotin-lipoyl like DGN02_21950 PF02527 rRNA small subunit methyltransferase G DGN02_21955 PF16655 PhoD-like phosphatase, N-terminal domain DGN02_21955 PF09423 PhoD-like phosphatase DGN02_21960 PF16655 PhoD-like phosphatase, N-terminal domain DGN02_21960 PF09423 PhoD-like phosphatase DGN02_21965 PF01648 4'-phosphopantetheinyl transferase superfamily DGN02_21970 PF04226 Transglycosylase associated protein DGN02_21980 PF03372 Endonuclease/Exonuclease/phosphatase family DGN02_21985 PF00480 ROK family DGN02_21995 PF09312 SurA N-terminal domain DGN02_21995 PF00639 PPIC-type PPIASE domain DGN02_22010 PF00474 Sodium:solute symporter family DGN02_22015 PF04341 Protein of unknown function, DUF485 DGN02_22025 PF16177 Acetyl-coenzyme A synthetase N-terminus DGN02_22025 PF00501 AMP-binding enzyme DGN02_22025 PF13193 AMP-binding enzyme C-terminal domain DGN02_22030 PF00196 Bacterial regulatory proteins, luxR family DGN02_22030 PF00072 Response regulator receiver domain DGN02_22055 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DGN02_22055 PF04616 Glycosyl hydrolases family 43 DGN02_22065 PF00248 Aldo/keto reductase family DGN02_22080 PF01557 Fumarylacetoacetate (FAA) hydrolase family DGN02_22085 PF13378 Enolase C-terminal domain-like DGN02_22085 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DGN02_22090 PF05336 L-rhamnose mutarotase DGN02_22095 PF07690 Major Facilitator Superfamily DGN02_22100 PF09339 IclR helix-turn-helix domain DGN02_22100 PF01614 Bacterial transcriptional regulator DGN02_22105 PF02659 Putative manganese efflux pump DGN02_22110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_22110 PF00512 His Kinase A (phospho-acceptor) domain DGN02_22125 PF06165 Glycosyltransferase family 36 DGN02_22125 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain DGN02_22145 PF01011 PQQ enzyme repeat DGN02_22145 PF13360 PQQ-like domain DGN02_22145 PF13570 PQQ-like domain DGN02_22170 PF04357 TamB, inner membrane protein subunit of TAM complex DGN02_22175 PF01103 Surface antigen DGN02_22175 PF17243 POTRA domain TamA domain 1 DGN02_22195 PF03412 Peptidase C39 family DGN02_22195 PF00664 ABC transporter transmembrane region DGN02_22195 PF00005 ABC transporter DGN02_22200 PF05746 DALR anticodon binding domain DGN02_22200 PF02092 Glycyl-tRNA synthetase beta subunit DGN02_22205 PF02091 Glycyl-tRNA synthetase alpha subunit DGN02_22210 PF00437 Type II/IV secretion system protein DGN02_22210 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DGN02_22225 PF00117 Glutamine amidotransferase class-I DGN02_22225 PF00958 GMP synthase C terminal domain DGN02_22235 PF00902 Sec-independent protein translocase protein (TatC) DGN02_22240 PF02416 mttA/Hcf106 family DGN02_22245 PF02416 mttA/Hcf106 family DGN02_22255 PF00762 Ferrochelatase DGN02_22260 PF12697 Alpha/beta hydrolase family DGN02_22275 PF04381 Putative exonuclease, RdgC DGN02_22280 PF01171 PP-loop family DGN02_22290 PF00356 Bacterial regulatory proteins, lacI family DGN02_22295 PF07477 Glycosyl hydrolase family 67 C-terminus DGN02_22295 PF07488 Glycosyl hydrolase family 67 middle domain DGN02_22295 PF03648 Glycosyl hydrolase family 67 N-terminus DGN02_22305 PF13378 Enolase C-terminal domain-like DGN02_22305 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DGN02_22310 PF04616 Glycosyl hydrolases family 43 DGN02_22310 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DGN02_22315 PF07691 PA14 domain DGN02_22315 PF01915 Glycosyl hydrolase family 3 C-terminal domain DGN02_22315 PF00933 Glycosyl hydrolase family 3 N terminal domain DGN02_22315 PF14310 Fibronectin type III-like domain DGN02_22320 PF08125 Mannitol dehydrogenase C-terminal domain DGN02_22320 PF01232 Mannitol dehydrogenase Rossmann domain DGN02_22355 PF00171 Aldehyde dehydrogenase family DGN02_22370 PF00202 Aminotransferase class-III DGN02_22380 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DGN02_22380 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DGN02_22400 PF08450 SMP-30/Gluconolactonase/LRE-like region DGN02_22405 PF00331 Glycosyl hydrolase family 10 DGN02_22410 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 DGN02_22410 PF16355 Domain of unknown function (DUF4982) DGN02_22410 PF00703 Glycosyl hydrolases family 2 DGN02_22410 PF02837 Glycosyl hydrolases family 2, sugar binding domain DGN02_22410 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DGN02_22415 PF02614 Glucuronate isomerase DGN02_22420 PF00331 Glycosyl hydrolase family 10 DGN02_22420 PF03422 Carbohydrate binding module (family 6) DGN02_22420 PF00553 Cellulose binding domain DGN02_22430 PF03422 Carbohydrate binding module (family 6) DGN02_22430 PF00331 Glycosyl hydrolase family 10 DGN02_22430 PF00553 Cellulose binding domain DGN02_22450 PF04616 Glycosyl hydrolases family 43 DGN02_22480 PF00550 Phosphopantetheine attachment site DGN02_22480 PF16197 Ketoacyl-synthetase C-terminal extension DGN02_22480 PF14765 Polyketide synthase dehydratase DGN02_22480 PF08659 KR domain DGN02_22480 PF00107 Zinc-binding dehydrogenase DGN02_22480 PF02801 Beta-ketoacyl synthase, C-terminal domain DGN02_22480 PF08240 Alcohol dehydrogenase GroES-like domain DGN02_22480 PF00698 Acyl transferase domain DGN02_22480 PF00109 Beta-ketoacyl synthase, N-terminal domain DGN02_22485 PF01553 Acyltransferase DGN02_22500 PF00356 Bacterial regulatory proteins, lacI family DGN02_22515 PF04820 Tryptophan halogenase DGN02_22520 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DGN02_22525 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) DGN02_22535 PF04337 Protein of unknown function, DUF480 DGN02_22545 PF13302 Acetyltransferase (GNAT) domain DGN02_22550 PF00580 UvrD/REP helicase N-terminal domain DGN02_22550 PF13361 UvrD-like helicase C-terminal domain DGN02_22555 PF00265 Thymidine kinase DGN02_22560 PF00360 Phytochrome region DGN02_22560 PF08446 PAS fold DGN02_22560 PF00512 His Kinase A (phospho-acceptor) domain DGN02_22560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DGN02_22560 PF01590 GAF domain DGN02_22565 PF04349 Periplasmic glucan biosynthesis protein, MdoG DGN02_22575 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DGN02_22575 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DGN02_22575 PF06827 Zinc finger found in FPG and IleRS DGN02_22605 PF03594 Benzoate membrane transport protein DGN02_22610 PF00360 Phytochrome region DGN02_22610 PF13426 PAS domain DGN02_22610 PF08446 PAS fold DGN02_22610 PF01590 GAF domain DGN02_22615 PF01126 Heme oxygenase DGN02_22620 PF07690 Major Facilitator Superfamily DGN02_22630 PF01263 Aldose 1-epimerase DGN02_22640 PF02810 SEC-C motif DGN02_22645 PF01925 Sulfite exporter TauE/SafE DGN02_22675 PF01227 GTP cyclohydrolase I DGN02_22685 PF07869 Protein of unknown function (DUF1656) DGN02_22690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DGN02_22690 PF00529 HlyD membrane-fusion protein of T1SS DGN02_22695 PF02321 Outer membrane efflux protein DGN02_22700 PF04632 Fusaric acid resistance protein family DGN02_22705 PF00083 Sugar (and other) transporter DGN02_22715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DGN02_22715 PF03466 LysR substrate binding domain DGN02_22725 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family DGN02_22730 PF13091 PLD-like domain DGN02_22730 PF13396 Phospholipase_D-nuclease N-terminal DGN02_22805 PF00849 RNA pseudouridylate synthase DGN02_22890 PF13538 UvrD-like helicase C-terminal domain DGN02_22895 PF12705 PD-(D/E)XK nuclease superfamily DGN02_22895 PF00580 UvrD/REP helicase N-terminal domain DGN02_22895 PF13361 UvrD-like helicase C-terminal domain DGN02_22900 PF17946 RecC C-terminal domain DGN02_22940 PF00005 ABC transporter DGN02_22945 PF02405 Permease MlaE DGN02_22950 PF02470 MlaD protein DGN02_22955 PF05494 MlaC protein DGN02_22965 PF04333 MlaA lipoprotein DGN02_22975 PF00255 Glutathione peroxidase DGN02_22985 PF02646 RmuC family DGN02_23000 PF00043 Glutathione S-transferase, C-terminal domain DGN02_23000 PF13417 Glutathione S-transferase, N-terminal domain DGN02_23010 PF13520 Amino acid permease DGN02_23015 PF07971 Glycosyl hydrolase family 92 DGN02_23015 PF17678 Glycosyl hydrolase family 92 N-terminal domain DGN02_23025 PF10947 Protein of unknown function (DUF2628) DGN02_23030 PF00990 Diguanylate cyclase, GGDEF domain DGN02_23035 PF05651 Putative sugar diacid recognition DGN02_23035 PF17853 GGDEF-like domain DGN02_23035 PF13556 PucR C-terminal helix-turn-helix domain DGN02_23040 PF02595 Glycerate kinase family DGN02_23045 PF07690 Major Facilitator Superfamily DGN02_23060 PF10672 S-adenosylmethionine-dependent methyltransferase DGN02_23060 PF17785 PUA-like domain DGN02_23070 PF03741 Integral membrane protein TerC family DGN02_23075 PF01694 Rhomboid family DGN02_23080 PF03009 Glycerophosphoryl diester phosphodiesterase family DGN02_23090 PF01569 PAP2 superfamily DGN02_23095 PF01926 50S ribosome-binding GTPase DGN02_23095 PF12631 MnmE helical domain DGN02_23095 PF10396 GTP-binding protein TrmE N-terminus DGN02_23110 PF02096 60Kd inner membrane protein DGN02_23110 PF14849 YidC periplasmic domain DGN02_23115 PF00825 Ribonuclease P DGN02_23120 PF00468 Ribosomal protein L34 DGN02_23195 PF03421 YopJ Serine/Threonine acetyltransferase DGN02_23225 PF02796 Helix-turn-helix domain of resolvase DGN02_23225 PF00239 Resolvase, N terminal domain DGN02_23235 PF01850 PIN domain DGN02_23290 PF03743 Bacterial conjugation TrbI-like protein DGN02_23305 PF04610 TrbL/VirB6 plasmid conjugal transfer protein DGN02_23315 PF03135 CagE, TrbE, VirB family, component of type IV transporter system DGN02_23330 PF00437 Type II/IV secretion system protein DGN02_23355 PF00872 Transposase, Mutator family DGN02_23375 PF02534 Type IV secretory system Conjugative DNA transfer DGN02_23440 PF03377 TAL effector repeat