AC028_00005 SM00448 cheY-homologous receiver domain AC028_00010 SM00138 Methyltransferase, chemotaxis proteins AC028_00015 SM00448 cheY-homologous receiver domain AC028_00020 SM00155 Phospholipase D. Active site motifs. AC028_00035 SM00855 Phosphoglycerate mutase family AC028_00080 SM01126 AC028_00080 AC028_00090 SM00248 ankyrin repeats AC028_00130 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AC028_00135 SM01092 CO dehydrogenase flavoprotein C-terminal domain AC028_00145 SM00829 Enoylreductase AC028_00150 SM00267 diguanylate cyclase AC028_00215 SM00732 Likely ribonuclease with RNase H fold. AC028_00250 SM00382 ATPases associated with a variety of cellular activities AC028_00265 SM00411 bacterial (prokaryotic) histone like domain AC028_00295 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain AC028_00310 SM00382 ATPases associated with a variety of cellular activities AC028_00340 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AC028_00345 SM00671 Sel1-like repeats. AC028_00460 SM00116 Domain in cystathionine beta-synthase and other proteins. AC028_00480 SM00382 ATPases associated with a variety of cellular activities AC028_00525 SM00924 MgtE intracellular N domain AC028_00555 SM00656 AC028_00555 AC028_00570 SM00421 helix_turn_helix, Lux Regulon AC028_00585 SM01126 AC028_00585 AC028_00610 SM00849 Metallo-beta-lactamase superfamily AC028_00620 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AC028_00645 SM00422 helix_turn_helix, mercury resistance AC028_00725 SM00387 Histidine kinase-like ATPases AC028_00725 SM00388 His Kinase A (phosphoacceptor) domain AC028_00725 SM00448 cheY-homologous receiver domain AC028_00745 SM01126 AC028_00745 AC028_00755 SM00387 Histidine kinase-like ATPases AC028_00755 SM00388 His Kinase A (phosphoacceptor) domain AC028_00755 SM00448 cheY-homologous receiver domain AC028_00760 SM00867 YceI-like domain AC028_00770 SM00867 YceI-like domain AC028_00830 SM00116 Domain in cystathionine beta-synthase and other proteins. AC028_00955 SM00812 Alpha-L-fucosidase AC028_00960 SM00636 AC028_00960 AC028_00975 SM00758 AC028_00975 AC028_00975 SM01217 AC028_00975 AC028_01000 SM01149 AC028_01000 AC028_01050 SM01126 AC028_01050 AC028_01065 SM00260 Two component signalling adaptor domain AC028_01075 SM00073 Histidine Phosphotransfer domain AC028_01075 SM00260 Two component signalling adaptor domain AC028_01075 SM00387 Histidine kinase-like ATPases AC028_01075 SM00448 cheY-homologous receiver domain AC028_01075 SM01231 AC028_01075 AC028_01080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_01085 SM00260 Two component signalling adaptor domain AC028_01090 SM00448 cheY-homologous receiver domain AC028_01095 SM00448 cheY-homologous receiver domain AC028_01120 SM00491 AC028_01120 AC028_01145 SM00954 Region found in RelA / SpoT proteins AC028_01190 SM00382 ATPases associated with a variety of cellular activities AC028_01190 SM00487 DEAD-like helicases superfamily AC028_01190 SM00490 helicase superfamily c-terminal domain AC028_01190 SM00847 Helicase associated domain (HA2) Add an annotation AC028_01200 SM00341 Helicase and RNase D C-terminal AC028_01200 SM00487 DEAD-like helicases superfamily AC028_01200 SM00490 helicase superfamily c-terminal domain AC028_01200 SM00956 AC028_01200 AC028_01210 SM00448 cheY-homologous receiver domain AC028_01235 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_01235 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_01250 SM00448 cheY-homologous receiver domain AC028_01255 SM00091 PAS domain AC028_01255 SM00911 HWE histidine kinase AC028_01310 SM00382 ATPases associated with a variety of cellular activities AC028_01320 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AC028_01355 SM00834 Putative regulatory protein AC028_01385 SM01126 AC028_01385 AC028_01405 SM00382 ATPases associated with a variety of cellular activities AC028_01510 SM00855 Phosphoglycerate mutase family AC028_01570 SM00382 ATPases associated with a variety of cellular activities AC028_01570 SM01086 C-terminal, D2-small domain, of ClpB protein AC028_01575 SM00382 ATPases associated with a variety of cellular activities AC028_01600 SM01126 AC028_01600 AC028_01665 SM00564 beta-propeller repeat AC028_01670 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_01715 SM00881 CoA binding domain AC028_01725 SM00387 Histidine kinase-like ATPases AC028_01725 SM00388 His Kinase A (phosphoacceptor) domain AC028_01730 SM00382 ATPases associated with a variety of cellular activities AC028_01730 SM00448 cheY-homologous receiver domain AC028_01785 SM00387 Histidine kinase-like ATPases AC028_01785 SM00388 His Kinase A (phosphoacceptor) domain AC028_01790 SM00448 cheY-homologous receiver domain AC028_01790 SM00862 Transcriptional regulatory protein, C terminal AC028_01805 SM00642 Alpha-amylase domain AC028_01810 SM01126 AC028_01810 AC028_01815 SM00528 Domain in histone-like proteins of HNS family AC028_01825 SM00318 Staphylococcal nuclease homologues AC028_01860 SM00869 Autotransporter beta-domain AC028_01920 SM00354 helix_turn _helix lactose operon repressor AC028_01950 SM00967 RNA 2'-O ribose methyltransferase substrate binding AC028_02035 SM01126 AC028_02035 AC028_02095 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AC028_02095 SM00387 Histidine kinase-like ATPases AC028_02165 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AC028_02190 SM00849 Metallo-beta-lactamase superfamily AC028_02205 SM00382 ATPases associated with a variety of cellular activities AC028_02295 SM00861 Transketolase, pyrimidine binding domain AC028_02310 SM00028 Tetratricopeptide repeats AC028_02310 SM00327 von Willebrand factor (vWF) type A domain AC028_02315 SM00327 von Willebrand factor (vWF) type A domain AC028_02330 SM00382 ATPases associated with a variety of cellular activities AC028_02335 SM00965 Secretin and TonB N terminus short domain AC028_02355 SM00842 Cell division protein FtsA AC028_02385 SM00487 DEAD-like helicases superfamily AC028_02385 SM00490 helicase superfamily c-terminal domain AC028_02395 SM00858 AC028_02395 AC028_02405 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AC028_02420 SM01130 AC028_02420 AC028_02430 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AC028_02430 SM00954 Region found in RelA / SpoT proteins AC028_02435 SM01409 AC028_02435 AC028_02440 SM00072 Guanylate kinase homologues. AC028_02465 SM00729 Elongator protein 3, MiaB family, Radical SAM AC028_02485 SM01011 Aminopeptidase P, N-terminal domain AC028_02550 SM00028 Tetratricopeptide repeats AC028_02550 SM00382 ATPases associated with a variety of cellular activities AC028_02550 SM00421 helix_turn_helix, Lux Regulon AC028_02620 SM00464 Found in ATP-dependent protease La (LON) AC028_02670 SM00342 helix_turn_helix, arabinose operon control protein AC028_02675 SM00862 Transcriptional regulatory protein, C terminal AC028_02690 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_02720 SM00917 LeuA allosteric (dimerisation) domain AC028_02725 SM01329 AC028_02725 AC028_02745 SM00267 diguanylate cyclase AC028_02840 SM00450 Rhodanese Homology Domain AC028_02910 SM00028 Tetratricopeptide repeats AC028_02990 SM00345 helix_turn_helix gluconate operon transcriptional repressor AC028_02990 SM00866 AC028_02990 AC028_03050 SM00382 ATPases associated with a variety of cellular activities AC028_03070 SM01126 AC028_03070 AC028_03080 SM01211 AC028_03080 AC028_03175 SM01126 AC028_03175 AC028_03185 SM01126 AC028_03185 AC028_03350 SM00382 ATPases associated with a variety of cellular activities AC028_03575 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AC028_03580 SM00869 Autotransporter beta-domain AC028_03630 SM00487 DEAD-like helicases superfamily AC028_03630 SM00490 helicase superfamily c-terminal domain AC028_03645 SM00357 Cold shock protein domain AC028_03680 SM01118 AC028_03680 AC028_03690 SM00448 cheY-homologous receiver domain AC028_03705 SM00358 Double-stranded RNA binding motif AC028_03705 SM00535 Ribonuclease III family AC028_03720 SM00838 Elongation factor G C-terminus AC028_03725 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AC028_03755 SM01126 AC028_03755 AC028_03795 SM00938 Nitrogen regulatory protein P-II AC028_03805 SM00382 ATPases associated with a variety of cellular activities AC028_03820 SM00052 Putative diguanylate phosphodiesterase AC028_03840 SM01126 AC028_03840 AC028_03850 SM00244 prohibitin homologues AC028_03900 SM00448 cheY-homologous receiver domain AC028_03900 SM00862 Transcriptional regulatory protein, C terminal AC028_03905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_03905 SM00387 Histidine kinase-like ATPases AC028_03905 SM00388 His Kinase A (phosphoacceptor) domain AC028_03930 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AC028_03970 SM01060 AC028_03970 AC028_03985 SM00421 helix_turn_helix, Lux Regulon AC028_03985 SM00448 cheY-homologous receiver domain AC028_04000 SM00382 ATPases associated with a variety of cellular activities AC028_04040 SM00849 Metallo-beta-lactamase superfamily AC028_04070 SM00960 Roadblock/LC7 domain AC028_04135 SM00387 Histidine kinase-like ATPases AC028_04135 SM00388 His Kinase A (phosphoacceptor) domain AC028_04140 SM00448 cheY-homologous receiver domain AC028_04140 SM00862 Transcriptional regulatory protein, C terminal AC028_04160 SM00248 ankyrin repeats AC028_04165 SM01060 AC028_04165 AC028_04175 SM00491 AC028_04175 AC028_04205 SM00477 DNA/RNA non-specific endonuclease AC028_04205 SM00892 DNA/RNA non-specific endonuclease AC028_04220 SM01004 Delta-aminolevulinic acid dehydratase AC028_04245 SM01126 AC028_04245 AC028_04270 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AC028_04290 SM00382 ATPases associated with a variety of cellular activities AC028_04300 SM00530 Helix-turn-helix XRE-family like proteins AC028_04330 SM00382 ATPases associated with a variety of cellular activities AC028_04390 SM00881 CoA binding domain AC028_04395 SM00116 Domain in cystathionine beta-synthase and other proteins. AC028_04395 SM00924 MgtE intracellular N domain AC028_04400 SM01057 Eukaryotic-type carbonic anhydrase AC028_04420 SM00248 ankyrin repeats AC028_04430 SM00825 Beta-ketoacyl synthase AC028_04455 SM00822 AC028_04455 AC028_04500 SM00563 Phosphate acyltransferases AC028_04555 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AC028_04555 SM00474 3'-5' exonuclease AC028_04555 SM00475 5'-3' exonuclease AC028_04555 SM00482 DNA polymerase A domain AC028_04570 SM00912 haemagglutination activity domain AC028_04590 SM00331 Sigma factor PP2C-like phosphatases AC028_04590 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AC028_04625 SM00240 Forkhead associated domain AC028_04640 SM00028 Tetratricopeptide repeats AC028_04650 SM00220 Serine/Threonine protein kinases, catalytic domain AC028_04670 SM00965 Secretin and TonB N terminus short domain AC028_04680 SM00915 Jacalin-like lectin domain AC028_04700 SM01126 AC028_04700 AC028_04720 SM01126 AC028_04720 AC028_04775 SM00642 Alpha-amylase domain AC028_04780 SM00642 Alpha-amylase domain AC028_04785 SM00642 Alpha-amylase domain AC028_04835 SM00354 helix_turn _helix lactose operon repressor AC028_04870 SM00344 helix_turn_helix ASNC type AC028_04890 SM00382 ATPases associated with a variety of cellular activities AC028_04905 SM00382 ATPases associated with a variety of cellular activities AC028_04960 SM00855 Phosphoglycerate mutase family AC028_04965 SM00867 YceI-like domain AC028_04970 SM00155 Phospholipase D. Active site motifs. AC028_04980 SM00563 Phosphate acyltransferases AC028_04995 SM00028 Tetratricopeptide repeats AC028_05005 SM00829 Enoylreductase AC028_05020 SM01230 AC028_05020 AC028_05025 SM00938 Nitrogen regulatory protein P-II AC028_05035 SM00387 Histidine kinase-like ATPases AC028_05035 SM00388 His Kinase A (phosphoacceptor) domain AC028_05040 SM00382 ATPases associated with a variety of cellular activities AC028_05040 SM00448 cheY-homologous receiver domain AC028_05100 SM00450 Rhodanese Homology Domain AC028_05125 SM01126 AC028_05125 AC028_05135 SM00387 Histidine kinase-like ATPases AC028_05135 SM00388 His Kinase A (phosphoacceptor) domain AC028_05140 SM00382 ATPases associated with a variety of cellular activities AC028_05140 SM00448 cheY-homologous receiver domain AC028_05200 SM00028 Tetratricopeptide repeats AC028_05200 SM00862 Transcriptional regulatory protein, C terminal AC028_05260 SM00563 Phosphate acyltransferases AC028_05300 SM00342 helix_turn_helix, arabinose operon control protein AC028_05325 SM00100 Cyclic nucleotide-monophosphate binding domain AC028_05325 SM00267 diguanylate cyclase AC028_05365 SM00878 Biotin carboxylase C-terminal domain AC028_05390 SM00953 AC028_05390 AC028_05430 SM00833 Cobalamin synthesis protein cobW C-terminal domain AC028_05460 SM00347 helix_turn_helix multiple antibiotic resistance protein AC028_05495 SM00829 Enoylreductase AC028_05525 SM00487 DEAD-like helicases superfamily AC028_05525 SM00490 helicase superfamily c-terminal domain AC028_05525 SM00847 Helicase associated domain (HA2) Add an annotation AC028_05650 SM00422 helix_turn_helix, mercury resistance AC028_05685 SM00448 cheY-homologous receiver domain AC028_05685 SM00862 Transcriptional regulatory protein, C terminal AC028_05690 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_05690 SM00387 Histidine kinase-like ATPases AC028_05690 SM00388 His Kinase A (phosphoacceptor) domain AC028_05840 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AC028_05845 SM00347 helix_turn_helix multiple antibiotic resistance protein AC028_05865 SM00342 helix_turn_helix, arabinose operon control protein AC028_05895 SM00420 helix_turn_helix, Deoxyribose operon repressor AC028_05895 SM01134 AC028_05895 AC028_05910 SM00882 Coenzyme A transferase AC028_05915 SM00882 Coenzyme A transferase AC028_05935 SM00998 Adenylosuccinate lyase C-terminus AC028_05955 SM00346 helix_turn_helix isocitrate lyase regulation AC028_05960 SM00090 RIO-like kinase AC028_05980 SM01228 AC028_05980 AC028_06035 SM00729 Elongator protein 3, MiaB family, Radical SAM AC028_06035 SM00876 Biotin and Thiamin Synthesis associated domain AC028_06060 SM01126 AC028_06060 AC028_06065 SM01126 AC028_06065 AC028_06070 SM01126 AC028_06070 AC028_06075 SM00448 cheY-homologous receiver domain AC028_06100 SM00829 Enoylreductase AC028_06105 SM00563 Phosphate acyltransferases AC028_06115 SM00354 helix_turn _helix lactose operon repressor AC028_06140 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AC028_06175 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AC028_06175 SM00388 His Kinase A (phosphoacceptor) domain AC028_06190 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AC028_06190 SM01232 AC028_06190 AC028_06225 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AC028_06225 SM00091 PAS domain AC028_06280 SM00347 helix_turn_helix multiple antibiotic resistance protein AC028_06330 SM00155 Phospholipase D. Active site motifs. AC028_06370 SM01126 AC028_06370 AC028_06385 SM01126 AC028_06385 AC028_06390 SM01126 AC028_06390 AC028_06420 SM00822 AC028_06420 AC028_06465 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AC028_06465 SM00736 Dystroglycan-type cadherin-like domains. AC028_06465 SM00869 Autotransporter beta-domain AC028_06495 SM00382 ATPases associated with a variety of cellular activities AC028_06600 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AC028_06625 SM00014 Acid phosphatase homologues AC028_06655 SM00382 ATPases associated with a variety of cellular activities AC028_06655 SM00760 Bacterial dnaA protein helix-turn-helix domain AC028_06660 SM00480 DNA polymerase III beta subunit AC028_06670 SM00387 Histidine kinase-like ATPases AC028_06670 SM00433 TopoisomeraseII AC028_06685 SM00028 Tetratricopeptide repeats AC028_06725 SM00155 Phospholipase D. Active site motifs. AC028_06740 SM00729 Elongator protein 3, MiaB family, Radical SAM AC028_06760 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AC028_06760 SM00245 tail specific protease AC028_06805 SM00829 Enoylreductase AC028_06810 SM01126 AC028_06810 AC028_06820 SM00944 Pro-kumamolisin, activation domain AC028_06845 SM00867 YceI-like domain AC028_06900 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AC028_06910 SM00345 helix_turn_helix gluconate operon transcriptional repressor AC028_06910 SM00895 AC028_06910 AC028_06930 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_06930 SM00331 Sigma factor PP2C-like phosphatases AC028_06955 SM01126 AC028_06955 AC028_06965 SM01126 AC028_06965 AC028_06970 SM00382 ATPases associated with a variety of cellular activities AC028_06980 SM00836 DALR anticodon binding domain AC028_07005 SM01126 AC028_07005 AC028_07070 SM00564 beta-propeller repeat AC028_07095 SM00091 PAS domain AC028_07095 SM00387 Histidine kinase-like ATPases AC028_07095 SM00388 His Kinase A (phosphoacceptor) domain AC028_07095 SM00448 cheY-homologous receiver domain AC028_07105 SM00346 helix_turn_helix isocitrate lyase regulation AC028_07120 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AC028_07175 SM00421 helix_turn_helix, Lux Regulon AC028_07175 SM00448 cheY-homologous receiver domain AC028_07315 SM00155 Phospholipase D. Active site motifs. AC028_07335 SM01266 AC028_07335 AC028_07345 SM00342 helix_turn_helix, arabinose operon control protein AC028_07390 SM01126 AC028_07390 AC028_07420 SM00267 diguanylate cyclase AC028_07430 SM00642 Alpha-amylase domain AC028_07435 SM00642 Alpha-amylase domain AC028_07445 SM00642 Alpha-amylase domain AC028_07455 SM00642 Alpha-amylase domain AC028_07505 SM00822 AC028_07505 AC028_07515 SM00487 DEAD-like helicases superfamily AC028_07530 SM00861 Transketolase, pyrimidine binding domain AC028_07540 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AC028_07560 SM00347 helix_turn_helix multiple antibiotic resistance protein AC028_07650 SM00271 DnaJ molecular chaperone homology domain AC028_07670 SM00046 Diacylglycerol kinase catalytic domain (presumed) AC028_07690 SM00903 Flavin reductase like domain AC028_07710 SM00100 Cyclic nucleotide-monophosphate binding domain AC028_07710 SM00419 helix_turn_helix, cAMP Regulatory protein AC028_07765 SM00073 Histidine Phosphotransfer domain AC028_07765 SM00387 Histidine kinase-like ATPases AC028_07765 SM00388 His Kinase A (phosphoacceptor) domain AC028_07765 SM00448 cheY-homologous receiver domain AC028_07770 SM00052 Putative diguanylate phosphodiesterase AC028_07770 SM00267 diguanylate cyclase AC028_07770 SM00448 cheY-homologous receiver domain AC028_07820 SM00563 Phosphate acyltransferases AC028_07845 SM01209 AC028_07845 AC028_07845 SM01210 AC028_07845 AC028_07855 SM00798 AICARFT/IMPCHase bienzyme AC028_07855 SM00851 MGS-like domain AC028_07870 SM00195 Dual specificity phosphatase, catalytic domain AC028_07915 SM00530 Helix-turn-helix XRE-family like proteins AC028_07940 SM00878 Biotin carboxylase C-terminal domain AC028_07975 SM00883 Chaperonin 10 Kd subunit AC028_08040 SM01126 AC028_08040 AC028_08050 SM01126 AC028_08050 AC028_08145 SM00487 DEAD-like helicases superfamily AC028_08145 SM00490 helicase superfamily c-terminal domain AC028_08165 SM00822 AC028_08165 AC028_08170 SM00822 AC028_08170 AC028_08230 SM01126 AC028_08230 AC028_08290 SM01126 AC028_08290 AC028_08375 SM01126 AC028_08375 AC028_08465 SM00862 Transcriptional regulatory protein, C terminal AC028_08485 SM00421 helix_turn_helix, Lux Regulon AC028_08485 SM00448 cheY-homologous receiver domain AC028_08505 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AC028_08550 SM01126 AC028_08550 AC028_08560 SM01126 AC028_08560 AC028_08565 SM01126 AC028_08565 AC028_08630 SM01126 AC028_08630 AC028_08705 SM00354 helix_turn _helix lactose operon repressor AC028_08720 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AC028_08765 SM00612 AC028_08765 AC028_08795 SM01007 Class II Aldolase and Adducin N-terminal domain AC028_08820 SM00633 Glycosyl hydrolase family 10 AC028_08850 SM00633 Glycosyl hydrolase family 10 AC028_08900 SM01126 AC028_08900 AC028_08935 SM00369 Leucine-rich repeats, typical (most populated) subfamily AC028_09035 SM00382 ATPases associated with a variety of cellular activities AC028_09070 SM01126 AC028_09070 AC028_09080 SM01126 AC028_09080 AC028_09085 SM01086 C-terminal, D2-small domain, of ClpB protein AC028_09090 SM01126 AC028_09090 AC028_09095 SM00822 AC028_09095 AC028_09100 SM00342 helix_turn_helix, arabinose operon control protein AC028_09170 SM00267 diguanylate cyclase AC028_09240 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AC028_09240 SM01232 AC028_09240 AC028_09250 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AC028_09260 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AC028_09260 SM00091 PAS domain AC028_09260 SM00267 diguanylate cyclase AC028_09265 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_09265 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_09265 SM01049 AC028_09265 AC028_09270 SM00637 AC028_09270 AC028_09280 SM00267 diguanylate cyclase AC028_09305 SM00448 cheY-homologous receiver domain AC028_09305 SM00850 LytTr DNA-binding domain AC028_09380 SM00382 ATPases associated with a variety of cellular activities AC028_09380 SM01086 C-terminal, D2-small domain, of ClpB protein AC028_09410 SM00267 diguanylate cyclase AC028_09415 SM01263 AC028_09415 AC028_09430 SM00564 beta-propeller repeat AC028_09435 SM00062 Bacterial periplasmic substrate-binding proteins AC028_09435 SM00248 ankyrin repeats AC028_09450 SM00829 Enoylreductase AC028_09460 SM00382 ATPases associated with a variety of cellular activities AC028_09470 SM00268 Actin AC028_09495 SM00710 Parallel beta-helix repeats AC028_09510 SM00936 Penicillin-binding protein 5, C-terminal domain AC028_09530 SM00729 Elongator protein 3, MiaB family, Radical SAM AC028_09535 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AC028_09535 SM00245 tail specific protease AC028_09590 SM01350 AC028_09590 AC028_09600 SM00749 bacterial OsmY and nodulation domain AC028_09605 SM00387 Histidine kinase-like ATPases AC028_09605 SM00388 His Kinase A (phosphoacceptor) domain AC028_09610 SM00448 cheY-homologous receiver domain AC028_09615 SM00387 Histidine kinase-like ATPases AC028_09615 SM00388 His Kinase A (phosphoacceptor) domain AC028_09615 SM00448 cheY-homologous receiver domain AC028_09645 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AC028_09670 SM00382 ATPases associated with a variety of cellular activities AC028_09740 SM00345 helix_turn_helix gluconate operon transcriptional repressor AC028_09740 SM00866 AC028_09740 AC028_09750 SM00354 helix_turn _helix lactose operon repressor AC028_09820 SM00849 Metallo-beta-lactamase superfamily AC028_09825 SM00342 helix_turn_helix, arabinose operon control protein AC028_09840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_09840 SM00387 Histidine kinase-like ATPases AC028_09840 SM00388 His Kinase A (phosphoacceptor) domain AC028_09845 SM00448 cheY-homologous receiver domain AC028_09845 SM00862 Transcriptional regulatory protein, C terminal AC028_09865 SM00829 Enoylreductase AC028_09885 SM00345 helix_turn_helix gluconate operon transcriptional repressor AC028_09905 SM00382 ATPases associated with a variety of cellular activities AC028_09965 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AC028_09995 SM00387 Histidine kinase-like ATPases AC028_09995 SM00388 His Kinase A (phosphoacceptor) domain AC028_10000 SM00448 cheY-homologous receiver domain AC028_10000 SM00862 Transcriptional regulatory protein, C terminal AC028_10100 SM00842 Cell division protein FtsA AC028_10105 SM00864 Tubulin/FtsZ family, GTPase domain AC028_10105 SM00865 Tubulin/FtsZ family, C-terminal domain AC028_10125 SM00957 SecA DEAD-like domain AC028_10125 SM00958 SecA preprotein cross-linking domain AC028_10150 SM00829 Enoylreductase AC028_10155 SM00944 Pro-kumamolisin, activation domain AC028_10170 SM00642 Alpha-amylase domain AC028_10210 SM00996 S-adenosyl-L-homocysteine hydrolase AC028_10210 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AC028_10220 SM01126 AC028_10220 AC028_10335 SM00382 ATPases associated with a variety of cellular activities AC028_10355 SM00382 ATPases associated with a variety of cellular activities AC028_10365 SM00448 cheY-homologous receiver domain AC028_10365 SM00862 Transcriptional regulatory protein, C terminal AC028_10370 SM00387 Histidine kinase-like ATPases AC028_10370 SM00388 His Kinase A (phosphoacceptor) domain AC028_10420 SM00382 ATPases associated with a variety of cellular activities AC028_10430 SM00382 ATPases associated with a variety of cellular activities AC028_10490 SM00382 ATPases associated with a variety of cellular activities AC028_10505 SM00650 Ribosomal RNA adenine dimethylases AC028_10565 SM00345 helix_turn_helix gluconate operon transcriptional repressor AC028_10565 SM00895 AC028_10565 AC028_10600 SM00347 helix_turn_helix multiple antibiotic resistance protein AC028_10675 SM00448 cheY-homologous receiver domain AC028_10680 SM00387 Histidine kinase-like ATPases AC028_10680 SM00388 His Kinase A (phosphoacceptor) domain AC028_10680 SM00448 cheY-homologous receiver domain AC028_10685 SM00421 helix_turn_helix, Lux Regulon AC028_10750 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AC028_10750 SM00475 5'-3' exonuclease AC028_10780 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AC028_10780 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AC028_10895 SM00852 Probable molybdopterin binding domain AC028_10900 SM00028 Tetratricopeptide repeats AC028_10905 SM00937 AC028_10905 AC028_10915 SM00028 Tetratricopeptide repeats AC028_10935 SM01400 AC028_10935 AC028_10985 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AC028_10985 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AC028_10990 SM00649 Ribosomal protein L11/L12 AC028_11015 SM00663 RNA polymerase I subunit A N-terminus AC028_11030 SM00838 Elongation factor G C-terminus AC028_11030 SM00889 Elongation factor G, domain IV AC028_11040 SM01403 AC028_11040 AC028_11060 SM01382 AC028_11060 AC028_11060 SM01383 AC028_11060 AC028_11075 SM00322 K homology RNA-binding domain AC028_11095 SM01374 AC028_11095 AC028_11100 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AC028_11160 SM00363 S4 RNA-binding domain AC028_11160 SM01390 AC028_11160 AC028_11165 SM00662 RNA polymerases D AC028_11210 SM00838 Elongation factor G C-terminus AC028_11240 SM00829 Enoylreductase AC028_11285 SM00382 ATPases associated with a variety of cellular activities AC028_11295 SM00829 Enoylreductase AC028_11315 SM00855 Phosphoglycerate mutase family AC028_11360 SM00014 Acid phosphatase homologues AC028_11380 SM00387 Histidine kinase-like ATPases AC028_11380 SM00388 His Kinase A (phosphoacceptor) domain AC028_11385 SM00448 cheY-homologous receiver domain AC028_11385 SM00862 Transcriptional regulatory protein, C terminal AC028_11405 SM01329 AC028_11405 AC028_11435 SM01126 AC028_11435 AC028_11460 SM00382 ATPases associated with a variety of cellular activities AC028_11460 SM00994 ClpX C4-type zinc finger AC028_11460 SM01086 C-terminal, D2-small domain, of ClpB protein AC028_11465 SM00382 ATPases associated with a variety of cellular activities AC028_11465 SM00464 Found in ATP-dependent protease La (LON) AC028_11470 SM00411 bacterial (prokaryotic) histone like domain AC028_11495 SM00257 Lysin motif AC028_11500 SM00849 Metallo-beta-lactamase superfamily AC028_11515 SM00479 AC028_11515 AC028_11520 SM00331 Sigma factor PP2C-like phosphatases AC028_11520 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AC028_11545 SM00849 Metallo-beta-lactamase superfamily AC028_11550 SM00729 Elongator protein 3, MiaB family, Radical SAM AC028_11580 SM00382 ATPases associated with a variety of cellular activities AC028_11590 SM00493 AC028_11590 AC028_11605 SM00460 Transglutaminase/protease-like homologues AC028_11615 SM00382 ATPases associated with a variety of cellular activities AC028_11660 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AC028_11665 SM00822 AC028_11665 AC028_11675 SM00825 Beta-ketoacyl synthase AC028_11710 SM00382 ATPases associated with a variety of cellular activities AC028_11750 SM01359 AC028_11750 AC028_11750 SM01360 AC028_11750 AC028_11785 SM00271 DnaJ molecular chaperone homology domain AC028_11790 SM00448 cheY-homologous receiver domain AC028_11795 SM00244 prohibitin homologues AC028_11800 SM00244 prohibitin homologues AC028_11805 SM01321 AC028_11805 AC028_11810 SM00788 Adenylosuccinate synthetase AC028_11825 SM00822 AC028_11825 AC028_11900 SM00487 DEAD-like helicases superfamily AC028_11910 SM00220 Serine/Threonine protein kinases, catalytic domain AC028_11925 SM00855 Phosphoglycerate mutase family AC028_11935 SM01126 AC028_11935 AC028_11985 SM00052 Putative diguanylate phosphodiesterase AC028_11990 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AC028_12000 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AC028_12005 SM01092 CO dehydrogenase flavoprotein C-terminal domain AC028_12020 SM00974 AC028_12020 AC028_12040 SM00966 SpoVT / AbrB like domain AC028_12065 SM00481 DNA polymerase alpha chain like domain AC028_12075 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AC028_12105 SM01126 AC028_12105 AC028_12115 SM00091 PAS domain AC028_12115 SM00342 helix_turn_helix, arabinose operon control protein AC028_12130 SM01060 AC028_12130 AC028_12180 SM00448 cheY-homologous receiver domain AC028_12180 SM00862 Transcriptional regulatory protein, C terminal AC028_12185 SM00387 Histidine kinase-like ATPases AC028_12185 SM00388 His Kinase A (phosphoacceptor) domain AC028_12220 SM00421 helix_turn_helix, Lux Regulon AC028_12220 SM00448 cheY-homologous receiver domain AC028_12235 SM00478 endonuclease III AC028_12255 SM00244 prohibitin homologues AC028_12340 SM00904 Riboflavin kinase AC028_12405 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AC028_12410 SM00382 ATPases associated with a variety of cellular activities AC028_12420 SM00862 Transcriptional regulatory protein, C terminal AC028_12425 SM00342 helix_turn_helix, arabinose operon control protein AC028_12450 SM00387 Histidine kinase-like ATPases AC028_12460 SM00387 Histidine kinase-like ATPases AC028_12460 SM00388 His Kinase A (phosphoacceptor) domain AC028_12465 SM00387 Histidine kinase-like ATPases AC028_12465 SM00388 His Kinase A (phosphoacceptor) domain AC028_12465 SM00448 cheY-homologous receiver domain AC028_12495 SM00387 Histidine kinase-like ATPases AC028_12495 SM00388 His Kinase A (phosphoacceptor) domain AC028_12495 SM00448 cheY-homologous receiver domain AC028_12505 SM00138 Methyltransferase, chemotaxis proteins AC028_12510 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AC028_12510 SM00387 Histidine kinase-like ATPases AC028_12510 SM00388 His Kinase A (phosphoacceptor) domain AC028_12510 SM00448 cheY-homologous receiver domain AC028_12515 SM00091 PAS domain AC028_12515 SM00387 Histidine kinase-like ATPases AC028_12515 SM00388 His Kinase A (phosphoacceptor) domain AC028_12520 SM00448 cheY-homologous receiver domain AC028_12530 SM00813 Alpha-L-arabinofuranosidase C-terminus AC028_12550 SM00382 ATPases associated with a variety of cellular activities AC028_12550 SM00962 SRP54-type protein, GTPase domain AC028_12550 SM00963 SRP54-type protein, helical bundle domain AC028_12610 SM00363 S4 RNA-binding domain AC028_12625 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AC028_12625 SM00534 ATPase domain of DNA mismatch repair MUTS family AC028_12665 SM00812 Alpha-L-fucosidase AC028_12690 SM00530 Helix-turn-helix XRE-family like proteins AC028_12760 SM01126 AC028_12760 AC028_12795 SM00836 DALR anticodon binding domain AC028_12795 SM01016 Arginyl tRNA synthetase N terminal dom AC028_12825 SM01259 AC028_12825 AC028_12850 SM00470 ParB-like nuclease domain AC028_12995 SM00400 zinc finger AC028_12995 SM00493 AC028_12995 AC028_12995 SM00766 DNA primase DnaG DnaB-binding AC028_13020 SM00905 Dihydroneopterin aldolase AC028_13025 SM01217 AC028_13025 AC028_13060 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AC028_13070 SM00644 AC028_13070 AC028_13120 SM01150 AC028_13120 AC028_13190 SM00357 Cold shock protein domain AC028_13190 SM00382 ATPases associated with a variety of cellular activities AC028_13190 SM00959 Rho termination factor, N-terminal domain AC028_13200 SM00487 DEAD-like helicases superfamily AC028_13200 SM00490 helicase superfamily c-terminal domain AC028_13205 SM00382 ATPases associated with a variety of cellular activities AC028_13215 SM00448 cheY-homologous receiver domain AC028_13220 SM00986 Uracil DNA glycosylase superfamily AC028_13220 SM00987 UreE urease accessory protein, C-terminal domain AC028_13315 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AC028_13315 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AC028_13315 SM00493 AC028_13315 AC028_13340 SM00257 Lysin motif AC028_13435 SM01126 AC028_13435 AC028_13470 SM01126 AC028_13470 AC028_13565 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_13565 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_13590 SM00631 AC028_13590 AC028_13595 SM00382 ATPases associated with a variety of cellular activities AC028_13670 SM00382 ATPases associated with a variety of cellular activities AC028_13725 SM00382 ATPases associated with a variety of cellular activities AC028_13725 SM00448 cheY-homologous receiver domain AC028_13735 SM00448 cheY-homologous receiver domain AC028_13740 SM00091 PAS domain AC028_13740 SM00138 Methyltransferase, chemotaxis proteins AC028_13740 SM00911 HWE histidine kinase AC028_13780 SM00387 Histidine kinase-like ATPases AC028_13785 SM00448 cheY-homologous receiver domain AC028_13785 SM00850 LytTr DNA-binding domain AC028_13845 SM00729 Elongator protein 3, MiaB family, Radical SAM AC028_13850 SM00986 Uracil DNA glycosylase superfamily AC028_13850 SM00987 UreE urease accessory protein, C-terminal domain AC028_13855 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AC028_13865 SM00382 ATPases associated with a variety of cellular activities AC028_13920 SM00344 helix_turn_helix ASNC type AC028_13930 SM01005 Alanine racemase, C-terminal domain AC028_13950 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AC028_13950 SM00091 PAS domain AC028_13950 SM00387 Histidine kinase-like ATPases AC028_13950 SM00388 His Kinase A (phosphoacceptor) domain AC028_13950 SM00448 cheY-homologous receiver domain AC028_14005 SM00387 Histidine kinase-like ATPases AC028_14005 SM00388 His Kinase A (phosphoacceptor) domain AC028_14005 SM00448 cheY-homologous receiver domain AC028_14025 SM00382 ATPases associated with a variety of cellular activities AC028_14025 SM00930 AC028_14025 AC028_14065 SM00986 Uracil DNA glycosylase superfamily AC028_14065 SM00987 UreE urease accessory protein, C-terminal domain AC028_14135 SM00382 ATPases associated with a variety of cellular activities AC028_14150 SM00830 Chorismate mutase type II AC028_14165 SM00387 Histidine kinase-like ATPases AC028_14170 SM00382 ATPases associated with a variety of cellular activities AC028_14170 SM00448 cheY-homologous receiver domain AC028_14195 SM00382 ATPases associated with a variety of cellular activities AC028_14300 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AC028_14320 SM01126 AC028_14320 AC028_14350 SM00487 DEAD-like helicases superfamily AC028_14350 SM00490 helicase superfamily c-terminal domain AC028_14385 SM00116 Domain in cystathionine beta-synthase and other proteins. AC028_14410 SM00382 ATPases associated with a variety of cellular activities AC028_14465 SM01126 AC028_14465 AC028_14510 SM00893 Electron transfer flavoprotein domain AC028_14515 SM00893 Electron transfer flavoprotein domain AC028_14540 SM00984 UDP binding domain AC028_14555 SM00882 Coenzyme A transferase AC028_14560 SM00882 Coenzyme A transferase AC028_14585 SM00382 ATPases associated with a variety of cellular activities AC028_14600 SM01126 AC028_14600 AC028_14625 SM00382 ATPases associated with a variety of cellular activities AC028_14710 SM00481 DNA polymerase alpha chain like domain AC028_14750 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AC028_14780 SM00267 diguanylate cyclase AC028_14805 SM00972 Spore Coat Protein U domain AC028_14820 SM00972 Spore Coat Protein U domain AC028_14830 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AC028_14850 SM01172 AC028_14850 AC028_14855 SM00710 Parallel beta-helix repeats AC028_14855 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AC028_14880 SM00434 DNA Topoisomerase IV AC028_14885 SM00342 helix_turn_helix, arabinose operon control protein AC028_14890 SM00347 helix_turn_helix multiple antibiotic resistance protein AC028_14915 SM01217 AC028_14915 AC028_14920 SM00631 AC028_14920 AC028_14950 SM00347 helix_turn_helix multiple antibiotic resistance protein AC028_14970 SM00382 ATPases associated with a variety of cellular activities AC028_14985 SM00947 Carbonic anhydrase AC028_15000 SM00357 Cold shock protein domain AC028_15115 SM00267 diguanylate cyclase AC028_15150 SM00465 GIY-YIG type nucleases (URI domain) AC028_15155 SM00382 ATPases associated with a variety of cellular activities AC028_15185 SM01126 AC028_15185 AC028_15210 SM00965 Secretin and TonB N terminus short domain AC028_15235 SM01126 AC028_15235 AC028_15250 SM01126 AC028_15250 AC028_15285 SM00642 Alpha-amylase domain AC028_15300 SM00354 helix_turn _helix lactose operon repressor AC028_15310 SM00822 AC028_15310 AC028_15325 SM00448 cheY-homologous receiver domain AC028_15325 SM00862 Transcriptional regulatory protein, C terminal AC028_15330 SM00387 Histidine kinase-like ATPases AC028_15330 SM00388 His Kinase A (phosphoacceptor) domain AC028_15340 SM00421 helix_turn_helix, Lux Regulon AC028_15340 SM00448 cheY-homologous receiver domain AC028_15380 SM00387 Histidine kinase-like ATPases AC028_15380 SM00388 His Kinase A (phosphoacceptor) domain AC028_15380 SM00448 cheY-homologous receiver domain AC028_15395 SM00919 Malic enzyme, NAD binding domain AC028_15395 SM01274 AC028_15395 AC028_15405 SM00530 Helix-turn-helix XRE-family like proteins AC028_15415 SM01126 AC028_15415 AC028_15420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_15495 SM00271 DnaJ molecular chaperone homology domain AC028_15535 SM00382 ATPases associated with a variety of cellular activities AC028_15560 SM00861 Transketolase, pyrimidine binding domain AC028_15570 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AC028_15605 SM00116 Domain in cystathionine beta-synthase and other proteins. AC028_15605 SM01091 Transporter associated domain AC028_15635 SM00382 ATPases associated with a variety of cellular activities AC028_15640 SM00345 helix_turn_helix gluconate operon transcriptional repressor AC028_15655 SM00984 UDP binding domain AC028_15675 SM00354 helix_turn _helix lactose operon repressor AC028_15695 SM01018 B12 binding domain AC028_15705 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AC028_15765 SM00316 Ribosomal protein S1-like RNA-binding domain AC028_15765 SM00357 Cold shock protein domain AC028_15765 SM00955 AC028_15765 AC028_15775 SM01126 AC028_15775 AC028_15785 SM00967 RNA 2'-O ribose methyltransferase substrate binding AC028_15790 SM00267 diguanylate cyclase AC028_15795 SM00479 AC028_15795 AC028_15810 SM00382 ATPases associated with a variety of cellular activities AC028_15845 SM00947 Carbonic anhydrase AC028_15855 SM00478 endonuclease III AC028_15880 SM00450 Rhodanese Homology Domain AC028_15890 SM00644 AC028_15890 AC028_15910 SM00382 ATPases associated with a variety of cellular activities AC028_15915 SM00981 AC028_15915 AC028_15940 SM00479 AC028_15940 AC028_15965 SM00947 Carbonic anhydrase AC028_16010 SM00421 helix_turn_helix, Lux Regulon AC028_16010 SM00448 cheY-homologous receiver domain AC028_16080 SM00968 SMC proteins Flexible Hinge Domain AC028_16085 SM00771 ZipA, C-terminal domain (FtsZ-binding) AC028_16100 SM00292 breast cancer carboxy-terminal domain AC028_16100 SM00532 Ligase N family AC028_16120 SM00434 DNA Topoisomerase IV AC028_16125 SM00564 beta-propeller repeat AC028_16165 SM00345 helix_turn_helix gluconate operon transcriptional repressor AC028_16165 SM00866 AC028_16165 AC028_16185 SM00240 Forkhead associated domain AC028_16205 SM00830 Chorismate mutase type II AC028_16250 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_16250 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_16260 SM00347 helix_turn_helix multiple antibiotic resistance protein AC028_16275 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AC028_16275 SM00091 PAS domain AC028_16275 SM00387 Histidine kinase-like ATPases AC028_16275 SM00388 His Kinase A (phosphoacceptor) domain AC028_16275 SM00448 cheY-homologous receiver domain AC028_16280 SM00448 cheY-homologous receiver domain AC028_16285 SM00382 ATPases associated with a variety of cellular activities AC028_16290 SM00091 PAS domain AC028_16290 SM00387 Histidine kinase-like ATPases AC028_16290 SM00388 His Kinase A (phosphoacceptor) domain AC028_16290 SM00448 cheY-homologous receiver domain AC028_16440 SM00729 Elongator protein 3, MiaB family, Radical SAM AC028_16450 SM00382 ATPases associated with a variety of cellular activities AC028_16475 SM00116 Domain in cystathionine beta-synthase and other proteins. AC028_16475 SM01091 Transporter associated domain AC028_16500 SM00387 Histidine kinase-like ATPases AC028_16500 SM00433 TopoisomeraseII AC028_16525 SM01192 AC028_16525 AC028_16525 SM01193 AC028_16525 AC028_16550 SM00463 Small MutS-related domain AC028_16570 SM00257 Lysin motif AC028_16580 SM01103 AC028_16580 AC028_16590 SM00382 ATPases associated with a variety of cellular activities AC028_16630 SM00382 ATPases associated with a variety of cellular activities AC028_16640 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AC028_16655 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AC028_16655 SM00091 PAS domain AC028_16655 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_16710 SM00670 Large family of predicted nucleotide-binding domains AC028_16730 SM01130 AC028_16730 AC028_16755 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AC028_16800 SM00758 AC028_16800 AC028_16835 SM01126 AC028_16835 AC028_16910 SM00052 Putative diguanylate phosphodiesterase AC028_16910 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AC028_16910 SM00267 diguanylate cyclase AC028_16920 SM00448 cheY-homologous receiver domain AC028_16925 SM00387 Histidine kinase-like ATPases AC028_16935 SM00014 Acid phosphatase homologues AC028_17030 SM00100 Cyclic nucleotide-monophosphate binding domain AC028_17030 SM00419 helix_turn_helix, cAMP Regulatory protein AC028_17095 SM01126 AC028_17095 AC028_17110 SM01007 Class II Aldolase and Adducin N-terminal domain AC028_17155 SM00841 Elongation factor P, C-terminal AC028_17155 SM01185 AC028_17155 AC028_17160 SM00822 AC028_17160 AC028_17180 SM00899 AC028_17180 AC028_17215 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AC028_17225 SM00851 MGS-like domain AC028_17225 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AC028_17250 SM00850 LytTr DNA-binding domain AC028_17255 SM00937 AC028_17255 AC028_17265 SM00448 cheY-homologous receiver domain AC028_17265 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AC028_17275 SM00073 Histidine Phosphotransfer domain AC028_17275 SM00387 Histidine kinase-like ATPases AC028_17275 SM00388 His Kinase A (phosphoacceptor) domain AC028_17275 SM00448 cheY-homologous receiver domain AC028_17305 SM00966 SpoVT / AbrB like domain AC028_17325 SM00052 Putative diguanylate phosphodiesterase AC028_17325 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AC028_17325 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AC028_17325 SM00091 PAS domain AC028_17325 SM00267 diguanylate cyclase AC028_17330 SM00448 cheY-homologous receiver domain AC028_17340 SM00138 Methyltransferase, chemotaxis proteins AC028_17345 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_17345 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_17355 SM00260 Two component signalling adaptor domain AC028_17365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_17365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_17370 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_17370 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_17375 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_17375 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_17380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_17380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_17385 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_17385 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_17395 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_17395 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_17405 SM01126 AC028_17405 AC028_17410 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_17420 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_17420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_17425 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_17425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_17425 SM01049 AC028_17425 AC028_17440 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_17440 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_17445 SM00073 Histidine Phosphotransfer domain AC028_17445 SM00260 Two component signalling adaptor domain AC028_17445 SM00387 Histidine kinase-like ATPases AC028_17445 SM01231 AC028_17445 AC028_17450 SM00448 cheY-homologous receiver domain AC028_17460 SM00260 Two component signalling adaptor domain AC028_17490 SM01126 AC028_17490 AC028_17515 SM01126 AC028_17515 AC028_17545 SM00073 Histidine Phosphotransfer domain AC028_17545 SM00260 Two component signalling adaptor domain AC028_17545 SM00387 Histidine kinase-like ATPases AC028_17545 SM01231 AC028_17545 AC028_17555 SM00448 cheY-homologous receiver domain AC028_17570 SM00382 ATPases associated with a variety of cellular activities AC028_17570 SM00962 SRP54-type protein, GTPase domain AC028_17585 SM00052 Putative diguanylate phosphodiesterase AC028_17585 SM00267 diguanylate cyclase AC028_17590 SM00267 diguanylate cyclase AC028_17615 SM01126 AC028_17615 AC028_17655 SM00382 ATPases associated with a variety of cellular activities AC028_17685 SM01126 AC028_17685 AC028_17720 SM01126 AC028_17720 AC028_17765 SM00382 ATPases associated with a variety of cellular activities AC028_17770 SM00448 cheY-homologous receiver domain AC028_17780 SM00421 helix_turn_helix, Lux Regulon AC028_17780 SM00448 cheY-homologous receiver domain AC028_17820 SM00047 Lysozyme subfamily 2 AC028_17865 SM00260 Two component signalling adaptor domain AC028_17865 SM00448 cheY-homologous receiver domain AC028_17870 SM00858 AC028_17870 AC028_17885 SM00387 Histidine kinase-like ATPases AC028_17890 SM00052 Putative diguanylate phosphodiesterase AC028_17890 SM00267 diguanylate cyclase AC028_17890 SM00448 cheY-homologous receiver domain AC028_17895 SM00091 PAS domain AC028_17895 SM00387 Histidine kinase-like ATPases AC028_17900 SM00052 Putative diguanylate phosphodiesterase AC028_17900 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AC028_17900 SM00091 PAS domain AC028_17900 SM00267 diguanylate cyclase AC028_17910 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_17935 SM00382 ATPases associated with a variety of cellular activities AC028_17935 SM01086 C-terminal, D2-small domain, of ClpB protein AC028_17940 SM00316 Ribosomal protein S1-like RNA-binding domain AC028_17960 SM00382 ATPases associated with a variety of cellular activities AC028_17960 SM00843 AC028_17960 AC028_17980 SM00382 ATPases associated with a variety of cellular activities AC028_18005 SM00562 AC028_18005 AC028_18015 SM00028 Tetratricopeptide repeats AC028_18030 SM00564 beta-propeller repeat AC028_18035 SM00382 ATPases associated with a variety of cellular activities AC028_18040 SM00852 Probable molybdopterin binding domain AC028_18045 SM00450 Rhodanese Homology Domain AC028_18090 SM00852 Probable molybdopterin binding domain AC028_18105 SM00342 helix_turn_helix, arabinose operon control protein AC028_18110 SM00822 AC028_18110 AC028_18130 SM00529 Helix-turn-helix diphteria tox regulatory element AC028_18140 SM00479 AC028_18140 AC028_18210 SM00316 Ribosomal protein S1-like RNA-binding domain AC028_18210 SM00732 Likely ribonuclease with RNase H fold. AC028_18220 SM00448 cheY-homologous receiver domain AC028_18310 SM00382 ATPases associated with a variety of cellular activities AC028_18360 SM00382 ATPases associated with a variety of cellular activities AC028_18370 SM00849 Metallo-beta-lactamase superfamily AC028_18385 SM00382 ATPases associated with a variety of cellular activities AC028_18400 SM00226 Low molecular weight phosphatase family AC028_18425 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AC028_18425 SM00465 GIY-YIG type nucleases (URI domain) AC028_18455 SM00984 UDP binding domain AC028_18475 SM00450 Rhodanese Homology Domain AC028_18480 SM00421 helix_turn_helix, Lux Regulon AC028_18480 SM00448 cheY-homologous receiver domain AC028_18490 SM00363 S4 RNA-binding domain AC028_18555 SM01126 AC028_18555 AC028_18560 SM01126 AC028_18560 AC028_18570 SM00448 cheY-homologous receiver domain AC028_18570 SM00911 HWE histidine kinase AC028_18595 SM01126 AC028_18595 AC028_18680 SM01034 Sensors of blue-light using FAD AC028_18685 SM01126 AC028_18685 AC028_18690 SM00052 Putative diguanylate phosphodiesterase AC028_18760 SM00342 helix_turn_helix, arabinose operon control protein AC028_18765 SM00387 Histidine kinase-like ATPases AC028_18775 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_18845 SM01126 AC028_18845 AC028_18870 SM00116 Domain in cystathionine beta-synthase and other proteins. AC028_18870 SM01240 AC028_18870 AC028_18895 SM00822 AC028_18895 AC028_18905 SM00028 Tetratricopeptide repeats AC028_18915 SM00411 bacterial (prokaryotic) histone like domain AC028_18920 SM00316 Ribosomal protein S1-like RNA-binding domain AC028_18995 SM00354 helix_turn _helix lactose operon repressor AC028_19020 SM00363 S4 RNA-binding domain AC028_19045 SM00382 ATPases associated with a variety of cellular activities AC028_19095 SM00357 Cold shock protein domain AC028_19100 SM00382 ATPases associated with a variety of cellular activities AC028_19105 SM00382 ATPases associated with a variety of cellular activities AC028_19145 SM00530 Helix-turn-helix XRE-family like proteins AC028_19150 SM00382 ATPases associated with a variety of cellular activities AC028_19175 SM01126 AC028_19175 AC028_19245 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AC028_19260 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AC028_19275 SM00859 Semialdehyde dehydrogenase, NAD binding domain AC028_19315 SM00840 AC028_19315 AC028_19340 SM01234 AC028_19340 AC028_19375 SM00849 Metallo-beta-lactamase superfamily AC028_19390 SM01126 AC028_19390 AC028_19410 SM01126 AC028_19410 AC028_19430 SM00841 Elongation factor P, C-terminal AC028_19430 SM01185 AC028_19430 AC028_19440 SM00052 Putative diguanylate phosphodiesterase AC028_19440 SM00267 diguanylate cyclase AC028_19440 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_19475 SM00382 ATPases associated with a variety of cellular activities AC028_19480 SM00382 ATPases associated with a variety of cellular activities AC028_19480 SM00487 DEAD-like helicases superfamily AC028_19480 SM00490 helicase superfamily c-terminal domain AC028_19505 SM00357 Cold shock protein domain AC028_19510 SM01322 AC028_19510 AC028_19520 SM00052 Putative diguanylate phosphodiesterase AC028_19520 SM00267 diguanylate cyclase AC028_19535 SM00822 AC028_19535 AC028_19560 SM00646 AC028_19560 AC028_19595 SM00474 3'-5' exonuclease AC028_19610 SM00528 Domain in histone-like proteins of HNS family AC028_19625 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AC028_19625 SM00267 diguanylate cyclase AC028_19630 SM00260 Two component signalling adaptor domain AC028_19635 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_19635 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_19645 SM00487 DEAD-like helicases superfamily AC028_19645 SM00490 helicase superfamily c-terminal domain AC028_19700 SM00729 Elongator protein 3, MiaB family, Radical SAM AC028_19725 SM00116 Domain in cystathionine beta-synthase and other proteins. AC028_19725 SM01091 Transporter associated domain AC028_19760 SM00382 ATPases associated with a variety of cellular activities AC028_19790 SM01230 AC028_19790 AC028_19800 SM01230 AC028_19800 AC028_19810 SM00267 diguanylate cyclase AC028_19810 SM00448 cheY-homologous receiver domain AC028_19825 SM01126 AC028_19825 AC028_19865 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AC028_19865 SM00091 PAS domain AC028_19865 SM00387 Histidine kinase-like ATPases AC028_19865 SM00388 His Kinase A (phosphoacceptor) domain AC028_19865 SM00448 cheY-homologous receiver domain AC028_19865 SM01079 AC028_19865 AC028_19870 SM00448 cheY-homologous receiver domain AC028_19870 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AC028_19925 SM00354 helix_turn _helix lactose operon repressor AC028_19975 SM01323 AC028_19975 AC028_19990 SM00344 helix_turn_helix ASNC type AC028_20080 SM00387 Histidine kinase-like ATPases AC028_20090 SM01126 AC028_20090 AC028_20105 SM01126 AC028_20105 AC028_20155 SM00944 Pro-kumamolisin, activation domain AC028_20205 SM01130 AC028_20205 AC028_20230 SM00342 helix_turn_helix, arabinose operon control protein AC028_20235 SM00382 ATPases associated with a variety of cellular activities AC028_20235 SM00962 SRP54-type protein, GTPase domain AC028_20235 SM00963 SRP54-type protein, helical bundle domain AC028_20240 SM00478 endonuclease III AC028_20250 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AC028_20250 SM00091 PAS domain AC028_20250 SM00387 Histidine kinase-like ATPases AC028_20250 SM00388 His Kinase A (phosphoacceptor) domain AC028_20250 SM00448 cheY-homologous receiver domain AC028_20265 SM00465 GIY-YIG type nucleases (URI domain) AC028_20295 SM00507 HNH nucleases AC028_20300 SM00861 Transketolase, pyrimidine binding domain AC028_20325 SM00849 Metallo-beta-lactamase superfamily AC028_20410 SM00422 helix_turn_helix, mercury resistance AC028_20415 SM00411 bacterial (prokaryotic) histone like domain AC028_20420 SM00873 B3/4 domain AC028_20420 SM00874 tRNA synthetase B5 domain AC028_20420 SM00896 Ferredoxin-fold anticodon binding domain AC028_20445 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AC028_20450 SM00354 helix_turn _helix lactose operon repressor AC028_20460 SM01126 AC028_20460 AC028_20470 SM01126 AC028_20470 AC028_20505 SM00487 DEAD-like helicases superfamily AC028_20505 SM00490 helicase superfamily c-terminal domain AC028_20550 SM01126 AC028_20550 AC028_20600 SM01001 AIR carboxylase AC028_20620 SM00316 Ribosomal protein S1-like RNA-binding domain AC028_20620 SM00322 K homology RNA-binding domain AC028_20625 SM01387 AC028_20625 AC028_20645 SM00316 Ribosomal protein S1-like RNA-binding domain AC028_20645 SM00322 K homology RNA-binding domain AC028_20695 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AC028_20700 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AC028_20745 SM00822 AC028_20745 AC028_20765 SM00052 Putative diguanylate phosphodiesterase AC028_20765 SM00267 diguanylate cyclase AC028_20765 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_20840 SM00859 Semialdehyde dehydrogenase, NAD binding domain AC028_20870 SM00257 Lysin motif AC028_20900 SM00729 Elongator protein 3, MiaB family, Radical SAM AC028_20965 SM01160 AC028_20965 AC028_21020 SM00098 Alkaline phosphatase homologues AC028_21025 SM00977 TilS substrate C-terminal domain AC028_21075 SM00316 Ribosomal protein S1-like RNA-binding domain AC028_21150 SM01126 AC028_21150 AC028_21220 SM00382 ATPases associated with a variety of cellular activities AC028_21235 SM01126 AC028_21235 AC028_21285 SM00645 Papain family cysteine protease AC028_21295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_21295 SM00387 Histidine kinase-like ATPases AC028_21295 SM00388 His Kinase A (phosphoacceptor) domain AC028_21300 SM00448 cheY-homologous receiver domain AC028_21300 SM00862 Transcriptional regulatory protein, C terminal AC028_21315 SM01126 AC028_21315 AC028_21320 SM00487 DEAD-like helicases superfamily AC028_21320 SM00490 helicase superfamily c-terminal domain AC028_21320 SM00982 AC028_21320 AC028_21320 SM01058 CarD-like/TRCF domain AC028_21330 SM00073 Histidine Phosphotransfer domain AC028_21330 SM00260 Two component signalling adaptor domain AC028_21330 SM00387 Histidine kinase-like ATPases AC028_21330 SM01231 AC028_21330 AC028_21335 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AC028_21335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AC028_21340 SM00260 Two component signalling adaptor domain AC028_21395 SM00857 Resolvase, N terminal domain