locus-tag class description AC028_00005 PF01339 CheB methylesterase AC028_00005 PF00072 Response regulator receiver domain AC028_00010 PF03705 CheR methyltransferase, all-alpha domain AC028_00010 PF01739 CheR methyltransferase, SAM binding domain AC028_00015 PF01339 CheB methylesterase AC028_00015 PF00072 Response regulator receiver domain AC028_00020 PF13091 PLD-like domain AC028_00025 PF05649 Peptidase family M13 AC028_00025 PF01431 Peptidase family M13 AC028_00035 PF00300 Histidine phosphatase superfamily (branch 1) AC028_00040 PF04493 Endonuclease V AC028_00050 PF05726 Pirin C-terminal cupin domain AC028_00050 PF02678 Pirin AC028_00065 PF02678 Pirin AC028_00065 PF05726 Pirin C-terminal cupin domain AC028_00070 PF13722 5TM C-terminal transporter carbon starvation CstA AC028_00070 PF02554 Carbon starvation protein CstA AC028_00075 PF04328 Selenoprotein, putative AC028_00090 PF12796 Ankyrin repeats (3 copies) AC028_00125 PF13478 XdhC Rossmann domain AC028_00125 PF02625 XdhC and CoxI family AC028_00130 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AC028_00130 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AC028_00135 PF00941 FAD binding domain in molybdopterin dehydrogenase AC028_00135 PF03450 CO dehydrogenase flavoprotein C-terminal domain AC028_00140 PF01799 [2Fe-2S] binding domain AC028_00140 PF00111 2Fe-2S iron-sulfur cluster binding domain AC028_00140 PF10518 TAT (twin-arginine translocation) pathway signal sequence AC028_00145 PF00550 Phosphopantetheine attachment site AC028_00145 PF08659 KR domain AC028_00145 PF00109 Beta-ketoacyl synthase, N-terminal domain AC028_00145 PF14765 Polyketide synthase dehydratase AC028_00145 PF08240 Alcohol dehydrogenase GroES-like domain AC028_00145 PF16197 Ketoacyl-synthetase C-terminal extension AC028_00145 PF00698 Acyl transferase domain AC028_00145 PF02801 Beta-ketoacyl synthase, C-terminal domain AC028_00145 PF00107 Zinc-binding dehydrogenase AC028_00150 PF00563 EAL domain AC028_00150 PF01590 GAF domain AC028_00150 PF00990 Diguanylate cyclase, GGDEF domain AC028_00150 PF00360 Phytochrome region AC028_00155 PF00436 Single-strand binding protein family AC028_00160 PF00348 Polyprenyl synthetase AC028_00170 PF08245 Mur ligase middle domain AC028_00170 PF02875 Mur ligase family, glutamate ligase domain AC028_00185 PF01842 ACT domain AC028_00185 PF00696 Amino acid kinase family AC028_00190 PF02567 Phenazine biosynthesis-like protein AC028_00195 PF02567 Phenazine biosynthesis-like protein AC028_00205 PF02566 OsmC-like protein AC028_00210 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AC028_00210 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AC028_00215 PF03652 Holliday junction resolvase AC028_00220 PF02622 Uncharacterized ACR, COG1678 AC028_00230 PF13302 Acetyltransferase (GNAT) domain AC028_00230 PF13673 Acetyltransferase (GNAT) domain AC028_00230 PF00958 GMP synthase C terminal domain AC028_00230 PF00117 Glutamine amidotransferase class-I AC028_00230 PF03352 Methyladenine glycosylase AC028_00245 PF00437 Type II/IV secretion system protein AC028_00250 PF00437 Type II/IV secretion system protein AC028_00255 PF01168 Alanine racemase, N-terminal domain AC028_00260 PF03807 NADP oxidoreductase coenzyme F420-dependent AC028_00260 PF14748 Pyrroline-5-carboxylate reductase dimerisation AC028_00270 PF01551 Peptidase family M23 AC028_00290 PF01965 DJ-1/PfpI family AC028_00300 PF02082 Transcriptional regulator AC028_00305 PF01458 Uncharacterized protein family (UPF0051) AC028_00310 PF00005 ABC transporter AC028_00315 PF01458 Uncharacterized protein family (UPF0051) AC028_00320 PF00266 Aminotransferase class-V AC028_00330 PF00355 Rieske [2Fe-2S] domain AC028_00335 PF00593 TonB dependent receptor AC028_00335 PF07715 TonB-dependent Receptor Plug Domain AC028_00340 PF18331 PKHD-type hydroxylase C-terminal domain AC028_00340 PF13640 2OG-Fe(II) oxygenase superfamily AC028_00365 PF02424 ApbE family AC028_00370 PF00175 Oxidoreductase NAD-binding domain AC028_00370 PF00258 Flavodoxin AC028_00370 PF00667 FAD binding domain AC028_00395 PF01636 Phosphotransferase enzyme family AC028_00400 PF00483 Nucleotidyl transferase AC028_00405 PF00308 Bacterial dnaA protein AC028_00410 PF01594 AI-2E family transporter AC028_00420 PF02769 AIR synthase related protein, C-terminal domain AC028_00420 PF00586 AIR synthase related protein, N-terminal domain AC028_00430 PF00551 Formyl transferase AC028_00450 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AC028_00455 PF01722 BolA-like protein AC028_00460 PF00571 CBS domain AC028_00460 PF01380 SIS domain AC028_00475 PF03968 OstA-like protein AC028_00480 PF00005 ABC transporter AC028_00485 PF04963 Sigma-54 factor, core binding domain AC028_00485 PF00309 Sigma-54 factor, Activator interacting domain (AID) AC028_00485 PF04552 Sigma-54, DNA binding domain AC028_00490 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AC028_00495 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AC028_00500 PF07475 HPr Serine kinase C-terminal domain AC028_00500 PF02603 HPr Serine kinase N terminus AC028_00505 PF03668 P-loop ATPase protein family AC028_00515 PF00381 PTS HPr component phosphorylation site AC028_00520 PF05524 PEP-utilising enzyme, N-terminal AC028_00520 PF02896 PEP-utilising enzyme, TIM barrel domain AC028_00520 PF00391 PEP-utilising enzyme, mobile domain AC028_00525 PF01769 Divalent cation transporter AC028_00525 PF00571 CBS domain AC028_00525 PF03448 MgtE intracellular N domain AC028_00530 PF00756 Putative esterase AC028_00535 PF02322 Cytochrome bd terminal oxidase subunit II AC028_00540 PF01654 Cytochrome bd terminal oxidase subunit I AC028_00550 PF00324 Amino acid permease AC028_00555 PF00544 Pectate lyase AC028_00560 PF00561 alpha/beta hydrolase fold AC028_00570 PF00196 Bacterial regulatory proteins, luxR family AC028_00575 PF00324 Amino acid permease AC028_00610 PF12706 Beta-lactamase superfamily domain AC028_00615 PF04820 Tryptophan halogenase AC028_00645 PF09278 MerR, DNA binding AC028_00645 PF00376 MerR family regulatory protein AC028_00650 PF07690 Major Facilitator Superfamily AC028_00660 PF03738 Glutathionylspermidine synthase preATP-grasp AC028_00685 PF04012 PspA/IM30 family AC028_00695 PF01243 Pyridoxamine 5'-phosphate oxidase AC028_00695 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AC028_00700 PF01202 Shikimate kinase AC028_00705 PF01761 3-dehydroquinate synthase AC028_00715 PF01208 Uroporphyrinogen decarboxylase (URO-D) AC028_00720 PF07690 Major Facilitator Superfamily AC028_00725 PF00072 Response regulator receiver domain AC028_00725 PF01627 Hpt domain AC028_00725 PF00512 His Kinase A (phospho-acceptor) domain AC028_00725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_00725 PF00672 HAMP domain AC028_00725 PF17149 Periplasmic sensor domain found in signal transduction proteins AC028_00735 PF13333 Integrase core domain AC028_00735 PF13276 HTH-like domain AC028_00735 PF00665 Integrase core domain AC028_00740 PF01527 Transposase AC028_00755 PF01627 Hpt domain AC028_00755 PF00512 His Kinase A (phospho-acceptor) domain AC028_00755 PF00072 Response regulator receiver domain AC028_00755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_00760 PF04264 YceI-like domain AC028_00780 PF03313 Serine dehydratase alpha chain AC028_00780 PF03315 Serine dehydratase beta chain AC028_00785 PF12697 Alpha/beta hydrolase family AC028_00795 PF03447 Homoserine dehydrogenase, NAD binding domain AC028_00795 PF00742 Homoserine dehydrogenase AC028_00795 PF00696 Amino acid kinase family AC028_00800 PF01053 Cys/Met metabolism PLP-dependent enzyme AC028_00805 PF00561 alpha/beta hydrolase fold AC028_00810 PF01476 LysM domain AC028_00810 PF08525 Opacity-associated protein A N-terminal motif AC028_00810 PF01551 Peptidase family M23 AC028_00815 PF00009 Elongation factor Tu GTP binding domain AC028_00815 PF16658 Class II release factor RF3, C-terminal domain AC028_00820 PF03006 Haemolysin-III related AC028_00825 PF05170 AsmA family AC028_00830 PF00571 CBS domain AC028_00830 PF00478 IMP dehydrogenase / GMP reductase domain AC028_00835 PF00535 Glycosyl transferase family 2 AC028_00840 PF00912 Transglycosylase AC028_00845 PF01430 Hsp33 protein AC028_00855 PF00593 TonB dependent receptor AC028_00855 PF07715 TonB-dependent Receptor Plug Domain AC028_00860 PF00440 Bacterial regulatory proteins, tetR family AC028_00865 PF00561 alpha/beta hydrolase fold AC028_00870 PF09317 Domain of unknown function (DUF1974) AC028_00870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_00870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_00900 PF01597 Glycine cleavage H-protein AC028_00905 PF01571 Aminomethyltransferase folate-binding domain AC028_00905 PF08669 Glycine cleavage T-protein C-terminal barrel domain AC028_00915 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AC028_00920 PF03819 MazG nucleotide pyrophosphohydrolase domain AC028_00925 PF00459 Inositol monophosphatase family AC028_00930 PF00293 NUDIX domain AC028_00935 PF00202 Aminotransferase class-III AC028_00940 PF04452 RNA methyltransferase AC028_00945 PF02685 Glucokinase AC028_00960 PF00704 Glycosyl hydrolases family 18 AC028_00960 PF01476 LysM domain AC028_00965 PF00728 Glycosyl hydrolase family 20, catalytic domain AC028_00965 PF07691 PA14 domain AC028_00965 PF02838 Glycosyl hydrolase family 20, domain 2 AC028_00975 PF01915 Glycosyl hydrolase family 3 C-terminal domain AC028_00975 PF00933 Glycosyl hydrolase family 3 N terminal domain AC028_00975 PF14310 Fibronectin type III-like domain AC028_00975 PF07691 PA14 domain AC028_00995 PF02056 Family 4 glycosyl hydrolase AC028_00995 PF11975 Family 4 glycosyl hydrolase C-terminal domain AC028_01005 PF17678 Glycosyl hydrolase family 92 N-terminal domain AC028_01005 PF07971 Glycosyl hydrolase family 92 AC028_01010 PF01301 Glycosyl hydrolases family 35 AC028_01040 PF03932 CutC family AC028_01045 PF01112 Asparaginase AC028_01060 PF13302 Acetyltransferase (GNAT) domain AC028_01075 PF00072 Response regulator receiver domain AC028_01075 PF01627 Hpt domain AC028_01075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_01075 PF01584 CheW-like domain AC028_01080 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AC028_01080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_01085 PF01584 CheW-like domain AC028_01090 PF00072 Response regulator receiver domain AC028_01095 PF00072 Response regulator receiver domain AC028_01100 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AC028_01100 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AC028_01115 PF00814 Glycoprotease family AC028_01120 PF13307 Helicase C-terminal domain AC028_01120 PF04851 Type III restriction enzyme, res subunit AC028_01130 PF00905 Penicillin binding protein transpeptidase domain AC028_01130 PF00912 Transglycosylase AC028_01130 PF14814 Bifunctional transglycosylase second domain AC028_01135 PF01501 Glycosyl transferase family 8 AC028_01135 PF00535 Glycosyl transferase family 2 AC028_01145 PF02824 TGS domain AC028_01145 PF13291 ACT domain AC028_01145 PF04607 Region found in RelA / SpoT proteins AC028_01150 PF12706 Beta-lactamase superfamily domain AC028_01155 PF03070 TENA/THI-4/PQQC family AC028_01160 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AC028_01165 PF13186 Iron-sulfur cluster-binding domain AC028_01165 PF04055 Radical SAM superfamily AC028_01180 PF02685 Glucokinase AC028_01190 PF11898 Domain of unknown function (DUF3418) AC028_01190 PF00270 DEAD/DEAH box helicase AC028_01190 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AC028_01190 PF04408 Helicase associated domain (HA2) AC028_01190 PF00271 Helicase conserved C-terminal domain AC028_01195 PF00210 Ferritin-like domain AC028_01200 PF09382 RQC domain AC028_01200 PF00270 DEAD/DEAH box helicase AC028_01200 PF00271 Helicase conserved C-terminal domain AC028_01200 PF16124 RecQ zinc-binding AC028_01200 PF00570 HRDC domain AC028_01235 PF02203 Tar ligand binding domain homologue AC028_01235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_01235 PF00672 HAMP domain AC028_01255 PF13426 PAS domain AC028_01255 PF13581 Histidine kinase-like ATPase domain AC028_01255 PF07536 HWE histidine kinase AC028_01260 PF06508 Queuosine biosynthesis protein QueC AC028_01270 PF04055 Radical SAM superfamily AC028_01280 PF00691 OmpA family AC028_01285 PF07676 WD40-like Beta Propeller Repeat AC028_01285 PF04052 TolB amino-terminal domain AC028_01295 PF02472 Biopolymer transport protein ExbD/TolR AC028_01300 PF01618 MotA/TolQ/ExbB proton channel family AC028_01305 PF03061 Thioesterase superfamily AC028_01310 PF05496 Holliday junction DNA helicase RuvB P-loop domain AC028_01310 PF05491 RuvB C-terminal winged helix domain AC028_01310 PF17864 RuvB AAA lid domain AC028_01315 PF02705 K+ potassium transporter AC028_01320 PF01330 RuvA N terminal domain AC028_01320 PF07499 RuvA, C-terminal domain AC028_01325 PF02075 Crossover junction endodeoxyribonuclease RuvC AC028_01330 PF01709 Transcriptional regulator AC028_01345 PF00152 tRNA synthetases class II (D, K and N) AC028_01345 PF01336 OB-fold nucleic acid binding domain AC028_01345 PF02938 GAD domain AC028_01360 PF07690 Major Facilitator Superfamily AC028_01370 PF04185 Phosphoesterase family AC028_01370 PF05506 Domain of unknown function (DUF756) AC028_01395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_01395 PF03466 LysR substrate binding domain AC028_01405 PF00005 ABC transporter AC028_01405 PF12848 ABC transporter AC028_01410 PF07715 TonB-dependent Receptor Plug Domain AC028_01410 PF00593 TonB dependent receptor AC028_01420 PF07715 TonB-dependent Receptor Plug Domain AC028_01420 PF00593 TonB dependent receptor AC028_01425 PF07715 TonB-dependent Receptor Plug Domain AC028_01425 PF00593 TonB dependent receptor AC028_01430 PF00067 Cytochrome P450 AC028_01435 PF00999 Sodium/hydrogen exchanger family AC028_01435 PF02254 TrkA-N domain AC028_01445 PF07715 TonB-dependent Receptor Plug Domain AC028_01445 PF07660 Secretin and TonB N terminus short domain AC028_01445 PF00593 TonB dependent receptor AC028_01455 PF04183 IucA / IucC family AC028_01455 PF06276 Ferric iron reductase FhuF-like transporter AC028_01460 PF07690 Major Facilitator Superfamily AC028_01470 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AC028_01470 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AC028_01490 PF01527 Transposase AC028_01495 PF00665 Integrase core domain AC028_01495 PF13333 Integrase core domain AC028_01495 PF13276 HTH-like domain AC028_01505 PF02654 Cobalamin-5-phosphate synthase AC028_01515 PF02277 Phosphoribosyltransferase AC028_01520 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AC028_01525 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AC028_01525 PF07685 CobB/CobQ-like glutamine amidotransferase domain AC028_01530 PF00155 Aminotransferase class I and II AC028_01535 PF03186 CobD/Cbib protein AC028_01535 PF17113 Regulatory signalling modulator protein AmpE AC028_01540 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AC028_01540 PF12557 Cob(I)alamin adenosyltransferase N terminal AC028_01560 PF07715 TonB-dependent Receptor Plug Domain AC028_01560 PF00593 TonB dependent receptor AC028_01570 PF10431 C-terminal, D2-small domain, of ClpB protein AC028_01570 PF17871 AAA lid domain AC028_01570 PF02861 Clp amino terminal domain, pathogenicity island component AC028_01570 PF07724 AAA domain (Cdc48 subfamily) AC028_01570 PF00004 ATPase family associated with various cellular activities (AAA) AC028_01575 PF00005 ABC transporter AC028_01580 PF00528 Binding-protein-dependent transport system inner membrane component AC028_01590 PF00248 Aldo/keto reductase family AC028_01605 PF00593 TonB dependent receptor AC028_01605 PF07715 TonB-dependent Receptor Plug Domain AC028_01610 PF01541 GIY-YIG catalytic domain AC028_01645 PF00593 TonB dependent receptor AC028_01645 PF07715 TonB-dependent Receptor Plug Domain AC028_01650 PF02358 Trehalose-phosphatase AC028_01655 PF00723 Glycosyl hydrolases family 15 AC028_01660 PF00982 Glycosyltransferase family 20 AC028_01665 PF01011 PQQ enzyme repeat AC028_01670 PF00672 HAMP domain AC028_01670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_01670 PF02203 Tar ligand binding domain homologue AC028_01675 PF04134 Protein of unknown function, DUF393 AC028_01690 PF00849 RNA pseudouridylate synthase AC028_01695 PF13525 Outer membrane lipoprotein AC028_01705 PF02540 NAD synthase AC028_01705 PF00795 Carbon-nitrogen hydrolase AC028_01715 PF00549 CoA-ligase AC028_01715 PF02629 CoA binding domain AC028_01720 PF00549 CoA-ligase AC028_01720 PF08442 ATP-grasp domain AC028_01725 PF00512 His Kinase A (phospho-acceptor) domain AC028_01725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_01730 PF02954 Bacterial regulatory protein, Fis family AC028_01730 PF00158 Sigma-54 interaction domain AC028_01730 PF00072 Response regulator receiver domain AC028_01735 PF00437 Type II/IV secretion system protein AC028_01735 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AC028_01740 PF07963 Prokaryotic N-terminal methylation motif AC028_01740 PF00114 Pilin (bacterial filament) AC028_01750 PF00482 Type II secretion system (T2SS), protein F AC028_01755 PF06750 Bacterial Peptidase A24 N-terminal domain AC028_01755 PF01478 Type IV leader peptidase family AC028_01760 PF01121 Dephospho-CoA kinase AC028_01765 PF05598 Transposase domain (DUF772) AC028_01765 PF01609 Transposase DDE domain AC028_01770 PF13683 Integrase core domain AC028_01770 PF13276 HTH-like domain AC028_01775 PF01527 Transposase AC028_01785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_01785 PF11808 Phosphate regulon sensor protein PhoR AC028_01785 PF00989 PAS fold AC028_01785 PF00512 His Kinase A (phospho-acceptor) domain AC028_01790 PF00072 Response regulator receiver domain AC028_01790 PF00486 Transcriptional regulatory protein, C terminal AC028_01800 PF18030 RimK PreATP-grasp domain AC028_01800 PF08443 RimK-like ATP-grasp domain AC028_01805 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AC028_01805 PF00128 Alpha amylase, catalytic domain AC028_01840 PF13683 Integrase core domain AC028_01840 PF13276 HTH-like domain AC028_01845 PF01527 Transposase AC028_01860 PF00657 GDSL-like Lipase/Acylhydrolase AC028_01860 PF03797 Autotransporter beta-domain AC028_01870 PF05690 Thiazole biosynthesis protein ThiG AC028_01875 PF02390 Putative methyltransferase AC028_01880 PF03600 Citrate transporter AC028_01880 PF02080 TrkA-C domain AC028_01900 PF01557 Fumarylacetoacetate (FAA) hydrolase family AC028_01905 PF01741 Large-conductance mechanosensitive channel, MscL AC028_01920 PF00356 Bacterial regulatory proteins, lacI family AC028_01930 PF02837 Glycosyl hydrolases family 2, sugar binding domain AC028_01930 PF00703 Glycosyl hydrolases family 2 AC028_01930 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AC028_01935 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AC028_01935 PF14508 Glycosyl-hydrolase 97 N-terminal AC028_01935 PF10566 Glycoside hydrolase 97 AC028_01945 PF00135 Carboxylesterase family AC028_01950 PF08032 RNA 2'-O ribose methyltransferase substrate binding AC028_01950 PF00588 SpoU rRNA Methylase family AC028_01960 PF11838 ERAP1-like C-terminal domain AC028_01960 PF01433 Peptidase family M1 domain AC028_01985 PF01527 Transposase AC028_01990 PF13683 Integrase core domain AC028_01990 PF13276 HTH-like domain AC028_02005 PF00665 Integrase core domain AC028_02005 PF13276 HTH-like domain AC028_02005 PF13333 Integrase core domain AC028_02010 PF01527 Transposase AC028_02020 PF05598 Transposase domain (DUF772) AC028_02020 PF01609 Transposase DDE domain AC028_02025 PF13683 Integrase core domain AC028_02025 PF13276 HTH-like domain AC028_02030 PF01527 Transposase AC028_02045 PF00873 AcrB/AcrD/AcrF family AC028_02050 PF00529 HlyD membrane-fusion protein of T1SS AC028_02050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC028_02055 PF00009 Elongation factor Tu GTP binding domain AC028_02060 PF01507 Phosphoadenosine phosphosulfate reductase family AC028_02065 PF00667 FAD binding domain AC028_02065 PF00258 Flavodoxin AC028_02065 PF00175 Oxidoreductase NAD-binding domain AC028_02070 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AC028_02070 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AC028_02075 PF01507 Phosphoadenosine phosphosulfate reductase family AC028_02095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_02095 PF01627 Hpt domain AC028_02095 PF00072 Response regulator receiver domain AC028_02095 PF00512 His Kinase A (phospho-acceptor) domain AC028_02105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_02105 PF03466 LysR substrate binding domain AC028_02110 PF14824 Sirohaem biosynthesis protein central AC028_02110 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AC028_02110 PF10414 Sirohaem synthase dimerisation region AC028_02115 PF00291 Pyridoxal-phosphate dependent enzyme AC028_02130 PF00274 Fructose-bisphosphate aldolase class-I AC028_02135 PF00224 Pyruvate kinase, barrel domain AC028_02135 PF02887 Pyruvate kinase, alpha/beta domain AC028_02145 PF00162 Phosphoglycerate kinase AC028_02165 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AC028_02165 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AC028_02175 PF03922 OmpW family AC028_02190 PF04273 Putative phosphatase (DUF442) AC028_02190 PF00753 Metallo-beta-lactamase superfamily AC028_02200 PF00528 Binding-protein-dependent transport system inner membrane component AC028_02205 PF00005 ABC transporter AC028_02205 PF03459 TOBE domain AC028_02240 PF03734 L,D-transpeptidase catalytic domain AC028_02240 PF01476 LysM domain AC028_02245 PF01551 Peptidase family M23 AC028_02245 PF04225 Opacity-associated protein A LysM-like domain AC028_02250 PF07715 TonB-dependent Receptor Plug Domain AC028_02250 PF00593 TonB dependent receptor AC028_02270 PF01527 Transposase AC028_02275 PF00665 Integrase core domain AC028_02275 PF13276 HTH-like domain AC028_02275 PF13333 Integrase core domain AC028_02285 PF05598 Transposase domain (DUF772) AC028_02285 PF01609 Transposase DDE domain AC028_02290 PF01609 Transposase DDE domain AC028_02290 PF05598 Transposase domain (DUF772) AC028_02295 PF00456 Transketolase, thiamine diphosphate binding domain AC028_02295 PF02779 Transketolase, pyrimidine binding domain AC028_02295 PF02780 Transketolase, C-terminal domain AC028_02310 PF00092 von Willebrand factor type A domain AC028_02310 PF07584 Aerotolerance regulator N-terminal AC028_02330 PF07726 ATPase family associated with various cellular activities (AAA) AC028_02330 PF17863 AAA lid domain AC028_02335 PF11741 AMIN domain AC028_02335 PF00263 Bacterial type II and III secretion system protein AC028_02335 PF07660 Secretin and TonB N terminus short domain AC028_02335 PF03958 Bacterial type II/III secretion system short domain AC028_02360 PF00905 Penicillin binding protein transpeptidase domain AC028_02360 PF17092 Penicillin-binding protein OB-like domain AC028_02360 PF00912 Transglycosylase AC028_02370 PF00285 Citrate synthase, C-terminal domain AC028_02375 PF01197 Ribosomal protein L31 AC028_02380 PF01156 Inosine-uridine preferring nucleoside hydrolase AC028_02385 PF00270 DEAD/DEAH box helicase AC028_02385 PF00271 Helicase conserved C-terminal domain AC028_02385 PF17191 RecG wedge domain AC028_02390 PF01042 Endoribonuclease L-PSP AC028_02395 PF08666 SAF domain AC028_02395 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AC028_02400 PF03573 outer membrane porin, OprD family AC028_02405 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AC028_02405 PF13378 Enolase C-terminal domain-like AC028_02410 PF07690 Major Facilitator Superfamily AC028_02415 PF00171 Aldehyde dehydrogenase family AC028_02420 PF00701 Dihydrodipicolinate synthetase family AC028_02425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_02425 PF03466 LysR substrate binding domain AC028_02430 PF02824 TGS domain AC028_02430 PF04607 Region found in RelA / SpoT proteins AC028_02430 PF13291 ACT domain AC028_02435 PF01192 RNA polymerase Rpb6 AC028_02440 PF00625 Guanylate kinase AC028_02445 PF03755 YicC-like family, N-terminal region AC028_02445 PF08340 Domain of unknown function (DUF1732) AC028_02450 PF01138 3' exoribonuclease family, domain 1 AC028_02450 PF03725 3' exoribonuclease family, domain 2 AC028_02460 PF01725 Ham1 family AC028_02465 PF04055 Radical SAM superfamily AC028_02465 PF06969 HemN C-terminal domain AC028_02480 PF00557 Metallopeptidase family M24 AC028_02485 PF05195 Aminopeptidase P, N-terminal domain AC028_02485 PF00557 Metallopeptidase family M24 AC028_02490 PF03695 Uncharacterised protein family (UPF0149) AC028_02500 PF05164 Cell division protein ZapA AC028_02505 PF01812 5-formyltetrahydrofolate cyclo-ligase family AC028_02515 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AC028_02525 PF13369 Transglutaminase-like superfamily AC028_02530 PF00301 Rubredoxin AC028_02535 PF02581 Thiamine monophosphate synthase AC028_02545 PF00202 Aminotransferase class-III AC028_02550 PF00196 Bacterial regulatory proteins, luxR family AC028_02550 PF17874 MalT-like TPR region AC028_02555 PF00127 Copper binding proteins, plastocyanin/azurin family AC028_02560 PF00155 Aminotransferase class I and II AC028_02570 PF00034 Cytochrome c AC028_02570 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AC028_02575 PF01593 Flavin containing amine oxidoreductase AC028_02590 PF00202 Aminotransferase class-III AC028_02595 PF00027 Cyclic nucleotide-binding domain AC028_02595 PF00520 Ion transport protein AC028_02610 PF01569 PAP2 superfamily AC028_02615 PF01062 Bestrophin, RFP-TM, chloride channel AC028_02625 PF02875 Mur ligase family, glutamate ligase domain AC028_02625 PF08245 Mur ligase middle domain AC028_02625 PF01225 Mur ligase family, catalytic domain AC028_02635 PF00365 Phosphofructokinase AC028_02645 PF03030 Inorganic H+ pyrophosphatase AC028_02655 PF00719 Inorganic pyrophosphatase AC028_02665 PF07715 TonB-dependent Receptor Plug Domain AC028_02665 PF00593 TonB dependent receptor AC028_02670 PF12833 Helix-turn-helix domain AC028_02675 PF18500 CadC C-terminal domain 1 AC028_02675 PF00486 Transcriptional regulatory protein, C terminal AC028_02680 PF01964 Radical SAM ThiC family AC028_02680 PF13667 ThiC-associated domain AC028_02685 PF07715 TonB-dependent Receptor Plug Domain AC028_02685 PF00593 TonB dependent receptor AC028_02690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_02690 PF00672 HAMP domain AC028_02690 PF02203 Tar ligand binding domain homologue AC028_02700 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AC028_02700 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AC028_02705 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AC028_02705 PF00205 Thiamine pyrophosphate enzyme, central domain AC028_02705 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AC028_02715 PF00291 Pyridoxal-phosphate dependent enzyme AC028_02720 PF00682 HMGL-like AC028_02720 PF08502 LeuA allosteric (dimerisation) domain AC028_02725 PF00180 Isocitrate/isopropylmalate dehydrogenase AC028_02730 PF00694 Aconitase C-terminal domain AC028_02735 PF00330 Aconitase family (aconitate hydratase) AC028_02740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_02745 PF17151 Periplasmic sensor domain AC028_02745 PF00990 Diguanylate cyclase, GGDEF domain AC028_02760 PF02321 Outer membrane efflux protein AC028_02765 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AC028_02770 PF03279 Bacterial lipid A biosynthesis acyltransferase AC028_02805 PF13683 Integrase core domain AC028_02805 PF13276 HTH-like domain AC028_02810 PF01527 Transposase AC028_02815 PF01609 Transposase DDE domain AC028_02815 PF05598 Transposase domain (DUF772) AC028_02820 PF00155 Aminotransferase class I and II AC028_02835 PF01522 Polysaccharide deacetylase AC028_02840 PF00462 Glutaredoxin AC028_02855 PF01979 Amidohydrolase family AC028_02860 PF01979 Amidohydrolase family AC028_02880 PF02645 Uncharacterised protein, DegV family COG1307 AC028_02885 PF01327 Polypeptide deformylase AC028_02895 PF03960 ArsC family AC028_02910 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) AC028_02915 PF01270 Glycosyl hydrolases family 8 AC028_02920 PF03170 Bacterial cellulose synthase subunit AC028_02925 PF03552 Cellulose synthase AC028_02925 PF00535 Glycosyl transferase family 2 AC028_02925 PF07238 PilZ domain AC028_02940 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AC028_02940 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AC028_02980 PF07715 TonB-dependent Receptor Plug Domain AC028_02980 PF00593 TonB dependent receptor AC028_02990 PF00392 Bacterial regulatory proteins, gntR family AC028_02990 PF07702 UTRA domain AC028_03000 PF03958 Bacterial type II/III secretion system short domain AC028_03000 PF00263 Bacterial type II and III secretion system protein AC028_03010 PF10741 Type II secretion system (T2SS), protein M subtype b AC028_03015 PF05137 Fimbrial assembly protein (PilN) AC028_03020 PF03934 Type II secretion system (T2SS), protein K AC028_03030 PF07963 Prokaryotic N-terminal methylation motif AC028_03035 PF12019 Type II transport protein GspH AC028_03040 PF08334 Type II secretion system (T2SS), protein G AC028_03045 PF00482 Type II secretion system (T2SS), protein F AC028_03050 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AC028_03050 PF00437 Type II/IV secretion system protein AC028_03055 PF00082 Subtilase family AC028_03055 PF04151 Bacterial pre-peptidase C-terminal domain AC028_03065 PF01609 Transposase DDE domain AC028_03065 PF05598 Transposase domain (DUF772) AC028_03080 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AC028_03080 PF02769 AIR synthase related protein, C-terminal domain AC028_03080 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AC028_03085 PF13098 Thioredoxin-like domain AC028_03085 PF10411 Disulfide bond isomerase protein N-terminus AC028_03090 PF00589 Phage integrase family AC028_03090 PF02899 Phage integrase, N-terminal SAM-like domain AC028_03105 PF03739 Lipopolysaccharide export system permease LptF/LptG AC028_03115 PF00883 Cytosol aminopeptidase family, catalytic domain AC028_03115 PF02789 Cytosol aminopeptidase family, N-terminal domain AC028_03130 PF08264 Anticodon-binding domain of tRNA AC028_03130 PF10458 Valyl tRNA synthetase tRNA binding arm AC028_03130 PF00133 tRNA synthetases class I (I, L, M and V) AC028_03135 PF00593 TonB dependent receptor AC028_03135 PF07715 TonB-dependent Receptor Plug Domain AC028_03140 PF01464 Transglycosylase SLT domain AC028_03160 PF01066 CDP-alcohol phosphatidyltransferase AC028_03170 PF04073 Aminoacyl-tRNA editing domain AC028_03170 PF03129 Anticodon binding domain AC028_03170 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AC028_03195 PF01555 DNA methylase AC028_03210 PF12728 Helix-turn-helix domain AC028_03215 PF06067 Domain of unknown function (DUF932) AC028_03225 PF05284 Protein of unknown function (DUF736) AC028_03255 PF13614 AAA domain AC028_03280 PF03466 LysR substrate binding domain AC028_03280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_03285 PF07690 Major Facilitator Superfamily AC028_03290 PF07690 Major Facilitator Superfamily AC028_03305 PF03466 LysR substrate binding domain AC028_03305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_03310 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AC028_03310 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_03315 PF03466 LysR substrate binding domain AC028_03315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_03325 PF02534 Type IV secretory system Conjugative DNA transfer AC028_03335 PF00437 Type II/IV secretion system protein AC028_03340 PF04956 TrbC/VIRB2 family AC028_03350 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AC028_03380 PF03743 Bacterial conjugation TrbI-like protein AC028_03390 PF01588 Putative tRNA binding domain AC028_03390 PF09334 tRNA synthetases class I (M) AC028_03420 PF04542 Sigma-70 region 2 AC028_03420 PF04545 Sigma-70, region 4 AC028_03465 PF01042 Endoribonuclease L-PSP AC028_03475 PF09924 Uncharacterised conserved protein (DUF2156) AC028_03475 PF03706 Lysylphosphatidylglycerol synthase TM region AC028_03510 PF07690 Major Facilitator Superfamily AC028_03515 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AC028_03520 PF08274 PhnA Zinc-Ribbon AC028_03520 PF03831 PhnA domain AC028_03530 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AC028_03555 PF01258 Prokaryotic dksA/traR C4-type zinc finger AC028_03565 PF07043 Protein of unknown function (DUF1328) AC028_03570 PF01863 Protein of unknown function DUF45 AC028_03575 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AC028_03575 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AC028_03580 PF00082 Subtilase family AC028_03580 PF03797 Autotransporter beta-domain AC028_03580 PF12951 Passenger-associated-transport-repeat AC028_03585 PF00108 Thiolase, N-terminal domain AC028_03585 PF02803 Thiolase, C-terminal domain AC028_03615 PF04675 DNA ligase N terminus AC028_03615 PF01068 ATP dependent DNA ligase domain AC028_03615 PF04679 ATP dependent DNA ligase C terminal region AC028_03625 PF04675 DNA ligase N terminus AC028_03625 PF01068 ATP dependent DNA ligase domain AC028_03625 PF04679 ATP dependent DNA ligase C terminal region AC028_03630 PF00271 Helicase conserved C-terminal domain AC028_03630 PF00270 DEAD/DEAH box helicase AC028_03630 PF08494 DEAD/H associated AC028_03640 PF01494 FAD binding domain AC028_03645 PF00313 'Cold-shock' DNA-binding domain AC028_03650 PF01048 Phosphorylase superfamily AC028_03660 PF00933 Glycosyl hydrolase family 3 N terminal domain AC028_03665 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AC028_03670 PF01593 Flavin containing amine oxidoreductase AC028_03675 PF01323 DSBA-like thioredoxin domain AC028_03685 PF05958 tRNA (Uracil-5-)-methyltransferase AC028_03695 PF02565 Recombination protein O C terminal AC028_03695 PF11967 Recombination protein O N terminal AC028_03700 PF01926 50S ribosome-binding GTPase AC028_03700 PF07650 KH domain AC028_03705 PF00035 Double-stranded RNA binding motif AC028_03705 PF14622 Ribonuclease-III-like AC028_03715 PF10502 Signal peptidase, peptidase S26 AC028_03720 PF00009 Elongation factor Tu GTP binding domain AC028_03720 PF00679 Elongation factor G C-terminus AC028_03720 PF03144 Elongation factor Tu domain 2 AC028_03720 PF06421 GTP-binding protein LepA C-terminus AC028_03725 PF13180 PDZ domain AC028_03735 PF08281 Sigma-70, region 4 AC028_03735 PF04542 Sigma-70 region 2 AC028_03740 PF00378 Enoyl-CoA hydratase/isomerase AC028_03740 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AC028_03740 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AC028_03760 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AC028_03760 PF17944 Arginine decarboxylase C-terminal helical extension AC028_03760 PF17810 Arginine decarboxylase helical bundle domain AC028_03765 PF17284 Spermidine synthase tetramerisation domain AC028_03795 PF00543 Nitrogen regulatory protein P-II AC028_03800 PF04380 Membrane fusogenic activity AC028_03805 PF01078 Magnesium chelatase, subunit ChlI AC028_03805 PF13335 Magnesium chelatase, subunit ChlI C-terminal AC028_03820 PF00563 EAL domain AC028_03820 PF12792 CSS motif domain associated with EAL AC028_03825 PF00487 Fatty acid desaturase AC028_03830 PF00970 Oxidoreductase FAD-binding domain AC028_03830 PF00175 Oxidoreductase NAD-binding domain AC028_03830 PF00111 2Fe-2S iron-sulfur cluster binding domain AC028_03835 PF00440 Bacterial regulatory proteins, tetR family AC028_03855 PF01139 tRNA-splicing ligase RtcB AC028_03900 PF00072 Response regulator receiver domain AC028_03900 PF00486 Transcriptional regulatory protein, C terminal AC028_03905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_03905 PF08521 Two-component sensor kinase N-terminal AC028_03905 PF00512 His Kinase A (phospho-acceptor) domain AC028_03930 PF00595 PDZ domain AC028_03950 PF01594 AI-2E family transporter AC028_03955 PF13419 Haloacid dehalogenase-like hydrolase AC028_03960 PF00883 Cytosol aminopeptidase family, catalytic domain AC028_03960 PF02789 Cytosol aminopeptidase family, N-terminal domain AC028_03970 PF00199 Catalase AC028_03985 PF00072 Response regulator receiver domain AC028_03985 PF00196 Bacterial regulatory proteins, luxR family AC028_03990 PF07730 Histidine kinase AC028_03995 PF13533 Biotin-lipoyl like AC028_04000 PF00005 ABC transporter AC028_04020 PF00892 EamA-like transporter family AC028_04025 PF00892 EamA-like transporter family AC028_04040 PF00753 Metallo-beta-lactamase superfamily AC028_04045 PF00579 tRNA synthetases class I (W and Y) AC028_04050 PF05532 CsbD-like AC028_04065 PF00491 Arginase family AC028_04090 PF02223 Thymidylate kinase AC028_04105 PF03309 Type III pantothenate kinase AC028_04110 PF02237 Biotin protein ligase C terminal domain AC028_04110 PF03099 Biotin/lipoate A/B protein ligase family AC028_04110 PF08279 HTH domain AC028_04120 PF06167 Glucose-regulated metallo-peptidase M90 AC028_04135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_04135 PF00512 His Kinase A (phospho-acceptor) domain AC028_04135 PF00672 HAMP domain AC028_04140 PF00072 Response regulator receiver domain AC028_04140 PF00486 Transcriptional regulatory protein, C terminal AC028_04150 PF01207 Dihydrouridine synthase (Dus) AC028_04165 PF00199 Catalase AC028_04165 PF06628 Catalase-related immune-responsive AC028_04175 PF06733 DEAD_2 AC028_04175 PF13307 Helicase C-terminal domain AC028_04190 PF08501 Shikimate dehydrogenase substrate binding domain AC028_04190 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AC028_04190 PF01488 Shikimate / quinate 5-dehydrogenase AC028_04200 PF00175 Oxidoreductase NAD-binding domain AC028_04200 PF00667 FAD binding domain AC028_04200 PF00258 Flavodoxin AC028_04210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_04210 PF03466 LysR substrate binding domain AC028_04220 PF00490 Delta-aminolevulinic acid dehydratase AC028_04250 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AC028_04250 PF00326 Prolyl oligopeptidase family AC028_04255 PF00043 Glutathione S-transferase, C-terminal domain AC028_04255 PF02798 Glutathione S-transferase, N-terminal domain AC028_04290 PF00005 ABC transporter AC028_04300 PF01381 Helix-turn-helix AC028_04315 PF02583 Metal-sensitive transcriptional repressor AC028_04320 PF01545 Cation efflux family AC028_04325 PF01383 CpcD/allophycocyanin linker domain AC028_04325 PF00175 Oxidoreductase NAD-binding domain AC028_04330 PF00005 ABC transporter AC028_04335 PF01061 ABC-2 type transporter AC028_04340 PF02558 Ketopantoate reductase PanE/ApbA AC028_04340 PF08546 Ketopantoate reductase PanE/ApbA C terminal AC028_04370 PF00268 Ribonucleotide reductase, small chain AC028_04380 PF03477 ATP cone domain AC028_04380 PF02867 Ribonucleotide reductase, barrel domain AC028_04380 PF00317 Ribonucleotide reductase, all-alpha domain AC028_04390 PF13607 Succinyl-CoA ligase like flavodoxin domain AC028_04390 PF13380 CoA binding domain AC028_04390 PF00583 Acetyltransferase (GNAT) family AC028_04395 PF00571 CBS domain AC028_04395 PF01769 Divalent cation transporter AC028_04395 PF03448 MgtE intracellular N domain AC028_04400 PF00194 Eukaryotic-type carbonic anhydrase AC028_04405 PF00999 Sodium/hydrogen exchanger family AC028_04405 PF02254 TrkA-N domain AC028_04410 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AC028_04410 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AC028_04415 PF00723 Glycosyl hydrolases family 15 AC028_04425 PF05166 YcgL domain AC028_04430 PF02801 Beta-ketoacyl synthase, C-terminal domain AC028_04430 PF00109 Beta-ketoacyl synthase, N-terminal domain AC028_04440 PF00535 Glycosyl transferase family 2 AC028_04450 PF01609 Transposase DDE domain AC028_04450 PF05598 Transposase domain (DUF772) AC028_04495 PF07977 FabA-like domain AC028_04500 PF01553 Acyltransferase AC028_04510 PF00550 Phosphopantetheine attachment site AC028_04515 PF04820 Tryptophan halogenase AC028_04535 PF07676 WD40-like Beta Propeller Repeat AC028_04535 PF00326 Prolyl oligopeptidase family AC028_04550 PF01218 Coproporphyrinogen III oxidase AC028_04555 PF01367 5'-3' exonuclease, C-terminal SAM fold AC028_04555 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AC028_04555 PF00476 DNA polymerase family A AC028_04555 PF01612 3'-5' exonuclease AC028_04585 PF00069 Protein kinase domain AC028_04585 PF03793 PASTA domain AC028_04615 PF00248 Aldo/keto reductase family AC028_04620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_04620 PF03466 LysR substrate binding domain AC028_04635 PF04717 Type VI secretion system, phage-baseplate injector AC028_04650 PF03793 PASTA domain AC028_04650 PF00069 Protein kinase domain AC028_04660 PF04542 Sigma-70 region 2 AC028_04660 PF08281 Sigma-70, region 4 AC028_04675 PF00328 Histidine phosphatase superfamily (branch 2) AC028_04690 PF13683 Integrase core domain AC028_04690 PF13276 HTH-like domain AC028_04695 PF01527 Transposase AC028_04710 PF00665 Integrase core domain AC028_04710 PF13333 Integrase core domain AC028_04710 PF13276 HTH-like domain AC028_04715 PF01527 Transposase AC028_04725 PF10566 Glycoside hydrolase 97 AC028_04725 PF14508 Glycosyl-hydrolase 97 N-terminal AC028_04725 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AC028_04745 PF13683 Integrase core domain AC028_04745 PF13276 HTH-like domain AC028_04750 PF01527 Transposase AC028_04755 PF05598 Transposase domain (DUF772) AC028_04755 PF01609 Transposase DDE domain AC028_04765 PF02540 NAD synthase AC028_04765 PF00795 Carbon-nitrogen hydrolase AC028_04775 PF11896 Domain of unknown function (DUF3416) AC028_04775 PF00128 Alpha amylase, catalytic domain AC028_04780 PF16657 Maltogenic Amylase, C-terminal domain AC028_04780 PF00128 Alpha amylase, catalytic domain AC028_04785 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AC028_04785 PF00128 Alpha amylase, catalytic domain AC028_04785 PF02806 Alpha amylase, C-terminal all-beta domain AC028_04795 PF00248 Aldo/keto reductase family AC028_04800 PF00135 Carboxylesterase family AC028_04805 PF13472 GDSL-like Lipase/Acylhydrolase family AC028_04805 PF07859 alpha/beta hydrolase fold AC028_04815 PF03480 Bacterial extracellular solute-binding protein, family 7 AC028_04825 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AC028_04830 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AC028_04830 PF04616 Glycosyl hydrolases family 43 AC028_04835 PF00356 Bacterial regulatory proteins, lacI family AC028_04840 PF04962 KduI/IolB family AC028_04855 PF00657 GDSL-like Lipase/Acylhydrolase AC028_04865 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AC028_04870 PF01037 Lrp/AsnC ligand binding domain AC028_04875 PF00593 TonB dependent receptor AC028_04875 PF07660 Secretin and TonB N terminus short domain AC028_04875 PF07715 TonB-dependent Receptor Plug Domain AC028_04880 PF01734 Patatin-like phospholipase AC028_04890 PF00005 ABC transporter AC028_04905 PF00571 CBS domain AC028_04905 PF00005 ABC transporter AC028_04910 PF00528 Binding-protein-dependent transport system inner membrane component AC028_04920 PF12867 DinB superfamily AC028_04920 PF03781 Sulfatase-modifying factor enzyme 1 AC028_04955 PF10609 NUBPL iron-transfer P-loop NTPase AC028_04955 PF01883 Iron-sulfur cluster assembly protein AC028_04970 PF13091 PLD-like domain AC028_04975 PF03061 Thioesterase superfamily AC028_05005 PF08240 Alcohol dehydrogenase GroES-like domain AC028_05005 PF00107 Zinc-binding dehydrogenase AC028_05015 PF02673 Bacitracin resistance protein BacA AC028_05020 PF03951 Glutamine synthetase, beta-Grasp domain AC028_05020 PF00120 Glutamine synthetase, catalytic domain AC028_05025 PF00543 Nitrogen regulatory protein P-II AC028_05030 PF00909 Ammonium Transporter Family AC028_05035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_05035 PF00989 PAS fold AC028_05035 PF00512 His Kinase A (phospho-acceptor) domain AC028_05040 PF02954 Bacterial regulatory protein, Fis family AC028_05040 PF00072 Response regulator receiver domain AC028_05040 PF00158 Sigma-54 interaction domain AC028_05045 PF00080 Copper/zinc superoxide dismutase (SODC) AC028_05050 PF00080 Copper/zinc superoxide dismutase (SODC) AC028_05055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AC028_05065 PF02803 Thiolase, C-terminal domain AC028_05065 PF00108 Thiolase, N-terminal domain AC028_05100 PF00581 Rhodanese-like domain AC028_05105 PF02556 Preprotein translocase subunit SecB AC028_05110 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AC028_05110 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AC028_05130 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AC028_05130 PF00205 Thiamine pyrophosphate enzyme, central domain AC028_05130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AC028_05135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_05140 PF00158 Sigma-54 interaction domain AC028_05140 PF00072 Response regulator receiver domain AC028_05140 PF02954 Bacterial regulatory protein, Fis family AC028_05155 PF07690 Major Facilitator Superfamily AC028_05160 PF00588 SpoU rRNA Methylase family AC028_05175 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AC028_05175 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AC028_05180 PF13784 Fic/DOC family N-terminal AC028_05180 PF02661 Fic/DOC family AC028_05185 PF00561 alpha/beta hydrolase fold AC028_05190 PF03692 Putative zinc- or iron-chelating domain AC028_05195 PF00501 AMP-binding enzyme AC028_05205 PF00144 Beta-lactamase AC028_05210 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AC028_05235 PF03109 ABC1 family AC028_05245 PF00849 RNA pseudouridylate synthase AC028_05255 PF00472 RF-1 domain AC028_05265 PF01112 Asparaginase AC028_05270 PF01432 Peptidase family M3 AC028_05275 PF00106 short chain dehydrogenase AC028_05280 PF12706 Beta-lactamase superfamily domain AC028_05300 PF12833 Helix-turn-helix domain AC028_05305 PF00999 Sodium/hydrogen exchanger family AC028_05310 PF03466 LysR substrate binding domain AC028_05310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_05315 PF01274 Malate synthase AC028_05320 PF00463 Isocitrate lyase family AC028_05325 PF00990 Diguanylate cyclase, GGDEF domain AC028_05345 PF00326 Prolyl oligopeptidase family AC028_05350 PF13683 Integrase core domain AC028_05350 PF13276 HTH-like domain AC028_05355 PF01527 Transposase AC028_05365 PF00289 Biotin carboxylase, N-terminal domain AC028_05365 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AC028_05365 PF00364 Biotin-requiring enzyme AC028_05365 PF02785 Biotin carboxylase C-terminal domain AC028_05370 PF01039 Carboxyl transferase domain AC028_05375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_05375 PF02770 Acyl-CoA dehydrogenase, middle domain AC028_05375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_05430 PF07683 Cobalamin synthesis protein cobW C-terminal domain AC028_05430 PF02492 CobW/HypB/UreG, nucleotide-binding domain AC028_05455 PF03969 AFG1-like ATPase AC028_05460 PF01047 MarR family AC028_05465 PF02566 OsmC-like protein AC028_05495 PF16884 N-terminal domain of oxidoreductase AC028_05495 PF00107 Zinc-binding dehydrogenase AC028_05510 PF00849 RNA pseudouridylate synthase AC028_05515 PF00593 TonB dependent receptor AC028_05525 PF00271 Helicase conserved C-terminal domain AC028_05525 PF04408 Helicase associated domain (HA2) AC028_05525 PF08482 ATP-dependent helicase C-terminal AC028_05525 PF00270 DEAD/DEAH box helicase AC028_05530 PF07308 Protein of unknown function (DUF1456) AC028_05535 PF00576 HIUase/Transthyretin family AC028_05540 PF13454 FAD-NAD(P)-binding AC028_05545 PF01014 Uricase AC028_05545 PF09349 OHCU decarboxylase AC028_05560 PF00266 Aminotransferase class-V AC028_05565 PF01546 Peptidase family M20/M25/M40 AC028_05565 PF07687 Peptidase dimerisation domain AC028_05570 PF03466 LysR substrate binding domain AC028_05570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_05575 PF00561 alpha/beta hydrolase fold AC028_05590 PF01425 Amidase AC028_05595 PF01156 Inosine-uridine preferring nucleoside hydrolase AC028_05605 PF00860 Permease family AC028_05615 PF00111 2Fe-2S iron-sulfur cluster binding domain AC028_05620 PF00355 Rieske [2Fe-2S] domain AC028_05625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_05625 PF03466 LysR substrate binding domain AC028_05630 PF01026 TatD related DNase AC028_05640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_05640 PF03466 LysR substrate binding domain AC028_05645 PF07690 Major Facilitator Superfamily AC028_05655 PF00561 alpha/beta hydrolase fold AC028_05655 PF08386 TAP-like protein AC028_05660 PF02146 Sir2 family AC028_05665 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AC028_05670 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AC028_05670 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AC028_05680 PF00551 Formyl transferase AC028_05685 PF00486 Transcriptional regulatory protein, C terminal AC028_05685 PF00072 Response regulator receiver domain AC028_05690 PF00512 His Kinase A (phospho-acceptor) domain AC028_05690 PF00672 HAMP domain AC028_05690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_05695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC028_05695 PF00529 HlyD membrane-fusion protein of T1SS AC028_05700 PF00873 AcrB/AcrD/AcrF family AC028_05705 PF02321 Outer membrane efflux protein AC028_05705 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AC028_05715 PF02219 Methylenetetrahydrofolate reductase AC028_05720 PF02677 Epoxyqueuosine reductase QueH AC028_05725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_05725 PF03466 LysR substrate binding domain AC028_05730 PF03358 NADPH-dependent FMN reductase AC028_05740 PF01717 Cobalamin-independent synthase, Catalytic domain AC028_05740 PF08267 Cobalamin-independent synthase, N-terminal domain AC028_05745 PF03812 2-keto-3-deoxygluconate permease AC028_05765 PF05368 NmrA-like family AC028_05770 PF01638 HxlR-like helix-turn-helix AC028_05805 PF00920 Dehydratase family AC028_05825 PF00132 Bacterial transferase hexapeptide (six repeats) AC028_05835 PF07690 Major Facilitator Superfamily AC028_05840 PF01966 HD domain AC028_05840 PF11871 Domain of unknown function (DUF3391) AC028_05860 PF00171 Aldehyde dehydrogenase family AC028_05870 PF01494 FAD binding domain AC028_05880 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AC028_05880 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AC028_05885 PF00230 Major intrinsic protein AC028_05890 PF01266 FAD dependent oxidoreductase AC028_05890 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AC028_05895 PF08220 DeoR-like helix-turn-helix domain AC028_05895 PF00455 DeoR C terminal sensor domain AC028_05905 PF00355 Rieske [2Fe-2S] domain AC028_05910 PF01144 Coenzyme A transferase AC028_05915 PF01144 Coenzyme A transferase AC028_05920 PF00108 Thiolase, N-terminal domain AC028_05920 PF02803 Thiolase, C-terminal domain AC028_05925 PF00775 Dioxygenase AC028_05925 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AC028_05935 PF10397 Adenylosuccinate lyase C-terminus AC028_05935 PF00206 Lyase AC028_05940 PF12146 Serine aminopeptidase, S33 AC028_05945 PF02627 Carboxymuconolactone decarboxylase family AC028_05955 PF01614 Bacterial transcriptional regulator AC028_05955 PF09339 IclR helix-turn-helix domain AC028_05965 PF07859 alpha/beta hydrolase fold AC028_05975 PF10677 Protein of unknown function (DUF2490) AC028_05980 PF01134 Glucose inhibited division protein A AC028_05980 PF13932 GidA associated domain AC028_05990 PF00291 Pyridoxal-phosphate dependent enzyme AC028_06010 PF13649 Methyltransferase domain AC028_06020 PF12697 Alpha/beta hydrolase family AC028_06030 PF00155 Aminotransferase class I and II AC028_06035 PF06968 Biotin and Thiamin Synthesis associated domain AC028_06035 PF04055 Radical SAM superfamily AC028_06045 PF01040 UbiA prenyltransferase family AC028_06075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_06075 PF00072 Response regulator receiver domain AC028_06075 PF13188 PAS domain AC028_06075 PF08448 PAS fold AC028_06075 PF00512 His Kinase A (phospho-acceptor) domain AC028_06080 PF01527 Transposase AC028_06085 PF13276 HTH-like domain AC028_06085 PF13683 Integrase core domain AC028_06100 PF00698 Acyl transferase domain AC028_06100 PF00107 Zinc-binding dehydrogenase AC028_06100 PF16197 Ketoacyl-synthetase C-terminal extension AC028_06100 PF08240 Alcohol dehydrogenase GroES-like domain AC028_06100 PF00109 Beta-ketoacyl synthase, N-terminal domain AC028_06100 PF00550 Phosphopantetheine attachment site AC028_06100 PF08659 KR domain AC028_06100 PF14765 Polyketide synthase dehydratase AC028_06100 PF02801 Beta-ketoacyl synthase, C-terminal domain AC028_06105 PF01553 Acyltransferase AC028_06115 PF00356 Bacterial regulatory proteins, lacI family AC028_06135 PF04820 Tryptophan halogenase AC028_06140 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AC028_06145 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AC028_06150 PF04337 Protein of unknown function, DUF480 AC028_06160 PF13302 Acetyltransferase (GNAT) domain AC028_06165 PF13361 UvrD-like helicase C-terminal domain AC028_06165 PF00580 UvrD/REP helicase N-terminal domain AC028_06170 PF00265 Thymidine kinase AC028_06175 PF01590 GAF domain AC028_06175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_06175 PF08446 PAS fold AC028_06175 PF00360 Phytochrome region AC028_06175 PF00512 His Kinase A (phospho-acceptor) domain AC028_06180 PF04349 Periplasmic glucan biosynthesis protein, MdoG AC028_06190 PF06827 Zinc finger found in FPG and IleRS AC028_06190 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AC028_06190 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AC028_06220 PF03594 Benzoate membrane transport protein AC028_06225 PF08446 PAS fold AC028_06225 PF01590 GAF domain AC028_06225 PF00360 Phytochrome region AC028_06225 PF13426 PAS domain AC028_06230 PF01126 Heme oxygenase AC028_06235 PF07690 Major Facilitator Superfamily AC028_06240 PF01263 Aldose 1-epimerase AC028_06250 PF02810 SEC-C motif AC028_06255 PF01925 Sulfite exporter TauE/SafE AC028_06275 PF01227 GTP cyclohydrolase I AC028_06285 PF07869 Protein of unknown function (DUF1656) AC028_06290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC028_06290 PF00529 HlyD membrane-fusion protein of T1SS AC028_06295 PF02321 Outer membrane efflux protein AC028_06300 PF04632 Fusaric acid resistance protein family AC028_06305 PF00083 Sugar (and other) transporter AC028_06315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_06315 PF03466 LysR substrate binding domain AC028_06320 PF00106 short chain dehydrogenase AC028_06330 PF13091 PLD-like domain AC028_06330 PF13396 Phospholipase_D-nuclease N-terminal AC028_06395 PF02785 Biotin carboxylase C-terminal domain AC028_06395 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AC028_06395 PF00289 Biotin carboxylase, N-terminal domain AC028_06450 PF13538 UvrD-like helicase C-terminal domain AC028_06455 PF12705 PD-(D/E)XK nuclease superfamily AC028_06455 PF00580 UvrD/REP helicase N-terminal domain AC028_06455 PF13361 UvrD-like helicase C-terminal domain AC028_06460 PF17946 RecC C-terminal domain AC028_06495 PF00005 ABC transporter AC028_06500 PF02405 Permease MlaE AC028_06505 PF02470 MlaD protein AC028_06510 PF05494 MlaC protein AC028_06520 PF04333 MlaA lipoprotein AC028_06530 PF00255 Glutathione peroxidase AC028_06540 PF02646 RmuC family AC028_06550 PF00043 Glutathione S-transferase, C-terminal domain AC028_06550 PF13417 Glutathione S-transferase, N-terminal domain AC028_06560 PF13520 Amino acid permease AC028_06575 PF05651 Putative sugar diacid recognition AC028_06575 PF17853 GGDEF-like domain AC028_06575 PF13556 PucR C-terminal helix-turn-helix domain AC028_06580 PF02595 Glycerate kinase family AC028_06585 PF07690 Major Facilitator Superfamily AC028_06600 PF17785 PUA-like domain AC028_06600 PF10672 S-adenosylmethionine-dependent methyltransferase AC028_06605 PF03741 Integral membrane protein TerC family AC028_06610 PF01694 Rhomboid family AC028_06615 PF03009 Glycerophosphoryl diester phosphodiesterase family AC028_06625 PF01569 PAP2 superfamily AC028_06630 PF12631 MnmE helical domain AC028_06630 PF10396 GTP-binding protein TrmE N-terminus AC028_06630 PF01926 50S ribosome-binding GTPase AC028_06640 PF14849 YidC periplasmic domain AC028_06640 PF02096 60Kd inner membrane protein AC028_06645 PF00825 Ribonuclease P AC028_06650 PF00468 Ribosomal protein L34 AC028_06655 PF08299 Bacterial dnaA protein helix-turn-helix AC028_06655 PF11638 DnaA N-terminal domain AC028_06655 PF00308 Bacterial dnaA protein AC028_06660 PF02767 DNA polymerase III beta subunit, central domain AC028_06660 PF00712 DNA polymerase III beta subunit, N-terminal domain AC028_06660 PF02768 DNA polymerase III beta subunit, C-terminal domain AC028_06665 PF02463 RecF/RecN/SMC N terminal domain AC028_06670 PF00204 DNA gyrase B AC028_06670 PF18053 DNA gyrase B subunit insert domain AC028_06670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_06670 PF01751 Toprim domain AC028_06670 PF00986 DNA gyrase B subunit, carboxyl terminus AC028_06680 PF01435 Peptidase family M48 AC028_06690 PF03544 Gram-negative bacterial TonB protein C-terminal AC028_06695 PF01618 MotA/TolQ/ExbB proton channel family AC028_06700 PF02472 Biopolymer transport protein ExbD/TolR AC028_06705 PF02472 Biopolymer transport protein ExbD/TolR AC028_06710 PF02472 Biopolymer transport protein ExbD/TolR AC028_06715 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AC028_06725 PF13396 Phospholipase_D-nuclease N-terminal AC028_06725 PF13091 PLD-like domain AC028_06740 PF04055 Radical SAM superfamily AC028_06755 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AC028_06755 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AC028_06760 PF13180 PDZ domain AC028_06760 PF03572 Peptidase family S41 AC028_06765 PF01551 Peptidase family M23 AC028_06775 PF04389 Peptidase family M28 AC028_06785 PF00150 Cellulase (glycosyl hydrolase family 5) AC028_06790 PF00150 Cellulase (glycosyl hydrolase family 5) AC028_06800 PF00150 Cellulase (glycosyl hydrolase family 5) AC028_06805 PF08240 Alcohol dehydrogenase GroES-like domain AC028_06805 PF00107 Zinc-binding dehydrogenase AC028_06840 PF00881 Nitroreductase family AC028_06845 PF04264 YceI-like domain AC028_06855 PF00328 Histidine phosphatase superfamily (branch 2) AC028_06870 PF16957 Malonate decarboxylase, alpha subunit, transporter AC028_06875 PF06857 Malonate decarboxylase delta subunit (MdcD) AC028_06880 PF01039 Carboxyl transferase domain AC028_06890 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG AC028_06895 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AC028_06900 PF00698 Acyl transferase domain AC028_06910 PF07729 FCD domain AC028_06910 PF00392 Bacterial regulatory proteins, gntR family AC028_06945 PF07745 Glycosyl hydrolase family 53 AC028_06950 PF17831 Pyruvate dehydrogenase E1 component middle domain AC028_06950 PF00456 Transketolase, thiamine diphosphate binding domain AC028_06970 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AC028_06970 PF00437 Type II/IV secretion system protein AC028_06975 PF02091 Glycyl-tRNA synthetase alpha subunit AC028_06980 PF05746 DALR anticodon binding domain AC028_06980 PF02092 Glycyl-tRNA synthetase beta subunit AC028_06990 PF01609 Transposase DDE domain AC028_06990 PF05598 Transposase domain (DUF772) AC028_07015 PF13333 Integrase core domain AC028_07015 PF00665 Integrase core domain AC028_07015 PF13276 HTH-like domain AC028_07020 PF01527 Transposase AC028_07030 PF01609 Transposase DDE domain AC028_07030 PF05598 Transposase domain (DUF772) AC028_07045 PF01103 Surface antigen AC028_07045 PF17243 POTRA domain TamA domain 1 AC028_07050 PF04357 TamB, inner membrane protein subunit of TAM complex AC028_07070 PF13360 PQQ-like domain AC028_07070 PF13570 PQQ-like domain AC028_07070 PF01011 PQQ enzyme repeat AC028_07085 PF06165 Glycosyltransferase family 36 AC028_07085 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AC028_07095 PF00512 His Kinase A (phospho-acceptor) domain AC028_07095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_07100 PF02659 Putative manganese efflux pump AC028_07105 PF01614 Bacterial transcriptional regulator AC028_07105 PF09339 IclR helix-turn-helix domain AC028_07110 PF07690 Major Facilitator Superfamily AC028_07115 PF05336 L-rhamnose mutarotase AC028_07120 PF13378 Enolase C-terminal domain-like AC028_07120 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AC028_07125 PF01557 Fumarylacetoacetate (FAA) hydrolase family AC028_07140 PF00248 Aldo/keto reductase family AC028_07150 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AC028_07150 PF04616 Glycosyl hydrolases family 43 AC028_07175 PF00072 Response regulator receiver domain AC028_07175 PF00196 Bacterial regulatory proteins, luxR family AC028_07180 PF13193 AMP-binding enzyme C-terminal domain AC028_07180 PF00501 AMP-binding enzyme AC028_07180 PF16177 Acetyl-coenzyme A synthetase N-terminus AC028_07190 PF04341 Protein of unknown function, DUF485 AC028_07195 PF00474 Sodium:solute symporter family AC028_07205 PF09312 SurA N-terminal domain AC028_07205 PF00639 PPIC-type PPIASE domain AC028_07215 PF00480 ROK family AC028_07220 PF03372 Endonuclease/Exonuclease/phosphatase family AC028_07230 PF04226 Transglycosylase associated protein AC028_07240 PF01648 4'-phosphopantetheinyl transferase superfamily AC028_07245 PF09423 PhoD-like phosphatase AC028_07245 PF16655 PhoD-like phosphatase, N-terminal domain AC028_07250 PF16655 PhoD-like phosphatase, N-terminal domain AC028_07250 PF09423 PhoD-like phosphatase AC028_07255 PF02527 rRNA small subunit methyltransferase G AC028_07275 PF13533 Biotin-lipoyl like AC028_07280 PF00873 AcrB/AcrD/AcrF family AC028_07285 PF00830 Ribosomal L28 family AC028_07290 PF00471 Ribosomal protein L33 AC028_07295 PF04909 Amidohydrolase AC028_07300 PF04303 PrpF protein AC028_07305 PF03737 Aldolase/RraA AC028_07310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_07310 PF03466 LysR substrate binding domain AC028_07315 PF13091 PLD-like domain AC028_07315 PF13396 Phospholipase_D-nuclease N-terminal AC028_07325 PF13361 UvrD-like helicase C-terminal domain AC028_07325 PF00580 UvrD/REP helicase N-terminal domain AC028_07335 PF12464 Maltose acetyltransferase AC028_07335 PF14602 Hexapeptide repeat of succinyl-transferase AC028_07360 PF05638 Type VI secretion system effector, Hcp AC028_07400 PF00924 Mechanosensitive ion channel AC028_07400 PF12795 Mechanosensitive ion channel porin domain AC028_07400 PF12794 Mechanosensitive ion channel inner membrane domain 1 AC028_07405 PF00884 Sulfatase AC028_07410 PF03109 ABC1 family AC028_07415 PF05661 Protein of unknown function (DUF808) AC028_07420 PF00990 Diguanylate cyclase, GGDEF domain AC028_07420 PF00072 Response regulator receiver domain AC028_07425 PF00534 Glycosyl transferases group 1 AC028_07425 PF08323 Starch synthase catalytic domain AC028_07430 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AC028_07430 PF02806 Alpha amylase, C-terminal all-beta domain AC028_07430 PF00128 Alpha amylase, catalytic domain AC028_07435 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AC028_07435 PF00128 Alpha amylase, catalytic domain AC028_07435 PF11941 Domain of unknown function (DUF3459) AC028_07440 PF02446 4-alpha-glucanotransferase AC028_07445 PF00128 Alpha amylase, catalytic domain AC028_07455 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AC028_07455 PF00128 Alpha amylase, catalytic domain AC028_07460 PF13460 NAD(P)H-binding AC028_07480 PF06903 VirK protein AC028_07485 PF02321 Outer membrane efflux protein AC028_07500 PF00873 AcrB/AcrD/AcrF family AC028_07515 PF00270 DEAD/DEAH box helicase AC028_07515 PF00271 Helicase conserved C-terminal domain AC028_07520 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AC028_07520 PF02817 e3 binding domain AC028_07520 PF00364 Biotin-requiring enzyme AC028_07530 PF02779 Transketolase, pyrimidine binding domain AC028_07530 PF02780 Transketolase, C-terminal domain AC028_07535 PF00676 Dehydrogenase E1 component AC028_07545 PF03301 Tryptophan 2,3-dioxygenase AC028_07550 PF00854 POT family AC028_07560 PF01047 MarR family AC028_07565 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AC028_07570 PF04209 homogentisate 1,2-dioxygenase AC028_07585 PF03334 Na+/H+ antiporter subunit AC028_07590 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AC028_07600 PF00361 Proton-conducting membrane transporter AC028_07605 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AC028_07610 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AC028_07610 PF13244 Domain of unknown function (DUF4040) AC028_07610 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AC028_07610 PF00361 Proton-conducting membrane transporter AC028_07645 PF01259 SAICAR synthetase AC028_07650 PF00226 DnaJ domain AC028_07650 PF05099 Tellurite resistance protein TerB AC028_07660 PF00834 Ribulose-phosphate 3 epimerase family AC028_07665 PF00583 Acetyltransferase (GNAT) family AC028_07670 PF00781 Diacylglycerol kinase catalytic domain AC028_07675 PF00425 chorismate binding enzyme AC028_07675 PF04715 Anthranilate synthase component I, N terminal region AC028_07685 PF00117 Glutamine amidotransferase class-I AC028_07695 PF02885 Glycosyl transferase family, helical bundle domain AC028_07695 PF00591 Glycosyl transferase family, a/b domain AC028_07700 PF00218 Indole-3-glycerol phosphate synthase AC028_07710 PF00325 Bacterial regulatory proteins, crp family AC028_07710 PF00027 Cyclic nucleotide-binding domain AC028_07715 PF02675 S-adenosylmethionine decarboxylase AC028_07720 PF00893 Small Multidrug Resistance protein AC028_07725 PF03232 Ubiquinone biosynthesis protein COQ7 AC028_07730 PF00572 Ribosomal protein L13 AC028_07735 PF00380 Ribosomal protein S9/S16 AC028_07750 PF00293 NUDIX domain AC028_07760 PF00210 Ferritin-like domain AC028_07765 PF01627 Hpt domain AC028_07765 PF00512 His Kinase A (phospho-acceptor) domain AC028_07765 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AC028_07765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_07765 PF00672 HAMP domain AC028_07765 PF00072 Response regulator receiver domain AC028_07770 PF00072 Response regulator receiver domain AC028_07770 PF00486 Transcriptional regulatory protein, C terminal AC028_07790 PF01521 Iron-sulphur cluster biosynthesis AC028_07800 PF09297 NADH pyrophosphatase zinc ribbon domain AC028_07800 PF00293 NUDIX domain AC028_07800 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AC028_07805 PF17113 Regulatory signalling modulator protein AmpE AC028_07805 PF03186 CobD/Cbib protein AC028_07820 PF07690 Major Facilitator Superfamily AC028_07830 PF07690 Major Facilitator Superfamily AC028_07835 PF12805 FUSC-like inner membrane protein yccS AC028_07845 PF02844 Phosphoribosylglycinamide synthetase, N domain AC028_07845 PF02843 Phosphoribosylglycinamide synthetase, C domain AC028_07845 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AC028_07855 PF02142 MGS-like domain AC028_07855 PF01808 AICARFT/IMPCHase bienzyme AC028_07860 PF01066 CDP-alcohol phosphatidyltransferase AC028_07865 PF12146 Serine aminopeptidase, S33 AC028_07865 PF12147 Putative methyltransferase AC028_07870 PF00782 Dual specificity phosphatase, catalytic domain AC028_07900 PF02954 Bacterial regulatory protein, Fis family AC028_07915 PF01381 Helix-turn-helix AC028_07940 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AC028_07940 PF00289 Biotin carboxylase, N-terminal domain AC028_07940 PF02785 Biotin carboxylase C-terminal domain AC028_07950 PF00364 Biotin-requiring enzyme AC028_07955 PF01220 Dehydroquinase class II AC028_07960 PF02683 Cytochrome C biogenesis protein transmembrane region AC028_07960 PF11412 Disulphide bond corrector protein DsbC AC028_07965 PF03091 CutA1 divalent ion tolerance protein AC028_07970 PF04231 Endonuclease I AC028_07975 PF00166 Chaperonin 10 Kd subunit AC028_07980 PF00118 TCP-1/cpn60 chaperonin family AC028_07990 PF07715 TonB-dependent Receptor Plug Domain AC028_07990 PF00593 TonB dependent receptor AC028_07995 PF00793 DAHP synthetase I family AC028_08025 PF08335 GlnD PII-uridylyltransferase AC028_08025 PF03710 Glutamate-ammonia ligase adenylyltransferase AC028_08060 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_08060 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AC028_08065 PF01493 GXGXG motif AC028_08065 PF00310 Glutamine amidotransferases class-II AC028_08065 PF04898 Glutamate synthase central domain AC028_08065 PF01645 Conserved region in glutamate synthase AC028_08145 PF09369 Domain of unknown function (DUF1998) AC028_08145 PF00271 Helicase conserved C-terminal domain AC028_08145 PF00270 DEAD/DEAH box helicase AC028_08150 PF03006 Haemolysin-III related AC028_08165 PF00106 short chain dehydrogenase AC028_08175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_08175 PF03466 LysR substrate binding domain AC028_08195 PF02525 Flavodoxin-like fold AC028_08200 PF05598 Transposase domain (DUF772) AC028_08200 PF01609 Transposase DDE domain AC028_08210 PF13333 Integrase core domain AC028_08210 PF13276 HTH-like domain AC028_08210 PF00665 Integrase core domain AC028_08215 PF01527 Transposase AC028_08245 PF13276 HTH-like domain AC028_08245 PF00665 Integrase core domain AC028_08245 PF13333 Integrase core domain AC028_08250 PF01527 Transposase AC028_08255 PF01527 Transposase AC028_08260 PF13683 Integrase core domain AC028_08260 PF13276 HTH-like domain AC028_08270 PF01872 RibD C-terminal domain AC028_08305 PF05532 CsbD-like AC028_08340 PF00293 NUDIX domain AC028_08340 PF13344 Haloacid dehalogenase-like hydrolase AC028_08360 PF00085 Thioredoxin AC028_08365 PF08946 Osmosensory transporter coiled coil AC028_08365 PF00083 Sugar (and other) transporter AC028_08415 PF17863 AAA lid domain AC028_08415 PF07726 ATPase family associated with various cellular activities (AAA) AC028_08440 PF05598 Transposase domain (DUF772) AC028_08440 PF01609 Transposase DDE domain AC028_08450 PF00294 pfkB family carbohydrate kinase AC028_08460 PF07055 Enoyl reductase FAD binding domain AC028_08460 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AC028_08460 PF12241 Trans-2-enoyl-CoA reductase catalytic region AC028_08465 PF18500 CadC C-terminal domain 1 AC028_08465 PF00486 Transcriptional regulatory protein, C terminal AC028_08485 PF00196 Bacterial regulatory proteins, luxR family AC028_08485 PF00072 Response regulator receiver domain AC028_08490 PF07730 Histidine kinase AC028_08500 PF01070 FMN-dependent dehydrogenase AC028_08505 PF02735 Ku70/Ku80 beta-barrel domain AC028_08525 PF00171 Aldehyde dehydrogenase family AC028_08540 PF07715 TonB-dependent Receptor Plug Domain AC028_08540 PF00593 TonB dependent receptor AC028_08545 PF00155 Aminotransferase class I and II AC028_08570 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AC028_08580 PF05598 Transposase domain (DUF772) AC028_08580 PF01609 Transposase DDE domain AC028_08595 PF13276 HTH-like domain AC028_08595 PF13683 Integrase core domain AC028_08600 PF01527 Transposase AC028_08610 PF01527 Transposase AC028_08615 PF13333 Integrase core domain AC028_08615 PF00665 Integrase core domain AC028_08615 PF13276 HTH-like domain AC028_08640 PF00117 Glutamine amidotransferase class-I AC028_08640 PF00958 GMP synthase C terminal domain AC028_08650 PF00902 Sec-independent protein translocase protein (TatC) AC028_08655 PF02416 mttA/Hcf106 family AC028_08660 PF02416 mttA/Hcf106 family AC028_08670 PF00762 Ferrochelatase AC028_08675 PF12697 Alpha/beta hydrolase family AC028_08690 PF04381 Putative exonuclease, RdgC AC028_08695 PF01171 PP-loop family AC028_08705 PF00356 Bacterial regulatory proteins, lacI family AC028_08710 PF07488 Glycosyl hydrolase family 67 middle domain AC028_08710 PF03648 Glycosyl hydrolase family 67 N-terminus AC028_08710 PF07477 Glycosyl hydrolase family 67 C-terminus AC028_08720 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AC028_08720 PF13378 Enolase C-terminal domain-like AC028_08725 PF04616 Glycosyl hydrolases family 43 AC028_08725 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AC028_08735 PF01609 Transposase DDE domain AC028_08735 PF05598 Transposase domain (DUF772) AC028_08745 PF08125 Mannitol dehydrogenase C-terminal domain AC028_08745 PF01232 Mannitol dehydrogenase Rossmann domain AC028_08775 PF00171 Aldehyde dehydrogenase family AC028_08790 PF00202 Aminotransferase class-III AC028_08800 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AC028_08800 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AC028_08815 PF08450 SMP-30/Gluconolactonase/LRE-like region AC028_08820 PF00331 Glycosyl hydrolase family 10 AC028_08825 PF00703 Glycosyl hydrolases family 2 AC028_08825 PF16355 Domain of unknown function (DUF4982) AC028_08825 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AC028_08825 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AC028_08825 PF02837 Glycosyl hydrolases family 2, sugar binding domain AC028_08830 PF02614 Glucuronate isomerase AC028_08850 PF00331 Glycosyl hydrolase family 10 AC028_08850 PF00553 Cellulose binding domain AC028_08850 PF03422 Carbohydrate binding module (family 6) AC028_08870 PF04616 Glycosyl hydrolases family 43 AC028_08915 PF01527 Transposase AC028_08920 PF13276 HTH-like domain AC028_08920 PF13683 Integrase core domain AC028_08940 PF05819 NolX protein AC028_08950 PF03211 Pectate lyase AC028_08980 PF01313 Bacterial export proteins, family 3 AC028_08985 PF00813 FliP family AC028_09000 PF00771 FHIPEP family AC028_09005 PF01312 FlhB HrpN YscU SpaS Family AC028_09020 PF01514 Secretory protein of YscJ/FliF family AC028_09035 PF02874 ATP synthase alpha/beta family, beta-barrel domain AC028_09035 PF18269 T3SS EscN ATPase C-terminal domain AC028_09035 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AC028_09045 PF01311 Bacterial export proteins, family 1 AC028_09060 PF01464 Transglycosylase SLT domain AC028_09085 PF00004 ATPase family associated with various cellular activities (AAA) AC028_09085 PF07724 AAA domain (Cdc48 subfamily) AC028_09085 PF17871 AAA lid domain AC028_09085 PF10431 C-terminal, D2-small domain, of ClpB protein AC028_09095 PF00106 short chain dehydrogenase AC028_09110 PF00106 short chain dehydrogenase AC028_09120 PF13409 Glutathione S-transferase, N-terminal domain AC028_09155 PF00326 Prolyl oligopeptidase family AC028_09155 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AC028_09165 PF07759 Protein of unknown function (DUF1615) AC028_09170 PF00990 Diguanylate cyclase, GGDEF domain AC028_09170 PF05230 MASE2 domain AC028_09190 PF00892 EamA-like transporter family AC028_09210 PF00324 Amino acid permease AC028_09220 PF01544 CorA-like Mg2+ transporter protein AC028_09230 PF01204 Trehalase AC028_09240 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AC028_09240 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AC028_09260 PF03707 Bacterial signalling protein N terminal repeat AC028_09260 PF00990 Diguanylate cyclase, GGDEF domain AC028_09260 PF00563 EAL domain AC028_09265 PF02203 Tar ligand binding domain homologue AC028_09265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_09265 PF00672 HAMP domain AC028_09270 PF00150 Cellulase (glycosyl hydrolase family 5) AC028_09270 PF00553 Cellulose binding domain AC028_09275 PF01740 STAS domain AC028_09275 PF00916 Sulfate permease family AC028_09280 PF08448 PAS fold AC028_09280 PF00990 Diguanylate cyclase, GGDEF domain AC028_09290 PF13632 Glycosyl transferase family group 2 AC028_09300 PF06580 Histidine kinase AC028_09300 PF07694 5TMR of 5TMR-LYT AC028_09305 PF04397 LytTr DNA-binding domain AC028_09305 PF00072 Response regulator receiver domain AC028_09310 PF03900 Porphobilinogen deaminase, C-terminal domain AC028_09310 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AC028_09335 PF00326 Prolyl oligopeptidase family AC028_09335 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AC028_09340 PF00155 Aminotransferase class I and II AC028_09345 PF00326 Prolyl oligopeptidase family AC028_09345 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AC028_09350 PF04304 Protein of unknown function (DUF454) AC028_09360 PF01678 Diaminopimelate epimerase AC028_09370 PF02899 Phage integrase, N-terminal SAM-like domain AC028_09370 PF00589 Phage integrase family AC028_09375 PF00227 Proteasome subunit AC028_09380 PF10431 C-terminal, D2-small domain, of ClpB protein AC028_09380 PF07724 AAA domain (Cdc48 subfamily) AC028_09380 PF00004 ATPase family associated with various cellular activities (AAA) AC028_09390 PF13673 Acetyltransferase (GNAT) domain AC028_09395 PF13533 Biotin-lipoyl like AC028_09405 PF01209 ubiE/COQ5 methyltransferase family AC028_09410 PF00563 EAL domain AC028_09410 PF03707 Bacterial signalling protein N terminal repeat AC028_09410 PF00990 Diguanylate cyclase, GGDEF domain AC028_09415 PF11838 ERAP1-like C-terminal domain AC028_09415 PF01433 Peptidase family M1 domain AC028_09430 PF13360 PQQ-like domain AC028_09435 PF00497 Bacterial extracellular solute-binding proteins, family 3 AC028_09450 PF08240 Alcohol dehydrogenase GroES-like domain AC028_09450 PF00107 Zinc-binding dehydrogenase AC028_09460 PF00158 Sigma-54 interaction domain AC028_09460 PF02954 Bacterial regulatory protein, Fis family AC028_09460 PF01590 GAF domain AC028_09465 PF00294 pfkB family carbohydrate kinase AC028_09475 PF04085 rod shape-determining protein MreC AC028_09485 PF00905 Penicillin binding protein transpeptidase domain AC028_09485 PF03717 Penicillin-binding Protein dimerisation domain AC028_09490 PF01098 Cell cycle protein AC028_09495 PF00295 Glycosyl hydrolases family 28 AC028_09500 PF13406 Transglycosylase SLT domain AC028_09505 PF03330 Lytic transglycolase AC028_09505 PF05036 Sporulation related domain AC028_09510 PF00768 D-alanyl-D-alanine carboxypeptidase AC028_09510 PF07943 Penicillin-binding protein 5, C-terminal domain AC028_09520 PF04359 Protein of unknown function (DUF493) AC028_09525 PF03099 Biotin/lipoate A/B protein ligase family AC028_09530 PF04055 Radical SAM superfamily AC028_09530 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AC028_09535 PF03572 Peptidase family S41 AC028_09535 PF11818 C-terminal domain of tail specific protease (DUF3340) AC028_09535 PF00595 PDZ domain AC028_09535 PF17804 Tail specific protease N-terminal domain AC028_09545 PF03466 LysR substrate binding domain AC028_09545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_09555 PF01467 Cytidylyltransferase-like AC028_09555 PF00293 NUDIX domain AC028_09590 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AC028_09590 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AC028_09600 PF04972 BON domain AC028_09605 PF00360 Phytochrome region AC028_09605 PF08446 PAS fold AC028_09605 PF00512 His Kinase A (phospho-acceptor) domain AC028_09605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_09605 PF01590 GAF domain AC028_09610 PF00072 Response regulator receiver domain AC028_09615 PF00512 His Kinase A (phospho-acceptor) domain AC028_09615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_09620 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AC028_09665 PF00263 Bacterial type II and III secretion system protein AC028_09665 PF03958 Bacterial type II/III secretion system short domain AC028_09670 PF00437 Type II/IV secretion system protein AC028_09675 PF00482 Type II secretion system (T2SS), protein F AC028_09680 PF08334 Type II secretion system (T2SS), protein G AC028_09680 PF07963 Prokaryotic N-terminal methylation motif AC028_09685 PF07963 Prokaryotic N-terminal methylation motif AC028_09685 PF12019 Type II transport protein GspH AC028_09690 PF02501 Type II secretion system (T2SS), protein I AC028_09690 PF07963 Prokaryotic N-terminal methylation motif AC028_09695 PF07963 Prokaryotic N-terminal methylation motif AC028_09695 PF11612 Type II secretion system (T2SS), protein J AC028_09700 PF03934 Type II secretion system (T2SS), protein K AC028_09725 PF16355 Domain of unknown function (DUF4982) AC028_09725 PF02837 Glycosyl hydrolases family 2, sugar binding domain AC028_09725 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AC028_09725 PF00703 Glycosyl hydrolases family 2 AC028_09725 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AC028_09745 PF07690 Major Facilitator Superfamily AC028_09750 PF00356 Bacterial regulatory proteins, lacI family AC028_09755 PF01380 SIS domain AC028_09760 PF01979 Amidohydrolase family AC028_09775 PF12627 Probable RNA and SrmB- binding site of polymerase A AC028_09775 PF01966 HD domain AC028_09775 PF01743 Poly A polymerase head domain AC028_09780 PF05199 GMC oxidoreductase AC028_09780 PF00732 GMC oxidoreductase AC028_09785 PF00171 Aldehyde dehydrogenase family AC028_09790 PF02028 BCCT, betaine/carnitine/choline family transporter AC028_09800 PF01323 DSBA-like thioredoxin domain AC028_09810 PF00034 Cytochrome c AC028_09815 PF01926 50S ribosome-binding GTPase AC028_09820 PF00753 Metallo-beta-lactamase superfamily AC028_09820 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AC028_09820 PF10996 Beta-Casp domain AC028_09830 PF04107 Glutamate-cysteine ligase family 2(GCS2) AC028_09840 PF00672 HAMP domain AC028_09840 PF00512 His Kinase A (phospho-acceptor) domain AC028_09840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_09845 PF00486 Transcriptional regulatory protein, C terminal AC028_09845 PF00072 Response regulator receiver domain AC028_09860 PF02583 Metal-sensitive transcriptional repressor AC028_09865 PF08240 Alcohol dehydrogenase GroES-like domain AC028_09865 PF00107 Zinc-binding dehydrogenase AC028_09870 PF04828 Glutathione-dependent formaldehyde-activating enzyme AC028_09875 PF00756 Putative esterase AC028_09885 PF00392 Bacterial regulatory proteins, gntR family AC028_09885 PF00155 Aminotransferase class I and II AC028_09890 PF02567 Phenazine biosynthesis-like protein AC028_09895 PF00892 EamA-like transporter family AC028_09905 PF12848 ABC transporter AC028_09905 PF00005 ABC transporter AC028_09915 PF00464 Serine hydroxymethyltransferase AC028_09920 PF03477 ATP cone domain AC028_09930 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AC028_09930 PF01872 RibD C-terminal domain AC028_09940 PF00677 Lumazine binding domain AC028_09945 PF00925 GTP cyclohydrolase II AC028_09945 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AC028_09950 PF00885 6,7-dimethyl-8-ribityllumazine synthase AC028_09955 PF01029 NusB family AC028_09960 PF02769 AIR synthase related protein, C-terminal domain AC028_09960 PF00586 AIR synthase related protein, N-terminal domain AC028_09980 PF03814 Potassium-transporting ATPase A subunit AC028_09990 PF02669 K+-transporting ATPase, c chain AC028_09995 PF13492 GAF domain AC028_09995 PF13493 Domain of unknown function (DUF4118) AC028_09995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_09995 PF02702 Osmosensitive K+ channel His kinase sensor domain AC028_09995 PF00512 His Kinase A (phospho-acceptor) domain AC028_10000 PF00486 Transcriptional regulatory protein, C terminal AC028_10000 PF00072 Response regulator receiver domain AC028_10005 PF02913 FAD linked oxidases, C-terminal domain AC028_10005 PF01565 FAD binding domain AC028_10010 PF04307 LexA-binding, inner membrane-associated putative hydrolase AC028_10015 PF02021 Uncharacterised protein family UPF0102 AC028_10025 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AC028_10035 PF02381 MraZ protein, putative antitoxin-like AC028_10040 PF01795 MraW methylase family AC028_10045 PF04999 Cell division protein FtsL AC028_10055 PF00905 Penicillin binding protein transpeptidase domain AC028_10055 PF03717 Penicillin-binding Protein dimerisation domain AC028_10060 PF01225 Mur ligase family, catalytic domain AC028_10060 PF02875 Mur ligase family, glutamate ligase domain AC028_10060 PF08245 Mur ligase middle domain AC028_10065 PF01225 Mur ligase family, catalytic domain AC028_10065 PF08245 Mur ligase middle domain AC028_10065 PF02875 Mur ligase family, glutamate ligase domain AC028_10070 PF00953 Glycosyl transferase family 4 AC028_10075 PF01098 Cell cycle protein AC028_10080 PF04101 Glycosyltransferase family 28 C-terminal domain AC028_10080 PF03033 Glycosyltransferase family 28 N-terminal domain AC028_10085 PF01225 Mur ligase family, catalytic domain AC028_10085 PF02875 Mur ligase family, glutamate ligase domain AC028_10085 PF08245 Mur ligase middle domain AC028_10090 PF01820 D-ala D-ala ligase N-terminus AC028_10090 PF07478 D-ala D-ala ligase C-terminus AC028_10095 PF08478 POTRA domain, FtsQ-type AC028_10095 PF03799 Cell division protein FtsQ AC028_10100 PF02491 SHS2 domain inserted in FTSA AC028_10105 PF12327 FtsZ family, C-terminal domain AC028_10105 PF00091 Tubulin/FtsZ family, GTPase domain AC028_10110 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AC028_10120 PF08525 Opacity-associated protein A N-terminal motif AC028_10120 PF01476 LysM domain AC028_10120 PF01551 Peptidase family M23 AC028_10125 PF07516 SecA Wing and Scaffold domain AC028_10125 PF01043 SecA preprotein cross-linking domain AC028_10125 PF02810 SEC-C motif AC028_10125 PF07517 SecA DEAD-like domain AC028_10130 PF00293 NUDIX domain AC028_10140 PF02219 Methylenetetrahydrofolate reductase AC028_10150 PF14765 Polyketide synthase dehydratase AC028_10150 PF08659 KR domain AC028_10150 PF02801 Beta-ketoacyl synthase, C-terminal domain AC028_10150 PF00109 Beta-ketoacyl synthase, N-terminal domain AC028_10150 PF16197 Ketoacyl-synthetase C-terminal extension AC028_10150 PF00107 Zinc-binding dehydrogenase AC028_10150 PF08240 Alcohol dehydrogenase GroES-like domain AC028_10150 PF00698 Acyl transferase domain AC028_10150 PF00550 Phosphopantetheine attachment site AC028_10155 PF00082 Subtilase family AC028_10155 PF09286 Pro-kumamolisin, activation domain AC028_10165 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AC028_10170 PF00128 Alpha amylase, catalytic domain AC028_10195 PF00685 Sulfotransferase domain AC028_10205 PF13649 Methyltransferase domain AC028_10210 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AC028_10210 PF05221 S-adenosyl-L-homocysteine hydrolase AC028_10225 PF00311 Phosphoenolpyruvate carboxylase AC028_10245 PF01389 OmpA-like transmembrane domain AC028_10245 PF00691 OmpA family AC028_10260 PF00328 Histidine phosphatase superfamily (branch 2) AC028_10265 PF02773 S-adenosylmethionine synthetase, C-terminal domain AC028_10265 PF02772 S-adenosylmethionine synthetase, central domain AC028_10265 PF00438 S-adenosylmethionine synthetase, N-terminal domain AC028_10275 PF13649 Methyltransferase domain AC028_10280 PF01207 Dihydrouridine synthase (Dus) AC028_10290 PF00294 pfkB family carbohydrate kinase AC028_10295 PF01773 Na+ dependent nucleoside transporter N-terminus AC028_10295 PF07670 Nucleoside recognition AC028_10295 PF07662 Na+ dependent nucleoside transporter C-terminus AC028_10300 PF00248 Aldo/keto reductase family AC028_10310 PF00593 TonB dependent receptor AC028_10310 PF07715 TonB-dependent Receptor Plug Domain AC028_10330 PF00528 Binding-protein-dependent transport system inner membrane component AC028_10335 PF00005 ABC transporter AC028_10345 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AC028_10355 PF00005 ABC transporter AC028_10360 PF13472 GDSL-like Lipase/Acylhydrolase family AC028_10365 PF00486 Transcriptional regulatory protein, C terminal AC028_10365 PF00072 Response regulator receiver domain AC028_10370 PF00512 His Kinase A (phospho-acceptor) domain AC028_10370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_10370 PF08521 Two-component sensor kinase N-terminal AC028_10380 PF01219 Prokaryotic diacylglycerol kinase AC028_10400 PF01790 Prolipoprotein diacylglyceryl transferase AC028_10405 PF00303 Thymidylate synthase AC028_10415 PF00186 Dihydrofolate reductase AC028_10420 PF00158 Sigma-54 interaction domain AC028_10425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_10425 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AC028_10430 PF00005 ABC transporter AC028_10435 PF00528 Binding-protein-dependent transport system inner membrane component AC028_10445 PF00296 Luciferase-like monooxygenase AC028_10450 PF03358 NADPH-dependent FMN reductase AC028_10460 PF05598 Transposase domain (DUF772) AC028_10460 PF01609 Transposase DDE domain AC028_10470 PF00296 Luciferase-like monooxygenase AC028_10475 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AC028_10480 PF00528 Binding-protein-dependent transport system inner membrane component AC028_10490 PF00005 ABC transporter AC028_10490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AC028_10495 PF00149 Calcineurin-like phosphoesterase AC028_10500 PF04379 ApaG domain AC028_10505 PF00398 Ribosomal RNA adenine dimethylase AC028_10510 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AC028_10515 PF09312 SurA N-terminal domain AC028_10515 PF00639 PPIC-type PPIASE domain AC028_10520 PF04453 LPS transport system D AC028_10520 PF03968 OstA-like protein AC028_10525 PF00850 Histone deacetylase domain AC028_10530 PF01923 Cobalamin adenosyltransferase AC028_10540 PF01494 FAD binding domain AC028_10545 PF01494 FAD binding domain AC028_10565 PF07729 FCD domain AC028_10565 PF00392 Bacterial regulatory proteins, gntR family AC028_10570 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AC028_10575 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AC028_10575 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit AC028_10580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_10580 PF03466 LysR substrate binding domain AC028_10585 PF00501 AMP-binding enzyme AC028_10585 PF13193 AMP-binding enzyme C-terminal domain AC028_10595 PF00378 Enoyl-CoA hydratase/isomerase AC028_10620 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AC028_10620 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AC028_10625 PF18125 RlmM ferredoxin-like domain AC028_10625 PF01728 FtsJ-like methyltransferase AC028_10650 PF00892 EamA-like transporter family AC028_10660 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AC028_10660 PF00749 tRNA synthetases class I (E and Q), catalytic domain AC028_10675 PF00990 Diguanylate cyclase, GGDEF domain AC028_10675 PF00072 Response regulator receiver domain AC028_10680 PF01627 Hpt domain AC028_10680 PF00072 Response regulator receiver domain AC028_10680 PF00512 His Kinase A (phospho-acceptor) domain AC028_10680 PF17149 Periplasmic sensor domain found in signal transduction proteins AC028_10680 PF00672 HAMP domain AC028_10680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_10685 PF00072 Response regulator receiver domain AC028_10685 PF00196 Bacterial regulatory proteins, luxR family AC028_10695 PF01625 Peptide methionine sulfoxide reductase AC028_10705 PF00923 Transaldolase/Fructose-6-phosphate aldolase AC028_10710 PF01272 Transcription elongation factor, GreA/GreB, C-term AC028_10710 PF14760 Rnk N-terminus AC028_10715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_10715 PF03466 LysR substrate binding domain AC028_10720 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_10720 PF13192 Thioredoxin domain AC028_10725 PF10417 C-terminal domain of 1-Cys peroxiredoxin AC028_10725 PF00578 AhpC/TSA family AC028_10730 PF17827 PrmC N-terminal domain AC028_10730 PF05175 Methyltransferase small domain AC028_10735 PF00561 alpha/beta hydrolase fold AC028_10745 PF00293 NUDIX domain AC028_10750 PF01367 5'-3' exonuclease, C-terminal SAM fold AC028_10750 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AC028_10750 PF01612 3'-5' exonuclease AC028_10750 PF00476 DNA polymerase family A AC028_10780 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AC028_10780 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AC028_10780 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AC028_10800 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AC028_10805 PF02233 NAD(P) transhydrogenase beta subunit AC028_10820 PF01063 Amino-transferase class IV AC028_10825 PF04151 Bacterial pre-peptidase C-terminal domain AC028_10825 PF00082 Subtilase family AC028_10830 PF04151 Bacterial pre-peptidase C-terminal domain AC028_10830 PF00082 Subtilase family AC028_10835 PF04151 Bacterial pre-peptidase C-terminal domain AC028_10835 PF00082 Subtilase family AC028_10840 PF04073 Aminoacyl-tRNA editing domain AC028_10855 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain AC028_10855 PF17189 Glycosyl hydrolase family 30 beta sandwich domain AC028_10865 PF03358 NADPH-dependent FMN reductase AC028_10870 PF03631 Virulence factor BrkB AC028_10875 PF08534 Redoxin AC028_10880 PF00708 Acylphosphatase AC028_10890 PF03976 Polyphosphate kinase 2 (PPK2) AC028_10895 PF00994 Probable molybdopterin binding domain AC028_10905 PF03462 PCRF domain AC028_10905 PF00472 RF-1 domain AC028_10910 PF01488 Shikimate / quinate 5-dehydrogenase AC028_10910 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AC028_10910 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AC028_10920 PF03550 Outer membrane lipoprotein LolB AC028_10925 PF00288 GHMP kinases N terminal domain AC028_10925 PF08544 GHMP kinases C terminal AC028_10935 PF14572 Phosphoribosyl synthetase-associated domain AC028_10935 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AC028_10940 PF14693 Ribosomal protein TL5, C-terminal domain AC028_10940 PF01386 Ribosomal L25p family AC028_10945 PF01195 Peptidyl-tRNA hydrolase AC028_10950 PF06071 Protein of unknown function (DUF933) AC028_10950 PF01926 50S ribosome-binding GTPase AC028_10970 PF03143 Elongation factor Tu C-terminal domain AC028_10970 PF03144 Elongation factor Tu domain 2 AC028_10970 PF00009 Elongation factor Tu GTP binding domain AC028_10980 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AC028_10985 PF02357 Transcription termination factor nusG AC028_10985 PF00467 KOW motif AC028_10990 PF00298 Ribosomal protein L11, RNA binding domain AC028_10990 PF03946 Ribosomal protein L11, N-terminal domain AC028_10995 PF00687 Ribosomal protein L1p/L10e family AC028_11000 PF00466 Ribosomal protein L10 AC028_11005 PF00542 Ribosomal protein L7/L12 C-terminal domain AC028_11005 PF16320 Ribosomal protein L7/L12 dimerisation domain AC028_11010 PF00562 RNA polymerase Rpb2, domain 6 AC028_11010 PF04565 RNA polymerase Rpb2, domain 3 AC028_11010 PF04561 RNA polymerase Rpb2, domain 2 AC028_11010 PF04560 RNA polymerase Rpb2, domain 7 AC028_11010 PF04563 RNA polymerase beta subunit AC028_11010 PF10385 RNA polymerase beta subunit external 1 domain AC028_11015 PF04997 RNA polymerase Rpb1, domain 1 AC028_11015 PF00623 RNA polymerase Rpb1, domain 2 AC028_11015 PF04998 RNA polymerase Rpb1, domain 5 AC028_11015 PF05000 RNA polymerase Rpb1, domain 4 AC028_11015 PF04983 RNA polymerase Rpb1, domain 3 AC028_11020 PF00164 Ribosomal protein S12/S23 AC028_11025 PF00177 Ribosomal protein S7p/S5e AC028_11030 PF14492 Elongation Factor G, domain II AC028_11030 PF03144 Elongation factor Tu domain 2 AC028_11030 PF00679 Elongation factor G C-terminus AC028_11030 PF00009 Elongation factor Tu GTP binding domain AC028_11030 PF03764 Elongation factor G, domain IV AC028_11035 PF00009 Elongation factor Tu GTP binding domain AC028_11035 PF03144 Elongation factor Tu domain 2 AC028_11035 PF03143 Elongation factor Tu C-terminal domain AC028_11040 PF00338 Ribosomal protein S10p/S20e AC028_11045 PF00297 Ribosomal protein L3 AC028_11050 PF00573 Ribosomal protein L4/L1 family AC028_11055 PF00276 Ribosomal protein L23 AC028_11060 PF03947 Ribosomal Proteins L2, C-terminal domain AC028_11060 PF00181 Ribosomal Proteins L2, RNA binding domain AC028_11065 PF00203 Ribosomal protein S19 AC028_11070 PF00237 Ribosomal protein L22p/L17e AC028_11075 PF00189 Ribosomal protein S3, C-terminal domain AC028_11075 PF07650 KH domain AC028_11080 PF00252 Ribosomal protein L16p/L10e AC028_11085 PF00831 Ribosomal L29 protein AC028_11090 PF00366 Ribosomal protein S17 AC028_11095 PF00238 Ribosomal protein L14p/L23e AC028_11100 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AC028_11100 PF00467 KOW motif AC028_11105 PF00281 Ribosomal protein L5 AC028_11105 PF00673 ribosomal L5P family C-terminus AC028_11110 PF00253 Ribosomal protein S14p/S29e AC028_11115 PF00410 Ribosomal protein S8 AC028_11120 PF00347 Ribosomal protein L6 AC028_11125 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AC028_11130 PF03719 Ribosomal protein S5, C-terminal domain AC028_11130 PF00333 Ribosomal protein S5, N-terminal domain AC028_11135 PF00327 Ribosomal protein L30p/L7e AC028_11140 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AC028_11145 PF00344 SecY translocase AC028_11150 PF00416 Ribosomal protein S13/S18 AC028_11155 PF00411 Ribosomal protein S11 AC028_11160 PF00163 Ribosomal protein S4/S9 N-terminal domain AC028_11160 PF01479 S4 domain AC028_11165 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AC028_11165 PF01000 RNA polymerase Rpb3/RpoA insert domain AC028_11165 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AC028_11170 PF01196 Ribosomal protein L17 AC028_11175 PF02600 Disulfide bond formation protein DsbB AC028_11190 PF01474 Class-II DAHP synthetase family AC028_11200 PF01425 Amidase AC028_11215 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AC028_11220 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AC028_11220 PF00056 lactate/malate dehydrogenase, NAD binding domain AC028_11225 PF00043 Glutathione S-transferase, C-terminal domain AC028_11225 PF02798 Glutathione S-transferase, N-terminal domain AC028_11235 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_11235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AC028_11240 PF00107 Zinc-binding dehydrogenase AC028_11240 PF08240 Alcohol dehydrogenase GroES-like domain AC028_11245 PF00691 OmpA family AC028_11245 PF05736 OprF membrane domain AC028_11255 PF00849 RNA pseudouridylate synthase AC028_11265 PF00155 Aminotransferase class I and II AC028_11275 PF00528 Binding-protein-dependent transport system inner membrane component AC028_11280 PF00528 Binding-protein-dependent transport system inner membrane component AC028_11285 PF17850 CysA C-terminal regulatory domain AC028_11285 PF12857 TOBE-like domain AC028_11285 PF00005 ABC transporter AC028_11295 PF08240 Alcohol dehydrogenase GroES-like domain AC028_11295 PF00107 Zinc-binding dehydrogenase AC028_11305 PF04185 Phosphoesterase family AC028_11305 PF05506 Domain of unknown function (DUF756) AC028_11310 PF10459 Peptidase S46 AC028_11315 PF00300 Histidine phosphatase superfamily (branch 1) AC028_11320 PF08245 Mur ligase middle domain AC028_11320 PF02875 Mur ligase family, glutamate ligase domain AC028_11335 PF00156 Phosphoribosyl transferase domain AC028_11340 PF04305 Protein of unknown function (DUF455) AC028_11355 PF00149 Calcineurin-like phosphoesterase AC028_11360 PF01569 PAP2 superfamily AC028_11365 PF00534 Glycosyl transferases group 1 AC028_11365 PF13439 Glycosyltransferase Family 4 AC028_11370 PF02541 Ppx/GppA phosphatase family AC028_11375 PF17941 Polyphosphate kinase C-terminal domain 1 AC028_11375 PF13089 Polyphosphate kinase N-terminal domain AC028_11375 PF02503 Polyphosphate kinase middle domain AC028_11375 PF13090 Polyphosphate kinase C-terminal domain 2 AC028_11380 PF11808 Phosphate regulon sensor protein PhoR AC028_11380 PF00512 His Kinase A (phospho-acceptor) domain AC028_11380 PF00989 PAS fold AC028_11380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_11385 PF00486 Transcriptional regulatory protein, C terminal AC028_11385 PF00072 Response regulator receiver domain AC028_11390 PF01435 Peptidase family M48 AC028_11390 PF13181 Tetratricopeptide repeat AC028_11395 PF00462 Glutaredoxin AC028_11405 PF00180 Isocitrate/isopropylmalate dehydrogenase AC028_11450 PF05698 Bacterial trigger factor protein (TF) C-terminus AC028_11450 PF05697 Bacterial trigger factor protein (TF) AC028_11455 PF00574 Clp protease AC028_11460 PF07724 AAA domain (Cdc48 subfamily) AC028_11460 PF06689 ClpX C4-type zinc finger AC028_11460 PF10431 C-terminal, D2-small domain, of ClpB protein AC028_11465 PF02190 ATP-dependent protease La (LON) substrate-binding domain AC028_11465 PF05362 Lon protease (S16) C-terminal proteolytic domain AC028_11465 PF00004 ATPase family associated with various cellular activities (AAA) AC028_11470 PF00216 Bacterial DNA-binding protein AC028_11500 PF16123 Hydroxyacylglutathione hydrolase C-terminus AC028_11500 PF00753 Metallo-beta-lactamase superfamily AC028_11510 PF00075 RNase H AC028_11515 PF00929 Exonuclease AC028_11535 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AC028_11545 PF12706 Beta-lactamase superfamily domain AC028_11545 PF00753 Metallo-beta-lactamase superfamily AC028_11550 PF06463 Molybdenum Cofactor Synthesis C AC028_11550 PF04055 Radical SAM superfamily AC028_11560 PF01967 MoaC family AC028_11565 PF02597 ThiS family AC028_11570 PF02391 MoaE protein AC028_11580 PF12169 DNA polymerase III subunits gamma and tau domain III AC028_11580 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AC028_11580 PF12170 DNA polymerase III tau subunit V interacting with alpha AC028_11585 PF02575 YbaB/EbfC DNA-binding family AC028_11590 PF13662 Toprim domain AC028_11590 PF02132 RecR protein AC028_11595 PF01230 HIT domain AC028_11605 PF01841 Transglutaminase-like superfamily AC028_11605 PF11992 Domain of unknown function (DUF3488) AC028_11605 PF13559 Domain of unknown function (DUF4129) AC028_11615 PF07726 ATPase family associated with various cellular activities (AAA) AC028_11615 PF17863 AAA lid domain AC028_11635 PF02545 Maf-like protein AC028_11640 PF02620 Large ribosomal RNA subunit accumulation protein YceD AC028_11645 PF01783 Ribosomal L32p protein family AC028_11650 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AC028_11650 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AC028_11660 PF00698 Acyl transferase domain AC028_11670 PF00550 Phosphopantetheine attachment site AC028_11675 PF02801 Beta-ketoacyl synthase, C-terminal domain AC028_11675 PF00109 Beta-ketoacyl synthase, N-terminal domain AC028_11680 PF00425 chorismate binding enzyme AC028_11680 PF04715 Anthranilate synthase component I, N terminal region AC028_11685 PF02618 YceG-like family AC028_11690 PF09115 DNA polymerase III, delta subunit, C terminal AC028_11710 PF06506 Propionate catabolism activator AC028_11710 PF00158 Sigma-54 interaction domain AC028_11710 PF02954 Bacterial regulatory protein, Fis family AC028_11720 PF00285 Citrate synthase, C-terminal domain AC028_11725 PF00330 Aconitase family (aconitate hydratase) AC028_11725 PF00694 Aconitase C-terminal domain AC028_11735 PF04303 PrpF protein AC028_11740 PF07715 TonB-dependent Receptor Plug Domain AC028_11740 PF00593 TonB dependent receptor AC028_11750 PF17962 Bacterial macroglobulin domain 6 AC028_11750 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AC028_11750 PF11974 Bacterial alpha-2-macroglobulin MG3 domain AC028_11750 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain AC028_11750 PF07703 Alpha-2-macroglobulin bait region domain AC028_11750 PF00207 Alpha-2-macroglobulin family AC028_11750 PF01835 MG2 domain AC028_11750 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain AC028_11765 PF00905 Penicillin binding protein transpeptidase domain AC028_11765 PF00912 Transglycosylase AC028_11765 PF06832 Penicillin-Binding Protein C-terminus Family AC028_11775 PF08534 Redoxin AC028_11785 PF01556 DnaJ C terminal domain AC028_11785 PF00226 DnaJ domain AC028_11790 PF00072 Response regulator receiver domain AC028_11795 PF01145 SPFH domain / Band 7 family AC028_11795 PF12221 Bacterial membrane protein N terminal AC028_11800 PF01145 SPFH domain / Band 7 family AC028_11810 PF00709 Adenylosuccinate synthetase AC028_11815 PF01433 Peptidase family M1 domain AC028_11815 PF11838 ERAP1-like C-terminal domain AC028_11830 PF00440 Bacterial regulatory proteins, tetR family AC028_11845 PF01527 Transposase AC028_11850 PF13333 Integrase core domain AC028_11850 PF00665 Integrase core domain AC028_11850 PF13276 HTH-like domain AC028_11885 PF02384 N-6 DNA Methylase AC028_11890 PF08780 Nucleotidyltransferase substrate binding protein like AC028_11895 PF01420 Type I restriction modification DNA specificity domain AC028_11900 PF18766 SWI2/SNF2 ATPase AC028_11900 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AC028_11900 PF11867 Domain of unknown function (DUF3387) AC028_11925 PF13456 Reverse transcriptase-like AC028_11925 PF00300 Histidine phosphatase superfamily (branch 1) AC028_11930 PF01256 Carbohydrate kinase AC028_11945 PF00723 Glycosyl hydrolases family 15 AC028_11955 PF07971 Glycosyl hydrolase family 92 AC028_11955 PF17678 Glycosyl hydrolase family 92 N-terminal domain AC028_11960 PF00106 short chain dehydrogenase AC028_11975 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_11995 PF17755 UvrA DNA-binding domain AC028_12000 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AC028_12000 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AC028_12005 PF03450 CO dehydrogenase flavoprotein C-terminal domain AC028_12005 PF00941 FAD binding domain in molybdopterin dehydrogenase AC028_12010 PF00111 2Fe-2S iron-sulfur cluster binding domain AC028_12010 PF01799 [2Fe-2S] binding domain AC028_12045 PF00717 Peptidase S24-like AC028_12045 PF01726 LexA DNA binding domain AC028_12065 PF02811 PHP domain AC028_12065 PF07733 Bacterial DNA polymerase III alpha NTPase domain AC028_12065 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AC028_12065 PF14579 Helix-hairpin-helix motif AC028_12080 PF03169 OPT oligopeptide transporter protein AC028_12095 PF07676 WD40-like Beta Propeller Repeat AC028_12095 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AC028_12095 PF00326 Prolyl oligopeptidase family AC028_12115 PF02311 AraC-like ligand binding domain AC028_12115 PF12833 Helix-turn-helix domain AC028_12130 PF06628 Catalase-related immune-responsive AC028_12130 PF00199 Catalase AC028_12130 PF18011 C-terminal domain found in long catalases AC028_12135 PF00248 Aldo/keto reductase family AC028_12140 PF00135 Carboxylesterase family AC028_12145 PF02347 Glycine cleavage system P-protein AC028_12150 PF07690 Major Facilitator Superfamily AC028_12165 PF08019 Phosphoethanolamine transferase EptA/EptB AC028_12165 PF00884 Sulfatase AC028_12180 PF00486 Transcriptional regulatory protein, C terminal AC028_12180 PF00072 Response regulator receiver domain AC028_12185 PF08521 Two-component sensor kinase N-terminal AC028_12185 PF00512 His Kinase A (phospho-acceptor) domain AC028_12185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_12195 PF03776 Septum formation topological specificity factor MinE AC028_12200 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AC028_12205 PF03775 Septum formation inhibitor MinC, C-terminal domain AC028_12205 PF05209 Septum formation inhibitor MinC, N-terminal domain AC028_12215 PF07730 Histidine kinase AC028_12220 PF00196 Bacterial regulatory proteins, luxR family AC028_12220 PF00072 Response regulator receiver domain AC028_12235 PF00730 HhH-GPD superfamily base excision DNA repair protein AC028_12260 PF02222 ATP-grasp domain AC028_12270 PF04376 Arginine-tRNA-protein transferase, N terminus AC028_12270 PF04377 Arginine-tRNA-protein transferase, C terminus AC028_12295 PF00378 Enoyl-CoA hydratase/isomerase AC028_12310 PF17755 UvrA DNA-binding domain AC028_12310 PF00005 ABC transporter AC028_12310 PF17760 UvrA interaction domain AC028_12315 PF00829 Ribosomal prokaryotic L21 protein AC028_12320 PF01016 Ribosomal L27 protein AC028_12325 PF01018 GTP1/OBG AC028_12325 PF01926 50S ribosome-binding GTPase AC028_12330 PF01649 Ribosomal protein S20 AC028_12335 PF03023 Lipid II flippase MurJ AC028_12340 PF06574 FAD synthetase AC028_12340 PF01687 Riboflavin kinase AC028_12345 PF06827 Zinc finger found in FPG and IleRS AC028_12345 PF00133 tRNA synthetases class I (I, L, M and V) AC028_12345 PF08264 Anticodon-binding domain of tRNA AC028_12350 PF01252 Signal peptidase (SPase) II AC028_12355 PF02401 LytB protein AC028_12385 PF06481 COX Aromatic Rich Motif AC028_12385 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AC028_12390 PF00115 Cytochrome C and Quinol oxidase polypeptide I AC028_12395 PF00510 Cytochrome c oxidase subunit III AC028_12400 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AC028_12410 PF18073 Rubredoxin metal binding domain AC028_12415 PF05656 Protein of unknown function (DUF805) AC028_12425 PF12833 Helix-turn-helix domain AC028_12430 PF00183 Hsp90 protein AC028_12430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_12440 PF08678 Rsbr N terminal AC028_12440 PF01740 STAS domain AC028_12445 PF01740 STAS domain AC028_12450 PF13581 Histidine kinase-like ATPase domain AC028_12460 PF00512 His Kinase A (phospho-acceptor) domain AC028_12460 PF00672 HAMP domain AC028_12460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_12460 PF00072 Response regulator receiver domain AC028_12460 PF17149 Periplasmic sensor domain found in signal transduction proteins AC028_12460 PF01627 Hpt domain AC028_12465 PF08448 PAS fold AC028_12465 PF00072 Response regulator receiver domain AC028_12465 PF00512 His Kinase A (phospho-acceptor) domain AC028_12465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_12465 PF13188 PAS domain AC028_12470 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AC028_12470 PF04616 Glycosyl hydrolases family 43 AC028_12475 PF07715 TonB-dependent Receptor Plug Domain AC028_12475 PF00593 TonB dependent receptor AC028_12480 PF00085 Thioredoxin AC028_12485 PF07237 Protein of unknown function (DUF1428) AC028_12495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_12495 PF00512 His Kinase A (phospho-acceptor) domain AC028_12495 PF13493 Domain of unknown function (DUF4118) AC028_12495 PF13492 GAF domain AC028_12495 PF02702 Osmosensitive K+ channel His kinase sensor domain AC028_12500 PF01339 CheB methylesterase AC028_12505 PF01739 CheR methyltransferase, SAM binding domain AC028_12505 PF03705 CheR methyltransferase, all-alpha domain AC028_12510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_12510 PF00512 His Kinase A (phospho-acceptor) domain AC028_12510 PF00672 HAMP domain AC028_12510 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AC028_12510 PF01627 Hpt domain AC028_12510 PF00072 Response regulator receiver domain AC028_12515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_12515 PF13426 PAS domain AC028_12515 PF00072 Response regulator receiver domain AC028_12520 PF00072 Response regulator receiver domain AC028_12530 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AC028_12540 PF01263 Aldose 1-epimerase AC028_12545 PF01578 Cytochrome C assembly protein AC028_12550 PF02881 SRP54-type protein, helical bundle domain AC028_12550 PF00448 SRP54-type protein, GTPase domain AC028_12550 PF02978 Signal peptide binding domain AC028_12560 PF03060 Nitronate monooxygenase AC028_12565 PF01063 Amino-transferase class IV AC028_12570 PF00886 Ribosomal protein S16 AC028_12575 PF05239 PRC-barrel domain AC028_12575 PF01782 RimM N-terminal domain AC028_12580 PF01746 tRNA (Guanine-1)-methyltransferase AC028_12585 PF01245 Ribosomal protein L19 AC028_12590 PF01554 MatE AC028_12610 PF01479 S4 domain AC028_12615 PF00141 Peroxidase AC028_12625 PF00488 MutS domain V AC028_12625 PF01624 MutS domain I AC028_12625 PF05190 MutS family domain IV AC028_12625 PF05192 MutS domain III AC028_12625 PF05188 MutS domain II AC028_12635 PF03301 Tryptophan 2,3-dioxygenase AC028_12675 PF00703 Glycosyl hydrolases family 2 AC028_12675 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AC028_12675 PF02837 Glycosyl hydrolases family 2, sugar binding domain AC028_12675 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AC028_12675 PF16355 Domain of unknown function (DUF4982) AC028_12680 PF07745 Glycosyl hydrolase family 53 AC028_12690 PF09856 Predicted transcriptional regulator (DUF2083) AC028_12690 PF06114 IrrE N-terminal-like domain AC028_12690 PF01381 Helix-turn-helix AC028_12695 PF00171 Aldehyde dehydrogenase family AC028_12700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_12700 PF02770 Acyl-CoA dehydrogenase, middle domain AC028_12700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_12705 PF00378 Enoyl-CoA hydratase/isomerase AC028_12710 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AC028_12710 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AC028_12710 PF00378 Enoyl-CoA hydratase/isomerase AC028_12715 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AC028_12715 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AC028_12720 PF01545 Cation efflux family AC028_12725 PF13683 Integrase core domain AC028_12725 PF13276 HTH-like domain AC028_12730 PF01527 Transposase AC028_12740 PF01527 Transposase AC028_12745 PF13276 HTH-like domain AC028_12745 PF13333 Integrase core domain AC028_12745 PF00665 Integrase core domain AC028_12750 PF05598 Transposase domain (DUF772) AC028_12750 PF01609 Transposase DDE domain AC028_12755 PF05598 Transposase domain (DUF772) AC028_12755 PF01609 Transposase DDE domain AC028_12770 PF03033 Glycosyltransferase family 28 N-terminal domain AC028_12775 PF01757 Acyltransferase family AC028_12780 PF00106 short chain dehydrogenase AC028_12795 PF03485 Arginyl tRNA synthetase N terminal domain AC028_12795 PF00750 tRNA synthetases class I (R) AC028_12795 PF05746 DALR anticodon binding domain AC028_12800 PF04002 RadC-like JAB domain AC028_12805 PF02441 Flavoprotein AC028_12805 PF04127 DNA / pantothenate metabolism flavoprotein AC028_12810 PF00692 dUTPase AC028_12815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AC028_12815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AC028_12815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AC028_12815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AC028_12830 PF00535 Glycosyl transferase family 2 AC028_12835 PF01370 NAD dependent epimerase/dehydratase family AC028_12850 PF02195 ParB-like nuclease domain AC028_12850 PF17762 HTH domain found in ParB protein AC028_12855 PF13614 AAA domain AC028_12865 PF00156 Phosphoribosyl transferase domain AC028_12870 PF03372 Endonuclease/Exonuclease/phosphatase family AC028_12875 PF07690 Major Facilitator Superfamily AC028_12885 PF03702 Anhydro-N-acetylmuramic acid kinase AC028_12890 PF01551 Peptidase family M23 AC028_12890 PF04225 Opacity-associated protein A LysM-like domain AC028_12895 PF00579 tRNA synthetases class I (W and Y) AC028_12925 PF14850 DNA-binding domain of Proline dehydrogenase AC028_12925 PF01619 Proline dehydrogenase AC028_12925 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AC028_12925 PF00171 Aldehyde dehydrogenase family AC028_12935 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AC028_12935 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AC028_12940 PF00115 Cytochrome C and Quinol oxidase polypeptide I AC028_12950 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AC028_12955 PF00510 Cytochrome c oxidase subunit III AC028_12980 PF01040 UbiA prenyltransferase family AC028_12990 PF13593 SBF-like CPA transporter family (DUF4137) AC028_12995 PF10410 DnaB-helicase binding domain of primase AC028_12995 PF08278 DNA primase DnaG DnaB-binding AC028_12995 PF01807 CHC2 zinc finger AC028_12995 PF08275 DNA primase catalytic core, N-terminal domain AC028_13000 PF03631 Virulence factor BrkB AC028_13005 PF09424 Yqey-like protein AC028_13010 PF01165 Ribosomal protein S21 AC028_13015 PF00814 Glycoprotease family AC028_13020 PF02152 Dihydroneopterin aldolase AC028_13025 PF00933 Glycosyl hydrolase family 3 N terminal domain AC028_13025 PF01915 Glycosyl hydrolase family 3 C-terminal domain AC028_13025 PF14310 Fibronectin type III-like domain AC028_13030 PF07995 Glucose / Sorbosone dehydrogenase AC028_13035 PF05360 yiaA/B two helix domain AC028_13050 PF13520 Amino acid permease AC028_13060 PF13378 Enolase C-terminal domain-like AC028_13060 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AC028_13070 PF01510 N-acetylmuramoyl-L-alanine amidase AC028_13075 PF01427 D-ala-D-ala dipeptidase AC028_13120 PF07063 Domain of unknown function (DUF1338) AC028_13135 PF00873 AcrB/AcrD/AcrF family AC028_13140 PF00873 AcrB/AcrD/AcrF family AC028_13145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC028_13150 PF07687 Peptidase dimerisation domain AC028_13150 PF01546 Peptidase family M20/M25/M40 AC028_13155 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AC028_13155 PF14489 QueF-like protein AC028_13170 PF03971 Monomeric isocitrate dehydrogenase AC028_13180 PF03466 LysR substrate binding domain AC028_13180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_13185 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AC028_13190 PF07498 Rho termination factor, N-terminal domain AC028_13190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AC028_13190 PF07497 Rho termination factor, RNA-binding domain AC028_13195 PF00085 Thioredoxin AC028_13200 PF00271 Helicase conserved C-terminal domain AC028_13200 PF00270 DEAD/DEAH box helicase AC028_13200 PF12300 ATP-dependent RNA helicase RhlB AC028_13205 PF00005 ABC transporter AC028_13210 PF18075 FtsX extracellular domain AC028_13215 PF00072 Response regulator receiver domain AC028_13215 PF01339 CheB methylesterase AC028_13220 PF03167 Uracil DNA glycosylase superfamily AC028_13225 PF04542 Sigma-70 region 2 AC028_13225 PF04545 Sigma-70, region 4 AC028_13230 PF03458 UPF0126 domain AC028_13235 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_13250 PF00043 Glutathione S-transferase, C-terminal domain AC028_13250 PF13417 Glutathione S-transferase, N-terminal domain AC028_13275 PF01554 MatE AC028_13280 PF01343 Peptidase family S49 AC028_13310 PF01300 Telomere recombination AC028_13315 PF01131 DNA topoisomerase AC028_13315 PF01751 Toprim domain AC028_13315 PF13368 Topoisomerase C-terminal repeat AC028_13325 PF00114 Pilin (bacterial filament) AC028_13325 PF07963 Prokaryotic N-terminal methylation motif AC028_13330 PF04361 Protein of unknown function (DUF494) AC028_13335 PF17782 DprA winged helix domain AC028_13335 PF02481 DNA recombination-mediator protein A AC028_13340 PF01476 LysM domain AC028_13345 PF01327 Polypeptide deformylase AC028_13350 PF00551 Formyl transferase AC028_13350 PF02911 Formyl transferase, C-terminal domain AC028_13355 PF01189 16S rRNA methyltransferase RsmB/F AC028_13355 PF01029 NusB family AC028_13370 PF00535 Glycosyl transferase family 2 AC028_13390 PF00925 GTP cyclohydrolase II AC028_13405 PF03279 Bacterial lipid A biosynthesis acyltransferase AC028_13410 PF02580 D-Tyr-tRNA(Tyr) deacylase AC028_13415 PF04546 Sigma-70, non-essential region AC028_13415 PF04542 Sigma-70 region 2 AC028_13415 PF04539 Sigma-70 region 3 AC028_13415 PF00140 Sigma-70 factor, region 1.2 AC028_13415 PF03979 Sigma-70 factor, region 1.1 AC028_13415 PF04545 Sigma-70, region 4 AC028_13430 PF00589 Phage integrase family AC028_13445 PF13276 HTH-like domain AC028_13445 PF00665 Integrase core domain AC028_13445 PF13333 Integrase core domain AC028_13450 PF01527 Transposase AC028_13460 PF02384 N-6 DNA Methylase AC028_13480 PF01527 Transposase AC028_13485 PF13276 HTH-like domain AC028_13485 PF13683 Integrase core domain AC028_13555 PF01527 Transposase AC028_13560 PF00665 Integrase core domain AC028_13560 PF13276 HTH-like domain AC028_13560 PF13333 Integrase core domain AC028_13565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_13565 PF00672 HAMP domain AC028_13565 PF02203 Tar ligand binding domain homologue AC028_13580 PF01042 Endoribonuclease L-PSP AC028_13585 PF03466 LysR substrate binding domain AC028_13585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_13595 PF00005 ABC transporter AC028_13610 PF00593 TonB dependent receptor AC028_13610 PF07715 TonB-dependent Receptor Plug Domain AC028_13655 PF00107 Zinc-binding dehydrogenase AC028_13655 PF08240 Alcohol dehydrogenase GroES-like domain AC028_13655 PF13823 Alcohol dehydrogenase GroES-associated AC028_13670 PF00005 ABC transporter AC028_13670 PF00664 ABC transporter transmembrane region AC028_13680 PF03275 UDP-galactopyranose mutase AC028_13690 PF16363 GDP-mannose 4,6 dehydratase AC028_13710 PF02322 Cytochrome bd terminal oxidase subunit II AC028_13715 PF01654 Cytochrome bd terminal oxidase subunit I AC028_13725 PF00158 Sigma-54 interaction domain AC028_13725 PF00072 Response regulator receiver domain AC028_13725 PF02954 Bacterial regulatory protein, Fis family AC028_13740 PF01739 CheR methyltransferase, SAM binding domain AC028_13740 PF01339 CheB methylesterase AC028_13740 PF03705 CheR methyltransferase, all-alpha domain AC028_13740 PF08448 PAS fold AC028_13760 PF05067 Manganese containing catalase AC028_13765 PF05974 Domain of unknown function (DUF892) AC028_13780 PF00672 HAMP domain AC028_13780 PF06580 Histidine kinase AC028_13780 PF02743 Cache domain AC028_13780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_13785 PF00072 Response regulator receiver domain AC028_13785 PF04397 LytTr DNA-binding domain AC028_13795 PF13520 Amino acid permease AC028_13810 PF01431 Peptidase family M13 AC028_13810 PF05649 Peptidase family M13 AC028_13820 PF00248 Aldo/keto reductase family AC028_13825 PF03358 NADPH-dependent FMN reductase AC028_13830 PF03466 LysR substrate binding domain AC028_13830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_13840 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AC028_13850 PF03167 Uracil DNA glycosylase superfamily AC028_13855 PF02469 Fasciclin domain AC028_13860 PF00999 Sodium/hydrogen exchanger family AC028_13865 PF00005 ABC transporter AC028_13870 PF01061 ABC-2 type transporter AC028_13895 PF00691 OmpA family AC028_13895 PF13677 Membrane MotB of proton-channel complex MotA/MotB AC028_13900 PF01618 MotA/TolQ/ExbB proton channel family AC028_13910 PF01641 SelR domain AC028_13920 PF01037 Lrp/AsnC ligand binding domain AC028_13925 PF01266 FAD dependent oxidoreductase AC028_13930 PF01168 Alanine racemase, N-terminal domain AC028_13930 PF00842 Alanine racemase, C-terminal domain AC028_13950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_13950 PF00512 His Kinase A (phospho-acceptor) domain AC028_13950 PF00989 PAS fold AC028_13960 PF07995 Glucose / Sorbosone dehydrogenase AC028_13970 PF08468 Methyltransferase small domain N-terminal AC028_13970 PF05175 Methyltransferase small domain AC028_13975 PF00849 RNA pseudouridylate synthase AC028_13975 PF01479 S4 domain AC028_13980 PF13419 Haloacid dehalogenase-like hydrolase AC028_14005 PF00072 Response regulator receiver domain AC028_14005 PF00989 PAS fold AC028_14005 PF01627 Hpt domain AC028_14005 PF18415 Histidine kinase receptor ArcB trans-membrane domain AC028_14005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_14005 PF00512 His Kinase A (phospho-acceptor) domain AC028_14015 PF04461 Protein of unknown function (DUF520) AC028_14020 PF00892 EamA-like transporter family AC028_14025 PF00005 ABC transporter AC028_14025 PF09383 NIL domain AC028_14030 PF00528 Binding-protein-dependent transport system inner membrane component AC028_14035 PF03180 NLPA lipoprotein AC028_14055 PF05598 Transposase domain (DUF772) AC028_14055 PF01609 Transposase DDE domain AC028_14075 PF02817 e3 binding domain AC028_14075 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AC028_14075 PF00364 Biotin-requiring enzyme AC028_14085 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_14085 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AC028_14105 PF00119 ATP synthase A chain AC028_14110 PF00137 ATP synthase subunit C AC028_14115 PF00430 ATP synthase B/B' CF(0) AC028_14120 PF00213 ATP synthase delta (OSCP) subunit AC028_14125 PF00306 ATP synthase alpha/beta chain, C terminal domain AC028_14125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AC028_14125 PF02874 ATP synthase alpha/beta family, beta-barrel domain AC028_14130 PF00231 ATP synthase AC028_14135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AC028_14135 PF02874 ATP synthase alpha/beta family, beta-barrel domain AC028_14140 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AC028_14140 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AC028_14160 PF12804 MobA-like NTP transferase domain AC028_14160 PF00132 Bacterial transferase hexapeptide (six repeats) AC028_14160 PF14602 Hexapeptide repeat of succinyl-transferase AC028_14165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_14165 PF00512 His Kinase A (phospho-acceptor) domain AC028_14170 PF00158 Sigma-54 interaction domain AC028_14170 PF02954 Bacterial regulatory protein, Fis family AC028_14170 PF00072 Response regulator receiver domain AC028_14180 PF12704 MacB-like periplasmic core domain AC028_14180 PF02687 FtsX-like permease family AC028_14180 PF00005 ABC transporter AC028_14185 PF02687 FtsX-like permease family AC028_14185 PF12704 MacB-like periplasmic core domain AC028_14190 PF01609 Transposase DDE domain AC028_14190 PF05598 Transposase domain (DUF772) AC028_14195 PF00005 ABC transporter AC028_14200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC028_14205 PF01380 SIS domain AC028_14230 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AC028_14235 PF05275 Copper resistance protein B precursor (CopB) AC028_14240 PF07731 Multicopper oxidase AC028_14240 PF07732 Multicopper oxidase AC028_14240 PF00394 Multicopper oxidase AC028_14255 PF01432 Peptidase family M3 AC028_14270 PF07977 FabA-like domain AC028_14275 PF00817 impB/mucB/samB family AC028_14275 PF11799 impB/mucB/samB family C-terminal domain AC028_14280 PF13419 Haloacid dehalogenase-like hydrolase AC028_14285 PF07715 TonB-dependent Receptor Plug Domain AC028_14285 PF00593 TonB dependent receptor AC028_14290 PF00756 Putative esterase AC028_14300 PF13185 GAF domain AC028_14335 PF01242 6-pyruvoyl tetrahydropterin synthase AC028_14340 PF00593 TonB dependent receptor AC028_14340 PF07715 TonB-dependent Receptor Plug Domain AC028_14350 PF00270 DEAD/DEAH box helicase AC028_14350 PF00271 Helicase conserved C-terminal domain AC028_14360 PF02798 Glutathione S-transferase, N-terminal domain AC028_14360 PF14497 Glutathione S-transferase, C-terminal domain AC028_14365 PF00437 Type II/IV secretion system protein AC028_14385 PF00291 Pyridoxal-phosphate dependent enzyme AC028_14385 PF00571 CBS domain AC028_14390 PF01053 Cys/Met metabolism PLP-dependent enzyme AC028_14400 PF13439 Glycosyltransferase Family 4 AC028_14400 PF00534 Glycosyl transferases group 1 AC028_14410 PF00005 ABC transporter AC028_14415 PF00069 Protein kinase domain AC028_14415 PF13847 Methyltransferase domain AC028_14425 PF00534 Glycosyl transferases group 1 AC028_14425 PF13477 Glycosyl transferase 4-like AC028_14430 PF16363 GDP-mannose 4,6 dehydratase AC028_14435 PF16363 GDP-mannose 4,6 dehydratase AC028_14445 PF01527 Transposase AC028_14455 PF13683 Integrase core domain AC028_14455 PF13276 HTH-like domain AC028_14460 PF01527 Transposase AC028_14480 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_14480 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AC028_14485 PF01370 NAD dependent epimerase/dehydratase family AC028_14490 PF00106 short chain dehydrogenase AC028_14495 PF01565 FAD binding domain AC028_14495 PF04030 D-arabinono-1,4-lactone oxidase AC028_14500 PF01040 UbiA prenyltransferase family AC028_14510 PF00766 Electron transfer flavoprotein FAD-binding domain AC028_14510 PF01012 Electron transfer flavoprotein domain AC028_14515 PF01012 Electron transfer flavoprotein domain AC028_14520 PF16363 GDP-mannose 4,6 dehydratase AC028_14525 PF00483 Nucleotidyl transferase AC028_14530 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AC028_14535 PF04321 RmlD substrate binding domain AC028_14540 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AC028_14540 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AC028_14540 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AC028_14545 PF01050 Mannose-6-phosphate isomerase AC028_14545 PF00483 Nucleotidyl transferase AC028_14550 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AC028_14550 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AC028_14550 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AC028_14550 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AC028_14555 PF01144 Coenzyme A transferase AC028_14560 PF01144 Coenzyme A transferase AC028_14580 PF02470 MlaD protein AC028_14580 PF03886 ABC-type transport auxiliary lipoprotein component AC028_14585 PF00005 ABC transporter AC028_14590 PF02405 Permease MlaE AC028_14625 PF13732 Domain of unknown function (DUF4162) AC028_14625 PF00005 ABC transporter AC028_14630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AC028_14635 PF00324 Amino acid permease AC028_14640 PF02574 Homocysteine S-methyltransferase AC028_14650 PF02592 Putative vitamin uptake transporter AC028_14670 PF03551 Transcriptional regulator PadR-like family AC028_14705 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AC028_14710 PF14579 Helix-hairpin-helix motif AC028_14710 PF01336 OB-fold nucleic acid binding domain AC028_14710 PF07733 Bacterial DNA polymerase III alpha NTPase domain AC028_14710 PF02811 PHP domain AC028_14710 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AC028_14715 PF01351 Ribonuclease HII AC028_14720 PF02684 Lipid-A-disaccharide synthetase AC028_14725 PF00132 Bacterial transferase hexapeptide (six repeats) AC028_14725 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AC028_14730 PF07977 FabA-like domain AC028_14735 PF00132 Bacterial transferase hexapeptide (six repeats) AC028_14735 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AC028_14745 PF07244 Surface antigen variable number repeat AC028_14745 PF01103 Surface antigen AC028_14750 PF17820 PDZ domain AC028_14750 PF02163 Peptidase family M50 AC028_14755 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AC028_14755 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AC028_14755 PF13288 DXP reductoisomerase C-terminal domain AC028_14765 PF01255 Putative undecaprenyl diphosphate synthase AC028_14770 PF01765 Ribosome recycling factor AC028_14775 PF00696 Amino acid kinase family AC028_14780 PF00072 Response regulator receiver domain AC028_14780 PF00990 Diguanylate cyclase, GGDEF domain AC028_14785 PF00889 Elongation factor TS AC028_14790 PF00318 Ribosomal protein S2 AC028_14825 PF00557 Metallopeptidase family M24 AC028_14830 PF08335 GlnD PII-uridylyltransferase AC028_14830 PF01966 HD domain AC028_14830 PF01909 Nucleotidyltransferase domain AC028_14835 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AC028_14835 PF00132 Bacterial transferase hexapeptide (six repeats) AC028_14835 PF14602 Hexapeptide repeat of succinyl-transferase AC028_14840 PF03960 ArsC family AC028_14845 PF07687 Peptidase dimerisation domain AC028_14845 PF01546 Peptidase family M20/M25/M40 AC028_14850 PF00733 Asparagine synthase AC028_14850 PF13537 Glutamine amidotransferase domain AC028_14860 PF00593 TonB dependent receptor AC028_14860 PF07715 TonB-dependent Receptor Plug Domain AC028_14865 PF01804 Penicillin amidase AC028_14870 PF00210 Ferritin-like domain AC028_14875 PF05724 Thiopurine S-methyltransferase (TPMT) AC028_14880 PF00521 DNA gyrase/topoisomerase IV, subunit A AC028_14880 PF03989 DNA gyrase C-terminal domain, beta-propeller AC028_14895 PF02321 Outer membrane efflux protein AC028_14900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC028_14900 PF00529 HlyD membrane-fusion protein of T1SS AC028_14905 PF07690 Major Facilitator Superfamily AC028_14915 PF14310 Fibronectin type III-like domain AC028_14915 PF01915 Glycosyl hydrolase family 3 C-terminal domain AC028_14915 PF00933 Glycosyl hydrolase family 3 N terminal domain AC028_14950 PF12802 MarR family AC028_14955 PF01432 Peptidase family M3 AC028_14960 PF00255 Glutathione peroxidase AC028_14965 PF00970 Oxidoreductase FAD-binding domain AC028_14965 PF00175 Oxidoreductase NAD-binding domain AC028_14970 PF00005 ABC transporter AC028_14975 PF05681 Fumarate hydratase (Fumerase) AC028_14975 PF05683 Fumarase C-terminus AC028_14985 PF00484 Carbonic anhydrase AC028_14990 PF02253 Phospholipase A1 AC028_15000 PF00313 'Cold-shock' DNA-binding domain AC028_15015 PF00899 ThiF family AC028_15020 PF01026 TatD related DNase AC028_15035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_15035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15035 PF02770 Acyl-CoA dehydrogenase, middle domain AC028_15045 PF02798 Glutathione S-transferase, N-terminal domain AC028_15045 PF00043 Glutathione S-transferase, C-terminal domain AC028_15055 PF13537 Glutamine amidotransferase domain AC028_15055 PF00733 Asparagine synthase AC028_15060 PF03358 NADPH-dependent FMN reductase AC028_15065 PF00772 DnaB-like helicase N terminal domain AC028_15065 PF03796 DnaB-like helicase C terminal domain AC028_15070 PF03441 FAD binding domain of DNA photolyase AC028_15070 PF00875 DNA photolyase AC028_15075 PF05736 OprF membrane domain AC028_15075 PF00691 OmpA family AC028_15080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_15080 PF03466 LysR substrate binding domain AC028_15095 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC028_15100 PF00873 AcrB/AcrD/AcrF family AC028_15105 PF00106 short chain dehydrogenase AC028_15110 PF02321 Outer membrane efflux protein AC028_15115 PF00990 Diguanylate cyclase, GGDEF domain AC028_15115 PF08448 PAS fold AC028_15155 PF01695 IstB-like ATP binding protein AC028_15160 PF00665 Integrase core domain AC028_15190 PF01609 Transposase DDE domain AC028_15190 PF05598 Transposase domain (DUF772) AC028_15200 PF08281 Sigma-70, region 4 AC028_15200 PF04542 Sigma-70 region 2 AC028_15205 PF04773 FecR protein AC028_15205 PF16220 Domain of unknown function (DUF4880) AC028_15215 PF01527 Transposase AC028_15220 PF00665 Integrase core domain AC028_15220 PF13333 Integrase core domain AC028_15220 PF13276 HTH-like domain AC028_15230 PF00593 TonB dependent receptor AC028_15230 PF07715 TonB-dependent Receptor Plug Domain AC028_15245 PF01609 Transposase DDE domain AC028_15245 PF05598 Transposase domain (DUF772) AC028_15260 PF01609 Transposase DDE domain AC028_15260 PF05598 Transposase domain (DUF772) AC028_15270 PF03193 RsgA GTPase AC028_15285 PF00128 Alpha amylase, catalytic domain AC028_15300 PF00356 Bacterial regulatory proteins, lacI family AC028_15305 PF01609 Transposase DDE domain AC028_15305 PF05598 Transposase domain (DUF772) AC028_15310 PF00106 short chain dehydrogenase AC028_15315 PF03600 Citrate transporter AC028_15325 PF00486 Transcriptional regulatory protein, C terminal AC028_15325 PF00072 Response regulator receiver domain AC028_15330 PF00512 His Kinase A (phospho-acceptor) domain AC028_15330 PF08521 Two-component sensor kinase N-terminal AC028_15330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_15340 PF00072 Response regulator receiver domain AC028_15340 PF00196 Bacterial regulatory proteins, luxR family AC028_15355 PF00248 Aldo/keto reductase family AC028_15365 PF03466 LysR substrate binding domain AC028_15365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_15375 PF07690 Major Facilitator Superfamily AC028_15380 PF00512 His Kinase A (phospho-acceptor) domain AC028_15380 PF02743 Cache domain AC028_15380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_15390 PF00375 Sodium:dicarboxylate symporter family AC028_15395 PF00390 Malic enzyme, N-terminal domain AC028_15395 PF01515 Phosphate acetyl/butaryl transferase AC028_15395 PF03949 Malic enzyme, NAD binding domain AC028_15410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC028_15410 PF00529 HlyD membrane-fusion protein of T1SS AC028_15425 PF13683 Integrase core domain AC028_15425 PF13276 HTH-like domain AC028_15430 PF01527 Transposase AC028_15445 PF00082 Subtilase family AC028_15450 PF01668 SmpB protein AC028_15455 PF03364 Polyketide cyclase / dehydrase and lipid transport AC028_15460 PF03658 RnfH family Ubiquitin AC028_15465 PF04355 SmpA / OmlA family AC028_15470 PF01475 Ferric uptake regulator family AC028_15475 PF02463 RecF/RecN/SMC N terminal domain AC028_15480 PF01628 HrcA protein C terminal domain AC028_15480 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AC028_15485 PF01025 GrpE AC028_15490 PF00012 Hsp70 protein AC028_15495 PF01556 DnaJ C terminal domain AC028_15495 PF00226 DnaJ domain AC028_15495 PF00684 DnaJ central domain AC028_15500 PF08543 Phosphomethylpyrimidine kinase AC028_15525 PF00664 ABC transporter transmembrane region AC028_15525 PF03412 Peptidase C39 family AC028_15525 PF00005 ABC transporter AC028_15530 PF03466 LysR substrate binding domain AC028_15530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_15535 PF00664 ABC transporter transmembrane region AC028_15535 PF00005 ABC transporter AC028_15540 PF01205 Uncharacterized protein family UPF0029 AC028_15545 PF03641 Possible lysine decarboxylase AC028_15550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AC028_15550 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_15555 PF02817 e3 binding domain AC028_15555 PF00364 Biotin-requiring enzyme AC028_15555 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AC028_15560 PF02779 Transketolase, pyrimidine binding domain AC028_15560 PF16870 2-oxoglutarate dehydrogenase C-terminal AC028_15560 PF00676 Dehydrogenase E1 component AC028_15560 PF16078 2-oxoglutarate dehydrogenase N-terminus AC028_15570 PF08007 Cupin superfamily protein AC028_15575 PF01527 Transposase AC028_15580 PF13333 Integrase core domain AC028_15580 PF13276 HTH-like domain AC028_15580 PF00665 Integrase core domain AC028_15585 PF01527 Transposase AC028_15590 PF13333 Integrase core domain AC028_15590 PF00665 Integrase core domain AC028_15590 PF13276 HTH-like domain AC028_15600 PF08328 Adenylosuccinate lyase C-terminal AC028_15600 PF00206 Lyase AC028_15605 PF00571 CBS domain AC028_15605 PF01595 Cyclin M transmembrane N-terminal domain AC028_15605 PF03471 Transporter associated domain AC028_15610 PF00206 Lyase AC028_15610 PF10415 Fumarase C C-terminus AC028_15635 PF00005 ABC transporter AC028_15640 PF00392 Bacterial regulatory proteins, gntR family AC028_15645 PF00255 Glutathione peroxidase AC028_15650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AC028_15650 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AC028_15655 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AC028_15655 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AC028_15655 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AC028_15660 PF04102 SlyX AC028_15675 PF00356 Bacterial regulatory proteins, lacI family AC028_15680 PF07690 Major Facilitator Superfamily AC028_15685 PF00294 pfkB family carbohydrate kinase AC028_15695 PF02310 B12 binding domain AC028_15695 PF02607 B12 binding domain AC028_15695 PF02965 Vitamin B12 dependent methionine synthase, activation domain AC028_15695 PF00809 Pterin binding enzyme AC028_15695 PF02574 Homocysteine S-methyltransferase AC028_15700 PF02574 Homocysteine S-methyltransferase AC028_15700 PF00809 Pterin binding enzyme AC028_15705 PF01209 ubiE/COQ5 methyltransferase family AC028_15710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15710 PF02770 Acyl-CoA dehydrogenase, middle domain AC028_15710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_15715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_15715 PF02770 Acyl-CoA dehydrogenase, middle domain AC028_15715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15720 PF02770 Acyl-CoA dehydrogenase, middle domain AC028_15720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_15720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_15725 PF02770 Acyl-CoA dehydrogenase, middle domain AC028_15725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15730 PF02770 Acyl-CoA dehydrogenase, middle domain AC028_15730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_15730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15735 PF02770 Acyl-CoA dehydrogenase, middle domain AC028_15735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_15740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_15740 PF02770 Acyl-CoA dehydrogenase, middle domain AC028_15740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_15745 PF02770 Acyl-CoA dehydrogenase, middle domain AC028_15750 PF02770 Acyl-CoA dehydrogenase, middle domain AC028_15750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_15750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15765 PF00773 RNB domain AC028_15765 PF17876 Cold shock domain AC028_15765 PF08206 Ribonuclease B OB domain AC028_15765 PF08461 Ribonuclease R winged-helix domain AC028_15765 PF00575 S1 RNA binding domain AC028_15785 PF08032 RNA 2'-O ribose methyltransferase substrate binding AC028_15785 PF00588 SpoU rRNA Methylase family AC028_15790 PF00990 Diguanylate cyclase, GGDEF domain AC028_15790 PF07694 5TMR of 5TMR-LYT AC028_15795 PF00929 Exonuclease AC028_15805 PF01895 PhoU domain AC028_15810 PF00005 ABC transporter AC028_15815 PF00528 Binding-protein-dependent transport system inner membrane component AC028_15820 PF00528 Binding-protein-dependent transport system inner membrane component AC028_15825 PF12849 PBP superfamily domain AC028_15830 PF12849 PBP superfamily domain AC028_15845 PF00484 Carbonic anhydrase AC028_15850 PF01740 STAS domain AC028_15850 PF00916 Sulfate permease family AC028_15855 PF10576 Iron-sulfur binding domain of endonuclease III AC028_15855 PF00633 Helix-hairpin-helix motif AC028_15855 PF00730 HhH-GPD superfamily base excision DNA repair protein AC028_15865 PF00378 Enoyl-CoA hydratase/isomerase AC028_15870 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AC028_15870 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AC028_15875 PF00293 NUDIX domain AC028_15880 PF00581 Rhodanese-like domain AC028_15915 PF10672 S-adenosylmethionine-dependent methyltransferase AC028_15915 PF02926 THUMP domain AC028_15915 PF01170 Putative RNA methylase family UPF0020 AC028_15920 PF01513 ATP-NAD kinase AC028_15940 PF08411 Exonuclease C-terminal AC028_15940 PF00929 Exonuclease AC028_15945 PF01494 FAD binding domain AC028_15950 PF00266 Aminotransferase class-V AC028_15960 PF06052 3-hydroxyanthranilic acid dioxygenase AC028_15965 PF00484 Carbonic anhydrase AC028_16010 PF00072 Response regulator receiver domain AC028_16010 PF00196 Bacterial regulatory proteins, luxR family AC028_16050 PF00152 tRNA synthetases class II (D, K and N) AC028_16050 PF01336 OB-fold nucleic acid binding domain AC028_16055 PF01521 Iron-sulphur cluster biosynthesis AC028_16060 PF01250 Ribosomal protein S6 AC028_16065 PF01084 Ribosomal protein S18 AC028_16070 PF01281 Ribosomal protein L9, N-terminal domain AC028_16070 PF03948 Ribosomal protein L9, C-terminal domain AC028_16080 PF02463 RecF/RecN/SMC N terminal domain AC028_16085 PF04354 ZipA, C-terminal FtsZ-binding domain AC028_16100 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AC028_16100 PF03120 NAD-dependent DNA ligase OB-fold domain AC028_16100 PF12826 Helix-hairpin-helix motif AC028_16100 PF00533 BRCA1 C Terminus (BRCT) domain AC028_16100 PF01653 NAD-dependent DNA ligase adenylation domain AC028_16105 PF00152 tRNA synthetases class II (D, K and N) AC028_16115 PF01008 Initiation factor 2 subunit family AC028_16120 PF03989 DNA gyrase C-terminal domain, beta-propeller AC028_16120 PF00521 DNA gyrase/topoisomerase IV, subunit A AC028_16125 PF13360 PQQ-like domain AC028_16135 PF17391 Urocanase N-terminal domain AC028_16135 PF17392 Urocanase C-terminal domain AC028_16135 PF01175 Urocanase Rossmann-like domain AC028_16145 PF00221 Aromatic amino acid lyase AC028_16150 PF07969 Amidohydrolase family AC028_16165 PF07702 UTRA domain AC028_16165 PF00392 Bacterial regulatory proteins, gntR family AC028_16190 PF01794 Ferric reductase like transmembrane component AC028_16195 PF00174 Oxidoreductase molybdopterin binding domain AC028_16200 PF00266 Aminotransferase class-V AC028_16205 PF01817 Chorismate mutase type II AC028_16205 PF01842 ACT domain AC028_16205 PF00800 Prephenate dehydratase AC028_16210 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AC028_16220 PF03544 Gram-negative bacterial TonB protein C-terminal AC028_16225 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AC028_16225 PF02403 Seryl-tRNA synthetase N-terminal domain AC028_16230 PF02525 Flavodoxin-like fold AC028_16235 PF03466 LysR substrate binding domain AC028_16235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_16250 PF00672 HAMP domain AC028_16250 PF02203 Tar ligand binding domain homologue AC028_16250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_16275 PF08448 PAS fold AC028_16275 PF13188 PAS domain AC028_16275 PF00512 His Kinase A (phospho-acceptor) domain AC028_16275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_16275 PF00072 Response regulator receiver domain AC028_16280 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AC028_16280 PF00072 Response regulator receiver domain AC028_16280 PF01627 Hpt domain AC028_16280 PF00512 His Kinase A (phospho-acceptor) domain AC028_16280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_16280 PF00672 HAMP domain AC028_16285 PF06745 KaiC AC028_16290 PF00072 Response regulator receiver domain AC028_16290 PF13426 PAS domain AC028_16290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_16300 PF03918 Cytochrome C biogenesis protein AC028_16305 PF08534 Redoxin AC028_16310 PF01578 Cytochrome C assembly protein AC028_16310 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AC028_16315 PF03100 CcmE AC028_16320 PF04995 Heme exporter protein D (CcmD) AC028_16325 PF01578 Cytochrome C assembly protein AC028_16330 PF00082 Subtilase family AC028_16340 PF04542 Sigma-70 region 2 AC028_16340 PF08281 Sigma-70, region 4 AC028_16350 PF00034 Cytochrome c AC028_16365 PF05523 WxcM-like, C-terminal AC028_16385 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AC028_16390 PF01943 Polysaccharide biosynthesis protein AC028_16395 PF00535 Glycosyl transferase family 2 AC028_16410 PF08241 Methyltransferase domain AC028_16445 PF00005 ABC transporter AC028_16450 PF00005 ABC transporter AC028_16450 PF00664 ABC transporter transmembrane region AC028_16455 PF07690 Major Facilitator Superfamily AC028_16460 PF00296 Luciferase-like monooxygenase AC028_16475 PF01595 Cyclin M transmembrane N-terminal domain AC028_16475 PF00571 CBS domain AC028_16475 PF03471 Transporter associated domain AC028_16485 PF01384 Phosphate transporter family AC028_16500 PF00204 DNA gyrase B AC028_16500 PF00986 DNA gyrase B subunit, carboxyl terminus AC028_16500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_16500 PF01751 Toprim domain AC028_16510 PF06418 CTP synthase N-terminus AC028_16510 PF00117 Glutamine amidotransferase class-I AC028_16515 PF00793 DAHP synthetase I family AC028_16525 PF00113 Enolase, C-terminal TIM barrel domain AC028_16525 PF03952 Enolase, N-terminal domain AC028_16530 PF04977 Septum formation initiator AC028_16535 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AC028_16540 PF02542 YgbB family AC028_16545 PF01142 tRNA pseudouridine synthase D (TruD) AC028_16550 PF01713 Smr domain AC028_16555 PF01975 Survival protein SurE AC028_16565 PF09335 SNARE associated Golgi protein AC028_16570 PF01476 LysM domain AC028_16570 PF01551 Peptidase family M23 AC028_16575 PF04430 Protein of unknown function (DUF498/DUF598) AC028_16580 PF01985 CRS1 / YhbY (CRM) domain AC028_16585 PF01728 FtsJ-like methyltransferase AC028_16590 PF01434 Peptidase family M41 AC028_16590 PF00004 ATPase family associated with various cellular activities (AAA) AC028_16590 PF17862 AAA+ lid domain AC028_16590 PF06480 FtsH Extracellular AC028_16595 PF00809 Pterin binding enzyme AC028_16605 PF17209 Hfq protein AC028_16610 PF16360 GTP-binding GTPase Middle Region AC028_16610 PF13167 GTP-binding GTPase N-terminal AC028_16610 PF01926 50S ribosome-binding GTPase AC028_16615 PF02464 Competence-damaged protein AC028_16620 PF03109 ABC1 family AC028_16625 PF01726 LexA DNA binding domain AC028_16625 PF00717 Peptidase S24-like AC028_16630 PF00154 recA bacterial DNA recombination protein AC028_16635 PF02631 RecX family AC028_16640 PF02272 DHHA1 domain AC028_16640 PF01411 tRNA synthetases class II (A) AC028_16640 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AC028_16645 PF02599 Global regulator protein family AC028_16655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_16655 PF08447 PAS fold AC028_16655 PF13426 PAS domain AC028_16660 PF02678 Pirin AC028_16660 PF17954 Quercetinase C-terminal cupin domain AC028_16670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_16670 PF03466 LysR substrate binding domain AC028_16695 PF08543 Phosphomethylpyrimidine kinase AC028_16710 PF02562 PhoH-like protein AC028_16710 PF13638 PIN domain AC028_16715 PF00578 AhpC/TSA family AC028_16730 PF00701 Dihydrodipicolinate synthetase family AC028_16740 PF11953 Domain of unknown function (DUF3470) AC028_16740 PF00037 4Fe-4S binding domain AC028_16745 PF05035 2-keto-3-deoxy-galactonokinase AC028_16750 PF08450 SMP-30/Gluconolactonase/LRE-like region AC028_16755 PF13378 Enolase C-terminal domain-like AC028_16755 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AC028_16760 PF01081 KDPG and KHG aldolase AC028_16770 PF03466 LysR substrate binding domain AC028_16770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_16785 PF00942 Cellulose binding domain AC028_16785 PF03442 Carbohydrate binding domain X2 AC028_16795 PF02449 Beta-galactosidase AC028_16795 PF08532 Beta-galactosidase trimerisation domain AC028_16795 PF08533 Beta-galactosidase C-terminal domain AC028_16800 PF16338 Domain of unknown function (DUF4968) AC028_16800 PF17137 Domain of unknown function (DUF5110) AC028_16800 PF01055 Glycosyl hydrolases family 31 AC028_16810 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AC028_16810 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AC028_16820 PF00083 Sugar (and other) transporter AC028_16845 PF02649 Type I GTP cyclohydrolase folE2 AC028_16855 PF01743 Poly A polymerase head domain AC028_16855 PF12626 Polymerase A arginine-rich C-terminus AC028_16855 PF12627 Probable RNA and SrmB- binding site of polymerase A AC028_16860 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AC028_16865 PF02548 Ketopantoate hydroxymethyltransferase AC028_16870 PF02569 Pantoate-beta-alanine ligase AC028_16875 PF02261 Aspartate decarboxylase AC028_16880 PF00342 Phosphoglucose isomerase AC028_16900 PF01915 Glycosyl hydrolase family 3 C-terminal domain AC028_16900 PF00933 Glycosyl hydrolase family 3 N terminal domain AC028_16900 PF14310 Fibronectin type III-like domain AC028_16905 PF00474 Sodium:solute symporter family AC028_16910 PF00990 Diguanylate cyclase, GGDEF domain AC028_16910 PF00360 Phytochrome region AC028_16910 PF01590 GAF domain AC028_16910 PF00563 EAL domain AC028_16915 PF00150 Cellulase (glycosyl hydrolase family 5) AC028_16915 PF02013 Cellulose or protein binding domain AC028_16920 PF00072 Response regulator receiver domain AC028_16930 PF04551 GcpE protein AC028_16935 PF01569 PAP2 superfamily AC028_16940 PF07690 Major Facilitator Superfamily AC028_16945 PF01177 Asp/Glu/Hydantoin racemase AC028_16950 PF00892 EamA-like transporter family AC028_16955 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AC028_16955 PF01565 FAD binding domain AC028_16960 PF01180 Dihydroorotate dehydrogenase AC028_16975 PF00171 Aldehyde dehydrogenase family AC028_16985 PF01609 Transposase DDE domain AC028_16985 PF05598 Transposase domain (DUF772) AC028_16990 PF01527 Transposase AC028_16995 PF13276 HTH-like domain AC028_16995 PF13683 Integrase core domain AC028_17005 PF00742 Homoserine dehydrogenase AC028_17005 PF01842 ACT domain AC028_17005 PF00696 Amino acid kinase family AC028_17005 PF03447 Homoserine dehydrogenase, NAD binding domain AC028_17005 PF13840 ACT domain AC028_17010 PF08544 GHMP kinases C terminal AC028_17010 PF00288 GHMP kinases N terminal domain AC028_17020 PF14821 Threonine synthase N terminus AC028_17020 PF00291 Pyridoxal-phosphate dependent enzyme AC028_17030 PF13545 Crp-like helix-turn-helix domain AC028_17030 PF00027 Cyclic nucleotide-binding domain AC028_17035 PF13393 Histidyl-tRNA synthetase AC028_17035 PF03129 Anticodon binding domain AC028_17045 PF08029 HisG, C-terminal domain AC028_17045 PF01634 ATP phosphoribosyltransferase AC028_17050 PF00815 Histidinol dehydrogenase AC028_17055 PF00155 Aminotransferase class I and II AC028_17060 PF00475 Imidazoleglycerol-phosphate dehydratase AC028_17065 PF00117 Glutamine amidotransferase class-I AC028_17070 PF00977 Histidine biosynthesis protein AC028_17075 PF00977 Histidine biosynthesis protein AC028_17080 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AC028_17080 PF01502 Phosphoribosyl-AMP cyclohydrolase AC028_17105 PF03079 ARD/ARD' family AC028_17110 PF00596 Class II Aldolase and Adducin N-terminal domain AC028_17115 PF13520 Amino acid permease AC028_17120 PF13520 Amino acid permease AC028_17130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AC028_17130 PF01842 ACT domain AC028_17130 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AC028_17135 PF01565 FAD binding domain AC028_17135 PF02913 FAD linked oxidases, C-terminal domain AC028_17155 PF01132 Elongation factor P (EF-P) OB domain AC028_17155 PF08207 Elongation factor P (EF-P) KOW-like domain AC028_17155 PF09285 Elongation factor P, C-terminal AC028_17160 PF00106 short chain dehydrogenase AC028_17165 PF00682 HMGL-like AC028_17175 PF00378 Enoyl-CoA hydratase/isomerase AC028_17185 PF07670 Nucleoside recognition AC028_17185 PF02421 Ferrous iron transport protein B AC028_17185 PF07664 Ferrous iron transport protein B C terminus AC028_17200 PF00155 Aminotransferase class I and II AC028_17205 PF03473 MOSC domain AC028_17205 PF03475 3-alpha domain AC028_17210 PF05173 Dihydrodipicolinate reductase, C-terminus AC028_17210 PF01113 Dihydrodipicolinate reductase, N-terminus AC028_17215 PF00117 Glutamine amidotransferase class-I AC028_17215 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AC028_17225 PF02142 MGS-like domain AC028_17225 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AC028_17225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AC028_17230 PF01272 Transcription elongation factor, GreA/GreB, C-term AC028_17230 PF03449 Transcription elongation factor, N-terminal AC028_17240 PF01368 DHH family AC028_17240 PF17768 RecJ OB domain AC028_17240 PF02272 DHHA1 domain AC028_17250 PF00072 Response regulator receiver domain AC028_17250 PF04397 LytTr DNA-binding domain AC028_17255 PF03462 PCRF domain AC028_17255 PF00472 RF-1 domain AC028_17260 PF00152 tRNA synthetases class II (D, K and N) AC028_17260 PF01336 OB-fold nucleic acid binding domain AC028_17265 PF00072 Response regulator receiver domain AC028_17270 PF00072 Response regulator receiver domain AC028_17270 PF01627 Hpt domain AC028_17270 PF00512 His Kinase A (phospho-acceptor) domain AC028_17270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_17275 PF01627 Hpt domain AC028_17275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_17275 PF00072 Response regulator receiver domain AC028_17275 PF00512 His Kinase A (phospho-acceptor) domain AC028_17280 PF00378 Enoyl-CoA hydratase/isomerase AC028_17300 PF00694 Aconitase C-terminal domain AC028_17300 PF00330 Aconitase family (aconitate hydratase) AC028_17315 PF06434 Aconitate hydratase 2 N-terminus AC028_17315 PF00330 Aconitase family (aconitate hydratase) AC028_17315 PF11791 Aconitate B N-terminal domain AC028_17320 PF00561 alpha/beta hydrolase fold AC028_17325 PF00990 Diguanylate cyclase, GGDEF domain AC028_17325 PF03707 Bacterial signalling protein N terminal repeat AC028_17325 PF00563 EAL domain AC028_17330 PF00072 Response regulator receiver domain AC028_17330 PF01339 CheB methylesterase AC028_17335 PF03975 CheD chemotactic sensory transduction AC028_17340 PF03705 CheR methyltransferase, all-alpha domain AC028_17340 PF01739 CheR methyltransferase, SAM binding domain AC028_17345 PF02203 Tar ligand binding domain homologue AC028_17345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17345 PF00672 HAMP domain AC028_17355 PF01584 CheW-like domain AC028_17360 PF07238 PilZ domain AC028_17360 PF07317 Flagellar regulator YcgR AC028_17365 PF02203 Tar ligand binding domain homologue AC028_17365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17365 PF00672 HAMP domain AC028_17370 PF02203 Tar ligand binding domain homologue AC028_17370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17370 PF00672 HAMP domain AC028_17375 PF02203 Tar ligand binding domain homologue AC028_17375 PF00672 HAMP domain AC028_17375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17380 PF00672 HAMP domain AC028_17380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17380 PF02203 Tar ligand binding domain homologue AC028_17385 PF02203 Tar ligand binding domain homologue AC028_17385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17385 PF00672 HAMP domain AC028_17395 PF00672 HAMP domain AC028_17395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17395 PF02203 Tar ligand binding domain homologue AC028_17410 PF02203 Tar ligand binding domain homologue AC028_17410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17410 PF00672 HAMP domain AC028_17420 PF02203 Tar ligand binding domain homologue AC028_17420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17420 PF00672 HAMP domain AC028_17425 PF17200 Single Cache domain 2 AC028_17425 PF00672 HAMP domain AC028_17425 PF17200 Single Cache domain 2 AC028_17425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17425 PF00672 HAMP domain AC028_17425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17440 PF00672 HAMP domain AC028_17440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17440 PF02203 Tar ligand binding domain homologue AC028_17445 PF01584 CheW-like domain AC028_17445 PF09078 CheY binding AC028_17445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_17445 PF01627 Hpt domain AC028_17445 PF02895 Signal transducing histidine kinase, homodimeric domain AC028_17450 PF00072 Response regulator receiver domain AC028_17460 PF01584 CheW-like domain AC028_17465 PF13614 AAA domain AC028_17470 PF00691 OmpA family AC028_17470 PF13677 Membrane MotB of proton-channel complex MotA/MotB AC028_17475 PF01618 MotA/TolQ/ExbB proton channel family AC028_17500 PF01527 Transposase AC028_17505 PF13276 HTH-like domain AC028_17505 PF00665 Integrase core domain AC028_17505 PF13333 Integrase core domain AC028_17545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_17545 PF07194 P2 response regulator binding domain AC028_17545 PF02895 Signal transducing histidine kinase, homodimeric domain AC028_17545 PF01627 Hpt domain AC028_17545 PF01584 CheW-like domain AC028_17550 PF04344 Chemotaxis phosphatase, CheZ AC028_17555 PF00072 Response regulator receiver domain AC028_17560 PF04545 Sigma-70, region 4 AC028_17560 PF04539 Sigma-70 region 3 AC028_17560 PF04542 Sigma-70 region 2 AC028_17565 PF10609 NUBPL iron-transfer P-loop NTPase AC028_17570 PF00448 SRP54-type protein, GTPase domain AC028_17575 PF00771 FHIPEP family AC028_17580 PF01312 FlhB HrpN YscU SpaS Family AC028_17585 PF00563 EAL domain AC028_17585 PF03707 Bacterial signalling protein N terminal repeat AC028_17585 PF00990 Diguanylate cyclase, GGDEF domain AC028_17590 PF00990 Diguanylate cyclase, GGDEF domain AC028_17590 PF00563 EAL domain AC028_17590 PF03707 Bacterial signalling protein N terminal repeat AC028_17590 PF13188 PAS domain AC028_17605 PF01311 Bacterial export proteins, family 1 AC028_17610 PF01313 Bacterial export proteins, family 3 AC028_17620 PF00813 FliP family AC028_17625 PF04347 Flagellar biosynthesis protein, FliO AC028_17630 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AC028_17635 PF02154 Flagellar motor switch protein FliM AC028_17635 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AC028_17655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AC028_17655 PF18269 T3SS EscN ATPase C-terminal domain AC028_17665 PF14842 FliG N-terminal domain AC028_17665 PF14841 FliG middle domain AC028_17665 PF01706 FliG C-terminal domain AC028_17670 PF01514 Secretory protein of YscJ/FliF family AC028_17670 PF08345 Flagellar M-ring protein C-terminal AC028_17675 PF02049 Flagellar hook-basal body complex protein FliE AC028_17680 PF00534 Glycosyl transferases group 1 AC028_17680 PF00535 Glycosyl transferase family 2 AC028_17690 PF00665 Integrase core domain AC028_17690 PF13276 HTH-like domain AC028_17690 PF13333 Integrase core domain AC028_17695 PF01527 Transposase AC028_17735 PF05598 Transposase domain (DUF772) AC028_17735 PF01609 Transposase DDE domain AC028_17750 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AC028_17750 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AC028_17760 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AC028_17765 PF02954 Bacterial regulatory protein, Fis family AC028_17765 PF00072 Response regulator receiver domain AC028_17765 PF00158 Sigma-54 interaction domain AC028_17770 PF01339 CheB methylesterase AC028_17770 PF00072 Response regulator receiver domain AC028_17775 PF04963 Sigma-54 factor, core binding domain AC028_17775 PF00309 Sigma-54 factor, Activator interacting domain (AID) AC028_17775 PF04552 Sigma-54, DNA binding domain AC028_17780 PF00072 Response regulator receiver domain AC028_17780 PF00196 Bacterial regulatory proteins, luxR family AC028_17795 PF02561 Flagellar protein FliS AC028_17800 PF07196 Flagellin hook IN motif AC028_17800 PF07195 Flagellar hook-associated protein 2 C-terminus AC028_17800 PF02465 Flagellar hook-associated protein 2 N-terminus AC028_17805 PF00669 Bacterial flagellin N-terminal helical region AC028_17805 PF00700 Bacterial flagellin C-terminal helical region AC028_17810 PF00700 Bacterial flagellin C-terminal helical region AC028_17810 PF00669 Bacterial flagellin N-terminal helical region AC028_17815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AC028_17815 PF07196 Flagellin hook IN motif AC028_17820 PF10135 Rod binding protein AC028_17820 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AC028_17825 PF02119 Flagellar P-ring protein AC028_17830 PF02107 Flagellar L-ring protein AC028_17835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AC028_17835 PF00460 Flagella basal body rod protein AC028_17840 PF00460 Flagella basal body rod protein AC028_17840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AC028_17845 PF07559 Flagellar basal body protein FlaE AC028_17845 PF00460 Flagella basal body rod protein AC028_17845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AC028_17850 PF03963 Flagellar hook capping protein - N-terminal region AC028_17855 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AC028_17855 PF00460 Flagella basal body rod protein AC028_17865 PF01584 CheW-like domain AC028_17865 PF00072 Response regulator receiver domain AC028_17885 PF00989 PAS fold AC028_17885 PF00512 His Kinase A (phospho-acceptor) domain AC028_17885 PF13426 PAS domain AC028_17885 PF13188 PAS domain AC028_17885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_17890 PF00563 EAL domain AC028_17890 PF03707 Bacterial signalling protein N terminal repeat AC028_17890 PF00990 Diguanylate cyclase, GGDEF domain AC028_17895 PF07730 Histidine kinase AC028_17895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_17900 PF03707 Bacterial signalling protein N terminal repeat AC028_17900 PF00990 Diguanylate cyclase, GGDEF domain AC028_17900 PF00563 EAL domain AC028_17910 PF12729 Four helix bundle sensory module for signal transduction AC028_17910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17910 PF00672 HAMP domain AC028_17915 PF04356 Protein of unknown function (DUF489) AC028_17925 PF00293 NUDIX domain AC028_17930 PF02617 ATP-dependent Clp protease adaptor protein ClpS AC028_17935 PF02861 Clp amino terminal domain, pathogenicity island component AC028_17935 PF10431 C-terminal, D2-small domain, of ClpB protein AC028_17935 PF00004 ATPase family associated with various cellular activities (AAA) AC028_17935 PF07724 AAA domain (Cdc48 subfamily) AC028_17935 PF17871 AAA lid domain AC028_17940 PF01176 Translation initiation factor 1A / IF-1 AC028_17945 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AC028_17955 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_17960 PF01580 FtsK/SpoIIIE family AC028_17960 PF09397 Ftsk gamma domain AC028_17960 PF17854 FtsK alpha domain AC028_17960 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AC028_17970 PF03548 Outer membrane lipoprotein carrier protein LolA AC028_17980 PF00004 ATPase family associated with various cellular activities (AAA) AC028_17980 PF16193 AAA C-terminal domain AC028_17980 PF12002 MgsA AAA+ ATPase C terminal AC028_17985 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AC028_17990 PF00108 Thiolase, N-terminal domain AC028_17990 PF02803 Thiolase, C-terminal domain AC028_17995 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AC028_17995 PF00378 Enoyl-CoA hydratase/isomerase AC028_17995 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AC028_18005 PF00334 Nucleoside diphosphate kinase AC028_18010 PF04055 Radical SAM superfamily AC028_18020 PF13464 Domain of unknown function (DUF4115) AC028_18030 PF01011 PQQ enzyme repeat AC028_18030 PF13360 PQQ-like domain AC028_18035 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AC028_18035 PF01926 50S ribosome-binding GTPase AC028_18040 PF00994 Probable molybdopterin binding domain AC028_18040 PF03454 MoeA C-terminal region (domain IV) AC028_18040 PF03453 MoeA N-terminal region (domain I and II) AC028_18045 PF00899 ThiF family AC028_18070 PF13823 Alcohol dehydrogenase GroES-associated AC028_18070 PF00107 Zinc-binding dehydrogenase AC028_18070 PF08240 Alcohol dehydrogenase GroES-like domain AC028_18080 PF03372 Endonuclease/Exonuclease/phosphatase family AC028_18090 PF03453 MoeA N-terminal region (domain I and II) AC028_18090 PF00994 Probable molybdopterin binding domain AC028_18090 PF03454 MoeA C-terminal region (domain IV) AC028_18095 PF12804 MobA-like NTP transferase domain AC028_18120 PF00561 alpha/beta hydrolase fold AC028_18125 PF01566 Natural resistance-associated macrophage protein AC028_18130 PF01325 Iron dependent repressor, N-terminal DNA binding domain AC028_18130 PF02742 Iron dependent repressor, metal binding and dimerisation domain AC028_18135 PF14437 MafB19-like deaminase AC028_18140 PF00929 Exonuclease AC028_18145 PF05552 Conserved TM helix AC028_18145 PF00924 Mechanosensitive ion channel AC028_18150 PF02896 PEP-utilising enzyme, TIM barrel domain AC028_18150 PF00391 PEP-utilising enzyme, mobile domain AC028_18150 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AC028_18155 PF03618 Kinase/pyrophosphorylase AC028_18175 PF01066 CDP-alcohol phosphatidyltransferase AC028_18185 PF00561 alpha/beta hydrolase fold AC028_18200 PF01266 FAD dependent oxidoreductase AC028_18200 PF00355 Rieske [2Fe-2S] domain AC028_18210 PF16921 Tex protein YqgF-like domain AC028_18210 PF09371 Tex-like protein N-terminal domain AC028_18210 PF00575 S1 RNA binding domain AC028_18210 PF17674 HHH domain AC028_18260 PF00034 Cytochrome c AC028_18270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC028_18275 PF00873 AcrB/AcrD/AcrF family AC028_18280 PF00873 AcrB/AcrD/AcrF family AC028_18285 PF01081 KDPG and KHG aldolase AC028_18290 PF00920 Dehydratase family AC028_18295 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AC028_18300 PF02685 Glucokinase AC028_18305 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AC028_18305 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AC028_18310 PF00005 ABC transporter AC028_18310 PF17912 MalK OB fold domain AC028_18315 PF01571 Aminomethyltransferase folate-binding domain AC028_18320 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AC028_18325 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AC028_18330 PF02910 Fumarate reductase flavoprotein C-term AC028_18330 PF00890 FAD binding domain AC028_18340 PF13085 2Fe-2S iron-sulfur cluster binding domain AC028_18345 PF03937 Flavinator of succinate dehydrogenase AC028_18355 PF02687 FtsX-like permease family AC028_18355 PF12704 MacB-like periplasmic core domain AC028_18360 PF00005 ABC transporter AC028_18370 PF00753 Metallo-beta-lactamase superfamily AC028_18370 PF03772 Competence protein AC028_18375 PF01618 MotA/TolQ/ExbB proton channel family AC028_18380 PF02472 Biopolymer transport protein ExbD/TolR AC028_18385 PF00005 ABC transporter AC028_18385 PF00664 ABC transporter transmembrane region AC028_18390 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AC028_18395 PF02348 Cytidylyltransferase AC028_18400 PF01451 Low molecular weight phosphotyrosine protein phosphatase AC028_18410 PF01527 Transposase AC028_18415 PF13333 Integrase core domain AC028_18415 PF00665 Integrase core domain AC028_18415 PF13276 HTH-like domain AC028_18425 PF08459 UvrC Helix-hairpin-helix N-terminal AC028_18425 PF01541 GIY-YIG catalytic domain AC028_18425 PF02151 UvrB/uvrC motif AC028_18430 PF01066 CDP-alcohol phosphatidyltransferase AC028_18455 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AC028_18455 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AC028_18455 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AC028_18465 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AC028_18480 PF00072 Response regulator receiver domain AC028_18480 PF00196 Bacterial regulatory proteins, luxR family AC028_18490 PF01479 S4 domain AC028_18490 PF00849 RNA pseudouridylate synthase AC028_18495 PF11737 Protein of unknown function (DUF3300) AC028_18500 PF02535 ZIP Zinc transporter AC028_18510 PF01329 Pterin 4 alpha carbinolamine dehydratase AC028_18515 PF01106 NifU-like domain AC028_18535 PF13406 Transglycosylase SLT domain AC028_18540 PF13700 Domain of unknown function (DUF4158) AC028_18540 PF01526 Tn3 transposase DDE domain AC028_18565 PF01494 FAD binding domain AC028_18570 PF13426 PAS domain AC028_18570 PF07536 HWE histidine kinase AC028_18570 PF13581 Histidine kinase-like ATPase domain AC028_18585 PF05598 Transposase domain (DUF772) AC028_18585 PF01609 Transposase DDE domain AC028_18605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_18605 PF03466 LysR substrate binding domain AC028_18615 PF01527 Transposase AC028_18640 PF00106 short chain dehydrogenase AC028_18645 PF00732 GMC oxidoreductase AC028_18645 PF05199 GMC oxidoreductase AC028_18650 PF12697 Alpha/beta hydrolase family AC028_18650 PF08241 Methyltransferase domain AC028_18690 PF08447 PAS fold AC028_18690 PF00990 Diguanylate cyclase, GGDEF domain AC028_18690 PF00563 EAL domain AC028_18690 PF08448 PAS fold AC028_18710 PF05974 Domain of unknown function (DUF892) AC028_18725 PF10414 Sirohaem synthase dimerisation region AC028_18725 PF14824 Sirohaem biosynthesis protein central AC028_18725 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AC028_18740 PF05977 Transmembrane secretion effector AC028_18745 PF07969 Amidohydrolase family AC028_18755 PF00857 Isochorismatase family AC028_18760 PF12833 Helix-turn-helix domain AC028_18795 PF03466 LysR substrate binding domain AC028_18795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_18800 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AC028_18800 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AC028_18800 PF00361 Proton-conducting membrane transporter AC028_18805 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) AC028_18825 PF13333 Integrase core domain AC028_18825 PF00665 Integrase core domain AC028_18825 PF13276 HTH-like domain AC028_18830 PF01527 Transposase AC028_18860 PF00589 Phage integrase family AC028_18860 PF13356 Arm DNA-binding domain AC028_18865 PF02540 NAD synthase AC028_18865 PF00958 GMP synthase C terminal domain AC028_18865 PF00117 Glutamine amidotransferase class-I AC028_18870 PF00478 IMP dehydrogenase / GMP reductase domain AC028_18870 PF00571 CBS domain AC028_18875 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AC028_18875 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AC028_18885 PF00999 Sodium/hydrogen exchanger family AC028_18885 PF02254 TrkA-N domain AC028_18890 PF00483 Nucleotidyl transferase AC028_18895 PF02719 Polysaccharide biosynthesis protein AC028_18900 PF00953 Glycosyl transferase family 4 AC028_18905 PF18073 Rubredoxin metal binding domain AC028_18915 PF00216 Bacterial DNA-binding protein AC028_18920 PF00575 S1 RNA binding domain AC028_18925 PF02224 Cytidylate kinase AC028_18930 PF00444 Ribosomal protein L36 AC028_18940 PF04371 Porphyromonas-type peptidyl-arginine deiminase AC028_18945 PF00795 Carbon-nitrogen hydrolase AC028_18970 PF00528 Binding-protein-dependent transport system inner membrane component AC028_18975 PF00528 Binding-protein-dependent transport system inner membrane component AC028_18995 PF00356 Bacterial regulatory proteins, lacI family AC028_19005 PF03795 YCII-related domain AC028_19010 PF02616 Segregation and condensation protein ScpA AC028_19015 PF04079 Segregation and condensation complex subunit ScpB AC028_19020 PF00849 RNA pseudouridylate synthase AC028_19020 PF01479 S4 domain AC028_19035 PF00795 Carbon-nitrogen hydrolase AC028_19040 PF00155 Aminotransferase class I and II AC028_19045 PF00005 ABC transporter AC028_19050 PF03379 CcmB protein AC028_19055 PF01578 Cytochrome C assembly protein AC028_19065 PF03100 CcmE AC028_19070 PF01578 Cytochrome C assembly protein AC028_19070 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AC028_19075 PF08534 Redoxin AC028_19080 PF03918 Cytochrome C biogenesis protein AC028_19090 PF00561 alpha/beta hydrolase fold AC028_19095 PF00313 'Cold-shock' DNA-binding domain AC028_19100 PF00005 ABC transporter AC028_19100 PF00664 ABC transporter transmembrane region AC028_19105 PF00005 ABC transporter AC028_19105 PF00664 ABC transporter transmembrane region AC028_19110 PF01654 Cytochrome bd terminal oxidase subunit I AC028_19115 PF02322 Cytochrome bd terminal oxidase subunit II AC028_19145 PF01381 Helix-turn-helix AC028_19150 PF00004 ATPase family associated with various cellular activities (AAA) AC028_19235 PF00589 Phage integrase family AC028_19245 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AC028_19245 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AC028_19255 PF00171 Aldehyde dehydrogenase family AC028_19260 PF01472 PUA domain AC028_19260 PF00696 Amino acid kinase family AC028_19270 PF00206 Lyase AC028_19275 PF01118 Semialdehyde dehydrogenase, NAD binding domain AC028_19285 PF00696 Amino acid kinase family AC028_19285 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase AC028_19300 PF00764 Arginosuccinate synthase AC028_19305 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AC028_19305 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AC028_19315 PF01406 tRNA synthetases class I (C) catalytic domain AC028_19315 PF09190 DALR domain AC028_19320 PF02657 Fe-S metabolism associated domain AC028_19330 PF01258 Prokaryotic dksA/traR C4-type zinc finger AC028_19340 PF01809 Putative membrane protein insertion efficiency factor AC028_19345 PF01979 Amidohydrolase family AC028_19350 PF01551 Peptidase family M23 AC028_19350 PF08460 Bacterial SH3 domain AC028_19360 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AC028_19365 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AC028_19375 PF00753 Metallo-beta-lactamase superfamily AC028_19395 PF00295 Glycosyl hydrolases family 28 AC028_19405 PF13419 Haloacid dehalogenase-like hydrolase AC028_19420 PF01979 Amidohydrolase family AC028_19430 PF01132 Elongation factor P (EF-P) OB domain AC028_19430 PF08207 Elongation factor P (EF-P) KOW-like domain AC028_19430 PF09285 Elongation factor P, C-terminal AC028_19435 PF04055 Radical SAM superfamily AC028_19440 PF00563 EAL domain AC028_19440 PF00990 Diguanylate cyclase, GGDEF domain AC028_19440 PF03707 Bacterial signalling protein N terminal repeat AC028_19440 PF13188 PAS domain AC028_19450 PF00588 SpoU rRNA Methylase family AC028_19455 PF00459 Inositol monophosphatase family AC028_19460 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AC028_19460 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AC028_19465 PF00545 ribonuclease AC028_19480 PF00271 Helicase conserved C-terminal domain AC028_19480 PF03880 DbpA RNA binding domain AC028_19480 PF00270 DEAD/DEAH box helicase AC028_19485 PF00156 Phosphoribosyl transferase domain AC028_19490 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AC028_19495 PF07859 alpha/beta hydrolase fold AC028_19500 PF02798 Glutathione S-transferase, N-terminal domain AC028_19500 PF14497 Glutathione S-transferase, C-terminal domain AC028_19505 PF00313 'Cold-shock' DNA-binding domain AC028_19510 PF07152 YaeQ protein AC028_19520 PF00990 Diguanylate cyclase, GGDEF domain AC028_19520 PF00563 EAL domain AC028_19520 PF00072 Response regulator receiver domain AC028_19525 PF01435 Peptidase family M48 AC028_19530 PF00749 tRNA synthetases class I (E and Q), catalytic domain AC028_19535 PF00106 short chain dehydrogenase AC028_19540 PF07879 PHB/PHA accumulation regulator DNA-binding domain AC028_19540 PF05233 PHB accumulation regulatory domain AC028_19560 PF01520 N-acetylmuramoyl-L-alanine amidase AC028_19560 PF11741 AMIN domain AC028_19565 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AC028_19570 PF01256 Carbohydrate kinase AC028_19570 PF03853 YjeF-related protein N-terminus AC028_19575 PF08331 Domain of unknown function (DUF1730) AC028_19580 PF02601 Exonuclease VII, large subunit AC028_19580 PF13742 OB-fold nucleic acid binding domain AC028_19590 PF03781 Sulfatase-modifying factor enzyme 1 AC028_19595 PF01612 3'-5' exonuclease AC028_19595 PF00570 HRDC domain AC028_19600 PF01068 ATP dependent DNA ligase domain AC028_19600 PF04679 ATP dependent DNA ligase C terminal region AC028_19600 PF13298 DNA polymerase Ligase (LigD) AC028_19630 PF01584 CheW-like domain AC028_19635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_19635 PF02743 Cache domain AC028_19635 PF00672 HAMP domain AC028_19640 PF02245 Methylpurine-DNA glycosylase (MPG) AC028_19645 PF08494 DEAD/H associated AC028_19645 PF00270 DEAD/DEAH box helicase AC028_19645 PF00271 Helicase conserved C-terminal domain AC028_19660 PF04386 Stringent starvation protein B AC028_19665 PF02798 Glutathione S-transferase, N-terminal domain AC028_19665 PF00043 Glutathione S-transferase, C-terminal domain AC028_19670 PF02167 Cytochrome C1 family AC028_19675 PF00033 Cytochrome b/b6/petB AC028_19675 PF00032 Cytochrome b(C-terminal)/b6/petD AC028_19680 PF00355 Rieske [2Fe-2S] domain AC028_19680 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AC028_19685 PF01464 Transglycosylase SLT domain AC028_19700 PF04055 Radical SAM superfamily AC028_19700 PF00919 Uncharacterized protein family UPF0004 AC028_19700 PF01938 TRAM domain AC028_19705 PF02562 PhoH-like protein AC028_19715 PF02130 Uncharacterized protein family UPF0054 AC028_19725 PF03471 Transporter associated domain AC028_19725 PF00571 CBS domain AC028_19740 PF00171 Aldehyde dehydrogenase family AC028_19750 PF00528 Binding-protein-dependent transport system inner membrane component AC028_19755 PF00528 Binding-protein-dependent transport system inner membrane component AC028_19760 PF08402 TOBE domain AC028_19760 PF00005 ABC transporter AC028_19765 PF02321 Outer membrane efflux protein AC028_19770 PF07690 Major Facilitator Superfamily AC028_19775 PF13533 Biotin-lipoyl like AC028_19780 PF13416 Bacterial extracellular solute-binding protein AC028_19785 PF00202 Aminotransferase class-III AC028_19790 PF00120 Glutamine synthetase, catalytic domain AC028_19795 PF07722 Peptidase C26 AC028_19800 PF00120 Glutamine synthetase, catalytic domain AC028_19805 PF01266 FAD dependent oxidoreductase AC028_19810 PF00072 Response regulator receiver domain AC028_19810 PF00990 Diguanylate cyclase, GGDEF domain AC028_19815 PF01814 Hemerythrin HHE cation binding domain AC028_19820 PF07690 Major Facilitator Superfamily AC028_19820 PF00083 Sugar (and other) transporter AC028_19835 PF00384 Molybdopterin oxidoreductase AC028_19840 PF02634 FdhD/NarQ family AC028_19845 PF07690 Major Facilitator Superfamily AC028_19860 PF04286 Protein of unknown function (DUF445) AC028_19865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_19865 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AC028_19865 PF00512 His Kinase A (phospho-acceptor) domain AC028_19865 PF00072 Response regulator receiver domain AC028_19865 PF01627 Hpt domain AC028_19865 PF00672 HAMP domain AC028_19870 PF00072 Response regulator receiver domain AC028_19875 PF07690 Major Facilitator Superfamily AC028_19905 PF05088 Bacterial NAD-glutamate dehydrogenase AC028_19915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC028_19915 PF00529 HlyD membrane-fusion protein of T1SS AC028_19920 PF00873 AcrB/AcrD/AcrF family AC028_19925 PF00356 Bacterial regulatory proteins, lacI family AC028_19930 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AC028_19930 PF02896 PEP-utilising enzyme, TIM barrel domain AC028_19930 PF00391 PEP-utilising enzyme, mobile domain AC028_19930 PF05524 PEP-utilising enzyme, N-terminal AC028_19930 PF00381 PTS HPr component phosphorylation site AC028_19935 PF00294 pfkB family carbohydrate kinase AC028_19940 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AC028_19945 PF13276 HTH-like domain AC028_19945 PF13683 Integrase core domain AC028_19950 PF01527 Transposase AC028_19965 PF02355 Protein export membrane protein AC028_19965 PF07549 SecD/SecF GG Motif AC028_19970 PF02355 Protein export membrane protein AC028_19970 PF07549 SecD/SecF GG Motif AC028_19970 PF13721 SecD export protein N-terminal TM region AC028_19975 PF02699 Preprotein translocase subunit AC028_19980 PF01702 Queuine tRNA-ribosyltransferase AC028_19985 PF02547 Queuosine biosynthesis protein AC028_20030 PF13276 HTH-like domain AC028_20030 PF00665 Integrase core domain AC028_20030 PF13333 Integrase core domain AC028_20035 PF01527 Transposase AC028_20040 PF02927 Cellulase N-terminal ig-like domain AC028_20040 PF00759 Glycosyl hydrolase family 9 AC028_20055 PF00037 4Fe-4S binding domain AC028_20070 PF01467 Cytidylyltransferase-like AC028_20080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_20080 PF00183 Hsp90 protein AC028_20095 PF01527 Transposase AC028_20100 PF13276 HTH-like domain AC028_20100 PF00665 Integrase core domain AC028_20100 PF13333 Integrase core domain AC028_20110 PF01609 Transposase DDE domain AC028_20110 PF05598 Transposase domain (DUF772) AC028_20125 PF07715 TonB-dependent Receptor Plug Domain AC028_20125 PF00593 TonB dependent receptor AC028_20135 PF04616 Glycosyl hydrolases family 43 AC028_20140 PF07532 Bacterial Ig-like domain (group 4) AC028_20145 PF07715 TonB-dependent Receptor Plug Domain AC028_20145 PF00593 TonB dependent receptor AC028_20155 PF09286 Pro-kumamolisin, activation domain AC028_20155 PF00082 Subtilase family AC028_20180 PF13520 Amino acid permease AC028_20195 PF00557 Metallopeptidase family M24 AC028_20195 PF01321 Creatinase/Prolidase N-terminal domain AC028_20200 PF00171 Aldehyde dehydrogenase family AC028_20205 PF00701 Dihydrodipicolinate synthetase family AC028_20210 PF04324 BFD-like [2Fe-2S] binding domain AC028_20210 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_20220 PF01266 FAD dependent oxidoreductase AC028_20225 PF05544 Proline racemase AC028_20235 PF02881 SRP54-type protein, helical bundle domain AC028_20235 PF00448 SRP54-type protein, GTPase domain AC028_20240 PF00633 Helix-hairpin-helix motif AC028_20240 PF10576 Iron-sulfur binding domain of endonuclease III AC028_20240 PF14815 NUDIX domain AC028_20240 PF00730 HhH-GPD superfamily base excision DNA repair protein AC028_20245 PF04362 Bacterial Fe(2+) trafficking AC028_20250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_20250 PF00072 Response regulator receiver domain AC028_20250 PF13426 PAS domain AC028_20280 PF08212 Lipocalin-like domain AC028_20290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_20290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_20290 PF12806 Acetyl-CoA dehydrogenase C-terminal like AC028_20290 PF02770 Acyl-CoA dehydrogenase, middle domain AC028_20300 PF02779 Transketolase, pyrimidine binding domain AC028_20300 PF02780 Transketolase, C-terminal domain AC028_20300 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AC028_20320 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AC028_20325 PF16123 Hydroxyacylglutathione hydrolase C-terminus AC028_20325 PF00753 Metallo-beta-lactamase superfamily AC028_20330 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AC028_20330 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AC028_20345 PF03808 Glycosyl transferase WecB/TagA/CpsF family AC028_20360 PF14667 Polysaccharide biosynthesis C-terminal domain AC028_20370 PF13439 Glycosyltransferase Family 4 AC028_20370 PF00534 Glycosyl transferases group 1 AC028_20390 PF02397 Bacterial sugar transferase AC028_20410 PF13411 MerR HTH family regulatory protein AC028_20415 PF00216 Bacterial DNA-binding protein AC028_20420 PF03483 B3/4 domain AC028_20420 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AC028_20420 PF03484 tRNA synthetase B5 domain AC028_20420 PF03147 Ferredoxin-fold anticodon binding domain AC028_20420 PF01588 Putative tRNA binding domain AC028_20425 PF01409 tRNA synthetases class II core domain (F) AC028_20425 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AC028_20430 PF00453 Ribosomal protein L20 AC028_20435 PF01632 Ribosomal protein L35 AC028_20440 PF05198 Translation initiation factor IF-3, N-terminal domain AC028_20440 PF00707 Translation initiation factor IF-3, C-terminal domain AC028_20445 PF02824 TGS domain AC028_20445 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AC028_20445 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AC028_20445 PF03129 Anticodon binding domain AC028_20450 PF00356 Bacterial regulatory proteins, lacI family AC028_20480 PF01527 Transposase AC028_20485 PF00665 Integrase core domain AC028_20485 PF13333 Integrase core domain AC028_20485 PF13276 HTH-like domain AC028_20490 PF02534 Type IV secretory system Conjugative DNA transfer AC028_20505 PF17757 UvrB interaction domain AC028_20505 PF12344 Ultra-violet resistance protein B AC028_20505 PF02151 UvrB/uvrC motif AC028_20505 PF04851 Type III restriction enzyme, res subunit AC028_20505 PF00271 Helicase conserved C-terminal domain AC028_20510 PF07963 Prokaryotic N-terminal methylation motif AC028_20510 PF00114 Pilin (bacterial filament) AC028_20515 PF01609 Transposase DDE domain AC028_20515 PF05598 Transposase domain (DUF772) AC028_20520 PF13276 HTH-like domain AC028_20520 PF13683 Integrase core domain AC028_20525 PF01527 Transposase AC028_20540 PF05567 Neisseria PilC beta-propeller domain AC028_20560 PF07963 Prokaryotic N-terminal methylation motif AC028_20565 PF11892 Domain of unknown function (DUF3412) AC028_20565 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AC028_20565 PF03641 Possible lysine decarboxylase AC028_20570 PF00593 TonB dependent receptor AC028_20575 PF01914 MarC family integral membrane protein AC028_20585 PF00462 Glutaredoxin AC028_20590 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AC028_20590 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AC028_20595 PF02222 ATP-grasp domain AC028_20595 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AC028_20600 PF00731 AIR carboxylase AC028_20610 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AC028_20610 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AC028_20620 PF00575 S1 RNA binding domain AC028_20620 PF00013 KH domain AC028_20620 PF03725 3' exoribonuclease family, domain 2 AC028_20620 PF01138 3' exoribonuclease family, domain 1 AC028_20620 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AC028_20625 PF00312 Ribosomal protein S15 AC028_20630 PF16198 tRNA pseudouridylate synthase B C-terminal domain AC028_20630 PF01509 TruB family pseudouridylate synthase (N terminal domain) AC028_20630 PF09157 Pseudouridine synthase II TruB, C-terminal AC028_20635 PF02033 Ribosome-binding factor A AC028_20640 PF08364 Bacterial translation initiation factor IF-2 associated region AC028_20640 PF11987 Translation-initiation factor 2 AC028_20640 PF00009 Elongation factor Tu GTP binding domain AC028_20640 PF04760 Translation initiation factor IF-2, N-terminal region AC028_20645 PF00575 S1 RNA binding domain AC028_20645 PF08529 NusA N-terminal domain AC028_20645 PF13184 NusA-like KH domain AC028_20650 PF02576 RimP N-terminal domain AC028_20650 PF17384 RimP C-terminal SH3 domain AC028_20660 PF00361 Proton-conducting membrane transporter AC028_20665 PF00361 Proton-conducting membrane transporter AC028_20665 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AC028_20670 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AC028_20670 PF00361 Proton-conducting membrane transporter AC028_20675 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AC028_20680 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AC028_20685 PF12838 4Fe-4S dicluster domain AC028_20690 PF00146 NADH dehydrogenase AC028_20695 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AC028_20695 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AC028_20695 PF00384 Molybdopterin oxidoreductase AC028_20700 PF10531 SLBB domain AC028_20700 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AC028_20700 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AC028_20710 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AC028_20715 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AC028_20720 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AC028_20725 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AC028_20740 PF00121 Triosephosphate isomerase AC028_20745 PF00106 short chain dehydrogenase AC028_20750 PF05598 Transposase domain (DUF772) AC028_20750 PF01609 Transposase DDE domain AC028_20765 PF00563 EAL domain AC028_20765 PF00990 Diguanylate cyclase, GGDEF domain AC028_20765 PF03707 Bacterial signalling protein N terminal repeat AC028_20785 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AC028_20785 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AC028_20785 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AC028_20785 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AC028_20790 PF01039 Carboxyl transferase domain AC028_20790 PF17848 Acetyl-coA carboxylase zinc finger domain AC028_20795 PF00290 Tryptophan synthase alpha chain AC028_20805 PF00291 Pyridoxal-phosphate dependent enzyme AC028_20810 PF03466 LysR substrate binding domain AC028_20810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_20815 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AC028_20820 PF01416 tRNA pseudouridine synthase AC028_20840 PF01118 Semialdehyde dehydrogenase, NAD binding domain AC028_20840 PF02774 Semialdehyde dehydrogenase, dimerisation domain AC028_20845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AC028_20845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AC028_20850 PF01264 Chorismate synthase AC028_20855 PF05175 Methyltransferase small domain AC028_20860 PF02630 SCO1/SenC AC028_20865 PF02666 Phosphatidylserine decarboxylase AC028_20875 PF05872 Bacterial protein of unknown function (DUF853) AC028_20880 PF00293 NUDIX domain AC028_20895 PF03449 Transcription elongation factor, N-terminal AC028_20895 PF01272 Transcription elongation factor, GreA/GreB, C-term AC028_20900 PF04055 Radical SAM superfamily AC028_20900 PF18693 TRAM domain AC028_20900 PF00919 Uncharacterized protein family UPF0004 AC028_20905 PF01738 Dienelactone hydrolase family AC028_20925 PF00692 dUTPase AC028_20930 PF10609 NUBPL iron-transfer P-loop NTPase AC028_20935 PF07715 TonB-dependent Receptor Plug Domain AC028_20935 PF00593 TonB dependent receptor AC028_20950 PF05649 Peptidase family M13 AC028_20950 PF01431 Peptidase family M13 AC028_20955 PF01431 Peptidase family M13 AC028_20955 PF05649 Peptidase family M13 AC028_20975 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_20975 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AC028_20980 PF01266 FAD dependent oxidoreductase AC028_20985 PF04235 Protein of unknown function (DUF418) AC028_20990 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AC028_20995 PF00877 NlpC/P60 family AC028_21000 PF00877 NlpC/P60 family AC028_21015 PF00375 Sodium:dicarboxylate symporter family AC028_21020 PF00245 Alkaline phosphatase AC028_21025 PF11734 TilS substrate C-terminal domain AC028_21025 PF01171 PP-loop family AC028_21025 PF09179 TilS substrate binding domain AC028_21030 PF02609 Exonuclease VII small subunit AC028_21035 PF00348 Polyprenyl synthetase AC028_21050 PF01523 Putative modulator of DNA gyrase AC028_21055 PF04751 Protein of unknown function (DUF615) AC028_21060 PF01523 Putative modulator of DNA gyrase AC028_21070 PF13502 AsmA-like C-terminal region AC028_21070 PF13116 Protein of unknown function AC028_21075 PF00575 S1 RNA binding domain AC028_21075 PF10150 Ribonuclease E/G family AC028_21080 PF02545 Maf-like protein AC028_21085 PF04402 Protein of unknown function (DUF541) AC028_21100 PF02590 Predicted SPOUT methyltransferase AC028_21115 PF01467 Cytidylyltransferase-like AC028_21130 PF08264 Anticodon-binding domain of tRNA AC028_21130 PF13603 Leucyl-tRNA synthetase, Domain 2 AC028_21130 PF00133 tRNA synthetases class I (I, L, M and V) AC028_21140 PF00085 Thioredoxin AC028_21175 PF04070 Domain of unknown function (DUF378) AC028_21180 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AC028_21190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_21190 PF03466 LysR substrate binding domain AC028_21220 PF00005 ABC transporter AC028_21220 PF00664 ABC transporter transmembrane region AC028_21240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC028_21240 PF00529 HlyD membrane-fusion protein of T1SS AC028_21250 PF01475 Ferric uptake regulator family AC028_21255 PF00749 tRNA synthetases class I (E and Q), catalytic domain AC028_21280 PF06123 Inner membrane protein CreD AC028_21295 PF00512 His Kinase A (phospho-acceptor) domain AC028_21295 PF00672 HAMP domain AC028_21295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_21300 PF00486 Transcriptional regulatory protein, C terminal AC028_21300 PF00072 Response regulator receiver domain AC028_21305 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AC028_21320 PF02559 CarD-like/TRCF domain AC028_21320 PF17757 UvrB interaction domain AC028_21320 PF03461 TRCF domain AC028_21320 PF00270 DEAD/DEAH box helicase AC028_21320 PF00271 Helicase conserved C-terminal domain AC028_21330 PF02895 Signal transducing histidine kinase, homodimeric domain AC028_21330 PF09078 CheY binding AC028_21330 PF01627 Hpt domain AC028_21330 PF01584 CheW-like domain AC028_21330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_21335 PF02203 Tar ligand binding domain homologue AC028_21335 PF00672 HAMP domain AC028_21335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_21340 PF01584 CheW-like domain AC028_21380 PF02810 SEC-C motif AC028_21380 PF03695 Uncharacterised protein family (UPF0149) AC028_21395 PF02796 Helix-turn-helix domain of resolvase AC028_21395 PF00239 Resolvase, N terminal domain AC028_21400 PF04221 RelB antitoxin AC028_21405 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ AC028_21465 PF13091 PLD-like domain AC028_21475 PF01464 Transglycosylase SLT domain AC028_21480 PF00437 Type II/IV secretion system protein AC028_21485 PF03743 Bacterial conjugation TrbI-like protein AC028_21490 PF03524 Conjugal transfer protein AC028_21500 PF04610 TrbL/VirB6 plasmid conjugal transfer protein AC028_21550 PF13614 AAA domain