AC028_00005 PF00072 Response regulator receiver domain AC028_00010 PF01739 CheR methyltransferase, SAM binding domain AC028_00010 PF03705 CheR methyltransferase, all-alpha domain AC028_00015 PF00072 Response regulator receiver domain AC028_00015 PF01339 CheB methylesterase AC028_00020 PF13091 PLD-like domain AC028_00025 PF01431 Peptidase family M13 AC028_00025 PF05649 Peptidase family M13 AC028_00035 PF00300 Histidine phosphatase superfamily (branch 1) AC028_00040 PF04493 Endonuclease V AC028_00050 PF02678 Pirin AC028_00050 PF05726 Pirin C-terminal cupin domain AC028_00060 PF02566 OsmC-like protein AC028_00065 PF02678 Pirin AC028_00065 PF05726 Pirin C-terminal cupin domain AC028_00070 PF02554 AC028_00070 AC028_00070 PF13722 AC028_00070 AC028_00075 PF04328 AC028_00075 AC028_00080 PF12760 Transposase zinc-ribbon domain AC028_00080 PF12762 AC028_00080 AC028_00085 PF13419 Haloacid dehalogenase-like hydrolase AC028_00090 PF12796 Ankyrin repeats (3 copies) AC028_00095 PF11187 Protein of unknown function (DUF2974) AC028_00100 PF05684 AC028_00100 AC028_00115 PF12804 MobA-like NTP transferase domain AC028_00125 PF02625 XdhC and CoxI family AC028_00125 PF13478 XdhC Rossmann domain AC028_00130 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AC028_00130 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AC028_00135 PF00941 FAD binding domain in molybdopterin dehydrogenase AC028_00135 PF03450 CO dehydrogenase flavoprotein C-terminal domain AC028_00140 PF00111 2Fe-2S iron-sulfur cluster binding domain AC028_00140 PF01799 [2Fe-2S] binding domain AC028_00145 PF00107 Zinc-binding dehydrogenase AC028_00145 PF08240 Alcohol dehydrogenase GroES-like domain AC028_00150 PF00990 GGDEF domain AC028_00150 PF02743 Cache domain AC028_00155 PF00436 Single-strand binding protein family AC028_00160 PF00348 Polyprenyl synthetase AC028_00165 PF01738 Dienelactone hydrolase family AC028_00170 PF02875 Mur ligase family, glutamate ligase domain AC028_00170 PF08245 Mur ligase middle domain AC028_00185 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AC028_00185 PF00696 Amino acid kinase family AC028_00185 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AC028_00190 PF02567 Phenazine biosynthesis-like protein AC028_00195 PF02567 Phenazine biosynthesis-like protein AC028_00200 PF05433 AC028_00200 AC028_00205 PF02566 OsmC-like protein AC028_00210 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AC028_00210 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AC028_00215 PF03652 Uncharacterised protein family (UPF0081) AC028_00220 PF02622 Uncharacterized ACR, COG1678 AC028_00230 PF03352 Methyladenine glycosylase AC028_00235 PF01904 Protein of unknown function DUF72 AC028_00240 PF02588 AC028_00240 AC028_00245 PF00437 Type II/IV secretion system protein AC028_00250 PF00437 Type II/IV secretion system protein AC028_00255 PF01168 Alanine racemase, N-terminal domain AC028_00260 PF03807 NADP oxidoreductase coenzyme F420-dependent AC028_00260 PF14748 Pyrroline-5-carboxylate reductase dimerisation AC028_00265 PF00216 Bacterial DNA-binding protein AC028_00270 PF01551 Peptidase family M23 AC028_00275 PF12977 Domain of Unknown Function with PDB structure (DUF3861) AC028_00285 PF07273 Protein of unknown function (DUF1439) AC028_00290 PF01965 DJ-1/PfpI family AC028_00295 PF00856 SET domain AC028_00300 PF02082 Transcriptional regulator AC028_00305 PF01458 Uncharacterized protein family (UPF0051) AC028_00310 PF00005 ABC transporter AC028_00315 PF01458 Uncharacterized protein family (UPF0051) AC028_00320 PF00266 Aminotransferase class-V AC028_00325 PF13673 Acetyltransferase (GNAT) domain AC028_00330 PF00355 Rieske [2Fe-2S] domain AC028_00335 PF00593 TonB dependent receptor AC028_00335 PF07715 TonB-dependent Receptor Plug Domain AC028_00340 PF13640 2OG-Fe(II) oxygenase superfamily AC028_00345 PF08238 Sel1 repeat AC028_00350 PF16357 AC028_00350 AC028_00355 PF10029 AC028_00355 AC028_00360 PF10670 AC028_00360 AC028_00365 PF02424 ApbE family AC028_00370 PF00175 Oxidoreductase NAD-binding domain AC028_00370 PF00258 Flavodoxin AC028_00375 PF05962 HutD AC028_00380 PF12836 Helix-hairpin-helix motif AC028_00385 PF01546 Peptidase family M20/M25/M40 AC028_00385 PF07687 Peptidase dimerisation domain AC028_00390 PF04226 AC028_00390 AC028_00395 PF01636 Phosphotransferase enzyme family AC028_00400 PF00483 Nucleotidyl transferase AC028_00405 PF00308 Bacterial dnaA protein AC028_00410 PF01594 AC028_00410 AC028_00415 PF09839 AC028_00415 AC028_00420 PF00586 AIR synthase related protein, N-terminal domain AC028_00420 PF02769 AIR synthase related protein, C-terminal domain AC028_00430 PF00551 Formyl transferase AC028_00435 PF11306 Protein of unknown function (DUF3108) AC028_00440 PF11306 Protein of unknown function (DUF3108) AC028_00450 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AC028_00455 PF01722 BolA-like protein AC028_00460 PF00571 CBS domain AC028_00460 PF01380 SIS domain AC028_00465 PF08282 haloacid dehalogenase-like hydrolase AC028_00470 PF06835 Lipopolysaccharide-assembly, LptC-related AC028_00475 PF03968 OstA-like protein AC028_00480 PF00005 ABC transporter AC028_00480 PF12399 Branched-chain amino acid ATP-binding cassette transporter AC028_00485 PF00309 AC028_00485 AC028_00485 PF04552 Sigma-54, DNA binding domain AC028_00485 PF04963 Sigma-54 factor, core binding domain AC028_00490 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AC028_00495 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AC028_00500 PF02603 HPr Serine kinase N terminus AC028_00500 PF07475 HPr Serine kinase C-terminal domain AC028_00505 PF03668 AC028_00505 AC028_00510 PF03610 PTS system fructose IIA component AC028_00515 PF00381 PTS HPr component phosphorylation site AC028_00520 PF00391 PEP-utilising enzyme, mobile domain AC028_00520 PF02896 PEP-utilising enzyme, TIM barrel domain AC028_00520 PF05524 PEP-utilising enzyme, N-terminal AC028_00525 PF00571 CBS domain AC028_00525 PF01769 Divalent cation transporter AC028_00525 PF03448 MgtE intracellular N domain AC028_00530 PF00326 Prolyl oligopeptidase family AC028_00535 PF02322 AC028_00535 AC028_00540 PF01654 AC028_00540 AC028_00545 PF01244 Membrane dipeptidase (Peptidase family M19) AC028_00550 PF00324 Amino acid permease AC028_00555 PF00544 Pectate lyase AC028_00560 PF00561 alpha/beta hydrolase fold AC028_00570 PF00196 Bacterial regulatory proteins, luxR family AC028_00570 PF03472 Autoinducer binding domain AC028_00575 PF13520 Amino acid permease AC028_00585 PF12760 Transposase zinc-ribbon domain AC028_00585 PF12762 AC028_00585 AC028_00610 PF12706 Beta-lactamase superfamily domain AC028_00615 PF04820 Tryptophan halogenase AC028_00620 PF13621 Cupin-like domain AC028_00625 PF07277 AC028_00625 AC028_00630 PF00593 TonB dependent receptor AC028_00630 PF07715 TonB-dependent Receptor Plug Domain AC028_00635 PF03421 AC028_00635 AC028_00640 PF01433 Peptidase family M1 AC028_00645 PF00376 MerR family regulatory protein AC028_00645 PF09278 MerR, DNA binding AC028_00650 PF07690 Major Facilitator Superfamily AC028_00660 PF03738 Glutathionylspermidine synthase preATP-grasp AC028_00665 PF06693 AC028_00665 AC028_00670 PF03994 AC028_00670 AC028_00675 PF10679 AC028_00675 AC028_00680 PF07885 Ion channel AC028_00685 PF04012 AC028_00685 AC028_00690 PF09938 AC028_00690 AC028_00695 PF01243 Pyridoxamine 5'-phosphate oxidase AC028_00695 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AC028_00700 PF01202 Shikimate kinase AC028_00705 PF01761 3-dehydroquinate synthase AC028_00715 PF01208 Uroporphyrinogen decarboxylase (URO-D) AC028_00720 PF07690 Major Facilitator Superfamily AC028_00725 PF00072 Response regulator receiver domain AC028_00725 PF00512 His Kinase A (phospho-acceptor) domain AC028_00725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_00725 PF07494 Two component regulator propeller AC028_00725 PF07495 Y_Y_Y domain AC028_00735 PF00665 Integrase core domain AC028_00735 PF13276 AC028_00735 AC028_00740 PF01527 Transposase AC028_00745 PF12760 Transposase zinc-ribbon domain AC028_00745 PF12762 AC028_00745 AC028_00755 PF00072 Response regulator receiver domain AC028_00755 PF00512 His Kinase A (phospho-acceptor) domain AC028_00755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_00755 PF07494 Two component regulator propeller AC028_00755 PF07495 Y_Y_Y domain AC028_00760 PF04264 YceI-like domain AC028_00765 PF01292 Prokaryotic cytochrome b561 AC028_00770 PF04264 YceI-like domain AC028_00775 PF05768 Glutaredoxin-like domain (DUF836) AC028_00780 PF03313 AC028_00780 AC028_00780 PF03315 Serine dehydratase beta chain AC028_00785 PF00561 alpha/beta hydrolase fold AC028_00795 PF00742 Homoserine dehydrogenase AC028_00795 PF03447 Homoserine dehydrogenase, NAD binding domain AC028_00800 PF01053 Cys/Met metabolism PLP-dependent enzyme AC028_00805 PF00561 alpha/beta hydrolase fold AC028_00810 PF01551 Peptidase family M23 AC028_00815 PF00009 Elongation factor Tu GTP binding domain AC028_00815 PF16658 AC028_00815 AC028_00820 PF03006 AC028_00820 AC028_00825 PF05170 AC028_00825 AC028_00830 PF00571 CBS domain AC028_00835 PF00535 Glycosyl transferase family 2 AC028_00840 PF00912 Transglycosylase AC028_00845 PF01430 Hsp33 protein AC028_00855 PF00593 TonB dependent receptor AC028_00855 PF07715 TonB-dependent Receptor Plug Domain AC028_00860 PF00440 Bacterial regulatory proteins, tetR family AC028_00865 PF12146 Putative lysophospholipase AC028_00870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_00870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_00870 PF09317 AC028_00870 AC028_00875 PF06993 AC028_00875 AC028_00880 PF07690 Major Facilitator Superfamily AC028_00885 PF00144 Beta-lactamase AC028_00900 PF01597 Glycine cleavage H-protein AC028_00905 PF01571 Aminomethyltransferase folate-binding domain AC028_00905 PF08669 Glycine cleavage T-protein C-terminal barrel domain AC028_00915 PF02694 AC028_00915 AC028_00920 PF03819 MazG nucleotide pyrophosphohydrolase domain AC028_00925 PF00459 Inositol monophosphatase family AC028_00930 PF00293 NUDIX domain AC028_00935 PF00202 Aminotransferase class-III AC028_00940 PF04452 RNA methyltransferase AC028_00945 PF02685 Glucokinase AC028_00950 PF00593 TonB dependent receptor AC028_00950 PF07715 TonB-dependent Receptor Plug Domain AC028_00955 PF01120 Alpha-L-fucosidase AC028_00955 PF16757 AC028_00955 AC028_00960 PF00704 Glycosyl hydrolases family 18 AC028_00965 PF00728 Glycosyl hydrolase family 20, catalytic domain AC028_00965 PF02838 Glycosyl hydrolase family 20, domain 2 AC028_00965 PF13290 AC028_00965 AC028_00970 PF00703 Glycosyl hydrolases family 2 AC028_00970 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AC028_00975 PF00933 Glycosyl hydrolase family 3 N terminal domain AC028_00975 PF01915 Glycosyl hydrolase family 3 C-terminal domain AC028_00975 PF07691 PA14 domain AC028_00975 PF14310 Fibronectin type III-like domain AC028_00990 PF00294 pfkB family carbohydrate kinase AC028_00995 PF02056 Family 4 glycosyl hydrolase AC028_00995 PF11975 Family 4 glycosyl hydrolase C-terminal domain AC028_01000 PF06824 Protein of unknown function (DUF1237) AC028_01005 PF07971 Glycosyl hydrolase family 92 AC028_01010 PF01301 Glycosyl hydrolases family 35 AC028_01025 PF11747 AC028_01025 AC028_01030 PF13088 BNR repeat-like domain AC028_01040 PF03932 CutC family AC028_01045 PF01112 Asparaginase AC028_01050 PF12760 Transposase zinc-ribbon domain AC028_01050 PF12762 AC028_01050 AC028_01060 PF13302 Acetyltransferase (GNAT) domain AC028_01065 PF01584 CheW-like domain AC028_01070 PF01339 CheB methylesterase AC028_01075 PF00072 Response regulator receiver domain AC028_01075 PF01584 CheW-like domain AC028_01075 PF01627 Hpt domain AC028_01075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_01075 PF02895 Signal transducing histidine kinase, homodimeric domain AC028_01080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_01085 PF01584 CheW-like domain AC028_01090 PF00072 Response regulator receiver domain AC028_01095 PF00072 Response regulator receiver domain AC028_01100 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AC028_01100 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AC028_01105 PF03544 Gram-negative bacterial TonB protein C-terminal AC028_01115 PF00814 Glycoprotease family AC028_01120 PF13307 Helicase C-terminal domain AC028_01130 PF00905 Penicillin binding protein transpeptidase domain AC028_01130 PF00912 Transglycosylase AC028_01130 PF14814 Bifunctional transglycosylase second domain AC028_01135 PF00535 Glycosyl transferase family 2 AC028_01135 PF13692 Glycosyl transferases group 1 AC028_01145 PF02824 TGS domain AC028_01145 PF04607 Region found in RelA / SpoT proteins AC028_01145 PF13291 ACT domain AC028_01145 PF13328 HD domain AC028_01150 PF12706 Beta-lactamase superfamily domain AC028_01155 PF03070 TENA/THI-4/PQQC family AC028_01160 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AC028_01165 PF04055 Radical SAM superfamily AC028_01165 PF13186 Iron-sulfur cluster-binding domain AC028_01165 PF13353 4Fe-4S single cluster domain AC028_01175 PF10142 PhoPQ-activated pathogenicity-related protein AC028_01180 PF02685 Glucokinase AC028_01185 PF00593 TonB dependent receptor AC028_01185 PF07715 TonB-dependent Receptor Plug Domain AC028_01190 PF00270 DEAD/DEAH box helicase AC028_01190 PF00271 Helicase conserved C-terminal domain AC028_01190 PF04408 Helicase associated domain (HA2) AC028_01190 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AC028_01190 PF11898 AC028_01190 AC028_01195 PF00210 Ferritin-like domain AC028_01200 PF00270 DEAD/DEAH box helicase AC028_01200 PF00271 Helicase conserved C-terminal domain AC028_01200 PF00570 HRDC domain AC028_01200 PF09382 RQC domain AC028_01200 PF16124 AC028_01200 AC028_01210 PF00072 Response regulator receiver domain AC028_01220 PF01479 S4 domain AC028_01235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_01235 PF00672 HAMP domain AC028_01235 PF12729 AC028_01235 AC028_01240 PF01810 AC028_01240 AC028_01245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_01245 PF03466 LysR substrate binding domain AC028_01250 PF00072 Response regulator receiver domain AC028_01255 PF07536 AC028_01255 AC028_01255 PF08448 PAS fold AC028_01260 PF06508 Queuosine biosynthesis protein QueC AC028_01270 PF04055 Radical SAM superfamily AC028_01270 PF13394 4Fe-4S single cluster domain AC028_01275 PF13525 Outer membrane lipoprotein AC028_01275 PF16331 AC028_01275 AC028_01280 PF00691 OmpA family AC028_01285 PF04052 TolB amino-terminal domain AC028_01285 PF07676 WD40-like Beta Propeller Repeat AC028_01290 PF13103 TonB C terminal AC028_01295 PF02472 Biopolymer transport protein ExbD/TolR AC028_01300 PF01618 AC028_01300 AC028_01305 PF03061 Thioesterase superfamily AC028_01310 PF05491 Holliday junction DNA helicase ruvB C-terminus AC028_01310 PF05496 Holliday junction DNA helicase ruvB N-terminus AC028_01315 PF02705 AC028_01315 AC028_01320 PF01330 RuvA N terminal domain AC028_01320 PF07499 RuvA, C-terminal domain AC028_01320 PF14520 Helix-hairpin-helix domain AC028_01325 PF02075 Crossover junction endodeoxyribonuclease RuvC AC028_01330 PF01709 Transcriptional regulator AC028_01335 PF12697 Alpha/beta hydrolase family AC028_01340 PF00583 Acetyltransferase (GNAT) family AC028_01345 PF00152 tRNA synthetases class II (D, K and N) AC028_01345 PF01336 OB-fold nucleic acid binding domain AC028_01345 PF02938 GAD domain AC028_01350 PF11218 AC028_01350 AC028_01355 PF09723 AC028_01355 AC028_01360 PF07690 Major Facilitator Superfamily AC028_01365 PF00593 TonB dependent receptor AC028_01365 PF07715 TonB-dependent Receptor Plug Domain AC028_01370 PF04185 Phosphoesterase family AC028_01370 PF05506 AC028_01370 AC028_01385 PF12760 Transposase zinc-ribbon domain AC028_01385 PF12762 AC028_01385 AC028_01395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_01395 PF03466 LysR substrate binding domain AC028_01400 PF14317 AC028_01400 AC028_01405 PF00005 ABC transporter AC028_01405 PF12848 ABC transporter AC028_01405 PF16326 AC028_01405 AC028_01410 PF00593 TonB dependent receptor AC028_01410 PF07715 TonB-dependent Receptor Plug Domain AC028_01415 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AC028_01420 PF00593 TonB dependent receptor AC028_01420 PF07715 TonB-dependent Receptor Plug Domain AC028_01425 PF00593 TonB dependent receptor AC028_01425 PF07715 TonB-dependent Receptor Plug Domain AC028_01430 PF00067 Cytochrome P450 AC028_01435 PF00999 Sodium/hydrogen exchanger family AC028_01435 PF02254 TrkA-N domain AC028_01445 PF00593 TonB dependent receptor AC028_01445 PF07715 TonB-dependent Receptor Plug Domain AC028_01450 PF02655 ATP-grasp domain AC028_01455 PF04183 IucA / IucC family AC028_01455 PF06276 Ferric iron reductase FhuF-like transporter AC028_01460 PF07690 Major Facilitator Superfamily AC028_01465 PF04183 IucA / IucC family AC028_01465 PF06276 Ferric iron reductase FhuF-like transporter AC028_01470 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AC028_01470 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AC028_01490 PF01527 Transposase AC028_01495 PF00665 Integrase core domain AC028_01495 PF13276 AC028_01495 AC028_01505 PF02654 AC028_01505 AC028_01510 PF00300 Histidine phosphatase superfamily (branch 1) AC028_01515 PF02277 Phosphoribosyltransferase AC028_01520 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AC028_01525 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AC028_01525 PF07685 CobB/CobQ-like glutamine amidotransferase domain AC028_01530 PF00155 Aminotransferase class I and II AC028_01535 PF03186 AC028_01535 AC028_01540 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AC028_01560 PF00593 TonB dependent receptor AC028_01560 PF07715 TonB-dependent Receptor Plug Domain AC028_01570 PF00004 ATPase family associated with various cellular activities (AAA) AC028_01570 PF02861 Clp amino terminal domain AC028_01570 PF07724 AAA domain (Cdc48 subfamily) AC028_01570 PF10431 C-terminal, D2-small domain, of ClpB protein AC028_01575 PF00005 ABC transporter AC028_01580 PF00528 Binding-protein-dependent transport system inner membrane component AC028_01590 PF00248 Aldo/keto reductase family AC028_01595 PF00296 Luciferase-like monooxygenase AC028_01600 PF12760 Transposase zinc-ribbon domain AC028_01600 PF12762 AC028_01600 AC028_01605 PF00593 TonB dependent receptor AC028_01605 PF07715 TonB-dependent Receptor Plug Domain AC028_01610 PF01541 GIY-YIG catalytic domain AC028_01615 PF14497 Glutathione S-transferase, C-terminal domain AC028_01620 PF11219 AC028_01620 AC028_01625 PF07007 Protein of unknown function (DUF1311) AC028_01640 PF12098 AC028_01640 AC028_01645 PF00593 TonB dependent receptor AC028_01645 PF07715 TonB-dependent Receptor Plug Domain AC028_01650 PF02358 Trehalose-phosphatase AC028_01655 PF00723 Glycosyl hydrolases family 15 AC028_01660 PF00982 Glycosyltransferase family 20 AC028_01665 PF01011 PQQ enzyme repeat AC028_01665 PF13360 PQQ-like domain AC028_01670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_01675 PF04134 AC028_01675 AC028_01680 PF13761 AC028_01680 AC028_01685 PF02578 Multi-copper polyphenol oxidoreductase laccase AC028_01690 PF00849 RNA pseudouridylate synthase AC028_01695 PF13525 Outer membrane lipoprotein AC028_01705 PF00795 Carbon-nitrogen hydrolase AC028_01705 PF02540 NAD synthase AC028_01710 PF04480 Protein of unknown function (DUF559) AC028_01715 PF00549 CoA-ligase AC028_01715 PF02629 CoA binding domain AC028_01720 PF00549 CoA-ligase AC028_01720 PF08442 ATP-grasp domain AC028_01725 PF00512 His Kinase A (phospho-acceptor) domain AC028_01725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_01730 PF00072 Response regulator receiver domain AC028_01730 PF00158 Sigma-54 interaction domain AC028_01730 PF02954 Bacterial regulatory protein, Fis family AC028_01735 PF00437 Type II/IV secretion system protein AC028_01735 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AC028_01740 PF00114 Pilin (bacterial filament) AC028_01740 PF07963 Prokaryotic N-terminal methylation motif AC028_01745 PF00114 Pilin (bacterial filament) AC028_01745 PF07963 Prokaryotic N-terminal methylation motif AC028_01750 PF00482 Type II secretion system (T2SS), protein F AC028_01755 PF01478 Type IV leader peptidase family AC028_01755 PF06750 AC028_01755 AC028_01760 PF01121 Dephospho-CoA kinase AC028_01765 PF01609 Transposase DDE domain AC028_01765 PF05598 AC028_01765 AC028_01770 PF13276 AC028_01770 AC028_01770 PF13683 AC028_01770 AC028_01775 PF01527 Transposase AC028_01780 PF08845 AC028_01780 AC028_01785 PF00512 His Kinase A (phospho-acceptor) domain AC028_01785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_01790 PF00072 Response regulator receiver domain AC028_01790 PF00486 Transcriptional regulatory protein, C terminal AC028_01800 PF08443 RimK-like ATP-grasp domain AC028_01805 PF00128 Alpha amylase, catalytic domain AC028_01805 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AC028_01810 PF12760 Transposase zinc-ribbon domain AC028_01810 PF12762 AC028_01810 AC028_01815 PF00816 H-NS histone family AC028_01825 PF00565 Staphylococcal nuclease homologue AC028_01840 PF13276 AC028_01840 AC028_01840 PF13683 AC028_01840 AC028_01845 PF01527 Transposase AC028_01860 PF00657 GDSL-like Lipase/Acylhydrolase AC028_01860 PF03797 Autotransporter beta-domain AC028_01865 PF02597 ThiS family AC028_01870 PF05690 Thiazole biosynthesis protein ThiG AC028_01875 PF02390 Putative methyltransferase AC028_01880 PF02080 TrkA-C domain AC028_01880 PF03600 Citrate transporter AC028_01885 PF00355 Rieske [2Fe-2S] domain AC028_01900 PF01557 Fumarylacetoacetate (FAA) hydrolase family AC028_01905 PF01741 Large-conductance mechanosensitive channel, MscL AC028_01910 PF04389 Peptidase family M28 AC028_01920 PF00356 Bacterial regulatory proteins, lacI family AC028_01920 PF13377 Periplasmic binding protein-like domain AC028_01925 PF00593 TonB dependent receptor AC028_01925 PF07715 TonB-dependent Receptor Plug Domain AC028_01930 PF00703 Glycosyl hydrolases family 2 AC028_01930 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AC028_01930 PF02837 Glycosyl hydrolases family 2, sugar binding domain AC028_01930 PF13385 Concanavalin A-like lectin/glucanases superfamily AC028_01935 PF10566 Glycoside hydrolase 97 AC028_01935 PF14508 Glycosyl-hydrolase 97 N-terminal AC028_01935 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AC028_01940 PF03080 AC028_01940 AC028_01945 PF00135 Carboxylesterase family AC028_01950 PF00588 SpoU rRNA Methylase family AC028_01950 PF08032 RNA 2'-O ribose methyltransferase substrate binding AC028_01955 PF13302 Acetyltransferase (GNAT) domain AC028_01960 PF01433 Peptidase family M1 AC028_01960 PF11838 ERAP1-like C-terminal domain AC028_01965 PF07791 AC028_01965 AC028_01970 PF07791 AC028_01970 AC028_01985 PF01527 Transposase AC028_01990 PF13276 AC028_01990 AC028_01990 PF13683 AC028_01990 AC028_02005 PF00665 Integrase core domain AC028_02005 PF13276 AC028_02005 AC028_02010 PF01527 Transposase AC028_02020 PF01609 Transposase DDE domain AC028_02020 PF05598 AC028_02020 AC028_02025 PF13276 AC028_02025 AC028_02025 PF13683 AC028_02025 AC028_02030 PF01527 Transposase AC028_02035 PF12760 Transposase zinc-ribbon domain AC028_02035 PF12762 AC028_02035 AC028_02045 PF00873 AcrB/AcrD/AcrF family AC028_02050 PF16576 AC028_02050 AC028_02055 PF00009 Elongation factor Tu GTP binding domain AC028_02055 PF01583 Adenylylsulphate kinase AC028_02060 PF01507 Phosphoadenosine phosphosulfate reductase family AC028_02065 PF00175 Oxidoreductase NAD-binding domain AC028_02065 PF00258 Flavodoxin AC028_02065 PF00667 FAD binding domain AC028_02070 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AC028_02070 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AC028_02075 PF01507 Phosphoadenosine phosphosulfate reductase family AC028_02080 PF03929 AC028_02080 AC028_02085 PF00593 TonB dependent receptor AC028_02085 PF07715 TonB-dependent Receptor Plug Domain AC028_02090 PF11162 AC028_02090 AC028_02095 PF01590 GAF domain AC028_02095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_02105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_02105 PF03466 LysR substrate binding domain AC028_02110 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AC028_02115 PF00291 Pyridoxal-phosphate dependent enzyme AC028_02120 PF04191 Phospholipid methyltransferase AC028_02130 PF00274 Fructose-bisphosphate aldolase class-I AC028_02135 PF00224 Pyruvate kinase, barrel domain AC028_02135 PF02887 Pyruvate kinase, alpha/beta domain AC028_02140 PF13419 Haloacid dehalogenase-like hydrolase AC028_02145 PF00162 Phosphoglycerate kinase AC028_02150 PF13163 AC028_02150 AC028_02155 PF10101 AC028_02155 AC028_02165 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AC028_02165 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AC028_02170 PF08332 Calcium/calmodulin dependent protein kinase II Association AC028_02175 PF03922 OmpW family AC028_02185 PF02265 S1/P1 Nuclease AC028_02190 PF00753 Metallo-beta-lactamase superfamily AC028_02195 PF13531 Bacterial extracellular solute-binding protein AC028_02200 PF00528 Binding-protein-dependent transport system inner membrane component AC028_02205 PF00005 ABC transporter AC028_02215 PF03544 Gram-negative bacterial TonB protein C-terminal AC028_02215 PF05569 BlaR1 peptidase M56 AC028_02220 PF03965 Penicillinase repressor AC028_02225 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AC028_02230 PF16670 AC028_02230 AC028_02235 PF00593 TonB dependent receptor AC028_02235 PF07715 TonB-dependent Receptor Plug Domain AC028_02240 PF01471 Putative peptidoglycan binding domain AC028_02240 PF03734 L,D-transpeptidase catalytic domain AC028_02245 PF01551 Peptidase family M23 AC028_02250 PF00593 TonB dependent receptor AC028_02250 PF07715 TonB-dependent Receptor Plug Domain AC028_02270 PF01527 Transposase AC028_02275 PF00665 Integrase core domain AC028_02275 PF13276 AC028_02275 AC028_02285 PF01609 Transposase DDE domain AC028_02285 PF05598 AC028_02285 AC028_02290 PF01609 Transposase DDE domain AC028_02290 PF05598 AC028_02290 AC028_02295 PF00456 Transketolase, thiamine diphosphate binding domain AC028_02295 PF02779 Transketolase, pyrimidine binding domain AC028_02295 PF02780 Transketolase, C-terminal domain AC028_02305 PF13584 AC028_02305 AC028_02310 PF00515 Tetratricopeptide repeat AC028_02310 PF13519 von Willebrand factor type A domain AC028_02315 PF00092 von Willebrand factor type A domain AC028_02320 PF14316 AC028_02320 AC028_02325 PF01882 AC028_02325 AC028_02330 PF07726 ATPase family associated with various cellular activities (AAA) AC028_02335 PF00263 AC028_02335 AC028_02335 PF03958 Bacterial type II/III secretion system short domain AC028_02335 PF07660 Secretin and TonB N terminus short domain AC028_02340 PF04351 Pilus assembly protein, PilP AC028_02345 PF04350 Pilus assembly protein, PilO AC028_02350 PF05137 AC028_02350 AC028_02355 PF11104 Type IV pilus assembly protein PilM; AC028_02360 PF00905 Penicillin binding protein transpeptidase domain AC028_02360 PF00912 Transglycosylase AC028_02360 PF17092 AC028_02360 AC028_02370 PF00285 Citrate synthase AC028_02375 PF01197 Ribosomal protein L31 AC028_02380 PF01156 Inosine-uridine preferring nucleoside hydrolase AC028_02385 PF00270 DEAD/DEAH box helicase AC028_02385 PF00271 Helicase conserved C-terminal domain AC028_02385 PF14520 Helix-hairpin-helix domain AC028_02385 PF17191 AC028_02385 AC028_02390 PF01042 Endoribonuclease L-PSP AC028_02395 PF04295 AC028_02395 AC028_02395 PF08666 SAF domain AC028_02400 PF03573 outer membrane porin, OprD family AC028_02405 PF13378 Enolase C-terminal domain-like AC028_02410 PF07690 Major Facilitator Superfamily AC028_02415 PF00171 Aldehyde dehydrogenase family AC028_02420 PF00701 Dihydrodipicolinate synthetase family AC028_02425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_02425 PF03466 LysR substrate binding domain AC028_02430 PF02824 TGS domain AC028_02430 PF04607 Region found in RelA / SpoT proteins AC028_02430 PF13291 ACT domain AC028_02430 PF13328 HD domain AC028_02435 PF01192 RNA polymerase Rpb6 AC028_02440 PF00625 Guanylate kinase AC028_02445 PF03755 AC028_02445 AC028_02445 PF08340 AC028_02445 AC028_02450 PF01138 3' exoribonuclease family, domain 1 AC028_02450 PF03725 3' exoribonuclease family, domain 2 AC028_02455 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AC028_02460 PF01725 Ham1 family AC028_02465 PF04055 Radical SAM superfamily AC028_02465 PF06969 HemN C-terminal domain AC028_02470 PF07793 AC028_02470 AC028_02475 PF07238 PilZ domain AC028_02480 PF00557 Metallopeptidase family M24 AC028_02485 PF00557 Metallopeptidase family M24 AC028_02485 PF05195 Aminopeptidase P, N-terminal domain AC028_02490 PF03695 Uncharacterised protein family (UPF0149) AC028_02500 PF05164 Cell division protein ZapA AC028_02505 PF01812 5-formyltetrahydrofolate cyclo-ligase family AC028_02510 PF01878 EVE domain AC028_02515 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AC028_02520 PF02643 Uncharacterized ACR, COG1430 AC028_02525 PF13369 AC028_02525 AC028_02525 PF13371 Tetratricopeptide repeat AC028_02530 PF00301 Rubredoxin AC028_02535 PF02581 Thiamine monophosphate synthase/TENI AC028_02540 PF07715 TonB-dependent Receptor Plug Domain AC028_02540 PF13620 Carboxypeptidase regulatory-like domain AC028_02545 PF00202 Aminotransferase class-III AC028_02550 PF00196 Bacterial regulatory proteins, luxR family AC028_02550 PF13424 Tetratricopeptide repeat AC028_02555 PF00127 Copper binding proteins, plastocyanin/azurin family AC028_02560 PF00155 Aminotransferase class I and II AC028_02565 PF01042 Endoribonuclease L-PSP AC028_02570 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AC028_02575 PF01593 Flavin containing amine oxidoreductase AC028_02580 PF00593 TonB dependent receptor AC028_02580 PF07715 TonB-dependent Receptor Plug Domain AC028_02590 PF00202 Aminotransferase class-III AC028_02595 PF00520 Ion transport protein AC028_02600 PF00106 short chain dehydrogenase AC028_02610 PF01569 PAP2 superfamily AC028_02610 PF09335 AC028_02610 AC028_02610 PF14067 AC028_02610 AC028_02615 PF01062 AC028_02615 AC028_02620 PF02190 ATP-dependent protease La (LON) domain AC028_02625 PF01225 Mur ligase family, catalytic domain AC028_02625 PF02875 Mur ligase family, glutamate ligase domain AC028_02625 PF08245 Mur ligase middle domain AC028_02630 PF00406 Adenylate kinase AC028_02635 PF00365 Phosphofructokinase AC028_02645 PF03030 Inorganic H+ pyrophosphatase AC028_02655 PF00719 Inorganic pyrophosphatase AC028_02660 PF08668 HDOD domain AC028_02665 PF00593 TonB dependent receptor AC028_02665 PF07715 TonB-dependent Receptor Plug Domain AC028_02670 PF12833 Helix-turn-helix domain AC028_02675 PF00486 Transcriptional regulatory protein, C terminal AC028_02675 PF07676 WD40-like Beta Propeller Repeat AC028_02680 PF01964 ThiC family AC028_02680 PF13667 ThiC-associated domain AC028_02685 PF00593 TonB dependent receptor AC028_02685 PF07715 TonB-dependent Receptor Plug Domain AC028_02690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_02695 PF01019 Gamma-glutamyltranspeptidase AC028_02700 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AC028_02700 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain AC028_02705 PF00205 Thiamine pyrophosphate enzyme, central domain AC028_02705 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AC028_02705 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AC028_02710 PF13710 ACT domain AC028_02715 PF00291 Pyridoxal-phosphate dependent enzyme AC028_02720 PF00682 HMGL-like AC028_02720 PF08502 LeuA allosteric (dimerisation) domain AC028_02725 PF00180 Isocitrate/isopropylmalate dehydrogenase AC028_02730 PF00694 Aconitase C-terminal domain AC028_02735 PF00330 Aconitase family (aconitate hydratase) AC028_02740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_02740 PF03466 LysR substrate binding domain AC028_02745 PF00990 GGDEF domain AC028_02745 PF07494 Two component regulator propeller AC028_02745 PF07495 Y_Y_Y domain AC028_02750 PF00440 Bacterial regulatory proteins, tetR family AC028_02750 PF14246 AefR-like transcriptional repressor, C-terminal region AC028_02755 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AC028_02760 PF02321 Outer membrane efflux protein AC028_02765 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AC028_02770 PF03279 AC028_02770 AC028_02775 PF04932 AC028_02775 AC028_02780 PF00534 Glycosyl transferases group 1 AC028_02780 PF13439 Glycosyltransferase Family 4 AC028_02785 PF10276 Zinc-finger domain AC028_02805 PF13276 AC028_02805 AC028_02805 PF13683 AC028_02805 AC028_02810 PF01527 Transposase AC028_02815 PF01609 Transposase DDE domain AC028_02815 PF05598 AC028_02815 AC028_02820 PF00155 Aminotransferase class I and II AC028_02825 PF13472 GDSL-like Lipase/Acylhydrolase family AC028_02830 PF08242 Methyltransferase domain AC028_02835 PF01522 Polysaccharide deacetylase AC028_02840 PF00462 Glutaredoxin AC028_02840 PF00581 Rhodanese-like domain AC028_02850 PF06041 Bacterial protein of unknown function (DUF924) AC028_02855 PF01979 Amidohydrolase family AC028_02860 PF01979 Amidohydrolase family AC028_02870 PF09284 Rhamnogalacturonase B, N-terminal AC028_02870 PF14683 Polysaccharide lyase family 4, domain III AC028_02870 PF14686 Polysaccharide lyase family 4, domain II AC028_02875 PF01670 Glycosyl hydrolase family 12 AC028_02880 PF02645 Uncharacterised protein, DegV family COG1307 AC028_02885 PF01327 Polypeptide deformylase AC028_02895 PF03960 ArsC family AC028_02905 PF02225 PA domain AC028_02910 PF05420 AC028_02910 AC028_02910 PF13432 Tetratricopeptide repeat AC028_02910 PF14559 Tetratricopeptide repeat AC028_02915 PF01270 Glycosyl hydrolases family 8 AC028_02920 PF03170 Bacterial cellulose synthase subunit AC028_02925 PF00535 Glycosyl transferase family 2 AC028_02925 PF03552 Cellulose synthase AC028_02925 PF07238 PilZ domain AC028_02940 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AC028_02955 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AC028_02955 PF13641 Glycosyltransferase like family 2 AC028_02965 PF00535 Glycosyl transferase family 2 AC028_02975 PF01636 Phosphotransferase enzyme family AC028_02980 PF00593 TonB dependent receptor AC028_02980 PF07715 TonB-dependent Receptor Plug Domain AC028_02985 PF04973 AC028_02985 AC028_02990 PF00392 Bacterial regulatory proteins, gntR family AC028_02990 PF07702 UTRA domain AC028_03000 PF00263 AC028_03000 AC028_03000 PF03958 Bacterial type II/III secretion system short domain AC028_03010 PF10741 AC028_03010 AC028_03015 PF05137 AC028_03015 AC028_03020 PF03934 Type II secretion system (T2SS), protein K AC028_03030 PF07963 Prokaryotic N-terminal methylation motif AC028_03035 PF12019 Type II transport protein GspH AC028_03040 PF08334 Type II secretion system (T2SS), protein G AC028_03045 PF00482 Type II secretion system (T2SS), protein F AC028_03050 PF00437 Type II/IV secretion system protein AC028_03050 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AC028_03055 PF00082 Subtilase family AC028_03055 PF04151 Bacterial pre-peptidase C-terminal domain AC028_03065 PF01609 Transposase DDE domain AC028_03065 PF05598 AC028_03065 AC028_03070 PF12760 Transposase zinc-ribbon domain AC028_03070 PF12762 AC028_03070 AC028_03080 PF02769 AIR synthase related protein, C-terminal domain AC028_03080 PF13507 CobB/CobQ-like glutamine amidotransferase domain AC028_03085 PF10411 Disulfide bond isomerase protein N-terminus AC028_03085 PF13098 Thioredoxin-like domain AC028_03090 PF00589 Phage integrase family AC028_03090 PF02899 Phage integrase, N-terminal SAM-like domain AC028_03095 PF06271 AC028_03095 AC028_03105 PF03739 AC028_03105 AC028_03110 PF03739 AC028_03110 AC028_03115 PF00883 Cytosol aminopeptidase family, catalytic domain AC028_03115 PF02789 Cytosol aminopeptidase family, N-terminal domain AC028_03125 PF04364 DNA polymerase III chi subunit, HolC AC028_03130 PF00133 tRNA synthetases class I (I, L, M and V) AC028_03130 PF08264 Anticodon-binding domain of tRNA AC028_03130 PF10458 Valyl tRNA synthetase tRNA binding arm AC028_03135 PF00593 TonB dependent receptor AC028_03135 PF07715 TonB-dependent Receptor Plug Domain AC028_03140 PF01464 Transglycosylase SLT domain AC028_03140 PF14718 Soluble lytic murein transglycosylase L domain AC028_03150 PF00583 Acetyltransferase (GNAT) family AC028_03160 PF01066 CDP-alcohol phosphatidyltransferase AC028_03165 PF13511 AC028_03165 AC028_03170 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AC028_03170 PF03129 Anticodon binding domain AC028_03170 PF04073 Aminoacyl-tRNA editing domain AC028_03175 PF12760 Transposase zinc-ribbon domain AC028_03175 PF12762 AC028_03175 AC028_03185 PF12760 Transposase zinc-ribbon domain AC028_03185 PF12762 AC028_03185 AC028_03195 PF01555 DNA methylase AC028_03210 PF12728 Helix-turn-helix domain AC028_03215 PF06067 AC028_03215 AC028_03225 PF05284 AC028_03225 AC028_03235 PF11171 AC028_03235 AC028_03240 PF10074 AC028_03240 AC028_03245 PF12728 Helix-turn-helix domain AC028_03255 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AC028_03265 PF11000 AC028_03265 AC028_03270 PF10502 Signal peptidase, peptidase S26 AC028_03275 PF11843 AC028_03275 AC028_03280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_03280 PF03466 LysR substrate binding domain AC028_03285 PF07690 Major Facilitator Superfamily AC028_03290 PF07690 Major Facilitator Superfamily AC028_03305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_03305 PF03466 LysR substrate binding domain AC028_03310 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AC028_03315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_03315 PF03466 LysR substrate binding domain AC028_03325 PF02534 Type IV secretory system Conjugative DNA transfer AC028_03330 PF01402 Ribbon-helix-helix protein, copG family AC028_03335 PF00437 Type II/IV secretion system protein AC028_03340 PF04956 AC028_03340 AC028_03345 PF05101 AC028_03345 AC028_03350 PF03135 AC028_03350 AC028_03365 PF04610 AC028_03365 AC028_03370 PF04335 VirB8 protein AC028_03375 PF03524 Conjugal transfer protein AC028_03380 PF03743 Bacterial conjugation TrbI-like protein AC028_03385 PF10038 AC028_03385 AC028_03390 PF01588 Putative tRNA binding domain AC028_03390 PF09334 tRNA synthetases class I (M) AC028_03395 PF12710 haloacid dehalogenase-like hydrolase AC028_03420 PF04542 Sigma-70 region 2 AC028_03420 PF08281 Sigma-70, region 4 AC028_03425 PF10099 AC028_03425 AC028_03430 PF00487 AC028_03430 AC028_03435 PF01593 Flavin containing amine oxidoreductase AC028_03440 PF07103 AC028_03440 AC028_03445 PF02353 Mycolic acid cyclopropane synthetase AC028_03450 PF11086 AC028_03450 AC028_03455 PF06966 AC028_03455 AC028_03460 PF02353 Mycolic acid cyclopropane synthetase AC028_03465 PF01042 Endoribonuclease L-PSP AC028_03470 PF06197 AC028_03470 AC028_03475 PF09924 Uncharacterized conserved protein (DUF2156) AC028_03480 PF06057 Bacterial virulence protein (VirJ) AC028_03485 PF09791 AC028_03485 AC028_03495 PF13563 2'-5' RNA ligase superfamily AC028_03500 PF09537 Domain of unknown function (DUF2383) AC028_03510 PF07690 Major Facilitator Superfamily AC028_03515 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AC028_03520 PF03831 PhnA protein AC028_03520 PF08274 PhnA Zinc-Ribbon AC028_03525 PF01545 Cation efflux family AC028_03530 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AC028_03535 PF06723 MreB/Mbl protein AC028_03550 PF00924 Mechanosensitive ion channel AC028_03555 PF01258 Prokaryotic dksA/traR C4-type zinc finger AC028_03560 PF10982 Protein of unknown function (DUF2789) AC028_03565 PF07043 AC028_03565 AC028_03570 PF01863 Protein of unknown function DUF45 AC028_03575 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AC028_03575 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AC028_03580 PF00082 Subtilase family AC028_03580 PF03797 Autotransporter beta-domain AC028_03580 PF12951 AC028_03580 AC028_03585 PF00108 Thiolase, N-terminal domain AC028_03585 PF02803 Thiolase, C-terminal domain AC028_03605 PF04519 AC028_03605 AC028_03625 PF01068 ATP dependent DNA ligase domain AC028_03625 PF04675 DNA ligase N terminus AC028_03625 PF04679 ATP dependent DNA ligase C terminal region AC028_03630 PF00270 DEAD/DEAH box helicase AC028_03630 PF00271 Helicase conserved C-terminal domain AC028_03630 PF08494 AC028_03630 AC028_03635 PF00149 Calcineurin-like phosphoesterase AC028_03640 PF01494 FAD binding domain AC028_03645 PF00313 'Cold-shock' DNA-binding domain AC028_03650 PF01048 Phosphorylase superfamily AC028_03655 PF00156 Phosphoribosyl transferase domain AC028_03660 PF00933 Glycosyl hydrolase family 3 N terminal domain AC028_03665 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AC028_03670 PF13450 NAD(P)-binding Rossmann-like domain AC028_03675 PF01323 DSBA-like thioredoxin domain AC028_03680 PF01928 CYTH domain AC028_03685 PF05958 tRNA (Uracil-5-)-methyltransferase AC028_03690 PF00072 Response regulator receiver domain AC028_03690 PF01627 Hpt domain AC028_03695 PF02565 Recombination protein O C terminal AC028_03695 PF11967 Recombination protein O N terminal AC028_03700 PF01926 50S ribosome-binding GTPase AC028_03700 PF07650 KH domain AC028_03705 PF00035 Double-stranded RNA binding motif AC028_03705 PF14622 Ribonuclease-III-like AC028_03710 PF16137 AC028_03710 AC028_03715 PF00717 Peptidase S24-like AC028_03720 PF00009 Elongation factor Tu GTP binding domain AC028_03720 PF00679 Elongation factor G C-terminus AC028_03720 PF03144 Elongation factor Tu domain 2 AC028_03720 PF06421 GTP-binding protein LepA C-terminus AC028_03725 PF13180 PDZ domain AC028_03725 PF13365 Trypsin-like peptidase domain AC028_03730 PF03872 Anti sigma-E protein RseA, N-terminal domain AC028_03735 PF04542 Sigma-70 region 2 AC028_03735 PF08281 Sigma-70, region 4 AC028_03740 PF00378 Enoyl-CoA hydratase/isomerase family AC028_03740 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AC028_03740 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AC028_03750 PF13683 AC028_03750 AC028_03755 PF12760 Transposase zinc-ribbon domain AC028_03755 PF12762 AC028_03755 AC028_03760 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AC028_03765 PF01564 Spermine/spermidine synthase AC028_03765 PF17284 AC028_03765 AC028_03770 PF09851 AC028_03770 AC028_03770 PF14470 Bacterial PH domain AC028_03795 PF00543 Nitrogen regulatory protein P-II AC028_03800 PF04380 AC028_03800 AC028_03805 PF01078 Magnesium chelatase, subunit ChlI AC028_03805 PF13335 AC028_03805 AC028_03805 PF13541 Subunit ChlI of Mg-chelatase AC028_03810 PF08212 Lipocalin-like domain AC028_03820 PF00563 EAL domain AC028_03820 PF12792 AC028_03820 AC028_03825 PF00487 AC028_03825 AC028_03830 PF00111 2Fe-2S iron-sulfur cluster binding domain AC028_03830 PF00175 Oxidoreductase NAD-binding domain AC028_03830 PF00970 Oxidoreductase FAD-binding domain AC028_03835 PF00440 Bacterial regulatory proteins, tetR family AC028_03840 PF12760 Transposase zinc-ribbon domain AC028_03840 PF12762 AC028_03840 AC028_03850 PF01145 SPFH domain / Band 7 family AC028_03855 PF01139 tRNA-splicing ligase RtcB AC028_03865 PF00326 Prolyl oligopeptidase family AC028_03870 PF11379 AC028_03870 AC028_03890 PF13628 AC028_03890 AC028_03900 PF00072 Response regulator receiver domain AC028_03900 PF00486 Transcriptional regulatory protein, C terminal AC028_03905 PF00512 His Kinase A (phospho-acceptor) domain AC028_03905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_03915 PF11769 AC028_03915 AC028_03930 PF13180 PDZ domain AC028_03930 PF13365 Trypsin-like peptidase domain AC028_03950 PF01594 AC028_03950 AC028_03955 PF13419 Haloacid dehalogenase-like hydrolase AC028_03960 PF00883 Cytosol aminopeptidase family, catalytic domain AC028_03970 PF00199 Catalase AC028_03975 PF01292 Prokaryotic cytochrome b561 AC028_03980 PF06283 Trehalose utilisation AC028_03985 PF00072 Response regulator receiver domain AC028_03985 PF00196 Bacterial regulatory proteins, luxR family AC028_03990 PF07730 Histidine kinase AC028_03995 PF16576 AC028_03995 AC028_04000 PF00005 ABC transporter AC028_04005 PF02687 AC028_04005 AC028_04005 PF12704 MacB-like periplasmic core domain AC028_04010 PF02687 AC028_04010 AC028_04010 PF12704 MacB-like periplasmic core domain AC028_04015 PF12697 Alpha/beta hydrolase family AC028_04020 PF00892 EamA-like transporter family AC028_04025 PF00892 EamA-like transporter family AC028_04035 PF02225 PA domain AC028_04035 PF04389 Peptidase family M28 AC028_04040 PF00753 Metallo-beta-lactamase superfamily AC028_04045 PF00579 tRNA synthetases class I (W and Y) AC028_04050 PF05532 CsbD-like AC028_04055 PF08085 AC028_04055 AC028_04060 PF08085 AC028_04060 AC028_04065 PF00491 Arginase family AC028_04070 PF03259 Roadblock/LC7 domain AC028_04090 PF02223 Thymidylate kinase AC028_04100 PF05036 Sporulation related domain AC028_04105 PF03309 Type III pantothenate kinase AC028_04110 PF02237 Biotin protein ligase C terminal domain AC028_04110 PF03099 Biotin/lipoate A/B protein ligase family AC028_04110 PF08279 HTH domain AC028_04120 PF06167 Glucose-regulated metallo-peptidase M90 AC028_04125 PF07394 AC028_04125 AC028_04130 PF08811 AC028_04130 AC028_04135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_04140 PF00072 Response regulator receiver domain AC028_04140 PF00486 Transcriptional regulatory protein, C terminal AC028_04150 PF01207 Dihydrouridine synthase (Dus) AC028_04160 PF12796 Ankyrin repeats (3 copies) AC028_04165 PF00199 Catalase AC028_04165 PF06628 Catalase-related immune-responsive AC028_04175 PF13307 Helicase C-terminal domain AC028_04190 PF01488 Shikimate / quinate 5-dehydrogenase AC028_04190 PF08501 Shikimate dehydrogenase substrate binding domain AC028_04195 PF07676 WD40-like Beta Propeller Repeat AC028_04200 PF00175 Oxidoreductase NAD-binding domain AC028_04200 PF00258 Flavodoxin AC028_04200 PF03929 AC028_04200 AC028_04205 PF01223 DNA/RNA non-specific endonuclease AC028_04210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_04210 PF03466 LysR substrate binding domain AC028_04215 PF01370 NAD dependent epimerase/dehydratase family AC028_04220 PF00490 Delta-aminolevulinic acid dehydratase AC028_04240 PF05960 Bacterial protein of unknown function (DUF885) AC028_04245 PF12760 Transposase zinc-ribbon domain AC028_04245 PF12762 AC028_04245 AC028_04250 PF00326 Prolyl oligopeptidase family AC028_04250 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AC028_04255 PF00043 Glutathione S-transferase, C-terminal domain AC028_04255 PF02798 Glutathione S-transferase, N-terminal domain AC028_04260 PF00593 TonB dependent receptor AC028_04260 PF07715 TonB-dependent Receptor Plug Domain AC028_04265 PF07277 AC028_04265 AC028_04270 PF13621 Cupin-like domain AC028_04275 PF04820 Tryptophan halogenase AC028_04280 PF03544 Gram-negative bacterial TonB protein C-terminal AC028_04285 PF12679 AC028_04285 AC028_04290 PF00005 ABC transporter AC028_04295 PF00561 alpha/beta hydrolase fold AC028_04295 PF08386 TAP-like protein AC028_04300 PF01381 Helix-turn-helix AC028_04315 PF02583 Metal-sensitive transcriptional repressor AC028_04320 PF01545 Cation efflux family AC028_04325 PF00175 Oxidoreductase NAD-binding domain AC028_04325 PF00970 Oxidoreductase FAD-binding domain AC028_04330 PF00005 ABC transporter AC028_04335 PF01061 AC028_04335 AC028_04340 PF02558 Ketopantoate reductase PanE/ApbA AC028_04340 PF08546 Ketopantoate reductase PanE/ApbA C terminal AC028_04350 PF03061 Thioesterase superfamily AC028_04360 PF00085 Thioredoxin AC028_04365 PF12641 AC028_04365 AC028_04370 PF00268 Ribonucleotide reductase, small chain AC028_04380 PF00317 Ribonucleotide reductase, all-alpha domain AC028_04380 PF02867 Ribonucleotide reductase, barrel domain AC028_04385 PF04332 AC028_04385 AC028_04390 PF13302 Acetyltransferase (GNAT) domain AC028_04390 PF13380 CoA binding domain AC028_04390 PF13549 ATP-grasp domain AC028_04390 PF13607 Succinyl-CoA ligase like flavodoxin domain AC028_04395 PF00571 CBS domain AC028_04395 PF01769 Divalent cation transporter AC028_04395 PF03448 MgtE intracellular N domain AC028_04400 PF00194 Eukaryotic-type carbonic anhydrase AC028_04405 PF00999 Sodium/hydrogen exchanger family AC028_04405 PF02254 TrkA-N domain AC028_04410 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AC028_04410 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AC028_04415 PF00723 Glycosyl hydrolases family 15 AC028_04420 PF00023 Ankyrin repeat AC028_04420 PF12796 Ankyrin repeats (3 copies) AC028_04425 PF05166 YcgL domain AC028_04430 PF00109 Beta-ketoacyl synthase, N-terminal domain AC028_04430 PF02801 Beta-ketoacyl synthase, C-terminal domain AC028_04435 PF13723 AC028_04435 AC028_04440 PF00535 Glycosyl transferase family 2 AC028_04445 PF01494 FAD binding domain AC028_04450 PF01609 Transposase DDE domain AC028_04450 PF05598 AC028_04450 AC028_04455 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_04470 PF03176 MMPL family AC028_04490 PF03279 AC028_04490 AC028_04495 PF07977 FabA-like domain AC028_04500 PF01553 Acyltransferase AC028_04510 PF00550 Phosphopantetheine attachment site AC028_04515 PF04820 Tryptophan halogenase AC028_04530 PF00501 AMP-binding enzyme AC028_04535 PF00326 Prolyl oligopeptidase family AC028_04535 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AC028_04550 PF01218 Coproporphyrinogen III oxidase AC028_04555 PF00476 DNA polymerase family A AC028_04555 PF01367 5'-3' exonuclease, C-terminal SAM fold AC028_04555 PF01612 3'-5' exonuclease AC028_04555 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AC028_04560 PF11191 Protein of unknown function (DUF2782) AC028_04565 PF06812 AC028_04565 AC028_04570 PF05860 haemagglutination activity domain AC028_04575 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AC028_04575 PF08479 POTRA domain, ShlB-type AC028_04585 PF00069 Protein kinase domain AC028_04585 PF03781 Sulfatase-modifying factor enzyme 1 AC028_04590 PF13672 Protein phosphatase 2C AC028_04595 PF09867 Uncharacterized protein conserved in bacteria (DUF2094) AC028_04605 PF00691 OmpA family AC028_04605 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) AC028_04610 PF05936 AC028_04610 AC028_04615 PF00248 Aldo/keto reductase family AC028_04620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_04620 PF03466 LysR substrate binding domain AC028_04625 PF00498 FHA domain AC028_04635 PF05954 Phage late control gene D protein (GPD) AC028_04640 PF00515 Tetratricopeptide repeat AC028_04640 PF08241 Methyltransferase domain AC028_04645 PF05488 PAAR motif AC028_04650 PF00069 Protein kinase domain AC028_04650 PF13374 Tetratricopeptide repeat AC028_04650 PF13424 Tetratricopeptide repeat AC028_04655 PF07638 ECF sigma factor AC028_04660 PF04542 Sigma-70 region 2 AC028_04660 PF08281 Sigma-70, region 4 AC028_04665 PF04773 FecR protein AC028_04665 PF16220 AC028_04665 AC028_04665 PF16344 AC028_04665 AC028_04670 PF00593 TonB dependent receptor AC028_04670 PF07715 TonB-dependent Receptor Plug Domain AC028_04675 PF00328 Histidine phosphatase superfamily (branch 2) AC028_04680 PF01419 Jacalin-like lectin domain AC028_04690 PF13276 AC028_04690 AC028_04690 PF13683 AC028_04690 AC028_04695 PF01527 Transposase AC028_04700 PF12760 Transposase zinc-ribbon domain AC028_04700 PF12762 AC028_04700 AC028_04710 PF00665 Integrase core domain AC028_04710 PF13276 AC028_04710 AC028_04715 PF01527 Transposase AC028_04720 PF12760 Transposase zinc-ribbon domain AC028_04720 PF12762 AC028_04720 AC028_04725 PF10566 Glycoside hydrolase 97 AC028_04725 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AC028_04740 PF08845 AC028_04740 AC028_04745 PF13276 AC028_04745 AC028_04745 PF13683 AC028_04745 AC028_04750 PF01527 Transposase AC028_04755 PF01609 Transposase DDE domain AC028_04755 PF05598 AC028_04755 AC028_04765 PF00795 Carbon-nitrogen hydrolase AC028_04775 PF00128 Alpha amylase, catalytic domain AC028_04775 PF11896 Domain of unknown function (DUF3416) AC028_04780 PF00128 Alpha amylase, catalytic domain AC028_04780 PF16657 AC028_04780 AC028_04785 PF00128 Alpha amylase, catalytic domain AC028_04785 PF02806 Alpha amylase, C-terminal all-beta domain AC028_04785 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AC028_04790 PF12850 Calcineurin-like phosphoesterase superfamily domain AC028_04795 PF00248 Aldo/keto reductase family AC028_04800 PF00135 Carboxylesterase family AC028_04805 PF07859 alpha/beta hydrolase fold AC028_04815 PF03480 Bacterial extracellular solute-binding protein, family 7 AC028_04820 PF04290 AC028_04820 AC028_04825 PF06808 AC028_04825 AC028_04830 PF04616 Glycosyl hydrolases family 43 AC028_04835 PF00356 Bacterial regulatory proteins, lacI family AC028_04835 PF13377 Periplasmic binding protein-like domain AC028_04840 PF04962 KduI/IolB family AC028_04845 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_04850 PF02502 Ribose/Galactose Isomerase AC028_04850 PF12408 Ribose-5-phosphate isomerase AC028_04855 PF07883 Cupin domain AC028_04855 PF13472 GDSL-like Lipase/Acylhydrolase family AC028_04860 PF14300 Domain of unknown function (DUF4375) AC028_04865 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AC028_04870 PF01037 AsnC family AC028_04870 PF13412 Winged helix-turn-helix DNA-binding AC028_04875 PF00593 TonB dependent receptor AC028_04875 PF07715 TonB-dependent Receptor Plug Domain AC028_04880 PF01734 Patatin-like phospholipase AC028_04885 PF01987 Mitochondrial biogenesis AIM24 AC028_04890 PF00005 ABC transporter AC028_04895 PF00487 AC028_04895 AC028_04900 PF13202 EF hand AC028_04905 PF00005 ABC transporter AC028_04910 PF00528 Binding-protein-dependent transport system inner membrane component AC028_04910 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AC028_04915 PF00266 Aminotransferase class-V AC028_04920 PF03781 Sulfatase-modifying factor enzyme 1 AC028_04920 PF12867 DinB superfamily AC028_04925 PF10017 AC028_04925 AC028_04930 PF11625 Protein of unknown function (DUF3253) AC028_04935 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AC028_04950 PF03547 AC028_04950 AC028_04955 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AC028_04960 PF00300 Histidine phosphatase superfamily (branch 1) AC028_04965 PF04264 YceI-like domain AC028_04970 PF13091 PLD-like domain AC028_04975 PF03061 Thioesterase superfamily AC028_04980 PF01553 Acyltransferase AC028_04985 PF12697 Alpha/beta hydrolase family AC028_04995 PF13432 Tetratricopeptide repeat AC028_05000 PF01161 Phosphatidylethanolamine-binding protein AC028_05005 PF00107 Zinc-binding dehydrogenase AC028_05005 PF08240 Alcohol dehydrogenase GroES-like domain AC028_05010 PF03724 META domain AC028_05010 PF14302 AC028_05010 AC028_05015 PF02673 AC028_05015 AC028_05020 PF00120 Glutamine synthetase, catalytic domain AC028_05020 PF03951 Glutamine synthetase, beta-Grasp domain AC028_05025 PF00543 Nitrogen regulatory protein P-II AC028_05030 PF00909 Ammonium Transporter Family AC028_05035 PF00512 His Kinase A (phospho-acceptor) domain AC028_05035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_05040 PF00072 Response regulator receiver domain AC028_05040 PF00158 Sigma-54 interaction domain AC028_05040 PF02954 Bacterial regulatory protein, Fis family AC028_05045 PF00080 Copper/zinc superoxide dismutase (SODC) AC028_05050 PF00080 Copper/zinc superoxide dismutase (SODC) AC028_05055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AC028_05065 PF00108 Thiolase, N-terminal domain AC028_05065 PF02803 Thiolase, C-terminal domain AC028_05070 PF07219 AC028_05070 AC028_05075 PF04375 AC028_05075 AC028_05080 PF02602 Uroporphyrinogen-III synthase HemD AC028_05085 PF01755 AC028_05085 AC028_05090 PF09500 Putative thioesterase (yiiD_Cterm) AC028_05100 PF00581 Rhodanese-like domain AC028_05105 PF02556 Preprotein translocase subunit SecB AC028_05110 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AC028_05110 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AC028_05125 PF12760 Transposase zinc-ribbon domain AC028_05125 PF12762 AC028_05125 AC028_05130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AC028_05135 PF00512 His Kinase A (phospho-acceptor) domain AC028_05135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_05140 PF00072 Response regulator receiver domain AC028_05140 PF00158 Sigma-54 interaction domain AC028_05140 PF02954 Bacterial regulatory protein, Fis family AC028_05155 PF07690 Major Facilitator Superfamily AC028_05160 PF00588 SpoU rRNA Methylase family AC028_05170 PF13698 AC028_05170 AC028_05175 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AC028_05175 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AC028_05180 PF02661 Fic/DOC family AC028_05180 PF13784 Fic/DOC family N-terminal AC028_05185 PF00561 alpha/beta hydrolase fold AC028_05190 PF03692 AC028_05190 AC028_05195 PF00501 AMP-binding enzyme AC028_05200 PF00486 Transcriptional regulatory protein, C terminal AC028_05205 PF00144 Beta-lactamase AC028_05210 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AC028_05215 PF07043 AC028_05215 AC028_05230 PF02036 SCP-2 sterol transfer family AC028_05235 PF03109 AC028_05235 AC028_05240 PF07883 Cupin domain AC028_05245 PF00849 RNA pseudouridylate synthase AC028_05250 PF09832 Uncharacterized protein conserved in bacteria (DUF2059) AC028_05255 PF00472 RF-1 domain AC028_05260 PF01553 Acyltransferase AC028_05265 PF01112 Asparaginase AC028_05270 PF01432 Peptidase family M3 AC028_05275 PF00106 short chain dehydrogenase AC028_05280 PF12706 Beta-lactamase superfamily domain AC028_05290 PF00440 Bacterial regulatory proteins, tetR family AC028_05290 PF14246 AefR-like transcriptional repressor, C-terminal region AC028_05295 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AC028_05300 PF12833 Helix-turn-helix domain AC028_05305 PF00999 Sodium/hydrogen exchanger family AC028_05310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_05310 PF03466 LysR substrate binding domain AC028_05315 PF01274 Malate synthase AC028_05320 PF00463 Isocitrate lyase family AC028_05325 PF00027 Cyclic nucleotide-binding domain AC028_05325 PF00990 GGDEF domain AC028_05330 PF14559 Tetratricopeptide repeat AC028_05340 PF00881 Nitroreductase family AC028_05345 PF00326 Prolyl oligopeptidase family AC028_05350 PF13276 AC028_05350 AC028_05350 PF13683 AC028_05350 AC028_05355 PF01527 Transposase AC028_05365 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AC028_05365 PF00364 Biotin-requiring enzyme AC028_05365 PF02785 Biotin carboxylase C-terminal domain AC028_05365 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AC028_05370 PF01039 Carboxyl transferase domain AC028_05375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_05375 PF02770 Acyl-CoA dehydrogenase, middle domain AC028_05375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_05380 PF00440 Bacterial regulatory proteins, tetR family AC028_05390 PF08808 AC028_05390 AC028_05395 PF11804 AC028_05395 AC028_05400 PF03929 AC028_05400 AC028_05405 PF12365 AC028_05405 AC028_05415 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AC028_05420 PF03372 Endonuclease/Exonuclease/phosphatase family AC028_05425 PF03203 AC028_05425 AC028_05430 PF02492 CobW/HypB/UreG, nucleotide-binding domain AC028_05430 PF07683 Cobalamin synthesis protein cobW C-terminal domain AC028_05450 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AC028_05455 PF03969 AFG1-like ATPase AC028_05460 PF01047 MarR family AC028_05465 PF02566 OsmC-like protein AC028_05475 PF12697 Alpha/beta hydrolase family AC028_05495 PF00107 Zinc-binding dehydrogenase AC028_05495 PF16884 AC028_05495 AC028_05500 PF00248 Aldo/keto reductase family AC028_05510 PF00849 RNA pseudouridylate synthase AC028_05515 PF00593 TonB dependent receptor AC028_05515 PF07715 TonB-dependent Receptor Plug Domain AC028_05515 PF13620 Carboxypeptidase regulatory-like domain AC028_05525 PF00271 Helicase conserved C-terminal domain AC028_05525 PF04408 Helicase associated domain (HA2) AC028_05525 PF08482 AC028_05525 AC028_05530 PF07308 AC028_05530 AC028_05535 PF00576 HIUase/Transthyretin family AC028_05540 PF13738 Pyridine nucleotide-disulphide oxidoreductase AC028_05545 PF09349 OHCU decarboxylase AC028_05550 PF11533 Protein of unknown function (DUF3225) AC028_05555 PF01522 Polysaccharide deacetylase AC028_05560 PF00266 Aminotransferase class-V AC028_05565 PF01546 Peptidase family M20/M25/M40 AC028_05565 PF07687 Peptidase dimerisation domain AC028_05570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_05570 PF03466 LysR substrate binding domain AC028_05575 PF00561 alpha/beta hydrolase fold AC028_05585 PF01019 Gamma-glutamyltranspeptidase AC028_05590 PF01425 Amidase AC028_05595 PF01156 Inosine-uridine preferring nucleoside hydrolase AC028_05600 PF00962 Adenosine/AMP deaminase AC028_05605 PF00860 Permease family AC028_05615 PF00111 2Fe-2S iron-sulfur cluster binding domain AC028_05615 PF00970 Oxidoreductase FAD-binding domain AC028_05620 PF00355 Rieske [2Fe-2S] domain AC028_05625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_05625 PF03466 LysR substrate binding domain AC028_05630 PF01026 TatD related DNase AC028_05640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_05640 PF03466 LysR substrate binding domain AC028_05645 PF07690 Major Facilitator Superfamily AC028_05650 PF13411 MerR HTH family regulatory protein AC028_05655 PF12697 Alpha/beta hydrolase family AC028_05660 PF02146 Sir2 family AC028_05665 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AC028_05670 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AC028_05670 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AC028_05680 PF00551 Formyl transferase AC028_05680 PF01842 ACT domain AC028_05685 PF00072 Response regulator receiver domain AC028_05685 PF00486 Transcriptional regulatory protein, C terminal AC028_05690 PF00512 His Kinase A (phospho-acceptor) domain AC028_05690 PF00672 HAMP domain AC028_05690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_05695 PF16576 AC028_05695 AC028_05700 PF00873 AcrB/AcrD/AcrF family AC028_05705 PF02321 Outer membrane efflux protein AC028_05715 PF02219 Methylenetetrahydrofolate reductase AC028_05720 PF02677 AC028_05720 AC028_05725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_05725 PF03466 LysR substrate binding domain AC028_05730 PF03358 NADPH-dependent FMN reductase AC028_05735 PF08908 AC028_05735 AC028_05740 PF01717 Cobalamin-independent synthase, Catalytic domain AC028_05745 PF03812 AC028_05745 AC028_05750 PF07396 Phosphate-selective porin O and P AC028_05765 PF05368 NmrA-like family AC028_05770 PF01638 HxlR-like helix-turn-helix AC028_05790 PF01124 MAPEG family AC028_05805 PF00920 Dehydratase family AC028_05810 PF00150 Cellulase (glycosyl hydrolase family 5) AC028_05825 PF00132 Bacterial transferase hexapeptide (six repeats) AC028_05835 PF07690 Major Facilitator Superfamily AC028_05840 PF11871 AC028_05840 AC028_05840 PF13487 HD domain AC028_05845 PF12802 MarR family AC028_05850 PF13557 AC028_05850 AC028_05855 PF00106 short chain dehydrogenase AC028_05855 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_05860 PF00171 Aldehyde dehydrogenase family AC028_05865 PF02311 AraC-like ligand binding domain AC028_05865 PF12833 Helix-turn-helix domain AC028_05870 PF01494 FAD binding domain AC028_05875 PF12680 SnoaL-like domain AC028_05880 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AC028_05880 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AC028_05885 PF00230 Major intrinsic protein AC028_05890 PF01266 FAD dependent oxidoreductase AC028_05890 PF16901 AC028_05890 AC028_05895 PF00455 AC028_05895 AC028_05895 PF08220 DeoR-like helix-turn-helix domain AC028_05900 PF00111 2Fe-2S iron-sulfur cluster binding domain AC028_05900 PF00175 Oxidoreductase NAD-binding domain AC028_05900 PF00970 Oxidoreductase FAD-binding domain AC028_05905 PF00355 Rieske [2Fe-2S] domain AC028_05910 PF01144 Coenzyme A transferase AC028_05915 PF01144 Coenzyme A transferase AC028_05920 PF00108 Thiolase, N-terminal domain AC028_05920 PF02803 Thiolase, C-terminal domain AC028_05925 PF00775 Dioxygenase AC028_05925 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AC028_05930 PF00775 Dioxygenase AC028_05935 PF00206 Lyase AC028_05935 PF10397 Adenylosuccinate lyase C-terminus AC028_05940 PF00561 alpha/beta hydrolase fold AC028_05945 PF02627 Carboxymuconolactone decarboxylase family AC028_05950 PF12146 Putative lysophospholipase AC028_05955 PF01614 Bacterial transcriptional regulator AC028_05955 PF09339 IclR helix-turn-helix domain AC028_05960 PF01163 RIO1 family AC028_05965 PF07859 alpha/beta hydrolase fold AC028_05975 PF10677 AC028_05975 AC028_05980 PF01134 Glucose inhibited division protein A AC028_05980 PF13932 GidA associated domain 3 AC028_05990 PF00291 Pyridoxal-phosphate dependent enzyme AC028_05995 PF02698 DUF218 domain AC028_06000 PF12680 SnoaL-like domain AC028_06005 PF05118 Aspartyl/Asparaginyl beta-hydroxylase AC028_06010 PF08241 Methyltransferase domain AC028_06015 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_06020 PF12697 Alpha/beta hydrolase family AC028_06030 PF00155 Aminotransferase class I and II AC028_06035 PF04055 Radical SAM superfamily AC028_06035 PF06968 Biotin and Thiamin Synthesis associated domain AC028_06040 PF00156 Phosphoribosyl transferase domain AC028_06045 PF01040 UbiA prenyltransferase family AC028_06060 PF12760 Transposase zinc-ribbon domain AC028_06060 PF12762 AC028_06060 AC028_06065 PF12760 Transposase zinc-ribbon domain AC028_06065 PF12762 AC028_06065 AC028_06070 PF12760 Transposase zinc-ribbon domain AC028_06070 PF12762 AC028_06070 AC028_06075 PF00072 Response regulator receiver domain AC028_06080 PF01527 Transposase AC028_06085 PF13276 AC028_06085 AC028_06085 PF13683 AC028_06085 AC028_06095 PF04325 Protein of unknown function (DUF465) AC028_06100 PF00107 Zinc-binding dehydrogenase AC028_06100 PF08240 Alcohol dehydrogenase GroES-like domain AC028_06105 PF01553 Acyltransferase AC028_06115 PF00356 Bacterial regulatory proteins, lacI family AC028_06115 PF13377 Periplasmic binding protein-like domain AC028_06120 PF00593 TonB dependent receptor AC028_06130 PF00593 TonB dependent receptor AC028_06135 PF04820 Tryptophan halogenase AC028_06140 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AC028_06145 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AC028_06150 PF04337 Protein of unknown function, DUF480 AC028_06155 PF14094 AC028_06155 AC028_06160 PF13302 Acetyltransferase (GNAT) domain AC028_06165 PF00580 UvrD/REP helicase N-terminal domain AC028_06165 PF13361 UvrD-like helicase C-terminal domain AC028_06170 PF00265 Thymidine kinase AC028_06175 PF00512 His Kinase A (phospho-acceptor) domain AC028_06175 PF01590 GAF domain AC028_06180 PF04349 Periplasmic glucan biosynthesis protein, MdoG AC028_06185 PF14315 AC028_06185 AC028_06190 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AC028_06190 PF06827 Zinc finger found in FPG and IleRS AC028_06190 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AC028_06220 PF03594 AC028_06220 AC028_06225 PF00360 Phytochrome region AC028_06225 PF01590 GAF domain AC028_06225 PF08446 PAS fold AC028_06225 PF08448 PAS fold AC028_06230 PF01126 Heme oxygenase AC028_06235 PF07690 Major Facilitator Superfamily AC028_06240 PF01263 Aldose 1-epimerase AC028_06240 PF01471 Putative peptidoglycan binding domain AC028_06240 PF13406 Transglycosylase SLT domain AC028_06255 PF01925 AC028_06255 AC028_06260 PF13555 P-loop containing region of AAA domain AC028_06260 PF13558 Putative exonuclease SbcCD, C subunit AC028_06265 PF13835 AC028_06265 AC028_06270 PF11855 AC028_06270 AC028_06275 PF01227 GTP cyclohydrolase I AC028_06280 PF12802 MarR family AC028_06285 PF07869 AC028_06285 AC028_06290 PF13437 HlyD family secretion protein AC028_06290 PF13533 Biotin-lipoyl like AC028_06295 PF02321 Outer membrane efflux protein AC028_06300 PF04632 AC028_06300 AC028_06305 PF00083 Sugar (and other) transporter AC028_06315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_06315 PF03466 LysR substrate binding domain AC028_06320 PF00106 short chain dehydrogenase AC028_06330 PF13091 PLD-like domain AC028_06345 PF05016 Plasmid stabilisation system protein AC028_06370 PF12760 Transposase zinc-ribbon domain AC028_06370 PF12762 AC028_06370 AC028_06385 PF12760 Transposase zinc-ribbon domain AC028_06385 PF12762 AC028_06385 AC028_06390 PF12760 Transposase zinc-ribbon domain AC028_06390 PF12762 AC028_06390 AC028_06395 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AC028_06395 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AC028_06405 PF07080 Protein of unknown function (DUF1348) AC028_06410 PF00440 Bacterial regulatory proteins, tetR family AC028_06415 PF00440 Bacterial regulatory proteins, tetR family AC028_06420 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_06435 PF05299 M61 glycyl aminopeptidase AC028_06445 PF01156 Inosine-uridine preferring nucleoside hydrolase AC028_06450 PF13245 Part of AAA domain AC028_06450 PF13538 UvrD-like helicase C-terminal domain AC028_06455 PF00580 UvrD/REP helicase N-terminal domain AC028_06455 PF12705 PD-(D/E)XK nuclease superfamily AC028_06455 PF13361 UvrD-like helicase C-terminal domain AC028_06460 PF04257 Exodeoxyribonuclease V, gamma subunit AC028_06465 PF03160 Calx-beta domain AC028_06465 PF03797 Autotransporter beta-domain AC028_06465 PF05345 Putative Ig domain AC028_06470 PF07484 Phage Tail Collar Domain AC028_06475 PF07484 Phage Tail Collar Domain AC028_06480 PF07484 Phage Tail Collar Domain AC028_06485 PF13673 Acetyltransferase (GNAT) domain AC028_06495 PF00005 ABC transporter AC028_06500 PF02405 AC028_06500 AC028_06505 PF02470 AC028_06505 AC028_06510 PF05494 Toluene tolerance, Ttg2 AC028_06515 PF13466 STAS domain AC028_06520 PF04333 AC028_06520 AC028_06530 PF00255 Glutathione peroxidase AC028_06540 PF02646 AC028_06540 AC028_06550 PF13410 Glutathione S-transferase, C-terminal domain AC028_06550 PF13417 Glutathione S-transferase, N-terminal domain AC028_06560 PF13520 Amino acid permease AC028_06575 PF05651 AC028_06575 AC028_06575 PF13556 PucR C-terminal helix-turn-helix domain AC028_06580 PF02595 Glycerate kinase family AC028_06585 PF07690 Major Facilitator Superfamily AC028_06590 PF01244 Membrane dipeptidase (Peptidase family M19) AC028_06600 PF10672 S-adenosylmethionine-dependent methyltransferase AC028_06605 PF03741 AC028_06605 AC028_06610 PF01694 Rhomboid family AC028_06615 PF03009 Glycerophosphoryl diester phosphodiesterase family AC028_06620 PF00593 TonB dependent receptor AC028_06620 PF07715 TonB-dependent Receptor Plug Domain AC028_06625 PF01569 PAP2 superfamily AC028_06630 PF01926 50S ribosome-binding GTPase AC028_06630 PF10396 GTP-binding protein TrmE N-terminus AC028_06630 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE AC028_06640 PF02096 60Kd inner membrane protein AC028_06640 PF14849 YidC periplasmic domain AC028_06645 PF00825 Ribonuclease P AC028_06650 PF00468 Ribosomal protein L34 AC028_06655 PF00308 Bacterial dnaA protein AC028_06655 PF08299 Bacterial dnaA protein helix-turn-helix AC028_06655 PF11638 DnaA N-terminal domain AC028_06660 PF00712 DNA polymerase III beta subunit, N-terminal domain AC028_06660 PF02767 DNA polymerase III beta subunit, central domain AC028_06660 PF02768 DNA polymerase III beta subunit, C-terminal domain AC028_06665 PF02463 RecF/RecN/SMC N terminal domain AC028_06670 PF00204 DNA gyrase B AC028_06670 PF00986 DNA gyrase B subunit, carboxyl terminus AC028_06670 PF01751 Toprim domain AC028_06670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_06675 PF02517 CAAX protease self-immunity AC028_06680 PF01435 Peptidase family M48 AC028_06685 PF09295 ChAPs (Chs5p-Arf1p-binding proteins) AC028_06690 PF03544 Gram-negative bacterial TonB protein C-terminal AC028_06695 PF01618 AC028_06695 AC028_06700 PF02472 Biopolymer transport protein ExbD/TolR AC028_06705 PF02472 Biopolymer transport protein ExbD/TolR AC028_06710 PF02472 Biopolymer transport protein ExbD/TolR AC028_06715 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AC028_06725 PF13091 PLD-like domain AC028_06735 PF07045 Protein of unknown function (DUF1330) AC028_06740 PF04055 Radical SAM superfamily AC028_06755 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AC028_06760 PF03572 Peptidase family S41 AC028_06760 PF13180 PDZ domain AC028_06765 PF01551 Peptidase family M23 AC028_06775 PF02225 PA domain AC028_06775 PF04389 Peptidase family M28 AC028_06780 PF13670 AC028_06780 AC028_06785 PF00150 Cellulase (glycosyl hydrolase family 5) AC028_06790 PF00150 Cellulase (glycosyl hydrolase family 5) AC028_06800 PF00150 Cellulase (glycosyl hydrolase family 5) AC028_06805 PF00107 Zinc-binding dehydrogenase AC028_06805 PF08240 Alcohol dehydrogenase GroES-like domain AC028_06810 PF12760 Transposase zinc-ribbon domain AC028_06810 PF12762 AC028_06810 AC028_06820 PF00082 Subtilase family AC028_06820 PF09286 Pro-kumamolisin, activation domain AC028_06830 PF09916 AC028_06830 AC028_06835 PF06258 AC028_06835 AC028_06840 PF00881 Nitroreductase family AC028_06845 PF04264 YceI-like domain AC028_06855 PF00328 Histidine phosphatase superfamily (branch 2) AC028_06860 PF04954 Siderophore-interacting protein AC028_06860 PF08021 Siderophore-interacting FAD-binding domain AC028_06865 PF03551 Transcriptional regulator PadR-like family AC028_06870 PF16957 AC028_06870 AC028_06875 PF06857 AC028_06875 AC028_06880 PF01039 Carboxyl transferase domain AC028_06885 PF06833 Malonate decarboxylase gamma subunit (MdcE) AC028_06890 PF10620 AC028_06890 AC028_06895 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AC028_06900 PF00698 Acyl transferase domain AC028_06905 PF03600 Citrate transporter AC028_06905 PF07158 AC028_06905 AC028_06910 PF00392 Bacterial regulatory proteins, gntR family AC028_06910 PF07729 FCD domain AC028_06915 PF13419 Haloacid dehalogenase-like hydrolase AC028_06920 PF01740 STAS domain AC028_06925 PF13581 Histidine kinase-like ATPase domain AC028_06930 PF00672 HAMP domain AC028_06930 PF02743 Cache domain AC028_06930 PF07228 Stage II sporulation protein E (SpoIIE) AC028_06940 PF01764 Lipase (class 3) AC028_06945 PF07745 Glycosyl hydrolase family 53 AC028_06950 PF00456 Transketolase, thiamine diphosphate binding domain AC028_06955 PF12760 Transposase zinc-ribbon domain AC028_06955 PF12762 AC028_06955 AC028_06965 PF12760 Transposase zinc-ribbon domain AC028_06965 PF12762 AC028_06965 AC028_06970 PF00437 Type II/IV secretion system protein AC028_06970 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AC028_06975 PF02091 Glycyl-tRNA synthetase alpha subunit AC028_06980 PF02092 AC028_06980 AC028_06980 PF05746 DALR anticodon binding domain AC028_06990 PF01609 Transposase DDE domain AC028_06990 PF05598 AC028_06990 AC028_07005 PF12760 Transposase zinc-ribbon domain AC028_07005 PF12762 AC028_07005 AC028_07015 PF00665 Integrase core domain AC028_07015 PF13276 AC028_07015 AC028_07020 PF01527 Transposase AC028_07030 PF01609 Transposase DDE domain AC028_07030 PF05598 AC028_07030 AC028_07045 PF01103 Surface antigen AC028_07045 PF07244 Surface antigen variable number repeat AC028_07045 PF17243 AC028_07045 AC028_07050 PF04357 AC028_07050 AC028_07070 PF13360 PQQ-like domain AC028_07075 PF01202 Shikimate kinase AC028_07080 PF13347 MFS/sugar transport protein AC028_07085 PF06165 Glycosyltransferase family 36 AC028_07085 PF17167 AC028_07085 AC028_07090 PF15979 AC028_07090 AC028_07095 PF00072 Response regulator receiver domain AC028_07095 PF00512 His Kinase A (phospho-acceptor) domain AC028_07095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_07095 PF12860 AC028_07095 AC028_07100 PF02659 AC028_07100 AC028_07105 PF01614 Bacterial transcriptional regulator AC028_07105 PF09339 IclR helix-turn-helix domain AC028_07110 PF07690 Major Facilitator Superfamily AC028_07115 PF05336 Domain of unknown function (DUF718) AC028_07120 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AC028_07120 PF13378 Enolase C-terminal domain-like AC028_07125 PF01557 Fumarylacetoacetate (FAA) hydrolase family AC028_07130 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_07135 PF04909 Amidohydrolase AC028_07140 PF00248 Aldo/keto reductase family AC028_07150 PF04616 Glycosyl hydrolases family 43 AC028_07160 PF00578 AhpC/TSA family AC028_07170 PF14415 Domain of unknown function (DUF4424) AC028_07175 PF00072 Response regulator receiver domain AC028_07175 PF00196 Bacterial regulatory proteins, luxR family AC028_07180 PF00501 AMP-binding enzyme AC028_07180 PF13193 AMP-binding enzyme C-terminal domain AC028_07180 PF16177 AC028_07180 AC028_07190 PF04341 AC028_07190 AC028_07195 PF00474 Sodium:solute symporter family AC028_07200 PF03009 Glycerophosphoryl diester phosphodiesterase family AC028_07205 PF13616 PPIC-type PPIASE domain AC028_07215 PF00480 ROK family AC028_07220 PF03372 Endonuclease/Exonuclease/phosphatase family AC028_07225 PF04828 Glutathione-dependent formaldehyde-activating enzyme AC028_07230 PF04226 AC028_07230 AC028_07240 PF01648 4'-phosphopantetheinyl transferase superfamily AC028_07245 PF09423 PhoD-like phosphatase AC028_07245 PF16655 AC028_07245 AC028_07250 PF09423 PhoD-like phosphatase AC028_07250 PF16655 AC028_07250 AC028_07255 PF02527 rRNA small subunit methyltransferase G AC028_07260 PF05960 Bacterial protein of unknown function (DUF885) AC028_07270 PF02321 Outer membrane efflux protein AC028_07275 PF16576 AC028_07275 AC028_07280 PF00873 AcrB/AcrD/AcrF family AC028_07285 PF00830 Ribosomal L28 family AC028_07290 PF00471 Ribosomal protein L33 AC028_07295 PF04909 Amidohydrolase AC028_07300 PF04303 PrpF protein AC028_07305 PF03737 Demethylmenaquinone methyltransferase AC028_07310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_07310 PF03466 LysR substrate binding domain AC028_07315 PF13091 PLD-like domain AC028_07315 PF13396 AC028_07315 AC028_07320 PF13454 FAD-NAD(P)-binding AC028_07325 PF00580 UvrD/REP helicase N-terminal domain AC028_07325 PF13361 UvrD-like helicase C-terminal domain AC028_07335 PF00132 Bacterial transferase hexapeptide (six repeats) AC028_07335 PF12464 Maltose acetyltransferase AC028_07340 PF00582 Universal stress protein family AC028_07345 PF12833 Helix-turn-helix domain AC028_07350 PF05591 AC028_07350 AC028_07355 PF05943 AC028_07355 AC028_07360 PF05638 Protein of unknown function (DUF796) AC028_07365 PF07024 ImpE protein AC028_07370 PF04965 Gene 25-like lysozyme AC028_07375 PF05947 AC028_07375 AC028_07380 PF06996 AC028_07380 AC028_07390 PF12760 Transposase zinc-ribbon domain AC028_07390 PF12762 AC028_07390 AC028_07395 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AC028_07400 PF00924 Mechanosensitive ion channel AC028_07400 PF12607 AC028_07400 AC028_07405 PF00884 Sulfatase AC028_07410 PF03109 AC028_07410 AC028_07415 PF05661 AC028_07415 AC028_07420 PF00990 GGDEF domain AC028_07425 PF00534 Glycosyl transferases group 1 AC028_07425 PF08323 Starch synthase catalytic domain AC028_07430 PF00128 Alpha amylase, catalytic domain AC028_07430 PF02806 Alpha amylase, C-terminal all-beta domain AC028_07430 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AC028_07435 PF00128 Alpha amylase, catalytic domain AC028_07435 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AC028_07435 PF11941 Domain of unknown function (DUF3459) AC028_07440 PF02446 4-alpha-glucanotransferase AC028_07445 PF00128 Alpha amylase, catalytic domain AC028_07450 PF11154 AC028_07450 AC028_07455 PF00128 Alpha amylase, catalytic domain AC028_07455 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AC028_07460 PF13460 NADH(P)-binding AC028_07465 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_07470 PF00890 FAD binding domain AC028_07470 PF13454 FAD-NAD(P)-binding AC028_07480 PF06903 AC028_07480 AC028_07485 PF02321 Outer membrane efflux protein AC028_07490 PF00440 Bacterial regulatory proteins, tetR family AC028_07495 PF16576 AC028_07495 AC028_07500 PF00873 AcrB/AcrD/AcrF family AC028_07505 PF00106 short chain dehydrogenase AC028_07515 PF00270 DEAD/DEAH box helicase AC028_07515 PF00271 Helicase conserved C-terminal domain AC028_07520 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AC028_07520 PF00364 Biotin-requiring enzyme AC028_07520 PF02817 e3 binding domain AC028_07530 PF02779 Transketolase, pyrimidine binding domain AC028_07530 PF02780 Transketolase, C-terminal domain AC028_07535 PF00676 Dehydrogenase E1 component AC028_07540 PF00932 Lamin Tail Domain AC028_07540 PF03160 Calx-beta domain AC028_07540 PF03372 Endonuclease/Exonuclease/phosphatase family AC028_07545 PF03301 Tryptophan 2,3-dioxygenase AC028_07550 PF00854 POT family AC028_07555 PF13899 Thioredoxin-like AC028_07560 PF12802 MarR family AC028_07565 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AC028_07565 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal AC028_07570 PF04209 homogentisate 1,2-dioxygenase AC028_07585 PF03334 AC028_07585 AC028_07590 PF04066 AC028_07590 AC028_07595 PF01899 AC028_07595 AC028_07600 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AC028_07605 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AC028_07610 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AC028_07610 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AC028_07610 PF04039 AC028_07610 AC028_07610 PF13244 AC028_07610 AC028_07615 PF01370 NAD dependent epimerase/dehydratase family AC028_07620 PF06127 AC028_07620 AC028_07635 PF01551 Peptidase family M23 AC028_07645 PF01259 SAICAR synthetase AC028_07650 PF00226 DnaJ domain AC028_07660 PF00834 Ribulose-phosphate 3 epimerase family AC028_07665 PF00583 Acetyltransferase (GNAT) family AC028_07670 PF00781 Diacylglycerol kinase catalytic domain AC028_07675 PF00425 chorismate binding enzyme AC028_07675 PF04715 Anthranilate synthase component I, N terminal region AC028_07680 PF01212 Beta-eliminating lyase AC028_07685 PF00117 Glutamine amidotransferase class-I AC028_07690 PF01613 Flavin reductase like domain AC028_07695 PF00591 Glycosyl transferase family, a/b domain AC028_07695 PF02885 Glycosyl transferase family, helical bundle domain AC028_07700 PF00218 Indole-3-glycerol phosphate synthase AC028_07705 PF12710 haloacid dehalogenase-like hydrolase AC028_07710 PF00027 Cyclic nucleotide-binding domain AC028_07710 PF00325 Bacterial regulatory proteins, crp family AC028_07715 PF02675 S-adenosylmethionine decarboxylase AC028_07720 PF00893 Small Multidrug Resistance protein AC028_07725 PF03232 AC028_07725 AC028_07730 PF00572 Ribosomal protein L13 AC028_07735 PF00380 Ribosomal protein S9/S16 AC028_07750 PF00293 NUDIX domain AC028_07755 PF04324 BFD-like [2Fe-2S] binding domain AC028_07760 PF00210 Ferritin-like domain AC028_07765 PF00072 Response regulator receiver domain AC028_07765 PF00512 His Kinase A (phospho-acceptor) domain AC028_07765 PF01627 Hpt domain AC028_07765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_07770 PF00072 Response regulator receiver domain AC028_07770 PF00563 EAL domain AC028_07770 PF00990 GGDEF domain AC028_07775 PF13548 AC028_07775 AC028_07785 PF04519 AC028_07785 AC028_07790 PF01521 Iron-sulphur cluster biosynthesis AC028_07795 PF03583 Secretory lipase AC028_07800 PF00293 NUDIX domain AC028_07800 PF09297 NADH pyrophosphatase zinc ribbon domain AC028_07805 PF03186 AC028_07805 AC028_07810 PF10825 AC028_07810 AC028_07815 PF04505 AC028_07815 AC028_07820 PF01553 Acyltransferase AC028_07820 PF07690 Major Facilitator Superfamily AC028_07825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_07825 PF03466 LysR substrate binding domain AC028_07830 PF07690 Major Facilitator Superfamily AC028_07835 PF12805 AC028_07835 AC028_07835 PF13515 AC028_07835 AC028_07845 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AC028_07845 PF02843 Phosphoribosylglycinamide synthetase, C domain AC028_07845 PF02844 Phosphoribosylglycinamide synthetase, N domain AC028_07855 PF01808 AICARFT/IMPCHase bienzyme AC028_07855 PF02142 MGS-like domain AC028_07860 PF01066 CDP-alcohol phosphatidyltransferase AC028_07865 PF12146 Putative lysophospholipase AC028_07865 PF12147 AC028_07865 AC028_07870 PF00782 Dual specificity phosphatase, catalytic domain AC028_07870 PF14378 AC028_07870 AC028_07895 PF01148 Cytidylyltransferase family AC028_07900 PF02954 Bacterial regulatory protein, Fis family AC028_07905 PF11906 AC028_07905 AC028_07915 PF01381 Helix-turn-helix AC028_07925 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AC028_07940 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AC028_07940 PF02785 Biotin carboxylase C-terminal domain AC028_07940 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AC028_07945 PF05635 23S rRNA-intervening sequence protein AC028_07950 PF00364 Biotin-requiring enzyme AC028_07955 PF01220 Dehydroquinase class II AC028_07960 PF02683 AC028_07960 AC028_07960 PF11412 Disulphide bond corrector protein DsbC AC028_07960 PF13899 Thioredoxin-like AC028_07965 PF03091 CutA1 divalent ion tolerance protein AC028_07970 PF04231 Endonuclease I AC028_07970 PF13205 Bacterial Ig-like domain AC028_07975 PF00166 Chaperonin 10 Kd subunit AC028_07980 PF00118 TCP-1/cpn60 chaperonin family AC028_07990 PF00593 TonB dependent receptor AC028_07990 PF07715 TonB-dependent Receptor Plug Domain AC028_07995 PF00793 DAHP synthetase I family AC028_08025 PF03710 Glutamate-ammonia ligase adenylyltransferase AC028_08025 PF08335 GlnD PII-uridylyltransferase AC028_08030 PF02592 AC028_08030 AC028_08040 PF12760 Transposase zinc-ribbon domain AC028_08040 PF12762 AC028_08040 AC028_08050 PF12762 AC028_08050 AC028_08060 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_08060 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AC028_08065 PF00310 Glutamine amidotransferases class-II AC028_08065 PF01493 GXGXG motif AC028_08065 PF01645 Conserved region in glutamate synthase AC028_08065 PF04898 Glutamate synthase central domain AC028_08070 PF11720 Peptidase inhibitor I78 family AC028_08075 PF01028 Eukaryotic DNA topoisomerase I, catalytic core AC028_08085 PF03965 Penicillinase repressor AC028_08090 PF05569 BlaR1 peptidase M56 AC028_08115 PF08975 Domain of unknown function (DUF1868) AC028_08120 PF00593 TonB dependent receptor AC028_08120 PF07715 TonB-dependent Receptor Plug Domain AC028_08125 PF00480 ROK family AC028_08130 PF03009 Glycerophosphoryl diester phosphodiesterase family AC028_08140 PF13482 RNase_H superfamily AC028_08145 PF00270 DEAD/DEAH box helicase AC028_08145 PF00271 Helicase conserved C-terminal domain AC028_08145 PF09369 AC028_08145 AC028_08150 PF03006 AC028_08150 AC028_08155 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AC028_08160 PF05016 Plasmid stabilisation system protein AC028_08165 PF00106 short chain dehydrogenase AC028_08170 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_08175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_08175 PF03466 LysR substrate binding domain AC028_08185 PF14305 AC028_08185 AC028_08195 PF02525 Flavodoxin-like fold AC028_08200 PF01609 Transposase DDE domain AC028_08200 PF05598 AC028_08200 AC028_08210 PF00665 Integrase core domain AC028_08210 PF13276 AC028_08210 AC028_08215 PF01527 Transposase AC028_08230 PF12760 Transposase zinc-ribbon domain AC028_08230 PF12762 AC028_08230 AC028_08245 PF00665 Integrase core domain AC028_08245 PF13276 AC028_08245 AC028_08250 PF01527 Transposase AC028_08255 PF01527 Transposase AC028_08260 PF13276 AC028_08260 AC028_08260 PF13683 AC028_08260 AC028_08270 PF01872 RibD C-terminal domain AC028_08290 PF12760 Transposase zinc-ribbon domain AC028_08290 PF12762 AC028_08290 AC028_08305 PF05532 CsbD-like AC028_08310 PF08668 HDOD domain AC028_08320 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AC028_08335 PF13460 NADH(P)-binding AC028_08340 PF00293 NUDIX domain AC028_08345 PF01435 Peptidase family M48 AC028_08355 PF10116 AC028_08355 AC028_08360 PF00085 Thioredoxin AC028_08365 PF00083 Sugar (and other) transporter AC028_08375 PF12760 Transposase zinc-ribbon domain AC028_08375 PF12762 AC028_08375 AC028_08385 PF12787 AC028_08385 AC028_08390 PF06080 AC028_08390 AC028_08405 PF07584 AC028_08405 AC028_08410 PF01882 AC028_08410 AC028_08415 PF07726 ATPase family associated with various cellular activities (AAA) AC028_08420 PF13709 Domain of unknown function (DUF4159) AC028_08425 PF01523 Putative modulator of DNA gyrase AC028_08430 PF01523 Putative modulator of DNA gyrase AC028_08435 PF01523 Putative modulator of DNA gyrase AC028_08440 PF01609 Transposase DDE domain AC028_08440 PF05598 AC028_08440 AC028_08445 PF00593 TonB dependent receptor AC028_08445 PF07715 TonB-dependent Receptor Plug Domain AC028_08450 PF00294 pfkB family carbohydrate kinase AC028_08460 PF07055 Enoyl reductase FAD binding domain AC028_08460 PF12241 Trans-2-enoyl-CoA reductase catalytic region AC028_08460 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AC028_08465 PF00486 Transcriptional regulatory protein, C terminal AC028_08465 PF13191 AAA ATPase domain AC028_08485 PF00072 Response regulator receiver domain AC028_08485 PF00196 Bacterial regulatory proteins, luxR family AC028_08490 PF07730 Histidine kinase AC028_08500 PF01070 FMN-dependent dehydrogenase AC028_08505 PF02735 Ku70/Ku80 beta-barrel domain AC028_08520 PF05610 AC028_08520 AC028_08525 PF00171 Aldehyde dehydrogenase family AC028_08540 PF00593 TonB dependent receptor AC028_08540 PF07715 TonB-dependent Receptor Plug Domain AC028_08545 PF00155 Aminotransferase class I and II AC028_08550 PF12760 Transposase zinc-ribbon domain AC028_08550 PF12762 AC028_08550 AC028_08560 PF12760 Transposase zinc-ribbon domain AC028_08560 PF12762 AC028_08560 AC028_08565 PF12760 Transposase zinc-ribbon domain AC028_08565 PF12762 AC028_08565 AC028_08570 PF00316 Fructose-1-6-bisphosphatase AC028_08580 PF01609 Transposase DDE domain AC028_08580 PF05598 AC028_08580 AC028_08595 PF13276 AC028_08595 AC028_08595 PF13683 AC028_08595 AC028_08600 PF01527 Transposase AC028_08610 PF01527 Transposase AC028_08615 PF00665 Integrase core domain AC028_08615 PF13276 AC028_08615 AC028_08630 PF12760 Transposase zinc-ribbon domain AC028_08630 PF12762 AC028_08630 AC028_08640 PF00117 Glutamine amidotransferase class-I AC028_08650 PF00902 Sec-independent protein translocase protein (TatC) AC028_08655 PF02416 mttA/Hcf106 family AC028_08660 PF02416 mttA/Hcf106 family AC028_08665 PF04366 AC028_08665 AC028_08670 PF00762 Ferrochelatase AC028_08675 PF00561 alpha/beta hydrolase fold AC028_08685 PF01863 Protein of unknown function DUF45 AC028_08690 PF04381 Putative exonuclease, RdgC AC028_08695 PF01171 PP-loop family AC028_08705 PF00356 Bacterial regulatory proteins, lacI family AC028_08705 PF13377 Periplasmic binding protein-like domain AC028_08710 PF03648 Glycosyl hydrolase family 67 N-terminus AC028_08710 PF07477 Glycosyl hydrolase family 67 C-terminus AC028_08710 PF07488 Glycosyl hydrolase family 67 middle domain AC028_08715 PF02837 Glycosyl hydrolases family 2, sugar binding domain AC028_08715 PF03629 Domain of unknown function (DUF303) AC028_08720 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AC028_08720 PF13378 Enolase C-terminal domain-like AC028_08725 PF04616 Glycosyl hydrolases family 43 AC028_08735 PF01609 Transposase DDE domain AC028_08735 PF05598 AC028_08735 AC028_08740 PF14310 Fibronectin type III-like domain AC028_08745 PF01232 Mannitol dehydrogenase Rossmann domain AC028_08745 PF08125 Mannitol dehydrogenase C-terminal domain AC028_08765 PF01344 Kelch motif AC028_08765 PF13964 Kelch motif AC028_08770 PF00440 Bacterial regulatory proteins, tetR family AC028_08775 PF00171 Aldehyde dehydrogenase family AC028_08790 PF00202 Aminotransferase class-III AC028_08795 PF00596 Class II Aldolase and Adducin N-terminal domain AC028_08800 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AC028_08800 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AC028_08805 PF09694 AC028_08805 AC028_08810 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) AC028_08815 PF08450 SMP-30/Gluconolaconase/LRE-like region AC028_08820 PF00331 Glycosyl hydrolase family 10 AC028_08825 PF00703 Glycosyl hydrolases family 2 AC028_08825 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AC028_08825 PF02837 Glycosyl hydrolases family 2, sugar binding domain AC028_08825 PF16355 AC028_08825 AC028_08830 PF02614 Glucuronate isomerase AC028_08850 PF00331 Glycosyl hydrolase family 10 AC028_08855 PF07690 Major Facilitator Superfamily AC028_08860 PF00593 TonB dependent receptor AC028_08860 PF07715 TonB-dependent Receptor Plug Domain AC028_08865 PF13347 MFS/sugar transport protein AC028_08870 PF04616 Glycosyl hydrolases family 43 AC028_08875 PF08212 Lipocalin-like domain AC028_08880 PF06877 Regulator of ribonuclease activity B AC028_08900 PF12760 Transposase zinc-ribbon domain AC028_08900 PF12762 AC028_08900 AC028_08915 PF01527 Transposase AC028_08920 PF13276 AC028_08920 AC028_08920 PF13683 AC028_08920 AC028_08935 PF13855 Leucine rich repeat AC028_08940 PF05819 AC028_08940 AC028_08950 PF03211 Pectate lyase AC028_08955 PF05932 Tir chaperone protein (CesT) family AC028_08980 PF01313 AC028_08980 AC028_08985 PF00813 AC028_08985 AC028_08990 PF01052 Surface presentation of antigens (SPOA) AC028_08995 PF09483 AC028_08995 AC028_09000 PF00771 FHIPEP family AC028_09005 PF01312 FlhB HrpN YscU SpaS Family AC028_09010 PF09613 AC028_09010 AC028_09015 PF09487 AC028_09015 AC028_09020 PF01514 Secretory protein of YscJ/FliF family AC028_09025 PF09502 AC028_09025 AC028_09030 PF02108 AC028_09030 AC028_09035 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AC028_09035 PF02874 ATP synthase alpha/beta family, beta-barrel domain AC028_09040 PF09486 AC028_09040 AC028_09045 PF01311 AC028_09045 AC028_09050 PF00263 AC028_09050 AC028_09050 PF03958 Bacterial type II/III secretion system short domain AC028_09060 PF01464 Transglycosylase SLT domain AC028_09070 PF12760 Transposase zinc-ribbon domain AC028_09070 PF12762 AC028_09070 AC028_09080 PF12760 Transposase zinc-ribbon domain AC028_09080 PF12762 AC028_09080 AC028_09085 PF10431 C-terminal, D2-small domain, of ClpB protein AC028_09090 PF12760 Transposase zinc-ribbon domain AC028_09090 PF12762 AC028_09090 AC028_09095 PF00106 short chain dehydrogenase AC028_09100 PF12833 Helix-turn-helix domain AC028_09100 PF12852 Cupin AC028_09110 PF00106 short chain dehydrogenase AC028_09110 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_09115 PF01145 SPFH domain / Band 7 family AC028_09120 PF13409 Glutathione S-transferase, N-terminal domain AC028_09120 PF13410 Glutathione S-transferase, C-terminal domain AC028_09125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AC028_09130 PF13548 AC028_09130 AC028_09135 PF00756 Putative esterase AC028_09140 PF05708 Orthopoxvirus protein of unknown function (DUF830) AC028_09145 PF12823 AC028_09145 AC028_09155 PF00326 Prolyl oligopeptidase family AC028_09155 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AC028_09165 PF07759 AC028_09165 AC028_09170 PF00990 GGDEF domain AC028_09185 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AC028_09190 PF00892 EamA-like transporter family AC028_09210 PF00324 Amino acid permease AC028_09220 PF01544 CorA-like Mg2+ transporter protein AC028_09225 PF01987 Mitochondrial biogenesis AIM24 AC028_09230 PF01204 Trehalase AC028_09235 PF01904 Protein of unknown function DUF72 AC028_09240 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AC028_09240 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AC028_09250 PF01590 GAF domain AC028_09255 PF00675 Insulinase (Peptidase family M16) AC028_09255 PF05193 Peptidase M16 inactive domain AC028_09260 PF00990 GGDEF domain AC028_09260 PF01590 GAF domain AC028_09260 PF08447 PAS fold AC028_09260 PF08448 PAS fold AC028_09265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_09265 PF00672 HAMP domain AC028_09265 PF17200 AC028_09265 AC028_09270 PF00150 Cellulase (glycosyl hydrolase family 5) AC028_09270 PF00553 Cellulose binding domain AC028_09275 PF00916 AC028_09275 AC028_09275 PF01740 STAS domain AC028_09280 PF00990 GGDEF domain AC028_09285 PF02225 PA domain AC028_09285 PF04389 Peptidase family M28 AC028_09290 PF13632 Glycosyl transferase family group 2 AC028_09295 PF02230 Phospholipase/Carboxylesterase AC028_09300 PF06580 AC028_09300 AC028_09305 PF00072 Response regulator receiver domain AC028_09305 PF04397 LytTr DNA-binding domain AC028_09310 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AC028_09310 PF03900 Porphobilinogen deaminase, C-terminal domain AC028_09315 PF04338 Protein of unknown function, DUF481 AC028_09320 PF08279 HTH domain AC028_09320 PF13280 AC028_09320 AC028_09325 PF08212 Lipocalin-like domain AC028_09335 PF00326 Prolyl oligopeptidase family AC028_09335 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AC028_09340 PF00155 Aminotransferase class I and II AC028_09345 PF00326 Prolyl oligopeptidase family AC028_09345 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AC028_09350 PF04304 AC028_09350 AC028_09355 PF13627 AC028_09355 AC028_09360 PF01678 Diaminopimelate epimerase AC028_09365 PF04340 Protein of unknown function, DUF484 AC028_09370 PF00589 Phage integrase family AC028_09370 PF02899 Phage integrase, N-terminal SAM-like domain AC028_09375 PF00227 Proteasome subunit AC028_09380 PF00004 ATPase family associated with various cellular activities (AAA) AC028_09380 PF07724 AAA domain (Cdc48 subfamily) AC028_09380 PF10431 C-terminal, D2-small domain, of ClpB protein AC028_09385 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AC028_09390 PF13673 Acetyltransferase (GNAT) domain AC028_09395 PF16576 AC028_09395 AC028_09400 PF07690 Major Facilitator Superfamily AC028_09405 PF01209 ubiE/COQ5 methyltransferase family AC028_09410 PF00990 GGDEF domain AC028_09415 PF01433 Peptidase family M1 AC028_09415 PF09127 Leukotriene A4 hydrolase, C-terminal AC028_09425 PF00702 haloacid dehalogenase-like hydrolase AC028_09430 PF13360 PQQ-like domain AC028_09430 PF13570 PQQ-like domain AC028_09435 PF00497 Bacterial extracellular solute-binding proteins, family 3 AC028_09435 PF12796 Ankyrin repeats (3 copies) AC028_09435 PF13857 Ankyrin repeats (many copies) AC028_09440 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AC028_09445 PF10282 Lactonase, 7-bladed beta-propeller AC028_09450 PF00107 Zinc-binding dehydrogenase AC028_09450 PF08240 Alcohol dehydrogenase GroES-like domain AC028_09455 PF00593 TonB dependent receptor AC028_09455 PF07715 TonB-dependent Receptor Plug Domain AC028_09460 PF00158 Sigma-54 interaction domain AC028_09460 PF01590 GAF domain AC028_09460 PF02954 Bacterial regulatory protein, Fis family AC028_09465 PF00294 pfkB family carbohydrate kinase AC028_09470 PF06723 MreB/Mbl protein AC028_09475 PF04085 rod shape-determining protein MreC AC028_09480 PF04093 AC028_09480 AC028_09485 PF00905 Penicillin binding protein transpeptidase domain AC028_09485 PF03717 Penicillin-binding Protein dimerisation domain AC028_09490 PF01098 AC028_09490 AC028_09495 PF00295 Glycosyl hydrolases family 28 AC028_09500 PF13406 Transglycosylase SLT domain AC028_09505 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel AC028_09505 PF05036 Sporulation related domain AC028_09510 PF00768 D-alanyl-D-alanine carboxypeptidase AC028_09510 PF07943 Penicillin-binding protein 5, C-terminal domain AC028_09515 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) AC028_09520 PF04359 Protein of unknown function (DUF493) AC028_09525 PF03099 Biotin/lipoate A/B protein ligase family AC028_09530 PF04055 Radical SAM superfamily AC028_09530 PF16881 AC028_09530 AC028_09535 PF00595 PDZ domain (Also known as DHR or GLGF) AC028_09535 PF03572 Peptidase family S41 AC028_09535 PF11818 AC028_09535 AC028_09540 PF01925 AC028_09540 AC028_09545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_09545 PF03466 LysR substrate binding domain AC028_09550 PF03372 Endonuclease/Exonuclease/phosphatase family AC028_09555 PF00293 NUDIX domain AC028_09555 PF01467 Cytidylyltransferase AC028_09560 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AC028_09570 PF01555 DNA methylase AC028_09580 PF05433 AC028_09580 AC028_09590 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AC028_09590 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AC028_09600 PF04972 BON domain AC028_09605 PF00512 His Kinase A (phospho-acceptor) domain AC028_09605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_09605 PF05227 CHASE3 domain AC028_09605 PF13188 PAS domain AC028_09610 PF00072 Response regulator receiver domain AC028_09615 PF00072 Response regulator receiver domain AC028_09615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_09620 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AC028_09625 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_09630 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase AC028_09640 PF00593 TonB dependent receptor AC028_09640 PF07715 TonB-dependent Receptor Plug Domain AC028_09645 PF13640 2OG-Fe(II) oxygenase superfamily AC028_09655 PF00593 TonB dependent receptor AC028_09655 PF07715 TonB-dependent Receptor Plug Domain AC028_09660 PF11356 Type IV pilus biogenesis AC028_09660 PF13180 PDZ domain AC028_09665 PF00263 AC028_09665 AC028_09665 PF03958 Bacterial type II/III secretion system short domain AC028_09670 PF00437 Type II/IV secretion system protein AC028_09675 PF00482 Type II secretion system (T2SS), protein F AC028_09680 PF07963 Prokaryotic N-terminal methylation motif AC028_09680 PF08334 Type II secretion system (T2SS), protein G AC028_09685 PF07963 Prokaryotic N-terminal methylation motif AC028_09685 PF12019 Type II transport protein GspH AC028_09690 PF02501 Type II secretion system (T2SS), protein I AC028_09690 PF07963 Prokaryotic N-terminal methylation motif AC028_09695 PF07963 Prokaryotic N-terminal methylation motif AC028_09695 PF11612 Type II secretion system (T2SS), protein J AC028_09700 PF03934 Type II secretion system (T2SS), protein K AC028_09705 PF05134 Type II secretion system (T2SS), protein L AC028_09705 PF12693 GspL periplasmic domain AC028_09710 PF04612 Type II secretion system (T2SS), protein M AC028_09715 PF01203 AC028_09715 AC028_09720 PF00593 TonB dependent receptor AC028_09720 PF07715 TonB-dependent Receptor Plug Domain AC028_09725 PF00703 Glycosyl hydrolases family 2 AC028_09725 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AC028_09725 PF02837 Glycosyl hydrolases family 2, sugar binding domain AC028_09725 PF16355 AC028_09725 AC028_09730 PF05089 Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain AC028_09730 PF12971 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain AC028_09730 PF12972 Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain AC028_09735 PF07786 AC028_09735 AC028_09740 PF00392 Bacterial regulatory proteins, gntR family AC028_09740 PF07702 UTRA domain AC028_09745 PF07690 Major Facilitator Superfamily AC028_09750 PF00356 Bacterial regulatory proteins, lacI family AC028_09750 PF13377 Periplasmic binding protein-like domain AC028_09755 PF01380 SIS domain AC028_09760 PF01979 Amidohydrolase family AC028_09770 PF00593 TonB dependent receptor AC028_09770 PF07715 TonB-dependent Receptor Plug Domain AC028_09775 PF01743 Poly A polymerase head domain AC028_09775 PF01966 HD domain AC028_09775 PF12627 Probable RNA and SrmB- binding site of polymerase A AC028_09780 PF00732 GMC oxidoreductase AC028_09780 PF05199 GMC oxidoreductase AC028_09785 PF00171 Aldehyde dehydrogenase family AC028_09790 PF02028 BCCT family transporter AC028_09795 PF03372 Endonuclease/Exonuclease/phosphatase family AC028_09800 PF01323 DSBA-like thioredoxin domain AC028_09805 PF13462 Thioredoxin AC028_09810 PF00034 Cytochrome c AC028_09815 PF01926 50S ribosome-binding GTPase AC028_09820 PF00753 Metallo-beta-lactamase superfamily AC028_09825 PF12833 Helix-turn-helix domain AC028_09830 PF04107 Glutamate-cysteine ligase family 2(GCS2) AC028_09840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_09845 PF00072 Response regulator receiver domain AC028_09845 PF00486 Transcriptional regulatory protein, C terminal AC028_09850 PF00534 Glycosyl transferases group 1 AC028_09860 PF02583 Metal-sensitive transcriptional repressor AC028_09865 PF00107 Zinc-binding dehydrogenase AC028_09865 PF08240 Alcohol dehydrogenase GroES-like domain AC028_09870 PF04828 Glutathione-dependent formaldehyde-activating enzyme AC028_09875 PF00756 Putative esterase AC028_09885 PF00155 Aminotransferase class I and II AC028_09885 PF00392 Bacterial regulatory proteins, gntR family AC028_09890 PF02567 Phenazine biosynthesis-like protein AC028_09895 PF00892 EamA-like transporter family AC028_09905 PF00005 ABC transporter AC028_09905 PF12848 ABC transporter AC028_09910 PF11776 Domain of unknown function (DUF3315) AC028_09915 PF00464 Serine hydroxymethyltransferase AC028_09920 PF03477 ATP cone domain AC028_09925 PF00583 Acetyltransferase (GNAT) family AC028_09930 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AC028_09930 PF01872 RibD C-terminal domain AC028_09940 PF00677 Lumazine binding domain AC028_09945 PF00925 GTP cyclohydrolase II AC028_09945 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AC028_09950 PF00885 6,7-dimethyl-8-ribityllumazine synthase AC028_09955 PF01029 NusB family AC028_09960 PF00586 AIR synthase related protein, N-terminal domain AC028_09960 PF02769 AIR synthase related protein, C-terminal domain AC028_09965 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AC028_09965 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AC028_09970 PF00646 F-box domain AC028_09975 PF09604 AC028_09975 AC028_09980 PF03814 AC028_09980 AC028_09985 PF00122 E1-E2 ATPase AC028_09985 PF00702 haloacid dehalogenase-like hydrolase AC028_09990 PF02669 AC028_09990 AC028_09995 PF00512 His Kinase A (phospho-acceptor) domain AC028_09995 PF00582 Universal stress protein family AC028_09995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_09995 PF02702 Osmosensitive K+ channel His kinase sensor domain AC028_09995 PF13493 Domain of unknown function (DUF4118) AC028_10000 PF00072 Response regulator receiver domain AC028_10000 PF00486 Transcriptional regulatory protein, C terminal AC028_10005 PF01565 FAD binding domain AC028_10005 PF02913 FAD linked oxidases, C-terminal domain AC028_10010 PF04307 AC028_10010 AC028_10015 PF02021 Uncharacterised protein family UPF0102 AC028_10020 PF04348 LppC putative lipoprotein AC028_10025 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AC028_10030 PF05742 AC028_10030 AC028_10035 PF02381 MraZ protein AC028_10040 PF01795 MraW methylase family AC028_10045 PF04999 AC028_10045 AC028_10055 PF00905 Penicillin binding protein transpeptidase domain AC028_10055 PF03717 Penicillin-binding Protein dimerisation domain AC028_10060 PF01225 Mur ligase family, catalytic domain AC028_10060 PF02875 Mur ligase family, glutamate ligase domain AC028_10060 PF08245 Mur ligase middle domain AC028_10065 PF01225 Mur ligase family, catalytic domain AC028_10065 PF02875 Mur ligase family, glutamate ligase domain AC028_10065 PF08245 Mur ligase middle domain AC028_10070 PF00953 Glycosyl transferase family 4 AC028_10075 PF01098 AC028_10075 AC028_10080 PF03033 Glycosyltransferase family 28 N-terminal domain AC028_10080 PF04101 Glycosyltransferase family 28 C-terminal domain AC028_10085 PF01225 Mur ligase family, catalytic domain AC028_10085 PF02875 Mur ligase family, glutamate ligase domain AC028_10085 PF08245 Mur ligase middle domain AC028_10090 PF01820 D-ala D-ala ligase N-terminus AC028_10090 PF07478 D-ala D-ala ligase C-terminus AC028_10095 PF03799 Cell division protein FtsQ AC028_10095 PF08478 POTRA domain, FtsQ-type AC028_10100 PF02491 SHS2 domain inserted in FTSA AC028_10100 PF14450 Cell division protein FtsA AC028_10105 PF00091 Tubulin/FtsZ family, GTPase domain AC028_10105 PF12327 FtsZ family, C-terminal domain AC028_10110 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AC028_10115 PF05258 AC028_10115 AC028_10120 PF01551 Peptidase family M23 AC028_10125 PF01043 SecA preprotein cross-linking domain AC028_10125 PF02810 SEC-C motif AC028_10125 PF07516 SecA Wing and Scaffold domain AC028_10125 PF07517 SecA DEAD-like domain AC028_10130 PF00293 NUDIX domain AC028_10130 PF02581 Thiamine monophosphate synthase/TENI AC028_10140 PF02219 Methylenetetrahydrofolate reductase AC028_10145 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AC028_10150 PF08240 Alcohol dehydrogenase GroES-like domain AC028_10150 PF13602 Zinc-binding dehydrogenase AC028_10155 PF00082 Subtilase family AC028_10155 PF09286 Pro-kumamolisin, activation domain AC028_10160 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AC028_10165 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AC028_10170 PF00128 Alpha amylase, catalytic domain AC028_10180 PF09831 AC028_10180 AC028_10185 PF11539 Protein of unknown function (DUF3228) AC028_10195 PF00685 Sulfotransferase domain AC028_10200 PF00067 Cytochrome P450 AC028_10205 PF13649 Methyltransferase domain AC028_10210 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AC028_10210 PF05221 S-adenosyl-L-homocysteine hydrolase AC028_10215 PF00326 Prolyl oligopeptidase family AC028_10220 PF12760 Transposase zinc-ribbon domain AC028_10220 PF12762 AC028_10220 AC028_10225 PF00311 Phosphoenolpyruvate carboxylase AC028_10230 PF00440 Bacterial regulatory proteins, tetR family AC028_10235 PF13387 AC028_10235 AC028_10245 PF00691 OmpA family AC028_10255 PF00593 TonB dependent receptor AC028_10255 PF07715 TonB-dependent Receptor Plug Domain AC028_10260 PF00328 Histidine phosphatase superfamily (branch 2) AC028_10265 PF00438 S-adenosylmethionine synthetase, N-terminal domain AC028_10265 PF02772 S-adenosylmethionine synthetase, central domain AC028_10265 PF02773 S-adenosylmethionine synthetase, C-terminal domain AC028_10270 PF04307 AC028_10270 AC028_10275 PF08241 Methyltransferase domain AC028_10280 PF01207 Dihydrouridine synthase (Dus) AC028_10285 PF08306 Glycosyl hydrolase family 98 AC028_10285 PF08307 Glycosyl hydrolase family 98 C-terminal domain AC028_10285 PF16990 AC028_10285 AC028_10290 PF00294 pfkB family carbohydrate kinase AC028_10295 PF01773 Na+ dependent nucleoside transporter N-terminus AC028_10295 PF07662 Na+ dependent nucleoside transporter C-terminus AC028_10295 PF07670 Nucleoside recognition AC028_10300 PF00248 Aldo/keto reductase family AC028_10305 PF10636 Hemin uptake protein hemP AC028_10310 PF00593 TonB dependent receptor AC028_10310 PF07715 TonB-dependent Receptor Plug Domain AC028_10325 PF04342 AC028_10325 AC028_10330 PF00528 Binding-protein-dependent transport system inner membrane component AC028_10335 PF00005 ABC transporter AC028_10340 PF13379 NMT1-like family AC028_10345 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AC028_10350 PF02687 AC028_10350 AC028_10355 PF00005 ABC transporter AC028_10360 PF13472 GDSL-like Lipase/Acylhydrolase family AC028_10365 PF00072 Response regulator receiver domain AC028_10365 PF00486 Transcriptional regulatory protein, C terminal AC028_10370 PF00512 His Kinase A (phospho-acceptor) domain AC028_10370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_10375 PF13472 GDSL-like Lipase/Acylhydrolase family AC028_10380 PF01219 Prokaryotic diacylglycerol kinase AC028_10385 PF04011 LemA family AC028_10390 PF04536 TLP18 AC028_10395 PF04536 TLP18 AC028_10400 PF01790 AC028_10400 AC028_10405 PF00303 Thymidylate synthase AC028_10415 PF00186 Dihydrofolate reductase AC028_10420 PF00158 Sigma-54 interaction domain AC028_10425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_10425 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AC028_10430 PF00005 ABC transporter AC028_10435 PF00528 Binding-protein-dependent transport system inner membrane component AC028_10440 PF09084 NMT1/THI5 like AC028_10445 PF00296 Luciferase-like monooxygenase AC028_10450 PF03358 NADPH-dependent FMN reductase AC028_10460 PF01609 Transposase DDE domain AC028_10460 PF05598 AC028_10460 AC028_10465 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AC028_10470 PF00296 Luciferase-like monooxygenase AC028_10475 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AC028_10480 PF00528 Binding-protein-dependent transport system inner membrane component AC028_10485 PF00528 Binding-protein-dependent transport system inner membrane component AC028_10490 PF00005 ABC transporter AC028_10490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AC028_10495 PF00149 Calcineurin-like phosphoesterase AC028_10500 PF04379 Protein of unknown function (DUF525) AC028_10505 PF00398 Ribosomal RNA adenine dimethylase AC028_10510 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AC028_10515 PF00639 PPIC-type PPIASE domain AC028_10515 PF09312 SurA N-terminal domain AC028_10515 PF13616 PPIC-type PPIASE domain AC028_10520 PF03968 OstA-like protein AC028_10520 PF04453 Organic solvent tolerance protein AC028_10525 PF00850 Histone deacetylase domain AC028_10530 PF01923 Cobalamin adenosyltransferase AC028_10540 PF01494 FAD binding domain AC028_10545 PF01494 FAD binding domain AC028_10555 PF13577 SnoaL-like domain AC028_10560 PF13557 AC028_10560 AC028_10565 PF00392 Bacterial regulatory proteins, gntR family AC028_10565 PF07729 FCD domain AC028_10570 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AC028_10575 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit AC028_10580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_10580 PF03466 LysR substrate binding domain AC028_10585 PF00501 AMP-binding enzyme AC028_10585 PF13193 AMP-binding enzyme C-terminal domain AC028_10595 PF00378 Enoyl-CoA hydratase/isomerase family AC028_10600 PF12802 MarR family AC028_10605 PF13202 EF hand AC028_10615 PF08450 SMP-30/Gluconolaconase/LRE-like region AC028_10620 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AC028_10625 PF01728 FtsJ-like methyltransferase AC028_10630 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AC028_10660 PF00749 tRNA synthetases class I (E and Q), catalytic domain AC028_10660 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AC028_10665 PF13409 Glutathione S-transferase, N-terminal domain AC028_10670 PF09413 Domain of unknown function (DUF2007) AC028_10675 PF00072 Response regulator receiver domain AC028_10680 PF00072 Response regulator receiver domain AC028_10680 PF00512 His Kinase A (phospho-acceptor) domain AC028_10680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_10680 PF05227 CHASE3 domain AC028_10685 PF00196 Bacterial regulatory proteins, luxR family AC028_10690 PF08332 Calcium/calmodulin dependent protein kinase II Association AC028_10695 PF01625 Peptide methionine sulfoxide reductase AC028_10700 PF01965 DJ-1/PfpI family AC028_10705 PF00923 Transaldolase AC028_10710 PF01272 Transcription elongation factor, GreA/GreB, C-term AC028_10710 PF14760 Rnk N-terminus AC028_10715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_10715 PF03466 LysR substrate binding domain AC028_10720 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_10720 PF13192 Thioredoxin domain AC028_10725 PF00578 AhpC/TSA family AC028_10725 PF10417 C-terminal domain of 1-Cys peroxiredoxin AC028_10730 PF05175 Methyltransferase small domain AC028_10735 PF00561 alpha/beta hydrolase fold AC028_10740 PF05013 N-formylglutamate amidohydrolase AC028_10745 PF00293 NUDIX domain AC028_10750 PF01367 5'-3' exonuclease, C-terminal SAM fold AC028_10750 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AC028_10755 PF00881 Nitroreductase family AC028_10760 PF07793 AC028_10760 AC028_10765 PF07793 AC028_10765 AC028_10770 PF12146 Putative lysophospholipase AC028_10775 PF00440 Bacterial regulatory proteins, tetR family AC028_10775 PF13305 WHG domain AC028_10780 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AC028_10780 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AC028_10785 PF11304 AC028_10785 AC028_10795 PF04542 Sigma-70 region 2 AC028_10795 PF08281 Sigma-70, region 4 AC028_10800 PF12769 Domain of unknown function (DUF3814) AC028_10805 PF02233 NAD(P) transhydrogenase beta subunit AC028_10815 PF01883 Domain of unknown function DUF59 AC028_10820 PF01063 Aminotransferase class IV AC028_10825 PF00082 Subtilase family AC028_10825 PF04151 Bacterial pre-peptidase C-terminal domain AC028_10830 PF00082 Subtilase family AC028_10835 PF00082 Subtilase family AC028_10835 PF04151 Bacterial pre-peptidase C-terminal domain AC028_10840 PF04073 Aminoacyl-tRNA editing domain AC028_10845 PF00710 Asparaginase AC028_10855 PF02055 O-Glycosyl hydrolase family 30 AC028_10855 PF17189 AC028_10855 AC028_10860 PF09842 AC028_10860 AC028_10865 PF03358 NADPH-dependent FMN reductase AC028_10870 PF03631 AC028_10870 AC028_10875 PF00578 AhpC/TSA family AC028_10880 PF00708 Acylphosphatase AC028_10890 PF03976 Polyphosphate kinase 2 (PPK2) AC028_10895 PF00994 Probable molybdopterin binding domain AC028_10900 PF13844 Glycosyl transferase family 41 AC028_10900 PF14559 Tetratricopeptide repeat AC028_10905 PF00472 RF-1 domain AC028_10905 PF03462 PCRF domain AC028_10910 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AC028_10910 PF01488 Shikimate / quinate 5-dehydrogenase AC028_10910 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AC028_10915 PF13429 Tetratricopeptide repeat AC028_10920 PF03550 Outer membrane lipoprotein LolB AC028_10925 PF00288 GHMP kinases N terminal domain AC028_10925 PF08544 GHMP kinases C terminal AC028_10935 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AC028_10935 PF14572 Phosphoribosyl synthetase-associated domain AC028_10940 PF01386 Ribosomal L25p family AC028_10940 PF14693 Ribosomal protein TL5, C-terminal domain AC028_10945 PF01195 Peptidyl-tRNA hydrolase AC028_10950 PF01926 50S ribosome-binding GTPase AC028_10950 PF06071 Protein of unknown function (DUF933) AC028_10970 PF00009 Elongation factor Tu GTP binding domain AC028_10970 PF03143 Elongation factor Tu C-terminal domain AC028_10970 PF03144 Elongation factor Tu domain 2 AC028_10980 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AC028_10985 PF00467 KOW motif AC028_10985 PF02357 Transcription termination factor nusG AC028_10990 PF00298 Ribosomal protein L11, RNA binding domain AC028_10990 PF03946 Ribosomal protein L11, N-terminal domain AC028_10995 PF00687 Ribosomal protein L1p/L10e family AC028_11000 PF00466 Ribosomal protein L10 AC028_11005 PF00542 Ribosomal protein L7/L12 C-terminal domain AC028_11005 PF16320 AC028_11005 AC028_11010 PF00562 RNA polymerase Rpb2, domain 6 AC028_11010 PF04560 RNA polymerase Rpb2, domain 7 AC028_11010 PF04561 RNA polymerase Rpb2, domain 2 AC028_11010 PF04563 RNA polymerase beta subunit AC028_11010 PF04565 RNA polymerase Rpb2, domain 3 AC028_11010 PF10385 RNA polymerase beta subunit external 1 domain AC028_11015 PF00623 RNA polymerase Rpb1, domain 2 AC028_11015 PF04983 RNA polymerase Rpb1, domain 3 AC028_11015 PF04997 RNA polymerase Rpb1, domain 1 AC028_11015 PF04998 RNA polymerase Rpb1, domain 5 AC028_11015 PF05000 RNA polymerase Rpb1, domain 4 AC028_11020 PF00164 Ribosomal protein S12/S23 AC028_11025 PF00177 Ribosomal protein S7p/S5e AC028_11030 PF00009 Elongation factor Tu GTP binding domain AC028_11030 PF00679 Elongation factor G C-terminus AC028_11030 PF03144 Elongation factor Tu domain 2 AC028_11030 PF03764 Elongation factor G, domain IV AC028_11030 PF14492 Elongation Factor G, domain II AC028_11035 PF00009 Elongation factor Tu GTP binding domain AC028_11035 PF03143 Elongation factor Tu C-terminal domain AC028_11035 PF03144 Elongation factor Tu domain 2 AC028_11040 PF00338 Ribosomal protein S10p/S20e AC028_11045 PF00297 Ribosomal protein L3 AC028_11050 PF00573 Ribosomal protein L4/L1 family AC028_11055 PF00276 Ribosomal protein L23 AC028_11060 PF00181 Ribosomal Proteins L2, RNA binding domain AC028_11060 PF03947 Ribosomal Proteins L2, C-terminal domain AC028_11065 PF00203 Ribosomal protein S19 AC028_11070 PF00237 Ribosomal protein L22p/L17e AC028_11075 PF00189 Ribosomal protein S3, C-terminal domain AC028_11075 PF07650 KH domain AC028_11080 PF00252 Ribosomal protein L16p/L10e AC028_11085 PF00831 Ribosomal L29 protein AC028_11090 PF00366 Ribosomal protein S17 AC028_11095 PF00238 Ribosomal protein L14p/L23e AC028_11100 PF00467 KOW motif AC028_11100 PF17136 AC028_11100 AC028_11105 PF00281 Ribosomal protein L5 AC028_11105 PF00673 ribosomal L5P family C-terminus AC028_11110 PF00253 Ribosomal protein S14p/S29e AC028_11115 PF00410 Ribosomal protein S8 AC028_11120 PF00347 Ribosomal protein L6 AC028_11125 PF00861 Ribosomal L18p/L5e family AC028_11130 PF00333 Ribosomal protein S5, N-terminal domain AC028_11130 PF03719 Ribosomal protein S5, C-terminal domain AC028_11135 PF00327 Ribosomal protein L30p/L7e AC028_11140 PF00828 Ribosomal protein L18e/L15 AC028_11145 PF00344 SecY translocase AC028_11150 PF00416 Ribosomal protein S13/S18 AC028_11155 PF00411 Ribosomal protein S11 AC028_11160 PF00163 Ribosomal protein S4/S9 N-terminal domain AC028_11160 PF01479 S4 domain AC028_11165 PF01000 RNA polymerase Rpb3/RpoA insert domain AC028_11165 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AC028_11165 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AC028_11170 PF01196 Ribosomal protein L17 AC028_11175 PF02600 Disulfide bond formation protein DsbB AC028_11185 PF00593 TonB dependent receptor AC028_11185 PF07715 TonB-dependent Receptor Plug Domain AC028_11190 PF01474 Class-II DAHP synthetase family AC028_11195 PF00924 Mechanosensitive ion channel AC028_11200 PF01425 Amidase AC028_11205 PF09900 AC028_11205 AC028_11210 PF00009 Elongation factor Tu GTP binding domain AC028_11210 PF00679 Elongation factor G C-terminus AC028_11210 PF03144 Elongation factor Tu domain 2 AC028_11215 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AC028_11220 PF00056 lactate/malate dehydrogenase, NAD binding domain AC028_11220 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AC028_11225 PF00043 Glutathione S-transferase, C-terminal domain AC028_11225 PF02798 Glutathione S-transferase, N-terminal domain AC028_11230 PF07486 Cell Wall Hydrolase AC028_11235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AC028_11235 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_11240 PF08240 Alcohol dehydrogenase GroES-like domain AC028_11240 PF13602 Zinc-binding dehydrogenase AC028_11245 PF00691 OmpA family AC028_11245 PF13505 Outer membrane protein beta-barrel domain AC028_11255 PF00849 RNA pseudouridylate synthase AC028_11255 PF01479 S4 domain AC028_11265 PF00155 Aminotransferase class I and II AC028_11270 PF13531 Bacterial extracellular solute-binding protein AC028_11275 PF00528 Binding-protein-dependent transport system inner membrane component AC028_11280 PF00528 Binding-protein-dependent transport system inner membrane component AC028_11285 PF00005 ABC transporter AC028_11285 PF12857 AC028_11285 AC028_11290 PF09694 AC028_11290 AC028_11295 PF00107 Zinc-binding dehydrogenase AC028_11295 PF08240 Alcohol dehydrogenase GroES-like domain AC028_11300 PF00593 TonB dependent receptor AC028_11300 PF07715 TonB-dependent Receptor Plug Domain AC028_11305 PF04185 Phosphoesterase family AC028_11305 PF05506 AC028_11305 AC028_11310 PF10459 Peptidase S46 AC028_11315 PF00300 Histidine phosphatase superfamily (branch 1) AC028_11320 PF02875 Mur ligase family, glutamate ligase domain AC028_11320 PF08245 Mur ligase middle domain AC028_11325 PF05036 Sporulation related domain AC028_11330 PF02674 AC028_11330 AC028_11335 PF13522 Glutamine amidotransferase domain AC028_11340 PF04305 AC028_11340 AC028_11355 PF00149 Calcineurin-like phosphoesterase AC028_11360 PF01569 PAP2 superfamily AC028_11365 PF00534 Glycosyl transferases group 1 AC028_11365 PF13439 Glycosyltransferase Family 4 AC028_11370 PF02541 Ppx/GppA phosphatase family AC028_11375 PF02503 Polyphosphate kinase middle domain AC028_11375 PF13089 Polyphosphate kinase N-terminal domain AC028_11375 PF13090 Polyphosphate kinase C-terminal domain AC028_11380 PF00512 His Kinase A (phospho-acceptor) domain AC028_11380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_11380 PF11808 AC028_11380 AC028_11385 PF00072 Response regulator receiver domain AC028_11385 PF00486 Transcriptional regulatory protein, C terminal AC028_11390 PF01435 Peptidase family M48 AC028_11395 PF00462 Glutaredoxin AC028_11400 PF02627 Carboxymuconolactone decarboxylase family AC028_11405 PF00180 Isocitrate/isopropylmalate dehydrogenase AC028_11410 PF12811 AC028_11410 AC028_11435 PF12760 Transposase zinc-ribbon domain AC028_11435 PF12762 AC028_11435 AC028_11450 PF05697 Bacterial trigger factor protein (TF) AC028_11450 PF05698 Bacterial trigger factor protein (TF) C-terminus AC028_11455 PF00574 Clp protease AC028_11460 PF06689 ClpX C4-type zinc finger AC028_11460 PF07724 AAA domain (Cdc48 subfamily) AC028_11460 PF10431 C-terminal, D2-small domain, of ClpB protein AC028_11465 PF00004 ATPase family associated with various cellular activities (AAA) AC028_11465 PF02190 ATP-dependent protease La (LON) domain AC028_11465 PF05362 Lon protease (S16) C-terminal proteolytic domain AC028_11470 PF00216 Bacterial DNA-binding protein AC028_11490 PF13145 PPIC-type PPIASE domain AC028_11490 PF13616 PPIC-type PPIASE domain AC028_11490 PF13623 AC028_11490 AC028_11495 PF01464 Transglycosylase SLT domain AC028_11495 PF01476 LysM domain AC028_11500 PF00753 Metallo-beta-lactamase superfamily AC028_11500 PF16123 AC028_11500 AC028_11510 PF00075 RNase H AC028_11515 PF00929 Exonuclease AC028_11520 PF13672 Protein phosphatase 2C AC028_11535 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AC028_11540 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family AC028_11545 PF12706 Beta-lactamase superfamily domain AC028_11550 PF04055 Radical SAM superfamily AC028_11550 PF06463 Molybdenum Cofactor Synthesis C AC028_11550 PF13353 4Fe-4S single cluster domain AC028_11555 PF14534 Domain of unknown function (DUF4440) AC028_11560 PF01967 MoaC family AC028_11565 PF02597 ThiS family AC028_11570 PF02391 MoaE protein AC028_11580 PF12169 DNA polymerase III subunits gamma and tau domain III AC028_11580 PF12170 DNA polymerase III tau subunit V interacting with alpha AC028_11580 PF13177 DNA polymerase III, delta subunit AC028_11585 PF02575 YbaB/EbfC DNA-binding family AC028_11590 PF02132 RecR protein AC028_11590 PF13662 Toprim domain AC028_11595 PF01230 HIT domain AC028_11600 PF03843 AC028_11600 AC028_11605 PF01841 Transglutaminase-like superfamily AC028_11605 PF11992 AC028_11605 AC028_11610 PF01882 AC028_11610 AC028_11615 PF07726 ATPase family associated with various cellular activities (AAA) AC028_11620 PF13231 AC028_11620 AC028_11625 PF00535 Glycosyl transferase family 2 AC028_11635 PF02545 Maf-like protein AC028_11640 PF02620 AC028_11640 AC028_11645 PF01783 Ribosomal L32p protein family AC028_11650 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AC028_11650 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AC028_11655 PF08670 AC028_11655 AC028_11660 PF00698 Acyl transferase domain AC028_11665 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_11670 PF00550 Phosphopantetheine attachment site AC028_11675 PF00109 Beta-ketoacyl synthase, N-terminal domain AC028_11675 PF02801 Beta-ketoacyl synthase, C-terminal domain AC028_11680 PF00425 chorismate binding enzyme AC028_11685 PF02618 YceG-like family AC028_11690 PF13177 DNA polymerase III, delta subunit AC028_11695 PF07238 PilZ domain AC028_11710 PF00158 Sigma-54 interaction domain AC028_11710 PF02954 Bacterial regulatory protein, Fis family AC028_11710 PF06506 Propionate catabolism activator AC028_11715 PF13714 Phosphoenolpyruvate phosphomutase AC028_11720 PF00285 Citrate synthase AC028_11725 PF00330 Aconitase family (aconitate hydratase) AC028_11725 PF00694 Aconitase C-terminal domain AC028_11735 PF04303 PrpF protein AC028_11740 PF00593 TonB dependent receptor AC028_11740 PF07715 TonB-dependent Receptor Plug Domain AC028_11745 PF01156 Inosine-uridine preferring nucleoside hydrolase AC028_11750 PF00207 Alpha-2-macroglobulin family AC028_11750 PF01835 MG2 domain AC028_11750 PF07703 Alpha-2-macroglobulin family N-terminal region AC028_11750 PF11974 Alpha-2-macroglobulin MG1 domain AC028_11755 PF00593 TonB dependent receptor AC028_11755 PF07715 TonB-dependent Receptor Plug Domain AC028_11760 PF03009 Glycerophosphoryl diester phosphodiesterase family AC028_11760 PF16387 AC028_11760 AC028_11765 PF00905 Penicillin binding protein transpeptidase domain AC028_11765 PF00912 Transglycosylase AC028_11765 PF06832 AC028_11765 AC028_11770 PF00210 Ferritin-like domain AC028_11775 PF08534 Redoxin AC028_11780 PF00011 Hsp20/alpha crystallin family AC028_11785 PF00226 DnaJ domain AC028_11785 PF01556 DnaJ C terminal domain AC028_11790 PF00072 Response regulator receiver domain AC028_11795 PF01145 SPFH domain / Band 7 family AC028_11800 PF01145 SPFH domain / Band 7 family AC028_11805 PF01797 Transposase IS200 like AC028_11810 PF00709 Adenylosuccinate synthetase AC028_11815 PF01433 Peptidase family M1 AC028_11815 PF11838 ERAP1-like C-terminal domain AC028_11825 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_11830 PF00440 Bacterial regulatory proteins, tetR family AC028_11845 PF01527 Transposase AC028_11850 PF00665 Integrase core domain AC028_11850 PF13276 AC028_11850 AC028_11875 PF05016 Plasmid stabilisation system protein AC028_11880 PF04471 Restriction endonuclease AC028_11885 PF02384 N-6 DNA Methylase AC028_11885 PF12161 HsdM N-terminal domain AC028_11890 PF08780 Nucleotidyltransferase substrate binding protein like AC028_11895 PF01420 Type I restriction modification DNA specificity domain AC028_11900 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AC028_11900 PF04851 Type III restriction enzyme, res subunit AC028_11900 PF11867 AC028_11900 AC028_11910 PF00069 Protein kinase domain AC028_11920 PF00440 Bacterial regulatory proteins, tetR family AC028_11925 PF00300 Histidine phosphatase superfamily (branch 1) AC028_11930 PF01256 Carbohydrate kinase AC028_11935 PF12760 Transposase zinc-ribbon domain AC028_11935 PF12762 AC028_11935 AC028_11940 PF02055 O-Glycosyl hydrolase family 30 AC028_11940 PF17189 AC028_11940 AC028_11945 PF00723 Glycosyl hydrolases family 15 AC028_11950 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_11955 PF07971 Glycosyl hydrolase family 92 AC028_11960 PF00106 short chain dehydrogenase AC028_11970 PF13532 2OG-Fe(II) oxygenase superfamily AC028_11975 PF00027 Cyclic nucleotide-binding domain AC028_11975 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_11980 PF02148 Zn-finger in ubiquitin-hydrolases and other protein AC028_11985 PF00563 EAL domain AC028_11990 PF13328 HD domain AC028_11995 PF00005 ABC transporter AC028_12000 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AC028_12000 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AC028_12005 PF00941 FAD binding domain in molybdopterin dehydrogenase AC028_12005 PF03450 CO dehydrogenase flavoprotein C-terminal domain AC028_12010 PF00111 2Fe-2S iron-sulfur cluster binding domain AC028_12010 PF01799 [2Fe-2S] binding domain AC028_12015 PF05559 AC028_12015 AC028_12025 PF07883 Cupin domain AC028_12035 PF02661 Fic/DOC family AC028_12040 PF04014 Antidote-toxin recognition MazE AC028_12045 PF00717 Peptidase S24-like AC028_12045 PF01726 LexA DNA binding domain AC028_12055 PF00817 impB/mucB/samB family AC028_12065 PF02811 PHP domain AC028_12065 PF07733 Bacterial DNA polymerase III alpha subunit AC028_12065 PF14579 Helix-hairpin-helix motif AC028_12075 PF08668 HDOD domain AC028_12080 PF03169 AC028_12080 AC028_12085 PF13557 AC028_12085 AC028_12095 PF00326 Prolyl oligopeptidase family AC028_12095 PF07676 WD40-like Beta Propeller Repeat AC028_12105 PF12760 Transposase zinc-ribbon domain AC028_12105 PF12762 AC028_12105 AC028_12115 PF08448 PAS fold AC028_12115 PF12833 Helix-turn-helix domain AC028_12130 PF00199 Catalase AC028_12130 PF06628 Catalase-related immune-responsive AC028_12135 PF00248 Aldo/keto reductase family AC028_12140 PF00135 Carboxylesterase family AC028_12145 PF02347 Glycine cleavage system P-protein AC028_12150 PF07690 Major Facilitator Superfamily AC028_12160 PF01401 Angiotensin-converting enzyme AC028_12165 PF00884 Sulfatase AC028_12165 PF08019 AC028_12165 AC028_12170 PF01569 PAP2 superfamily AC028_12175 PF13231 AC028_12175 AC028_12180 PF00072 Response regulator receiver domain AC028_12180 PF00486 Transcriptional regulatory protein, C terminal AC028_12185 PF00512 His Kinase A (phospho-acceptor) domain AC028_12185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_12195 PF03776 Septum formation topological specificity factor MinE AC028_12200 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AC028_12205 PF03775 Septum formation inhibitor MinC, C-terminal domain AC028_12205 PF05209 Septum formation inhibitor MinC, N-terminal domain AC028_12210 PF00583 Acetyltransferase (GNAT) family AC028_12215 PF07730 Histidine kinase AC028_12220 PF00072 Response regulator receiver domain AC028_12220 PF00196 Bacterial regulatory proteins, luxR family AC028_12225 PF10604 Polyketide cyclase / dehydrase and lipid transport AC028_12235 PF00730 HhH-GPD superfamily base excision DNA repair protein AC028_12240 PF02557 D-alanyl-D-alanine carboxypeptidase AC028_12255 PF01145 SPFH domain / Band 7 family AC028_12260 PF01370 NAD dependent epimerase/dehydratase family AC028_12260 PF02222 ATP-grasp domain AC028_12265 PF03372 Endonuclease/Exonuclease/phosphatase family AC028_12270 PF04376 AC028_12270 AC028_12270 PF04377 AC028_12270 AC028_12275 PF13202 EF hand AC028_12275 PF13499 EF-hand domain pair AC028_12285 PF09413 Domain of unknown function (DUF2007) AC028_12290 PF13622 Thioesterase-like superfamily AC028_12295 PF00378 Enoyl-CoA hydratase/isomerase family AC028_12300 PF04314 Protein of unknown function (DUF461) AC028_12305 PF13279 Thioesterase-like superfamily AC028_12310 PF00005 ABC transporter AC028_12315 PF00829 Ribosomal prokaryotic L21 protein AC028_12320 PF01016 Ribosomal L27 protein AC028_12325 PF01018 GTP1/OBG AC028_12325 PF01926 50S ribosome-binding GTPase AC028_12330 PF01649 Ribosomal protein S20 AC028_12335 PF03023 AC028_12335 AC028_12340 PF01687 Riboflavin kinase AC028_12340 PF06574 FAD synthetase AC028_12345 PF00133 tRNA synthetases class I (I, L, M and V) AC028_12345 PF06827 Zinc finger found in FPG and IleRS AC028_12345 PF08264 Anticodon-binding domain of tRNA AC028_12350 PF01252 AC028_12350 AC028_12355 PF02401 LytB protein AC028_12380 PF13356 Domain of unknown function (DUF4102) AC028_12385 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AC028_12385 PF06481 COX Aromatic Rich Motif AC028_12390 PF00115 Cytochrome C and Quinol oxidase polypeptide I AC028_12395 PF00510 Cytochrome c oxidase subunit III AC028_12400 PF03626 AC028_12400 AC028_12405 PF05299 M61 glycyl aminopeptidase AC028_12405 PF07720 Tetratricopeptide repeat AC028_12410 PF13481 AAA domain AC028_12410 PF13541 Subunit ChlI of Mg-chelatase AC028_12415 PF05656 AC028_12415 AC028_12420 PF00486 Transcriptional regulatory protein, C terminal AC028_12425 PF12833 Helix-turn-helix domain AC028_12430 PF00183 Hsp90 protein AC028_12430 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_12440 PF01740 STAS domain AC028_12440 PF14361 AC028_12440 AC028_12450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_12455 PF07228 Stage II sporulation protein E (SpoIIE) AC028_12455 PF13581 Histidine kinase-like ATPase domain AC028_12460 PF00512 His Kinase A (phospho-acceptor) domain AC028_12460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_12465 PF00072 Response regulator receiver domain AC028_12465 PF00512 His Kinase A (phospho-acceptor) domain AC028_12465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_12465 PF08448 PAS fold AC028_12470 PF04616 Glycosyl hydrolases family 43 AC028_12475 PF00593 TonB dependent receptor AC028_12475 PF07715 TonB-dependent Receptor Plug Domain AC028_12480 PF00085 Thioredoxin AC028_12485 PF07237 Protein of unknown function (DUF1428) AC028_12495 PF00072 Response regulator receiver domain AC028_12495 PF00512 His Kinase A (phospho-acceptor) domain AC028_12495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_12500 PF01339 CheB methylesterase AC028_12505 PF01739 CheR methyltransferase, SAM binding domain AC028_12505 PF03705 CheR methyltransferase, all-alpha domain AC028_12510 PF00072 Response regulator receiver domain AC028_12510 PF00512 His Kinase A (phospho-acceptor) domain AC028_12510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_12510 PF13185 GAF domain AC028_12515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_12515 PF13426 PAS domain AC028_12520 PF00072 Response regulator receiver domain AC028_12525 PF00722 Glycosyl hydrolases family 16 AC028_12530 PF06964 Alpha-L-arabinofuranosidase C-terminus AC028_12540 PF01263 Aldose 1-epimerase AC028_12545 PF01578 AC028_12545 AC028_12550 PF00448 SRP54-type protein, GTPase domain AC028_12550 PF02881 SRP54-type protein, helical bundle domain AC028_12550 PF02978 Signal peptide binding domain AC028_12560 PF03060 Nitronate monooxygenase AC028_12565 PF01063 Aminotransferase class IV AC028_12570 PF00886 Ribosomal protein S16 AC028_12575 PF01782 RimM N-terminal domain AC028_12575 PF05239 PRC-barrel domain AC028_12580 PF01746 tRNA (Guanine-1)-methyltransferase AC028_12585 PF01245 Ribosomal protein L19 AC028_12590 PF01554 MatE AC028_12600 PF08279 HTH domain AC028_12600 PF13280 AC028_12600 AC028_12605 PF00043 Glutathione S-transferase, C-terminal domain AC028_12605 PF13417 Glutathione S-transferase, N-terminal domain AC028_12610 PF01479 S4 domain AC028_12615 PF00141 Peroxidase AC028_12620 PF06078 Bacterial protein of unknown function (DUF937) AC028_12625 PF00488 MutS domain V AC028_12625 PF01624 MutS domain I AC028_12625 PF05188 MutS domain II AC028_12625 PF05190 MutS family domain IV AC028_12625 PF05192 MutS domain III AC028_12630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AC028_12635 PF03301 Tryptophan 2,3-dioxygenase AC028_12645 PF00266 Aminotransferase class-V AC028_12650 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_12665 PF00754 F5/8 type C domain AC028_12665 PF01120 Alpha-L-fucosidase AC028_12675 PF00703 Glycosyl hydrolases family 2 AC028_12675 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AC028_12675 PF02837 Glycosyl hydrolases family 2, sugar binding domain AC028_12675 PF16355 AC028_12675 AC028_12680 PF07745 Glycosyl hydrolase family 53 AC028_12685 PF00593 TonB dependent receptor AC028_12685 PF07715 TonB-dependent Receptor Plug Domain AC028_12690 PF06114 Domain of unknown function (DUF955) AC028_12690 PF09856 AC028_12690 AC028_12690 PF13560 Helix-turn-helix domain AC028_12695 PF00171 Aldehyde dehydrogenase family AC028_12700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_12700 PF02770 Acyl-CoA dehydrogenase, middle domain AC028_12700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_12705 PF00378 Enoyl-CoA hydratase/isomerase family AC028_12710 PF16113 AC028_12710 AC028_12715 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AC028_12715 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AC028_12720 PF01545 Cation efflux family AC028_12725 PF13276 AC028_12725 AC028_12725 PF13683 AC028_12725 AC028_12730 PF01527 Transposase AC028_12740 PF01527 Transposase AC028_12745 PF00665 Integrase core domain AC028_12745 PF13276 AC028_12745 AC028_12750 PF01609 Transposase DDE domain AC028_12755 PF01609 Transposase DDE domain AC028_12755 PF05598 AC028_12755 AC028_12760 PF12760 Transposase zinc-ribbon domain AC028_12760 PF12762 AC028_12760 AC028_12770 PF03033 Glycosyltransferase family 28 N-terminal domain AC028_12775 PF01757 AC028_12775 AC028_12780 PF00106 short chain dehydrogenase AC028_12790 PF05036 Sporulation related domain AC028_12795 PF00750 tRNA synthetases class I (R) AC028_12795 PF03485 Arginyl tRNA synthetase N terminal domain AC028_12795 PF05746 DALR anticodon binding domain AC028_12800 PF04002 RadC-like JAB domain AC028_12805 PF02441 Flavoprotein AC028_12805 PF04127 DNA / pantothenate metabolism flavoprotein AC028_12810 PF00692 dUTPase AC028_12815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AC028_12815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AC028_12815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AC028_12815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AC028_12825 PF07578 Lipid A Biosynthesis N-terminal domain AC028_12830 PF00535 Glycosyl transferase family 2 AC028_12835 PF01370 NAD dependent epimerase/dehydratase family AC028_12845 PF11731 AC028_12845 AC028_12850 PF02195 ParB-like nuclease domain AC028_12855 PF13614 AAA domain AC028_12865 PF00156 Phosphoribosyl transferase domain AC028_12870 PF03372 Endonuclease/Exonuclease/phosphatase family AC028_12875 PF07690 Major Facilitator Superfamily AC028_12885 PF03702 Uncharacterised protein family (UPF0075) AC028_12890 PF01551 Peptidase family M23 AC028_12890 PF04225 Opacity-associated protein A LysM-like domain AC028_12895 PF00579 tRNA synthetases class I (W and Y) AC028_12925 PF00171 Aldehyde dehydrogenase family AC028_12925 PF01619 Proline dehydrogenase AC028_12925 PF14850 DNA-binding domain of Proline dehydrogenase AC028_12930 PF10003 AC028_12930 AC028_12935 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AC028_12935 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AC028_12940 PF00115 Cytochrome C and Quinol oxidase polypeptide I AC028_12950 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AC028_12955 PF00510 Cytochrome c oxidase subunit III AC028_12960 PF11137 AC028_12960 AC028_12965 PF02104 AC028_12965 AC028_12975 PF02628 AC028_12975 AC028_12980 PF01040 UbiA prenyltransferase family AC028_12985 PF13899 Thioredoxin-like AC028_12990 PF13593 SBF-like CPA transporter family (DUF4137) AC028_12995 PF01807 CHC2 zinc finger AC028_12995 PF08275 DNA primase catalytic core, N-terminal domain AC028_12995 PF08278 DNA primase DnaG DnaB-binding AC028_12995 PF10410 DnaB-helicase binding domain of primase AC028_12995 PF13155 Toprim-like AC028_13000 PF03631 AC028_13000 AC028_13005 PF09424 Yqey-like protein AC028_13010 PF01165 Ribosomal protein S21 AC028_13015 PF00814 Glycoprotease family AC028_13020 PF02152 Dihydroneopterin aldolase AC028_13025 PF00933 Glycosyl hydrolase family 3 N terminal domain AC028_13025 PF01915 Glycosyl hydrolase family 3 C-terminal domain AC028_13025 PF14310 Fibronectin type III-like domain AC028_13030 PF07995 Glucose / Sorbosone dehydrogenase AC028_13035 PF05360 AC028_13035 AC028_13050 PF13520 Amino acid permease AC028_13060 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AC028_13060 PF13378 Enolase C-terminal domain-like AC028_13065 PF00877 NlpC/P60 family AC028_13065 PF12913 SH3 domain of the SH3b1 type AC028_13065 PF12914 SH3 domain of SH3b2 type AC028_13070 PF01510 N-acetylmuramoyl-L-alanine amidase AC028_13075 PF01427 D-ala-D-ala dipeptidase AC028_13080 PF14255 AC028_13080 AC028_13090 PF13202 EF hand AC028_13095 PF13202 EF hand AC028_13100 PF13419 Haloacid dehalogenase-like hydrolase AC028_13120 PF07063 Domain of unknown function (DUF1338) AC028_13130 PF06983 3-demethylubiquinone-9 3-methyltransferase AC028_13135 PF00873 AcrB/AcrD/AcrF family AC028_13140 PF00873 AcrB/AcrD/AcrF family AC028_13145 PF16576 AC028_13145 AC028_13150 PF01546 Peptidase family M20/M25/M40 AC028_13150 PF07687 Peptidase dimerisation domain AC028_13155 PF14489 QueF-like protein AC028_13155 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AC028_13170 PF03971 Monomeric isocitrate dehydrogenase AC028_13180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_13180 PF03466 LysR substrate binding domain AC028_13185 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AC028_13190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AC028_13190 PF07497 Rho termination factor, RNA-binding domain AC028_13190 PF07498 Rho termination factor, N-terminal domain AC028_13195 PF00085 Thioredoxin AC028_13200 PF00270 DEAD/DEAH box helicase AC028_13200 PF00271 Helicase conserved C-terminal domain AC028_13200 PF12300 AC028_13200 AC028_13205 PF00005 ABC transporter AC028_13215 PF00072 Response regulator receiver domain AC028_13220 PF03167 Uracil DNA glycosylase superfamily AC028_13225 PF00140 Sigma-70 factor, region 1 AC028_13225 PF04542 Sigma-70 region 2 AC028_13225 PF04545 Sigma-70, region 4 AC028_13230 PF03458 AC028_13230 AC028_13235 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_13245 PF01936 NYN domain AC028_13245 PF12872 OST-HTH/LOTUS domain AC028_13250 PF00043 Glutathione S-transferase, C-terminal domain AC028_13250 PF13417 Glutathione S-transferase, N-terminal domain AC028_13265 PF11304 AC028_13265 AC028_13270 PF12412 AC028_13270 AC028_13275 PF01554 MatE AC028_13280 PF01343 Peptidase family S49 AC028_13295 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_13310 PF01300 Telomere recombination AC028_13315 PF01131 DNA topoisomerase AC028_13315 PF01751 Toprim domain AC028_13315 PF13368 AC028_13315 AC028_13325 PF00114 Pilin (bacterial filament) AC028_13325 PF14237 AC028_13325 AC028_13330 PF04361 AC028_13330 AC028_13335 PF02481 DNA recombination-mediator protein A AC028_13340 PF01476 LysM domain AC028_13345 PF01327 Polypeptide deformylase AC028_13350 PF00551 Formyl transferase AC028_13350 PF02911 Formyl transferase, C-terminal domain AC028_13355 PF01029 NusB family AC028_13355 PF01189 NOL1/NOP2/sun family AC028_13360 PF13231 AC028_13360 AC028_13365 PF04932 AC028_13365 AC028_13370 PF00535 Glycosyl transferase family 2 AC028_13375 PF02350 UDP-N-acetylglucosamine 2-epimerase AC028_13380 PF03703 AC028_13380 AC028_13385 PF03703 AC028_13385 AC028_13390 PF00925 GTP cyclohydrolase II AC028_13400 PF00583 Acetyltransferase (GNAT) family AC028_13405 PF03279 AC028_13405 AC028_13410 PF02580 D-Tyr-tRNA(Tyr) deacylase AC028_13415 PF00140 Sigma-70 factor, region 1 AC028_13415 PF03979 Sigma-70 factor, region 1 AC028_13415 PF04539 Sigma-70 region 3 AC028_13415 PF04542 Sigma-70 region 2 AC028_13415 PF04545 Sigma-70, region 4 AC028_13415 PF04546 Sigma-70, non-essential region AC028_13430 PF00589 Phage integrase family AC028_13435 PF12760 Transposase zinc-ribbon domain AC028_13435 PF12762 AC028_13435 AC028_13445 PF00665 Integrase core domain AC028_13445 PF13276 AC028_13445 AC028_13450 PF01527 Transposase AC028_13460 PF02384 N-6 DNA Methylase AC028_13470 PF12760 Transposase zinc-ribbon domain AC028_13470 PF12762 AC028_13470 AC028_13480 PF01527 Transposase AC028_13485 PF13276 AC028_13485 AC028_13485 PF13683 AC028_13485 AC028_13495 PF06995 AC028_13495 AC028_13500 PF10145 AC028_13500 AC028_13505 PF06528 AC028_13505 AC028_13510 PF10109 AC028_13510 AC028_13515 PF04985 AC028_13515 AC028_13520 PF04984 Phage tail sheath protein AC028_13520 PF17482 AC028_13520 AC028_13525 PF04965 Gene 25-like lysozyme AC028_13530 PF04717 Phage-related baseplate assembly protein AC028_13545 PF09684 AC028_13545 AC028_13550 PF04865 AC028_13550 AC028_13555 PF01527 Transposase AC028_13560 PF00665 Integrase core domain AC028_13560 PF13276 AC028_13560 AC028_13565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_13565 PF00672 HAMP domain AC028_13570 PF12849 PBP superfamily domain AC028_13580 PF01042 Endoribonuclease L-PSP AC028_13585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_13585 PF03466 LysR substrate binding domain AC028_13590 PF00246 Zinc carboxypeptidase AC028_13595 PF00005 ABC transporter AC028_13600 PF12040 AC028_13600 AC028_13600 PF12679 AC028_13600 AC028_13605 PF12040 AC028_13605 AC028_13610 PF00593 TonB dependent receptor AC028_13610 PF07715 TonB-dependent Receptor Plug Domain AC028_13615 PF11445 AC028_13615 AC028_13620 PF00691 OmpA family AC028_13625 PF05650 AC028_13625 AC028_13630 PF11828 AC028_13630 AC028_13645 PF03692 AC028_13645 AC028_13655 PF00107 Zinc-binding dehydrogenase AC028_13655 PF08240 Alcohol dehydrogenase GroES-like domain AC028_13655 PF13823 Alcohol dehydrogenase GroES-associated AC028_13660 PF13628 AC028_13660 AC028_13665 PF12244 AC028_13665 AC028_13670 PF00005 ABC transporter AC028_13670 PF00664 ABC transporter transmembrane region AC028_13680 PF03275 UDP-galactopyranose mutase AC028_13680 PF13450 NAD(P)-binding Rossmann-like domain AC028_13685 PF13692 Glycosyl transferases group 1 AC028_13690 PF16363 AC028_13690 AC028_13695 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_13710 PF02322 AC028_13710 AC028_13715 PF01654 AC028_13715 AC028_13725 PF00072 Response regulator receiver domain AC028_13725 PF00158 Sigma-54 interaction domain AC028_13725 PF02954 Bacterial regulatory protein, Fis family AC028_13735 PF00072 Response regulator receiver domain AC028_13740 PF01339 CheB methylesterase AC028_13740 PF01739 CheR methyltransferase, SAM binding domain AC028_13740 PF03705 CheR methyltransferase, all-alpha domain AC028_13740 PF07536 AC028_13740 AC028_13740 PF08447 PAS fold AC028_13740 PF13596 PAS domain AC028_13760 PF05067 Manganese containing catalase AC028_13765 PF05974 Domain of unknown function (DUF892) AC028_13775 PF01266 FAD dependent oxidoreductase AC028_13780 PF06580 AC028_13780 AC028_13785 PF00072 Response regulator receiver domain AC028_13785 PF04397 LytTr DNA-binding domain AC028_13795 PF13520 Amino acid permease AC028_13805 PF09995 AC028_13805 AC028_13810 PF01431 Peptidase family M13 AC028_13810 PF05649 Peptidase family M13 AC028_13815 PF00535 Glycosyl transferase family 2 AC028_13820 PF00248 Aldo/keto reductase family AC028_13825 PF03358 NADPH-dependent FMN reductase AC028_13830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_13830 PF03466 LysR substrate binding domain AC028_13835 PF07681 AC028_13835 AC028_13840 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AC028_13845 PF04055 Radical SAM superfamily AC028_13850 PF03167 Uracil DNA glycosylase superfamily AC028_13850 PF13566 AC028_13850 AC028_13855 PF02469 Fasciclin domain AC028_13860 PF00999 Sodium/hydrogen exchanger family AC028_13865 PF00005 ABC transporter AC028_13870 PF01061 AC028_13870 AC028_13875 PF11730 AC028_13875 AC028_13885 PF13223 AC028_13885 AC028_13895 PF00691 OmpA family AC028_13895 PF13677 AC028_13895 AC028_13900 PF01618 AC028_13900 AC028_13905 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme AC028_13910 PF01641 SelR domain AC028_13920 PF01037 AsnC family AC028_13920 PF13404 AsnC-type helix-turn-helix domain AC028_13925 PF01266 FAD dependent oxidoreductase AC028_13930 PF00842 Alanine racemase, C-terminal domain AC028_13930 PF01168 Alanine racemase, N-terminal domain AC028_13935 PF11454 AC028_13935 AC028_13950 PF00072 Response regulator receiver domain AC028_13950 PF00512 His Kinase A (phospho-acceptor) domain AC028_13950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_13950 PF08448 PAS fold AC028_13950 PF13426 PAS domain AC028_13955 PF11607 Protein of unknown function (DUF3247) AC028_13960 PF07995 Glucose / Sorbosone dehydrogenase AC028_13970 PF05175 Methyltransferase small domain AC028_13975 PF00849 RNA pseudouridylate synthase AC028_13980 PF13419 Haloacid dehalogenase-like hydrolase AC028_13985 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_13995 PF07209 AC028_13995 AC028_14000 PF00756 Putative esterase AC028_14005 PF00072 Response regulator receiver domain AC028_14005 PF00512 His Kinase A (phospho-acceptor) domain AC028_14005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_14015 PF04461 Protein of unknown function (DUF520) AC028_14020 PF00892 EamA-like transporter family AC028_14025 PF00005 ABC transporter AC028_14025 PF09383 NIL domain AC028_14030 PF00528 Binding-protein-dependent transport system inner membrane component AC028_14035 PF03180 NLPA lipoprotein AC028_14055 PF01609 Transposase DDE domain AC028_14055 PF05598 AC028_14055 AC028_14060 PF03922 OmpW family AC028_14065 PF03167 Uracil DNA glycosylase superfamily AC028_14070 PF11101 AC028_14070 AC028_14075 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AC028_14075 PF00364 Biotin-requiring enzyme AC028_14075 PF02817 e3 binding domain AC028_14085 PF00364 Biotin-requiring enzyme AC028_14085 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AC028_14085 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_14105 PF00119 ATP synthase A chain AC028_14110 PF00137 ATP synthase subunit C AC028_14115 PF00430 ATP synthase B/B' CF(0) AC028_14120 PF00213 ATP synthase delta (OSCP) subunit AC028_14125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AC028_14125 PF00306 ATP synthase alpha/beta chain, C terminal domain AC028_14125 PF02874 ATP synthase alpha/beta family, beta-barrel domain AC028_14130 PF00231 ATP synthase AC028_14135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AC028_14135 PF02874 ATP synthase alpha/beta family, beta-barrel domain AC028_14140 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AC028_14140 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AC028_14150 PF01817 Chorismate mutase type II AC028_14155 PF04138 AC028_14155 AC028_14160 PF00132 Bacterial transferase hexapeptide (six repeats) AC028_14160 PF12804 MobA-like NTP transferase domain AC028_14160 PF14602 Hexapeptide repeat of succinyl-transferase AC028_14165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_14170 PF00072 Response regulator receiver domain AC028_14170 PF00158 Sigma-54 interaction domain AC028_14170 PF02954 Bacterial regulatory protein, Fis family AC028_14175 PF14534 Domain of unknown function (DUF4440) AC028_14180 PF02687 AC028_14180 AC028_14185 PF02687 AC028_14185 AC028_14185 PF12704 MacB-like periplasmic core domain AC028_14190 PF01609 Transposase DDE domain AC028_14190 PF05598 AC028_14190 AC028_14195 PF00005 ABC transporter AC028_14200 PF16576 AC028_14200 AC028_14205 PF01380 SIS domain AC028_14205 PF13522 Glutamine amidotransferase domain AC028_14220 PF01471 Putative peptidoglycan binding domain AC028_14230 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AC028_14235 PF05275 AC028_14235 AC028_14240 PF00394 Multicopper oxidase AC028_14240 PF07731 Multicopper oxidase AC028_14240 PF07732 Multicopper oxidase AC028_14250 PF00291 Pyridoxal-phosphate dependent enzyme AC028_14255 PF01432 Peptidase family M3 AC028_14270 PF07977 FabA-like domain AC028_14275 PF00817 impB/mucB/samB family AC028_14275 PF11799 impB/mucB/samB family C-terminal domain AC028_14280 PF13419 Haloacid dehalogenase-like hydrolase AC028_14285 PF00593 TonB dependent receptor AC028_14285 PF07715 TonB-dependent Receptor Plug Domain AC028_14290 PF00756 Putative esterase AC028_14295 PF04994 TfoX C-terminal domain AC028_14300 PF13185 GAF domain AC028_14305 PF13500 AAA domain AC028_14310 PF09361 AC028_14310 AC028_14320 PF12760 Transposase zinc-ribbon domain AC028_14320 PF12762 AC028_14320 AC028_14330 PF13557 AC028_14330 AC028_14335 PF01242 6-pyruvoyl tetrahydropterin synthase AC028_14340 PF00593 TonB dependent receptor AC028_14340 PF07715 TonB-dependent Receptor Plug Domain AC028_14345 PF02225 PA domain AC028_14345 PF04253 Transferrin receptor-like dimerisation domain AC028_14345 PF04389 Peptidase family M28 AC028_14350 PF00270 DEAD/DEAH box helicase AC028_14350 PF00271 Helicase conserved C-terminal domain AC028_14355 PF01557 Fumarylacetoacetate (FAA) hydrolase family AC028_14360 PF13417 Glutathione S-transferase, N-terminal domain AC028_14365 PF00437 Type II/IV secretion system protein AC028_14370 PF14346 Domain of unknown function (DUF4398) AC028_14380 PF04325 Protein of unknown function (DUF465) AC028_14385 PF00291 Pyridoxal-phosphate dependent enzyme AC028_14385 PF00571 CBS domain AC028_14390 PF01053 Cys/Met metabolism PLP-dependent enzyme AC028_14400 PF00534 Glycosyl transferases group 1 AC028_14400 PF13439 Glycosyltransferase Family 4 AC028_14405 PF01061 AC028_14405 AC028_14410 PF00005 ABC transporter AC028_14410 PF14524 Wzt C-terminal domain AC028_14415 PF13847 Methyltransferase domain AC028_14425 PF00534 Glycosyl transferases group 1 AC028_14425 PF13579 Glycosyl transferase 4-like domain AC028_14430 PF16363 AC028_14430 AC028_14435 PF01370 NAD dependent epimerase/dehydratase family AC028_14445 PF01527 Transposase AC028_14455 PF13276 AC028_14455 AC028_14455 PF13683 AC028_14455 AC028_14460 PF01527 Transposase AC028_14465 PF12760 Transposase zinc-ribbon domain AC028_14465 PF12762 AC028_14465 AC028_14475 PF04138 AC028_14475 AC028_14480 PF01593 Flavin containing amine oxidoreductase AC028_14485 PF01370 NAD dependent epimerase/dehydratase family AC028_14490 PF00106 short chain dehydrogenase AC028_14495 PF01565 FAD binding domain AC028_14500 PF01040 UbiA prenyltransferase family AC028_14505 PF03706 AC028_14505 AC028_14510 PF00766 Electron transfer flavoprotein FAD-binding domain AC028_14510 PF01012 Electron transfer flavoprotein domain AC028_14515 PF01012 Electron transfer flavoprotein domain AC028_14520 PF16363 AC028_14520 AC028_14525 PF00483 Nucleotidyl transferase AC028_14530 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AC028_14535 PF04321 RmlD substrate binding domain AC028_14540 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AC028_14540 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AC028_14540 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AC028_14545 PF00483 Nucleotidyl transferase AC028_14545 PF01050 Mannose-6-phosphate isomerase AC028_14550 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AC028_14550 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AC028_14550 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AC028_14550 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AC028_14555 PF01144 Coenzyme A transferase AC028_14560 PF01144 Coenzyme A transferase AC028_14565 PF01946 Thi4 family AC028_14565 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase AC028_14570 PF13532 2OG-Fe(II) oxygenase superfamily AC028_14575 PF03886 Protein of unknown function (DUF330) AC028_14580 PF02470 AC028_14580 AC028_14585 PF00005 ABC transporter AC028_14590 PF02405 AC028_14590 AC028_14595 PF06738 AC028_14595 AC028_14595 PF12821 AC028_14595 AC028_14600 PF12760 Transposase zinc-ribbon domain AC028_14600 PF12762 AC028_14600 AC028_14610 PF00589 Phage integrase family AC028_14610 PF13356 Domain of unknown function (DUF4102) AC028_14610 PF14659 Phage integrase, N-terminal SAM-like domain AC028_14615 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) AC028_14620 PF01433 Peptidase family M1 AC028_14620 PF12679 AC028_14620 AC028_14625 PF00005 ABC transporter AC028_14630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AC028_14635 PF00324 Amino acid permease AC028_14640 PF02574 Homocysteine S-methyltransferase AC028_14645 PF05960 Bacterial protein of unknown function (DUF885) AC028_14650 PF02592 AC028_14650 AC028_14655 PF04367 AC028_14655 AC028_14665 PF13372 Alginate export AC028_14670 PF03551 Transcriptional regulator PadR-like family AC028_14675 PF13796 AC028_14675 AC028_14680 PF06850 AC028_14680 AC028_14685 PF13489 Methyltransferase domain AC028_14690 PF03653 AC028_14690 AC028_14700 PF14559 Tetratricopeptide repeat AC028_14705 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AC028_14710 PF01336 OB-fold nucleic acid binding domain AC028_14710 PF02811 PHP domain AC028_14710 PF07733 Bacterial DNA polymerase III alpha subunit AC028_14710 PF14579 Helix-hairpin-helix motif AC028_14715 PF01351 Ribonuclease HII AC028_14720 PF02684 AC028_14720 AC028_14725 PF00132 Bacterial transferase hexapeptide (six repeats) AC028_14725 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AC028_14730 PF07977 FabA-like domain AC028_14735 PF00132 Bacterial transferase hexapeptide (six repeats) AC028_14735 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AC028_14745 PF01103 Surface antigen AC028_14745 PF07244 Surface antigen variable number repeat AC028_14750 PF02163 Peptidase family M50 AC028_14755 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AC028_14755 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AC028_14755 PF13288 DXP reductoisomerase C-terminal domain AC028_14760 PF01148 Cytidylyltransferase family AC028_14765 PF01255 Putative undecaprenyl diphosphate synthase AC028_14770 PF01765 Ribosome recycling factor AC028_14775 PF00696 Amino acid kinase family AC028_14780 PF00990 GGDEF domain AC028_14780 PF08668 HDOD domain AC028_14785 PF00889 Elongation factor TS AC028_14790 PF00318 Ribosomal protein S2 AC028_14795 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AC028_14805 PF05229 AC028_14805 AC028_14810 PF00577 Outer membrane usher protein AC028_14810 PF13953 PapC C-terminal domain AC028_14815 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AC028_14820 PF05229 AC028_14820 AC028_14825 PF00557 Metallopeptidase family M24 AC028_14830 PF01909 Nucleotidyltransferase domain AC028_14830 PF01966 HD domain AC028_14830 PF08335 GlnD PII-uridylyltransferase AC028_14835 PF00132 Bacterial transferase hexapeptide (six repeats) AC028_14835 PF14602 Hexapeptide repeat of succinyl-transferase AC028_14835 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AC028_14840 PF03960 ArsC family AC028_14845 PF01546 Peptidase family M20/M25/M40 AC028_14845 PF07687 Peptidase dimerisation domain AC028_14850 PF00733 Asparagine synthase AC028_14850 PF13537 Glutamine amidotransferase domain AC028_14855 PF13229 Right handed beta helix region AC028_14860 PF00593 TonB dependent receptor AC028_14860 PF07715 TonB-dependent Receptor Plug Domain AC028_14865 PF01804 Penicillin amidase AC028_14870 PF00210 Ferritin-like domain AC028_14875 PF05724 Thiopurine S-methyltransferase (TPMT) AC028_14880 PF00521 DNA gyrase/topoisomerase IV, subunit A AC028_14880 PF03989 DNA gyrase C-terminal domain, beta-propeller AC028_14885 PF02311 AraC-like ligand binding domain AC028_14885 PF12833 Helix-turn-helix domain AC028_14890 PF01047 MarR family AC028_14895 PF02321 Outer membrane efflux protein AC028_14900 PF00529 HlyD family secretion protein AC028_14900 PF16576 AC028_14900 AC028_14905 PF07690 Major Facilitator Superfamily AC028_14915 PF00933 Glycosyl hydrolase family 3 N terminal domain AC028_14915 PF01915 Glycosyl hydrolase family 3 C-terminal domain AC028_14915 PF14310 Fibronectin type III-like domain AC028_14920 PF00246 Zinc carboxypeptidase AC028_14930 PF01694 Rhomboid family AC028_14940 PF14542 GCN5-related N-acetyl-transferase AC028_14950 PF01047 MarR family AC028_14955 PF01432 Peptidase family M3 AC028_14960 PF00255 Glutathione peroxidase AC028_14965 PF00175 Oxidoreductase NAD-binding domain AC028_14965 PF00970 Oxidoreductase FAD-binding domain AC028_14970 PF00005 ABC transporter AC028_14975 PF05681 AC028_14975 AC028_14975 PF05683 Fumarase C-terminus AC028_14980 PF02798 Glutathione S-transferase, N-terminal domain AC028_14980 PF14497 Glutathione S-transferase, C-terminal domain AC028_14985 PF00484 Carbonic anhydrase AC028_14990 PF02253 Phospholipase A1 AC028_14995 PF04306 AC028_14995 AC028_15000 PF00313 'Cold-shock' DNA-binding domain AC028_15005 PF05433 AC028_15005 AC028_15015 PF00899 ThiF family AC028_15020 PF01026 TatD related DNase AC028_15030 PF05433 AC028_15030 AC028_15035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15035 PF02770 Acyl-CoA dehydrogenase, middle domain AC028_15035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_15040 PF01841 Transglutaminase-like superfamily AC028_15040 PF12969 Domain of Unknown Function with PDB structure (DUF3857) AC028_15045 PF00043 Glutathione S-transferase, C-terminal domain AC028_15045 PF02798 Glutathione S-transferase, N-terminal domain AC028_15055 PF00733 Asparagine synthase AC028_15055 PF13537 Glutamine amidotransferase domain AC028_15060 PF03358 NADPH-dependent FMN reductase AC028_15065 PF00772 DnaB-like helicase N terminal domain AC028_15065 PF03796 DnaB-like helicase C terminal domain AC028_15070 PF00875 DNA photolyase AC028_15070 PF03441 FAD binding domain of DNA photolyase AC028_15075 PF00691 OmpA family AC028_15075 PF13488 AC028_15075 AC028_15080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_15080 PF03466 LysR substrate binding domain AC028_15090 PF00106 short chain dehydrogenase AC028_15095 PF16576 AC028_15095 AC028_15100 PF00873 AcrB/AcrD/AcrF family AC028_15105 PF00106 short chain dehydrogenase AC028_15110 PF02321 Outer membrane efflux protein AC028_15115 PF00990 GGDEF domain AC028_15135 PF00733 Asparagine synthase AC028_15155 PF01695 IstB-like ATP binding protein AC028_15155 PF08483 AC028_15155 AC028_15160 PF00665 Integrase core domain AC028_15175 PF01129 NAD:arginine ADP-ribosyltransferase AC028_15185 PF12760 Transposase zinc-ribbon domain AC028_15185 PF12762 AC028_15185 AC028_15190 PF01609 Transposase DDE domain AC028_15200 PF04542 Sigma-70 region 2 AC028_15200 PF08281 Sigma-70, region 4 AC028_15205 PF04773 FecR protein AC028_15205 PF16220 AC028_15205 AC028_15210 PF07715 TonB-dependent Receptor Plug Domain AC028_15215 PF01527 Transposase AC028_15220 PF00665 Integrase core domain AC028_15220 PF13276 AC028_15220 AC028_15230 PF00593 TonB dependent receptor AC028_15230 PF07715 TonB-dependent Receptor Plug Domain AC028_15235 PF12760 Transposase zinc-ribbon domain AC028_15235 PF12762 AC028_15235 AC028_15245 PF01609 Transposase DDE domain AC028_15245 PF05598 AC028_15245 AC028_15250 PF12760 Transposase zinc-ribbon domain AC028_15250 PF12762 AC028_15250 AC028_15260 PF01609 Transposase DDE domain AC028_15260 PF05598 AC028_15260 AC028_15265 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AC028_15265 PF06594 AC028_15265 AC028_15270 PF03193 Protein of unknown function, DUF258 AC028_15280 PF01965 DJ-1/PfpI family AC028_15285 PF00128 Alpha amylase, catalytic domain AC028_15290 PF00593 TonB dependent receptor AC028_15290 PF07715 TonB-dependent Receptor Plug Domain AC028_15295 PF07690 Major Facilitator Superfamily AC028_15300 PF00356 Bacterial regulatory proteins, lacI family AC028_15300 PF13377 Periplasmic binding protein-like domain AC028_15305 PF01609 Transposase DDE domain AC028_15305 PF05598 AC028_15305 AC028_15310 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_15315 PF03600 Citrate transporter AC028_15320 PF07396 Phosphate-selective porin O and P AC028_15325 PF00072 Response regulator receiver domain AC028_15325 PF00486 Transcriptional regulatory protein, C terminal AC028_15330 PF00512 His Kinase A (phospho-acceptor) domain AC028_15330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_15330 PF08521 AC028_15330 AC028_15335 PF13531 Bacterial extracellular solute-binding protein AC028_15340 PF00072 Response regulator receiver domain AC028_15340 PF00196 Bacterial regulatory proteins, luxR family AC028_15345 PF11512 Agrobacterium tumefaciens protein Atu4866 AC028_15350 PF12680 SnoaL-like domain AC028_15355 PF00248 Aldo/keto reductase family AC028_15365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_15365 PF03466 LysR substrate binding domain AC028_15370 PF13531 Bacterial extracellular solute-binding protein AC028_15375 PF07690 Major Facilitator Superfamily AC028_15380 PF00072 Response regulator receiver domain AC028_15380 PF00512 His Kinase A (phospho-acceptor) domain AC028_15380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_15380 PF02743 Cache domain AC028_15380 PF12860 AC028_15380 AC028_15385 PF07396 Phosphate-selective porin O and P AC028_15390 PF00375 Sodium:dicarboxylate symporter family AC028_15395 PF00390 Malic enzyme, N-terminal domain AC028_15395 PF01515 Phosphate acetyl/butaryl transferase AC028_15395 PF03949 Malic enzyme, NAD binding domain AC028_15400 PF07971 Glycosyl hydrolase family 92 AC028_15405 PF01381 Helix-turn-helix AC028_15410 PF13437 HlyD family secretion protein AC028_15415 PF12760 Transposase zinc-ribbon domain AC028_15415 PF12762 AC028_15415 AC028_15425 PF13276 AC028_15425 AC028_15425 PF13683 AC028_15425 AC028_15430 PF01527 Transposase AC028_15445 PF00082 Subtilase family AC028_15450 PF01668 SmpB protein AC028_15455 PF03364 Polyketide cyclase / dehydrase and lipid transport AC028_15460 PF03658 RnfH family Ubiquitin AC028_15465 PF04355 SmpA / OmlA family AC028_15470 PF01475 Ferric uptake regulator family AC028_15475 PF02463 RecF/RecN/SMC N terminal domain AC028_15480 PF01628 HrcA protein C terminal domain AC028_15480 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AC028_15485 PF01025 GrpE AC028_15490 PF00012 Hsp70 protein AC028_15495 PF00226 DnaJ domain AC028_15495 PF00684 DnaJ central domain AC028_15495 PF01556 DnaJ C terminal domain AC028_15500 PF08543 Phosphomethylpyrimidine kinase AC028_15505 PF01842 ACT domain AC028_15505 PF02153 Prephenate dehydrogenase AC028_15515 PF02321 Outer membrane efflux protein AC028_15520 PF16576 AC028_15520 AC028_15530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_15530 PF03466 LysR substrate binding domain AC028_15535 PF00005 ABC transporter AC028_15535 PF00664 ABC transporter transmembrane region AC028_15540 PF01205 Uncharacterized protein family UPF0029 AC028_15540 PF09186 Domain of unknown function (DUF1949) AC028_15545 PF03641 Possible lysine decarboxylase AC028_15550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AC028_15550 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_15555 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AC028_15555 PF00364 Biotin-requiring enzyme AC028_15555 PF02817 e3 binding domain AC028_15560 PF00676 Dehydrogenase E1 component AC028_15560 PF02779 Transketolase, pyrimidine binding domain AC028_15560 PF16078 AC028_15560 AC028_15560 PF16870 AC028_15560 AC028_15565 PF13673 Acetyltransferase (GNAT) domain AC028_15570 PF08007 Cupin superfamily protein AC028_15575 PF01527 Transposase AC028_15580 PF00665 Integrase core domain AC028_15580 PF13276 AC028_15580 AC028_15585 PF01527 Transposase AC028_15590 PF00665 Integrase core domain AC028_15590 PF13276 AC028_15590 AC028_15600 PF00206 Lyase AC028_15600 PF08328 Adenylosuccinate lyase C-terminal AC028_15605 PF00571 CBS domain AC028_15605 PF01595 AC028_15605 AC028_15605 PF03471 Transporter associated domain AC028_15610 PF00206 Lyase AC028_15610 PF10415 Fumarase C C-terminus AC028_15620 PF11101 AC028_15620 AC028_15635 PF00005 ABC transporter AC028_15640 PF00392 Bacterial regulatory proteins, gntR family AC028_15645 PF00255 Glutathione peroxidase AC028_15650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AC028_15650 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AC028_15655 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AC028_15655 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AC028_15655 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AC028_15660 PF04102 SlyX AC028_15665 PF09831 AC028_15665 AC028_15670 PF13557 AC028_15670 AC028_15675 PF00356 Bacterial regulatory proteins, lacI family AC028_15675 PF13377 Periplasmic binding protein-like domain AC028_15680 PF07690 Major Facilitator Superfamily AC028_15685 PF00294 pfkB family carbohydrate kinase AC028_15690 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) AC028_15695 PF00809 Pterin binding enzyme AC028_15695 PF02310 B12 binding domain AC028_15695 PF02607 B12 binding domain AC028_15695 PF02965 Vitamin B12 dependent methionine synthase, activation domain AC028_15700 PF02574 Homocysteine S-methyltransferase AC028_15705 PF01022 Bacterial regulatory protein, arsR family AC028_15705 PF08241 Methyltransferase domain AC028_15710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15710 PF02770 Acyl-CoA dehydrogenase, middle domain AC028_15710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_15715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_15755 PF13472 GDSL-like Lipase/Acylhydrolase family AC028_15765 PF00575 S1 RNA binding domain AC028_15765 PF00773 RNB domain AC028_15765 PF08206 Ribonuclease B OB domain AC028_15775 PF12760 Transposase zinc-ribbon domain AC028_15775 PF12762 AC028_15775 AC028_15785 PF00588 SpoU rRNA Methylase family AC028_15785 PF08032 RNA 2'-O ribose methyltransferase substrate binding AC028_15790 PF00990 GGDEF domain AC028_15790 PF07494 Two component regulator propeller AC028_15790 PF07495 Y_Y_Y domain AC028_15795 PF00929 Exonuclease AC028_15800 PF11776 Domain of unknown function (DUF3315) AC028_15805 PF01895 PhoU domain AC028_15810 PF00005 ABC transporter AC028_15815 PF00528 Binding-protein-dependent transport system inner membrane component AC028_15820 PF00528 Binding-protein-dependent transport system inner membrane component AC028_15825 PF12849 PBP superfamily domain AC028_15830 PF12849 PBP superfamily domain AC028_15835 PF07396 Phosphate-selective porin O and P AC028_15845 PF00484 Carbonic anhydrase AC028_15850 PF00916 AC028_15850 AC028_15855 PF00633 Helix-hairpin-helix motif AC028_15855 PF00730 HhH-GPD superfamily base excision DNA repair protein AC028_15865 PF00378 Enoyl-CoA hydratase/isomerase family AC028_15870 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AC028_15870 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AC028_15875 PF00293 NUDIX domain AC028_15875 PF06945 AC028_15875 AC028_15880 PF00581 Rhodanese-like domain AC028_15885 PF07920 Protein of unknown function (DUF1684) AC028_15890 PF01510 N-acetylmuramoyl-L-alanine amidase AC028_15895 PF03473 MOSC domain AC028_15900 PF05728 Uncharacterised protein family (UPF0227) AC028_15905 PF00583 Acetyltransferase (GNAT) family AC028_15910 PF00005 ABC transporter AC028_15915 PF01170 Putative RNA methylase family UPF0020 AC028_15915 PF02926 THUMP domain AC028_15915 PF10672 S-adenosylmethionine-dependent methyltransferase AC028_15920 PF01513 ATP-NAD kinase AC028_15925 PF06189 AC028_15925 AC028_15930 PF11159 AC028_15930 AC028_15935 PF09365 AC028_15935 AC028_15940 PF00929 Exonuclease AC028_15940 PF08411 Exonuclease C-terminal AC028_15945 PF01494 FAD binding domain AC028_15950 PF00266 Aminotransferase class-V AC028_15955 PF12805 AC028_15955 AC028_15955 PF13515 AC028_15955 AC028_15960 PF06052 3-hydroxyanthranilic acid dioxygenase AC028_15965 PF00484 Carbonic anhydrase AC028_15970 PF05838 Glycosyl hydrolase 108 AC028_15970 PF09374 Predicted Peptidoglycan domain AC028_15975 PF11655 AC028_15975 AC028_15980 PF11655 AC028_15980 AC028_16010 PF00072 Response regulator receiver domain AC028_16010 PF00196 Bacterial regulatory proteins, luxR family AC028_16020 PF00161 Ribosome inactivating protein AC028_16030 PF04299 Putative FMN-binding domain AC028_16050 PF00152 tRNA synthetases class II (D, K and N) AC028_16050 PF01336 OB-fold nucleic acid binding domain AC028_16055 PF01521 Iron-sulphur cluster biosynthesis AC028_16060 PF01250 Ribosomal protein S6 AC028_16065 PF01084 Ribosomal protein S18 AC028_16070 PF01281 Ribosomal protein L9, N-terminal domain AC028_16070 PF03948 Ribosomal protein L9, C-terminal domain AC028_16075 PF00756 Putative esterase AC028_16080 PF02463 RecF/RecN/SMC N terminal domain AC028_16085 PF04354 ZipA, C-terminal FtsZ-binding domain AC028_16100 PF00533 BRCA1 C Terminus (BRCT) domain AC028_16100 PF01653 NAD-dependent DNA ligase adenylation domain AC028_16100 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AC028_16100 PF03120 NAD-dependent DNA ligase OB-fold domain AC028_16100 PF12826 Helix-hairpin-helix motif AC028_16105 PF00152 tRNA synthetases class II (D, K and N) AC028_16110 PF11218 AC028_16110 AC028_16115 PF01008 Initiation factor 2 subunit family AC028_16120 PF00521 DNA gyrase/topoisomerase IV, subunit A AC028_16120 PF03989 DNA gyrase C-terminal domain, beta-propeller AC028_16125 PF01011 PQQ enzyme repeat AC028_16125 PF13360 PQQ-like domain AC028_16135 PF01175 Urocanase AC028_16135 PF17391 AC028_16135 AC028_16135 PF17392 AC028_16135 AC028_16140 PF05013 N-formylglutamate amidohydrolase AC028_16145 PF00221 Aromatic amino acid lyase AC028_16150 PF07969 Amidohydrolase family AC028_16155 PF01979 Amidohydrolase family AC028_16165 PF00392 Bacterial regulatory proteins, gntR family AC028_16165 PF07702 UTRA domain AC028_16175 PF05597 AC028_16175 AC028_16180 PF09650 AC028_16180 AC028_16185 PF16697 AC028_16185 AC028_16190 PF01794 AC028_16190 AC028_16195 PF00174 Oxidoreductase molybdopterin binding domain AC028_16200 PF00266 Aminotransferase class-V AC028_16205 PF00800 Prephenate dehydratase AC028_16205 PF01817 Chorismate mutase type II AC028_16205 PF01842 ACT domain AC028_16210 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AC028_16215 PF03544 Gram-negative bacterial TonB protein C-terminal AC028_16220 PF03544 Gram-negative bacterial TonB protein C-terminal AC028_16225 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AC028_16225 PF02403 Seryl-tRNA synthetase N-terminal domain AC028_16230 PF02525 Flavodoxin-like fold AC028_16235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_16235 PF03466 LysR substrate binding domain AC028_16245 PF04343 AC028_16245 AC028_16250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_16250 PF12729 AC028_16250 AC028_16255 PF01494 FAD binding domain AC028_16260 PF01047 MarR family AC028_16275 PF00072 Response regulator receiver domain AC028_16275 PF00512 His Kinase A (phospho-acceptor) domain AC028_16275 PF00989 PAS fold AC028_16275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_16275 PF08447 PAS fold AC028_16275 PF08448 PAS fold AC028_16280 PF00072 Response regulator receiver domain AC028_16285 PF06745 KaiC AC028_16290 PF00072 Response regulator receiver domain AC028_16290 PF00512 His Kinase A (phospho-acceptor) domain AC028_16290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_16290 PF08448 PAS fold AC028_16300 PF03918 Cytochrome C biogenesis protein AC028_16305 PF08534 Redoxin AC028_16310 PF01578 AC028_16310 AC028_16310 PF16327 AC028_16310 AC028_16315 PF03100 CcmE AC028_16320 PF04995 AC028_16320 AC028_16325 PF01578 AC028_16325 AC028_16330 PF00082 Subtilase family AC028_16335 PF13490 Putative zinc-finger AC028_16340 PF04542 Sigma-70 region 2 AC028_16340 PF08281 Sigma-70, region 4 AC028_16350 PF00034 Cytochrome c AC028_16360 PF01292 Prokaryotic cytochrome b561 AC028_16365 PF05523 WxcM-like, C-terminal AC028_16370 PF00132 Bacterial transferase hexapeptide (six repeats) AC028_16380 PF13480 Acetyltransferase (GNAT) domain AC028_16385 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AC028_16390 PF13440 AC028_16390 AC028_16395 PF00535 Glycosyl transferase family 2 AC028_16405 PF02706 Chain length determinant protein AC028_16410 PF13649 Methyltransferase domain AC028_16415 PF01979 Amidohydrolase family AC028_16420 PF08241 Methyltransferase domain AC028_16425 PF00534 Glycosyl transferases group 1 AC028_16425 PF13439 Glycosyltransferase Family 4 AC028_16430 PF00534 Glycosyl transferases group 1 AC028_16430 PF13579 Glycosyl transferase 4-like domain AC028_16435 PF14907 Uncharacterised nucleotidyltransferase AC028_16440 PF02310 B12 binding domain AC028_16440 PF04055 Radical SAM superfamily AC028_16450 PF00005 ABC transporter AC028_16455 PF00083 Sugar (and other) transporter AC028_16460 PF00296 Luciferase-like monooxygenase AC028_16465 PF16242 AC028_16465 AC028_16470 PF06055 AC028_16470 AC028_16475 PF00571 CBS domain AC028_16475 PF01595 AC028_16475 AC028_16475 PF03471 Transporter associated domain AC028_16480 PF01865 Protein of unknown function DUF47 AC028_16485 PF01384 AC028_16485 AC028_16490 PF02698 DUF218 domain AC028_16495 PF00450 Serine carboxypeptidase AC028_16500 PF00204 DNA gyrase B AC028_16500 PF00986 DNA gyrase B subunit, carboxyl terminus AC028_16500 PF01751 Toprim domain AC028_16500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_16510 PF00117 Glutamine amidotransferase class-I AC028_16510 PF06418 CTP synthase N-terminus AC028_16515 PF00793 DAHP synthetase I family AC028_16525 PF00113 Enolase, C-terminal TIM barrel domain AC028_16525 PF03952 Enolase, N-terminal domain AC028_16530 PF04977 Septum formation initiator AC028_16535 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AC028_16540 PF02542 YgbB family AC028_16545 PF01142 tRNA pseudouridine synthase D (TruD) AC028_16550 PF01713 Smr domain AC028_16555 PF01975 Survival protein SurE AC028_16560 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AC028_16570 PF01476 LysM domain AC028_16570 PF01551 Peptidase family M23 AC028_16575 PF04430 Protein of unknown function (DUF498/DUF598) AC028_16580 PF01985 CRS1 / YhbY (CRM) domain AC028_16585 PF01728 FtsJ-like methyltransferase AC028_16590 PF00004 ATPase family associated with various cellular activities (AAA) AC028_16590 PF01434 Peptidase family M41 AC028_16590 PF06480 FtsH Extracellular AC028_16595 PF00809 Pterin binding enzyme AC028_16600 PF01715 IPP transferase AC028_16605 PF17209 AC028_16605 AC028_16610 PF01926 50S ribosome-binding GTPase AC028_16610 PF13167 AC028_16610 AC028_16610 PF16360 AC028_16610 AC028_16615 PF02464 Competence-damaged protein AC028_16620 PF03109 AC028_16620 AC028_16625 PF00717 Peptidase S24-like AC028_16625 PF01726 LexA DNA binding domain AC028_16630 PF00154 recA bacterial DNA recombination protein AC028_16635 PF02631 RecX family AC028_16640 PF01411 tRNA synthetases class II (A) AC028_16640 PF02272 DHHA1 domain AC028_16640 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AC028_16645 PF02599 Global regulator protein family AC028_16655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_16655 PF08447 PAS fold AC028_16660 PF02678 Pirin AC028_16670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_16670 PF03466 LysR substrate binding domain AC028_16675 PF00581 Rhodanese-like domain AC028_16675 PF09335 AC028_16675 AC028_16690 PF12146 Putative lysophospholipase AC028_16695 PF08543 Phosphomethylpyrimidine kinase AC028_16700 PF06912 AC028_16700 AC028_16710 PF02562 PhoH-like protein AC028_16710 PF13638 PIN domain AC028_16715 PF00578 AhpC/TSA family AC028_16720 PF06877 Regulator of ribonuclease activity B AC028_16725 PF13740 ACT domain AC028_16730 PF00701 Dihydrodipicolinate synthetase family AC028_16740 PF00037 4Fe-4S binding domain AC028_16740 PF11953 Domain of unknown function (DUF3470) AC028_16745 PF05035 2-keto-3-deoxy-galactonokinase AC028_16750 PF08450 SMP-30/Gluconolaconase/LRE-like region AC028_16755 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AC028_16755 PF13378 Enolase C-terminal domain-like AC028_16760 PF01081 KDPG and KHG aldolase AC028_16770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_16770 PF03466 LysR substrate binding domain AC028_16775 PF00593 TonB dependent receptor AC028_16775 PF07715 TonB-dependent Receptor Plug Domain AC028_16780 PF00593 TonB dependent receptor AC028_16780 PF07715 TonB-dependent Receptor Plug Domain AC028_16790 PF03629 Domain of unknown function (DUF303) AC028_16790 PF13364 Beta-galactosidase jelly roll domain AC028_16795 PF02449 Beta-galactosidase AC028_16800 PF01055 Glycosyl hydrolases family 31 AC028_16800 PF07691 PA14 domain AC028_16800 PF16338 AC028_16800 AC028_16800 PF17137 AC028_16800 AC028_16805 PF14498 Glycosyl hydrolase family 65, N-terminal domain AC028_16810 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AC028_16810 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AC028_16820 PF00083 Sugar (and other) transporter AC028_16825 PF05231 AC028_16825 AC028_16835 PF12760 Transposase zinc-ribbon domain AC028_16835 PF12762 AC028_16835 AC028_16845 PF02649 Type I GTP cyclohydrolase folE2 AC028_16855 PF01743 Poly A polymerase head domain AC028_16855 PF12626 Polymerase A arginine-rich C-terminus AC028_16855 PF12627 Probable RNA and SrmB- binding site of polymerase A AC028_16860 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AC028_16865 PF02548 Ketopantoate hydroxymethyltransferase AC028_16870 PF02569 Pantoate-beta-alanine ligase AC028_16875 PF02261 Aspartate decarboxylase AC028_16880 PF00342 Phosphoglucose isomerase AC028_16885 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AC028_16895 PF05787 Bacterial protein of unknown function (DUF839) AC028_16900 PF00933 Glycosyl hydrolase family 3 N terminal domain AC028_16900 PF01915 Glycosyl hydrolase family 3 C-terminal domain AC028_16905 PF00474 Sodium:solute symporter family AC028_16910 PF00563 EAL domain AC028_16910 PF00990 GGDEF domain AC028_16910 PF01590 GAF domain AC028_16915 PF00150 Cellulase (glycosyl hydrolase family 5) AC028_16920 PF00072 Response regulator receiver domain AC028_16920 PF02954 Bacterial regulatory protein, Fis family AC028_16925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_16930 PF04551 GcpE protein AC028_16935 PF01569 PAP2 superfamily AC028_16940 PF07690 Major Facilitator Superfamily AC028_16945 PF01177 Asp/Glu/Hydantoin racemase AC028_16950 PF00892 EamA-like transporter family AC028_16955 PF01565 FAD binding domain AC028_16955 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AC028_16960 PF01180 Dihydroorotate dehydrogenase AC028_16965 PF08241 Methyltransferase domain AC028_16970 PF13828 AC028_16970 AC028_16975 PF00171 Aldehyde dehydrogenase family AC028_16985 PF01609 Transposase DDE domain AC028_16985 PF05598 AC028_16985 AC028_16990 PF01527 Transposase AC028_16995 PF13276 AC028_16995 AC028_16995 PF13683 AC028_16995 AC028_17005 PF00696 Amino acid kinase family AC028_17005 PF00742 Homoserine dehydrogenase AC028_17005 PF03447 Homoserine dehydrogenase, NAD binding domain AC028_17005 PF13840 ACT domain AC028_17010 PF00288 GHMP kinases N terminal domain AC028_17010 PF08544 GHMP kinases C terminal AC028_17015 PF07110 EthD domain AC028_17020 PF00291 Pyridoxal-phosphate dependent enzyme AC028_17020 PF14821 Threonine synthase N terminus AC028_17025 PF13645 AC028_17025 AC028_17030 PF00027 Cyclic nucleotide-binding domain AC028_17030 PF13545 Crp-like helix-turn-helix domain AC028_17035 PF03129 Anticodon binding domain AC028_17035 PF13393 Histidyl-tRNA synthetase AC028_17040 PF01371 Trp repressor protein AC028_17045 PF01634 ATP phosphoribosyltransferase AC028_17045 PF08029 HisG, C-terminal domain AC028_17050 PF00815 Histidinol dehydrogenase AC028_17055 PF00155 Aminotransferase class I and II AC028_17060 PF00475 Imidazoleglycerol-phosphate dehydratase AC028_17060 PF13242 HAD-hyrolase-like AC028_17065 PF00117 Glutamine amidotransferase class-I AC028_17070 PF00977 Histidine biosynthesis protein AC028_17075 PF00977 Histidine biosynthesis protein AC028_17080 PF01502 Phosphoribosyl-AMP cyclohydrolase AC028_17080 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AC028_17085 PF00149 Calcineurin-like phosphoesterase AC028_17085 PF16370 AC028_17085 AC028_17085 PF16371 AC028_17085 AC028_17090 PF01650 Peptidase C13 family AC028_17095 PF12760 Transposase zinc-ribbon domain AC028_17095 PF12762 AC028_17095 AC028_17105 PF03079 ARD/ARD' family AC028_17110 PF00596 Class II Aldolase and Adducin N-terminal domain AC028_17115 PF13520 Amino acid permease AC028_17120 PF13520 Amino acid permease AC028_17125 PF00293 NUDIX domain AC028_17130 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AC028_17130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AC028_17135 PF01565 FAD binding domain AC028_17135 PF02913 FAD linked oxidases, C-terminal domain AC028_17140 PF09498 AC028_17140 AC028_17145 PF13387 AC028_17145 AC028_17155 PF01132 Elongation factor P (EF-P) OB domain AC028_17155 PF08207 Elongation factor P (EF-P) KOW-like domain AC028_17155 PF09285 Elongation factor P, C-terminal AC028_17160 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_17165 PF00682 HMGL-like AC028_17170 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AC028_17175 PF00378 Enoyl-CoA hydratase/isomerase family AC028_17180 PF04023 FeoA domain AC028_17185 PF02421 Ferrous iron transport protein B AC028_17185 PF07664 AC028_17185 AC028_17185 PF07670 Nucleoside recognition AC028_17200 PF00155 Aminotransferase class I and II AC028_17205 PF03473 MOSC domain AC028_17205 PF03475 3-alpha domain AC028_17210 PF01113 Dihydrodipicolinate reductase, N-terminus AC028_17210 PF05173 Dihydrodipicolinate reductase, C-terminus AC028_17215 PF00117 Glutamine amidotransferase class-I AC028_17215 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AC028_17225 PF02142 MGS-like domain AC028_17225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AC028_17225 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AC028_17230 PF01272 Transcription elongation factor, GreA/GreB, C-term AC028_17230 PF03449 Transcription elongation factor, N-terminal AC028_17240 PF01368 DHH family AC028_17240 PF02272 DHHA1 domain AC028_17245 PF01757 AC028_17245 AC028_17250 PF04397 LytTr DNA-binding domain AC028_17255 PF00472 RF-1 domain AC028_17255 PF03462 PCRF domain AC028_17260 PF00152 tRNA synthetases class II (D, K and N) AC028_17260 PF01336 OB-fold nucleic acid binding domain AC028_17265 PF00072 Response regulator receiver domain AC028_17265 PF01966 HD domain AC028_17275 PF00072 Response regulator receiver domain AC028_17275 PF00512 His Kinase A (phospho-acceptor) domain AC028_17275 PF01627 Hpt domain AC028_17275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_17280 PF00378 Enoyl-CoA hydratase/isomerase family AC028_17300 PF00330 Aconitase family (aconitate hydratase) AC028_17300 PF00694 Aconitase C-terminal domain AC028_17305 PF04014 Antidote-toxin recognition MazE AC028_17310 PF01850 PIN domain AC028_17315 PF00330 Aconitase family (aconitate hydratase) AC028_17315 PF06434 Aconitate hydratase 2 N-terminus AC028_17315 PF11791 Aconitate B N-terminal domain AC028_17320 PF00561 alpha/beta hydrolase fold AC028_17325 PF00563 EAL domain AC028_17325 PF00990 GGDEF domain AC028_17325 PF13185 GAF domain AC028_17325 PF13426 PAS domain AC028_17330 PF00072 Response regulator receiver domain AC028_17330 PF01339 CheB methylesterase AC028_17335 PF03975 CheD chemotactic sensory transduction AC028_17340 PF01739 CheR methyltransferase, SAM binding domain AC028_17340 PF03705 CheR methyltransferase, all-alpha domain AC028_17345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17345 PF00672 HAMP domain AC028_17345 PF12729 AC028_17345 AC028_17355 PF01584 CheW-like domain AC028_17360 PF07238 PilZ domain AC028_17360 PF07317 Flagellar regulator YcgR AC028_17365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17365 PF17201 AC028_17365 AC028_17370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17370 PF00672 HAMP domain AC028_17370 PF12729 AC028_17370 AC028_17375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17375 PF00672 HAMP domain AC028_17375 PF12729 AC028_17375 AC028_17380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17380 PF00672 HAMP domain AC028_17385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17385 PF12729 AC028_17385 AC028_17395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17395 PF00672 HAMP domain AC028_17395 PF05227 CHASE3 domain AC028_17405 PF12760 Transposase zinc-ribbon domain AC028_17405 PF12762 AC028_17405 AC028_17410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17415 PF13557 AC028_17415 AC028_17420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17420 PF00672 HAMP domain AC028_17420 PF02743 Cache domain AC028_17425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17425 PF17200 AC028_17425 AC028_17440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17440 PF00672 HAMP domain AC028_17440 PF12729 AC028_17440 AC028_17445 PF01584 CheW-like domain AC028_17445 PF01627 Hpt domain AC028_17445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_17445 PF02895 Signal transducing histidine kinase, homodimeric domain AC028_17450 PF00072 Response regulator receiver domain AC028_17455 PF13466 STAS domain AC028_17460 PF01584 CheW-like domain AC028_17465 PF13614 AAA domain AC028_17470 PF00691 OmpA family AC028_17470 PF13677 AC028_17470 AC028_17475 PF01618 AC028_17475 AC028_17485 PF00593 TonB dependent receptor AC028_17485 PF07715 TonB-dependent Receptor Plug Domain AC028_17490 PF12760 Transposase zinc-ribbon domain AC028_17490 PF12762 AC028_17490 AC028_17500 PF01527 Transposase AC028_17505 PF00665 Integrase core domain AC028_17505 PF13276 AC028_17505 AC028_17515 PF12760 Transposase zinc-ribbon domain AC028_17515 PF12762 AC028_17515 AC028_17525 PF08845 AC028_17525 AC028_17545 PF01584 CheW-like domain AC028_17545 PF01627 Hpt domain AC028_17545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_17545 PF02895 Signal transducing histidine kinase, homodimeric domain AC028_17550 PF04344 Chemotaxis phosphatase, CheZ AC028_17555 PF00072 Response regulator receiver domain AC028_17560 PF04539 Sigma-70 region 3 AC028_17560 PF04542 Sigma-70 region 2 AC028_17560 PF04545 Sigma-70, region 4 AC028_17565 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AC028_17570 PF00448 SRP54-type protein, GTPase domain AC028_17575 PF00771 FHIPEP family AC028_17580 PF01312 FlhB HrpN YscU SpaS Family AC028_17585 PF00563 EAL domain AC028_17585 PF00990 GGDEF domain AC028_17585 PF03707 AC028_17585 AC028_17590 PF00990 GGDEF domain AC028_17605 PF01311 AC028_17605 AC028_17610 PF01313 AC028_17610 AC028_17615 PF12760 Transposase zinc-ribbon domain AC028_17615 PF12762 AC028_17615 AC028_17620 PF00813 AC028_17620 AC028_17625 PF04347 AC028_17625 AC028_17630 PF01052 Surface presentation of antigens (SPOA) AC028_17635 PF01052 Surface presentation of antigens (SPOA) AC028_17635 PF02154 Flagellar motor switch protein FliM AC028_17640 PF03748 AC028_17640 AC028_17645 PF02120 Flagellar hook-length control protein FliK AC028_17650 PF02050 Flagellar FliJ protein AC028_17655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AC028_17660 PF02108 AC028_17660 AC028_17665 PF01706 FliG C-terminal domain AC028_17665 PF14841 FliG middle domain AC028_17665 PF14842 FliG N-terminal domain AC028_17670 PF01514 Secretory protein of YscJ/FliF family AC028_17670 PF08345 AC028_17670 AC028_17675 PF02049 AC028_17675 AC028_17680 PF00535 Glycosyl transferase family 2 AC028_17685 PF12760 Transposase zinc-ribbon domain AC028_17685 PF12762 AC028_17685 AC028_17690 PF00665 Integrase core domain AC028_17690 PF13276 AC028_17690 AC028_17695 PF01527 Transposase AC028_17710 PF00132 Bacterial transferase hexapeptide (six repeats) AC028_17720 PF12760 Transposase zinc-ribbon domain AC028_17720 PF12762 AC028_17720 AC028_17725 PF00355 Rieske [2Fe-2S] domain AC028_17730 PF00132 Bacterial transferase hexapeptide (six repeats) AC028_17735 PF01609 Transposase DDE domain AC028_17735 PF05598 AC028_17735 AC028_17745 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_17750 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AC028_17750 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AC028_17760 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AC028_17765 PF00158 Sigma-54 interaction domain AC028_17765 PF02954 Bacterial regulatory protein, Fis family AC028_17765 PF06490 AC028_17765 AC028_17770 PF00072 Response regulator receiver domain AC028_17775 PF00309 AC028_17775 AC028_17775 PF04552 Sigma-54, DNA binding domain AC028_17775 PF04963 Sigma-54 factor, core binding domain AC028_17780 PF00072 Response regulator receiver domain AC028_17780 PF00196 Bacterial regulatory proteins, luxR family AC028_17785 PF16823 AC028_17785 AC028_17795 PF02561 Flagellar protein FliS AC028_17800 PF02465 AC028_17800 AC028_17800 PF07195 AC028_17800 AC028_17800 PF07196 Flagellin hook IN motif AC028_17805 PF00669 Bacterial flagellin N-terminal helical region AC028_17805 PF00700 Bacterial flagellin C-terminal helical region AC028_17805 PF07196 Flagellin hook IN motif AC028_17810 PF00669 Bacterial flagellin N-terminal helical region AC028_17810 PF00700 Bacterial flagellin C-terminal helical region AC028_17815 PF00460 Flagella basal body rod protein AC028_17815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AC028_17820 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AC028_17820 PF10135 AC028_17820 AC028_17825 PF02119 AC028_17825 AC028_17830 PF02107 AC028_17830 AC028_17835 PF00460 Flagella basal body rod protein AC028_17835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AC028_17840 PF00460 Flagella basal body rod protein AC028_17840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AC028_17845 PF00460 Flagella basal body rod protein AC028_17845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AC028_17845 PF07559 Flagellar basal body protein FlaE AC028_17850 PF03963 AC028_17850 AC028_17850 PF13860 FlgD Ig-like domain AC028_17850 PF13861 FlgD Tudor-like domain AC028_17855 PF00460 Flagella basal body rod protein AC028_17855 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AC028_17860 PF00460 Flagella basal body rod protein AC028_17865 PF00072 Response regulator receiver domain AC028_17865 PF01584 CheW-like domain AC028_17870 PF13144 SAF-like AC028_17875 PF04316 Anti-sigma-28 factor, FlgM AC028_17885 PF00512 His Kinase A (phospho-acceptor) domain AC028_17885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_17890 PF00072 Response regulator receiver domain AC028_17890 PF00563 EAL domain AC028_17890 PF00990 GGDEF domain AC028_17895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_17895 PF07730 Histidine kinase AC028_17895 PF08448 PAS fold AC028_17895 PF13426 PAS domain AC028_17900 PF00563 EAL domain AC028_17900 PF00990 GGDEF domain AC028_17900 PF08447 PAS fold AC028_17900 PF13426 PAS domain AC028_17910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_17915 PF04356 Protein of unknown function (DUF489) AC028_17920 PF03054 tRNA methyl transferase AC028_17925 PF00293 NUDIX domain AC028_17930 PF02617 ATP-dependent Clp protease adaptor protein ClpS AC028_17935 PF00004 ATPase family associated with various cellular activities (AAA) AC028_17935 PF02861 Clp amino terminal domain AC028_17935 PF07724 AAA domain (Cdc48 subfamily) AC028_17935 PF10431 C-terminal, D2-small domain, of ClpB protein AC028_17940 PF01176 Translation initiation factor 1A / IF-1 AC028_17945 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AC028_17950 PF04339 AC028_17950 AC028_17955 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_17960 PF01580 FtsK/SpoIIIE family AC028_17960 PF09397 Ftsk gamma domain AC028_17960 PF13491 AC028_17960 AC028_17965 PF01841 Transglutaminase-like superfamily AC028_17965 PF12969 Domain of Unknown Function with PDB structure (DUF3857) AC028_17970 PF03548 Outer membrane lipoprotein carrier protein LolA AC028_17980 PF00004 ATPase family associated with various cellular activities (AAA) AC028_17980 PF12002 MgsA AAA+ ATPase C terminal AC028_17980 PF16193 AC028_17980 AC028_17985 PF02537 AC028_17985 AC028_17990 PF00108 Thiolase, N-terminal domain AC028_17990 PF02803 Thiolase, C-terminal domain AC028_17995 PF00378 Enoyl-CoA hydratase/isomerase family AC028_17995 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AC028_17995 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AC028_18000 PF00440 Bacterial regulatory proteins, tetR family AC028_18005 PF00334 Nucleoside diphosphate kinase AC028_18010 PF04055 Radical SAM superfamily AC028_18015 PF13432 Tetratricopeptide repeat AC028_18020 PF13413 Helix-turn-helix domain AC028_18020 PF13464 AC028_18020 AC028_18025 PF09976 Tetratricopeptide repeat AC028_18030 PF13360 PQQ-like domain AC028_18035 PF01926 50S ribosome-binding GTPase AC028_18035 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AC028_18040 PF00994 Probable molybdopterin binding domain AC028_18040 PF03453 MoeA N-terminal region (domain I and II) AC028_18040 PF03454 MoeA C-terminal region (domain IV) AC028_18045 PF00581 Rhodanese-like domain AC028_18045 PF00899 ThiF family AC028_18050 PF00593 TonB dependent receptor AC028_18050 PF07715 TonB-dependent Receptor Plug Domain AC028_18060 PF13628 AC028_18060 AC028_18070 PF00107 Zinc-binding dehydrogenase AC028_18070 PF08240 Alcohol dehydrogenase GroES-like domain AC028_18070 PF13823 Alcohol dehydrogenase GroES-associated AC028_18075 PF06884 AC028_18075 AC028_18080 PF03372 Endonuclease/Exonuclease/phosphatase family AC028_18085 PF04193 PQ loop repeat AC028_18090 PF00994 Probable molybdopterin binding domain AC028_18090 PF03453 MoeA N-terminal region (domain I and II) AC028_18090 PF03454 MoeA C-terminal region (domain IV) AC028_18095 PF12804 MobA-like NTP transferase domain AC028_18105 PF12625 AC028_18105 AC028_18105 PF12833 Helix-turn-helix domain AC028_18110 PF00106 short chain dehydrogenase AC028_18115 PF00743 Flavin-binding monooxygenase-like AC028_18120 PF00561 alpha/beta hydrolase fold AC028_18125 PF01566 AC028_18125 AC028_18130 PF01325 Iron dependent repressor, N-terminal DNA binding domain AC028_18130 PF02742 Iron dependent repressor, metal binding and dimerisation domain AC028_18135 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AC028_18140 PF00929 Exonuclease AC028_18145 PF00924 Mechanosensitive ion channel AC028_18150 PF00391 PEP-utilising enzyme, mobile domain AC028_18150 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AC028_18150 PF02896 PEP-utilising enzyme, TIM barrel domain AC028_18155 PF03618 AC028_18155 AC028_18160 PF06853 AC028_18160 AC028_18165 PF00293 NUDIX domain AC028_18170 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_18175 PF01066 CDP-alcohol phosphatidyltransferase AC028_18180 PF09712 AC028_18180 AC028_18185 PF00561 alpha/beta hydrolase fold AC028_18190 PF04024 AC028_18190 AC028_18200 PF01266 FAD dependent oxidoreductase AC028_18210 PF00575 S1 RNA binding domain AC028_18210 PF09371 Tex-like protein N-terminal domain AC028_18210 PF12836 Helix-hairpin-helix motif AC028_18210 PF16921 AC028_18210 AC028_18220 PF00072 Response regulator receiver domain AC028_18260 PF00034 Cytochrome c AC028_18265 PF00034 Cytochrome c AC028_18270 PF00529 HlyD family secretion protein AC028_18270 PF16576 AC028_18270 AC028_18275 PF00873 AcrB/AcrD/AcrF family AC028_18280 PF00873 AcrB/AcrD/AcrF family AC028_18285 PF01081 KDPG and KHG aldolase AC028_18290 PF00920 Dehydratase family AC028_18295 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AC028_18300 PF02685 Glucokinase AC028_18305 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AC028_18305 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AC028_18310 PF00005 ABC transporter AC028_18310 PF08402 TOBE domain AC028_18315 PF01571 Aminomethyltransferase folate-binding domain AC028_18315 PF08669 Glycine cleavage T-protein C-terminal barrel domain AC028_18320 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AC028_18325 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AC028_18330 PF00890 FAD binding domain AC028_18330 PF02910 Fumarate reductase flavoprotein C-term AC028_18340 PF13085 2Fe-2S iron-sulfur cluster binding domain AC028_18340 PF13534 4Fe-4S dicluster domain AC028_18345 PF03937 Flavinator of succinate dehydrogenase AC028_18355 PF02687 AC028_18355 AC028_18355 PF12704 MacB-like periplasmic core domain AC028_18360 PF00005 ABC transporter AC028_18365 PF01370 NAD dependent epimerase/dehydratase family AC028_18370 PF00753 Metallo-beta-lactamase superfamily AC028_18370 PF03772 AC028_18370 AC028_18370 PF13567 AC028_18370 AC028_18375 PF01618 AC028_18375 AC028_18380 PF02472 Biopolymer transport protein ExbD/TolR AC028_18385 PF00005 ABC transporter AC028_18385 PF00664 ABC transporter transmembrane region AC028_18390 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AC028_18395 PF02348 Cytidylyltransferase AC028_18400 PF01451 Low molecular weight phosphotyrosine protein phosphatase AC028_18410 PF01527 Transposase AC028_18415 PF00665 Integrase core domain AC028_18415 PF13276 AC028_18415 AC028_18425 PF01541 GIY-YIG catalytic domain AC028_18425 PF02151 UvrB/uvrC motif AC028_18425 PF08459 UvrC Helix-hairpin-helix N-terminal AC028_18430 PF01066 CDP-alcohol phosphatidyltransferase AC028_18455 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AC028_18455 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AC028_18455 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AC028_18460 PF03486 HI0933-like protein AC028_18465 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AC028_18475 PF00581 Rhodanese-like domain AC028_18480 PF00072 Response regulator receiver domain AC028_18480 PF00196 Bacterial regulatory proteins, luxR family AC028_18490 PF00849 RNA pseudouridylate synthase AC028_18490 PF01479 S4 domain AC028_18495 PF11737 AC028_18495 AC028_18500 PF02535 AC028_18500 AC028_18505 PF03544 Gram-negative bacterial TonB protein C-terminal AC028_18510 PF01329 Pterin 4 alpha carbinolamine dehydratase AC028_18515 PF01106 NifU-like domain AC028_18535 PF01471 Putative peptidoglycan binding domain AC028_18535 PF13406 Transglycosylase SLT domain AC028_18540 PF01526 AC028_18540 AC028_18540 PF13700 AC028_18540 AC028_18550 PF11740 AC028_18550 AC028_18555 PF12760 Transposase zinc-ribbon domain AC028_18555 PF12762 AC028_18555 AC028_18560 PF12760 Transposase zinc-ribbon domain AC028_18560 PF12762 AC028_18560 AC028_18570 PF00072 Response regulator receiver domain AC028_18570 PF07536 AC028_18570 AC028_18570 PF08447 PAS fold AC028_18575 PF12588 AC028_18575 AC028_18580 PF09836 Uncharacterized protein conserved in bacteria (DUF2063) AC028_18585 PF01609 Transposase DDE domain AC028_18585 PF05598 AC028_18585 AC028_18590 PF03992 Antibiotic biosynthesis monooxygenase AC028_18595 PF12760 Transposase zinc-ribbon domain AC028_18595 PF12762 AC028_18595 AC028_18605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_18605 PF03466 LysR substrate binding domain AC028_18610 PF03022 Major royal jelly protein AC028_18615 PF01527 Transposase AC028_18635 PF12375 AC028_18635 AC028_18640 PF13561 Enoyl-(Acyl carrier protein) reductase AC028_18645 PF00732 GMC oxidoreductase AC028_18645 PF05199 GMC oxidoreductase AC028_18650 PF12697 Alpha/beta hydrolase family AC028_18655 PF00535 Glycosyl transferase family 2 AC028_18660 PF05401 Nodulation protein S (NodS) AC028_18665 PF02585 GlcNAc-PI de-N-acetylase AC028_18670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_18675 PF01596 O-methyltransferase AC028_18680 PF04940 Sensors of blue-light using FAD AC028_18685 PF12760 Transposase zinc-ribbon domain AC028_18685 PF12762 AC028_18685 AC028_18690 PF00563 EAL domain AC028_18695 PF07081 Protein of unknown function (DUF1349) AC028_18705 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AC028_18710 PF05974 Domain of unknown function (DUF892) AC028_18715 PF10685 AC028_18715 AC028_18725 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AC028_18725 PF10414 Sirohaem synthase dimerisation region AC028_18725 PF13241 Putative NAD(P)-binding AC028_18725 PF14824 Sirohaem biosynthesis protein central AC028_18740 PF05977 Transmembrane secretion effector AC028_18745 PF07969 Amidohydrolase family AC028_18750 PF07681 AC028_18750 AC028_18755 PF00857 Isochorismatase family AC028_18760 PF12833 Helix-turn-helix domain AC028_18765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_18765 PF07495 Y_Y_Y domain AC028_18765 PF07730 Histidine kinase AC028_18775 PF17201 AC028_18775 AC028_18795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_18795 PF03466 LysR substrate binding domain AC028_18800 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AC028_18800 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AC028_18805 PF10070 AC028_18805 AC028_18825 PF00665 Integrase core domain AC028_18825 PF13276 AC028_18825 AC028_18830 PF01527 Transposase AC028_18845 PF12760 Transposase zinc-ribbon domain AC028_18845 PF12762 AC028_18845 AC028_18850 PF08843 Nucleotidyl transferase of unknown function (DUF1814) AC028_18855 PF11459 AC028_18855 AC028_18855 PF17194 AC028_18855 AC028_18860 PF00589 Phage integrase family AC028_18860 PF13356 Domain of unknown function (DUF4102) AC028_18865 PF00117 Glutamine amidotransferase class-I AC028_18865 PF00958 GMP synthase C terminal domain AC028_18865 PF02540 NAD synthase AC028_18870 PF00478 IMP dehydrogenase / GMP reductase domain AC028_18870 PF00571 CBS domain AC028_18875 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AC028_18875 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AC028_18880 PF06844 Protein of unknown function (DUF1244) AC028_18885 PF00999 Sodium/hydrogen exchanger family AC028_18885 PF02254 TrkA-N domain AC028_18890 PF00483 Nucleotidyl transferase AC028_18895 PF02719 Polysaccharide biosynthesis protein AC028_18895 PF13727 CoA-binding domain AC028_18900 PF00953 Glycosyl transferase family 4 AC028_18905 PF13432 Tetratricopeptide repeat AC028_18910 PF06305 AC028_18910 AC028_18915 PF00216 Bacterial DNA-binding protein AC028_18920 PF00575 S1 RNA binding domain AC028_18925 PF02224 Cytidylate kinase AC028_18930 PF00444 Ribosomal protein L36 AC028_18940 PF04371 Porphyromonas-type peptidyl-arginine deiminase AC028_18945 PF00795 Carbon-nitrogen hydrolase AC028_18950 PF13420 Acetyltransferase (GNAT) domain AC028_18955 PF01963 AC028_18955 AC028_18960 PF03372 Endonuclease/Exonuclease/phosphatase family AC028_18965 PF00754 F5/8 type C domain AC028_18965 PF06202 Amylo-alpha-1,6-glucosidase AC028_18970 PF00528 Binding-protein-dependent transport system inner membrane component AC028_18975 PF00528 Binding-protein-dependent transport system inner membrane component AC028_18980 PF13416 Bacterial extracellular solute-binding protein AC028_18985 PF10091 Putative glucoamylase AC028_18990 PF00593 TonB dependent receptor AC028_18990 PF13620 Carboxypeptidase regulatory-like domain AC028_18995 PF00356 Bacterial regulatory proteins, lacI family AC028_18995 PF13377 Periplasmic binding protein-like domain AC028_19000 PF01722 BolA-like protein AC028_19005 PF03795 YCII-related domain AC028_19010 PF02616 ScpA/B protein AC028_19015 PF04079 Putative transcriptional regulators (Ypuh-like) AC028_19020 PF00849 RNA pseudouridylate synthase AC028_19020 PF01479 S4 domain AC028_19030 PF05096 Glutamine cyclotransferase AC028_19035 PF00795 Carbon-nitrogen hydrolase AC028_19040 PF00155 Aminotransferase class I and II AC028_19045 PF00005 ABC transporter AC028_19050 PF03379 AC028_19050 AC028_19055 PF01578 AC028_19055 AC028_19060 PF04995 AC028_19060 AC028_19065 PF03100 CcmE AC028_19070 PF01578 AC028_19070 AC028_19070 PF16327 AC028_19070 AC028_19075 PF08534 Redoxin AC028_19080 PF03918 Cytochrome C biogenesis protein AC028_19085 PF13432 Tetratricopeptide repeat AC028_19090 PF00561 alpha/beta hydrolase fold AC028_19095 PF00313 'Cold-shock' DNA-binding domain AC028_19095 PF06961 AC028_19095 AC028_19100 PF00005 ABC transporter AC028_19105 PF00005 ABC transporter AC028_19105 PF00664 ABC transporter transmembrane region AC028_19110 PF01654 AC028_19110 AC028_19115 PF02322 AC028_19115 AC028_19120 PF08173 AC028_19120 AC028_19140 PF04796 AC028_19140 AC028_19145 PF01381 Helix-turn-helix AC028_19150 PF00004 ATPase family associated with various cellular activities (AAA) AC028_19155 PF00082 Subtilase family AC028_19160 PF01609 Transposase DDE domain AC028_19175 PF12760 Transposase zinc-ribbon domain AC028_19175 PF12762 AC028_19175 AC028_19215 PF01551 Peptidase family M23 AC028_19235 PF00589 Phage integrase family AC028_19240 PF07690 Major Facilitator Superfamily AC028_19245 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AC028_19245 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AC028_19250 PF14498 Glycosyl hydrolase family 65, N-terminal domain AC028_19255 PF00171 Aldehyde dehydrogenase family AC028_19260 PF00696 Amino acid kinase family AC028_19260 PF01472 PUA domain AC028_19265 PF03795 YCII-related domain AC028_19270 PF00206 Lyase AC028_19275 PF01118 Semialdehyde dehydrogenase, NAD binding domain AC028_19280 PF13302 Acetyltransferase (GNAT) domain AC028_19285 PF00696 Amino acid kinase family AC028_19285 PF04768 Protein of unknown function (DUF619) AC028_19290 PF01546 Peptidase family M20/M25/M40 AC028_19290 PF07687 Peptidase dimerisation domain AC028_19295 PF13508 Acetyltransferase (GNAT) domain AC028_19300 PF00764 Arginosuccinate synthase AC028_19305 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AC028_19305 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AC028_19315 PF01406 tRNA synthetases class I (C) catalytic domain AC028_19315 PF09190 DALR domain AC028_19320 PF02657 Fe-S metabolism associated domain AC028_19325 PF05977 Transmembrane secretion effector AC028_19330 PF01258 Prokaryotic dksA/traR C4-type zinc finger AC028_19340 PF01809 AC028_19340 AC028_19345 PF01979 Amidohydrolase family AC028_19350 PF01551 Peptidase family M23 AC028_19355 PF13520 Amino acid permease AC028_19360 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AC028_19365 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AC028_19375 PF00753 Metallo-beta-lactamase superfamily AC028_19380 PF16242 AC028_19380 AC028_19390 PF12760 Transposase zinc-ribbon domain AC028_19390 PF12762 AC028_19390 AC028_19395 PF00295 Glycosyl hydrolases family 28 AC028_19405 PF13419 Haloacid dehalogenase-like hydrolase AC028_19410 PF12760 Transposase zinc-ribbon domain AC028_19410 PF12762 AC028_19410 AC028_19415 PF13489 Methyltransferase domain AC028_19420 PF01979 Amidohydrolase family AC028_19430 PF01132 Elongation factor P (EF-P) OB domain AC028_19430 PF08207 Elongation factor P (EF-P) KOW-like domain AC028_19430 PF09285 Elongation factor P, C-terminal AC028_19435 PF13353 4Fe-4S single cluster domain AC028_19440 PF00563 EAL domain AC028_19440 PF00672 HAMP domain AC028_19440 PF00990 GGDEF domain AC028_19440 PF17203 AC028_19440 AC028_19445 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein AC028_19450 PF00588 SpoU rRNA Methylase family AC028_19455 PF00459 Inositol monophosphatase family AC028_19460 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AC028_19460 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AC028_19465 PF00545 ribonuclease AC028_19470 PF01337 Barstar (barnase inhibitor) AC028_19475 PF00005 ABC transporter AC028_19475 PF12848 ABC transporter AC028_19475 PF16326 AC028_19475 AC028_19480 PF00270 DEAD/DEAH box helicase AC028_19480 PF00271 Helicase conserved C-terminal domain AC028_19480 PF03880 DbpA RNA binding domain AC028_19485 PF00156 Phosphoribosyl transferase domain AC028_19490 PF02696 AC028_19490 AC028_19495 PF00135 Carboxylesterase family AC028_19500 PF00043 Glutathione S-transferase, C-terminal domain AC028_19500 PF02798 Glutathione S-transferase, N-terminal domain AC028_19505 PF00313 'Cold-shock' DNA-binding domain AC028_19510 PF07152 YaeQ protein AC028_19515 PF03486 HI0933-like protein AC028_19520 PF00563 EAL domain AC028_19520 PF00990 GGDEF domain AC028_19520 PF13188 PAS domain AC028_19525 PF01435 Peptidase family M48 AC028_19530 PF00749 tRNA synthetases class I (E and Q), catalytic domain AC028_19535 PF00106 short chain dehydrogenase AC028_19540 PF05233 AC028_19540 AC028_19540 PF07879 AC028_19540 AC028_19545 PF01963 AC028_19545 AC028_19550 PF07920 Protein of unknown function (DUF1684) AC028_19560 PF01520 N-acetylmuramoyl-L-alanine amidase AC028_19560 PF11741 AMIN domain AC028_19565 PF02367 Uncharacterised P-loop hydrolase UPF0079 AC028_19570 PF01256 Carbohydrate kinase AC028_19570 PF03853 YjeF-related protein N-terminus AC028_19575 PF08331 AC028_19575 AC028_19575 PF13484 AC028_19575 AC028_19580 PF02601 AC028_19580 AC028_19580 PF13742 AC028_19580 AC028_19585 PF06057 Bacterial virulence protein (VirJ) AC028_19590 PF03781 Sulfatase-modifying factor enzyme 1 AC028_19595 PF00570 HRDC domain AC028_19595 PF01612 3'-5' exonuclease AC028_19600 PF01068 ATP dependent DNA ligase domain AC028_19600 PF04679 ATP dependent DNA ligase C terminal region AC028_19600 PF13298 DNA polymerase Ligase (LigD) AC028_19605 PF12244 AC028_19605 AC028_19610 PF00816 H-NS histone family AC028_19625 PF00990 GGDEF domain AC028_19630 PF01584 CheW-like domain AC028_19635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_19635 PF00672 HAMP domain AC028_19635 PF12729 AC028_19635 AC028_19640 PF02245 Methylpurine-DNA glycosylase (MPG) AC028_19645 PF00270 DEAD/DEAH box helicase AC028_19645 PF00271 Helicase conserved C-terminal domain AC028_19645 PF08494 AC028_19645 AC028_19650 PF11743 AC028_19650 AC028_19660 PF04386 Stringent starvation protein B AC028_19665 PF00043 Glutathione S-transferase, C-terminal domain AC028_19665 PF13417 Glutathione S-transferase, N-terminal domain AC028_19670 PF02167 Cytochrome C1 family AC028_19675 PF00032 Cytochrome b(C-terminal)/b6/petD AC028_19675 PF00033 Cytochrome b(N-terminal)/b6/petB AC028_19680 PF00355 Rieske [2Fe-2S] domain AC028_19680 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AC028_19685 PF01464 Transglycosylase SLT domain AC028_19690 PF08279 HTH domain AC028_19690 PF13280 AC028_19690 AC028_19700 PF00919 Uncharacterized protein family UPF0004 AC028_19700 PF01938 TRAM domain AC028_19700 PF04055 Radical SAM superfamily AC028_19705 PF02562 PhoH-like protein AC028_19715 PF02130 Uncharacterized protein family UPF0054 AC028_19725 PF00571 CBS domain AC028_19725 PF03471 Transporter associated domain AC028_19730 PF13387 AC028_19730 AC028_19735 PF01544 CorA-like Mg2+ transporter protein AC028_19740 PF00171 Aldehyde dehydrogenase family AC028_19750 PF00528 Binding-protein-dependent transport system inner membrane component AC028_19755 PF00528 Binding-protein-dependent transport system inner membrane component AC028_19760 PF00005 ABC transporter AC028_19760 PF08402 TOBE domain AC028_19765 PF02321 Outer membrane efflux protein AC028_19770 PF07690 Major Facilitator Superfamily AC028_19775 PF13533 Biotin-lipoyl like AC028_19775 PF16576 AC028_19775 AC028_19780 PF13416 Bacterial extracellular solute-binding protein AC028_19785 PF00202 Aminotransferase class-III AC028_19790 PF00120 Glutamine synthetase, catalytic domain AC028_19795 PF07722 Peptidase C26 AC028_19800 PF00120 Glutamine synthetase, catalytic domain AC028_19805 PF01266 FAD dependent oxidoreductase AC028_19810 PF00072 Response regulator receiver domain AC028_19810 PF00990 GGDEF domain AC028_19815 PF01814 Hemerythrin HHE cation binding domain AC028_19820 PF00083 Sugar (and other) transporter AC028_19825 PF12760 Transposase zinc-ribbon domain AC028_19825 PF12762 AC028_19825 AC028_19835 PF00384 Molybdopterin oxidoreductase AC028_19835 PF01568 Molydopterin dinucleotide binding domain AC028_19840 PF02634 FdhD/NarQ family AC028_19845 PF07690 Major Facilitator Superfamily AC028_19860 PF04286 AC028_19860 AC028_19865 PF00072 Response regulator receiver domain AC028_19865 PF00512 His Kinase A (phospho-acceptor) domain AC028_19865 PF01627 Hpt domain AC028_19865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_19865 PF03924 CHASE domain AC028_19865 PF13426 PAS domain AC028_19870 PF00072 Response regulator receiver domain AC028_19870 PF13487 HD domain AC028_19875 PF07690 Major Facilitator Superfamily AC028_19905 PF05088 AC028_19905 AC028_19905 PF12466 AC028_19905 AC028_19910 PF00440 Bacterial regulatory proteins, tetR family AC028_19915 PF16576 AC028_19915 AC028_19920 PF00873 AcrB/AcrD/AcrF family AC028_19925 PF00356 Bacterial regulatory proteins, lacI family AC028_19925 PF13377 Periplasmic binding protein-like domain AC028_19930 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AC028_19930 PF00381 PTS HPr component phosphorylation site AC028_19930 PF00391 PEP-utilising enzyme, mobile domain AC028_19930 PF02896 PEP-utilising enzyme, TIM barrel domain AC028_19930 PF05524 PEP-utilising enzyme, N-terminal AC028_19935 PF00294 pfkB family carbohydrate kinase AC028_19940 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AC028_19945 PF13276 AC028_19945 AC028_19945 PF13683 AC028_19945 AC028_19950 PF01527 Transposase AC028_19965 PF02355 Protein export membrane protein AC028_19965 PF07549 SecD/SecF GG Motif AC028_19970 PF02355 Protein export membrane protein AC028_19970 PF07549 SecD/SecF GG Motif AC028_19970 PF13721 SecD export protein N-terminal TM region AC028_19975 PF02699 Preprotein translocase subunit AC028_19980 PF01702 Queuine tRNA-ribosyltransferase AC028_19985 PF02547 Queuosine biosynthesis protein AC028_19990 PF01037 AsnC family AC028_19990 PF13412 Winged helix-turn-helix DNA-binding AC028_20000 PF00202 Aminotransferase class-III AC028_20005 PF04488 Glycosyltransferase sugar-binding region containing DXD motif AC028_20015 PF02333 Phytase AC028_20020 PF00593 TonB dependent receptor AC028_20020 PF07715 TonB-dependent Receptor Plug Domain AC028_20025 PF14681 Uracil phosphoribosyltransferase AC028_20030 PF00665 Integrase core domain AC028_20030 PF13276 AC028_20030 AC028_20035 PF01527 Transposase AC028_20040 PF00759 Glycosyl hydrolase family 9 AC028_20040 PF02927 N-terminal ig-like domain of cellulase AC028_20050 PF01019 Gamma-glutamyltranspeptidase AC028_20055 PF00037 4Fe-4S binding domain AC028_20070 PF01467 Cytidylyltransferase AC028_20075 PF03602 Conserved hypothetical protein 95 AC028_20080 PF00183 Hsp90 protein AC028_20080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_20085 PF05593 AC028_20085 AC028_20090 PF12760 Transposase zinc-ribbon domain AC028_20090 PF12762 AC028_20090 AC028_20095 PF01527 Transposase AC028_20100 PF00665 Integrase core domain AC028_20100 PF13276 AC028_20100 AC028_20105 PF12760 Transposase zinc-ribbon domain AC028_20105 PF12762 AC028_20105 AC028_20110 PF01609 Transposase DDE domain AC028_20110 PF05598 AC028_20110 AC028_20115 PF08845 AC028_20115 AC028_20120 PF07944 Putative glycosyl hydrolase of unknown function (DUF1680) AC028_20125 PF00593 TonB dependent receptor AC028_20125 PF07715 TonB-dependent Receptor Plug Domain AC028_20130 PF00326 Prolyl oligopeptidase family AC028_20130 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AC028_20135 PF04616 Glycosyl hydrolases family 43 AC028_20140 PF00754 F5/8 type C domain AC028_20140 PF07532 AC028_20140 AC028_20145 PF00593 TonB dependent receptor AC028_20145 PF07715 TonB-dependent Receptor Plug Domain AC028_20155 PF00082 Subtilase family AC028_20155 PF09286 Pro-kumamolisin, activation domain AC028_20170 PF01301 Glycosyl hydrolases family 35 AC028_20175 PF00326 Prolyl oligopeptidase family AC028_20175 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AC028_20180 PF13520 Amino acid permease AC028_20185 PF05960 Bacterial protein of unknown function (DUF885) AC028_20190 PF05960 Bacterial protein of unknown function (DUF885) AC028_20195 PF00557 Metallopeptidase family M24 AC028_20195 PF01321 Creatinase/Prolidase N-terminal domain AC028_20200 PF00171 Aldehyde dehydrogenase family AC028_20205 PF00701 Dihydrodipicolinate synthetase family AC028_20210 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_20215 PF13510 2Fe-2S iron-sulfur cluster binding domain AC028_20220 PF01266 FAD dependent oxidoreductase AC028_20225 PF05544 Proline racemase AC028_20230 PF08448 PAS fold AC028_20230 PF12833 Helix-turn-helix domain AC028_20235 PF00448 SRP54-type protein, GTPase domain AC028_20235 PF02881 SRP54-type protein, helical bundle domain AC028_20240 PF00633 Helix-hairpin-helix motif AC028_20240 PF00730 HhH-GPD superfamily base excision DNA repair protein AC028_20240 PF14815 NUDIX domain AC028_20245 PF04362 Bacterial Fe(2+) trafficking AC028_20250 PF00072 Response regulator receiver domain AC028_20250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_20250 PF13426 PAS domain AC028_20260 PF10685 AC028_20260 AC028_20280 PF08212 Lipocalin-like domain AC028_20285 PF03168 Late embryogenesis abundant protein AC028_20290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC028_20290 PF02770 Acyl-CoA dehydrogenase, middle domain AC028_20290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC028_20290 PF12418 AC028_20290 AC028_20290 PF12806 AC028_20290 AC028_20295 PF14279 AC028_20295 AC028_20300 PF02779 Transketolase, pyrimidine binding domain AC028_20300 PF02780 Transketolase, C-terminal domain AC028_20300 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AC028_20305 PF04101 Glycosyltransferase family 28 C-terminal domain AC028_20315 PF13506 Glycosyl transferase family 21 AC028_20320 PF01370 NAD dependent epimerase/dehydratase family AC028_20325 PF00753 Metallo-beta-lactamase superfamily AC028_20330 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AC028_20330 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AC028_20335 PF01963 AC028_20335 AC028_20340 PF06172 Cupin superfamily (DUF985) AC028_20345 PF03808 AC028_20345 AC028_20350 PF04230 AC028_20350 AC028_20360 PF13440 AC028_20360 AC028_20365 PF13692 Glycosyl transferases group 1 AC028_20370 PF00534 Glycosyl transferases group 1 AC028_20370 PF13439 Glycosyltransferase Family 4 AC028_20375 PF01757 AC028_20375 AC028_20380 PF01757 AC028_20380 AC028_20390 PF02397 AC028_20390 AC028_20390 PF13727 CoA-binding domain AC028_20395 PF02706 Chain length determinant protein AC028_20395 PF13807 AC028_20395 AC028_20400 PF02563 Polysaccharide biosynthesis/export protein AC028_20400 PF10531 SLBB domain AC028_20410 PF13411 MerR HTH family regulatory protein AC028_20415 PF00216 Bacterial DNA-binding protein AC028_20420 PF01588 Putative tRNA binding domain AC028_20420 PF03147 Ferredoxin-fold anticodon binding domain AC028_20420 PF03483 B3/4 domain AC028_20420 PF03484 tRNA synthetase B5 domain AC028_20425 PF01409 tRNA synthetases class II core domain (F) AC028_20425 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AC028_20430 PF00453 Ribosomal protein L20 AC028_20435 PF01632 Ribosomal protein L35 AC028_20440 PF00707 Translation initiation factor IF-3, C-terminal domain AC028_20440 PF05198 Translation initiation factor IF-3, N-terminal domain AC028_20445 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AC028_20445 PF02824 TGS domain AC028_20445 PF03129 Anticodon binding domain AC028_20445 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AC028_20450 PF00356 Bacterial regulatory proteins, lacI family AC028_20450 PF13377 Periplasmic binding protein-like domain AC028_20460 PF12760 Transposase zinc-ribbon domain AC028_20460 PF12762 AC028_20460 AC028_20470 PF12760 Transposase zinc-ribbon domain AC028_20470 PF12762 AC028_20470 AC028_20480 PF01527 Transposase AC028_20485 PF00665 Integrase core domain AC028_20485 PF13276 AC028_20485 AC028_20490 PF02534 Type IV secretory system Conjugative DNA transfer AC028_20505 PF00271 Helicase conserved C-terminal domain AC028_20505 PF02151 UvrB/uvrC motif AC028_20505 PF04851 Type III restriction enzyme, res subunit AC028_20505 PF12344 Ultra-violet resistance protein B AC028_20510 PF12019 Type II transport protein GspH AC028_20515 PF01609 Transposase DDE domain AC028_20515 PF05598 AC028_20515 AC028_20520 PF13276 AC028_20520 AC028_20520 PF13683 AC028_20520 AC028_20525 PF01527 Transposase AC028_20535 PF07963 Prokaryotic N-terminal methylation motif AC028_20535 PF16732 AC028_20535 AC028_20540 PF05567 Neisseria PilC beta-propeller domain AC028_20545 PF14341 AC028_20545 AC028_20550 PF12760 Transposase zinc-ribbon domain AC028_20550 PF12762 AC028_20550 AC028_20555 PF07963 Prokaryotic N-terminal methylation motif AC028_20560 PF07963 Prokaryotic N-terminal methylation motif AC028_20560 PF12019 Type II transport protein GspH AC028_20565 PF03641 Possible lysine decarboxylase AC028_20565 PF11892 Domain of unknown function (DUF3412) AC028_20565 PF14793 Domain of unknown function (DUF4478) AC028_20570 PF07715 TonB-dependent Receptor Plug Domain AC028_20570 PF13620 Carboxypeptidase regulatory-like domain AC028_20575 PF01914 AC028_20575 AC028_20580 PF00106 short chain dehydrogenase AC028_20585 PF00462 Glutaredoxin AC028_20590 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AC028_20590 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AC028_20595 PF02222 ATP-grasp domain AC028_20600 PF00731 AIR carboxylase AC028_20605 PF03966 Trm112p-like protein AC028_20610 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AC028_20610 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AC028_20615 PF10030 AC028_20615 AC028_20620 PF00013 KH domain AC028_20620 PF00575 S1 RNA binding domain AC028_20620 PF01138 3' exoribonuclease family, domain 1 AC028_20620 PF03725 3' exoribonuclease family, domain 2 AC028_20620 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AC028_20625 PF00312 Ribosomal protein S15 AC028_20630 PF01509 TruB family pseudouridylate synthase (N terminal domain) AC028_20630 PF09157 Pseudouridine synthase II TruB, C-terminal AC028_20630 PF16198 AC028_20630 AC028_20635 PF02033 Ribosome-binding factor A AC028_20640 PF00009 Elongation factor Tu GTP binding domain AC028_20640 PF04760 Translation initiation factor IF-2, N-terminal region AC028_20640 PF08364 AC028_20640 AC028_20640 PF11987 Translation-initiation factor 2 AC028_20645 PF00575 S1 RNA binding domain AC028_20645 PF08529 NusA N-terminal domain AC028_20645 PF13184 NusA-like KH domain AC028_20645 PF14520 Helix-hairpin-helix domain AC028_20650 PF02576 Uncharacterised BCR, YhbC family COG0779 AC028_20650 PF17384 AC028_20650 AC028_20660 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AC028_20665 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AC028_20670 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AC028_20670 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AC028_20675 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AC028_20680 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AC028_20685 PF12838 4Fe-4S dicluster domain AC028_20690 PF00146 NADH dehydrogenase AC028_20695 PF00384 Molybdopterin oxidoreductase AC028_20695 PF01568 Molydopterin dinucleotide binding domain AC028_20695 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AC028_20695 PF13510 2Fe-2S iron-sulfur cluster binding domain AC028_20700 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AC028_20700 PF10531 SLBB domain AC028_20700 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AC028_20705 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AC028_20710 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AC028_20715 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AC028_20720 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AC028_20725 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AC028_20735 PF03840 Preprotein translocase SecG subunit AC028_20740 PF00121 Triosephosphate isomerase AC028_20745 PF00106 short chain dehydrogenase AC028_20750 PF01609 Transposase DDE domain AC028_20750 PF05598 AC028_20750 AC028_20755 PF01152 Bacterial-like globin AC028_20760 PF11231 AC028_20760 AC028_20765 PF00563 EAL domain AC028_20765 PF00672 HAMP domain AC028_20765 PF00990 GGDEF domain AC028_20765 PF14827 Sensory domain of two-component sensor kinase AC028_20775 PF03171 2OG-Fe(II) oxygenase superfamily AC028_20775 PF14226 non-haem dioxygenase in morphine synthesis N-terminal AC028_20785 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AC028_20785 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AC028_20785 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AC028_20785 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AC028_20790 PF01039 Carboxyl transferase domain AC028_20795 PF00290 Tryptophan synthase alpha chain AC028_20805 PF00291 Pyridoxal-phosphate dependent enzyme AC028_20810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_20810 PF03466 LysR substrate binding domain AC028_20815 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AC028_20820 PF01416 tRNA pseudouridine synthase AC028_20825 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AC028_20840 PF01118 Semialdehyde dehydrogenase, NAD binding domain AC028_20840 PF02774 Semialdehyde dehydrogenase, dimerisation domain AC028_20845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AC028_20845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AC028_20850 PF01264 Chorismate synthase AC028_20855 PF05175 Methyltransferase small domain AC028_20860 PF02630 SCO1/SenC AC028_20865 PF02666 AC028_20865 AC028_20870 PF01464 Transglycosylase SLT domain AC028_20870 PF01476 LysM domain AC028_20875 PF05872 AC028_20875 AC028_20880 PF00293 NUDIX domain AC028_20890 PF01694 Rhomboid family AC028_20895 PF01272 Transcription elongation factor, GreA/GreB, C-term AC028_20895 PF03449 Transcription elongation factor, N-terminal AC028_20900 PF00919 Uncharacterized protein family UPF0004 AC028_20900 PF04055 Radical SAM superfamily AC028_20905 PF01738 Dienelactone hydrolase family AC028_20910 PF01230 HIT domain AC028_20925 PF00692 dUTPase AC028_20930 PF10609 ParA/MinD ATPase like AC028_20935 PF00593 TonB dependent receptor AC028_20935 PF07715 TonB-dependent Receptor Plug Domain AC028_20940 PF00593 TonB dependent receptor AC028_20940 PF07715 TonB-dependent Receptor Plug Domain AC028_20940 PF13620 Carboxypeptidase regulatory-like domain AC028_20945 PF01593 Flavin containing amine oxidoreductase AC028_20950 PF01431 Peptidase family M13 AC028_20950 PF05649 Peptidase family M13 AC028_20955 PF01431 Peptidase family M13 AC028_20955 PF05649 Peptidase family M13 AC028_20960 PF01431 Peptidase family M13 AC028_20960 PF05649 Peptidase family M13 AC028_20965 PF01694 Rhomboid family AC028_20970 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AC028_20975 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AC028_20975 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC028_20980 PF01266 FAD dependent oxidoreductase AC028_20985 PF04235 AC028_20985 AC028_20990 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AC028_20995 PF00877 NlpC/P60 family AC028_21000 PF00877 NlpC/P60 family AC028_21005 PF03061 Thioesterase superfamily AC028_21010 PF13847 Methyltransferase domain AC028_21015 PF00375 Sodium:dicarboxylate symporter family AC028_21020 PF00245 Alkaline phosphatase AC028_21025 PF01171 PP-loop family AC028_21025 PF09179 TilS substrate binding domain AC028_21025 PF11734 TilS substrate C-terminal domain AC028_21030 PF02609 Exonuclease VII small subunit AC028_21035 PF00348 Polyprenyl synthetase AC028_21045 PF09685 AC028_21045 AC028_21050 PF01523 Putative modulator of DNA gyrase AC028_21055 PF04751 Protein of unknown function (DUF615) AC028_21060 PF01523 Putative modulator of DNA gyrase AC028_21070 PF13116 AC028_21070 AC028_21070 PF13502 AC028_21070 AC028_21075 PF10150 Ribonuclease E/G family AC028_21080 PF02545 Maf-like protein AC028_21085 PF04402 Protein of unknown function (DUF541) AC028_21090 PF00593 TonB dependent receptor AC028_21090 PF07715 TonB-dependent Receptor Plug Domain AC028_21090 PF13620 Carboxypeptidase regulatory-like domain AC028_21095 PF03544 Gram-negative bacterial TonB protein C-terminal AC028_21100 PF02590 Predicted SPOUT methyltransferase AC028_21105 PF05787 Bacterial protein of unknown function (DUF839) AC028_21105 PF10518 TAT (twin-arginine translocation) pathway signal sequence AC028_21110 PF02410 Oligomerisation domain AC028_21115 PF01467 Cytidylyltransferase AC028_21120 PF06144 DNA polymerase III, delta subunit AC028_21125 PF04390 Lipopolysaccharide-assembly AC028_21130 PF00133 tRNA synthetases class I (I, L, M and V) AC028_21130 PF08264 Anticodon-binding domain of tRNA AC028_21130 PF13603 Leucyl-tRNA synthetase, Domain 2 AC028_21135 PF06197 AC028_21135 AC028_21140 PF00085 Thioredoxin AC028_21140 PF14559 Tetratricopeptide repeat AC028_21140 PF14561 Tetratricopeptide repeat AC028_21145 PF14539 Domain of unknown function (DUF4442) AC028_21150 PF12760 Transposase zinc-ribbon domain AC028_21150 PF12762 AC028_21150 AC028_21175 PF04070 AC028_21175 AC028_21180 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AC028_21185 PF00892 EamA-like transporter family AC028_21190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC028_21190 PF03466 LysR substrate binding domain AC028_21195 PF11066 AC028_21195 AC028_21205 PF14257 AC028_21205 AC028_21210 PF04828 Glutathione-dependent formaldehyde-activating enzyme AC028_21215 PF05960 Bacterial protein of unknown function (DUF885) AC028_21220 PF00005 ABC transporter AC028_21220 PF00664 ABC transporter transmembrane region AC028_21225 PF07929 Plasmid pRiA4b ORF-3-like protein AC028_21235 PF12760 Transposase zinc-ribbon domain AC028_21235 PF12762 AC028_21235 AC028_21240 PF16576 AC028_21240 AC028_21245 PF00440 Bacterial regulatory proteins, tetR family AC028_21245 PF14246 AefR-like transcriptional repressor, C-terminal region AC028_21250 PF01475 Ferric uptake regulator family AC028_21255 PF00749 tRNA synthetases class I (E and Q), catalytic domain AC028_21260 PF12275 AC028_21260 AC028_21265 PF00795 Carbon-nitrogen hydrolase AC028_21280 PF06123 AC028_21280 AC028_21285 PF00112 Papain family cysteine protease AC028_21295 PF00512 His Kinase A (phospho-acceptor) domain AC028_21295 PF00672 HAMP domain AC028_21295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_21300 PF00072 Response regulator receiver domain AC028_21300 PF00486 Transcriptional regulatory protein, C terminal AC028_21305 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ AC028_21310 PF13302 Acetyltransferase (GNAT) domain AC028_21315 PF12760 Transposase zinc-ribbon domain AC028_21315 PF12762 AC028_21315 AC028_21320 PF00270 DEAD/DEAH box helicase AC028_21320 PF00271 Helicase conserved C-terminal domain AC028_21320 PF02559 CarD-like/TRCF domain AC028_21320 PF03461 TRCF domain AC028_21325 PF13466 STAS domain AC028_21330 PF01584 CheW-like domain AC028_21330 PF01627 Hpt domain AC028_21330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC028_21330 PF02895 Signal transducing histidine kinase, homodimeric domain AC028_21335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC028_21340 PF01584 CheW-like domain AC028_21360 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AC028_21375 PF06414 Zeta toxin AC028_21380 PF02810 SEC-C motif AC028_21380 PF03695 Uncharacterised protein family (UPF0149) AC028_21390 PF11740 AC028_21390 AC028_21395 PF00239 Resolvase, N terminal domain AC028_21400 PF04221 RelB antitoxin AC028_21405 PF15738 AC028_21405 AC028_21445 PF02452 PemK-like protein AC028_21450 PF11455 AC028_21450 AC028_21465 PF13091 PLD-like domain AC028_21475 PF01464 Transglycosylase SLT domain AC028_21480 PF00437 Type II/IV secretion system protein AC028_21485 PF03743 Bacterial conjugation TrbI-like protein AC028_21490 PF03524 Conjugal transfer protein AC028_21495 PF04335 VirB8 protein AC028_21500 PF04610 AC028_21500 AC028_21515 PF07996 Type IV secretion system proteins AC028_21520 PF03135 AC028_21520 AC028_21525 PF05101 AC028_21525 AC028_21530 PF04956 AC028_21530 AC028_21550 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AC028_21555 PF09274 ParG