locus-tag class description FYK61_00005 PF00308 Bacterial dnaA protein FYK61_00005 PF08299 Bacterial dnaA protein helix-turn-helix FYK61_00005 PF11638 DnaA N-terminal domain FYK61_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain FYK61_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain FYK61_00010 PF02767 DNA polymerase III beta subunit, central domain FYK61_00015 PF02463 RecF/RecN/SMC N terminal domain FYK61_00020 PF00204 DNA gyrase B FYK61_00020 PF00986 DNA gyrase B subunit, carboxyl terminus FYK61_00020 PF01751 Toprim domain FYK61_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_00020 PF18053 DNA gyrase B subunit insert domain FYK61_00030 PF01435 Peptidase family M48 FYK61_00040 PF03544 Gram-negative bacterial TonB protein C-terminal FYK61_00045 PF01618 MotA/TolQ/ExbB proton channel family FYK61_00050 PF02472 Biopolymer transport protein ExbD/TolR FYK61_00055 PF02472 Biopolymer transport protein ExbD/TolR FYK61_00060 PF02472 Biopolymer transport protein ExbD/TolR FYK61_00065 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ FYK61_00075 PF13091 PLD-like domain FYK61_00075 PF13396 Phospholipase_D-nuclease N-terminal FYK61_00090 PF04055 Radical SAM superfamily FYK61_00100 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) FYK61_00115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FYK61_00115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FYK61_00120 PF03572 Peptidase family S41 FYK61_00120 PF13180 PDZ domain FYK61_00125 PF01551 Peptidase family M23 FYK61_00135 PF04389 Peptidase family M28 FYK61_00145 PF00150 Cellulase (glycosyl hydrolase family 5) FYK61_00150 PF00150 Cellulase (glycosyl hydrolase family 5) FYK61_00155 PF00150 Cellulase (glycosyl hydrolase family 5) FYK61_00160 PF08240 Alcohol dehydrogenase GroES-like domain FYK61_00160 PF00107 Zinc-binding dehydrogenase FYK61_00170 PF07992 Pyridine nucleotide-disulphide oxidoreductase FYK61_00170 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FYK61_00175 PF01493 GXGXG motif FYK61_00175 PF01645 Conserved region in glutamate synthase FYK61_00175 PF04898 Glutamate synthase central domain FYK61_00175 PF00310 Glutamine amidotransferases class-II FYK61_00255 PF00270 DEAD/DEAH box helicase FYK61_00255 PF09369 Domain of unknown function (DUF1998) FYK61_00255 PF00271 Helicase conserved C-terminal domain FYK61_00260 PF03006 Haemolysin-III related FYK61_00280 PF00106 short chain dehydrogenase FYK61_00290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_00290 PF03466 LysR substrate binding domain FYK61_00305 PF02525 Flavodoxin-like fold FYK61_00335 PF01872 RibD C-terminal domain FYK61_00360 PF05532 CsbD-like FYK61_00380 PF16485 Protealysin propeptide FYK61_00380 PF02868 Thermolysin metallopeptidase, alpha-helical domain FYK61_00380 PF01447 Thermolysin metallopeptidase, catalytic domain FYK61_00390 PF13344 Haloacid dehalogenase-like hydrolase FYK61_00390 PF00293 NUDIX domain FYK61_00410 PF00085 Thioredoxin FYK61_00415 PF08946 Osmosensory transporter coiled coil FYK61_00415 PF00083 Sugar (and other) transporter FYK61_00455 PF17863 AAA lid domain FYK61_00455 PF07726 ATPase family associated with various cellular activities (AAA) FYK61_00490 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain FYK61_00495 PF00155 Aminotransferase class I and II FYK61_00500 PF00593 TonB dependent receptor FYK61_00500 PF07715 TonB-dependent Receptor Plug Domain FYK61_00515 PF00171 Aldehyde dehydrogenase family FYK61_00535 PF02735 Ku70/Ku80 beta-barrel domain FYK61_00540 PF01070 FMN-dependent dehydrogenase FYK61_00545 PF00144 Beta-lactamase FYK61_00550 PF07730 Histidine kinase FYK61_00555 PF00072 Response regulator receiver domain FYK61_00555 PF00196 Bacterial regulatory proteins, luxR family FYK61_00575 PF00486 Transcriptional regulatory protein, C terminal FYK61_00575 PF18500 CadC C-terminal domain 1 FYK61_00580 PF12241 Trans-2-enoyl-CoA reductase catalytic region FYK61_00580 PF07055 Enoyl reductase FAD binding domain FYK61_00580 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase FYK61_00590 PF00294 pfkB family carbohydrate kinase FYK61_00675 PF00795 Carbon-nitrogen hydrolase FYK61_00675 PF02540 NAD synthase FYK61_00690 PF00128 Alpha amylase, catalytic domain FYK61_00690 PF11896 Domain of unknown function (DUF3416) FYK61_00695 PF16657 Maltogenic Amylase, C-terminal domain FYK61_00695 PF00128 Alpha amylase, catalytic domain FYK61_00700 PF02806 Alpha amylase, C-terminal all-beta domain FYK61_00700 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FYK61_00700 PF00128 Alpha amylase, catalytic domain FYK61_00710 PF00248 Aldo/keto reductase family FYK61_00715 PF00135 Carboxylesterase family FYK61_00720 PF07859 alpha/beta hydrolase fold FYK61_00720 PF13472 GDSL-like Lipase/Acylhydrolase family FYK61_00730 PF03480 Bacterial extracellular solute-binding protein, family 7 FYK61_00740 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FYK61_00745 PF04616 Glycosyl hydrolases family 43 FYK61_00745 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain FYK61_00750 PF00356 Bacterial regulatory proteins, lacI family FYK61_00755 PF04962 KduI/IolB family FYK61_00770 PF00657 GDSL-like Lipase/Acylhydrolase FYK61_00780 PF00351 Biopterin-dependent aromatic amino acid hydroxylase FYK61_00785 PF01037 Lrp/AsnC ligand binding domain FYK61_00790 PF00593 TonB dependent receptor FYK61_00790 PF07660 Secretin and TonB N terminus short domain FYK61_00790 PF07715 TonB-dependent Receptor Plug Domain FYK61_00795 PF01734 Patatin-like phospholipase FYK61_00805 PF00005 ABC transporter FYK61_00820 PF00005 ABC transporter FYK61_00825 PF00528 Binding-protein-dependent transport system inner membrane component FYK61_00835 PF12867 DinB superfamily FYK61_00835 PF03781 Sulfatase-modifying factor enzyme 1 FYK61_00865 PF10609 NUBPL iron-transfer P-loop NTPase FYK61_00865 PF01883 Iron-sulfur cluster assembly protein FYK61_00880 PF13091 PLD-like domain FYK61_00885 PF03061 Thioesterase superfamily FYK61_00915 PF00107 Zinc-binding dehydrogenase FYK61_00915 PF08240 Alcohol dehydrogenase GroES-like domain FYK61_00925 PF02673 Bacitracin resistance protein BacA FYK61_00930 PF03951 Glutamine synthetase, beta-Grasp domain FYK61_00930 PF00120 Glutamine synthetase, catalytic domain FYK61_00935 PF00543 Nitrogen regulatory protein P-II FYK61_00940 PF00909 Ammonium Transporter Family FYK61_00945 PF00989 PAS fold FYK61_00945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_00945 PF00512 His Kinase A (phospho-acceptor) domain FYK61_00950 PF02954 Bacterial regulatory protein, Fis family FYK61_00950 PF00072 Response regulator receiver domain FYK61_00950 PF00158 Sigma-54 interaction domain FYK61_00955 PF00080 Copper/zinc superoxide dismutase (SODC) FYK61_00960 PF00080 Copper/zinc superoxide dismutase (SODC) FYK61_00975 PF02803 Thiolase, C-terminal domain FYK61_00975 PF00108 Thiolase, N-terminal domain FYK61_01010 PF00581 Rhodanese-like domain FYK61_01015 PF02556 Preprotein translocase subunit SecB FYK61_01020 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FYK61_01020 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FYK61_01035 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FYK61_01035 PF00205 Thiamine pyrophosphate enzyme, central domain FYK61_01035 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FYK61_01040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_01045 PF02954 Bacterial regulatory protein, Fis family FYK61_01045 PF00072 Response regulator receiver domain FYK61_01045 PF00158 Sigma-54 interaction domain FYK61_01060 PF07690 Major Facilitator Superfamily FYK61_01065 PF00588 SpoU rRNA Methylase family FYK61_01080 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FYK61_01080 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FYK61_01085 PF13784 Fic/DOC family N-terminal FYK61_01085 PF02661 Fic/DOC family FYK61_01090 PF00561 alpha/beta hydrolase fold FYK61_01095 PF03692 Putative zinc- or iron-chelating domain FYK61_01100 PF00501 AMP-binding enzyme FYK61_01105 PF00486 Transcriptional regulatory protein, C terminal FYK61_01105 PF00072 Response regulator receiver domain FYK61_01110 PF00144 Beta-lactamase FYK61_01115 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family FYK61_01135 PF03109 ABC1 family FYK61_01145 PF00849 RNA pseudouridylate synthase FYK61_01155 PF00472 RF-1 domain FYK61_01165 PF01112 Asparaginase FYK61_01170 PF01432 Peptidase family M3 FYK61_01175 PF12706 Beta-lactamase superfamily domain FYK61_01195 PF12833 Helix-turn-helix domain FYK61_01200 PF00999 Sodium/hydrogen exchanger family FYK61_01205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_01205 PF03466 LysR substrate binding domain FYK61_01210 PF01274 Malate synthase FYK61_01215 PF00463 Isocitrate lyase family FYK61_01220 PF00990 Diguanylate cyclase, GGDEF domain FYK61_01240 PF00326 Prolyl oligopeptidase family FYK61_01245 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FYK61_01245 PF00364 Biotin-requiring enzyme FYK61_01245 PF18140 Propionyl-coenzyme A carboxylase BT domain FYK61_01245 PF02785 Biotin carboxylase C-terminal domain FYK61_01245 PF00289 Biotin carboxylase, N-terminal domain FYK61_01250 PF01039 Carboxyl transferase domain FYK61_01255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FYK61_01255 PF02770 Acyl-CoA dehydrogenase, middle domain FYK61_01255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FYK61_01310 PF02492 CobW/HypB/UreG, nucleotide-binding domain FYK61_01310 PF07683 Cobalamin synthesis protein cobW C-terminal domain FYK61_01330 PF03969 AFG1-like ATPase FYK61_01335 PF01047 MarR family FYK61_01340 PF02566 OsmC-like protein FYK61_01345 PF12697 Alpha/beta hydrolase family FYK61_01365 PF00107 Zinc-binding dehydrogenase FYK61_01365 PF16884 N-terminal domain of oxidoreductase FYK61_01370 PF00248 Aldo/keto reductase family FYK61_01380 PF00849 RNA pseudouridylate synthase FYK61_01385 PF00593 TonB dependent receptor FYK61_01395 PF08482 ATP-dependent helicase C-terminal FYK61_01395 PF00271 Helicase conserved C-terminal domain FYK61_01395 PF04408 Helicase associated domain (HA2) FYK61_01395 PF00270 DEAD/DEAH box helicase FYK61_01400 PF07308 Protein of unknown function (DUF1456) FYK61_01405 PF00576 HIUase/Transthyretin family FYK61_01410 PF13454 FAD-NAD(P)-binding FYK61_01415 PF01014 Uricase FYK61_01415 PF09349 OHCU decarboxylase FYK61_01430 PF00266 Aminotransferase class-V FYK61_01435 PF07687 Peptidase dimerisation domain FYK61_01435 PF01546 Peptidase family M20/M25/M40 FYK61_01445 PF00561 alpha/beta hydrolase fold FYK61_01460 PF01425 Amidase FYK61_01465 PF01156 Inosine-uridine preferring nucleoside hydrolase FYK61_01475 PF00860 Permease family FYK61_01480 PF00111 2Fe-2S iron-sulfur cluster binding domain FYK61_01485 PF00355 Rieske [2Fe-2S] domain FYK61_01490 PF03466 LysR substrate binding domain FYK61_01490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_01495 PF01026 TatD related DNase FYK61_01505 PF03466 LysR substrate binding domain FYK61_01505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_01510 PF07690 Major Facilitator Superfamily FYK61_01520 PF08386 TAP-like protein FYK61_01520 PF00561 alpha/beta hydrolase fold FYK61_01525 PF02146 Sir2 family FYK61_01530 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FYK61_01535 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FYK61_01535 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FYK61_01545 PF00551 Formyl transferase FYK61_01550 PF00072 Response regulator receiver domain FYK61_01550 PF00486 Transcriptional regulatory protein, C terminal FYK61_01555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_01555 PF00512 His Kinase A (phospho-acceptor) domain FYK61_01555 PF00672 HAMP domain FYK61_01560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FYK61_01560 PF00529 HlyD membrane-fusion protein of T1SS FYK61_01565 PF00873 AcrB/AcrD/AcrF family FYK61_01570 PF08139 Prokaryotic membrane lipoprotein lipid attachment site FYK61_01570 PF02321 Outer membrane efflux protein FYK61_01580 PF02219 Methylenetetrahydrofolate reductase FYK61_01585 PF02677 Epoxyqueuosine reductase QueH FYK61_01590 PF03466 LysR substrate binding domain FYK61_01590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_01595 PF03358 NADPH-dependent FMN reductase FYK61_01605 PF08267 Cobalamin-independent synthase, N-terminal domain FYK61_01605 PF01717 Cobalamin-independent synthase, Catalytic domain FYK61_01610 PF03812 2-keto-3-deoxygluconate permease FYK61_01620 PF05368 NmrA-like family FYK61_01625 PF01638 HxlR-like helix-turn-helix FYK61_01655 PF00920 Dehydratase family FYK61_01670 PF00132 Bacterial transferase hexapeptide (six repeats) FYK61_01675 PF07690 Major Facilitator Superfamily FYK61_01680 PF11871 Domain of unknown function (DUF3391) FYK61_01680 PF01966 HD domain FYK61_01700 PF00171 Aldehyde dehydrogenase family FYK61_01710 PF01494 FAD binding domain FYK61_01720 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FYK61_01720 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FYK61_01725 PF00230 Major intrinsic protein FYK61_01730 PF16901 C-terminal domain of alpha-glycerophosphate oxidase FYK61_01730 PF01266 FAD dependent oxidoreductase FYK61_01735 PF00455 DeoR C terminal sensor domain FYK61_01735 PF08220 DeoR-like helix-turn-helix domain FYK61_01740 PF00111 2Fe-2S iron-sulfur cluster binding domain FYK61_01740 PF00970 Oxidoreductase FAD-binding domain FYK61_01745 PF00355 Rieske [2Fe-2S] domain FYK61_01750 PF01144 Coenzyme A transferase FYK61_01755 PF01144 Coenzyme A transferase FYK61_01760 PF02803 Thiolase, C-terminal domain FYK61_01760 PF00108 Thiolase, N-terminal domain FYK61_01765 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal FYK61_01765 PF00775 Dioxygenase FYK61_01775 PF00206 Lyase FYK61_01775 PF10397 Adenylosuccinate lyase C-terminus FYK61_01780 PF12146 Serine aminopeptidase, S33 FYK61_01785 PF02627 Carboxymuconolactone decarboxylase family FYK61_01795 PF01614 Bacterial transcriptional regulator FYK61_01795 PF09339 IclR helix-turn-helix domain FYK61_01805 PF07859 alpha/beta hydrolase fold FYK61_01810 PF10677 Protein of unknown function (DUF2490) FYK61_01815 PF01134 Glucose inhibited division protein A FYK61_01815 PF13932 GidA associated domain FYK61_01825 PF00291 Pyridoxal-phosphate dependent enzyme FYK61_01845 PF13649 Methyltransferase domain FYK61_01855 PF12697 Alpha/beta hydrolase family FYK61_01865 PF00155 Aminotransferase class I and II FYK61_01870 PF04055 Radical SAM superfamily FYK61_01870 PF06968 Biotin and Thiamin Synthesis associated domain FYK61_01880 PF01040 UbiA prenyltransferase family FYK61_01940 PF02796 Helix-turn-helix domain of resolvase FYK61_01940 PF00239 Resolvase, N terminal domain FYK61_01960 PF05819 NolX protein FYK61_02000 PF03211 Pectate lyase FYK61_02030 PF01313 Bacterial export proteins, family 3 FYK61_02035 PF00813 FliP family FYK61_02050 PF00771 FHIPEP family FYK61_02055 PF01312 FlhB HrpN YscU SpaS Family FYK61_02070 PF01514 Secretory protein of YscJ/FliF family FYK61_02085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FYK61_02085 PF02874 ATP synthase alpha/beta family, beta-barrel domain FYK61_02085 PF18269 T3SS EscN ATPase C-terminal domain FYK61_02095 PF01311 Bacterial export proteins, family 1 FYK61_02100 PF00263 Bacterial type II and III secretion system protein FYK61_02100 PF03958 Bacterial type II/III secretion system short domain FYK61_02110 PF01464 Transglycosylase SLT domain FYK61_02125 PF00924 Mechanosensitive ion channel FYK61_02125 PF12795 Mechanosensitive ion channel porin domain FYK61_02125 PF12794 Mechanosensitive ion channel inner membrane domain 1 FYK61_02130 PF00884 Sulfatase FYK61_02135 PF03109 ABC1 family FYK61_02140 PF05661 Protein of unknown function (DUF808) FYK61_02145 PF00990 Diguanylate cyclase, GGDEF domain FYK61_02150 PF08323 Starch synthase catalytic domain FYK61_02150 PF00534 Glycosyl transferases group 1 FYK61_02155 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FYK61_02155 PF02806 Alpha amylase, C-terminal all-beta domain FYK61_02155 PF00128 Alpha amylase, catalytic domain FYK61_02160 PF11941 Domain of unknown function (DUF3459) FYK61_02160 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FYK61_02160 PF00128 Alpha amylase, catalytic domain FYK61_02165 PF02446 4-alpha-glucanotransferase FYK61_02170 PF00128 Alpha amylase, catalytic domain FYK61_02180 PF00128 Alpha amylase, catalytic domain FYK61_02180 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FYK61_02185 PF13460 NAD(P)H-binding FYK61_02200 PF06903 VirK protein FYK61_02205 PF02321 Outer membrane efflux protein FYK61_02220 PF00873 AcrB/AcrD/AcrF family FYK61_02235 PF00271 Helicase conserved C-terminal domain FYK61_02235 PF00270 DEAD/DEAH box helicase FYK61_02240 PF02817 e3 binding domain FYK61_02240 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FYK61_02240 PF00364 Biotin-requiring enzyme FYK61_02250 PF02780 Transketolase, C-terminal domain FYK61_02250 PF02779 Transketolase, pyrimidine binding domain FYK61_02255 PF00676 Dehydrogenase E1 component FYK61_02265 PF03301 Tryptophan 2,3-dioxygenase FYK61_02270 PF00854 POT family FYK61_02280 PF01047 MarR family FYK61_02285 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FYK61_02290 PF04209 homogentisate 1,2-dioxygenase FYK61_02305 PF03334 Na+/H+ antiporter subunit FYK61_02310 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) FYK61_02320 PF00361 Proton-conducting membrane transporter FYK61_02325 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FYK61_02330 PF13244 Domain of unknown function (DUF4040) FYK61_02330 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter FYK61_02330 PF00361 Proton-conducting membrane transporter FYK61_02330 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FYK61_02345 PF01447 Thermolysin metallopeptidase, catalytic domain FYK61_02345 PF07504 Fungalysin/Thermolysin Propeptide Motif FYK61_02345 PF02868 Thermolysin metallopeptidase, alpha-helical domain FYK61_02345 PF01483 Proprotein convertase P-domain FYK61_02355 PF01259 SAICAR synthetase FYK61_02360 PF05099 Tellurite resistance protein TerB FYK61_02360 PF00226 DnaJ domain FYK61_02370 PF00834 Ribulose-phosphate 3 epimerase family FYK61_02375 PF00583 Acetyltransferase (GNAT) family FYK61_02380 PF00781 Diacylglycerol kinase catalytic domain FYK61_02385 PF04715 Anthranilate synthase component I, N terminal region FYK61_02385 PF00425 chorismate binding enzyme FYK61_02400 PF00117 Glutamine amidotransferase class-I FYK61_02410 PF02885 Glycosyl transferase family, helical bundle domain FYK61_02410 PF00591 Glycosyl transferase family, a/b domain FYK61_02415 PF00218 Indole-3-glycerol phosphate synthase FYK61_02425 PF00027 Cyclic nucleotide-binding domain FYK61_02425 PF00325 Bacterial regulatory proteins, crp family FYK61_02430 PF02675 S-adenosylmethionine decarboxylase FYK61_02435 PF00893 Small Multidrug Resistance protein FYK61_02440 PF03232 Ubiquinone biosynthesis protein COQ7 FYK61_02445 PF00572 Ribosomal protein L13 FYK61_02450 PF00380 Ribosomal protein S9/S16 FYK61_02465 PF00293 NUDIX domain FYK61_02475 PF00210 Ferritin-like domain FYK61_02480 PF00672 HAMP domain FYK61_02480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_02480 PF01627 Hpt domain FYK61_02480 PF00072 Response regulator receiver domain FYK61_02480 PF00512 His Kinase A (phospho-acceptor) domain FYK61_02480 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FYK61_02485 PF00072 Response regulator receiver domain FYK61_02485 PF00486 Transcriptional regulatory protein, C terminal FYK61_02505 PF01521 Iron-sulphur cluster biosynthesis FYK61_02515 PF09297 NADH pyrophosphatase zinc ribbon domain FYK61_02515 PF00293 NUDIX domain FYK61_02515 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain FYK61_02520 PF17113 Regulatory signalling modulator protein AmpE FYK61_02520 PF03186 CobD/Cbib protein FYK61_02535 PF07690 Major Facilitator Superfamily FYK61_02540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_02540 PF03466 LysR substrate binding domain FYK61_02545 PF07690 Major Facilitator Superfamily FYK61_02550 PF12805 FUSC-like inner membrane protein yccS FYK61_02555 PF02844 Phosphoribosylglycinamide synthetase, N domain FYK61_02555 PF02843 Phosphoribosylglycinamide synthetase, C domain FYK61_02555 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain FYK61_02565 PF01808 AICARFT/IMPCHase bienzyme FYK61_02565 PF02142 MGS-like domain FYK61_02570 PF01066 CDP-alcohol phosphatidyltransferase FYK61_02575 PF12147 Putative methyltransferase FYK61_02575 PF12146 Serine aminopeptidase, S33 FYK61_02580 PF00782 Dual specificity phosphatase, catalytic domain FYK61_02610 PF02954 Bacterial regulatory protein, Fis family FYK61_02625 PF01381 Helix-turn-helix FYK61_02650 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FYK61_02650 PF00289 Biotin carboxylase, N-terminal domain FYK61_02650 PF02785 Biotin carboxylase C-terminal domain FYK61_02660 PF00364 Biotin-requiring enzyme FYK61_02665 PF01220 Dehydroquinase class II FYK61_02670 PF11412 Disulphide bond corrector protein DsbC FYK61_02670 PF02683 Cytochrome C biogenesis protein transmembrane region FYK61_02675 PF03091 CutA1 divalent ion tolerance protein FYK61_02685 PF04231 Endonuclease I FYK61_02690 PF00166 Chaperonin 10 Kd subunit FYK61_02695 PF00118 TCP-1/cpn60 chaperonin family FYK61_02715 PF07715 TonB-dependent Receptor Plug Domain FYK61_02715 PF00593 TonB dependent receptor FYK61_02720 PF00793 DAHP synthetase I family FYK61_02735 PF08450 SMP-30/Gluconolactonase/LRE-like region FYK61_02745 PF08335 GlnD PII-uridylyltransferase FYK61_02745 PF03710 Glutamate-ammonia ligase adenylyltransferase FYK61_02750 PF02592 Putative vitamin uptake transporter FYK61_02775 PF00881 Nitroreductase family FYK61_02780 PF04264 YceI-like domain FYK61_02800 PF16957 Malonate decarboxylase, alpha subunit, transporter FYK61_02805 PF06857 Malonate decarboxylase delta subunit (MdcD) FYK61_02810 PF01039 Carboxyl transferase domain FYK61_02820 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG FYK61_02825 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase FYK61_02835 PF00698 Acyl transferase domain FYK61_02845 PF07729 FCD domain FYK61_02845 PF00392 Bacterial regulatory proteins, gntR family FYK61_02880 PF07745 Glycosyl hydrolase family 53 FYK61_02885 PF00456 Transketolase, thiamine diphosphate binding domain FYK61_02885 PF17831 Pyruvate dehydrogenase E1 component middle domain FYK61_02895 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FYK61_02975 PF14508 Glycosyl-hydrolase 97 N-terminal FYK61_02975 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation FYK61_02975 PF10566 Glycoside hydrolase 97 FYK61_02990 PF00106 short chain dehydrogenase FYK61_03005 PF00106 short chain dehydrogenase FYK61_03015 PF13409 Glutathione S-transferase, N-terminal domain FYK61_03050 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region FYK61_03050 PF00326 Prolyl oligopeptidase family FYK61_03055 PF07759 Protein of unknown function (DUF1615) FYK61_03085 PF00892 EamA-like transporter family FYK61_03090 PF00497 Bacterial extracellular solute-binding proteins, family 3 FYK61_03100 PF00324 Amino acid permease FYK61_03110 PF01544 CorA-like Mg2+ transporter protein FYK61_03120 PF01204 Trehalase FYK61_03130 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FYK61_03130 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FYK61_03155 PF03707 Bacterial signalling protein N terminal repeat FYK61_03155 PF00990 Diguanylate cyclase, GGDEF domain FYK61_03155 PF00563 EAL domain FYK61_03165 PF00672 HAMP domain FYK61_03165 PF02203 Tar ligand binding domain homologue FYK61_03165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_03170 PF00150 Cellulase (glycosyl hydrolase family 5) FYK61_03170 PF00553 Cellulose binding domain FYK61_03175 PF00916 Sulfate permease family FYK61_03175 PF01740 STAS domain FYK61_03180 PF00990 Diguanylate cyclase, GGDEF domain FYK61_03195 PF13632 Glycosyl transferase family group 2 FYK61_03205 PF07694 5TMR of 5TMR-LYT FYK61_03205 PF06580 Histidine kinase FYK61_03210 PF00072 Response regulator receiver domain FYK61_03210 PF04397 LytTr DNA-binding domain FYK61_03215 PF03900 Porphobilinogen deaminase, C-terminal domain FYK61_03215 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain FYK61_03240 PF00326 Prolyl oligopeptidase family FYK61_03240 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain FYK61_03245 PF00155 Aminotransferase class I and II FYK61_03250 PF00326 Prolyl oligopeptidase family FYK61_03250 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain FYK61_03255 PF04304 Protein of unknown function (DUF454) FYK61_03265 PF01678 Diaminopimelate epimerase FYK61_03275 PF00589 Phage integrase family FYK61_03275 PF02899 Phage integrase, N-terminal SAM-like domain FYK61_03280 PF00227 Proteasome subunit FYK61_03285 PF07724 AAA domain (Cdc48 subfamily) FYK61_03285 PF00004 ATPase family associated with various cellular activities (AAA) FYK61_03285 PF10431 C-terminal, D2-small domain, of ClpB protein FYK61_03295 PF13673 Acetyltransferase (GNAT) domain FYK61_03300 PF13533 Biotin-lipoyl like FYK61_03310 PF01209 ubiE/COQ5 methyltransferase family FYK61_03315 PF03707 Bacterial signalling protein N terminal repeat FYK61_03315 PF00563 EAL domain FYK61_03315 PF00990 Diguanylate cyclase, GGDEF domain FYK61_03320 PF11838 ERAP1-like C-terminal domain FYK61_03320 PF01433 Peptidase family M1 domain FYK61_03335 PF13360 PQQ-like domain FYK61_03340 PF00497 Bacterial extracellular solute-binding proteins, family 3 FYK61_03355 PF08240 Alcohol dehydrogenase GroES-like domain FYK61_03355 PF00107 Zinc-binding dehydrogenase FYK61_03365 PF02954 Bacterial regulatory protein, Fis family FYK61_03365 PF00158 Sigma-54 interaction domain FYK61_03365 PF01590 GAF domain FYK61_03370 PF00294 pfkB family carbohydrate kinase FYK61_03380 PF04085 rod shape-determining protein MreC FYK61_03390 PF03717 Penicillin-binding Protein dimerisation domain FYK61_03390 PF00905 Penicillin binding protein transpeptidase domain FYK61_03395 PF01098 Cell cycle protein FYK61_03400 PF00295 Glycosyl hydrolases family 28 FYK61_03405 PF13406 Transglycosylase SLT domain FYK61_03410 PF03330 Lytic transglycolase FYK61_03410 PF05036 Sporulation related domain FYK61_03415 PF07943 Penicillin-binding protein 5, C-terminal domain FYK61_03415 PF00768 D-alanyl-D-alanine carboxypeptidase FYK61_03425 PF04359 Protein of unknown function (DUF493) FYK61_03430 PF03099 Biotin/lipoate A/B protein ligase family FYK61_03435 PF04055 Radical SAM superfamily FYK61_03435 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family FYK61_03440 PF11818 C-terminal domain of tail specific protease (DUF3340) FYK61_03440 PF17804 Tail specific protease N-terminal domain FYK61_03440 PF03572 Peptidase family S41 FYK61_03440 PF00595 PDZ domain FYK61_03450 PF03466 LysR substrate binding domain FYK61_03450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_03460 PF00293 NUDIX domain FYK61_03460 PF01467 Cytidylyltransferase-like FYK61_03495 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FYK61_03495 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain FYK61_03500 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FYK61_03500 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FYK61_03505 PF04972 BON domain FYK61_03510 PF00360 Phytochrome region FYK61_03510 PF01590 GAF domain FYK61_03510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_03510 PF00512 His Kinase A (phospho-acceptor) domain FYK61_03510 PF08446 PAS fold FYK61_03515 PF00072 Response regulator receiver domain FYK61_03520 PF00512 His Kinase A (phospho-acceptor) domain FYK61_03520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_03525 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FYK61_03530 PF00106 short chain dehydrogenase FYK61_03570 PF03958 Bacterial type II/III secretion system short domain FYK61_03570 PF00263 Bacterial type II and III secretion system protein FYK61_03575 PF00437 Type II/IV secretion system protein FYK61_03580 PF00482 Type II secretion system (T2SS), protein F FYK61_03585 PF08334 Type II secretion system (T2SS), protein G FYK61_03585 PF07963 Prokaryotic N-terminal methylation motif FYK61_03590 PF07963 Prokaryotic N-terminal methylation motif FYK61_03590 PF12019 Type II transport protein GspH FYK61_03595 PF02501 Type II secretion system (T2SS), protein I FYK61_03595 PF07963 Prokaryotic N-terminal methylation motif FYK61_03600 PF11612 Type II secretion system (T2SS), protein J FYK61_03600 PF07963 Prokaryotic N-terminal methylation motif FYK61_03605 PF03934 Type II secretion system (T2SS), protein K FYK61_03630 PF00703 Glycosyl hydrolases family 2 FYK61_03630 PF16355 Domain of unknown function (DUF4982) FYK61_03630 PF02837 Glycosyl hydrolases family 2, sugar binding domain FYK61_03630 PF02836 Glycosyl hydrolases family 2, TIM barrel domain FYK61_03630 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 FYK61_03645 PF00392 Bacterial regulatory proteins, gntR family FYK61_03645 PF07702 UTRA domain FYK61_03650 PF07690 Major Facilitator Superfamily FYK61_03655 PF00356 Bacterial regulatory proteins, lacI family FYK61_03660 PF01380 SIS domain FYK61_03665 PF01979 Amidohydrolase family FYK61_03680 PF12627 Probable RNA and SrmB- binding site of polymerase A FYK61_03680 PF01966 HD domain FYK61_03680 PF01743 Poly A polymerase head domain FYK61_03685 PF00732 GMC oxidoreductase FYK61_03685 PF05199 GMC oxidoreductase FYK61_03690 PF00171 Aldehyde dehydrogenase family FYK61_03695 PF02028 BCCT, betaine/carnitine/choline family transporter FYK61_03710 PF01323 DSBA-like thioredoxin domain FYK61_03720 PF00034 Cytochrome c FYK61_03725 PF01926 50S ribosome-binding GTPase FYK61_03730 PF10996 Beta-Casp domain FYK61_03730 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain FYK61_03730 PF00753 Metallo-beta-lactamase superfamily FYK61_03735 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FYK61_03735 PF12833 Helix-turn-helix domain FYK61_03740 PF04107 Glutamate-cysteine ligase family 2(GCS2) FYK61_03745 PF00512 His Kinase A (phospho-acceptor) domain FYK61_03745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_03745 PF00672 HAMP domain FYK61_03750 PF00486 Transcriptional regulatory protein, C terminal FYK61_03750 PF00072 Response regulator receiver domain FYK61_03765 PF02583 Metal-sensitive transcriptional repressor FYK61_03770 PF08240 Alcohol dehydrogenase GroES-like domain FYK61_03770 PF00107 Zinc-binding dehydrogenase FYK61_03775 PF04828 Glutathione-dependent formaldehyde-activating enzyme FYK61_03780 PF00756 Putative esterase FYK61_03790 PF00155 Aminotransferase class I and II FYK61_03790 PF00392 Bacterial regulatory proteins, gntR family FYK61_03795 PF02567 Phenazine biosynthesis-like protein FYK61_03800 PF00892 EamA-like transporter family FYK61_03810 PF00005 ABC transporter FYK61_03810 PF12848 ABC transporter FYK61_03820 PF00464 Serine hydroxymethyltransferase FYK61_03825 PF03477 ATP cone domain FYK61_03835 PF01872 RibD C-terminal domain FYK61_03835 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FYK61_03845 PF00677 Lumazine binding domain FYK61_03850 PF00925 GTP cyclohydrolase II FYK61_03850 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FYK61_03855 PF00885 6,7-dimethyl-8-ribityllumazine synthase FYK61_03860 PF01029 NusB family FYK61_03865 PF00586 AIR synthase related protein, N-terminal domain FYK61_03865 PF02769 AIR synthase related protein, C-terminal domain FYK61_03885 PF03814 Potassium-transporting ATPase A subunit FYK61_03895 PF02669 K+-transporting ATPase, c chain FYK61_03900 PF13493 Domain of unknown function (DUF4118) FYK61_03900 PF13492 GAF domain FYK61_03900 PF02702 Osmosensitive K+ channel His kinase sensor domain FYK61_03900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_03900 PF00512 His Kinase A (phospho-acceptor) domain FYK61_03905 PF00486 Transcriptional regulatory protein, C terminal FYK61_03905 PF00072 Response regulator receiver domain FYK61_03925 PF02913 FAD linked oxidases, C-terminal domain FYK61_03925 PF01565 FAD binding domain FYK61_03930 PF04307 LexA-binding, inner membrane-associated putative hydrolase FYK61_03935 PF02021 Uncharacterised protein family UPF0102 FYK61_03945 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FYK61_03960 PF02381 MraZ protein, putative antitoxin-like FYK61_03965 PF01795 MraW methylase family FYK61_03970 PF04999 Cell division protein FtsL FYK61_03975 PF03717 Penicillin-binding Protein dimerisation domain FYK61_03975 PF00905 Penicillin binding protein transpeptidase domain FYK61_03980 PF02875 Mur ligase family, glutamate ligase domain FYK61_03980 PF08245 Mur ligase middle domain FYK61_03980 PF01225 Mur ligase family, catalytic domain FYK61_03985 PF08245 Mur ligase middle domain FYK61_03985 PF02875 Mur ligase family, glutamate ligase domain FYK61_03985 PF01225 Mur ligase family, catalytic domain FYK61_03990 PF00953 Glycosyl transferase family 4 FYK61_03995 PF01098 Cell cycle protein FYK61_04000 PF04101 Glycosyltransferase family 28 C-terminal domain FYK61_04000 PF03033 Glycosyltransferase family 28 N-terminal domain FYK61_04005 PF02875 Mur ligase family, glutamate ligase domain FYK61_04005 PF01225 Mur ligase family, catalytic domain FYK61_04005 PF08245 Mur ligase middle domain FYK61_04010 PF07478 D-ala D-ala ligase C-terminus FYK61_04010 PF01820 D-ala D-ala ligase N-terminus FYK61_04015 PF03799 Cell division protein FtsQ FYK61_04015 PF08478 POTRA domain, FtsQ-type FYK61_04020 PF02491 SHS2 domain inserted in FTSA FYK61_04025 PF12327 FtsZ family, C-terminal domain FYK61_04025 PF00091 Tubulin/FtsZ family, GTPase domain FYK61_04030 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase FYK61_04040 PF08525 Opacity-associated protein A N-terminal motif FYK61_04040 PF01476 LysM domain FYK61_04040 PF01551 Peptidase family M23 FYK61_04045 PF07517 SecA DEAD-like domain FYK61_04045 PF01043 SecA preprotein cross-linking domain FYK61_04045 PF02810 SEC-C motif FYK61_04045 PF07516 SecA Wing and Scaffold domain FYK61_04050 PF00293 NUDIX domain FYK61_04060 PF02219 Methylenetetrahydrofolate reductase FYK61_04070 PF08240 Alcohol dehydrogenase GroES-like domain FYK61_04070 PF00107 Zinc-binding dehydrogenase FYK61_04070 PF16197 Ketoacyl-synthetase C-terminal extension FYK61_04070 PF00109 Beta-ketoacyl synthase, N-terminal domain FYK61_04070 PF02801 Beta-ketoacyl synthase, C-terminal domain FYK61_04070 PF00698 Acyl transferase domain FYK61_04070 PF14765 Polyketide synthase dehydratase FYK61_04070 PF08659 KR domain FYK61_04070 PF00550 Phosphopantetheine attachment site FYK61_04075 PF09286 Pro-kumamolisin, activation domain FYK61_04075 PF00082 Subtilase family FYK61_04085 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FYK61_04090 PF00128 Alpha amylase, catalytic domain FYK61_04110 PF00685 Sulfotransferase domain FYK61_04120 PF13649 Methyltransferase domain FYK61_04125 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FYK61_04125 PF05221 S-adenosyl-L-homocysteine hydrolase FYK61_04135 PF00311 Phosphoenolpyruvate carboxylase FYK61_04155 PF00691 OmpA family FYK61_04155 PF01389 OmpA-like transmembrane domain FYK61_04170 PF00328 Histidine phosphatase superfamily (branch 2) FYK61_04175 PF02772 S-adenosylmethionine synthetase, central domain FYK61_04175 PF00438 S-adenosylmethionine synthetase, N-terminal domain FYK61_04175 PF02773 S-adenosylmethionine synthetase, C-terminal domain FYK61_04185 PF13649 Methyltransferase domain FYK61_04190 PF01207 Dihydrouridine synthase (Dus) FYK61_04200 PF00294 pfkB family carbohydrate kinase FYK61_04205 PF01773 Na+ dependent nucleoside transporter N-terminus FYK61_04205 PF07670 Nucleoside recognition FYK61_04205 PF07662 Na+ dependent nucleoside transporter C-terminus FYK61_04210 PF00248 Aldo/keto reductase family FYK61_04220 PF07715 TonB-dependent Receptor Plug Domain FYK61_04220 PF00593 TonB dependent receptor FYK61_04240 PF00528 Binding-protein-dependent transport system inner membrane component FYK61_04245 PF00005 ABC transporter FYK61_04255 PF02668 Taurine catabolism dioxygenase TauD, TfdA family FYK61_04265 PF00005 ABC transporter FYK61_04270 PF13472 GDSL-like Lipase/Acylhydrolase family FYK61_04275 PF00486 Transcriptional regulatory protein, C terminal FYK61_04275 PF00072 Response regulator receiver domain FYK61_04280 PF08521 Two-component sensor kinase N-terminal FYK61_04280 PF00512 His Kinase A (phospho-acceptor) domain FYK61_04280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_04290 PF01219 Prokaryotic diacylglycerol kinase FYK61_04310 PF01790 Prolipoprotein diacylglyceryl transferase FYK61_04315 PF00303 Thymidylate synthase FYK61_04325 PF00186 Dihydrofolate reductase FYK61_04330 PF00158 Sigma-54 interaction domain FYK61_04335 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FYK61_04335 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FYK61_04340 PF00005 ABC transporter FYK61_04345 PF00528 Binding-protein-dependent transport system inner membrane component FYK61_04355 PF00296 Luciferase-like monooxygenase FYK61_04360 PF03358 NADPH-dependent FMN reductase FYK61_04375 PF00296 Luciferase-like monooxygenase FYK61_04380 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FYK61_04385 PF00528 Binding-protein-dependent transport system inner membrane component FYK61_04390 PF12911 N-terminal TM domain of oligopeptide transport permease C FYK61_04390 PF00528 Binding-protein-dependent transport system inner membrane component FYK61_04395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FYK61_04395 PF00005 ABC transporter FYK61_04400 PF00149 Calcineurin-like phosphoesterase FYK61_04405 PF04379 ApaG domain FYK61_04410 PF00398 Ribosomal RNA adenine dimethylase FYK61_04415 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FYK61_04420 PF00639 PPIC-type PPIASE domain FYK61_04420 PF09312 SurA N-terminal domain FYK61_04425 PF03968 OstA-like protein FYK61_04425 PF04453 LPS transport system D FYK61_04430 PF00850 Histone deacetylase domain FYK61_04435 PF01923 Cobalamin adenosyltransferase FYK61_04450 PF01494 FAD binding domain FYK61_04455 PF01494 FAD binding domain FYK61_04475 PF00392 Bacterial regulatory proteins, gntR family FYK61_04475 PF07729 FCD domain FYK61_04480 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase FYK61_04485 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase FYK61_04485 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit FYK61_04490 PF03466 LysR substrate binding domain FYK61_04490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_04495 PF13193 AMP-binding enzyme C-terminal domain FYK61_04495 PF00501 AMP-binding enzyme FYK61_04500 PF00171 Aldehyde dehydrogenase family FYK61_04505 PF00378 Enoyl-CoA hydratase/isomerase FYK61_04530 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FYK61_04530 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FYK61_04535 PF18125 RlmM ferredoxin-like domain FYK61_04535 PF01728 FtsJ-like methyltransferase FYK61_04560 PF00892 EamA-like transporter family FYK61_04565 PF00749 tRNA synthetases class I (E and Q), catalytic domain FYK61_04565 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain FYK61_04580 PF00072 Response regulator receiver domain FYK61_04580 PF00990 Diguanylate cyclase, GGDEF domain FYK61_04585 PF01627 Hpt domain FYK61_04585 PF00072 Response regulator receiver domain FYK61_04585 PF00672 HAMP domain FYK61_04585 PF17149 Periplasmic sensor domain found in signal transduction proteins FYK61_04585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_04585 PF00512 His Kinase A (phospho-acceptor) domain FYK61_04590 PF00072 Response regulator receiver domain FYK61_04590 PF00196 Bacterial regulatory proteins, luxR family FYK61_04600 PF01625 Peptide methionine sulfoxide reductase FYK61_04610 PF00923 Transaldolase/Fructose-6-phosphate aldolase FYK61_04615 PF14760 Rnk N-terminus FYK61_04615 PF01272 Transcription elongation factor, GreA/GreB, C-term FYK61_04620 PF03466 LysR substrate binding domain FYK61_04620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_04625 PF07992 Pyridine nucleotide-disulphide oxidoreductase FYK61_04625 PF13192 Thioredoxin domain FYK61_04630 PF10417 C-terminal domain of 1-Cys peroxiredoxin FYK61_04630 PF00578 AhpC/TSA family FYK61_04635 PF05175 Methyltransferase small domain FYK61_04635 PF17827 PrmC N-terminal domain FYK61_04640 PF00561 alpha/beta hydrolase fold FYK61_04650 PF00293 NUDIX domain FYK61_04655 PF00476 DNA polymerase family A FYK61_04655 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FYK61_04655 PF01367 5'-3' exonuclease, C-terminal SAM fold FYK61_04655 PF01612 3'-5' exonuclease FYK61_04705 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch FYK61_04710 PF02233 NAD(P) transhydrogenase beta subunit FYK61_04725 PF01063 Amino-transferase class IV FYK61_04730 PF00082 Subtilase family FYK61_04730 PF04151 Bacterial pre-peptidase C-terminal domain FYK61_04735 PF04151 Bacterial pre-peptidase C-terminal domain FYK61_04735 PF00082 Subtilase family FYK61_04740 PF00082 Subtilase family FYK61_04740 PF04151 Bacterial pre-peptidase C-terminal domain FYK61_04745 PF04073 Aminoacyl-tRNA editing domain FYK61_04755 PF17189 Glycosyl hydrolase family 30 beta sandwich domain FYK61_04755 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain FYK61_04765 PF03358 NADPH-dependent FMN reductase FYK61_04770 PF03631 Virulence factor BrkB FYK61_04775 PF08534 Redoxin FYK61_04780 PF00708 Acylphosphatase FYK61_04790 PF03976 Polyphosphate kinase 2 (PPK2) FYK61_04795 PF00994 Probable molybdopterin binding domain FYK61_04805 PF00472 RF-1 domain FYK61_04805 PF03462 PCRF domain FYK61_04810 PF01488 Shikimate / quinate 5-dehydrogenase FYK61_04810 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain FYK61_04810 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain FYK61_04820 PF03550 Outer membrane lipoprotein LolB FYK61_04825 PF00288 GHMP kinases N terminal domain FYK61_04825 PF08544 GHMP kinases C terminal FYK61_04835 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FYK61_04835 PF14572 Phosphoribosyl synthetase-associated domain FYK61_04840 PF01386 Ribosomal L25p family FYK61_04840 PF14693 Ribosomal protein TL5, C-terminal domain FYK61_04845 PF01195 Peptidyl-tRNA hydrolase FYK61_04850 PF06071 Protein of unknown function (DUF933) FYK61_04850 PF01926 50S ribosome-binding GTPase FYK61_04870 PF03143 Elongation factor Tu C-terminal domain FYK61_04870 PF03144 Elongation factor Tu domain 2 FYK61_04870 PF00009 Elongation factor Tu GTP binding domain FYK61_04880 PF00584 SecE/Sec61-gamma subunits of protein translocation complex FYK61_04885 PF00467 KOW motif FYK61_04885 PF02357 Transcription termination factor nusG FYK61_04890 PF00298 Ribosomal protein L11, RNA binding domain FYK61_04890 PF03946 Ribosomal protein L11, N-terminal domain FYK61_04895 PF00687 Ribosomal protein L1p/L10e family FYK61_04900 PF00466 Ribosomal protein L10 FYK61_04905 PF00542 Ribosomal protein L7/L12 C-terminal domain FYK61_04905 PF16320 Ribosomal protein L7/L12 dimerisation domain FYK61_04910 PF04565 RNA polymerase Rpb2, domain 3 FYK61_04910 PF10385 RNA polymerase beta subunit external 1 domain FYK61_04910 PF00562 RNA polymerase Rpb2, domain 6 FYK61_04910 PF04560 RNA polymerase Rpb2, domain 7 FYK61_04910 PF04563 RNA polymerase beta subunit FYK61_04910 PF04561 RNA polymerase Rpb2, domain 2 FYK61_04915 PF04998 RNA polymerase Rpb1, domain 5 FYK61_04915 PF00623 RNA polymerase Rpb1, domain 2 FYK61_04915 PF04983 RNA polymerase Rpb1, domain 3 FYK61_04915 PF05000 RNA polymerase Rpb1, domain 4 FYK61_04915 PF04997 RNA polymerase Rpb1, domain 1 FYK61_04920 PF00164 Ribosomal protein S12/S23 FYK61_04925 PF00177 Ribosomal protein S7p/S5e FYK61_04930 PF14492 Elongation Factor G, domain II FYK61_04930 PF03144 Elongation factor Tu domain 2 FYK61_04930 PF00679 Elongation factor G C-terminus FYK61_04930 PF03764 Elongation factor G, domain IV FYK61_04930 PF00009 Elongation factor Tu GTP binding domain FYK61_04935 PF03144 Elongation factor Tu domain 2 FYK61_04935 PF03143 Elongation factor Tu C-terminal domain FYK61_04935 PF00009 Elongation factor Tu GTP binding domain FYK61_04940 PF00338 Ribosomal protein S10p/S20e FYK61_04945 PF00297 Ribosomal protein L3 FYK61_04950 PF00573 Ribosomal protein L4/L1 family FYK61_04955 PF00276 Ribosomal protein L23 FYK61_04960 PF03947 Ribosomal Proteins L2, C-terminal domain FYK61_04960 PF00181 Ribosomal Proteins L2, RNA binding domain FYK61_04965 PF00203 Ribosomal protein S19 FYK61_04970 PF00237 Ribosomal protein L22p/L17e FYK61_04975 PF07650 KH domain FYK61_04975 PF00189 Ribosomal protein S3, C-terminal domain FYK61_04980 PF00252 Ribosomal protein L16p/L10e FYK61_04985 PF00831 Ribosomal L29 protein FYK61_04990 PF00366 Ribosomal protein S17 FYK61_04995 PF00238 Ribosomal protein L14p/L23e FYK61_05000 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FYK61_05000 PF00467 KOW motif FYK61_05005 PF00281 Ribosomal protein L5 FYK61_05005 PF00673 ribosomal L5P family C-terminus FYK61_05010 PF00253 Ribosomal protein S14p/S29e FYK61_05015 PF00410 Ribosomal protein S8 FYK61_05020 PF00347 Ribosomal protein L6 FYK61_05025 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FYK61_05030 PF03719 Ribosomal protein S5, C-terminal domain FYK61_05030 PF00333 Ribosomal protein S5, N-terminal domain FYK61_05035 PF00327 Ribosomal protein L30p/L7e FYK61_05040 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FYK61_05045 PF00344 SecY translocase FYK61_05050 PF00416 Ribosomal protein S13/S18 FYK61_05055 PF00411 Ribosomal protein S11 FYK61_05060 PF01479 S4 domain FYK61_05060 PF00163 Ribosomal protein S4/S9 N-terminal domain FYK61_05065 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FYK61_05065 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FYK61_05065 PF01000 RNA polymerase Rpb3/RpoA insert domain FYK61_05070 PF01196 Ribosomal protein L17 FYK61_05075 PF02600 Disulfide bond formation protein DsbB FYK61_05085 PF01474 Class-II DAHP synthetase family FYK61_05100 PF01425 Amidase FYK61_05110 PF03144 Elongation factor Tu domain 2 FYK61_05110 PF00679 Elongation factor G C-terminus FYK61_05110 PF00009 Elongation factor Tu GTP binding domain FYK61_05115 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FYK61_05120 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain FYK61_05120 PF00056 lactate/malate dehydrogenase, NAD binding domain FYK61_05125 PF00043 Glutathione S-transferase, C-terminal domain FYK61_05125 PF02798 Glutathione S-transferase, N-terminal domain FYK61_05135 PF07992 Pyridine nucleotide-disulphide oxidoreductase FYK61_05135 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FYK61_05140 PF00107 Zinc-binding dehydrogenase FYK61_05140 PF08240 Alcohol dehydrogenase GroES-like domain FYK61_05145 PF00691 OmpA family FYK61_05145 PF05736 OprF membrane domain FYK61_05155 PF00849 RNA pseudouridylate synthase FYK61_05165 PF00155 Aminotransferase class I and II FYK61_05175 PF00528 Binding-protein-dependent transport system inner membrane component FYK61_05180 PF00528 Binding-protein-dependent transport system inner membrane component FYK61_05185 PF00005 ABC transporter FYK61_05185 PF12857 TOBE-like domain FYK61_05185 PF17850 CysA C-terminal regulatory domain FYK61_05195 PF00107 Zinc-binding dehydrogenase FYK61_05195 PF08240 Alcohol dehydrogenase GroES-like domain FYK61_05205 PF04185 Phosphoesterase family FYK61_05205 PF05506 Domain of unknown function (DUF756) FYK61_05210 PF10459 Peptidase S46 FYK61_05215 PF00300 Histidine phosphatase superfamily (branch 1) FYK61_05220 PF02875 Mur ligase family, glutamate ligase domain FYK61_05220 PF08245 Mur ligase middle domain FYK61_05235 PF00156 Phosphoribosyl transferase domain FYK61_05240 PF04305 Protein of unknown function (DUF455) FYK61_05255 PF00149 Calcineurin-like phosphoesterase FYK61_05260 PF01569 PAP2 superfamily FYK61_05265 PF00534 Glycosyl transferases group 1 FYK61_05265 PF13439 Glycosyltransferase Family 4 FYK61_05270 PF02541 Ppx/GppA phosphatase family FYK61_05275 PF02503 Polyphosphate kinase middle domain FYK61_05275 PF13090 Polyphosphate kinase C-terminal domain 2 FYK61_05275 PF17941 Polyphosphate kinase C-terminal domain 1 FYK61_05275 PF13089 Polyphosphate kinase N-terminal domain FYK61_05280 PF00989 PAS fold FYK61_05280 PF11808 Phosphate regulon sensor protein PhoR FYK61_05280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_05280 PF00512 His Kinase A (phospho-acceptor) domain FYK61_05285 PF00486 Transcriptional regulatory protein, C terminal FYK61_05285 PF00072 Response regulator receiver domain FYK61_05290 PF01435 Peptidase family M48 FYK61_05290 PF13181 Tetratricopeptide repeat FYK61_05295 PF00462 Glutaredoxin FYK61_05305 PF00180 Isocitrate/isopropylmalate dehydrogenase FYK61_05335 PF00512 His Kinase A (phospho-acceptor) domain FYK61_05335 PF00989 PAS fold FYK61_05335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_05345 PF05697 Bacterial trigger factor protein (TF) FYK61_05345 PF05698 Bacterial trigger factor protein (TF) C-terminus FYK61_05350 PF00574 Clp protease FYK61_05355 PF10431 C-terminal, D2-small domain, of ClpB protein FYK61_05355 PF06689 ClpX C4-type zinc finger FYK61_05355 PF07724 AAA domain (Cdc48 subfamily) FYK61_05360 PF05362 Lon protease (S16) C-terminal proteolytic domain FYK61_05360 PF02190 ATP-dependent protease La (LON) substrate-binding domain FYK61_05360 PF00004 ATPase family associated with various cellular activities (AAA) FYK61_05365 PF00216 Bacterial DNA-binding protein FYK61_05395 PF00753 Metallo-beta-lactamase superfamily FYK61_05395 PF16123 Hydroxyacylglutathione hydrolase C-terminus FYK61_05405 PF00075 RNase H FYK61_05410 PF00929 Exonuclease FYK61_05430 PF01075 Glycosyltransferase family 9 (heptosyltransferase) FYK61_05440 PF00753 Metallo-beta-lactamase superfamily FYK61_05440 PF12706 Beta-lactamase superfamily domain FYK61_05445 PF06463 Molybdenum Cofactor Synthesis C FYK61_05445 PF04055 Radical SAM superfamily FYK61_05455 PF01967 MoaC family FYK61_05460 PF02597 ThiS family FYK61_05465 PF02391 MoaE protein FYK61_05480 PF07669 Eco57I restriction-modification methylase FYK61_05515 PF00580 UvrD/REP helicase N-terminal domain FYK61_05515 PF13361 UvrD-like helicase C-terminal domain FYK61_05535 PF04002 RadC-like JAB domain FYK61_05590 PF12169 DNA polymerase III subunits gamma and tau domain III FYK61_05590 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding FYK61_05590 PF12170 DNA polymerase III tau subunit V interacting with alpha FYK61_05595 PF02575 YbaB/EbfC DNA-binding family FYK61_05600 PF13662 Toprim domain FYK61_05600 PF02132 RecR protein FYK61_05605 PF01230 HIT domain FYK61_05615 PF01841 Transglutaminase-like superfamily FYK61_05615 PF13559 Domain of unknown function (DUF4129) FYK61_05615 PF11992 Domain of unknown function (DUF3488) FYK61_05625 PF17863 AAA lid domain FYK61_05625 PF07726 ATPase family associated with various cellular activities (AAA) FYK61_05650 PF02545 Maf-like protein FYK61_05655 PF02620 Large ribosomal RNA subunit accumulation protein YceD FYK61_05660 PF01783 Ribosomal L32p protein family FYK61_05665 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FYK61_05665 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FYK61_05675 PF00698 Acyl transferase domain FYK61_05685 PF00550 Phosphopantetheine attachment site FYK61_05690 PF00109 Beta-ketoacyl synthase, N-terminal domain FYK61_05690 PF02801 Beta-ketoacyl synthase, C-terminal domain FYK61_05695 PF04715 Anthranilate synthase component I, N terminal region FYK61_05695 PF00425 chorismate binding enzyme FYK61_05700 PF02618 YceG-like family FYK61_05705 PF09115 DNA polymerase III, delta subunit, C terminal FYK61_05725 PF02954 Bacterial regulatory protein, Fis family FYK61_05725 PF06506 Propionate catabolism activator FYK61_05725 PF00158 Sigma-54 interaction domain FYK61_05735 PF00285 Citrate synthase, C-terminal domain FYK61_05740 PF00694 Aconitase C-terminal domain FYK61_05740 PF00330 Aconitase family (aconitate hydratase) FYK61_05750 PF04303 PrpF protein FYK61_05755 PF00593 TonB dependent receptor FYK61_05755 PF07715 TonB-dependent Receptor Plug Domain FYK61_05765 PF11974 Bacterial alpha-2-macroglobulin MG3 domain FYK61_05765 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain FYK61_05765 PF00207 Alpha-2-macroglobulin family FYK61_05765 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain FYK61_05765 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain FYK61_05765 PF01835 MG2 domain FYK61_05765 PF17962 Bacterial macroglobulin domain 6 FYK61_05765 PF07703 Alpha-2-macroglobulin bait region domain FYK61_05780 PF00912 Transglycosylase FYK61_05780 PF06832 Penicillin-Binding Protein C-terminus Family FYK61_05780 PF00905 Penicillin binding protein transpeptidase domain FYK61_05790 PF08534 Redoxin FYK61_05800 PF01556 DnaJ C terminal domain FYK61_05800 PF00226 DnaJ domain FYK61_05805 PF00072 Response regulator receiver domain FYK61_05810 PF01145 SPFH domain / Band 7 family FYK61_05810 PF12221 Bacterial membrane protein N terminal FYK61_05815 PF01145 SPFH domain / Band 7 family FYK61_05825 PF00709 Adenylosuccinate synthetase FYK61_05830 PF11838 ERAP1-like C-terminal domain FYK61_05830 PF01433 Peptidase family M1 domain FYK61_05845 PF00440 Bacterial regulatory proteins, tetR family FYK61_05875 PF02384 N-6 DNA Methylase FYK61_05875 PF12161 HsdM N-terminal domain FYK61_05900 PF11867 Domain of unknown function (DUF3387) FYK61_05900 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) FYK61_05900 PF18766 SWI2/SNF2 ATPase FYK61_05930 PF13456 Reverse transcriptase-like FYK61_05930 PF00300 Histidine phosphatase superfamily (branch 1) FYK61_05935 PF01256 Carbohydrate kinase FYK61_05945 PF00723 Glycosyl hydrolases family 15 FYK61_05955 PF07971 Glycosyl hydrolase family 92 FYK61_05955 PF17678 Glycosyl hydrolase family 92 N-terminal domain FYK61_05960 PF00106 short chain dehydrogenase FYK61_05975 PF07992 Pyridine nucleotide-disulphide oxidoreductase FYK61_06005 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FYK61_06005 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase FYK61_06010 PF00941 FAD binding domain in molybdopterin dehydrogenase FYK61_06010 PF03450 CO dehydrogenase flavoprotein C-terminal domain FYK61_06015 PF00111 2Fe-2S iron-sulfur cluster binding domain FYK61_06015 PF01799 [2Fe-2S] binding domain FYK61_06050 PF00717 Peptidase S24-like FYK61_06050 PF01726 LexA DNA binding domain FYK61_06065 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FYK61_06065 PF02811 PHP domain FYK61_06065 PF14579 Helix-hairpin-helix motif FYK61_06065 PF07733 Bacterial DNA polymerase III alpha NTPase domain FYK61_06080 PF03169 OPT oligopeptide transporter protein FYK61_06095 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region FYK61_06095 PF00326 Prolyl oligopeptidase family FYK61_06095 PF07676 WD40-like Beta Propeller Repeat FYK61_06110 PF02311 AraC-like ligand binding domain FYK61_06110 PF12833 Helix-turn-helix domain FYK61_06130 PF00199 Catalase FYK61_06130 PF06628 Catalase-related immune-responsive FYK61_06130 PF18011 C-terminal domain found in long catalases FYK61_06135 PF00248 Aldo/keto reductase family FYK61_06140 PF00135 Carboxylesterase family FYK61_06145 PF02347 Glycine cleavage system P-protein FYK61_06150 PF07690 Major Facilitator Superfamily FYK61_06165 PF00884 Sulfatase FYK61_06165 PF08019 Phosphoethanolamine transferase EptA/EptB FYK61_06180 PF00072 Response regulator receiver domain FYK61_06180 PF00486 Transcriptional regulatory protein, C terminal FYK61_06185 PF00512 His Kinase A (phospho-acceptor) domain FYK61_06185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_06185 PF08521 Two-component sensor kinase N-terminal FYK61_06195 PF03776 Septum formation topological specificity factor MinE FYK61_06200 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FYK61_06205 PF05209 Septum formation inhibitor MinC, N-terminal domain FYK61_06205 PF03775 Septum formation inhibitor MinC, C-terminal domain FYK61_06215 PF07730 Histidine kinase FYK61_06220 PF00196 Bacterial regulatory proteins, luxR family FYK61_06220 PF00072 Response regulator receiver domain FYK61_06235 PF00730 HhH-GPD superfamily base excision DNA repair protein FYK61_06260 PF02222 ATP-grasp domain FYK61_06270 PF04377 Arginine-tRNA-protein transferase, C terminus FYK61_06270 PF04376 Arginine-tRNA-protein transferase, N terminus FYK61_06295 PF00378 Enoyl-CoA hydratase/isomerase FYK61_06310 PF00005 ABC transporter FYK61_06310 PF17755 UvrA DNA-binding domain FYK61_06310 PF17760 UvrA interaction domain FYK61_06315 PF00829 Ribosomal prokaryotic L21 protein FYK61_06320 PF01016 Ribosomal L27 protein FYK61_06325 PF01018 GTP1/OBG FYK61_06325 PF01926 50S ribosome-binding GTPase FYK61_06330 PF01649 Ribosomal protein S20 FYK61_06335 PF03023 Lipid II flippase MurJ FYK61_06340 PF06574 FAD synthetase FYK61_06340 PF01687 Riboflavin kinase FYK61_06345 PF06827 Zinc finger found in FPG and IleRS FYK61_06345 PF08264 Anticodon-binding domain of tRNA FYK61_06345 PF00133 tRNA synthetases class I (I, L, M and V) FYK61_06350 PF01252 Signal peptidase (SPase) II FYK61_06355 PF02401 LytB protein FYK61_06385 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FYK61_06385 PF06481 COX Aromatic Rich Motif FYK61_06390 PF00115 Cytochrome C and Quinol oxidase polypeptide I FYK61_06395 PF00510 Cytochrome c oxidase subunit III FYK61_06400 PF03626 Prokaryotic Cytochrome C oxidase subunit IV FYK61_06410 PF18073 Rubredoxin metal binding domain FYK61_06415 PF05656 Protein of unknown function (DUF805) FYK61_06425 PF12833 Helix-turn-helix domain FYK61_06440 PF01740 STAS domain FYK61_06440 PF08678 Rsbr N terminal FYK61_06445 PF01740 STAS domain FYK61_06450 PF13581 Histidine kinase-like ATPase domain FYK61_06460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_06460 PF00072 Response regulator receiver domain FYK61_06460 PF00672 HAMP domain FYK61_06460 PF01627 Hpt domain FYK61_06460 PF17149 Periplasmic sensor domain found in signal transduction proteins FYK61_06460 PF00512 His Kinase A (phospho-acceptor) domain FYK61_06465 PF08448 PAS fold FYK61_06465 PF13188 PAS domain FYK61_06465 PF00072 Response regulator receiver domain FYK61_06465 PF00512 His Kinase A (phospho-acceptor) domain FYK61_06465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_06470 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain FYK61_06470 PF04616 Glycosyl hydrolases family 43 FYK61_06475 PF00593 TonB dependent receptor FYK61_06475 PF07715 TonB-dependent Receptor Plug Domain FYK61_06480 PF00085 Thioredoxin FYK61_06485 PF07237 Protein of unknown function (DUF1428) FYK61_06490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_06490 PF00512 His Kinase A (phospho-acceptor) domain FYK61_06490 PF13493 Domain of unknown function (DUF4118) FYK61_06490 PF02702 Osmosensitive K+ channel His kinase sensor domain FYK61_06490 PF13492 GAF domain FYK61_06495 PF01339 CheB methylesterase FYK61_06500 PF03705 CheR methyltransferase, all-alpha domain FYK61_06500 PF01739 CheR methyltransferase, SAM binding domain FYK61_06505 PF01627 Hpt domain FYK61_06505 PF00512 His Kinase A (phospho-acceptor) domain FYK61_06505 PF00672 HAMP domain FYK61_06505 PF00072 Response regulator receiver domain FYK61_06505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_06505 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FYK61_06510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_06510 PF13426 PAS domain FYK61_06510 PF00072 Response regulator receiver domain FYK61_06515 PF00072 Response regulator receiver domain FYK61_06525 PF06964 Alpha-L-arabinofuranosidase C-terminal domain FYK61_06530 PF01263 Aldose 1-epimerase FYK61_06535 PF01578 Cytochrome C assembly protein FYK61_06540 PF00448 SRP54-type protein, GTPase domain FYK61_06540 PF02881 SRP54-type protein, helical bundle domain FYK61_06540 PF02978 Signal peptide binding domain FYK61_06545 PF03060 Nitronate monooxygenase FYK61_06550 PF01063 Amino-transferase class IV FYK61_06555 PF00886 Ribosomal protein S16 FYK61_06560 PF01782 RimM N-terminal domain FYK61_06560 PF05239 PRC-barrel domain FYK61_06565 PF01746 tRNA (Guanine-1)-methyltransferase FYK61_06570 PF01245 Ribosomal protein L19 FYK61_06575 PF01554 MatE FYK61_06595 PF01479 S4 domain FYK61_06600 PF00141 Peroxidase FYK61_06610 PF05188 MutS domain II FYK61_06610 PF05192 MutS domain III FYK61_06610 PF01624 MutS domain I FYK61_06610 PF00488 MutS domain V FYK61_06610 PF05190 MutS family domain IV FYK61_06620 PF05593 RHS Repeat FYK61_06620 PF03527 RHS protein FYK61_06640 PF00092 von Willebrand factor type A domain FYK61_06695 PF01527 Transposase FYK61_06715 PF13287 Fn3 associated FYK61_06715 PF16355 Domain of unknown function (DUF4982) FYK61_06715 PF00703 Glycosyl hydrolases family 2 FYK61_06715 PF02836 Glycosyl hydrolases family 2, TIM barrel domain FYK61_06715 PF02837 Glycosyl hydrolases family 2, sugar binding domain FYK61_06720 PF07745 Glycosyl hydrolase family 53 FYK61_06730 PF06114 IrrE N-terminal-like domain FYK61_06730 PF09856 Predicted transcriptional regulator (DUF2083) FYK61_06730 PF01381 Helix-turn-helix FYK61_06735 PF00171 Aldehyde dehydrogenase family FYK61_06740 PF02770 Acyl-CoA dehydrogenase, middle domain FYK61_06740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FYK61_06740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FYK61_06745 PF00378 Enoyl-CoA hydratase/isomerase FYK61_06750 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FYK61_06750 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FYK61_06750 PF00378 Enoyl-CoA hydratase/isomerase FYK61_06755 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FYK61_06755 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FYK61_06780 PF13276 HTH-like domain FYK61_06780 PF13683 Integrase core domain FYK61_06785 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FYK61_06785 PF00378 Enoyl-CoA hydratase/isomerase FYK61_06785 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FYK61_06790 PF04542 Sigma-70 region 2 FYK61_06790 PF08281 Sigma-70, region 4 FYK61_06800 PF13180 PDZ domain FYK61_06805 PF00679 Elongation factor G C-terminus FYK61_06805 PF06421 GTP-binding protein LepA C-terminus FYK61_06805 PF00009 Elongation factor Tu GTP binding domain FYK61_06805 PF03144 Elongation factor Tu domain 2 FYK61_06810 PF10502 Signal peptidase, peptidase S26 FYK61_06820 PF14622 Ribonuclease-III-like FYK61_06820 PF00035 Double-stranded RNA binding motif FYK61_06825 PF01926 50S ribosome-binding GTPase FYK61_06825 PF07650 KH domain FYK61_06830 PF02565 Recombination protein O C terminal FYK61_06830 PF11967 Recombination protein O N terminal FYK61_06840 PF05958 tRNA (Uracil-5-)-methyltransferase FYK61_06845 PF01928 CYTH domain FYK61_06850 PF01323 DSBA-like thioredoxin domain FYK61_06855 PF01593 Flavin containing amine oxidoreductase FYK61_06860 PF04244 Deoxyribodipyrimidine photo-lyase-related protein FYK61_06865 PF00933 Glycosyl hydrolase family 3 N terminal domain FYK61_06870 PF00156 Phosphoribosyl transferase domain FYK61_06875 PF01048 Phosphorylase superfamily FYK61_06880 PF00313 'Cold-shock' DNA-binding domain FYK61_06885 PF01494 FAD binding domain FYK61_06895 PF00271 Helicase conserved C-terminal domain FYK61_06895 PF08494 DEAD/H associated FYK61_06895 PF00270 DEAD/DEAH box helicase FYK61_06900 PF04679 ATP dependent DNA ligase C terminal region FYK61_06900 PF01068 ATP dependent DNA ligase domain FYK61_06900 PF04675 DNA ligase N terminus FYK61_06910 PF01068 ATP dependent DNA ligase domain FYK61_06910 PF04675 DNA ligase N terminus FYK61_06910 PF04679 ATP dependent DNA ligase C terminal region FYK61_06925 PF00072 Response regulator receiver domain FYK61_06925 PF00990 Diguanylate cyclase, GGDEF domain FYK61_06940 PF02803 Thiolase, C-terminal domain FYK61_06940 PF00108 Thiolase, N-terminal domain FYK61_06945 PF12951 Passenger-associated-transport-repeat FYK61_06945 PF00082 Subtilase family FYK61_06945 PF03797 Autotransporter beta-domain FYK61_06950 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FYK61_06950 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FYK61_06960 PF01863 Protein of unknown function DUF45 FYK61_06965 PF07043 Protein of unknown function (DUF1328) FYK61_06975 PF01258 Prokaryotic dksA/traR C4-type zinc finger FYK61_06995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FYK61_07005 PF03831 PhnA domain FYK61_07005 PF08274 PhnA Zinc-Ribbon FYK61_07010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FYK61_07050 PF03706 Lysylphosphatidylglycerol synthase TM region FYK61_07050 PF09924 Uncharacterised conserved protein (DUF2156) FYK61_07060 PF01042 Endoribonuclease L-PSP FYK61_07105 PF04542 Sigma-70 region 2 FYK61_07105 PF04545 Sigma-70, region 4 FYK61_07120 PF04060 Putative Fe-S cluster FYK61_07130 PF01588 Putative tRNA binding domain FYK61_07130 PF09334 tRNA synthetases class I (M) FYK61_07145 PF00005 ABC transporter FYK61_07145 PF13732 Domain of unknown function (DUF4162) FYK61_07150 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FYK61_07155 PF00324 Amino acid permease FYK61_07160 PF02574 Homocysteine S-methyltransferase FYK61_07170 PF02592 Putative vitamin uptake transporter FYK61_07190 PF03551 Transcriptional regulator PadR-like family FYK61_07210 PF03653 Uncharacterised protein family (UPF0093) FYK61_07225 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FYK61_07230 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FYK61_07230 PF02811 PHP domain FYK61_07230 PF14579 Helix-hairpin-helix motif FYK61_07230 PF07733 Bacterial DNA polymerase III alpha NTPase domain FYK61_07230 PF01336 OB-fold nucleic acid binding domain FYK61_07235 PF01351 Ribonuclease HII FYK61_07240 PF02684 Lipid-A-disaccharide synthetase FYK61_07245 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FYK61_07245 PF00132 Bacterial transferase hexapeptide (six repeats) FYK61_07250 PF07977 FabA-like domain FYK61_07255 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FYK61_07255 PF00132 Bacterial transferase hexapeptide (six repeats) FYK61_07265 PF07244 Surface antigen variable number repeat FYK61_07265 PF01103 Surface antigen FYK61_07270 PF02163 Peptidase family M50 FYK61_07270 PF17820 PDZ domain FYK61_07275 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FYK61_07275 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FYK61_07275 PF13288 DXP reductoisomerase C-terminal domain FYK61_07285 PF01255 Putative undecaprenyl diphosphate synthase FYK61_07290 PF01765 Ribosome recycling factor FYK61_07295 PF00696 Amino acid kinase family FYK61_07300 PF00072 Response regulator receiver domain FYK61_07300 PF00990 Diguanylate cyclase, GGDEF domain FYK61_07305 PF00889 Elongation factor TS FYK61_07310 PF00318 Ribosomal protein S2 FYK61_07345 PF00557 Metallopeptidase family M24 FYK61_07350 PF08335 GlnD PII-uridylyltransferase FYK61_07350 PF01909 Nucleotidyltransferase domain FYK61_07350 PF01966 HD domain FYK61_07355 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal FYK61_07355 PF00132 Bacterial transferase hexapeptide (six repeats) FYK61_07355 PF14602 Hexapeptide repeat of succinyl-transferase FYK61_07360 PF03960 ArsC family FYK61_07365 PF07687 Peptidase dimerisation domain FYK61_07365 PF01546 Peptidase family M20/M25/M40 FYK61_07370 PF00733 Asparagine synthase FYK61_07370 PF13537 Glutamine amidotransferase domain FYK61_07380 PF00593 TonB dependent receptor FYK61_07380 PF07715 TonB-dependent Receptor Plug Domain FYK61_07385 PF01804 Penicillin amidase FYK61_07390 PF00210 Ferritin-like domain FYK61_07395 PF05724 Thiopurine S-methyltransferase (TPMT) FYK61_07400 PF00521 DNA gyrase/topoisomerase IV, subunit A FYK61_07400 PF03989 DNA gyrase C-terminal domain, beta-propeller FYK61_07415 PF02321 Outer membrane efflux protein FYK61_07420 PF00529 HlyD membrane-fusion protein of T1SS FYK61_07420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FYK61_07425 PF07690 Major Facilitator Superfamily FYK61_07435 PF00933 Glycosyl hydrolase family 3 N terminal domain FYK61_07435 PF14310 Fibronectin type III-like domain FYK61_07435 PF01915 Glycosyl hydrolase family 3 C-terminal domain FYK61_07445 PF00854 POT family FYK61_07470 PF12802 MarR family FYK61_07475 PF01432 Peptidase family M3 FYK61_07480 PF00255 Glutathione peroxidase FYK61_07485 PF00970 Oxidoreductase FAD-binding domain FYK61_07485 PF00175 Oxidoreductase NAD-binding domain FYK61_07490 PF00005 ABC transporter FYK61_07495 PF05681 Fumarate hydratase (Fumerase) FYK61_07495 PF05683 Fumarase C-terminus FYK61_07505 PF00484 Carbonic anhydrase FYK61_07510 PF02253 Phospholipase A1 FYK61_07520 PF00313 'Cold-shock' DNA-binding domain FYK61_07535 PF00899 ThiF family FYK61_07540 PF01026 TatD related DNase FYK61_07555 PF02770 Acyl-CoA dehydrogenase, middle domain FYK61_07555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FYK61_07555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FYK61_07565 PF02798 Glutathione S-transferase, N-terminal domain FYK61_07565 PF00043 Glutathione S-transferase, C-terminal domain FYK61_07570 PF13537 Glutamine amidotransferase domain FYK61_07570 PF00733 Asparagine synthase FYK61_07575 PF03358 NADPH-dependent FMN reductase FYK61_07580 PF00772 DnaB-like helicase N terminal domain FYK61_07580 PF03796 DnaB-like helicase C terminal domain FYK61_07585 PF03441 FAD binding domain of DNA photolyase FYK61_07585 PF00875 DNA photolyase FYK61_07590 PF05736 OprF membrane domain FYK61_07590 PF00691 OmpA family FYK61_07595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_07595 PF03466 LysR substrate binding domain FYK61_07610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FYK61_07615 PF00873 AcrB/AcrD/AcrF family FYK61_07620 PF00106 short chain dehydrogenase FYK61_07625 PF02321 Outer membrane efflux protein FYK61_07630 PF00990 Diguanylate cyclase, GGDEF domain FYK61_07640 PF00990 Diguanylate cyclase, GGDEF domain FYK61_07660 PF13419 Haloacid dehalogenase-like hydrolase FYK61_07665 PF17782 DprA winged helix domain FYK61_07665 PF02481 DNA recombination-mediator protein A FYK61_07760 PF00082 Subtilase family FYK61_07765 PF01668 SmpB protein FYK61_07770 PF03364 Polyketide cyclase / dehydrase and lipid transport FYK61_07775 PF03658 RnfH family Ubiquitin FYK61_07780 PF04355 SmpA / OmlA family FYK61_07785 PF01475 Ferric uptake regulator family FYK61_07790 PF02463 RecF/RecN/SMC N terminal domain FYK61_07795 PF01628 HrcA protein C terminal domain FYK61_07795 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding FYK61_07800 PF01025 GrpE FYK61_07805 PF00012 Hsp70 protein FYK61_07810 PF00684 DnaJ central domain FYK61_07810 PF01556 DnaJ C terminal domain FYK61_07810 PF00226 DnaJ domain FYK61_07815 PF08543 Phosphomethylpyrimidine kinase FYK61_07840 PF03412 Peptidase C39 family FYK61_07840 PF00005 ABC transporter FYK61_07840 PF00664 ABC transporter transmembrane region FYK61_07845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_07845 PF03466 LysR substrate binding domain FYK61_07850 PF00005 ABC transporter FYK61_07850 PF00664 ABC transporter transmembrane region FYK61_07855 PF01205 Uncharacterized protein family UPF0029 FYK61_07860 PF03641 Possible lysine decarboxylase FYK61_07865 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FYK61_07865 PF07992 Pyridine nucleotide-disulphide oxidoreductase FYK61_07870 PF02817 e3 binding domain FYK61_07870 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FYK61_07870 PF00364 Biotin-requiring enzyme FYK61_07875 PF02779 Transketolase, pyrimidine binding domain FYK61_07875 PF16870 2-oxoglutarate dehydrogenase C-terminal FYK61_07875 PF00676 Dehydrogenase E1 component FYK61_07875 PF16078 2-oxoglutarate dehydrogenase N-terminus FYK61_07885 PF08007 Cupin superfamily protein FYK61_07895 PF08328 Adenylosuccinate lyase C-terminal FYK61_07895 PF00206 Lyase FYK61_07905 PF00571 CBS domain FYK61_07905 PF03471 Transporter associated domain FYK61_07905 PF01595 Cyclin M transmembrane N-terminal domain FYK61_07910 PF00206 Lyase FYK61_07910 PF10415 Fumarase C C-terminus FYK61_07935 PF00005 ABC transporter FYK61_07940 PF00392 Bacterial regulatory proteins, gntR family FYK61_07950 PF00255 Glutathione peroxidase FYK61_07955 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FYK61_07955 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FYK61_07960 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FYK61_07960 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FYK61_07960 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FYK61_07965 PF04102 SlyX FYK61_07980 PF00356 Bacterial regulatory proteins, lacI family FYK61_07985 PF07690 Major Facilitator Superfamily FYK61_07990 PF00294 pfkB family carbohydrate kinase FYK61_08000 PF02607 B12 binding domain FYK61_08000 PF02574 Homocysteine S-methyltransferase FYK61_08000 PF02310 B12 binding domain FYK61_08000 PF02965 Vitamin B12 dependent methionine synthase, activation domain FYK61_08000 PF00809 Pterin binding enzyme FYK61_08005 PF02574 Homocysteine S-methyltransferase FYK61_08005 PF00809 Pterin binding enzyme FYK61_08010 PF01209 ubiE/COQ5 methyltransferase family FYK61_08015 PF02770 Acyl-CoA dehydrogenase, middle domain FYK61_08015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FYK61_08015 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FYK61_08020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FYK61_08020 PF02770 Acyl-CoA dehydrogenase, middle domain FYK61_08020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FYK61_08050 PF08206 Ribonuclease B OB domain FYK61_08050 PF00773 RNB domain FYK61_08050 PF00575 S1 RNA binding domain FYK61_08050 PF08461 Ribonuclease R winged-helix domain FYK61_08050 PF17876 Cold shock domain FYK61_08060 PF08032 RNA 2'-O ribose methyltransferase substrate binding FYK61_08060 PF00588 SpoU rRNA Methylase family FYK61_08065 PF00990 Diguanylate cyclase, GGDEF domain FYK61_08070 PF00929 Exonuclease FYK61_08080 PF01895 PhoU domain FYK61_08085 PF00005 ABC transporter FYK61_08090 PF00528 Binding-protein-dependent transport system inner membrane component FYK61_08095 PF00528 Binding-protein-dependent transport system inner membrane component FYK61_08100 PF12849 PBP superfamily domain FYK61_08105 PF12849 PBP superfamily domain FYK61_08120 PF00484 Carbonic anhydrase FYK61_08125 PF00916 Sulfate permease family FYK61_08125 PF01740 STAS domain FYK61_08130 PF10576 Iron-sulfur binding domain of endonuclease III FYK61_08130 PF00730 HhH-GPD superfamily base excision DNA repair protein FYK61_08130 PF00633 Helix-hairpin-helix motif FYK61_08140 PF00378 Enoyl-CoA hydratase/isomerase FYK61_08145 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FYK61_08145 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FYK61_08150 PF00293 NUDIX domain FYK61_08155 PF00581 Rhodanese-like domain FYK61_08195 PF02926 THUMP domain FYK61_08195 PF10672 S-adenosylmethionine-dependent methyltransferase FYK61_08195 PF01170 Putative RNA methylase family UPF0020 FYK61_08200 PF01513 ATP-NAD kinase FYK61_08225 PF08411 Exonuclease C-terminal FYK61_08225 PF00929 Exonuclease FYK61_08230 PF01494 FAD binding domain FYK61_08235 PF00266 Aminotransferase class-V FYK61_08245 PF06052 3-hydroxyanthranilic acid dioxygenase FYK61_08250 PF00484 Carbonic anhydrase FYK61_08295 PF00072 Response regulator receiver domain FYK61_08295 PF00196 Bacterial regulatory proteins, luxR family FYK61_08330 PF00152 tRNA synthetases class II (D, K and N) FYK61_08330 PF01336 OB-fold nucleic acid binding domain FYK61_08335 PF01521 Iron-sulphur cluster biosynthesis FYK61_08340 PF01250 Ribosomal protein S6 FYK61_08345 PF01084 Ribosomal protein S18 FYK61_08350 PF01281 Ribosomal protein L9, N-terminal domain FYK61_08350 PF03948 Ribosomal protein L9, C-terminal domain FYK61_08360 PF02463 RecF/RecN/SMC N terminal domain FYK61_08365 PF04354 ZipA, C-terminal FtsZ-binding domain FYK61_08375 PF00155 Aminotransferase class I and II FYK61_08380 PF03119 NAD-dependent DNA ligase C4 zinc finger domain FYK61_08380 PF03120 NAD-dependent DNA ligase OB-fold domain FYK61_08380 PF12826 Helix-hairpin-helix motif FYK61_08380 PF01653 NAD-dependent DNA ligase adenylation domain FYK61_08380 PF00533 BRCA1 C Terminus (BRCT) domain FYK61_08385 PF00152 tRNA synthetases class II (D, K and N) FYK61_08395 PF01008 Initiation factor 2 subunit family FYK61_08400 PF00521 DNA gyrase/topoisomerase IV, subunit A FYK61_08400 PF03989 DNA gyrase C-terminal domain, beta-propeller FYK61_08405 PF13360 PQQ-like domain FYK61_08415 PF17391 Urocanase N-terminal domain FYK61_08415 PF01175 Urocanase Rossmann-like domain FYK61_08415 PF17392 Urocanase C-terminal domain FYK61_08425 PF00221 Aromatic amino acid lyase FYK61_08430 PF07969 Amidohydrolase family FYK61_08440 PF07702 UTRA domain FYK61_08440 PF00392 Bacterial regulatory proteins, gntR family FYK61_08465 PF01794 Ferric reductase like transmembrane component FYK61_08470 PF00174 Oxidoreductase molybdopterin binding domain FYK61_08475 PF00266 Aminotransferase class-V FYK61_08480 PF01817 Chorismate mutase type II FYK61_08480 PF01842 ACT domain FYK61_08480 PF00800 Prephenate dehydratase FYK61_08485 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FYK61_08495 PF03544 Gram-negative bacterial TonB protein C-terminal FYK61_08500 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FYK61_08500 PF02403 Seryl-tRNA synthetase N-terminal domain FYK61_08505 PF02525 Flavodoxin-like fold FYK61_08510 PF03466 LysR substrate binding domain FYK61_08510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_08525 PF00672 HAMP domain FYK61_08525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_08525 PF02203 Tar ligand binding domain homologue FYK61_08530 PF01494 FAD binding domain FYK61_08540 PF13188 PAS domain FYK61_08540 PF00512 His Kinase A (phospho-acceptor) domain FYK61_08540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_08540 PF08448 PAS fold FYK61_08540 PF00072 Response regulator receiver domain FYK61_08545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_08545 PF00672 HAMP domain FYK61_08545 PF00512 His Kinase A (phospho-acceptor) domain FYK61_08545 PF01627 Hpt domain FYK61_08545 PF00072 Response regulator receiver domain FYK61_08545 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FYK61_08550 PF06745 KaiC FYK61_08555 PF13426 PAS domain FYK61_08555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_08555 PF00072 Response regulator receiver domain FYK61_08565 PF03918 Cytochrome C biogenesis protein FYK61_08570 PF08534 Redoxin FYK61_08575 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal FYK61_08575 PF01578 Cytochrome C assembly protein FYK61_08580 PF03100 CcmE FYK61_08585 PF04995 Heme exporter protein D (CcmD) FYK61_08590 PF01578 Cytochrome C assembly protein FYK61_08595 PF00082 Subtilase family FYK61_08605 PF08281 Sigma-70, region 4 FYK61_08605 PF04542 Sigma-70 region 2 FYK61_08615 PF00034 Cytochrome c FYK61_08630 PF05523 WxcM-like, C-terminal FYK61_08650 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FYK61_08655 PF01943 Polysaccharide biosynthesis protein FYK61_08660 PF00535 Glycosyl transferase family 2 FYK61_08675 PF08241 Methyltransferase domain FYK61_08710 PF00005 ABC transporter FYK61_08715 PF00005 ABC transporter FYK61_08715 PF00664 ABC transporter transmembrane region FYK61_08720 PF07690 Major Facilitator Superfamily FYK61_08725 PF00296 Luciferase-like monooxygenase FYK61_08740 PF01595 Cyclin M transmembrane N-terminal domain FYK61_08740 PF00571 CBS domain FYK61_08740 PF03471 Transporter associated domain FYK61_08750 PF01384 Phosphate transporter family FYK61_08765 PF00986 DNA gyrase B subunit, carboxyl terminus FYK61_08765 PF01751 Toprim domain FYK61_08765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_08765 PF00204 DNA gyrase B FYK61_08775 PF06418 CTP synthase N-terminus FYK61_08775 PF00117 Glutamine amidotransferase class-I FYK61_08780 PF00793 DAHP synthetase I family FYK61_08790 PF03952 Enolase, N-terminal domain FYK61_08790 PF00113 Enolase, C-terminal TIM barrel domain FYK61_08795 PF04977 Septum formation initiator FYK61_08800 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FYK61_08805 PF02542 YgbB family FYK61_08810 PF01142 tRNA pseudouridine synthase D (TruD) FYK61_08815 PF01713 Smr domain FYK61_08820 PF01975 Survival protein SurE FYK61_08830 PF09335 SNARE associated Golgi protein FYK61_08835 PF01476 LysM domain FYK61_08835 PF01551 Peptidase family M23 FYK61_08840 PF04430 Protein of unknown function (DUF498/DUF598) FYK61_08845 PF01985 CRS1 / YhbY (CRM) domain FYK61_08850 PF01728 FtsJ-like methyltransferase FYK61_08855 PF01434 Peptidase family M41 FYK61_08855 PF17862 AAA+ lid domain FYK61_08855 PF00004 ATPase family associated with various cellular activities (AAA) FYK61_08855 PF06480 FtsH Extracellular FYK61_08860 PF00809 Pterin binding enzyme FYK61_08870 PF17209 Hfq protein FYK61_08875 PF16360 GTP-binding GTPase Middle Region FYK61_08875 PF01926 50S ribosome-binding GTPase FYK61_08875 PF13167 GTP-binding GTPase N-terminal FYK61_08880 PF02464 Competence-damaged protein FYK61_08885 PF03109 ABC1 family FYK61_08890 PF01726 LexA DNA binding domain FYK61_08890 PF00717 Peptidase S24-like FYK61_08895 PF00154 recA bacterial DNA recombination protein FYK61_08900 PF02631 RecX family FYK61_08905 PF02272 DHHA1 domain FYK61_08905 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FYK61_08905 PF01411 tRNA synthetases class II (A) FYK61_08910 PF02599 Global regulator protein family FYK61_08920 PF13426 PAS domain FYK61_08920 PF08447 PAS fold FYK61_08920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_08925 PF17954 Quercetinase C-terminal cupin domain FYK61_08925 PF02678 Pirin FYK61_08930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_08930 PF03466 LysR substrate binding domain FYK61_08955 PF08543 Phosphomethylpyrimidine kinase FYK61_08970 PF13638 PIN domain FYK61_08970 PF02562 PhoH-like protein FYK61_08975 PF00578 AhpC/TSA family FYK61_08990 PF00701 Dihydrodipicolinate synthetase family FYK61_09000 PF00037 4Fe-4S binding domain FYK61_09000 PF11953 Domain of unknown function (DUF3470) FYK61_09005 PF05035 2-keto-3-deoxy-galactonokinase FYK61_09010 PF08450 SMP-30/Gluconolactonase/LRE-like region FYK61_09015 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FYK61_09015 PF13378 Enolase C-terminal domain-like FYK61_09020 PF01081 KDPG and KHG aldolase FYK61_09030 PF03466 LysR substrate binding domain FYK61_09030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_09045 PF00942 Cellulose binding domain FYK61_09045 PF03442 Carbohydrate binding domain X2 FYK61_09055 PF08532 Beta-galactosidase trimerisation domain FYK61_09055 PF02449 Beta-galactosidase FYK61_09055 PF08533 Beta-galactosidase C-terminal domain FYK61_09060 PF17137 Domain of unknown function (DUF5110) FYK61_09060 PF16338 Domain of unknown function (DUF4968) FYK61_09060 PF01055 Glycosyl hydrolases family 31 FYK61_09070 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FYK61_09070 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FYK61_09080 PF00083 Sugar (and other) transporter FYK61_09095 PF01520 N-acetylmuramoyl-L-alanine amidase FYK61_09100 PF02649 Type I GTP cyclohydrolase folE2 FYK61_09110 PF01743 Poly A polymerase head domain FYK61_09110 PF12627 Probable RNA and SrmB- binding site of polymerase A FYK61_09110 PF12626 Polymerase A arginine-rich C-terminus FYK61_09115 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FYK61_09120 PF02548 Ketopantoate hydroxymethyltransferase FYK61_09125 PF02569 Pantoate-beta-alanine ligase FYK61_09130 PF02261 Aspartate decarboxylase FYK61_09135 PF00342 Phosphoglucose isomerase FYK61_09155 PF14310 Fibronectin type III-like domain FYK61_09155 PF00933 Glycosyl hydrolase family 3 N terminal domain FYK61_09155 PF01915 Glycosyl hydrolase family 3 C-terminal domain FYK61_09165 PF00474 Sodium:solute symporter family FYK61_09170 PF00990 Diguanylate cyclase, GGDEF domain FYK61_09170 PF01590 GAF domain FYK61_09170 PF00360 Phytochrome region FYK61_09170 PF00563 EAL domain FYK61_09175 PF02013 Cellulose or protein binding domain FYK61_09175 PF00150 Cellulase (glycosyl hydrolase family 5) FYK61_09180 PF00072 Response regulator receiver domain FYK61_09190 PF04551 GcpE protein FYK61_09195 PF01569 PAP2 superfamily FYK61_09205 PF07690 Major Facilitator Superfamily FYK61_09210 PF01177 Asp/Glu/Hydantoin racemase FYK61_09215 PF00892 EamA-like transporter family FYK61_09220 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FYK61_09220 PF01565 FAD binding domain FYK61_09225 PF01180 Dihydroorotate dehydrogenase FYK61_09245 PF00171 Aldehyde dehydrogenase family FYK61_09280 PF00535 Glycosyl transferase family 2 FYK61_09285 PF14883 Hypothetical glycosyl hydrolase family 13 FYK61_09285 PF01522 Polysaccharide deacetylase FYK61_09295 PF08479 POTRA domain, ShlB-type FYK61_09295 PF17287 POTRA domain FYK61_09295 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB FYK61_09355 PF03073 TspO/MBR family FYK61_09360 PF00742 Homoserine dehydrogenase FYK61_09360 PF03447 Homoserine dehydrogenase, NAD binding domain FYK61_09360 PF00696 Amino acid kinase family FYK61_09360 PF01842 ACT domain FYK61_09360 PF13840 ACT domain FYK61_09365 PF00288 GHMP kinases N terminal domain FYK61_09365 PF08544 GHMP kinases C terminal FYK61_09375 PF14821 Threonine synthase N terminus FYK61_09375 PF00291 Pyridoxal-phosphate dependent enzyme FYK61_09385 PF13545 Crp-like helix-turn-helix domain FYK61_09385 PF00027 Cyclic nucleotide-binding domain FYK61_09390 PF13393 Histidyl-tRNA synthetase FYK61_09390 PF03129 Anticodon binding domain FYK61_09400 PF08029 HisG, C-terminal domain FYK61_09400 PF01634 ATP phosphoribosyltransferase FYK61_09405 PF00815 Histidinol dehydrogenase FYK61_09410 PF00155 Aminotransferase class I and II FYK61_09415 PF00475 Imidazoleglycerol-phosphate dehydratase FYK61_09420 PF00117 Glutamine amidotransferase class-I FYK61_09425 PF00977 Histidine biosynthesis protein FYK61_09430 PF00977 Histidine biosynthesis protein FYK61_09435 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase FYK61_09435 PF01502 Phosphoribosyl-AMP cyclohydrolase FYK61_09455 PF03079 ARD/ARD' family FYK61_09460 PF00596 Class II Aldolase and Adducin N-terminal domain FYK61_09465 PF13520 Amino acid permease FYK61_09470 PF13520 Amino acid permease FYK61_09480 PF01842 ACT domain FYK61_09480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FYK61_09480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FYK61_09485 PF02913 FAD linked oxidases, C-terminal domain FYK61_09485 PF01565 FAD binding domain FYK61_09505 PF09285 Elongation factor P, C-terminal FYK61_09505 PF08207 Elongation factor P (EF-P) KOW-like domain FYK61_09505 PF01132 Elongation factor P (EF-P) OB domain FYK61_09510 PF00106 short chain dehydrogenase FYK61_09515 PF00682 HMGL-like FYK61_09525 PF00378 Enoyl-CoA hydratase/isomerase FYK61_09535 PF02421 Ferrous iron transport protein B FYK61_09535 PF07670 Nucleoside recognition FYK61_09535 PF07664 Ferrous iron transport protein B C terminus FYK61_09550 PF00155 Aminotransferase class I and II FYK61_09555 PF03473 MOSC domain FYK61_09555 PF03475 3-alpha domain FYK61_09560 PF05173 Dihydrodipicolinate reductase, C-terminus FYK61_09560 PF01113 Dihydrodipicolinate reductase, N-terminus FYK61_09565 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FYK61_09565 PF00117 Glutamine amidotransferase class-I FYK61_09575 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FYK61_09575 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FYK61_09575 PF02142 MGS-like domain FYK61_09580 PF01272 Transcription elongation factor, GreA/GreB, C-term FYK61_09580 PF03449 Transcription elongation factor, N-terminal FYK61_09590 PF02272 DHHA1 domain FYK61_09590 PF17768 RecJ OB domain FYK61_09590 PF01368 DHH family FYK61_09650 PF01336 OB-fold nucleic acid binding domain FYK61_09650 PF00152 tRNA synthetases class II (D, K and N) FYK61_09655 PF00072 Response regulator receiver domain FYK61_09660 PF00512 His Kinase A (phospho-acceptor) domain FYK61_09660 PF01627 Hpt domain FYK61_09660 PF00072 Response regulator receiver domain FYK61_09660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_09665 PF00072 Response regulator receiver domain FYK61_09665 PF01627 Hpt domain FYK61_09665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_09665 PF00512 His Kinase A (phospho-acceptor) domain FYK61_09670 PF00378 Enoyl-CoA hydratase/isomerase FYK61_09675 PF13193 AMP-binding enzyme C-terminal domain FYK61_09675 PF00501 AMP-binding enzyme FYK61_09685 PF00694 Aconitase C-terminal domain FYK61_09685 PF00330 Aconitase family (aconitate hydratase) FYK61_09700 PF00330 Aconitase family (aconitate hydratase) FYK61_09700 PF06434 Aconitate hydratase 2 N-terminus FYK61_09700 PF11791 Aconitate B N-terminal domain FYK61_09705 PF00561 alpha/beta hydrolase fold FYK61_09710 PF00563 EAL domain FYK61_09710 PF00990 Diguanylate cyclase, GGDEF domain FYK61_09710 PF03707 Bacterial signalling protein N terminal repeat FYK61_09715 PF00072 Response regulator receiver domain FYK61_09715 PF01339 CheB methylesterase FYK61_09720 PF03975 CheD chemotactic sensory transduction FYK61_09725 PF03705 CheR methyltransferase, all-alpha domain FYK61_09725 PF01739 CheR methyltransferase, SAM binding domain FYK61_09730 PF00672 HAMP domain FYK61_09730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_09730 PF02203 Tar ligand binding domain homologue FYK61_09745 PF01584 CheW-like domain FYK61_09750 PF07317 Flagellar regulator YcgR FYK61_09750 PF07238 PilZ domain FYK61_09755 PF02203 Tar ligand binding domain homologue FYK61_09755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_09755 PF00672 HAMP domain FYK61_09765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_09765 PF02203 Tar ligand binding domain homologue FYK61_09765 PF00672 HAMP domain FYK61_09770 PF02203 Tar ligand binding domain homologue FYK61_09770 PF00672 HAMP domain FYK61_09770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_09775 PF00672 HAMP domain FYK61_09775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_09775 PF02203 Tar ligand binding domain homologue FYK61_09780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_09780 PF02203 Tar ligand binding domain homologue FYK61_09780 PF00672 HAMP domain FYK61_09785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_09785 PF02203 Tar ligand binding domain homologue FYK61_09785 PF00672 HAMP domain FYK61_09790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_09790 PF02203 Tar ligand binding domain homologue FYK61_09790 PF00672 HAMP domain FYK61_09795 PF02203 Tar ligand binding domain homologue FYK61_09795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_09795 PF00672 HAMP domain FYK61_09800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_09800 PF00672 HAMP domain FYK61_09800 PF02203 Tar ligand binding domain homologue FYK61_09810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_09810 PF02203 Tar ligand binding domain homologue FYK61_09810 PF00672 HAMP domain FYK61_09815 PF08269 Cache domain FYK61_09815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_09825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_09825 PF00672 HAMP domain FYK61_09830 PF01584 CheW-like domain FYK61_09830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_09830 PF01627 Hpt domain FYK61_09830 PF02895 Signal transducing histidine kinase, homodimeric domain FYK61_09830 PF09078 CheY binding FYK61_09835 PF00072 Response regulator receiver domain FYK61_09845 PF01584 CheW-like domain FYK61_09850 PF13614 AAA domain FYK61_09855 PF00691 OmpA family FYK61_09855 PF13677 Membrane MotB of proton-channel complex MotA/MotB FYK61_09860 PF01618 MotA/TolQ/ExbB proton channel family FYK61_09915 PF01627 Hpt domain FYK61_09915 PF00072 Response regulator receiver domain FYK61_09915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_09915 PF02895 Signal transducing histidine kinase, homodimeric domain FYK61_09915 PF01584 CheW-like domain FYK61_09920 PF04344 Chemotaxis phosphatase, CheZ FYK61_09925 PF00072 Response regulator receiver domain FYK61_09930 PF04542 Sigma-70 region 2 FYK61_09930 PF04539 Sigma-70 region 3 FYK61_09930 PF04545 Sigma-70, region 4 FYK61_09935 PF10609 NUBPL iron-transfer P-loop NTPase FYK61_09940 PF00448 SRP54-type protein, GTPase domain FYK61_09945 PF00771 FHIPEP family FYK61_09950 PF01312 FlhB HrpN YscU SpaS Family FYK61_09955 PF00563 EAL domain FYK61_09955 PF00990 Diguanylate cyclase, GGDEF domain FYK61_09955 PF03707 Bacterial signalling protein N terminal repeat FYK61_09960 PF00990 Diguanylate cyclase, GGDEF domain FYK61_09965 PF00990 Diguanylate cyclase, GGDEF domain FYK61_09970 PF01311 Bacterial export proteins, family 1 FYK61_09975 PF01313 Bacterial export proteins, family 3 FYK61_09980 PF00813 FliP family FYK61_09985 PF04347 Flagellar biosynthesis protein, FliO FYK61_09990 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FYK61_09995 PF02154 Flagellar motor switch protein FliM FYK61_09995 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FYK61_10015 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FYK61_10015 PF18269 T3SS EscN ATPase C-terminal domain FYK61_10025 PF14841 FliG middle domain FYK61_10025 PF14842 FliG N-terminal domain FYK61_10025 PF01706 FliG C-terminal domain FYK61_10030 PF08345 Flagellar M-ring protein C-terminal FYK61_10030 PF01514 Secretory protein of YscJ/FliF family FYK61_10035 PF02049 Flagellar hook-basal body complex protein FliE FYK61_10040 PF00534 Glycosyl transferases group 1 FYK61_10040 PF00535 Glycosyl transferase family 2 FYK61_10060 PF04230 Polysaccharide pyruvyl transferase FYK61_10095 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FYK61_10095 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FYK61_10105 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FYK61_10110 PF06490 Flagellar regulatory protein FleQ FYK61_10110 PF02954 Bacterial regulatory protein, Fis family FYK61_10110 PF00158 Sigma-54 interaction domain FYK61_10115 PF00072 Response regulator receiver domain FYK61_10115 PF01339 CheB methylesterase FYK61_10120 PF04552 Sigma-54, DNA binding domain FYK61_10120 PF04963 Sigma-54 factor, core binding domain FYK61_10120 PF00309 Sigma-54 factor, Activator interacting domain (AID) FYK61_10125 PF00072 Response regulator receiver domain FYK61_10125 PF00196 Bacterial regulatory proteins, luxR family FYK61_10140 PF02561 Flagellar protein FliS FYK61_10145 PF07195 Flagellar hook-associated protein 2 C-terminus FYK61_10145 PF02465 Flagellar hook-associated protein 2 N-terminus FYK61_10145 PF07196 Flagellin hook IN motif FYK61_10155 PF00700 Bacterial flagellin C-terminal helical region FYK61_10155 PF00669 Bacterial flagellin N-terminal helical region FYK61_10160 PF00700 Bacterial flagellin C-terminal helical region FYK61_10160 PF00669 Bacterial flagellin N-terminal helical region FYK61_10165 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FYK61_10165 PF07196 Flagellin hook IN motif FYK61_10170 PF10135 Rod binding protein FYK61_10170 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase FYK61_10175 PF02119 Flagellar P-ring protein FYK61_10180 PF02107 Flagellar L-ring protein FYK61_10185 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FYK61_10185 PF00460 Flagella basal body rod protein FYK61_10190 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FYK61_10190 PF00460 Flagella basal body rod protein FYK61_10195 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FYK61_10195 PF07559 Flagellar basal body protein FlaE FYK61_10195 PF00460 Flagella basal body rod protein FYK61_10200 PF03963 Flagellar hook capping protein - N-terminal region FYK61_10205 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FYK61_10205 PF00460 Flagella basal body rod protein FYK61_10215 PF00072 Response regulator receiver domain FYK61_10215 PF01584 CheW-like domain FYK61_10235 PF00512 His Kinase A (phospho-acceptor) domain FYK61_10235 PF00989 PAS fold FYK61_10235 PF13188 PAS domain FYK61_10235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_10235 PF13426 PAS domain FYK61_10240 PF00563 EAL domain FYK61_10240 PF00990 Diguanylate cyclase, GGDEF domain FYK61_10240 PF03707 Bacterial signalling protein N terminal repeat FYK61_10245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_10245 PF07730 Histidine kinase FYK61_10250 PF00990 Diguanylate cyclase, GGDEF domain FYK61_10250 PF00563 EAL domain FYK61_10250 PF03707 Bacterial signalling protein N terminal repeat FYK61_10260 PF12729 Four helix bundle sensory module for signal transduction FYK61_10260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_10260 PF00672 HAMP domain FYK61_10265 PF04356 Protein of unknown function (DUF489) FYK61_10275 PF00293 NUDIX domain FYK61_10280 PF02617 ATP-dependent Clp protease adaptor protein ClpS FYK61_10285 PF00004 ATPase family associated with various cellular activities (AAA) FYK61_10285 PF07724 AAA domain (Cdc48 subfamily) FYK61_10285 PF17871 AAA lid domain FYK61_10285 PF02861 Clp amino terminal domain, pathogenicity island component FYK61_10285 PF10431 C-terminal, D2-small domain, of ClpB protein FYK61_10290 PF01176 Translation initiation factor 1A / IF-1 FYK61_10295 PF03588 Leucyl/phenylalanyl-tRNA protein transferase FYK61_10305 PF07992 Pyridine nucleotide-disulphide oxidoreductase FYK61_10310 PF13491 4TM region of DNA translocase FtsK/SpoIIIE FYK61_10310 PF01580 FtsK/SpoIIIE family FYK61_10310 PF09397 Ftsk gamma domain FYK61_10310 PF17854 FtsK alpha domain FYK61_10320 PF03548 Outer membrane lipoprotein carrier protein LolA FYK61_10330 PF16193 AAA C-terminal domain FYK61_10330 PF12002 MgsA AAA+ ATPase C terminal FYK61_10330 PF00004 ATPase family associated with various cellular activities (AAA) FYK61_10335 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FYK61_10340 PF02803 Thiolase, C-terminal domain FYK61_10340 PF00108 Thiolase, N-terminal domain FYK61_10345 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FYK61_10345 PF00378 Enoyl-CoA hydratase/isomerase FYK61_10345 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FYK61_10355 PF00334 Nucleoside diphosphate kinase FYK61_10360 PF04055 Radical SAM superfamily FYK61_10370 PF13464 Domain of unknown function (DUF4115) FYK61_10380 PF13360 PQQ-like domain FYK61_10380 PF01011 PQQ enzyme repeat FYK61_10385 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FYK61_10385 PF01926 50S ribosome-binding GTPase FYK61_10390 PF03453 MoeA N-terminal region (domain I and II) FYK61_10390 PF03454 MoeA C-terminal region (domain IV) FYK61_10390 PF00994 Probable molybdopterin binding domain FYK61_10395 PF00899 ThiF family FYK61_10420 PF08240 Alcohol dehydrogenase GroES-like domain FYK61_10420 PF13823 Alcohol dehydrogenase GroES-associated FYK61_10420 PF00107 Zinc-binding dehydrogenase FYK61_10440 PF00994 Probable molybdopterin binding domain FYK61_10440 PF03454 MoeA C-terminal region (domain IV) FYK61_10440 PF03453 MoeA N-terminal region (domain I and II) FYK61_10445 PF12804 MobA-like NTP transferase domain FYK61_10470 PF00561 alpha/beta hydrolase fold FYK61_10475 PF01566 Natural resistance-associated macrophage protein FYK61_10480 PF01325 Iron dependent repressor, N-terminal DNA binding domain FYK61_10480 PF02742 Iron dependent repressor, metal binding and dimerisation domain FYK61_10485 PF14437 MafB19-like deaminase FYK61_10490 PF00929 Exonuclease FYK61_10495 PF05552 Conserved TM helix FYK61_10495 PF00924 Mechanosensitive ion channel FYK61_10500 PF02896 PEP-utilising enzyme, TIM barrel domain FYK61_10500 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain FYK61_10500 PF00391 PEP-utilising enzyme, mobile domain FYK61_10505 PF03618 Kinase/pyrophosphorylase FYK61_10525 PF01066 CDP-alcohol phosphatidyltransferase FYK61_10535 PF00561 alpha/beta hydrolase fold FYK61_10550 PF01266 FAD dependent oxidoreductase FYK61_10550 PF00355 Rieske [2Fe-2S] domain FYK61_10560 PF17674 HHH domain FYK61_10560 PF16921 Tex protein YqgF-like domain FYK61_10560 PF00575 S1 RNA binding domain FYK61_10560 PF09371 Tex-like protein N-terminal domain FYK61_10565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_10565 PF00512 His Kinase A (phospho-acceptor) domain FYK61_10565 PF00072 Response regulator receiver domain FYK61_10565 PF09308 LuxQ, periplasmic FYK61_10605 PF00034 Cytochrome c FYK61_10615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FYK61_10620 PF00873 AcrB/AcrD/AcrF family FYK61_10625 PF00873 AcrB/AcrD/AcrF family FYK61_10630 PF01081 KDPG and KHG aldolase FYK61_10635 PF00920 Dehydratase family FYK61_10640 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase FYK61_10645 PF02685 Glucokinase FYK61_10650 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain FYK61_10650 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain FYK61_10655 PF17912 MalK OB fold domain FYK61_10655 PF00005 ABC transporter FYK61_10660 PF01571 Aminomethyltransferase folate-binding domain FYK61_10670 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FYK61_10675 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FYK61_10680 PF02910 Fumarate reductase flavoprotein C-term FYK61_10680 PF00890 FAD binding domain FYK61_10690 PF13085 2Fe-2S iron-sulfur cluster binding domain FYK61_10695 PF03937 Flavinator of succinate dehydrogenase FYK61_10705 PF02687 FtsX-like permease family FYK61_10705 PF12704 MacB-like periplasmic core domain FYK61_10710 PF00005 ABC transporter FYK61_10720 PF00753 Metallo-beta-lactamase superfamily FYK61_10720 PF03772 Competence protein FYK61_10725 PF01618 MotA/TolQ/ExbB proton channel family FYK61_10730 PF02472 Biopolymer transport protein ExbD/TolR FYK61_10735 PF00005 ABC transporter FYK61_10735 PF00664 ABC transporter transmembrane region FYK61_10740 PF02606 Tetraacyldisaccharide-1-P 4'-kinase FYK61_10745 PF02348 Cytidylyltransferase FYK61_10750 PF01451 Low molecular weight phosphotyrosine protein phosphatase FYK61_10760 PF08459 UvrC Helix-hairpin-helix N-terminal FYK61_10760 PF02151 UvrB/uvrC motif FYK61_10760 PF01541 GIY-YIG catalytic domain FYK61_10765 PF01066 CDP-alcohol phosphatidyltransferase FYK61_10785 PF00589 Phage integrase family FYK61_10785 PF13356 Arm DNA-binding domain FYK61_10790 PF03466 LysR substrate binding domain FYK61_10790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_10805 PF13460 NAD(P)H-binding FYK61_10815 PF12706 Beta-lactamase superfamily domain FYK61_10825 PF01381 Helix-turn-helix FYK61_10830 PF03466 LysR substrate binding domain FYK61_10830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_10845 PF01638 HxlR-like helix-turn-helix FYK61_10855 PF00873 AcrB/AcrD/AcrF family FYK61_10860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FYK61_10865 PF12706 Beta-lactamase superfamily domain FYK61_10880 PF07690 Major Facilitator Superfamily FYK61_10885 PF02129 X-Pro dipeptidyl-peptidase (S15 family) FYK61_10890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_10890 PF03466 LysR substrate binding domain FYK61_10905 PF13478 XdhC Rossmann domain FYK61_10905 PF02625 XdhC and CoxI family FYK61_10910 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase FYK61_10910 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FYK61_10915 PF00941 FAD binding domain in molybdopterin dehydrogenase FYK61_10915 PF03450 CO dehydrogenase flavoprotein C-terminal domain FYK61_10920 PF01799 [2Fe-2S] binding domain FYK61_10920 PF00111 2Fe-2S iron-sulfur cluster binding domain FYK61_10925 PF03466 LysR substrate binding domain FYK61_10925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_10930 PF07995 Glucose / Sorbosone dehydrogenase FYK61_10940 PF00795 Carbon-nitrogen hydrolase FYK61_10945 PF05853 beta-keto acid cleavage enzyme FYK61_10950 PF03401 Tripartite tricarboxylate transporter family receptor FYK61_11005 PF04002 RadC-like JAB domain FYK61_11175 PF07690 Major Facilitator Superfamily FYK61_11195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_11195 PF03466 LysR substrate binding domain FYK61_11230 PF01131 DNA topoisomerase FYK61_11230 PF01751 Toprim domain FYK61_11235 PF00436 Single-strand binding protein family FYK61_11270 PF13614 AAA domain FYK61_11290 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FYK61_11290 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FYK61_11290 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FYK61_11300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FYK61_11310 PF17773 UPF0176 acylphosphatase like domain FYK61_11310 PF00581 Rhodanese-like domain FYK61_11315 PF00072 Response regulator receiver domain FYK61_11315 PF00196 Bacterial regulatory proteins, luxR family FYK61_11320 PF00575 S1 RNA binding domain FYK61_11320 PF12111 Polyribonucleotide phosphorylase C terminal FYK61_11320 PF10150 Ribonuclease E/G family FYK61_11325 PF01479 S4 domain FYK61_11325 PF00849 RNA pseudouridylate synthase FYK61_11330 PF11737 Protein of unknown function (DUF3300) FYK61_11335 PF02535 ZIP Zinc transporter FYK61_11345 PF01329 Pterin 4 alpha carbinolamine dehydratase FYK61_11350 PF01106 NifU-like domain FYK61_11400 PF12697 Alpha/beta hydrolase family FYK61_11400 PF08241 Methyltransferase domain FYK61_11420 PF01526 Tn3 transposase DDE domain FYK61_11420 PF13700 Domain of unknown function (DUF4158) FYK61_11450 PF00106 short chain dehydrogenase FYK61_11535 PF02129 X-Pro dipeptidyl-peptidase (S15 family) FYK61_11540 PF07690 Major Facilitator Superfamily FYK61_11560 PF00149 Calcineurin-like phosphoesterase FYK61_11565 PF08240 Alcohol dehydrogenase GroES-like domain FYK61_11565 PF00107 Zinc-binding dehydrogenase FYK61_11570 PF00248 Aldo/keto reductase family FYK61_11580 PF03466 LysR substrate binding domain FYK61_11580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_11590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FYK61_11600 PF01804 Penicillin amidase FYK61_11620 PF00248 Aldo/keto reductase family FYK61_11635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_11635 PF03466 LysR substrate binding domain FYK61_11665 PF13700 Domain of unknown function (DUF4158) FYK61_11665 PF01526 Tn3 transposase DDE domain FYK61_11680 PF13581 Histidine kinase-like ATPase domain FYK61_11680 PF07536 HWE histidine kinase FYK61_11680 PF13426 PAS domain FYK61_11685 PF01494 FAD binding domain FYK61_11690 PF09335 SNARE associated Golgi protein FYK61_11700 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FYK61_11705 PF07995 Glucose / Sorbosone dehydrogenase FYK61_11715 PF00144 Beta-lactamase FYK61_11720 PF04397 LytTr DNA-binding domain FYK61_11720 PF00072 Response regulator receiver domain FYK61_11725 PF06580 Histidine kinase FYK61_11725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_11725 PF07694 5TMR of 5TMR-LYT FYK61_11725 PF13492 GAF domain FYK61_11735 PF03797 Autotransporter beta-domain FYK61_11735 PF00082 Subtilase family FYK61_11740 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FYK61_11745 PF00873 AcrB/AcrD/AcrF family FYK61_11755 PF08448 PAS fold FYK61_11755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_11755 PF00512 His Kinase A (phospho-acceptor) domain FYK61_11755 PF13426 PAS domain FYK61_11755 PF00072 Response regulator receiver domain FYK61_11760 PF00196 Bacterial regulatory proteins, luxR family FYK61_11760 PF00072 Response regulator receiver domain FYK61_11765 PF12951 Passenger-associated-transport-repeat FYK61_11770 PF00563 EAL domain FYK61_11770 PF00990 Diguanylate cyclase, GGDEF domain FYK61_11770 PF08447 PAS fold FYK61_11770 PF08448 PAS fold FYK61_11790 PF05974 Domain of unknown function (DUF892) FYK61_11810 PF14824 Sirohaem biosynthesis protein central FYK61_11810 PF10414 Sirohaem synthase dimerisation region FYK61_11810 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FYK61_11825 PF05977 Transmembrane secretion effector FYK61_11830 PF07969 Amidohydrolase family FYK61_11840 PF00857 Isochorismatase family FYK61_11845 PF12833 Helix-turn-helix domain FYK61_11855 PF00072 Response regulator receiver domain FYK61_11855 PF00196 Bacterial regulatory proteins, luxR family FYK61_11875 PF03466 LysR substrate binding domain FYK61_11875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_11880 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FYK61_11880 PF00361 Proton-conducting membrane transporter FYK61_11880 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus FYK61_11885 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) FYK61_11890 PF02540 NAD synthase FYK61_11890 PF00117 Glutamine amidotransferase class-I FYK61_11890 PF00958 GMP synthase C terminal domain FYK61_11895 PF00571 CBS domain FYK61_11895 PF00478 IMP dehydrogenase / GMP reductase domain FYK61_11900 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FYK61_11900 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FYK61_11910 PF00999 Sodium/hydrogen exchanger family FYK61_11910 PF02254 TrkA-N domain FYK61_11915 PF00483 Nucleotidyl transferase FYK61_11920 PF02719 Polysaccharide biosynthesis protein FYK61_11925 PF00953 Glycosyl transferase family 4 FYK61_11930 PF18073 Rubredoxin metal binding domain FYK61_11940 PF00216 Bacterial DNA-binding protein FYK61_11945 PF00575 S1 RNA binding domain FYK61_11950 PF02224 Cytidylate kinase FYK61_11955 PF00444 Ribosomal protein L36 FYK61_11965 PF04371 Porphyromonas-type peptidyl-arginine deiminase FYK61_11970 PF00795 Carbon-nitrogen hydrolase FYK61_11995 PF00528 Binding-protein-dependent transport system inner membrane component FYK61_12000 PF00528 Binding-protein-dependent transport system inner membrane component FYK61_12020 PF00356 Bacterial regulatory proteins, lacI family FYK61_12030 PF03795 YCII-related domain FYK61_12035 PF02616 Segregation and condensation protein ScpA FYK61_12040 PF04079 Segregation and condensation complex subunit ScpB FYK61_12045 PF00849 RNA pseudouridylate synthase FYK61_12045 PF01479 S4 domain FYK61_12060 PF00795 Carbon-nitrogen hydrolase FYK61_12065 PF00155 Aminotransferase class I and II FYK61_12070 PF00005 ABC transporter FYK61_12075 PF03379 CcmB protein FYK61_12080 PF01578 Cytochrome C assembly protein FYK61_12090 PF03100 CcmE FYK61_12095 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal FYK61_12095 PF01578 Cytochrome C assembly protein FYK61_12100 PF08534 Redoxin FYK61_12105 PF03918 Cytochrome C biogenesis protein FYK61_12115 PF00561 alpha/beta hydrolase fold FYK61_12120 PF00313 'Cold-shock' DNA-binding domain FYK61_12125 PF00005 ABC transporter FYK61_12125 PF00664 ABC transporter transmembrane region FYK61_12130 PF00664 ABC transporter transmembrane region FYK61_12130 PF00005 ABC transporter FYK61_12135 PF01654 Cytochrome bd terminal oxidase subunit I FYK61_12140 PF02322 Cytochrome bd terminal oxidase subunit II FYK61_12160 PF02129 X-Pro dipeptidyl-peptidase (S15 family) FYK61_12160 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain FYK61_12170 PF00171 Aldehyde dehydrogenase family FYK61_12175 PF00696 Amino acid kinase family FYK61_12175 PF01472 PUA domain FYK61_12185 PF00206 Lyase FYK61_12190 PF01118 Semialdehyde dehydrogenase, NAD binding domain FYK61_12200 PF00696 Amino acid kinase family FYK61_12200 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase FYK61_12205 PF07687 Peptidase dimerisation domain FYK61_12205 PF01546 Peptidase family M20/M25/M40 FYK61_12215 PF00764 Arginosuccinate synthase FYK61_12220 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FYK61_12220 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FYK61_12230 PF09190 DALR domain FYK61_12230 PF01406 tRNA synthetases class I (C) catalytic domain FYK61_12235 PF02657 Fe-S metabolism associated domain FYK61_12245 PF01258 Prokaryotic dksA/traR C4-type zinc finger FYK61_12250 PF01809 Putative membrane protein insertion efficiency factor FYK61_12255 PF01979 Amidohydrolase family FYK61_12260 PF08460 Bacterial SH3 domain FYK61_12260 PF01551 Peptidase family M23 FYK61_12270 PF06751 Ethanolamine ammonia lyase large subunit (EutB) FYK61_12275 PF05985 Ethanolamine ammonia-lyase light chain (EutC) FYK61_12285 PF00753 Metallo-beta-lactamase superfamily FYK61_12310 PF00295 Glycosyl hydrolases family 28 FYK61_12320 PF13419 Haloacid dehalogenase-like hydrolase FYK61_12330 PF01979 Amidohydrolase family FYK61_12340 PF01132 Elongation factor P (EF-P) OB domain FYK61_12340 PF09285 Elongation factor P, C-terminal FYK61_12340 PF08207 Elongation factor P (EF-P) KOW-like domain FYK61_12345 PF04055 Radical SAM superfamily FYK61_12350 PF03707 Bacterial signalling protein N terminal repeat FYK61_12350 PF13188 PAS domain FYK61_12350 PF00990 Diguanylate cyclase, GGDEF domain FYK61_12350 PF00563 EAL domain FYK61_12360 PF00588 SpoU rRNA Methylase family FYK61_12365 PF00459 Inositol monophosphatase family FYK61_12370 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FYK61_12370 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FYK61_12375 PF00545 ribonuclease FYK61_12385 PF16326 ABC transporter C-terminal domain FYK61_12385 PF00005 ABC transporter FYK61_12385 PF12848 ABC transporter FYK61_12390 PF03880 DbpA RNA binding domain FYK61_12390 PF00270 DEAD/DEAH box helicase FYK61_12390 PF00271 Helicase conserved C-terminal domain FYK61_12395 PF00156 Phosphoribosyl transferase domain FYK61_12400 PF02696 Uncharacterized ACR, YdiU/UPF0061 family FYK61_12405 PF07859 alpha/beta hydrolase fold FYK61_12410 PF14497 Glutathione S-transferase, C-terminal domain FYK61_12410 PF02798 Glutathione S-transferase, N-terminal domain FYK61_12415 PF00313 'Cold-shock' DNA-binding domain FYK61_12420 PF07152 YaeQ protein FYK61_12430 PF00563 EAL domain FYK61_12430 PF00072 Response regulator receiver domain FYK61_12430 PF00990 Diguanylate cyclase, GGDEF domain FYK61_12435 PF01435 Peptidase family M48 FYK61_12440 PF00749 tRNA synthetases class I (E and Q), catalytic domain FYK61_12445 PF00106 short chain dehydrogenase FYK61_12450 PF07879 PHB/PHA accumulation regulator DNA-binding domain FYK61_12450 PF05233 PHB accumulation regulatory domain FYK61_12470 PF08676 MutL C terminal dimerisation domain FYK61_12470 PF01119 DNA mismatch repair protein, C-terminal domain FYK61_12475 PF01520 N-acetylmuramoyl-L-alanine amidase FYK61_12475 PF11741 AMIN domain FYK61_12480 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FYK61_12485 PF03853 YjeF-related protein N-terminus FYK61_12485 PF01256 Carbohydrate kinase FYK61_12490 PF08331 Domain of unknown function (DUF1730) FYK61_12495 PF13742 OB-fold nucleic acid binding domain FYK61_12495 PF02601 Exonuclease VII, large subunit FYK61_12505 PF03781 Sulfatase-modifying factor enzyme 1 FYK61_12515 PF01612 3'-5' exonuclease FYK61_12515 PF00570 HRDC domain FYK61_12520 PF04679 ATP dependent DNA ligase C terminal region FYK61_12520 PF01068 ATP dependent DNA ligase domain FYK61_12520 PF13298 DNA polymerase Ligase (LigD) FYK61_12545 PF01584 CheW-like domain FYK61_12550 PF00672 HAMP domain FYK61_12550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_12550 PF02743 Cache domain FYK61_12555 PF02245 Methylpurine-DNA glycosylase (MPG) FYK61_12560 PF00270 DEAD/DEAH box helicase FYK61_12560 PF08494 DEAD/H associated FYK61_12560 PF00271 Helicase conserved C-terminal domain FYK61_12580 PF04386 Stringent starvation protein B FYK61_12585 PF00043 Glutathione S-transferase, C-terminal domain FYK61_12585 PF02798 Glutathione S-transferase, N-terminal domain FYK61_12590 PF02167 Cytochrome C1 family FYK61_12595 PF00033 Cytochrome b/b6/petB FYK61_12595 PF00032 Cytochrome b(C-terminal)/b6/petD FYK61_12600 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal FYK61_12600 PF00355 Rieske [2Fe-2S] domain FYK61_12605 PF01464 Transglycosylase SLT domain FYK61_12620 PF04055 Radical SAM superfamily FYK61_12620 PF01938 TRAM domain FYK61_12620 PF00919 Uncharacterized protein family UPF0004 FYK61_12625 PF02562 PhoH-like protein FYK61_12635 PF02130 Uncharacterized protein family UPF0054 FYK61_12645 PF00571 CBS domain FYK61_12645 PF03471 Transporter associated domain FYK61_12660 PF00171 Aldehyde dehydrogenase family FYK61_12665 PF00528 Binding-protein-dependent transport system inner membrane component FYK61_12670 PF00528 Binding-protein-dependent transport system inner membrane component FYK61_12680 PF00005 ABC transporter FYK61_12680 PF08402 TOBE domain FYK61_12685 PF02321 Outer membrane efflux protein FYK61_12690 PF07690 Major Facilitator Superfamily FYK61_12695 PF13533 Biotin-lipoyl like FYK61_12700 PF13416 Bacterial extracellular solute-binding protein FYK61_12705 PF00202 Aminotransferase class-III FYK61_12710 PF00120 Glutamine synthetase, catalytic domain FYK61_12715 PF07722 Peptidase C26 FYK61_12720 PF00120 Glutamine synthetase, catalytic domain FYK61_12725 PF01266 FAD dependent oxidoreductase FYK61_12730 PF00990 Diguanylate cyclase, GGDEF domain FYK61_12730 PF00072 Response regulator receiver domain FYK61_12735 PF01814 Hemerythrin HHE cation binding domain FYK61_12740 PF00083 Sugar (and other) transporter FYK61_12740 PF07690 Major Facilitator Superfamily FYK61_12750 PF00384 Molybdopterin oxidoreductase FYK61_12755 PF02634 FdhD/NarQ family FYK61_12760 PF07690 Major Facilitator Superfamily FYK61_12770 PF00202 Aminotransferase class-III FYK61_12780 PF04286 Protein of unknown function (DUF445) FYK61_12785 PF00072 Response regulator receiver domain FYK61_12785 PF00512 His Kinase A (phospho-acceptor) domain FYK61_12785 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FYK61_12785 PF01627 Hpt domain FYK61_12785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_12785 PF00672 HAMP domain FYK61_12790 PF00072 Response regulator receiver domain FYK61_12800 PF07690 Major Facilitator Superfamily FYK61_12830 PF05088 Bacterial NAD-glutamate dehydrogenase FYK61_12840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FYK61_12840 PF00529 HlyD membrane-fusion protein of T1SS FYK61_12845 PF00873 AcrB/AcrD/AcrF family FYK61_12850 PF00356 Bacterial regulatory proteins, lacI family FYK61_12855 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FYK61_12855 PF00381 PTS HPr component phosphorylation site FYK61_12855 PF05524 PEP-utilising enzyme, N-terminal FYK61_12855 PF02896 PEP-utilising enzyme, TIM barrel domain FYK61_12855 PF00391 PEP-utilising enzyme, mobile domain FYK61_12860 PF00294 pfkB family carbohydrate kinase FYK61_12865 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FYK61_12885 PF02355 Protein export membrane protein FYK61_12885 PF07549 SecD/SecF GG Motif FYK61_12890 PF13721 SecD export protein N-terminal TM region FYK61_12890 PF07549 SecD/SecF GG Motif FYK61_12890 PF02355 Protein export membrane protein FYK61_12895 PF02699 Preprotein translocase subunit FYK61_12900 PF01702 Queuine tRNA-ribosyltransferase FYK61_12905 PF02547 Queuosine biosynthesis protein FYK61_12960 PF00759 Glycosyl hydrolase family 9 FYK61_12960 PF02927 Cellulase N-terminal ig-like domain FYK61_12970 PF00037 4Fe-4S binding domain FYK61_12980 PF01467 Cytidylyltransferase-like FYK61_12990 PF00183 Hsp90 protein FYK61_12990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_13030 PF07715 TonB-dependent Receptor Plug Domain FYK61_13030 PF00593 TonB dependent receptor FYK61_13040 PF04616 Glycosyl hydrolases family 43 FYK61_13045 PF07532 Bacterial Ig-like domain (group 4) FYK61_13050 PF07715 TonB-dependent Receptor Plug Domain FYK61_13050 PF00593 TonB dependent receptor FYK61_13065 PF00082 Subtilase family FYK61_13065 PF09286 Pro-kumamolisin, activation domain FYK61_13095 PF13520 Amino acid permease FYK61_13110 PF01321 Creatinase/Prolidase N-terminal domain FYK61_13110 PF00557 Metallopeptidase family M24 FYK61_13115 PF00171 Aldehyde dehydrogenase family FYK61_13120 PF00701 Dihydrodipicolinate synthetase family FYK61_13125 PF07992 Pyridine nucleotide-disulphide oxidoreductase FYK61_13125 PF04324 BFD-like [2Fe-2S] binding domain FYK61_13135 PF01266 FAD dependent oxidoreductase FYK61_13140 PF05544 Proline racemase FYK61_13150 PF02881 SRP54-type protein, helical bundle domain FYK61_13150 PF00448 SRP54-type protein, GTPase domain FYK61_13155 PF10576 Iron-sulfur binding domain of endonuclease III FYK61_13155 PF00633 Helix-hairpin-helix motif FYK61_13155 PF14815 NUDIX domain FYK61_13155 PF00730 HhH-GPD superfamily base excision DNA repair protein FYK61_13160 PF04362 Bacterial Fe(2+) trafficking FYK61_13165 PF00072 Response regulator receiver domain FYK61_13165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_13165 PF13426 PAS domain FYK61_13195 PF08212 Lipocalin-like domain FYK61_13205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FYK61_13205 PF02770 Acyl-CoA dehydrogenase, middle domain FYK61_13205 PF12806 Acetyl-CoA dehydrogenase C-terminal like FYK61_13205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FYK61_13215 PF02779 Transketolase, pyrimidine binding domain FYK61_13215 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FYK61_13215 PF02780 Transketolase, C-terminal domain FYK61_13235 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family FYK61_13240 PF16123 Hydroxyacylglutathione hydrolase C-terminus FYK61_13240 PF00753 Metallo-beta-lactamase superfamily FYK61_13245 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FYK61_13245 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FYK61_13260 PF03808 Glycosyl transferase WecB/TagA/CpsF family FYK61_13275 PF14667 Polysaccharide biosynthesis C-terminal domain FYK61_13285 PF13439 Glycosyltransferase Family 4 FYK61_13285 PF00534 Glycosyl transferases group 1 FYK61_13305 PF02397 Bacterial sugar transferase FYK61_13325 PF13411 MerR HTH family regulatory protein FYK61_13330 PF00216 Bacterial DNA-binding protein FYK61_13335 PF01588 Putative tRNA binding domain FYK61_13335 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FYK61_13335 PF03147 Ferredoxin-fold anticodon binding domain FYK61_13335 PF03484 tRNA synthetase B5 domain FYK61_13335 PF03483 B3/4 domain FYK61_13340 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FYK61_13340 PF01409 tRNA synthetases class II core domain (F) FYK61_13345 PF00453 Ribosomal protein L20 FYK61_13350 PF01632 Ribosomal protein L35 FYK61_13355 PF00707 Translation initiation factor IF-3, C-terminal domain FYK61_13355 PF05198 Translation initiation factor IF-3, N-terminal domain FYK61_13360 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FYK61_13360 PF02824 TGS domain FYK61_13360 PF03129 Anticodon binding domain FYK61_13360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FYK61_13365 PF00356 Bacterial regulatory proteins, lacI family FYK61_13370 PF00686 Starch binding domain FYK61_13370 PF00128 Alpha amylase, catalytic domain FYK61_13375 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 FYK61_13385 PF10566 Glycoside hydrolase 97 FYK61_13385 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation FYK61_13385 PF14508 Glycosyl-hydrolase 97 N-terminal FYK61_13400 PF00128 Alpha amylase, catalytic domain FYK61_13475 PF03135 CagE, TrbE, VirB family, component of type IV transporter system FYK61_13480 PF05101 Type IV secretory pathway, VirB3-like protein FYK61_13490 PF01464 Transglycosylase SLT domain FYK61_13495 PF00437 Type II/IV secretion system protein FYK61_13500 PF03743 Bacterial conjugation TrbI-like protein FYK61_13520 PF02534 Type IV secretory system Conjugative DNA transfer FYK61_13535 PF12344 Ultra-violet resistance protein B FYK61_13535 PF00271 Helicase conserved C-terminal domain FYK61_13535 PF04851 Type III restriction enzyme, res subunit FYK61_13535 PF02151 UvrB/uvrC motif FYK61_13535 PF17757 UvrB interaction domain FYK61_13540 PF07963 Prokaryotic N-terminal methylation motif FYK61_13540 PF00114 Pilin (bacterial filament) FYK61_13555 PF05567 Neisseria PilC beta-propeller domain FYK61_13575 PF07963 Prokaryotic N-terminal methylation motif FYK61_13575 PF00114 Pilin (bacterial filament) FYK61_13580 PF03641 Possible lysine decarboxylase FYK61_13580 PF11892 Domain of unknown function (DUF3412) FYK61_13580 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases FYK61_13585 PF00593 TonB dependent receptor FYK61_13590 PF01914 MarC family integral membrane protein FYK61_13600 PF00462 Glutaredoxin FYK61_13605 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FYK61_13605 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FYK61_13610 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain FYK61_13610 PF02222 ATP-grasp domain FYK61_13615 PF00731 AIR carboxylase FYK61_13625 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FYK61_13625 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FYK61_13635 PF00013 KH domain FYK61_13635 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FYK61_13635 PF00575 S1 RNA binding domain FYK61_13635 PF03725 3' exoribonuclease family, domain 2 FYK61_13635 PF01138 3' exoribonuclease family, domain 1 FYK61_13640 PF00312 Ribosomal protein S15 FYK61_13645 PF09157 Pseudouridine synthase II TruB, C-terminal FYK61_13645 PF16198 tRNA pseudouridylate synthase B C-terminal domain FYK61_13645 PF01509 TruB family pseudouridylate synthase (N terminal domain) FYK61_13650 PF02033 Ribosome-binding factor A FYK61_13655 PF08364 Bacterial translation initiation factor IF-2 associated region FYK61_13655 PF04760 Translation initiation factor IF-2, N-terminal region FYK61_13655 PF11987 Translation-initiation factor 2 FYK61_13655 PF00009 Elongation factor Tu GTP binding domain FYK61_13660 PF13184 NusA-like KH domain FYK61_13660 PF08529 NusA N-terminal domain FYK61_13660 PF00575 S1 RNA binding domain FYK61_13665 PF02576 RimP N-terminal domain FYK61_13665 PF17384 RimP C-terminal SH3 domain FYK61_13675 PF00361 Proton-conducting membrane transporter FYK61_13680 PF00361 Proton-conducting membrane transporter FYK61_13680 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus FYK61_13685 PF00361 Proton-conducting membrane transporter FYK61_13685 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FYK61_13690 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FYK61_13695 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 FYK61_13700 PF12838 4Fe-4S dicluster domain FYK61_13705 PF00146 NADH dehydrogenase FYK61_13710 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal FYK61_13710 PF00384 Molybdopterin oxidoreductase FYK61_13710 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FYK61_13715 PF10531 SLBB domain FYK61_13715 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FYK61_13715 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FYK61_13725 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit FYK61_13730 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit FYK61_13735 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FYK61_13740 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 FYK61_13755 PF00121 Triosephosphate isomerase FYK61_13760 PF00106 short chain dehydrogenase FYK61_13775 PF00990 Diguanylate cyclase, GGDEF domain FYK61_13775 PF00563 EAL domain FYK61_13775 PF03707 Bacterial signalling protein N terminal repeat FYK61_13790 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FYK61_13790 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FYK61_13790 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FYK61_13790 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FYK61_13795 PF01039 Carboxyl transferase domain FYK61_13795 PF17848 Acetyl-coA carboxylase zinc finger domain FYK61_13800 PF00290 Tryptophan synthase alpha chain FYK61_13810 PF00291 Pyridoxal-phosphate dependent enzyme FYK61_13815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_13815 PF03466 LysR substrate binding domain FYK61_13820 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FYK61_13825 PF01416 tRNA pseudouridine synthase FYK61_13840 PF02774 Semialdehyde dehydrogenase, dimerisation domain FYK61_13840 PF01118 Semialdehyde dehydrogenase, NAD binding domain FYK61_13845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FYK61_13845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FYK61_13850 PF01264 Chorismate synthase FYK61_13855 PF05175 Methyltransferase small domain FYK61_13860 PF02630 SCO1/SenC FYK61_13865 PF02666 Phosphatidylserine decarboxylase FYK61_13875 PF05872 Bacterial protein of unknown function (DUF853) FYK61_13880 PF00293 NUDIX domain FYK61_13900 PF03449 Transcription elongation factor, N-terminal FYK61_13900 PF01272 Transcription elongation factor, GreA/GreB, C-term FYK61_13905 PF18693 TRAM domain FYK61_13905 PF04055 Radical SAM superfamily FYK61_13905 PF00919 Uncharacterized protein family UPF0004 FYK61_13910 PF01738 Dienelactone hydrolase family FYK61_13930 PF00692 dUTPase FYK61_13935 PF10609 NUBPL iron-transfer P-loop NTPase FYK61_13940 PF07715 TonB-dependent Receptor Plug Domain FYK61_13940 PF00593 TonB dependent receptor FYK61_13955 PF01431 Peptidase family M13 FYK61_13955 PF05649 Peptidase family M13 FYK61_13960 PF05649 Peptidase family M13 FYK61_13960 PF01431 Peptidase family M13 FYK61_13980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FYK61_13980 PF07992 Pyridine nucleotide-disulphide oxidoreductase FYK61_13985 PF01266 FAD dependent oxidoreductase FYK61_13990 PF04235 Protein of unknown function (DUF418) FYK61_13995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FYK61_14000 PF00877 NlpC/P60 family FYK61_14005 PF00877 NlpC/P60 family FYK61_14020 PF00375 Sodium:dicarboxylate symporter family FYK61_14025 PF00245 Alkaline phosphatase FYK61_14030 PF01171 PP-loop family FYK61_14030 PF09179 TilS substrate binding domain FYK61_14030 PF11734 TilS substrate C-terminal domain FYK61_14035 PF02609 Exonuclease VII small subunit FYK61_14040 PF00348 Polyprenyl synthetase FYK61_14045 PF14521 Lysine-specific metallo-endopeptidase FYK61_14055 PF01523 Putative modulator of DNA gyrase FYK61_14060 PF04751 Protein of unknown function (DUF615) FYK61_14065 PF01523 Putative modulator of DNA gyrase FYK61_14075 PF13116 Protein of unknown function FYK61_14075 PF13502 AsmA-like C-terminal region FYK61_14080 PF10150 Ribonuclease E/G family FYK61_14080 PF00575 S1 RNA binding domain FYK61_14085 PF02545 Maf-like protein FYK61_14090 PF04402 Protein of unknown function (DUF541) FYK61_14105 PF02590 Predicted SPOUT methyltransferase FYK61_14120 PF01467 Cytidylyltransferase-like FYK61_14135 PF00133 tRNA synthetases class I (I, L, M and V) FYK61_14135 PF13603 Leucyl-tRNA synthetase, Domain 2 FYK61_14135 PF08264 Anticodon-binding domain of tRNA FYK61_14145 PF00085 Thioredoxin FYK61_14190 PF04070 Domain of unknown function (DUF378) FYK61_14195 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FYK61_14205 PF03466 LysR substrate binding domain FYK61_14205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_14235 PF00664 ABC transporter transmembrane region FYK61_14235 PF00005 ABC transporter FYK61_14245 PF00873 AcrB/AcrD/AcrF family FYK61_14260 PF02321 Outer membrane efflux protein FYK61_14265 PF00072 Response regulator receiver domain FYK61_14265 PF00486 Transcriptional regulatory protein, C terminal FYK61_14270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_14270 PF00512 His Kinase A (phospho-acceptor) domain FYK61_14270 PF00672 HAMP domain FYK61_14275 PF00999 Sodium/hydrogen exchanger family FYK61_14280 PF00144 Beta-lactamase FYK61_14285 PF03737 Aldolase/RraA FYK61_14300 PF00990 Diguanylate cyclase, GGDEF domain FYK61_14305 PF00849 RNA pseudouridylate synthase FYK61_14305 PF01479 S4 domain FYK61_14310 PF00990 Diguanylate cyclase, GGDEF domain FYK61_14310 PF08448 PAS fold FYK61_14310 PF00563 EAL domain FYK61_14315 PF00271 Helicase conserved C-terminal domain FYK61_14315 PF03880 DbpA RNA binding domain FYK61_14315 PF00270 DEAD/DEAH box helicase FYK61_14320 PF08281 Sigma-70, region 4 FYK61_14320 PF04542 Sigma-70 region 2 FYK61_14365 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FYK61_14365 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FYK61_14375 PF00654 Voltage gated chloride channel FYK61_14380 PF08240 Alcohol dehydrogenase GroES-like domain FYK61_14380 PF00107 Zinc-binding dehydrogenase FYK61_14400 PF07715 TonB-dependent Receptor Plug Domain FYK61_14400 PF00593 TonB dependent receptor FYK61_14410 PF00082 Subtilase family FYK61_14410 PF01483 Proprotein convertase P-domain FYK61_14420 PF00248 Aldo/keto reductase family FYK61_14425 PF07690 Major Facilitator Superfamily FYK61_14450 PF16859 Tetracyclin repressor-like, C-terminal domain FYK61_14450 PF00440 Bacterial regulatory proteins, tetR family FYK61_14455 PF02321 Outer membrane efflux protein FYK61_14460 PF00873 AcrB/AcrD/AcrF family FYK61_14465 PF00529 HlyD membrane-fusion protein of T1SS FYK61_14465 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FYK61_14475 PF01475 Ferric uptake regulator family FYK61_14480 PF00749 tRNA synthetases class I (E and Q), catalytic domain FYK61_14505 PF06123 Inner membrane protein CreD FYK61_14515 PF00512 His Kinase A (phospho-acceptor) domain FYK61_14515 PF00672 HAMP domain FYK61_14515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_14520 PF00486 Transcriptional regulatory protein, C terminal FYK61_14520 PF00072 Response regulator receiver domain FYK61_14525 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ FYK61_14535 PF03461 TRCF domain FYK61_14535 PF00271 Helicase conserved C-terminal domain FYK61_14535 PF00270 DEAD/DEAH box helicase FYK61_14535 PF17757 UvrB interaction domain FYK61_14535 PF02559 CarD-like/TRCF domain FYK61_14545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_14545 PF09078 CheY binding FYK61_14545 PF02895 Signal transducing histidine kinase, homodimeric domain FYK61_14545 PF01584 CheW-like domain FYK61_14545 PF01627 Hpt domain FYK61_14550 PF00672 HAMP domain FYK61_14550 PF02203 Tar ligand binding domain homologue FYK61_14550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_14555 PF01584 CheW-like domain FYK61_14560 PF00990 Diguanylate cyclase, GGDEF domain FYK61_14560 PF13426 PAS domain FYK61_14560 PF00563 EAL domain FYK61_14565 PF03705 CheR methyltransferase, all-alpha domain FYK61_14565 PF01739 CheR methyltransferase, SAM binding domain FYK61_14570 PF01339 CheB methylesterase FYK61_14570 PF00072 Response regulator receiver domain FYK61_14575 PF13091 PLD-like domain FYK61_14580 PF01431 Peptidase family M13 FYK61_14580 PF05649 Peptidase family M13 FYK61_14590 PF00300 Histidine phosphatase superfamily (branch 1) FYK61_14595 PF04493 Endonuclease V FYK61_14620 PF02678 Pirin FYK61_14620 PF05726 Pirin C-terminal cupin domain FYK61_14625 PF02554 Carbon starvation protein CstA FYK61_14625 PF13722 5TM C-terminal transporter carbon starvation CstA FYK61_14630 PF04328 Selenoprotein, putative FYK61_14645 PF12796 Ankyrin repeats (3 copies) FYK61_14670 PF02625 XdhC and CoxI family FYK61_14670 PF13478 XdhC Rossmann domain FYK61_14675 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FYK61_14675 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase FYK61_14680 PF00941 FAD binding domain in molybdopterin dehydrogenase FYK61_14680 PF03450 CO dehydrogenase flavoprotein C-terminal domain FYK61_14685 PF10518 TAT (twin-arginine translocation) pathway signal sequence FYK61_14685 PF00111 2Fe-2S iron-sulfur cluster binding domain FYK61_14685 PF01799 [2Fe-2S] binding domain FYK61_14690 PF16197 Ketoacyl-synthetase C-terminal extension FYK61_14690 PF02801 Beta-ketoacyl synthase, C-terminal domain FYK61_14690 PF00107 Zinc-binding dehydrogenase FYK61_14690 PF00109 Beta-ketoacyl synthase, N-terminal domain FYK61_14690 PF08659 KR domain FYK61_14690 PF08240 Alcohol dehydrogenase GroES-like domain FYK61_14690 PF00550 Phosphopantetheine attachment site FYK61_14690 PF14765 Polyketide synthase dehydratase FYK61_14690 PF00698 Acyl transferase domain FYK61_14695 PF00990 Diguanylate cyclase, GGDEF domain FYK61_14695 PF01590 GAF domain FYK61_14695 PF00563 EAL domain FYK61_14695 PF00360 Phytochrome region FYK61_14700 PF00436 Single-strand binding protein family FYK61_14705 PF00348 Polyprenyl synthetase FYK61_14720 PF02875 Mur ligase family, glutamate ligase domain FYK61_14720 PF08245 Mur ligase middle domain FYK61_14735 PF00696 Amino acid kinase family FYK61_14735 PF01842 ACT domain FYK61_14740 PF02567 Phenazine biosynthesis-like protein FYK61_14745 PF02567 Phenazine biosynthesis-like protein FYK61_14755 PF02566 OsmC-like protein FYK61_14760 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FYK61_14760 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FYK61_14765 PF03652 Holliday junction resolvase FYK61_14770 PF02622 Uncharacterized ACR, COG1678 FYK61_14775 PF00958 GMP synthase C terminal domain FYK61_14775 PF00117 Glutamine amidotransferase class-I FYK61_14775 PF03352 Methyladenine glycosylase FYK61_14775 PF13673 Acetyltransferase (GNAT) domain FYK61_14775 PF13302 Acetyltransferase (GNAT) domain FYK61_14790 PF00437 Type II/IV secretion system protein FYK61_14795 PF00437 Type II/IV secretion system protein FYK61_14800 PF01168 Alanine racemase, N-terminal domain FYK61_14805 PF03807 NADP oxidoreductase coenzyme F420-dependent FYK61_14805 PF14748 Pyrroline-5-carboxylate reductase dimerisation FYK61_14815 PF01551 Peptidase family M23 FYK61_14835 PF01965 DJ-1/PfpI family FYK61_14845 PF02082 Transcriptional regulator FYK61_14850 PF01458 Uncharacterized protein family (UPF0051) FYK61_14855 PF00005 ABC transporter FYK61_14860 PF01458 Uncharacterized protein family (UPF0051) FYK61_14865 PF00266 Aminotransferase class-V FYK61_14875 PF00355 Rieske [2Fe-2S] domain FYK61_14880 PF07715 TonB-dependent Receptor Plug Domain FYK61_14880 PF00593 TonB dependent receptor FYK61_14885 PF18331 PKHD-type hydroxylase C-terminal domain FYK61_14885 PF13640 2OG-Fe(II) oxygenase superfamily FYK61_14910 PF02424 ApbE family FYK61_14915 PF00175 Oxidoreductase NAD-binding domain FYK61_14915 PF00667 FAD binding domain FYK61_14915 PF00258 Flavodoxin FYK61_14940 PF01636 Phosphotransferase enzyme family FYK61_14945 PF00483 Nucleotidyl transferase FYK61_14950 PF00308 Bacterial dnaA protein FYK61_14955 PF01594 AI-2E family transporter FYK61_14965 PF02769 AIR synthase related protein, C-terminal domain FYK61_14965 PF00586 AIR synthase related protein, N-terminal domain FYK61_14975 PF00551 Formyl transferase FYK61_14995 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FYK61_15000 PF01722 BolA-like protein FYK61_15005 PF01380 SIS domain FYK61_15005 PF00571 CBS domain FYK61_15020 PF03968 OstA-like protein FYK61_15025 PF00005 ABC transporter FYK61_15030 PF04552 Sigma-54, DNA binding domain FYK61_15030 PF00309 Sigma-54 factor, Activator interacting domain (AID) FYK61_15030 PF04963 Sigma-54 factor, core binding domain FYK61_15035 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FYK61_15040 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FYK61_15045 PF02603 HPr Serine kinase N terminus FYK61_15045 PF07475 HPr Serine kinase C-terminal domain FYK61_15050 PF03668 P-loop ATPase protein family FYK61_15060 PF00381 PTS HPr component phosphorylation site FYK61_15065 PF05524 PEP-utilising enzyme, N-terminal FYK61_15065 PF00391 PEP-utilising enzyme, mobile domain FYK61_15065 PF02896 PEP-utilising enzyme, TIM barrel domain FYK61_15070 PF03448 MgtE intracellular N domain FYK61_15070 PF00571 CBS domain FYK61_15070 PF01769 Divalent cation transporter FYK61_15075 PF00756 Putative esterase FYK61_15080 PF02322 Cytochrome bd terminal oxidase subunit II FYK61_15085 PF01654 Cytochrome bd terminal oxidase subunit I FYK61_15095 PF00324 Amino acid permease FYK61_15105 PF00561 alpha/beta hydrolase fold FYK61_15110 PF00196 Bacterial regulatory proteins, luxR family FYK61_15115 PF00324 Amino acid permease FYK61_15135 PF12706 Beta-lactamase superfamily domain FYK61_15140 PF04820 Tryptophan halogenase FYK61_15175 PF00376 MerR family regulatory protein FYK61_15175 PF09278 MerR, DNA binding FYK61_15180 PF07690 Major Facilitator Superfamily FYK61_15190 PF03738 Glutathionylspermidine synthase preATP-grasp FYK61_15215 PF04012 PspA/IM30 family FYK61_15225 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region FYK61_15225 PF01243 Pyridoxamine 5'-phosphate oxidase FYK61_15230 PF01202 Shikimate kinase FYK61_15235 PF01761 3-dehydroquinate synthase FYK61_15245 PF01208 Uroporphyrinogen decarboxylase (URO-D) FYK61_15250 PF07690 Major Facilitator Superfamily FYK61_15255 PF00672 HAMP domain FYK61_15255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_15255 PF17149 Periplasmic sensor domain found in signal transduction proteins FYK61_15255 PF01627 Hpt domain FYK61_15255 PF00072 Response regulator receiver domain FYK61_15255 PF00512 His Kinase A (phospho-acceptor) domain FYK61_15260 PF00072 Response regulator receiver domain FYK61_15260 PF17149 Periplasmic sensor domain found in signal transduction proteins FYK61_15260 PF00672 HAMP domain FYK61_15260 PF01627 Hpt domain FYK61_15260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_15260 PF00512 His Kinase A (phospho-acceptor) domain FYK61_15270 PF00512 His Kinase A (phospho-acceptor) domain FYK61_15270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_15270 PF00072 Response regulator receiver domain FYK61_15270 PF01627 Hpt domain FYK61_15275 PF04264 YceI-like domain FYK61_15295 PF03315 Serine dehydratase beta chain FYK61_15295 PF03313 Serine dehydratase alpha chain FYK61_15300 PF12697 Alpha/beta hydrolase family FYK61_15305 PF00742 Homoserine dehydrogenase FYK61_15305 PF03447 Homoserine dehydrogenase, NAD binding domain FYK61_15305 PF00696 Amino acid kinase family FYK61_15310 PF01053 Cys/Met metabolism PLP-dependent enzyme FYK61_15315 PF00561 alpha/beta hydrolase fold FYK61_15320 PF08525 Opacity-associated protein A N-terminal motif FYK61_15320 PF01476 LysM domain FYK61_15320 PF01551 Peptidase family M23 FYK61_15325 PF16658 Class II release factor RF3, C-terminal domain FYK61_15325 PF00009 Elongation factor Tu GTP binding domain FYK61_15330 PF03006 Haemolysin-III related FYK61_15335 PF05170 AsmA family FYK61_15340 PF00571 CBS domain FYK61_15340 PF00478 IMP dehydrogenase / GMP reductase domain FYK61_15345 PF00535 Glycosyl transferase family 2 FYK61_15350 PF00912 Transglycosylase FYK61_15355 PF01430 Hsp33 protein FYK61_15365 PF07715 TonB-dependent Receptor Plug Domain FYK61_15365 PF00593 TonB dependent receptor FYK61_15375 PF00440 Bacterial regulatory proteins, tetR family FYK61_15380 PF00561 alpha/beta hydrolase fold FYK61_15385 PF09317 Domain of unknown function (DUF1974) FYK61_15385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FYK61_15385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FYK61_15415 PF01597 Glycine cleavage H-protein FYK61_15420 PF01571 Aminomethyltransferase folate-binding domain FYK61_15420 PF08669 Glycine cleavage T-protein C-terminal barrel domain FYK61_15440 PF02694 Uncharacterised BCR, YnfA/UPF0060 family FYK61_15445 PF03819 MazG nucleotide pyrophosphohydrolase domain FYK61_15450 PF00459 Inositol monophosphatase family FYK61_15455 PF00293 NUDIX domain FYK61_15460 PF00202 Aminotransferase class-III FYK61_15465 PF04452 RNA methyltransferase FYK61_15470 PF02685 Glucokinase FYK61_15485 PF00704 Glycosyl hydrolases family 18 FYK61_15485 PF01476 LysM domain FYK61_15500 PF00933 Glycosyl hydrolase family 3 N terminal domain FYK61_15500 PF01915 Glycosyl hydrolase family 3 C-terminal domain FYK61_15500 PF14310 Fibronectin type III-like domain FYK61_15500 PF07691 PA14 domain FYK61_15510 PF01301 Glycosyl hydrolases family 35 FYK61_15515 PF13520 Amino acid permease FYK61_15525 PF11975 Family 4 glycosyl hydrolase C-terminal domain FYK61_15525 PF02056 Family 4 glycosyl hydrolase FYK61_15535 PF17678 Glycosyl hydrolase family 92 N-terminal domain FYK61_15535 PF07971 Glycosyl hydrolase family 92 FYK61_15540 PF01301 Glycosyl hydrolases family 35 FYK61_15570 PF03932 CutC family FYK61_15575 PF01112 Asparaginase FYK61_15580 PF13302 Acetyltransferase (GNAT) domain FYK61_15595 PF02895 Signal transducing histidine kinase, homodimeric domain FYK61_15595 PF01584 CheW-like domain FYK61_15595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_15595 PF00072 Response regulator receiver domain FYK61_15595 PF01627 Hpt domain FYK61_15600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_15600 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term FYK61_15605 PF01584 CheW-like domain FYK61_15610 PF00072 Response regulator receiver domain FYK61_15615 PF00072 Response regulator receiver domain FYK61_15620 PF02951 Prokaryotic glutathione synthetase, N-terminal domain FYK61_15620 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain FYK61_15630 PF03747 ADP-ribosylglycohydrolase FYK61_15635 PF00814 Glycoprotease family FYK61_15640 PF04851 Type III restriction enzyme, res subunit FYK61_15640 PF13307 Helicase C-terminal domain FYK61_15650 PF00912 Transglycosylase FYK61_15650 PF00905 Penicillin binding protein transpeptidase domain FYK61_15650 PF14814 Bifunctional transglycosylase second domain FYK61_15655 PF00535 Glycosyl transferase family 2 FYK61_15655 PF01501 Glycosyl transferase family 8 FYK61_15665 PF13291 ACT domain FYK61_15665 PF04607 Region found in RelA / SpoT proteins FYK61_15665 PF02824 TGS domain FYK61_15670 PF08042 PqqA family FYK61_15675 PF12706 Beta-lactamase superfamily domain FYK61_15680 PF03070 TENA/THI-4/PQQC family FYK61_15685 PF05402 Coenzyme PQQ synthesis protein D (PqqD) FYK61_15690 PF13186 Iron-sulfur cluster-binding domain FYK61_15690 PF04055 Radical SAM superfamily FYK61_15705 PF02685 Glucokinase FYK61_15715 PF11898 Domain of unknown function (DUF3418) FYK61_15715 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold FYK61_15715 PF00271 Helicase conserved C-terminal domain FYK61_15715 PF00270 DEAD/DEAH box helicase FYK61_15715 PF04408 Helicase associated domain (HA2) FYK61_15720 PF00210 Ferritin-like domain FYK61_15725 PF00570 HRDC domain FYK61_15725 PF00271 Helicase conserved C-terminal domain FYK61_15725 PF00270 DEAD/DEAH box helicase FYK61_15725 PF16124 RecQ zinc-binding FYK61_15725 PF09382 RQC domain FYK61_15765 PF00672 HAMP domain FYK61_15765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_15765 PF02203 Tar ligand binding domain homologue FYK61_15770 PF01810 LysE type translocator FYK61_15775 PF03466 LysR substrate binding domain FYK61_15775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_15785 PF13581 Histidine kinase-like ATPase domain FYK61_15785 PF13426 PAS domain FYK61_15785 PF07536 HWE histidine kinase FYK61_15790 PF06508 Queuosine biosynthesis protein QueC FYK61_15800 PF04055 Radical SAM superfamily FYK61_15810 PF00691 OmpA family FYK61_15815 PF04052 TolB amino-terminal domain FYK61_15815 PF07676 WD40-like Beta Propeller Repeat FYK61_15825 PF02472 Biopolymer transport protein ExbD/TolR FYK61_15830 PF01618 MotA/TolQ/ExbB proton channel family FYK61_15835 PF03061 Thioesterase superfamily FYK61_15840 PF17864 RuvB AAA lid domain FYK61_15840 PF05491 RuvB C-terminal winged helix domain FYK61_15840 PF05496 Holliday junction DNA helicase RuvB P-loop domain FYK61_15845 PF02705 K+ potassium transporter FYK61_15850 PF07499 RuvA, C-terminal domain FYK61_15850 PF01330 RuvA N terminal domain FYK61_15855 PF02075 Crossover junction endodeoxyribonuclease RuvC FYK61_15860 PF01709 Transcriptional regulator FYK61_15875 PF02938 GAD domain FYK61_15875 PF01336 OB-fold nucleic acid binding domain FYK61_15875 PF00152 tRNA synthetases class II (D, K and N) FYK61_15890 PF07690 Major Facilitator Superfamily FYK61_15900 PF05506 Domain of unknown function (DUF756) FYK61_15900 PF04185 Phosphoesterase family FYK61_15920 PF03466 LysR substrate binding domain FYK61_15920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_15930 PF00005 ABC transporter FYK61_15930 PF12848 ABC transporter FYK61_15935 PF00593 TonB dependent receptor FYK61_15935 PF07715 TonB-dependent Receptor Plug Domain FYK61_15945 PF00593 TonB dependent receptor FYK61_15945 PF07715 TonB-dependent Receptor Plug Domain FYK61_15950 PF00593 TonB dependent receptor FYK61_15950 PF07715 TonB-dependent Receptor Plug Domain FYK61_15955 PF00067 Cytochrome P450 FYK61_15960 PF02254 TrkA-N domain FYK61_15960 PF00999 Sodium/hydrogen exchanger family FYK61_15970 PF00593 TonB dependent receptor FYK61_15970 PF07660 Secretin and TonB N terminus short domain FYK61_15970 PF07715 TonB-dependent Receptor Plug Domain FYK61_15980 PF06276 Ferric iron reductase FhuF-like transporter FYK61_15980 PF04183 IucA / IucC family FYK61_15985 PF07690 Major Facilitator Superfamily FYK61_15990 PF06276 Ferric iron reductase FhuF-like transporter FYK61_15990 PF04183 IucA / IucC family FYK61_15995 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FYK61_15995 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FYK61_16010 PF02654 Cobalamin-5-phosphate synthase FYK61_16020 PF02277 Phosphoribosyltransferase FYK61_16025 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase FYK61_16030 PF07685 CobB/CobQ-like glutamine amidotransferase domain FYK61_16030 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FYK61_16035 PF00155 Aminotransferase class I and II FYK61_16040 PF03186 CobD/Cbib protein FYK61_16040 PF17113 Regulatory signalling modulator protein AmpE FYK61_16045 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP FYK61_16045 PF12557 Cob(I)alamin adenosyltransferase N terminal FYK61_16065 PF07715 TonB-dependent Receptor Plug Domain FYK61_16065 PF00593 TonB dependent receptor FYK61_16070 PF17871 AAA lid domain FYK61_16070 PF07724 AAA domain (Cdc48 subfamily) FYK61_16070 PF00004 ATPase family associated with various cellular activities (AAA) FYK61_16070 PF02861 Clp amino terminal domain, pathogenicity island component FYK61_16070 PF10431 C-terminal, D2-small domain, of ClpB protein FYK61_16075 PF00005 ABC transporter FYK61_16080 PF00528 Binding-protein-dependent transport system inner membrane component FYK61_16085 PF09084 NMT1/THI5 like FYK61_16090 PF00248 Aldo/keto reductase family FYK61_16095 PF00296 Luciferase-like monooxygenase FYK61_16100 PF07715 TonB-dependent Receptor Plug Domain FYK61_16100 PF00593 TonB dependent receptor FYK61_16105 PF01541 GIY-YIG catalytic domain FYK61_16140 PF00593 TonB dependent receptor FYK61_16140 PF07715 TonB-dependent Receptor Plug Domain FYK61_16145 PF02358 Trehalose-phosphatase FYK61_16150 PF00723 Glycosyl hydrolases family 15 FYK61_16155 PF00982 Glycosyltransferase family 20 FYK61_16160 PF01011 PQQ enzyme repeat FYK61_16165 PF00672 HAMP domain FYK61_16165 PF02203 Tar ligand binding domain homologue FYK61_16165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_16170 PF04134 Protein of unknown function, DUF393 FYK61_16180 PF02578 Multi-copper polyphenol oxidoreductase laccase FYK61_16185 PF00849 RNA pseudouridylate synthase FYK61_16190 PF13525 Outer membrane lipoprotein FYK61_16200 PF00795 Carbon-nitrogen hydrolase FYK61_16200 PF02540 NAD synthase FYK61_16210 PF00549 CoA-ligase FYK61_16210 PF02629 CoA binding domain FYK61_16215 PF00549 CoA-ligase FYK61_16215 PF08442 ATP-grasp domain FYK61_16220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_16220 PF00512 His Kinase A (phospho-acceptor) domain FYK61_16225 PF02954 Bacterial regulatory protein, Fis family FYK61_16225 PF00072 Response regulator receiver domain FYK61_16225 PF00158 Sigma-54 interaction domain FYK61_16230 PF00437 Type II/IV secretion system protein FYK61_16230 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FYK61_16235 PF07963 Prokaryotic N-terminal methylation motif FYK61_16235 PF00114 Pilin (bacterial filament) FYK61_16245 PF00482 Type II secretion system (T2SS), protein F FYK61_16250 PF06750 Bacterial Peptidase A24 N-terminal domain FYK61_16250 PF01478 Type IV leader peptidase family FYK61_16255 PF01121 Dephospho-CoA kinase FYK61_16275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_16275 PF11808 Phosphate regulon sensor protein PhoR FYK61_16275 PF00512 His Kinase A (phospho-acceptor) domain FYK61_16275 PF00989 PAS fold FYK61_16280 PF00486 Transcriptional regulatory protein, C terminal FYK61_16280 PF00072 Response regulator receiver domain FYK61_16290 PF18030 RimK PreATP-grasp domain FYK61_16290 PF08443 RimK-like ATP-grasp domain FYK61_16295 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FYK61_16295 PF00128 Alpha amylase, catalytic domain FYK61_16320 PF03797 Autotransporter beta-domain FYK61_16320 PF00657 GDSL-like Lipase/Acylhydrolase FYK61_16330 PF05690 Thiazole biosynthesis protein ThiG FYK61_16335 PF02390 Putative methyltransferase FYK61_16340 PF03600 Citrate transporter FYK61_16340 PF02080 TrkA-C domain FYK61_16355 PF01557 Fumarylacetoacetate (FAA) hydrolase family FYK61_16360 PF01741 Large-conductance mechanosensitive channel, MscL FYK61_16370 PF00356 Bacterial regulatory proteins, lacI family FYK61_16380 PF00703 Glycosyl hydrolases family 2 FYK61_16380 PF02837 Glycosyl hydrolases family 2, sugar binding domain FYK61_16380 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain FYK61_16385 PF14508 Glycosyl-hydrolase 97 N-terminal FYK61_16385 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation FYK61_16385 PF10566 Glycoside hydrolase 97 FYK61_16395 PF00135 Carboxylesterase family FYK61_16400 PF00588 SpoU rRNA Methylase family FYK61_16400 PF08032 RNA 2'-O ribose methyltransferase substrate binding FYK61_16410 PF01433 Peptidase family M1 domain FYK61_16410 PF11838 ERAP1-like C-terminal domain FYK61_16440 PF00873 AcrB/AcrD/AcrF family FYK61_16445 PF00529 HlyD membrane-fusion protein of T1SS FYK61_16445 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FYK61_16450 PF00009 Elongation factor Tu GTP binding domain FYK61_16455 PF01507 Phosphoadenosine phosphosulfate reductase family FYK61_16460 PF00667 FAD binding domain FYK61_16460 PF00175 Oxidoreductase NAD-binding domain FYK61_16460 PF00258 Flavodoxin FYK61_16465 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FYK61_16465 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FYK61_16470 PF01507 Phosphoadenosine phosphosulfate reductase family FYK61_16480 PF00593 TonB dependent receptor FYK61_16480 PF07715 TonB-dependent Receptor Plug Domain FYK61_16490 PF01627 Hpt domain FYK61_16490 PF00512 His Kinase A (phospho-acceptor) domain FYK61_16490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_16490 PF00072 Response regulator receiver domain FYK61_16500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_16500 PF03466 LysR substrate binding domain FYK61_16505 PF14824 Sirohaem biosynthesis protein central FYK61_16505 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FYK61_16505 PF10414 Sirohaem synthase dimerisation region FYK61_16510 PF00291 Pyridoxal-phosphate dependent enzyme FYK61_16520 PF01661 Macro domain FYK61_16525 PF00274 Fructose-bisphosphate aldolase class-I FYK61_16530 PF00224 Pyruvate kinase, barrel domain FYK61_16530 PF02887 Pyruvate kinase, alpha/beta domain FYK61_16535 PF13419 Haloacid dehalogenase-like hydrolase FYK61_16540 PF00162 Phosphoglycerate kinase FYK61_16560 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FYK61_16560 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FYK61_16570 PF03922 OmpW family FYK61_16575 PF03922 OmpW family FYK61_16585 PF00753 Metallo-beta-lactamase superfamily FYK61_16585 PF04273 Putative phosphatase (DUF442) FYK61_16595 PF00528 Binding-protein-dependent transport system inner membrane component FYK61_16600 PF00005 ABC transporter FYK61_16600 PF03459 TOBE domain FYK61_16635 PF01476 LysM domain FYK61_16635 PF03734 L,D-transpeptidase catalytic domain FYK61_16640 PF04225 Opacity-associated protein A LysM-like domain FYK61_16640 PF01551 Peptidase family M23 FYK61_16645 PF07715 TonB-dependent Receptor Plug Domain FYK61_16645 PF00593 TonB dependent receptor FYK61_16650 PF12146 Serine aminopeptidase, S33 FYK61_16655 PF02779 Transketolase, pyrimidine binding domain FYK61_16655 PF00456 Transketolase, thiamine diphosphate binding domain FYK61_16655 PF02780 Transketolase, C-terminal domain FYK61_16660 PF00375 Sodium:dicarboxylate symporter family FYK61_16670 PF07584 Aerotolerance regulator N-terminal FYK61_16670 PF00092 von Willebrand factor type A domain FYK61_16690 PF07726 ATPase family associated with various cellular activities (AAA) FYK61_16690 PF17863 AAA lid domain FYK61_16695 PF03958 Bacterial type II/III secretion system short domain FYK61_16695 PF00263 Bacterial type II and III secretion system protein FYK61_16695 PF07660 Secretin and TonB N terminus short domain FYK61_16695 PF11741 AMIN domain FYK61_16700 PF04351 Pilus assembly protein, PilP FYK61_16705 PF04350 Pilus assembly protein, PilO FYK61_16710 PF05137 Fimbrial assembly protein (PilN) FYK61_16715 PF11104 Type IV pilus assembly protein PilM; FYK61_16720 PF00912 Transglycosylase FYK61_16720 PF17092 Penicillin-binding protein OB-like domain FYK61_16720 PF00905 Penicillin binding protein transpeptidase domain FYK61_16730 PF00285 Citrate synthase, C-terminal domain FYK61_16735 PF01197 Ribosomal protein L31 FYK61_16740 PF01156 Inosine-uridine preferring nucleoside hydrolase FYK61_16745 PF00271 Helicase conserved C-terminal domain FYK61_16745 PF00270 DEAD/DEAH box helicase FYK61_16745 PF17191 RecG wedge domain FYK61_16750 PF01042 Endoribonuclease L-PSP FYK61_16755 PF08666 SAF domain FYK61_16755 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus FYK61_16760 PF03573 outer membrane porin, OprD family FYK61_16765 PF13378 Enolase C-terminal domain-like FYK61_16765 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FYK61_16770 PF07690 Major Facilitator Superfamily FYK61_16775 PF00171 Aldehyde dehydrogenase family FYK61_16780 PF00701 Dihydrodipicolinate synthetase family FYK61_16785 PF03466 LysR substrate binding domain FYK61_16785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_16790 PF13291 ACT domain FYK61_16790 PF02824 TGS domain FYK61_16790 PF04607 Region found in RelA / SpoT proteins FYK61_16795 PF01192 RNA polymerase Rpb6 FYK61_16800 PF00625 Guanylate kinase FYK61_16805 PF08340 Domain of unknown function (DUF1732) FYK61_16805 PF03755 YicC-like family, N-terminal region FYK61_16810 PF03725 3' exoribonuclease family, domain 2 FYK61_16810 PF01138 3' exoribonuclease family, domain 1 FYK61_16820 PF01725 Ham1 family FYK61_16825 PF04055 Radical SAM superfamily FYK61_16825 PF06969 HemN C-terminal domain FYK61_16840 PF00557 Metallopeptidase family M24 FYK61_16850 PF05195 Aminopeptidase P, N-terminal domain FYK61_16850 PF00557 Metallopeptidase family M24 FYK61_16855 PF03695 Uncharacterised protein family (UPF0149) FYK61_16865 PF05164 Cell division protein ZapA FYK61_16875 PF01812 5-formyltetrahydrofolate cyclo-ligase family FYK61_16885 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) FYK61_16895 PF13369 Transglutaminase-like superfamily FYK61_16900 PF00301 Rubredoxin FYK61_16905 PF02581 Thiamine monophosphate synthase FYK61_16925 PF00202 Aminotransferase class-III FYK61_16930 PF17874 MalT-like TPR region FYK61_16930 PF00196 Bacterial regulatory proteins, luxR family FYK61_16935 PF00127 Copper binding proteins, plastocyanin/azurin family FYK61_16940 PF00155 Aminotransferase class I and II FYK61_16950 PF00034 Cytochrome c FYK61_16950 PF13442 Cytochrome C oxidase, cbb3-type, subunit III FYK61_16955 PF01593 Flavin containing amine oxidoreductase FYK61_16970 PF00202 Aminotransferase class-III FYK61_16975 PF00520 Ion transport protein FYK61_16975 PF00027 Cyclic nucleotide-binding domain FYK61_16990 PF01569 PAP2 superfamily FYK61_16995 PF01062 Bestrophin, RFP-TM, chloride channel FYK61_17005 PF08245 Mur ligase middle domain FYK61_17005 PF02875 Mur ligase family, glutamate ligase domain FYK61_17005 PF01225 Mur ligase family, catalytic domain FYK61_17015 PF00365 Phosphofructokinase FYK61_17025 PF03030 Inorganic H+ pyrophosphatase FYK61_17035 PF00719 Inorganic pyrophosphatase FYK61_17045 PF00593 TonB dependent receptor FYK61_17045 PF07715 TonB-dependent Receptor Plug Domain FYK61_17050 PF12833 Helix-turn-helix domain FYK61_17055 PF18500 CadC C-terminal domain 1 FYK61_17055 PF00486 Transcriptional regulatory protein, C terminal FYK61_17060 PF13667 ThiC-associated domain FYK61_17060 PF01964 Radical SAM ThiC family FYK61_17065 PF00593 TonB dependent receptor FYK61_17065 PF07715 TonB-dependent Receptor Plug Domain FYK61_17070 PF00672 HAMP domain FYK61_17070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_17080 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain FYK61_17080 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain FYK61_17085 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FYK61_17085 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FYK61_17085 PF00205 Thiamine pyrophosphate enzyme, central domain FYK61_17095 PF00291 Pyridoxal-phosphate dependent enzyme FYK61_17100 PF00682 HMGL-like FYK61_17100 PF08502 LeuA allosteric (dimerisation) domain FYK61_17105 PF00180 Isocitrate/isopropylmalate dehydrogenase FYK61_17110 PF00694 Aconitase C-terminal domain FYK61_17115 PF00330 Aconitase family (aconitate hydratase) FYK61_17120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_17125 PF00990 Diguanylate cyclase, GGDEF domain FYK61_17140 PF02321 Outer membrane efflux protein FYK61_17145 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) FYK61_17150 PF03279 Bacterial lipid A biosynthesis acyltransferase FYK61_17175 PF00664 ABC transporter transmembrane region FYK61_17175 PF00005 ABC transporter FYK61_17175 PF03412 Peptidase C39 family FYK61_17190 PF00529 HlyD membrane-fusion protein of T1SS FYK61_17190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FYK61_17205 PF01515 Phosphate acetyl/butaryl transferase FYK61_17205 PF00390 Malic enzyme, N-terminal domain FYK61_17205 PF03949 Malic enzyme, NAD binding domain FYK61_17210 PF00375 Sodium:dicarboxylate symporter family FYK61_17220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_17220 PF02743 Cache domain FYK61_17220 PF00512 His Kinase A (phospho-acceptor) domain FYK61_17225 PF07690 Major Facilitator Superfamily FYK61_17235 PF03466 LysR substrate binding domain FYK61_17235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_17240 PF00248 Aldo/keto reductase family FYK61_17255 PF00072 Response regulator receiver domain FYK61_17255 PF00196 Bacterial regulatory proteins, luxR family FYK61_17265 PF08521 Two-component sensor kinase N-terminal FYK61_17265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_17265 PF00512 His Kinase A (phospho-acceptor) domain FYK61_17270 PF00072 Response regulator receiver domain FYK61_17270 PF00486 Transcriptional regulatory protein, C terminal FYK61_17280 PF03600 Citrate transporter FYK61_17285 PF00106 short chain dehydrogenase FYK61_17290 PF00356 Bacterial regulatory proteins, lacI family FYK61_17305 PF00128 Alpha amylase, catalytic domain FYK61_17325 PF03193 RsgA GTPase FYK61_17355 PF00664 ABC transporter transmembrane region FYK61_17355 PF00005 ABC transporter FYK61_17355 PF03412 Peptidase C39 family FYK61_17360 PF00155 Aminotransferase class I and II FYK61_17375 PF01522 Polysaccharide deacetylase FYK61_17380 PF00462 Glutaredoxin FYK61_17395 PF01979 Amidohydrolase family FYK61_17400 PF01979 Amidohydrolase family FYK61_17420 PF02645 Uncharacterised protein, DegV family COG1307 FYK61_17425 PF01327 Polypeptide deformylase FYK61_17430 PF03960 ArsC family FYK61_17445 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) FYK61_17450 PF01270 Glycosyl hydrolases family 8 FYK61_17455 PF03170 Bacterial cellulose synthase subunit FYK61_17460 PF03552 Cellulose synthase FYK61_17460 PF00535 Glycosyl transferase family 2 FYK61_17460 PF07238 PilZ domain FYK61_17475 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FYK61_17475 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FYK61_17510 PF07715 TonB-dependent Receptor Plug Domain FYK61_17510 PF00593 TonB dependent receptor FYK61_17520 PF00392 Bacterial regulatory proteins, gntR family FYK61_17520 PF07702 UTRA domain FYK61_17530 PF00263 Bacterial type II and III secretion system protein FYK61_17530 PF03958 Bacterial type II/III secretion system short domain FYK61_17540 PF10741 Type II secretion system (T2SS), protein M subtype b FYK61_17545 PF05137 Fimbrial assembly protein (PilN) FYK61_17550 PF03934 Type II secretion system (T2SS), protein K FYK61_17560 PF07963 Prokaryotic N-terminal methylation motif FYK61_17565 PF12019 Type II transport protein GspH FYK61_17570 PF08334 Type II secretion system (T2SS), protein G FYK61_17575 PF00482 Type II secretion system (T2SS), protein F FYK61_17580 PF00437 Type II/IV secretion system protein FYK61_17580 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FYK61_17585 PF04151 Bacterial pre-peptidase C-terminal domain FYK61_17585 PF00082 Subtilase family FYK61_17590 PF05658 Head domain of trimeric autotransporter adhesin FYK61_17590 PF13018 Extended Signal Peptide of Type V secretion system FYK61_17590 PF05662 Coiled stalk of trimeric autotransporter adhesin FYK61_17590 PF03895 YadA-like membrane anchor domain FYK61_17595 PF00082 Subtilase family FYK61_17595 PF04151 Bacterial pre-peptidase C-terminal domain FYK61_17600 PF13018 Extended Signal Peptide of Type V secretion system FYK61_17600 PF03895 YadA-like membrane anchor domain FYK61_17600 PF05658 Head domain of trimeric autotransporter adhesin FYK61_17600 PF05662 Coiled stalk of trimeric autotransporter adhesin FYK61_17605 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal FYK61_17605 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain FYK61_17605 PF02769 AIR synthase related protein, C-terminal domain FYK61_17610 PF10411 Disulfide bond isomerase protein N-terminus FYK61_17610 PF13098 Thioredoxin-like domain FYK61_17615 PF00589 Phage integrase family FYK61_17615 PF02899 Phage integrase, N-terminal SAM-like domain FYK61_17630 PF03739 Lipopolysaccharide export system permease LptF/LptG FYK61_17640 PF00883 Cytosol aminopeptidase family, catalytic domain FYK61_17640 PF02789 Cytosol aminopeptidase family, N-terminal domain FYK61_17655 PF08264 Anticodon-binding domain of tRNA FYK61_17655 PF00133 tRNA synthetases class I (I, L, M and V) FYK61_17655 PF10458 Valyl tRNA synthetase tRNA binding arm FYK61_17675 PF01464 Transglycosylase SLT domain FYK61_17680 PF00544 Pectate lyase FYK61_17700 PF01066 CDP-alcohol phosphatidyltransferase FYK61_17710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FYK61_17710 PF03129 Anticodon binding domain FYK61_17710 PF04073 Aminoacyl-tRNA editing domain FYK61_17715 PF00816 H-NS histone family FYK61_17725 PF02405 Permease MlaE FYK61_17730 PF00005 ABC transporter FYK61_17735 PF02470 MlaD protein FYK61_17735 PF03886 ABC-type transport auxiliary lipoprotein component FYK61_17755 PF01144 Coenzyme A transferase FYK61_17760 PF01144 Coenzyme A transferase FYK61_17765 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FYK61_17765 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FYK61_17765 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FYK61_17765 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FYK61_17770 PF01050 Mannose-6-phosphate isomerase FYK61_17770 PF00483 Nucleotidyl transferase FYK61_17775 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FYK61_17775 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FYK61_17775 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FYK61_17780 PF04321 RmlD substrate binding domain FYK61_17785 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase FYK61_17790 PF00483 Nucleotidyl transferase FYK61_17795 PF16363 GDP-mannose 4,6 dehydratase FYK61_17800 PF01012 Electron transfer flavoprotein domain FYK61_17805 PF01012 Electron transfer flavoprotein domain FYK61_17805 PF00766 Electron transfer flavoprotein FAD-binding domain FYK61_17815 PF01040 UbiA prenyltransferase family FYK61_17820 PF01565 FAD binding domain FYK61_17820 PF04030 D-arabinono-1,4-lactone oxidase FYK61_17825 PF00106 short chain dehydrogenase FYK61_17830 PF01370 NAD dependent epimerase/dehydratase family FYK61_17835 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FYK61_17835 PF07992 Pyridine nucleotide-disulphide oxidoreductase FYK61_17855 PF16363 GDP-mannose 4,6 dehydratase FYK61_17860 PF16363 GDP-mannose 4,6 dehydratase FYK61_17865 PF13477 Glycosyl transferase 4-like FYK61_17865 PF00534 Glycosyl transferases group 1 FYK61_17870 PF13847 Methyltransferase domain FYK61_17870 PF00069 Protein kinase domain FYK61_17875 PF00005 ABC transporter FYK61_17885 PF13439 Glycosyltransferase Family 4 FYK61_17885 PF00534 Glycosyl transferases group 1 FYK61_17890 PF01053 Cys/Met metabolism PLP-dependent enzyme FYK61_17895 PF00291 Pyridoxal-phosphate dependent enzyme FYK61_17895 PF00571 CBS domain FYK61_17915 PF00437 Type II/IV secretion system protein FYK61_17920 PF14497 Glutathione S-transferase, C-terminal domain FYK61_17920 PF02798 Glutathione S-transferase, N-terminal domain FYK61_17935 PF00271 Helicase conserved C-terminal domain FYK61_17935 PF00270 DEAD/DEAH box helicase FYK61_17945 PF00593 TonB dependent receptor FYK61_17945 PF07715 TonB-dependent Receptor Plug Domain FYK61_17950 PF01242 6-pyruvoyl tetrahydropterin synthase FYK61_17975 PF13185 GAF domain FYK61_17985 PF00756 Putative esterase FYK61_17990 PF00593 TonB dependent receptor FYK61_17990 PF07715 TonB-dependent Receptor Plug Domain FYK61_17995 PF13419 Haloacid dehalogenase-like hydrolase FYK61_18000 PF00817 impB/mucB/samB family FYK61_18000 PF11799 impB/mucB/samB family C-terminal domain FYK61_18005 PF07977 FabA-like domain FYK61_18010 PF00109 Beta-ketoacyl synthase, N-terminal domain FYK61_18010 PF02801 Beta-ketoacyl synthase, C-terminal domain FYK61_18020 PF01432 Peptidase family M3 FYK61_18035 PF07732 Multicopper oxidase FYK61_18035 PF07731 Multicopper oxidase FYK61_18035 PF00394 Multicopper oxidase FYK61_18040 PF05275 Copper resistance protein B precursor (CopB) FYK61_18045 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FYK61_18070 PF01380 SIS domain FYK61_18075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FYK61_18080 PF00005 ABC transporter FYK61_18085 PF02687 FtsX-like permease family FYK61_18085 PF12704 MacB-like periplasmic core domain FYK61_18090 PF02687 FtsX-like permease family FYK61_18090 PF00005 ABC transporter FYK61_18090 PF12704 MacB-like periplasmic core domain FYK61_18100 PF00158 Sigma-54 interaction domain FYK61_18100 PF00072 Response regulator receiver domain FYK61_18100 PF02954 Bacterial regulatory protein, Fis family FYK61_18105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_18105 PF00512 His Kinase A (phospho-acceptor) domain FYK61_18110 PF12804 MobA-like NTP transferase domain FYK61_18110 PF00132 Bacterial transferase hexapeptide (six repeats) FYK61_18110 PF14602 Hexapeptide repeat of succinyl-transferase FYK61_18125 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain FYK61_18125 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FYK61_18130 PF02874 ATP synthase alpha/beta family, beta-barrel domain FYK61_18130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FYK61_18135 PF00231 ATP synthase FYK61_18140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FYK61_18140 PF02874 ATP synthase alpha/beta family, beta-barrel domain FYK61_18140 PF00306 ATP synthase alpha/beta chain, C terminal domain FYK61_18145 PF00213 ATP synthase delta (OSCP) subunit FYK61_18150 PF00430 ATP synthase B/B' CF(0) FYK61_18155 PF00137 ATP synthase subunit C FYK61_18160 PF00119 ATP synthase A chain FYK61_18180 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FYK61_18180 PF07992 Pyridine nucleotide-disulphide oxidoreductase FYK61_18190 PF02817 e3 binding domain FYK61_18190 PF00364 Biotin-requiring enzyme FYK61_18190 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FYK61_18220 PF03180 NLPA lipoprotein FYK61_18225 PF00528 Binding-protein-dependent transport system inner membrane component FYK61_18230 PF09383 NIL domain FYK61_18230 PF00005 ABC transporter FYK61_18235 PF00892 EamA-like transporter family FYK61_18240 PF04461 Protein of unknown function (DUF520) FYK61_18250 PF00072 Response regulator receiver domain FYK61_18250 PF00989 PAS fold FYK61_18250 PF01627 Hpt domain FYK61_18250 PF18415 Histidine kinase receptor ArcB trans-membrane domain FYK61_18250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_18250 PF00512 His Kinase A (phospho-acceptor) domain FYK61_18270 PF13419 Haloacid dehalogenase-like hydrolase FYK61_18275 PF00849 RNA pseudouridylate synthase FYK61_18275 PF01479 S4 domain FYK61_18280 PF08468 Methyltransferase small domain N-terminal FYK61_18280 PF05175 Methyltransferase small domain FYK61_18290 PF07995 Glucose / Sorbosone dehydrogenase FYK61_18300 PF00989 PAS fold FYK61_18300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_18300 PF00512 His Kinase A (phospho-acceptor) domain FYK61_18320 PF00842 Alanine racemase, C-terminal domain FYK61_18320 PF01168 Alanine racemase, N-terminal domain FYK61_18325 PF01266 FAD dependent oxidoreductase FYK61_18330 PF01037 Lrp/AsnC ligand binding domain FYK61_18340 PF01641 SelR domain FYK61_18350 PF01618 MotA/TolQ/ExbB proton channel family FYK61_18355 PF13677 Membrane MotB of proton-channel complex MotA/MotB FYK61_18355 PF00691 OmpA family FYK61_18380 PF01061 ABC-2 type transporter FYK61_18385 PF00005 ABC transporter FYK61_18390 PF00999 Sodium/hydrogen exchanger family FYK61_18395 PF02469 Fasciclin domain FYK61_18400 PF03167 Uracil DNA glycosylase superfamily FYK61_18410 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase FYK61_18420 PF03466 LysR substrate binding domain FYK61_18420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_18430 PF00248 Aldo/keto reductase family FYK61_18440 PF01431 Peptidase family M13 FYK61_18440 PF05649 Peptidase family M13 FYK61_18455 PF13520 Amino acid permease FYK61_18465 PF04397 LytTr DNA-binding domain FYK61_18465 PF00072 Response regulator receiver domain FYK61_18470 PF02743 Cache domain FYK61_18470 PF06580 Histidine kinase FYK61_18470 PF00672 HAMP domain FYK61_18470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_18485 PF05974 Domain of unknown function (DUF892) FYK61_18490 PF05067 Manganese containing catalase FYK61_18510 PF01739 CheR methyltransferase, SAM binding domain FYK61_18510 PF01339 CheB methylesterase FYK61_18510 PF03705 CheR methyltransferase, all-alpha domain FYK61_18510 PF08448 PAS fold FYK61_18525 PF00158 Sigma-54 interaction domain FYK61_18525 PF02954 Bacterial regulatory protein, Fis family FYK61_18525 PF00072 Response regulator receiver domain FYK61_18535 PF01654 Cytochrome bd terminal oxidase subunit I FYK61_18540 PF02322 Cytochrome bd terminal oxidase subunit II FYK61_18560 PF16363 GDP-mannose 4,6 dehydratase FYK61_18570 PF03275 UDP-galactopyranose mutase FYK61_18580 PF00005 ABC transporter FYK61_18580 PF00664 ABC transporter transmembrane region FYK61_18595 PF13823 Alcohol dehydrogenase GroES-associated FYK61_18595 PF00107 Zinc-binding dehydrogenase FYK61_18595 PF08240 Alcohol dehydrogenase GroES-like domain FYK61_18640 PF07715 TonB-dependent Receptor Plug Domain FYK61_18640 PF00593 TonB dependent receptor FYK61_18655 PF00005 ABC transporter FYK61_18665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_18665 PF03466 LysR substrate binding domain FYK61_18670 PF01042 Endoribonuclease L-PSP FYK61_18685 PF00672 HAMP domain FYK61_18685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FYK61_18700 PF03466 LysR substrate binding domain FYK61_18700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_18705 PF02525 Flavodoxin-like fold FYK61_18735 PF01740 STAS domain FYK61_18735 PF00916 Sulfate permease family FYK61_18745 PF00557 Metallopeptidase family M24 FYK61_18775 PF11798 IMS family HHH motif FYK61_18775 PF00817 impB/mucB/samB family FYK61_18775 PF11799 impB/mucB/samB family C-terminal domain FYK61_18775 PF13438 Domain of unknown function (DUF4113) FYK61_18795 PF01555 DNA methylase FYK61_18850 PF00182 Chitinase class I FYK61_19020 PF04539 Sigma-70 region 3 FYK61_19020 PF04542 Sigma-70 region 2 FYK61_19020 PF00140 Sigma-70 factor, region 1.2 FYK61_19020 PF03979 Sigma-70 factor, region 1.1 FYK61_19020 PF04546 Sigma-70, non-essential region FYK61_19020 PF04545 Sigma-70, region 4 FYK61_19025 PF02580 D-Tyr-tRNA(Tyr) deacylase FYK61_19030 PF03279 Bacterial lipid A biosynthesis acyltransferase FYK61_19050 PF00925 GTP cyclohydrolase II FYK61_19070 PF00535 Glycosyl transferase family 2 FYK61_19085 PF01189 16S rRNA methyltransferase RsmB/F FYK61_19085 PF01029 NusB family FYK61_19090 PF02911 Formyl transferase, C-terminal domain FYK61_19090 PF00551 Formyl transferase FYK61_19095 PF01327 Polypeptide deformylase FYK61_19100 PF01476 LysM domain FYK61_19105 PF02481 DNA recombination-mediator protein A FYK61_19105 PF17782 DprA winged helix domain FYK61_19110 PF04361 Protein of unknown function (DUF494) FYK61_19115 PF07963 Prokaryotic N-terminal methylation motif FYK61_19115 PF00114 Pilin (bacterial filament) FYK61_19125 PF13368 Topoisomerase C-terminal repeat FYK61_19125 PF01751 Toprim domain FYK61_19125 PF01131 DNA topoisomerase FYK61_19130 PF01300 Telomere recombination FYK61_19155 PF01343 Peptidase family S49 FYK61_19160 PF01554 MatE FYK61_19180 PF00270 DEAD/DEAH box helicase FYK61_19180 PF00271 Helicase conserved C-terminal domain FYK61_19180 PF17764 3′ DNA-binding domain (3′BD) FYK61_19180 PF18074 Primosomal protein N C-terminal domain FYK61_19180 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FYK61_19185 PF13417 Glutathione S-transferase, N-terminal domain FYK61_19185 PF00043 Glutathione S-transferase, C-terminal domain FYK61_19200 PF07992 Pyridine nucleotide-disulphide oxidoreductase FYK61_19210 PF04542 Sigma-70 region 2 FYK61_19210 PF04545 Sigma-70, region 4 FYK61_19215 PF03167 Uracil DNA glycosylase superfamily FYK61_19220 PF00072 Response regulator receiver domain FYK61_19225 PF18075 FtsX extracellular domain FYK61_19230 PF00005 ABC transporter FYK61_19235 PF00270 DEAD/DEAH box helicase FYK61_19235 PF12300 ATP-dependent RNA helicase RhlB FYK61_19235 PF00271 Helicase conserved C-terminal domain FYK61_19240 PF00085 Thioredoxin FYK61_19245 PF07497 Rho termination factor, RNA-binding domain FYK61_19245 PF07498 Rho termination factor, N-terminal domain FYK61_19245 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FYK61_19250 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) FYK61_19255 PF03466 LysR substrate binding domain FYK61_19255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_19265 PF03971 Monomeric isocitrate dehydrogenase FYK61_19275 PF01476 LysM domain FYK61_19275 PF04972 BON domain FYK61_19280 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term FYK61_19280 PF14489 QueF-like protein FYK61_19285 PF07687 Peptidase dimerisation domain FYK61_19285 PF01546 Peptidase family M20/M25/M40 FYK61_19290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FYK61_19295 PF00873 AcrB/AcrD/AcrF family FYK61_19300 PF00873 AcrB/AcrD/AcrF family FYK61_19315 PF07063 Domain of unknown function (DUF1338) FYK61_19365 PF13378 Enolase C-terminal domain-like FYK61_19365 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FYK61_19375 PF13520 Amino acid permease FYK61_19390 PF05360 yiaA/B two helix domain FYK61_19395 PF07995 Glucose / Sorbosone dehydrogenase FYK61_19400 PF00933 Glycosyl hydrolase family 3 N terminal domain FYK61_19400 PF14310 Fibronectin type III-like domain FYK61_19400 PF01915 Glycosyl hydrolase family 3 C-terminal domain FYK61_19405 PF02152 Dihydroneopterin aldolase FYK61_19410 PF00814 Glycoprotease family FYK61_19415 PF01165 Ribosomal protein S21 FYK61_19420 PF09424 Yqey-like protein FYK61_19425 PF03631 Virulence factor BrkB FYK61_19430 PF08278 DNA primase DnaG DnaB-binding FYK61_19430 PF08275 DNA primase catalytic core, N-terminal domain FYK61_19430 PF01807 CHC2 zinc finger FYK61_19430 PF10410 DnaB-helicase binding domain of primase FYK61_19435 PF13593 SBF-like CPA transporter family (DUF4137) FYK61_19445 PF01040 UbiA prenyltransferase family FYK61_19470 PF00510 Cytochrome c oxidase subunit III FYK61_19475 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 FYK61_19485 PF00115 Cytochrome C and Quinol oxidase polypeptide I FYK61_19490 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FYK61_19490 PF02790 Cytochrome C oxidase subunit II, transmembrane domain FYK61_19500 PF18327 Proline utilization A proline dehydrogenase N-terminal domain FYK61_19500 PF14850 DNA-binding domain of Proline dehydrogenase FYK61_19500 PF01619 Proline dehydrogenase FYK61_19500 PF00171 Aldehyde dehydrogenase family FYK61_19530 PF00579 tRNA synthetases class I (W and Y) FYK61_19535 PF01551 Peptidase family M23 FYK61_19535 PF04225 Opacity-associated protein A LysM-like domain FYK61_19540 PF03702 Anhydro-N-acetylmuramic acid kinase FYK61_19550 PF07690 Major Facilitator Superfamily FYK61_19560 PF03372 Endonuclease/Exonuclease/phosphatase family FYK61_19565 PF00156 Phosphoribosyl transferase domain FYK61_19575 PF13614 AAA domain FYK61_19580 PF02195 ParB-like nuclease domain FYK61_19580 PF17762 HTH domain found in ParB protein FYK61_19590 PF01370 NAD dependent epimerase/dehydratase family FYK61_19595 PF00535 Glycosyl transferase family 2 FYK61_19605 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FYK61_19605 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FYK61_19605 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FYK61_19605 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FYK61_19610 PF00692 dUTPase FYK61_19615 PF04127 DNA / pantothenate metabolism flavoprotein FYK61_19615 PF02441 Flavoprotein FYK61_19620 PF04002 RadC-like JAB domain FYK61_19625 PF00750 tRNA synthetases class I (R) FYK61_19625 PF05746 DALR anticodon binding domain FYK61_19625 PF03485 Arginyl tRNA synthetase N terminal domain FYK61_19640 PF00106 short chain dehydrogenase FYK61_19645 PF01757 Acyltransferase family FYK61_19650 PF03033 Glycosyltransferase family 28 N-terminal domain FYK61_19655 PF00975 Thioesterase domain FYK61_19655 PF00501 AMP-binding enzyme FYK61_19655 PF13193 AMP-binding enzyme C-terminal domain FYK61_19655 PF00668 Condensation domain FYK61_19655 PF00550 Phosphopantetheine attachment site FYK61_19660 PF17944 Arginine decarboxylase C-terminal helical extension FYK61_19660 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FYK61_19660 PF17810 Arginine decarboxylase helical bundle domain FYK61_19665 PF17284 Spermidine synthase tetramerisation domain FYK61_19690 PF00963 Cohesin domain FYK61_19690 PF00754 F5/8 type C domain FYK61_19690 PF00041 Fibronectin type III domain FYK61_19690 PF02838 Glycosyl hydrolase family 20, domain 2 FYK61_19690 PF07555 beta-N-acetylglucosaminidase FYK61_19695 PF00543 Nitrogen regulatory protein P-II FYK61_19700 PF04380 Membrane fusogenic activity FYK61_19705 PF13335 Magnesium chelatase, subunit ChlI C-terminal FYK61_19705 PF01078 Magnesium chelatase, subunit ChlI FYK61_19720 PF12792 CSS motif domain associated with EAL FYK61_19720 PF00563 EAL domain FYK61_19725 PF00487 Fatty acid desaturase FYK61_19730 PF00111 2Fe-2S iron-sulfur cluster binding domain FYK61_19730 PF00175 Oxidoreductase NAD-binding domain FYK61_19730 PF00970 Oxidoreductase FAD-binding domain FYK61_19735 PF00440 Bacterial regulatory proteins, tetR family FYK61_19745 PF01139 tRNA-splicing ligase RtcB FYK61_19780 PF01370 NAD dependent epimerase/dehydratase family FYK61_19780 PF08338 Domain of unknown function (DUF1731) FYK61_19785 PF00072 Response regulator receiver domain FYK61_19785 PF00486 Transcriptional regulatory protein, C terminal FYK61_19790 PF08521 Two-component sensor kinase N-terminal FYK61_19790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_19790 PF00512 His Kinase A (phospho-acceptor) domain FYK61_19810 PF00595 PDZ domain FYK61_19830 PF01594 AI-2E family transporter FYK61_19835 PF13419 Haloacid dehalogenase-like hydrolase FYK61_19840 PF02789 Cytosol aminopeptidase family, N-terminal domain FYK61_19840 PF00883 Cytosol aminopeptidase family, catalytic domain FYK61_19855 PF00199 Catalase FYK61_19870 PF00196 Bacterial regulatory proteins, luxR family FYK61_19870 PF00072 Response regulator receiver domain FYK61_19880 PF13533 Biotin-lipoyl like FYK61_19885 PF00005 ABC transporter FYK61_19905 PF00892 EamA-like transporter family FYK61_19910 PF00892 EamA-like transporter family FYK61_19930 PF00753 Metallo-beta-lactamase superfamily FYK61_19935 PF00579 tRNA synthetases class I (W and Y) FYK61_19940 PF05532 CsbD-like FYK61_19955 PF00491 Arginase family FYK61_19980 PF02223 Thymidylate kinase FYK61_20000 PF03309 Type III pantothenate kinase FYK61_20005 PF08279 HTH domain FYK61_20005 PF02237 Biotin protein ligase C terminal domain FYK61_20005 PF03099 Biotin/lipoate A/B protein ligase family FYK61_20015 PF06167 Glucose-regulated metallo-peptidase M90 FYK61_20030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_20035 PF00072 Response regulator receiver domain FYK61_20035 PF00486 Transcriptional regulatory protein, C terminal FYK61_20045 PF01207 Dihydrouridine synthase (Dus) FYK61_20060 PF06628 Catalase-related immune-responsive FYK61_20060 PF00199 Catalase FYK61_20065 PF13307 Helicase C-terminal domain FYK61_20065 PF06733 DEAD_2 FYK61_20080 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FYK61_20080 PF08501 Shikimate dehydrogenase substrate binding domain FYK61_20080 PF01488 Shikimate / quinate 5-dehydrogenase FYK61_20095 PF00667 FAD binding domain FYK61_20095 PF00258 Flavodoxin FYK61_20095 PF00175 Oxidoreductase NAD-binding domain FYK61_20105 PF03466 LysR substrate binding domain FYK61_20105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_20120 PF00490 Delta-aminolevulinic acid dehydratase FYK61_20145 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region FYK61_20145 PF00326 Prolyl oligopeptidase family FYK61_20150 PF02798 Glutathione S-transferase, N-terminal domain FYK61_20150 PF00043 Glutathione S-transferase, C-terminal domain FYK61_20170 PF04820 Tryptophan halogenase FYK61_20185 PF00005 ABC transporter FYK61_20195 PF01381 Helix-turn-helix FYK61_20205 PF01229 Glycosyl hydrolases family 39 FYK61_20210 PF02583 Metal-sensitive transcriptional repressor FYK61_20215 PF01545 Cation efflux family FYK61_20225 PF00593 TonB dependent receptor FYK61_20225 PF07715 TonB-dependent Receptor Plug Domain FYK61_20235 PF12833 Helix-turn-helix domain FYK61_20235 PF01965 DJ-1/PfpI family FYK61_20240 PF00175 Oxidoreductase NAD-binding domain FYK61_20240 PF01383 CpcD/allophycocyanin linker domain FYK61_20245 PF00005 ABC transporter FYK61_20250 PF01061 ABC-2 type transporter FYK61_20255 PF02558 Ketopantoate reductase PanE/ApbA FYK61_20255 PF08546 Ketopantoate reductase PanE/ApbA C terminal FYK61_20285 PF00268 Ribonucleotide reductase, small chain FYK61_20290 PF02867 Ribonucleotide reductase, barrel domain FYK61_20290 PF03477 ATP cone domain FYK61_20290 PF00317 Ribonucleotide reductase, all-alpha domain FYK61_20300 PF13607 Succinyl-CoA ligase like flavodoxin domain FYK61_20300 PF13380 CoA binding domain FYK61_20300 PF00583 Acetyltransferase (GNAT) family FYK61_20305 PF03448 MgtE intracellular N domain FYK61_20305 PF00571 CBS domain FYK61_20305 PF01769 Divalent cation transporter FYK61_20310 PF00194 Eukaryotic-type carbonic anhydrase FYK61_20315 PF02254 TrkA-N domain FYK61_20315 PF00999 Sodium/hydrogen exchanger family FYK61_20320 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain FYK61_20320 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain FYK61_20325 PF00723 Glycosyl hydrolases family 15 FYK61_20340 PF05166 YcgL domain FYK61_20345 PF00109 Beta-ketoacyl synthase, N-terminal domain FYK61_20345 PF02801 Beta-ketoacyl synthase, C-terminal domain FYK61_20355 PF00535 Glycosyl transferase family 2 FYK61_20375 PF05598 Transposase domain (DUF772) FYK61_20375 PF01609 Transposase DDE domain FYK61_20420 PF07977 FabA-like domain FYK61_20425 PF01553 Acyltransferase FYK61_20435 PF00550 Phosphopantetheine attachment site FYK61_20440 PF04820 Tryptophan halogenase FYK61_20460 PF00326 Prolyl oligopeptidase family FYK61_20460 PF07676 WD40-like Beta Propeller Repeat FYK61_20475 PF01218 Coproporphyrinogen III oxidase FYK61_20480 PF00476 DNA polymerase family A FYK61_20480 PF01612 3'-5' exonuclease FYK61_20480 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FYK61_20480 PF01367 5'-3' exonuclease, C-terminal SAM fold FYK61_20490 PF06812 ImpA, N-terminal, type VI secretion system FYK61_20510 PF00069 Protein kinase domain FYK61_20525 PF06744 Type VI secretion protein IcmF C-terminal FYK61_20525 PF06761 Intracellular multiplication and human macrophage-killing FYK61_20525 PF14331 ImcF-related N-terminal domain FYK61_20535 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE FYK61_20550 PF04717 Type VI secretion system, phage-baseplate injector FYK61_20565 PF00069 Protein kinase domain FYK61_20565 PF03793 PASTA domain FYK61_20575 PF04542 Sigma-70 region 2 FYK61_20575 PF08281 Sigma-70, region 4 FYK61_20590 PF00328 Histidine phosphatase superfamily (branch 2) FYK61_20625 PF07724 AAA domain (Cdc48 subfamily) FYK61_20625 PF17871 AAA lid domain FYK61_20625 PF00004 ATPase family associated with various cellular activities (AAA) FYK61_20625 PF10431 C-terminal, D2-small domain, of ClpB protein FYK61_20635 PF05947 Type VI secretion system, TssF FYK61_20640 PF04965 Gene 25-like lysozyme FYK61_20645 PF07024 ImpE protein FYK61_20650 PF05638 Type VI secretion system effector, Hcp FYK61_20655 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath FYK61_20660 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 FYK61_20675 PF14602 Hexapeptide repeat of succinyl-transferase FYK61_20675 PF12464 Maltose acetyltransferase FYK61_20685 PF13361 UvrD-like helicase C-terminal domain FYK61_20685 PF00580 UvrD/REP helicase N-terminal domain FYK61_20695 PF13091 PLD-like domain FYK61_20695 PF13396 Phospholipase_D-nuclease N-terminal FYK61_20700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_20700 PF03466 LysR substrate binding domain FYK61_20705 PF03737 Aldolase/RraA FYK61_20710 PF04303 PrpF protein FYK61_20715 PF04909 Amidohydrolase FYK61_20720 PF00471 Ribosomal protein L33 FYK61_20725 PF00830 Ribosomal L28 family FYK61_20730 PF00873 AcrB/AcrD/AcrF family FYK61_20745 PF13533 Biotin-lipoyl like FYK61_20765 PF02527 rRNA small subunit methyltransferase G FYK61_20770 PF16655 PhoD-like phosphatase, N-terminal domain FYK61_20770 PF09423 PhoD-like phosphatase FYK61_20775 PF09423 PhoD-like phosphatase FYK61_20775 PF16655 PhoD-like phosphatase, N-terminal domain FYK61_20780 PF01648 4'-phosphopantetheinyl transferase superfamily FYK61_20785 PF04226 Transglycosylase associated protein FYK61_20795 PF03372 Endonuclease/Exonuclease/phosphatase family FYK61_20800 PF00480 ROK family FYK61_20810 PF09312 SurA N-terminal domain FYK61_20810 PF00639 PPIC-type PPIASE domain FYK61_20820 PF00474 Sodium:solute symporter family FYK61_20825 PF04341 Protein of unknown function, DUF485 FYK61_20835 PF16177 Acetyl-coenzyme A synthetase N-terminus FYK61_20835 PF13193 AMP-binding enzyme C-terminal domain FYK61_20835 PF00501 AMP-binding enzyme FYK61_20840 PF00196 Bacterial regulatory proteins, luxR family FYK61_20840 PF00072 Response regulator receiver domain FYK61_20860 PF04616 Glycosyl hydrolases family 43 FYK61_20860 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain FYK61_20870 PF00248 Aldo/keto reductase family FYK61_20885 PF01557 Fumarylacetoacetate (FAA) hydrolase family FYK61_20890 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FYK61_20890 PF13378 Enolase C-terminal domain-like FYK61_20895 PF05336 L-rhamnose mutarotase FYK61_20900 PF07690 Major Facilitator Superfamily FYK61_20905 PF09339 IclR helix-turn-helix domain FYK61_20905 PF01614 Bacterial transcriptional regulator FYK61_20910 PF02659 Putative manganese efflux pump FYK61_20915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_20915 PF00512 His Kinase A (phospho-acceptor) domain FYK61_20925 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain FYK61_20925 PF06165 Glycosyltransferase family 36 FYK61_20940 PF13570 PQQ-like domain FYK61_20940 PF13360 PQQ-like domain FYK61_20940 PF01011 PQQ enzyme repeat FYK61_20965 PF04357 TamB, inner membrane protein subunit of TAM complex FYK61_20970 PF01103 Surface antigen FYK61_20970 PF17243 POTRA domain TamA domain 1 FYK61_20995 PF03412 Peptidase C39 family FYK61_20995 PF00664 ABC transporter transmembrane region FYK61_20995 PF00005 ABC transporter FYK61_21000 PF05746 DALR anticodon binding domain FYK61_21000 PF02092 Glycyl-tRNA synthetase beta subunit FYK61_21005 PF02091 Glycyl-tRNA synthetase alpha subunit FYK61_21010 PF00437 Type II/IV secretion system protein FYK61_21010 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FYK61_21015 PF00958 GMP synthase C terminal domain FYK61_21015 PF00117 Glutamine amidotransferase class-I FYK61_21025 PF00902 Sec-independent protein translocase protein (TatC) FYK61_21030 PF02416 mttA/Hcf106 family FYK61_21035 PF02416 mttA/Hcf106 family FYK61_21045 PF00762 Ferrochelatase FYK61_21050 PF12697 Alpha/beta hydrolase family FYK61_21060 PF04381 Putative exonuclease, RdgC FYK61_21065 PF01171 PP-loop family FYK61_21075 PF00356 Bacterial regulatory proteins, lacI family FYK61_21080 PF07477 Glycosyl hydrolase family 67 C-terminus FYK61_21080 PF07488 Glycosyl hydrolase family 67 middle domain FYK61_21080 PF03648 Glycosyl hydrolase family 67 N-terminus FYK61_21090 PF13378 Enolase C-terminal domain-like FYK61_21090 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FYK61_21095 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain FYK61_21095 PF04616 Glycosyl hydrolases family 43 FYK61_21100 PF01915 Glycosyl hydrolase family 3 C-terminal domain FYK61_21100 PF07691 PA14 domain FYK61_21100 PF00933 Glycosyl hydrolase family 3 N terminal domain FYK61_21100 PF14310 Fibronectin type III-like domain FYK61_21105 PF08125 Mannitol dehydrogenase C-terminal domain FYK61_21105 PF01232 Mannitol dehydrogenase Rossmann domain FYK61_21140 PF00171 Aldehyde dehydrogenase family FYK61_21155 PF00202 Aminotransferase class-III FYK61_21165 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FYK61_21165 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FYK61_21180 PF08450 SMP-30/Gluconolactonase/LRE-like region FYK61_21185 PF00331 Glycosyl hydrolase family 10 FYK61_21190 PF02836 Glycosyl hydrolases family 2, TIM barrel domain FYK61_21190 PF02837 Glycosyl hydrolases family 2, sugar binding domain FYK61_21190 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 FYK61_21190 PF00703 Glycosyl hydrolases family 2 FYK61_21190 PF16355 Domain of unknown function (DUF4982) FYK61_21195 PF02614 Glucuronate isomerase FYK61_21200 PF03422 Carbohydrate binding module (family 6) FYK61_21200 PF00331 Glycosyl hydrolase family 10 FYK61_21200 PF00553 Cellulose binding domain FYK61_21210 PF00331 Glycosyl hydrolase family 10 FYK61_21210 PF00553 Cellulose binding domain FYK61_21210 PF03422 Carbohydrate binding module (family 6) FYK61_21230 PF04616 Glycosyl hydrolases family 43 FYK61_21290 PF00107 Zinc-binding dehydrogenase FYK61_21290 PF00698 Acyl transferase domain FYK61_21290 PF14765 Polyketide synthase dehydratase FYK61_21290 PF00550 Phosphopantetheine attachment site FYK61_21290 PF08659 KR domain FYK61_21290 PF08240 Alcohol dehydrogenase GroES-like domain FYK61_21290 PF02801 Beta-ketoacyl synthase, C-terminal domain FYK61_21290 PF00109 Beta-ketoacyl synthase, N-terminal domain FYK61_21290 PF16197 Ketoacyl-synthetase C-terminal extension FYK61_21295 PF01553 Acyltransferase FYK61_21305 PF00356 Bacterial regulatory proteins, lacI family FYK61_21320 PF04820 Tryptophan halogenase FYK61_21325 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family FYK61_21330 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) FYK61_21335 PF04337 Protein of unknown function, DUF480 FYK61_21345 PF13302 Acetyltransferase (GNAT) domain FYK61_21350 PF00580 UvrD/REP helicase N-terminal domain FYK61_21350 PF13361 UvrD-like helicase C-terminal domain FYK61_21355 PF00265 Thymidine kinase FYK61_21360 PF00512 His Kinase A (phospho-acceptor) domain FYK61_21360 PF08446 PAS fold FYK61_21360 PF00360 Phytochrome region FYK61_21360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FYK61_21360 PF01590 GAF domain FYK61_21365 PF04349 Periplasmic glucan biosynthesis protein, MdoG FYK61_21375 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FYK61_21375 PF06827 Zinc finger found in FPG and IleRS FYK61_21375 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FYK61_21405 PF03594 Benzoate membrane transport protein FYK61_21410 PF00360 Phytochrome region FYK61_21410 PF01590 GAF domain FYK61_21410 PF08446 PAS fold FYK61_21410 PF13426 PAS domain FYK61_21415 PF01126 Heme oxygenase FYK61_21420 PF07690 Major Facilitator Superfamily FYK61_21425 PF01263 Aldose 1-epimerase FYK61_21435 PF02810 SEC-C motif FYK61_21440 PF01925 Sulfite exporter TauE/SafE FYK61_21465 PF01227 GTP cyclohydrolase I FYK61_21475 PF07869 Protein of unknown function (DUF1656) FYK61_21480 PF00529 HlyD membrane-fusion protein of T1SS FYK61_21480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FYK61_21485 PF02321 Outer membrane efflux protein FYK61_21490 PF04632 Fusaric acid resistance protein family FYK61_21495 PF00083 Sugar (and other) transporter FYK61_21505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FYK61_21505 PF03466 LysR substrate binding domain FYK61_21510 PF00106 short chain dehydrogenase FYK61_21575 PF00849 RNA pseudouridylate synthase FYK61_21645 PF13538 UvrD-like helicase C-terminal domain FYK61_21650 PF13361 UvrD-like helicase C-terminal domain FYK61_21650 PF00580 UvrD/REP helicase N-terminal domain FYK61_21650 PF12705 PD-(D/E)XK nuclease superfamily FYK61_21655 PF17946 RecC C-terminal domain FYK61_21690 PF00005 ABC transporter FYK61_21695 PF02405 Permease MlaE FYK61_21700 PF02470 MlaD protein FYK61_21705 PF05494 MlaC protein FYK61_21715 PF04333 MlaA lipoprotein FYK61_21725 PF00255 Glutathione peroxidase FYK61_21735 PF02646 RmuC family FYK61_21750 PF00043 Glutathione S-transferase, C-terminal domain FYK61_21750 PF13417 Glutathione S-transferase, N-terminal domain FYK61_21760 PF13520 Amino acid permease FYK61_21765 PF17678 Glycosyl hydrolase family 92 N-terminal domain FYK61_21765 PF07971 Glycosyl hydrolase family 92 FYK61_21770 PF10947 Protein of unknown function (DUF2628) FYK61_21775 PF00990 Diguanylate cyclase, GGDEF domain FYK61_21780 PF05651 Putative sugar diacid recognition FYK61_21780 PF13556 PucR C-terminal helix-turn-helix domain FYK61_21780 PF17853 GGDEF-like domain FYK61_21785 PF02595 Glycerate kinase family FYK61_21790 PF07690 Major Facilitator Superfamily FYK61_21805 PF10672 S-adenosylmethionine-dependent methyltransferase FYK61_21805 PF17785 PUA-like domain FYK61_21810 PF03741 Integral membrane protein TerC family FYK61_21815 PF01694 Rhomboid family FYK61_21820 PF03009 Glycerophosphoryl diester phosphodiesterase family FYK61_21830 PF01569 PAP2 superfamily FYK61_21835 PF10396 GTP-binding protein TrmE N-terminus FYK61_21835 PF12631 MnmE helical domain FYK61_21835 PF01926 50S ribosome-binding GTPase FYK61_21845 PF02096 60Kd inner membrane protein FYK61_21845 PF14849 YidC periplasmic domain FYK61_21850 PF00825 Ribonuclease P FYK61_21855 PF00468 Ribosomal protein L34