locus-tag class description TP45_00005 PF11638 DnaA N-terminal domain TP45_00005 PF08299 Bacterial dnaA protein helix-turn-helix TP45_00005 PF00308 Bacterial dnaA protein TP45_00010 PF02767 DNA polymerase III beta subunit, central domain TP45_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain TP45_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain TP45_00015 PF02463 RecF/RecN/SMC N terminal domain TP45_00020 PF01751 Toprim domain TP45_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_00020 PF18053 DNA gyrase B subunit insert domain TP45_00020 PF00986 DNA gyrase B subunit, carboxyl terminus TP45_00020 PF00204 DNA gyrase B TP45_00030 PF01435 Peptidase family M48 TP45_00040 PF03544 Gram-negative bacterial TonB protein C-terminal TP45_00045 PF01618 MotA/TolQ/ExbB proton channel family TP45_00050 PF02472 Biopolymer transport protein ExbD/TolR TP45_00055 PF02472 Biopolymer transport protein ExbD/TolR TP45_00060 PF02472 Biopolymer transport protein ExbD/TolR TP45_00065 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ TP45_00075 PF13091 PLD-like domain TP45_00075 PF13396 Phospholipase_D-nuclease N-terminal TP45_00090 PF04055 Radical SAM superfamily TP45_00100 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) TP45_00110 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TP45_00110 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TP45_00115 PF13180 PDZ domain TP45_00115 PF03572 Peptidase family S41 TP45_00120 PF01551 Peptidase family M23 TP45_00130 PF04389 Peptidase family M28 TP45_00140 PF00150 Cellulase (glycosyl hydrolase family 5) TP45_00145 PF00150 Cellulase (glycosyl hydrolase family 5) TP45_00155 PF00150 Cellulase (glycosyl hydrolase family 5) TP45_00160 PF00107 Zinc-binding dehydrogenase TP45_00160 PF08240 Alcohol dehydrogenase GroES-like domain TP45_00195 PF00881 Nitroreductase family TP45_00200 PF04264 YceI-like domain TP45_00210 PF00328 Histidine phosphatase superfamily (branch 2) TP45_00225 PF16957 Malonate decarboxylase, alpha subunit, transporter TP45_00230 PF06857 Malonate decarboxylase delta subunit (MdcD) TP45_00235 PF01039 Carboxyl transferase domain TP45_00245 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG TP45_00250 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase TP45_00255 PF00698 Acyl transferase domain TP45_00265 PF07729 FCD domain TP45_00265 PF00392 Bacterial regulatory proteins, gntR family TP45_00300 PF07745 Glycosyl hydrolase family 53 TP45_00305 PF17831 Pyruvate dehydrogenase E1 component middle domain TP45_00305 PF00456 Transketolase, thiamine diphosphate binding domain TP45_00325 PF01527 Transposase TP45_00330 PF13683 Integrase core domain TP45_00330 PF13276 HTH-like domain TP45_00345 PF01609 Transposase DDE domain TP45_00345 PF05598 Transposase domain (DUF772) TP45_00355 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain TP45_00380 PF00155 Aminotransferase class I and II TP45_00385 PF00593 TonB dependent receptor TP45_00385 PF07715 TonB-dependent Receptor Plug Domain TP45_00400 PF00171 Aldehyde dehydrogenase family TP45_00420 PF02735 Ku70/Ku80 beta-barrel domain TP45_00425 PF01070 FMN-dependent dehydrogenase TP45_00435 PF07730 Histidine kinase TP45_00440 PF00072 Response regulator receiver domain TP45_00440 PF00196 Bacterial regulatory proteins, luxR family TP45_00460 PF18500 CadC C-terminal domain 1 TP45_00460 PF00486 Transcriptional regulatory protein, C terminal TP45_00465 PF12241 Trans-2-enoyl-CoA reductase catalytic region TP45_00465 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase TP45_00465 PF07055 Enoyl reductase FAD binding domain TP45_00475 PF00294 pfkB family carbohydrate kinase TP45_00485 PF01609 Transposase DDE domain TP45_00485 PF05598 Transposase domain (DUF772) TP45_00510 PF07726 ATPase family associated with various cellular activities (AAA) TP45_00510 PF17863 AAA lid domain TP45_00560 PF00083 Sugar (and other) transporter TP45_00560 PF08946 Osmosensory transporter coiled coil TP45_00565 PF00085 Thioredoxin TP45_00585 PF13344 Haloacid dehalogenase-like hydrolase TP45_00585 PF00293 NUDIX domain TP45_00620 PF05532 CsbD-like TP45_00650 PF00665 Integrase core domain TP45_00650 PF13276 HTH-like domain TP45_00650 PF13333 Integrase core domain TP45_00655 PF01527 Transposase TP45_00660 PF01527 Transposase TP45_00665 PF13683 Integrase core domain TP45_00665 PF13276 HTH-like domain TP45_00675 PF01872 RibD C-terminal domain TP45_00710 PF01527 Transposase TP45_00715 PF13276 HTH-like domain TP45_00715 PF13333 Integrase core domain TP45_00715 PF00665 Integrase core domain TP45_00725 PF01609 Transposase DDE domain TP45_00725 PF05598 Transposase domain (DUF772) TP45_00730 PF02525 Flavodoxin-like fold TP45_00750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_00750 PF03466 LysR substrate binding domain TP45_00760 PF00106 short chain dehydrogenase TP45_00775 PF03006 Haemolysin-III related TP45_00780 PF00270 DEAD/DEAH box helicase TP45_00780 PF09369 Domain of unknown function (DUF1998) TP45_00780 PF00271 Helicase conserved C-terminal domain TP45_00860 PF01493 GXGXG motif TP45_00860 PF01645 Conserved region in glutamate synthase TP45_00860 PF04898 Glutamate synthase central domain TP45_00860 PF00310 Glutamine amidotransferases class-II TP45_00865 PF07992 Pyridine nucleotide-disulphide oxidoreductase TP45_00865 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TP45_00900 PF03710 Glutamate-ammonia ligase adenylyltransferase TP45_00900 PF08335 GlnD PII-uridylyltransferase TP45_00930 PF00793 DAHP synthetase I family TP45_00935 PF00593 TonB dependent receptor TP45_00935 PF07715 TonB-dependent Receptor Plug Domain TP45_00945 PF00118 TCP-1/cpn60 chaperonin family TP45_00950 PF00166 Chaperonin 10 Kd subunit TP45_00955 PF04231 Endonuclease I TP45_00960 PF03091 CutA1 divalent ion tolerance protein TP45_00965 PF11412 Disulphide bond corrector protein DsbC TP45_00965 PF02683 Cytochrome C biogenesis protein transmembrane region TP45_00970 PF01220 Dehydroquinase class II TP45_00975 PF00364 Biotin-requiring enzyme TP45_00985 PF02785 Biotin carboxylase C-terminal domain TP45_00985 PF00289 Biotin carboxylase, N-terminal domain TP45_00985 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TP45_01010 PF01381 Helix-turn-helix TP45_01025 PF02954 Bacterial regulatory protein, Fis family TP45_01055 PF00782 Dual specificity phosphatase, catalytic domain TP45_01060 PF12146 Serine aminopeptidase, S33 TP45_01060 PF12147 Putative methyltransferase TP45_01065 PF01066 CDP-alcohol phosphatidyltransferase TP45_01070 PF01808 AICARFT/IMPCHase bienzyme TP45_01070 PF02142 MGS-like domain TP45_01080 PF02844 Phosphoribosylglycinamide synthetase, N domain TP45_01080 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TP45_01080 PF02843 Phosphoribosylglycinamide synthetase, C domain TP45_01090 PF12805 FUSC-like inner membrane protein yccS TP45_01095 PF07690 Major Facilitator Superfamily TP45_01105 PF07690 Major Facilitator Superfamily TP45_01120 PF17113 Regulatory signalling modulator protein AmpE TP45_01120 PF03186 CobD/Cbib protein TP45_01125 PF00293 NUDIX domain TP45_01125 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain TP45_01125 PF09297 NADH pyrophosphatase zinc ribbon domain TP45_01135 PF01521 Iron-sulphur cluster biosynthesis TP45_01155 PF00072 Response regulator receiver domain TP45_01155 PF00486 Transcriptional regulatory protein, C terminal TP45_01160 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TP45_01160 PF00072 Response regulator receiver domain TP45_01160 PF01627 Hpt domain TP45_01160 PF00512 His Kinase A (phospho-acceptor) domain TP45_01160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_01160 PF00672 HAMP domain TP45_01165 PF00210 Ferritin-like domain TP45_01175 PF00293 NUDIX domain TP45_01190 PF00380 Ribosomal protein S9/S16 TP45_01195 PF00572 Ribosomal protein L13 TP45_01200 PF03232 Ubiquinone biosynthesis protein COQ7 TP45_01205 PF00893 Small Multidrug Resistance protein TP45_01210 PF02675 S-adenosylmethionine decarboxylase TP45_01215 PF00027 Cyclic nucleotide-binding domain TP45_01215 PF00325 Bacterial regulatory proteins, crp family TP45_01225 PF00218 Indole-3-glycerol phosphate synthase TP45_01230 PF02885 Glycosyl transferase family, helical bundle domain TP45_01230 PF00591 Glycosyl transferase family, a/b domain TP45_01240 PF00117 Glutamine amidotransferase class-I TP45_01250 PF04715 Anthranilate synthase component I, N terminal region TP45_01250 PF00425 chorismate binding enzyme TP45_01255 PF00781 Diacylglycerol kinase catalytic domain TP45_01260 PF00583 Acetyltransferase (GNAT) family TP45_01265 PF00834 Ribulose-phosphate 3 epimerase family TP45_01275 PF00226 DnaJ domain TP45_01275 PF05099 Tellurite resistance protein TerB TP45_01280 PF01259 SAICAR synthetase TP45_01290 PF02868 Thermolysin metallopeptidase, alpha-helical domain TP45_01290 PF07504 Fungalysin/Thermolysin Propeptide Motif TP45_01290 PF01483 Proprotein convertase P-domain TP45_01290 PF01447 Thermolysin metallopeptidase, catalytic domain TP45_01305 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter TP45_01305 PF00361 Proton-conducting membrane transporter TP45_01305 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TP45_01305 PF13244 Domain of unknown function (DUF4040) TP45_01310 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TP45_01315 PF00361 Proton-conducting membrane transporter TP45_01325 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) TP45_01330 PF03334 Na+/H+ antiporter subunit TP45_01345 PF04209 homogentisate 1,2-dioxygenase TP45_01350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TP45_01355 PF01047 MarR family TP45_01365 PF00854 POT family TP45_01370 PF03301 Tryptophan 2,3-dioxygenase TP45_01380 PF00676 Dehydrogenase E1 component TP45_01385 PF02780 Transketolase, C-terminal domain TP45_01385 PF02779 Transketolase, pyrimidine binding domain TP45_01395 PF00364 Biotin-requiring enzyme TP45_01395 PF02817 e3 binding domain TP45_01395 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TP45_01400 PF00270 DEAD/DEAH box helicase TP45_01400 PF00271 Helicase conserved C-terminal domain TP45_01415 PF00873 AcrB/AcrD/AcrF family TP45_01430 PF02321 Outer membrane efflux protein TP45_01435 PF06903 VirK protein TP45_01460 PF13460 NAD(P)H-binding TP45_01465 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TP45_01465 PF00128 Alpha amylase, catalytic domain TP45_01475 PF00128 Alpha amylase, catalytic domain TP45_01480 PF02446 4-alpha-glucanotransferase TP45_01485 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TP45_01485 PF00128 Alpha amylase, catalytic domain TP45_01485 PF11941 Domain of unknown function (DUF3459) TP45_01490 PF00128 Alpha amylase, catalytic domain TP45_01490 PF02806 Alpha amylase, C-terminal all-beta domain TP45_01490 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TP45_01495 PF00534 Glycosyl transferases group 1 TP45_01495 PF08323 Starch synthase catalytic domain TP45_01500 PF00072 Response regulator receiver domain TP45_01500 PF00990 Diguanylate cyclase, GGDEF domain TP45_01505 PF05661 Protein of unknown function (DUF808) TP45_01510 PF03109 ABC1 family TP45_01515 PF00884 Sulfatase TP45_01520 PF12795 Mechanosensitive ion channel porin domain TP45_01520 PF00924 Mechanosensitive ion channel TP45_01520 PF12794 Mechanosensitive ion channel inner membrane domain 1 TP45_01560 PF05638 Type VI secretion system effector, Hcp TP45_01585 PF14602 Hexapeptide repeat of succinyl-transferase TP45_01585 PF12464 Maltose acetyltransferase TP45_01595 PF00580 UvrD/REP helicase N-terminal domain TP45_01595 PF13361 UvrD-like helicase C-terminal domain TP45_01605 PF13396 Phospholipase_D-nuclease N-terminal TP45_01605 PF13091 PLD-like domain TP45_01610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_01610 PF03466 LysR substrate binding domain TP45_01615 PF03737 Aldolase/RraA TP45_01620 PF04303 PrpF protein TP45_01625 PF04909 Amidohydrolase TP45_01630 PF00471 Ribosomal protein L33 TP45_01635 PF00830 Ribosomal L28 family TP45_01640 PF00873 AcrB/AcrD/AcrF family TP45_01645 PF13533 Biotin-lipoyl like TP45_01665 PF02527 rRNA small subunit methyltransferase G TP45_01670 PF16655 PhoD-like phosphatase, N-terminal domain TP45_01670 PF09423 PhoD-like phosphatase TP45_01675 PF09423 PhoD-like phosphatase TP45_01675 PF16655 PhoD-like phosphatase, N-terminal domain TP45_01680 PF01648 4'-phosphopantetheinyl transferase superfamily TP45_01690 PF04226 Transglycosylase associated protein TP45_01700 PF03372 Endonuclease/Exonuclease/phosphatase family TP45_01705 PF00480 ROK family TP45_01715 PF09312 SurA N-terminal domain TP45_01715 PF00639 PPIC-type PPIASE domain TP45_01725 PF00474 Sodium:solute symporter family TP45_01730 PF04341 Protein of unknown function, DUF485 TP45_01740 PF13193 AMP-binding enzyme C-terminal domain TP45_01740 PF00501 AMP-binding enzyme TP45_01740 PF16177 Acetyl-coenzyme A synthetase N-terminus TP45_01745 PF00072 Response regulator receiver domain TP45_01745 PF00196 Bacterial regulatory proteins, luxR family TP45_01770 PF04616 Glycosyl hydrolases family 43 TP45_01770 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain TP45_01780 PF00248 Aldo/keto reductase family TP45_01795 PF01557 Fumarylacetoacetate (FAA) hydrolase family TP45_01800 PF13378 Enolase C-terminal domain-like TP45_01800 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TP45_01805 PF05336 L-rhamnose mutarotase TP45_01810 PF07690 Major Facilitator Superfamily TP45_01815 PF01614 Bacterial transcriptional regulator TP45_01815 PF09339 IclR helix-turn-helix domain TP45_01820 PF02659 Putative manganese efflux pump TP45_01825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_01825 PF00512 His Kinase A (phospho-acceptor) domain TP45_01835 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain TP45_01835 PF06165 Glycosyltransferase family 36 TP45_01850 PF13360 PQQ-like domain TP45_01850 PF13570 PQQ-like domain TP45_01850 PF01011 PQQ enzyme repeat TP45_01870 PF04357 TamB, inner membrane protein subunit of TAM complex TP45_01875 PF17243 POTRA domain TamA domain 1 TP45_01875 PF01103 Surface antigen TP45_01890 PF01609 Transposase DDE domain TP45_01890 PF05598 Transposase domain (DUF772) TP45_01900 PF01527 Transposase TP45_01905 PF13333 Integrase core domain TP45_01905 PF13276 HTH-like domain TP45_01905 PF00665 Integrase core domain TP45_01930 PF05598 Transposase domain (DUF772) TP45_01930 PF01609 Transposase DDE domain TP45_01940 PF02092 Glycyl-tRNA synthetase beta subunit TP45_01940 PF05746 DALR anticodon binding domain TP45_01945 PF02091 Glycyl-tRNA synthetase alpha subunit TP45_01950 PF00437 Type II/IV secretion system protein TP45_01950 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain TP45_01975 PF00117 Glutamine amidotransferase class-I TP45_01975 PF00958 GMP synthase C terminal domain TP45_01985 PF00902 Sec-independent protein translocase protein (TatC) TP45_01990 PF02416 mttA/Hcf106 family TP45_01995 PF02416 mttA/Hcf106 family TP45_02005 PF00762 Ferrochelatase TP45_02010 PF12697 Alpha/beta hydrolase family TP45_02025 PF04381 Putative exonuclease, RdgC TP45_02030 PF01171 PP-loop family TP45_02040 PF00356 Bacterial regulatory proteins, lacI family TP45_02045 PF07477 Glycosyl hydrolase family 67 C-terminus TP45_02045 PF07488 Glycosyl hydrolase family 67 middle domain TP45_02045 PF03648 Glycosyl hydrolase family 67 N-terminus TP45_02055 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TP45_02055 PF13378 Enolase C-terminal domain-like TP45_02060 PF04616 Glycosyl hydrolases family 43 TP45_02060 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain TP45_02070 PF05598 Transposase domain (DUF772) TP45_02070 PF01609 Transposase DDE domain TP45_02075 PF01232 Mannitol dehydrogenase Rossmann domain TP45_02075 PF08125 Mannitol dehydrogenase C-terminal domain TP45_02105 PF00171 Aldehyde dehydrogenase family TP45_02120 PF00202 Aminotransferase class-III TP45_02130 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TP45_02130 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TP45_02145 PF08450 SMP-30/Gluconolactonase/LRE-like region TP45_02150 PF00331 Glycosyl hydrolase family 10 TP45_02155 PF02837 Glycosyl hydrolases family 2, sugar binding domain TP45_02155 PF02836 Glycosyl hydrolases family 2, TIM barrel domain TP45_02155 PF16355 Domain of unknown function (DUF4982) TP45_02155 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 TP45_02155 PF00703 Glycosyl hydrolases family 2 TP45_02160 PF02614 Glucuronate isomerase TP45_02180 PF00553 Cellulose binding domain TP45_02180 PF00331 Glycosyl hydrolase family 10 TP45_02180 PF03422 Carbohydrate binding module (family 6) TP45_02200 PF04616 Glycosyl hydrolases family 43 TP45_02245 PF01527 Transposase TP45_02250 PF13276 HTH-like domain TP45_02250 PF13683 Integrase core domain TP45_02270 PF05819 NolX protein TP45_02280 PF03211 Pectate lyase TP45_02310 PF01313 Bacterial export proteins, family 3 TP45_02315 PF00813 FliP family TP45_02330 PF00771 FHIPEP family TP45_02335 PF01312 FlhB HrpN YscU SpaS Family TP45_02350 PF01514 Secretory protein of YscJ/FliF family TP45_02365 PF18269 T3SS EscN ATPase C-terminal domain TP45_02365 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TP45_02365 PF02874 ATP synthase alpha/beta family, beta-barrel domain TP45_02375 PF01311 Bacterial export proteins, family 1 TP45_02390 PF01464 Transglycosylase SLT domain TP45_02415 PF00004 ATPase family associated with various cellular activities (AAA) TP45_02415 PF10431 C-terminal, D2-small domain, of ClpB protein TP45_02415 PF17871 AAA lid domain TP45_02415 PF07724 AAA domain (Cdc48 subfamily) TP45_02425 PF00106 short chain dehydrogenase TP45_02440 PF00106 short chain dehydrogenase TP45_02450 PF13409 Glutathione S-transferase, N-terminal domain TP45_02485 PF00326 Prolyl oligopeptidase family TP45_02485 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region TP45_02495 PF07759 Protein of unknown function (DUF1615) TP45_02500 PF00990 Diguanylate cyclase, GGDEF domain TP45_02500 PF05230 MASE2 domain TP45_02520 PF00892 EamA-like transporter family TP45_02540 PF00324 Amino acid permease TP45_02550 PF01544 CorA-like Mg2+ transporter protein TP45_02560 PF01204 Trehalase TP45_02570 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain TP45_02570 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain TP45_02590 PF00990 Diguanylate cyclase, GGDEF domain TP45_02590 PF03707 Bacterial signalling protein N terminal repeat TP45_02590 PF00563 EAL domain TP45_02595 PF00672 HAMP domain TP45_02595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_02595 PF02203 Tar ligand binding domain homologue TP45_02600 PF00553 Cellulose binding domain TP45_02600 PF00150 Cellulase (glycosyl hydrolase family 5) TP45_02605 PF01740 STAS domain TP45_02605 PF00916 Sulfate permease family TP45_02610 PF08448 PAS fold TP45_02610 PF00990 Diguanylate cyclase, GGDEF domain TP45_02620 PF13632 Glycosyl transferase family group 2 TP45_02630 PF07694 5TMR of 5TMR-LYT TP45_02630 PF06580 Histidine kinase TP45_02635 PF04397 LytTr DNA-binding domain TP45_02635 PF00072 Response regulator receiver domain TP45_02640 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain TP45_02640 PF03900 Porphobilinogen deaminase, C-terminal domain TP45_02665 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain TP45_02665 PF00326 Prolyl oligopeptidase family TP45_02670 PF00155 Aminotransferase class I and II TP45_02675 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain TP45_02675 PF00326 Prolyl oligopeptidase family TP45_02680 PF04304 Protein of unknown function (DUF454) TP45_02690 PF01678 Diaminopimelate epimerase TP45_02700 PF00589 Phage integrase family TP45_02700 PF02899 Phage integrase, N-terminal SAM-like domain TP45_02705 PF00227 Proteasome subunit TP45_02710 PF07724 AAA domain (Cdc48 subfamily) TP45_02710 PF10431 C-terminal, D2-small domain, of ClpB protein TP45_02710 PF00004 ATPase family associated with various cellular activities (AAA) TP45_02720 PF13673 Acetyltransferase (GNAT) domain TP45_02725 PF13533 Biotin-lipoyl like TP45_02735 PF01209 ubiE/COQ5 methyltransferase family TP45_02740 PF00990 Diguanylate cyclase, GGDEF domain TP45_02740 PF00563 EAL domain TP45_02740 PF03707 Bacterial signalling protein N terminal repeat TP45_02745 PF01433 Peptidase family M1 domain TP45_02745 PF11838 ERAP1-like C-terminal domain TP45_02760 PF13360 PQQ-like domain TP45_02765 PF00497 Bacterial extracellular solute-binding proteins, family 3 TP45_02780 PF08240 Alcohol dehydrogenase GroES-like domain TP45_02780 PF00107 Zinc-binding dehydrogenase TP45_02790 PF01590 GAF domain TP45_02790 PF00158 Sigma-54 interaction domain TP45_02790 PF02954 Bacterial regulatory protein, Fis family TP45_02795 PF00294 pfkB family carbohydrate kinase TP45_02805 PF04085 rod shape-determining protein MreC TP45_02815 PF03717 Penicillin-binding Protein dimerisation domain TP45_02815 PF00905 Penicillin binding protein transpeptidase domain TP45_02820 PF01098 Cell cycle protein TP45_02825 PF00295 Glycosyl hydrolases family 28 TP45_02830 PF13406 Transglycosylase SLT domain TP45_02835 PF05036 Sporulation related domain TP45_02835 PF03330 Lytic transglycolase TP45_02840 PF00768 D-alanyl-D-alanine carboxypeptidase TP45_02840 PF07943 Penicillin-binding protein 5, C-terminal domain TP45_02850 PF04359 Protein of unknown function (DUF493) TP45_02855 PF03099 Biotin/lipoate A/B protein ligase family TP45_02860 PF04055 Radical SAM superfamily TP45_02860 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family TP45_02865 PF11818 C-terminal domain of tail specific protease (DUF3340) TP45_02865 PF17804 Tail specific protease N-terminal domain TP45_02865 PF00595 PDZ domain TP45_02865 PF03572 Peptidase family S41 TP45_02875 PF03466 LysR substrate binding domain TP45_02875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_02885 PF01467 Cytidylyltransferase-like TP45_02885 PF00293 NUDIX domain TP45_02920 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TP45_02920 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain TP45_02930 PF04972 BON domain TP45_02935 PF00360 Phytochrome region TP45_02935 PF01590 GAF domain TP45_02935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_02935 PF08446 PAS fold TP45_02935 PF00512 His Kinase A (phospho-acceptor) domain TP45_02940 PF00072 Response regulator receiver domain TP45_02945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_02945 PF00512 His Kinase A (phospho-acceptor) domain TP45_02950 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TP45_02995 PF03958 Bacterial type II/III secretion system short domain TP45_02995 PF00263 Bacterial type II and III secretion system protein TP45_03000 PF00437 Type II/IV secretion system protein TP45_03005 PF00482 Type II secretion system (T2SS), protein F TP45_03010 PF07963 Prokaryotic N-terminal methylation motif TP45_03010 PF08334 Type II secretion system (T2SS), protein G TP45_03015 PF12019 Type II transport protein GspH TP45_03015 PF07963 Prokaryotic N-terminal methylation motif TP45_03020 PF07963 Prokaryotic N-terminal methylation motif TP45_03020 PF02501 Type II secretion system (T2SS), protein I TP45_03025 PF07963 Prokaryotic N-terminal methylation motif TP45_03025 PF11612 Type II secretion system (T2SS), protein J TP45_03030 PF03934 Type II secretion system (T2SS), protein K TP45_03055 PF00703 Glycosyl hydrolases family 2 TP45_03055 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 TP45_03055 PF16355 Domain of unknown function (DUF4982) TP45_03055 PF02837 Glycosyl hydrolases family 2, sugar binding domain TP45_03055 PF02836 Glycosyl hydrolases family 2, TIM barrel domain TP45_03075 PF07690 Major Facilitator Superfamily TP45_03080 PF00356 Bacterial regulatory proteins, lacI family TP45_03085 PF01380 SIS domain TP45_03090 PF01979 Amidohydrolase family TP45_03105 PF01966 HD domain TP45_03105 PF01743 Poly A polymerase head domain TP45_03105 PF12627 Probable RNA and SrmB- binding site of polymerase A TP45_03110 PF00732 GMC oxidoreductase TP45_03110 PF05199 GMC oxidoreductase TP45_03115 PF00171 Aldehyde dehydrogenase family TP45_03120 PF02028 BCCT, betaine/carnitine/choline family transporter TP45_03130 PF01323 DSBA-like thioredoxin domain TP45_03140 PF00034 Cytochrome c TP45_03145 PF01926 50S ribosome-binding GTPase TP45_03150 PF10996 Beta-Casp domain TP45_03150 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TP45_03150 PF00753 Metallo-beta-lactamase superfamily TP45_03160 PF04107 Glutamate-cysteine ligase family 2(GCS2) TP45_03170 PF00512 His Kinase A (phospho-acceptor) domain TP45_03170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_03170 PF00672 HAMP domain TP45_03175 PF00486 Transcriptional regulatory protein, C terminal TP45_03175 PF00072 Response regulator receiver domain TP45_03190 PF02583 Metal-sensitive transcriptional repressor TP45_03195 PF00107 Zinc-binding dehydrogenase TP45_03195 PF08240 Alcohol dehydrogenase GroES-like domain TP45_03200 PF04828 Glutathione-dependent formaldehyde-activating enzyme TP45_03205 PF00756 Putative esterase TP45_03210 PF00155 Aminotransferase class I and II TP45_03210 PF00392 Bacterial regulatory proteins, gntR family TP45_03215 PF02567 Phenazine biosynthesis-like protein TP45_03220 PF00892 EamA-like transporter family TP45_03230 PF12848 ABC transporter TP45_03230 PF00005 ABC transporter TP45_03240 PF00464 Serine hydroxymethyltransferase TP45_03245 PF03477 ATP cone domain TP45_03255 PF01872 RibD C-terminal domain TP45_03255 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TP45_03265 PF00677 Lumazine binding domain TP45_03270 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TP45_03270 PF00925 GTP cyclohydrolase II TP45_03275 PF00885 6,7-dimethyl-8-ribityllumazine synthase TP45_03280 PF01029 NusB family TP45_03285 PF02769 AIR synthase related protein, C-terminal domain TP45_03285 PF00586 AIR synthase related protein, N-terminal domain TP45_03305 PF03814 Potassium-transporting ATPase A subunit TP45_03315 PF02669 K+-transporting ATPase, c chain TP45_03320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_03320 PF13492 GAF domain TP45_03320 PF00512 His Kinase A (phospho-acceptor) domain TP45_03320 PF13493 Domain of unknown function (DUF4118) TP45_03320 PF02702 Osmosensitive K+ channel His kinase sensor domain TP45_03325 PF00072 Response regulator receiver domain TP45_03325 PF00486 Transcriptional regulatory protein, C terminal TP45_03330 PF01565 FAD binding domain TP45_03330 PF02913 FAD linked oxidases, C-terminal domain TP45_03335 PF04307 LexA-binding, inner membrane-associated putative hydrolase TP45_03340 PF02021 Uncharacterised protein family UPF0102 TP45_03350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TP45_03360 PF02381 MraZ protein, putative antitoxin-like TP45_03365 PF01795 MraW methylase family TP45_03370 PF04999 Cell division protein FtsL TP45_03380 PF03717 Penicillin-binding Protein dimerisation domain TP45_03380 PF00905 Penicillin binding protein transpeptidase domain TP45_03385 PF08245 Mur ligase middle domain TP45_03385 PF01225 Mur ligase family, catalytic domain TP45_03385 PF02875 Mur ligase family, glutamate ligase domain TP45_03390 PF01225 Mur ligase family, catalytic domain TP45_03390 PF08245 Mur ligase middle domain TP45_03390 PF02875 Mur ligase family, glutamate ligase domain TP45_03395 PF00953 Glycosyl transferase family 4 TP45_03400 PF01098 Cell cycle protein TP45_03405 PF03033 Glycosyltransferase family 28 N-terminal domain TP45_03405 PF04101 Glycosyltransferase family 28 C-terminal domain TP45_03410 PF08245 Mur ligase middle domain TP45_03410 PF01225 Mur ligase family, catalytic domain TP45_03410 PF02875 Mur ligase family, glutamate ligase domain TP45_03415 PF01820 D-ala D-ala ligase N-terminus TP45_03415 PF07478 D-ala D-ala ligase C-terminus TP45_03420 PF08478 POTRA domain, FtsQ-type TP45_03420 PF03799 Cell division protein FtsQ TP45_03425 PF02491 SHS2 domain inserted in FTSA TP45_03430 PF12327 FtsZ family, C-terminal domain TP45_03430 PF00091 Tubulin/FtsZ family, GTPase domain TP45_03435 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase TP45_03445 PF01476 LysM domain TP45_03445 PF08525 Opacity-associated protein A N-terminal motif TP45_03445 PF01551 Peptidase family M23 TP45_03450 PF01043 SecA preprotein cross-linking domain TP45_03450 PF02810 SEC-C motif TP45_03450 PF07516 SecA Wing and Scaffold domain TP45_03450 PF07517 SecA DEAD-like domain TP45_03455 PF00293 NUDIX domain TP45_03465 PF02219 Methylenetetrahydrofolate reductase TP45_03475 PF08240 Alcohol dehydrogenase GroES-like domain TP45_03475 PF00698 Acyl transferase domain TP45_03475 PF16197 Ketoacyl-synthetase C-terminal extension TP45_03475 PF00550 Phosphopantetheine attachment site TP45_03475 PF02801 Beta-ketoacyl synthase, C-terminal domain TP45_03475 PF00109 Beta-ketoacyl synthase, N-terminal domain TP45_03475 PF08659 KR domain TP45_03475 PF00107 Zinc-binding dehydrogenase TP45_03475 PF14765 Polyketide synthase dehydratase TP45_03480 PF09286 Pro-kumamolisin, activation domain TP45_03480 PF00082 Subtilase family TP45_03490 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TP45_03495 PF00128 Alpha amylase, catalytic domain TP45_03520 PF00685 Sulfotransferase domain TP45_03530 PF13649 Methyltransferase domain TP45_03535 PF05221 S-adenosyl-L-homocysteine hydrolase TP45_03535 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TP45_03550 PF00311 Phosphoenolpyruvate carboxylase TP45_03570 PF01389 OmpA-like transmembrane domain TP45_03570 PF00691 OmpA family TP45_03585 PF00328 Histidine phosphatase superfamily (branch 2) TP45_03590 PF00438 S-adenosylmethionine synthetase, N-terminal domain TP45_03590 PF02772 S-adenosylmethionine synthetase, central domain TP45_03590 PF02773 S-adenosylmethionine synthetase, C-terminal domain TP45_03600 PF13649 Methyltransferase domain TP45_03605 PF01207 Dihydrouridine synthase (Dus) TP45_03615 PF00294 pfkB family carbohydrate kinase TP45_03620 PF01773 Na+ dependent nucleoside transporter N-terminus TP45_03620 PF07662 Na+ dependent nucleoside transporter C-terminus TP45_03620 PF07670 Nucleoside recognition TP45_03625 PF00248 Aldo/keto reductase family TP45_03635 PF07715 TonB-dependent Receptor Plug Domain TP45_03635 PF00593 TonB dependent receptor TP45_03655 PF00528 Binding-protein-dependent transport system inner membrane component TP45_03660 PF00005 ABC transporter TP45_03670 PF02668 Taurine catabolism dioxygenase TauD, TfdA family TP45_03680 PF00005 ABC transporter TP45_03685 PF13472 GDSL-like Lipase/Acylhydrolase family TP45_03690 PF00072 Response regulator receiver domain TP45_03690 PF00486 Transcriptional regulatory protein, C terminal TP45_03695 PF08521 Two-component sensor kinase N-terminal TP45_03695 PF00512 His Kinase A (phospho-acceptor) domain TP45_03695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_03705 PF01219 Prokaryotic diacylglycerol kinase TP45_03725 PF01790 Prolipoprotein diacylglyceryl transferase TP45_03730 PF00303 Thymidylate synthase TP45_03740 PF00186 Dihydrofolate reductase TP45_03745 PF00158 Sigma-54 interaction domain TP45_03750 PF08028 Acyl-CoA dehydrogenase, C-terminal domain TP45_03750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TP45_03755 PF00005 ABC transporter TP45_03760 PF00528 Binding-protein-dependent transport system inner membrane component TP45_03770 PF00296 Luciferase-like monooxygenase TP45_03775 PF03358 NADPH-dependent FMN reductase TP45_03785 PF01609 Transposase DDE domain TP45_03785 PF05598 Transposase domain (DUF772) TP45_03795 PF00296 Luciferase-like monooxygenase TP45_03800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TP45_03805 PF00528 Binding-protein-dependent transport system inner membrane component TP45_03815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TP45_03815 PF00005 ABC transporter TP45_03820 PF00149 Calcineurin-like phosphoesterase TP45_03825 PF04379 ApaG domain TP45_03830 PF00398 Ribosomal RNA adenine dimethylase TP45_03835 PF04166 Pyridoxal phosphate biosynthetic protein PdxA TP45_03840 PF00639 PPIC-type PPIASE domain TP45_03840 PF09312 SurA N-terminal domain TP45_03845 PF03968 OstA-like protein TP45_03845 PF04453 LPS transport system D TP45_03850 PF00850 Histone deacetylase domain TP45_03855 PF01923 Cobalamin adenosyltransferase TP45_03865 PF01494 FAD binding domain TP45_03870 PF01494 FAD binding domain TP45_03890 PF00392 Bacterial regulatory proteins, gntR family TP45_03890 PF07729 FCD domain TP45_03895 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase TP45_03900 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase TP45_03900 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit TP45_03905 PF03466 LysR substrate binding domain TP45_03905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_03910 PF13193 AMP-binding enzyme C-terminal domain TP45_03910 PF00501 AMP-binding enzyme TP45_03920 PF00378 Enoyl-CoA hydratase/isomerase TP45_03945 PF02894 Oxidoreductase family, C-terminal alpha/beta domain TP45_03945 PF01408 Oxidoreductase family, NAD-binding Rossmann fold TP45_03950 PF01728 FtsJ-like methyltransferase TP45_03950 PF18125 RlmM ferredoxin-like domain TP45_03975 PF00892 EamA-like transporter family TP45_03985 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain TP45_03985 PF00749 tRNA synthetases class I (E and Q), catalytic domain TP45_04000 PF00072 Response regulator receiver domain TP45_04000 PF00990 Diguanylate cyclase, GGDEF domain TP45_04005 PF00072 Response regulator receiver domain TP45_04005 PF01627 Hpt domain TP45_04005 PF17149 Periplasmic sensor domain found in signal transduction proteins TP45_04005 PF00672 HAMP domain TP45_04005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_04005 PF00512 His Kinase A (phospho-acceptor) domain TP45_04010 PF00072 Response regulator receiver domain TP45_04010 PF00196 Bacterial regulatory proteins, luxR family TP45_04020 PF01625 Peptide methionine sulfoxide reductase TP45_04030 PF00923 Transaldolase/Fructose-6-phosphate aldolase TP45_04035 PF01272 Transcription elongation factor, GreA/GreB, C-term TP45_04035 PF14760 Rnk N-terminus TP45_04040 PF03466 LysR substrate binding domain TP45_04040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_04045 PF13192 Thioredoxin domain TP45_04045 PF07992 Pyridine nucleotide-disulphide oxidoreductase TP45_04050 PF00578 AhpC/TSA family TP45_04050 PF10417 C-terminal domain of 1-Cys peroxiredoxin TP45_04055 PF17827 PrmC N-terminal domain TP45_04055 PF05175 Methyltransferase small domain TP45_04060 PF00561 alpha/beta hydrolase fold TP45_04070 PF00293 NUDIX domain TP45_04075 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TP45_04075 PF00476 DNA polymerase family A TP45_04075 PF01612 3'-5' exonuclease TP45_04075 PF01367 5'-3' exonuclease, C-terminal SAM fold TP45_04105 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch TP45_04105 PF05222 Alanine dehydrogenase/PNT, N-terminal domain TP45_04105 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TP45_04125 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch TP45_04130 PF02233 NAD(P) transhydrogenase beta subunit TP45_04145 PF01063 Amino-transferase class IV TP45_04150 PF04151 Bacterial pre-peptidase C-terminal domain TP45_04150 PF00082 Subtilase family TP45_04155 PF04151 Bacterial pre-peptidase C-terminal domain TP45_04155 PF00082 Subtilase family TP45_04160 PF04151 Bacterial pre-peptidase C-terminal domain TP45_04160 PF00082 Subtilase family TP45_04165 PF04073 Aminoacyl-tRNA editing domain TP45_04180 PF17189 Glycosyl hydrolase family 30 beta sandwich domain TP45_04180 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain TP45_04190 PF03358 NADPH-dependent FMN reductase TP45_04195 PF03631 Virulence factor BrkB TP45_04200 PF08534 Redoxin TP45_04205 PF00708 Acylphosphatase TP45_04215 PF03976 Polyphosphate kinase 2 (PPK2) TP45_04220 PF00994 Probable molybdopterin binding domain TP45_04230 PF00472 RF-1 domain TP45_04230 PF03462 PCRF domain TP45_04235 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain TP45_04235 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain TP45_04235 PF01488 Shikimate / quinate 5-dehydrogenase TP45_04245 PF03550 Outer membrane lipoprotein LolB TP45_04250 PF08544 GHMP kinases C terminal TP45_04250 PF00288 GHMP kinases N terminal domain TP45_04260 PF14572 Phosphoribosyl synthetase-associated domain TP45_04260 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TP45_04265 PF01386 Ribosomal L25p family TP45_04265 PF14693 Ribosomal protein TL5, C-terminal domain TP45_04270 PF01195 Peptidyl-tRNA hydrolase TP45_04275 PF06071 Protein of unknown function (DUF933) TP45_04275 PF01926 50S ribosome-binding GTPase TP45_04295 PF00009 Elongation factor Tu GTP binding domain TP45_04295 PF03144 Elongation factor Tu domain 2 TP45_04295 PF03143 Elongation factor Tu C-terminal domain TP45_04305 PF00584 SecE/Sec61-gamma subunits of protein translocation complex TP45_04310 PF02357 Transcription termination factor nusG TP45_04310 PF00467 KOW motif TP45_04315 PF03946 Ribosomal protein L11, N-terminal domain TP45_04315 PF00298 Ribosomal protein L11, RNA binding domain TP45_04320 PF00687 Ribosomal protein L1p/L10e family TP45_04325 PF00466 Ribosomal protein L10 TP45_04330 PF00542 Ribosomal protein L7/L12 C-terminal domain TP45_04330 PF16320 Ribosomal protein L7/L12 dimerisation domain TP45_04335 PF00562 RNA polymerase Rpb2, domain 6 TP45_04335 PF04561 RNA polymerase Rpb2, domain 2 TP45_04335 PF04563 RNA polymerase beta subunit TP45_04335 PF04565 RNA polymerase Rpb2, domain 3 TP45_04335 PF04560 RNA polymerase Rpb2, domain 7 TP45_04335 PF10385 RNA polymerase beta subunit external 1 domain TP45_04340 PF04997 RNA polymerase Rpb1, domain 1 TP45_04340 PF04998 RNA polymerase Rpb1, domain 5 TP45_04340 PF05000 RNA polymerase Rpb1, domain 4 TP45_04340 PF04983 RNA polymerase Rpb1, domain 3 TP45_04340 PF00623 RNA polymerase Rpb1, domain 2 TP45_04345 PF00164 Ribosomal protein S12/S23 TP45_04350 PF00177 Ribosomal protein S7p/S5e TP45_04355 PF00009 Elongation factor Tu GTP binding domain TP45_04355 PF03144 Elongation factor Tu domain 2 TP45_04355 PF03764 Elongation factor G, domain IV TP45_04355 PF14492 Elongation Factor G, domain II TP45_04355 PF00679 Elongation factor G C-terminus TP45_04360 PF03143 Elongation factor Tu C-terminal domain TP45_04360 PF03144 Elongation factor Tu domain 2 TP45_04360 PF00009 Elongation factor Tu GTP binding domain TP45_04365 PF00338 Ribosomal protein S10p/S20e TP45_04370 PF00297 Ribosomal protein L3 TP45_04375 PF00573 Ribosomal protein L4/L1 family TP45_04380 PF00276 Ribosomal protein L23 TP45_04385 PF03947 Ribosomal Proteins L2, C-terminal domain TP45_04385 PF00181 Ribosomal Proteins L2, RNA binding domain TP45_04390 PF00203 Ribosomal protein S19 TP45_04395 PF00237 Ribosomal protein L22p/L17e TP45_04400 PF00189 Ribosomal protein S3, C-terminal domain TP45_04400 PF07650 KH domain TP45_04405 PF00252 Ribosomal protein L16p/L10e TP45_04410 PF00831 Ribosomal L29 protein TP45_04415 PF00366 Ribosomal protein S17 TP45_04420 PF00238 Ribosomal protein L14p/L23e TP45_04425 PF00467 KOW motif TP45_04425 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TP45_04430 PF00673 ribosomal L5P family C-terminus TP45_04430 PF00281 Ribosomal protein L5 TP45_04435 PF00253 Ribosomal protein S14p/S29e TP45_04440 PF00410 Ribosomal protein S8 TP45_04445 PF00347 Ribosomal protein L6 TP45_04450 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TP45_04455 PF03719 Ribosomal protein S5, C-terminal domain TP45_04455 PF00333 Ribosomal protein S5, N-terminal domain TP45_04460 PF00327 Ribosomal protein L30p/L7e TP45_04465 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TP45_04470 PF00344 SecY translocase TP45_04475 PF00416 Ribosomal protein S13/S18 TP45_04480 PF00411 Ribosomal protein S11 TP45_04485 PF00163 Ribosomal protein S4/S9 N-terminal domain TP45_04485 PF01479 S4 domain TP45_04490 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TP45_04490 PF01000 RNA polymerase Rpb3/RpoA insert domain TP45_04490 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TP45_04495 PF01196 Ribosomal protein L17 TP45_04500 PF02600 Disulfide bond formation protein DsbB TP45_04515 PF01474 Class-II DAHP synthetase family TP45_04525 PF01425 Amidase TP45_04540 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TP45_04545 PF00056 lactate/malate dehydrogenase, NAD binding domain TP45_04545 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TP45_04550 PF02798 Glutathione S-transferase, N-terminal domain TP45_04550 PF00043 Glutathione S-transferase, C-terminal domain TP45_04560 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TP45_04560 PF07992 Pyridine nucleotide-disulphide oxidoreductase TP45_04565 PF08240 Alcohol dehydrogenase GroES-like domain TP45_04565 PF00107 Zinc-binding dehydrogenase TP45_04570 PF05736 OprF membrane domain TP45_04570 PF00691 OmpA family TP45_04580 PF00849 RNA pseudouridylate synthase TP45_04590 PF00155 Aminotransferase class I and II TP45_04600 PF00528 Binding-protein-dependent transport system inner membrane component TP45_04605 PF00528 Binding-protein-dependent transport system inner membrane component TP45_04610 PF17850 CysA C-terminal regulatory domain TP45_04610 PF12857 TOBE-like domain TP45_04610 PF00005 ABC transporter TP45_04620 PF08240 Alcohol dehydrogenase GroES-like domain TP45_04620 PF00107 Zinc-binding dehydrogenase TP45_04630 PF04185 Phosphoesterase family TP45_04630 PF05506 Domain of unknown function (DUF756) TP45_04635 PF10459 Peptidase S46 TP45_04640 PF00300 Histidine phosphatase superfamily (branch 1) TP45_04645 PF02875 Mur ligase family, glutamate ligase domain TP45_04645 PF08245 Mur ligase middle domain TP45_04660 PF00156 Phosphoribosyl transferase domain TP45_04665 PF04305 Protein of unknown function (DUF455) TP45_04680 PF00149 Calcineurin-like phosphoesterase TP45_04685 PF01569 PAP2 superfamily TP45_04690 PF13439 Glycosyltransferase Family 4 TP45_04690 PF00534 Glycosyl transferases group 1 TP45_04695 PF02541 Ppx/GppA phosphatase family TP45_04700 PF13090 Polyphosphate kinase C-terminal domain 2 TP45_04700 PF17941 Polyphosphate kinase C-terminal domain 1 TP45_04700 PF02503 Polyphosphate kinase middle domain TP45_04700 PF13089 Polyphosphate kinase N-terminal domain TP45_04705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_04705 PF00989 PAS fold TP45_04705 PF00512 His Kinase A (phospho-acceptor) domain TP45_04705 PF11808 Phosphate regulon sensor protein PhoR TP45_04710 PF00486 Transcriptional regulatory protein, C terminal TP45_04710 PF00072 Response regulator receiver domain TP45_04715 PF01435 Peptidase family M48 TP45_04715 PF13181 Tetratricopeptide repeat TP45_04720 PF00462 Glutaredoxin TP45_04730 PF00180 Isocitrate/isopropylmalate dehydrogenase TP45_04770 PF05698 Bacterial trigger factor protein (TF) C-terminus TP45_04770 PF05697 Bacterial trigger factor protein (TF) TP45_04775 PF00574 Clp protease TP45_04780 PF06689 ClpX C4-type zinc finger TP45_04780 PF07724 AAA domain (Cdc48 subfamily) TP45_04780 PF10431 C-terminal, D2-small domain, of ClpB protein TP45_04785 PF00004 ATPase family associated with various cellular activities (AAA) TP45_04785 PF02190 ATP-dependent protease La (LON) substrate-binding domain TP45_04785 PF05362 Lon protease (S16) C-terminal proteolytic domain TP45_04790 PF00216 Bacterial DNA-binding protein TP45_04820 PF16123 Hydroxyacylglutathione hydrolase C-terminus TP45_04820 PF00753 Metallo-beta-lactamase superfamily TP45_04830 PF00075 RNase H TP45_04835 PF00929 Exonuclease TP45_04855 PF01075 Glycosyltransferase family 9 (heptosyltransferase) TP45_04865 PF12706 Beta-lactamase superfamily domain TP45_04865 PF00753 Metallo-beta-lactamase superfamily TP45_04870 PF06463 Molybdenum Cofactor Synthesis C TP45_04870 PF04055 Radical SAM superfamily TP45_04880 PF01967 MoaC family TP45_04885 PF02597 ThiS family TP45_04890 PF02391 MoaE protein TP45_04900 PF12170 DNA polymerase III tau subunit V interacting with alpha TP45_04900 PF12169 DNA polymerase III subunits gamma and tau domain III TP45_04900 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding TP45_04905 PF02575 YbaB/EbfC DNA-binding family TP45_04910 PF13662 Toprim domain TP45_04910 PF02132 RecR protein TP45_04915 PF01230 HIT domain TP45_04925 PF11992 Domain of unknown function (DUF3488) TP45_04925 PF01841 Transglutaminase-like superfamily TP45_04925 PF13559 Domain of unknown function (DUF4129) TP45_04935 PF17863 AAA lid domain TP45_04935 PF07726 ATPase family associated with various cellular activities (AAA) TP45_04955 PF02545 Maf-like protein TP45_04960 PF02620 Large ribosomal RNA subunit accumulation protein YceD TP45_04965 PF01783 Ribosomal L32p protein family TP45_04970 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TP45_04970 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TP45_04980 PF00698 Acyl transferase domain TP45_04990 PF00550 Phosphopantetheine attachment site TP45_04995 PF00109 Beta-ketoacyl synthase, N-terminal domain TP45_04995 PF02801 Beta-ketoacyl synthase, C-terminal domain TP45_05000 PF04715 Anthranilate synthase component I, N terminal region TP45_05000 PF00425 chorismate binding enzyme TP45_05005 PF02618 YceG-like family TP45_05010 PF09115 DNA polymerase III, delta subunit, C terminal TP45_05030 PF00158 Sigma-54 interaction domain TP45_05030 PF06506 Propionate catabolism activator TP45_05030 PF02954 Bacterial regulatory protein, Fis family TP45_05040 PF00285 Citrate synthase, C-terminal domain TP45_05045 PF00694 Aconitase C-terminal domain TP45_05045 PF00330 Aconitase family (aconitate hydratase) TP45_05055 PF04303 PrpF protein TP45_05060 PF00593 TonB dependent receptor TP45_05060 PF07715 TonB-dependent Receptor Plug Domain TP45_05070 PF17962 Bacterial macroglobulin domain 6 TP45_05070 PF01835 MG2 domain TP45_05070 PF00207 Alpha-2-macroglobulin family TP45_05070 PF07703 Alpha-2-macroglobulin bait region domain TP45_05070 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain TP45_05070 PF11974 Bacterial alpha-2-macroglobulin MG3 domain TP45_05070 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain TP45_05070 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain TP45_05085 PF06832 Penicillin-Binding Protein C-terminus Family TP45_05085 PF00912 Transglycosylase TP45_05085 PF00905 Penicillin binding protein transpeptidase domain TP45_05095 PF08534 Redoxin TP45_05105 PF01556 DnaJ C terminal domain TP45_05105 PF00226 DnaJ domain TP45_05110 PF00072 Response regulator receiver domain TP45_05115 PF01145 SPFH domain / Band 7 family TP45_05115 PF12221 Bacterial membrane protein N terminal TP45_05120 PF01145 SPFH domain / Band 7 family TP45_05130 PF00709 Adenylosuccinate synthetase TP45_05135 PF11838 ERAP1-like C-terminal domain TP45_05135 PF01433 Peptidase family M1 domain TP45_05150 PF00440 Bacterial regulatory proteins, tetR family TP45_05165 PF01527 Transposase TP45_05170 PF13333 Integrase core domain TP45_05170 PF00665 Integrase core domain TP45_05170 PF13276 HTH-like domain TP45_05205 PF02384 N-6 DNA Methylase TP45_05210 PF08780 Nucleotidyltransferase substrate binding protein like TP45_05215 PF01420 Type I restriction modification DNA specificity domain TP45_05220 PF11867 Domain of unknown function (DUF3387) TP45_05220 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TP45_05220 PF18766 SWI2/SNF2 ATPase TP45_05245 PF00300 Histidine phosphatase superfamily (branch 1) TP45_05245 PF13456 Reverse transcriptase-like TP45_05250 PF01256 Carbohydrate kinase TP45_05265 PF00723 Glycosyl hydrolases family 15 TP45_05275 PF17678 Glycosyl hydrolase family 92 N-terminal domain TP45_05275 PF07971 Glycosyl hydrolase family 92 TP45_05280 PF00106 short chain dehydrogenase TP45_05295 PF07992 Pyridine nucleotide-disulphide oxidoreductase TP45_05315 PF17755 UvrA DNA-binding domain TP45_05320 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain TP45_05320 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TP45_05325 PF03450 CO dehydrogenase flavoprotein C-terminal domain TP45_05325 PF00941 FAD binding domain in molybdopterin dehydrogenase TP45_05330 PF00111 2Fe-2S iron-sulfur cluster binding domain TP45_05330 PF01799 [2Fe-2S] binding domain TP45_05365 PF00717 Peptidase S24-like TP45_05365 PF01726 LexA DNA binding domain TP45_05385 PF14579 Helix-hairpin-helix motif TP45_05385 PF02811 PHP domain TP45_05385 PF07733 Bacterial DNA polymerase III alpha NTPase domain TP45_05385 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TP45_05400 PF03169 OPT oligopeptide transporter protein TP45_05415 PF00326 Prolyl oligopeptidase family TP45_05415 PF07676 WD40-like Beta Propeller Repeat TP45_05415 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region TP45_05435 PF12833 Helix-turn-helix domain TP45_05435 PF02311 AraC-like ligand binding domain TP45_05450 PF06628 Catalase-related immune-responsive TP45_05450 PF18011 C-terminal domain found in long catalases TP45_05450 PF00199 Catalase TP45_05455 PF00248 Aldo/keto reductase family TP45_05460 PF00135 Carboxylesterase family TP45_05465 PF02347 Glycine cleavage system P-protein TP45_05470 PF07690 Major Facilitator Superfamily TP45_05485 PF08019 Phosphoethanolamine transferase EptA/EptB TP45_05485 PF00884 Sulfatase TP45_05500 PF00072 Response regulator receiver domain TP45_05500 PF00486 Transcriptional regulatory protein, C terminal TP45_05505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_05505 PF08521 Two-component sensor kinase N-terminal TP45_05505 PF00512 His Kinase A (phospho-acceptor) domain TP45_05515 PF03776 Septum formation topological specificity factor MinE TP45_05520 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TP45_05525 PF03775 Septum formation inhibitor MinC, C-terminal domain TP45_05525 PF05209 Septum formation inhibitor MinC, N-terminal domain TP45_05535 PF07730 Histidine kinase TP45_05540 PF00072 Response regulator receiver domain TP45_05540 PF00196 Bacterial regulatory proteins, luxR family TP45_05555 PF00730 HhH-GPD superfamily base excision DNA repair protein TP45_05580 PF02222 ATP-grasp domain TP45_05590 PF04377 Arginine-tRNA-protein transferase, C terminus TP45_05590 PF04376 Arginine-tRNA-protein transferase, N terminus TP45_05615 PF00378 Enoyl-CoA hydratase/isomerase TP45_05630 PF17755 UvrA DNA-binding domain TP45_05630 PF00005 ABC transporter TP45_05630 PF17760 UvrA interaction domain TP45_05635 PF00829 Ribosomal prokaryotic L21 protein TP45_05640 PF01016 Ribosomal L27 protein TP45_05645 PF01926 50S ribosome-binding GTPase TP45_05645 PF01018 GTP1/OBG TP45_05650 PF01649 Ribosomal protein S20 TP45_05655 PF03023 Lipid II flippase MurJ TP45_05660 PF06574 FAD synthetase TP45_05660 PF01687 Riboflavin kinase TP45_05665 PF08264 Anticodon-binding domain of tRNA TP45_05665 PF00133 tRNA synthetases class I (I, L, M and V) TP45_05665 PF06827 Zinc finger found in FPG and IleRS TP45_05670 PF01252 Signal peptidase (SPase) II TP45_05675 PF02401 LytB protein TP45_05705 PF06481 COX Aromatic Rich Motif TP45_05705 PF00116 Cytochrome C oxidase subunit II, periplasmic domain TP45_05710 PF00115 Cytochrome C and Quinol oxidase polypeptide I TP45_05715 PF00510 Cytochrome c oxidase subunit III TP45_05720 PF03626 Prokaryotic Cytochrome C oxidase subunit IV TP45_05730 PF18073 Rubredoxin metal binding domain TP45_05735 PF05656 Protein of unknown function (DUF805) TP45_05745 PF12833 Helix-turn-helix domain TP45_05750 PF00183 Hsp90 protein TP45_05750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_05760 PF08678 Rsbr N terminal TP45_05760 PF01740 STAS domain TP45_05765 PF01740 STAS domain TP45_05770 PF13581 Histidine kinase-like ATPase domain TP45_05780 PF17149 Periplasmic sensor domain found in signal transduction proteins TP45_05780 PF00672 HAMP domain TP45_05780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_05780 PF00512 His Kinase A (phospho-acceptor) domain TP45_05780 PF01627 Hpt domain TP45_05780 PF00072 Response regulator receiver domain TP45_05785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_05785 PF00512 His Kinase A (phospho-acceptor) domain TP45_05785 PF00072 Response regulator receiver domain TP45_05785 PF13188 PAS domain TP45_05785 PF08448 PAS fold TP45_05790 PF04616 Glycosyl hydrolases family 43 TP45_05790 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain TP45_05795 PF00593 TonB dependent receptor TP45_05795 PF07715 TonB-dependent Receptor Plug Domain TP45_05800 PF00085 Thioredoxin TP45_05805 PF07237 Protein of unknown function (DUF1428) TP45_05815 PF02702 Osmosensitive K+ channel His kinase sensor domain TP45_05815 PF13493 Domain of unknown function (DUF4118) TP45_05815 PF00512 His Kinase A (phospho-acceptor) domain TP45_05815 PF13492 GAF domain TP45_05815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_05820 PF01339 CheB methylesterase TP45_05825 PF01739 CheR methyltransferase, SAM binding domain TP45_05825 PF03705 CheR methyltransferase, all-alpha domain TP45_05830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_05830 PF00672 HAMP domain TP45_05830 PF01627 Hpt domain TP45_05830 PF00512 His Kinase A (phospho-acceptor) domain TP45_05830 PF00072 Response regulator receiver domain TP45_05830 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TP45_05835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_05835 PF13426 PAS domain TP45_05835 PF00072 Response regulator receiver domain TP45_05840 PF00072 Response regulator receiver domain TP45_05850 PF06964 Alpha-L-arabinofuranosidase C-terminal domain TP45_05860 PF01263 Aldose 1-epimerase TP45_05865 PF01578 Cytochrome C assembly protein TP45_05870 PF00448 SRP54-type protein, GTPase domain TP45_05870 PF02881 SRP54-type protein, helical bundle domain TP45_05870 PF02978 Signal peptide binding domain TP45_05880 PF03060 Nitronate monooxygenase TP45_05885 PF01063 Amino-transferase class IV TP45_05890 PF00886 Ribosomal protein S16 TP45_05895 PF01782 RimM N-terminal domain TP45_05895 PF05239 PRC-barrel domain TP45_05900 PF01746 tRNA (Guanine-1)-methyltransferase TP45_05905 PF01245 Ribosomal protein L19 TP45_05910 PF01554 MatE TP45_05930 PF01479 S4 domain TP45_05935 PF00141 Peroxidase TP45_05945 PF00488 MutS domain V TP45_05945 PF05192 MutS domain III TP45_05945 PF05190 MutS family domain IV TP45_05945 PF01624 MutS domain I TP45_05945 PF05188 MutS domain II TP45_05955 PF03301 Tryptophan 2,3-dioxygenase TP45_05995 PF02836 Glycosyl hydrolases family 2, TIM barrel domain TP45_05995 PF16355 Domain of unknown function (DUF4982) TP45_05995 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 TP45_05995 PF00703 Glycosyl hydrolases family 2 TP45_05995 PF02837 Glycosyl hydrolases family 2, sugar binding domain TP45_06000 PF07745 Glycosyl hydrolase family 53 TP45_06010 PF01381 Helix-turn-helix TP45_06010 PF09856 Predicted transcriptional regulator (DUF2083) TP45_06010 PF06114 IrrE N-terminal-like domain TP45_06015 PF00171 Aldehyde dehydrogenase family TP45_06020 PF02770 Acyl-CoA dehydrogenase, middle domain TP45_06020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TP45_06020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TP45_06025 PF00378 Enoyl-CoA hydratase/isomerase TP45_06030 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TP45_06030 PF00378 Enoyl-CoA hydratase/isomerase TP45_06030 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TP45_06035 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TP45_06035 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TP45_06040 PF01545 Cation efflux family TP45_06045 PF13276 HTH-like domain TP45_06045 PF13683 Integrase core domain TP45_06050 PF01527 Transposase TP45_06055 PF05598 Transposase domain (DUF772) TP45_06055 PF01609 Transposase DDE domain TP45_06060 PF01609 Transposase DDE domain TP45_06060 PF05598 Transposase domain (DUF772) TP45_06070 PF01527 Transposase TP45_06095 PF03033 Glycosyltransferase family 28 N-terminal domain TP45_06100 PF01757 Acyltransferase family TP45_06105 PF00106 short chain dehydrogenase TP45_06120 PF00750 tRNA synthetases class I (R) TP45_06120 PF05746 DALR anticodon binding domain TP45_06120 PF03485 Arginyl tRNA synthetase N terminal domain TP45_06125 PF04002 RadC-like JAB domain TP45_06130 PF02441 Flavoprotein TP45_06130 PF04127 DNA / pantothenate metabolism flavoprotein TP45_06135 PF00692 dUTPase TP45_06140 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TP45_06140 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TP45_06140 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TP45_06140 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TP45_06155 PF00535 Glycosyl transferase family 2 TP45_06160 PF01370 NAD dependent epimerase/dehydratase family TP45_06175 PF02195 ParB-like nuclease domain TP45_06175 PF17762 HTH domain found in ParB protein TP45_06180 PF13614 AAA domain TP45_06190 PF00156 Phosphoribosyl transferase domain TP45_06195 PF03372 Endonuclease/Exonuclease/phosphatase family TP45_06200 PF07690 Major Facilitator Superfamily TP45_06210 PF03702 Anhydro-N-acetylmuramic acid kinase TP45_06215 PF01551 Peptidase family M23 TP45_06215 PF04225 Opacity-associated protein A LysM-like domain TP45_06220 PF00579 tRNA synthetases class I (W and Y) TP45_06250 PF00171 Aldehyde dehydrogenase family TP45_06250 PF01619 Proline dehydrogenase TP45_06250 PF14850 DNA-binding domain of Proline dehydrogenase TP45_06250 PF18327 Proline utilization A proline dehydrogenase N-terminal domain TP45_06260 PF02790 Cytochrome C oxidase subunit II, transmembrane domain TP45_06260 PF00116 Cytochrome C oxidase subunit II, periplasmic domain TP45_06265 PF00115 Cytochrome C and Quinol oxidase polypeptide I TP45_06275 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 TP45_06280 PF00510 Cytochrome c oxidase subunit III TP45_06305 PF01040 UbiA prenyltransferase family TP45_06315 PF13593 SBF-like CPA transporter family (DUF4137) TP45_06320 PF10410 DnaB-helicase binding domain of primase TP45_06320 PF08278 DNA primase DnaG DnaB-binding TP45_06320 PF08275 DNA primase catalytic core, N-terminal domain TP45_06320 PF01807 CHC2 zinc finger TP45_06325 PF03631 Virulence factor BrkB TP45_06330 PF09424 Yqey-like protein TP45_06335 PF01165 Ribosomal protein S21 TP45_06340 PF00814 Glycoprotease family TP45_06345 PF02152 Dihydroneopterin aldolase TP45_06350 PF01915 Glycosyl hydrolase family 3 C-terminal domain TP45_06350 PF14310 Fibronectin type III-like domain TP45_06350 PF00933 Glycosyl hydrolase family 3 N terminal domain TP45_06355 PF07995 Glucose / Sorbosone dehydrogenase TP45_06360 PF05360 yiaA/B two helix domain TP45_06375 PF13520 Amino acid permease TP45_06385 PF13378 Enolase C-terminal domain-like TP45_06385 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TP45_06395 PF01510 N-acetylmuramoyl-L-alanine amidase TP45_06400 PF01427 D-ala-D-ala dipeptidase TP45_06450 PF07063 Domain of unknown function (DUF1338) TP45_06465 PF00873 AcrB/AcrD/AcrF family TP45_06470 PF00873 AcrB/AcrD/AcrF family TP45_06475 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TP45_06480 PF01546 Peptidase family M20/M25/M40 TP45_06480 PF07687 Peptidase dimerisation domain TP45_06485 PF14489 QueF-like protein TP45_06485 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term TP45_06500 PF03971 Monomeric isocitrate dehydrogenase TP45_06510 PF03466 LysR substrate binding domain TP45_06510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_06515 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) TP45_06520 PF07497 Rho termination factor, RNA-binding domain TP45_06520 PF07498 Rho termination factor, N-terminal domain TP45_06520 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TP45_06525 PF00085 Thioredoxin TP45_06530 PF00270 DEAD/DEAH box helicase TP45_06530 PF00271 Helicase conserved C-terminal domain TP45_06530 PF12300 ATP-dependent RNA helicase RhlB TP45_06535 PF00005 ABC transporter TP45_06540 PF18075 FtsX extracellular domain TP45_06545 PF01339 CheB methylesterase TP45_06545 PF00072 Response regulator receiver domain TP45_06550 PF03167 Uracil DNA glycosylase superfamily TP45_06555 PF04542 Sigma-70 region 2 TP45_06555 PF04545 Sigma-70, region 4 TP45_06560 PF03458 UPF0126 domain TP45_06565 PF07992 Pyridine nucleotide-disulphide oxidoreductase TP45_06580 PF13417 Glutathione S-transferase, N-terminal domain TP45_06580 PF00043 Glutathione S-transferase, C-terminal domain TP45_06585 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TP45_06585 PF17764 3′ DNA-binding domain (3′BD) TP45_06585 PF00271 Helicase conserved C-terminal domain TP45_06585 PF18074 Primosomal protein N C-terminal domain TP45_06585 PF00270 DEAD/DEAH box helicase TP45_06605 PF01554 MatE TP45_06610 PF01343 Peptidase family S49 TP45_06640 PF01300 Telomere recombination TP45_06645 PF01751 Toprim domain TP45_06645 PF13368 Topoisomerase C-terminal repeat TP45_06645 PF01131 DNA topoisomerase TP45_06655 PF07963 Prokaryotic N-terminal methylation motif TP45_06655 PF00114 Pilin (bacterial filament) TP45_06660 PF04361 Protein of unknown function (DUF494) TP45_06665 PF17782 DprA winged helix domain TP45_06665 PF02481 DNA recombination-mediator protein A TP45_06670 PF01476 LysM domain TP45_06675 PF01327 Polypeptide deformylase TP45_06680 PF02911 Formyl transferase, C-terminal domain TP45_06680 PF00551 Formyl transferase TP45_06685 PF01189 16S rRNA methyltransferase RsmB/F TP45_06685 PF01029 NusB family TP45_06700 PF00535 Glycosyl transferase family 2 TP45_06720 PF00925 GTP cyclohydrolase II TP45_06735 PF03279 Bacterial lipid A biosynthesis acyltransferase TP45_06740 PF02580 D-Tyr-tRNA(Tyr) deacylase TP45_06745 PF04546 Sigma-70, non-essential region TP45_06745 PF03979 Sigma-70 factor, region 1.1 TP45_06745 PF00140 Sigma-70 factor, region 1.2 TP45_06745 PF04542 Sigma-70 region 2 TP45_06745 PF04539 Sigma-70 region 3 TP45_06745 PF04545 Sigma-70, region 4 TP45_06760 PF00589 Phage integrase family TP45_06775 PF13276 HTH-like domain TP45_06775 PF00665 Integrase core domain TP45_06775 PF13333 Integrase core domain TP45_06780 PF01527 Transposase TP45_06790 PF02384 N-6 DNA Methylase TP45_06810 PF01527 Transposase TP45_06895 PF01527 Transposase TP45_06900 PF13276 HTH-like domain TP45_06900 PF13333 Integrase core domain TP45_06900 PF00665 Integrase core domain TP45_06980 PF05598 Transposase domain (DUF772) TP45_06980 PF01609 Transposase DDE domain TP45_06985 PF01527 Transposase TP45_06990 PF13276 HTH-like domain TP45_06990 PF00665 Integrase core domain TP45_06990 PF13333 Integrase core domain TP45_06995 PF02203 Tar ligand binding domain homologue TP45_06995 PF00672 HAMP domain TP45_06995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_07010 PF01042 Endoribonuclease L-PSP TP45_07015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_07015 PF03466 LysR substrate binding domain TP45_07025 PF00005 ABC transporter TP45_07040 PF00593 TonB dependent receptor TP45_07040 PF07715 TonB-dependent Receptor Plug Domain TP45_07085 PF08240 Alcohol dehydrogenase GroES-like domain TP45_07085 PF13823 Alcohol dehydrogenase GroES-associated TP45_07085 PF00107 Zinc-binding dehydrogenase TP45_07100 PF00664 ABC transporter transmembrane region TP45_07100 PF00005 ABC transporter TP45_07110 PF03275 UDP-galactopyranose mutase TP45_07120 PF16363 GDP-mannose 4,6 dehydratase TP45_07140 PF02322 Cytochrome bd terminal oxidase subunit II TP45_07145 PF01654 Cytochrome bd terminal oxidase subunit I TP45_07155 PF00158 Sigma-54 interaction domain TP45_07155 PF00072 Response regulator receiver domain TP45_07155 PF02954 Bacterial regulatory protein, Fis family TP45_07170 PF01339 CheB methylesterase TP45_07170 PF03705 CheR methyltransferase, all-alpha domain TP45_07170 PF01739 CheR methyltransferase, SAM binding domain TP45_07170 PF08448 PAS fold TP45_07190 PF05067 Manganese containing catalase TP45_07195 PF05974 Domain of unknown function (DUF892) TP45_07210 PF02743 Cache domain TP45_07210 PF00672 HAMP domain TP45_07210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_07210 PF06580 Histidine kinase TP45_07215 PF04397 LytTr DNA-binding domain TP45_07215 PF00072 Response regulator receiver domain TP45_07225 PF13520 Amino acid permease TP45_07240 PF05649 Peptidase family M13 TP45_07240 PF01431 Peptidase family M13 TP45_07250 PF00248 Aldo/keto reductase family TP45_07255 PF03358 NADPH-dependent FMN reductase TP45_07260 PF03466 LysR substrate binding domain TP45_07260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_07270 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase TP45_07280 PF03167 Uracil DNA glycosylase superfamily TP45_07285 PF02469 Fasciclin domain TP45_07290 PF00999 Sodium/hydrogen exchanger family TP45_07295 PF00005 ABC transporter TP45_07300 PF01061 ABC-2 type transporter TP45_07325 PF13677 Membrane MotB of proton-channel complex MotA/MotB TP45_07325 PF00691 OmpA family TP45_07330 PF01618 MotA/TolQ/ExbB proton channel family TP45_07340 PF01641 SelR domain TP45_07350 PF01037 Lrp/AsnC ligand binding domain TP45_07355 PF01266 FAD dependent oxidoreductase TP45_07360 PF00842 Alanine racemase, C-terminal domain TP45_07360 PF01168 Alanine racemase, N-terminal domain TP45_07380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_07380 PF00512 His Kinase A (phospho-acceptor) domain TP45_07380 PF00989 PAS fold TP45_07390 PF07995 Glucose / Sorbosone dehydrogenase TP45_07400 PF08468 Methyltransferase small domain N-terminal TP45_07400 PF05175 Methyltransferase small domain TP45_07405 PF00849 RNA pseudouridylate synthase TP45_07405 PF01479 S4 domain TP45_07410 PF13419 Haloacid dehalogenase-like hydrolase TP45_07435 PF00512 His Kinase A (phospho-acceptor) domain TP45_07435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_07435 PF00989 PAS fold TP45_07435 PF01627 Hpt domain TP45_07435 PF00072 Response regulator receiver domain TP45_07435 PF18415 Histidine kinase receptor ArcB trans-membrane domain TP45_07445 PF04461 Protein of unknown function (DUF520) TP45_07450 PF00892 EamA-like transporter family TP45_07455 PF00005 ABC transporter TP45_07455 PF09383 NIL domain TP45_07460 PF00528 Binding-protein-dependent transport system inner membrane component TP45_07465 PF03180 NLPA lipoprotein TP45_07485 PF01609 Transposase DDE domain TP45_07485 PF05598 Transposase domain (DUF772) TP45_07505 PF00364 Biotin-requiring enzyme TP45_07505 PF02817 e3 binding domain TP45_07505 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TP45_07515 PF07992 Pyridine nucleotide-disulphide oxidoreductase TP45_07515 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TP45_07535 PF00119 ATP synthase A chain TP45_07540 PF00137 ATP synthase subunit C TP45_07545 PF00430 ATP synthase B/B' CF(0) TP45_07550 PF00213 ATP synthase delta (OSCP) subunit TP45_07555 PF00306 ATP synthase alpha/beta chain, C terminal domain TP45_07555 PF02874 ATP synthase alpha/beta family, beta-barrel domain TP45_07555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TP45_07560 PF00231 ATP synthase TP45_07565 PF02874 ATP synthase alpha/beta family, beta-barrel domain TP45_07565 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TP45_07570 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain TP45_07570 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain TP45_07590 PF14602 Hexapeptide repeat of succinyl-transferase TP45_07590 PF12804 MobA-like NTP transferase domain TP45_07590 PF00132 Bacterial transferase hexapeptide (six repeats) TP45_07595 PF00512 His Kinase A (phospho-acceptor) domain TP45_07595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_07600 PF00158 Sigma-54 interaction domain TP45_07600 PF00072 Response regulator receiver domain TP45_07600 PF02954 Bacterial regulatory protein, Fis family TP45_07610 PF00005 ABC transporter TP45_07610 PF02687 FtsX-like permease family TP45_07610 PF12704 MacB-like periplasmic core domain TP45_07615 PF02687 FtsX-like permease family TP45_07615 PF12704 MacB-like periplasmic core domain TP45_07620 PF01609 Transposase DDE domain TP45_07620 PF05598 Transposase domain (DUF772) TP45_07625 PF00005 ABC transporter TP45_07630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TP45_07635 PF01380 SIS domain TP45_07660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TP45_07665 PF05275 Copper resistance protein B precursor (CopB) TP45_07670 PF07732 Multicopper oxidase TP45_07670 PF00394 Multicopper oxidase TP45_07670 PF07731 Multicopper oxidase TP45_07685 PF01432 Peptidase family M3 TP45_07700 PF07977 FabA-like domain TP45_07705 PF00817 impB/mucB/samB family TP45_07705 PF11799 impB/mucB/samB family C-terminal domain TP45_07710 PF13419 Haloacid dehalogenase-like hydrolase TP45_07715 PF07715 TonB-dependent Receptor Plug Domain TP45_07715 PF00593 TonB dependent receptor TP45_07720 PF00756 Putative esterase TP45_07730 PF13185 GAF domain TP45_07765 PF01242 6-pyruvoyl tetrahydropterin synthase TP45_07770 PF00593 TonB dependent receptor TP45_07770 PF07715 TonB-dependent Receptor Plug Domain TP45_07780 PF00270 DEAD/DEAH box helicase TP45_07780 PF00271 Helicase conserved C-terminal domain TP45_07790 PF02798 Glutathione S-transferase, N-terminal domain TP45_07790 PF14497 Glutathione S-transferase, C-terminal domain TP45_07795 PF00437 Type II/IV secretion system protein TP45_07815 PF00291 Pyridoxal-phosphate dependent enzyme TP45_07815 PF00571 CBS domain TP45_07820 PF01053 Cys/Met metabolism PLP-dependent enzyme TP45_07830 PF00534 Glycosyl transferases group 1 TP45_07830 PF13439 Glycosyltransferase Family 4 TP45_07840 PF00005 ABC transporter TP45_07845 PF00069 Protein kinase domain TP45_07845 PF13847 Methyltransferase domain TP45_07850 PF00534 Glycosyl transferases group 1 TP45_07850 PF13477 Glycosyl transferase 4-like TP45_07855 PF16363 GDP-mannose 4,6 dehydratase TP45_07860 PF16363 GDP-mannose 4,6 dehydratase TP45_07870 PF01527 Transposase TP45_07880 PF13276 HTH-like domain TP45_07880 PF13683 Integrase core domain TP45_07885 PF01527 Transposase TP45_07905 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TP45_07905 PF07992 Pyridine nucleotide-disulphide oxidoreductase TP45_07910 PF01370 NAD dependent epimerase/dehydratase family TP45_07915 PF00106 short chain dehydrogenase TP45_07920 PF04030 D-arabinono-1,4-lactone oxidase TP45_07920 PF01565 FAD binding domain TP45_07925 PF01040 UbiA prenyltransferase family TP45_07935 PF01012 Electron transfer flavoprotein domain TP45_07935 PF00766 Electron transfer flavoprotein FAD-binding domain TP45_07940 PF01012 Electron transfer flavoprotein domain TP45_07945 PF16363 GDP-mannose 4,6 dehydratase TP45_07950 PF00483 Nucleotidyl transferase TP45_07955 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase TP45_07960 PF04321 RmlD substrate binding domain TP45_07965 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TP45_07965 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TP45_07965 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TP45_07970 PF00483 Nucleotidyl transferase TP45_07970 PF01050 Mannose-6-phosphate isomerase TP45_07975 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TP45_07975 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TP45_07975 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TP45_07975 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TP45_07980 PF01144 Coenzyme A transferase TP45_07985 PF01144 Coenzyme A transferase TP45_08005 PF03886 ABC-type transport auxiliary lipoprotein component TP45_08005 PF02470 MlaD protein TP45_08010 PF00005 ABC transporter TP45_08015 PF02405 Permease MlaE TP45_08050 PF13732 Domain of unknown function (DUF4162) TP45_08050 PF00005 ABC transporter TP45_08055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TP45_08060 PF00324 Amino acid permease TP45_08065 PF02574 Homocysteine S-methyltransferase TP45_08075 PF02592 Putative vitamin uptake transporter TP45_08095 PF03551 Transcriptional regulator PadR-like family TP45_08130 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit TP45_08135 PF07733 Bacterial DNA polymerase III alpha NTPase domain TP45_08135 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TP45_08135 PF14579 Helix-hairpin-helix motif TP45_08135 PF02811 PHP domain TP45_08135 PF01336 OB-fold nucleic acid binding domain TP45_08140 PF01351 Ribonuclease HII TP45_08145 PF02684 Lipid-A-disaccharide synthetase TP45_08150 PF00132 Bacterial transferase hexapeptide (six repeats) TP45_08150 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 TP45_08155 PF07977 FabA-like domain TP45_08160 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD TP45_08160 PF00132 Bacterial transferase hexapeptide (six repeats) TP45_08170 PF07244 Surface antigen variable number repeat TP45_08170 PF01103 Surface antigen TP45_08175 PF02163 Peptidase family M50 TP45_08175 PF17820 PDZ domain TP45_08180 PF13288 DXP reductoisomerase C-terminal domain TP45_08180 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TP45_08180 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TP45_08190 PF01255 Putative undecaprenyl diphosphate synthase TP45_08195 PF01765 Ribosome recycling factor TP45_08200 PF00696 Amino acid kinase family TP45_08205 PF00072 Response regulator receiver domain TP45_08205 PF00990 Diguanylate cyclase, GGDEF domain TP45_08210 PF00889 Elongation factor TS TP45_08215 PF00318 Ribosomal protein S2 TP45_08250 PF00557 Metallopeptidase family M24 TP45_08255 PF08335 GlnD PII-uridylyltransferase TP45_08255 PF01909 Nucleotidyltransferase domain TP45_08255 PF01966 HD domain TP45_08260 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal TP45_08260 PF00132 Bacterial transferase hexapeptide (six repeats) TP45_08260 PF14602 Hexapeptide repeat of succinyl-transferase TP45_08265 PF03960 ArsC family TP45_08270 PF07687 Peptidase dimerisation domain TP45_08270 PF01546 Peptidase family M20/M25/M40 TP45_08275 PF13537 Glutamine amidotransferase domain TP45_08275 PF00733 Asparagine synthase TP45_08285 PF07715 TonB-dependent Receptor Plug Domain TP45_08285 PF00593 TonB dependent receptor TP45_08290 PF01804 Penicillin amidase TP45_08295 PF00210 Ferritin-like domain TP45_08300 PF05724 Thiopurine S-methyltransferase (TPMT) TP45_08305 PF03989 DNA gyrase C-terminal domain, beta-propeller TP45_08305 PF00521 DNA gyrase/topoisomerase IV, subunit A TP45_08320 PF02321 Outer membrane efflux protein TP45_08325 PF00529 HlyD membrane-fusion protein of T1SS TP45_08325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TP45_08330 PF07690 Major Facilitator Superfamily TP45_08340 PF01915 Glycosyl hydrolase family 3 C-terminal domain TP45_08340 PF00933 Glycosyl hydrolase family 3 N terminal domain TP45_08340 PF14310 Fibronectin type III-like domain TP45_08375 PF12802 MarR family TP45_08380 PF01432 Peptidase family M3 TP45_08385 PF00255 Glutathione peroxidase TP45_08390 PF00175 Oxidoreductase NAD-binding domain TP45_08390 PF00970 Oxidoreductase FAD-binding domain TP45_08395 PF00005 ABC transporter TP45_08400 PF05683 Fumarase C-terminus TP45_08400 PF05681 Fumarate hydratase (Fumerase) TP45_08410 PF00484 Carbonic anhydrase TP45_08415 PF02253 Phospholipase A1 TP45_08425 PF00313 'Cold-shock' DNA-binding domain TP45_08440 PF00899 ThiF family TP45_08445 PF01026 TatD related DNase TP45_08460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TP45_08460 PF02770 Acyl-CoA dehydrogenase, middle domain TP45_08460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TP45_08470 PF02798 Glutathione S-transferase, N-terminal domain TP45_08470 PF00043 Glutathione S-transferase, C-terminal domain TP45_08480 PF00733 Asparagine synthase TP45_08480 PF13537 Glutamine amidotransferase domain TP45_08485 PF03358 NADPH-dependent FMN reductase TP45_08490 PF00772 DnaB-like helicase N terminal domain TP45_08490 PF03796 DnaB-like helicase C terminal domain TP45_08495 PF00875 DNA photolyase TP45_08495 PF03441 FAD binding domain of DNA photolyase TP45_08500 PF05736 OprF membrane domain TP45_08500 PF00691 OmpA family TP45_08505 PF03466 LysR substrate binding domain TP45_08505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_08520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TP45_08525 PF00873 AcrB/AcrD/AcrF family TP45_08530 PF00106 short chain dehydrogenase TP45_08535 PF02321 Outer membrane efflux protein TP45_08540 PF08448 PAS fold TP45_08540 PF00990 Diguanylate cyclase, GGDEF domain TP45_08580 PF01695 IstB-like ATP binding protein TP45_08585 PF00665 Integrase core domain TP45_08615 PF01609 Transposase DDE domain TP45_08615 PF05598 Transposase domain (DUF772) TP45_08625 PF04542 Sigma-70 region 2 TP45_08625 PF08281 Sigma-70, region 4 TP45_08630 PF04773 FecR protein TP45_08630 PF16220 Domain of unknown function (DUF4880) TP45_08640 PF01527 Transposase TP45_08645 PF13276 HTH-like domain TP45_08645 PF00665 Integrase core domain TP45_08645 PF13333 Integrase core domain TP45_08655 PF00593 TonB dependent receptor TP45_08655 PF07715 TonB-dependent Receptor Plug Domain TP45_08670 PF05598 Transposase domain (DUF772) TP45_08670 PF01609 Transposase DDE domain TP45_08685 PF01609 Transposase DDE domain TP45_08685 PF05598 Transposase domain (DUF772) TP45_08695 PF03193 RsgA GTPase TP45_08710 PF00128 Alpha amylase, catalytic domain TP45_08725 PF00356 Bacterial regulatory proteins, lacI family TP45_08730 PF05598 Transposase domain (DUF772) TP45_08730 PF01609 Transposase DDE domain TP45_08735 PF00106 short chain dehydrogenase TP45_08740 PF03600 Citrate transporter TP45_08750 PF00072 Response regulator receiver domain TP45_08750 PF00486 Transcriptional regulatory protein, C terminal TP45_08755 PF00512 His Kinase A (phospho-acceptor) domain TP45_08755 PF08521 Two-component sensor kinase N-terminal TP45_08755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_08765 PF00072 Response regulator receiver domain TP45_08765 PF00196 Bacterial regulatory proteins, luxR family TP45_08780 PF00248 Aldo/keto reductase family TP45_08790 PF03466 LysR substrate binding domain TP45_08790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_08800 PF07690 Major Facilitator Superfamily TP45_08805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_08805 PF02743 Cache domain TP45_08805 PF00512 His Kinase A (phospho-acceptor) domain TP45_08820 PF00375 Sodium:dicarboxylate symporter family TP45_08825 PF00390 Malic enzyme, N-terminal domain TP45_08825 PF01515 Phosphate acetyl/butaryl transferase TP45_08825 PF03949 Malic enzyme, NAD binding domain TP45_08840 PF00529 HlyD membrane-fusion protein of T1SS TP45_08840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TP45_08855 PF13276 HTH-like domain TP45_08855 PF13683 Integrase core domain TP45_08860 PF01527 Transposase TP45_08875 PF00082 Subtilase family TP45_08880 PF01668 SmpB protein TP45_08885 PF03364 Polyketide cyclase / dehydrase and lipid transport TP45_08890 PF03658 RnfH family Ubiquitin TP45_08895 PF04355 SmpA / OmlA family TP45_08900 PF01475 Ferric uptake regulator family TP45_08905 PF02463 RecF/RecN/SMC N terminal domain TP45_08910 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding TP45_08910 PF01628 HrcA protein C terminal domain TP45_08915 PF01025 GrpE TP45_08920 PF00012 Hsp70 protein TP45_08925 PF01556 DnaJ C terminal domain TP45_08925 PF00684 DnaJ central domain TP45_08925 PF00226 DnaJ domain TP45_08930 PF08543 Phosphomethylpyrimidine kinase TP45_08955 PF00005 ABC transporter TP45_08955 PF00664 ABC transporter transmembrane region TP45_08955 PF03412 Peptidase C39 family TP45_08960 PF03466 LysR substrate binding domain TP45_08960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_08965 PF00005 ABC transporter TP45_08965 PF00664 ABC transporter transmembrane region TP45_08970 PF01205 Uncharacterized protein family UPF0029 TP45_08975 PF03641 Possible lysine decarboxylase TP45_08980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TP45_08980 PF07992 Pyridine nucleotide-disulphide oxidoreductase TP45_08985 PF00364 Biotin-requiring enzyme TP45_08985 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TP45_08985 PF02817 e3 binding domain TP45_08990 PF02779 Transketolase, pyrimidine binding domain TP45_08990 PF00676 Dehydrogenase E1 component TP45_08990 PF16870 2-oxoglutarate dehydrogenase C-terminal TP45_08990 PF16078 2-oxoglutarate dehydrogenase N-terminus TP45_09000 PF08007 Cupin superfamily protein TP45_09005 PF01527 Transposase TP45_09010 PF13276 HTH-like domain TP45_09010 PF00665 Integrase core domain TP45_09010 PF13333 Integrase core domain TP45_09020 PF00206 Lyase TP45_09020 PF08328 Adenylosuccinate lyase C-terminal TP45_09025 PF01595 Cyclin M transmembrane N-terminal domain TP45_09025 PF03471 Transporter associated domain TP45_09025 PF00571 CBS domain TP45_09030 PF00206 Lyase TP45_09030 PF10415 Fumarase C C-terminus TP45_09055 PF00005 ABC transporter TP45_09060 PF00392 Bacterial regulatory proteins, gntR family TP45_09065 PF00255 Glutathione peroxidase TP45_09070 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase TP45_09070 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TP45_09075 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TP45_09075 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TP45_09075 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TP45_09080 PF04102 SlyX TP45_09095 PF00356 Bacterial regulatory proteins, lacI family TP45_09100 PF07690 Major Facilitator Superfamily TP45_09105 PF00294 pfkB family carbohydrate kinase TP45_09115 PF02607 B12 binding domain TP45_09115 PF02574 Homocysteine S-methyltransferase TP45_09115 PF02310 B12 binding domain TP45_09115 PF02965 Vitamin B12 dependent methionine synthase, activation domain TP45_09115 PF00809 Pterin binding enzyme TP45_09120 PF02574 Homocysteine S-methyltransferase TP45_09120 PF00809 Pterin binding enzyme TP45_09125 PF01209 ubiE/COQ5 methyltransferase family TP45_09130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TP45_09130 PF02770 Acyl-CoA dehydrogenase, middle domain TP45_09130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TP45_09135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TP45_09135 PF02770 Acyl-CoA dehydrogenase, middle domain TP45_09135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TP45_09140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TP45_09140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TP45_09140 PF02770 Acyl-CoA dehydrogenase, middle domain TP45_09145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TP45_09145 PF02770 Acyl-CoA dehydrogenase, middle domain TP45_09145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TP45_09150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TP45_09150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TP45_09150 PF02770 Acyl-CoA dehydrogenase, middle domain TP45_09155 PF02770 Acyl-CoA dehydrogenase, middle domain TP45_09155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TP45_09155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TP45_09160 PF02770 Acyl-CoA dehydrogenase, middle domain TP45_09160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TP45_09160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TP45_09165 PF02770 Acyl-CoA dehydrogenase, middle domain TP45_09165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TP45_09165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TP45_09170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TP45_09170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TP45_09170 PF02770 Acyl-CoA dehydrogenase, middle domain TP45_09185 PF17876 Cold shock domain TP45_09185 PF08461 Ribonuclease R winged-helix domain TP45_09185 PF00575 S1 RNA binding domain TP45_09185 PF00773 RNB domain TP45_09185 PF08206 Ribonuclease B OB domain TP45_09205 PF08032 RNA 2'-O ribose methyltransferase substrate binding TP45_09205 PF00588 SpoU rRNA Methylase family TP45_09210 PF07694 5TMR of 5TMR-LYT TP45_09210 PF00990 Diguanylate cyclase, GGDEF domain TP45_09215 PF00929 Exonuclease TP45_09225 PF01895 PhoU domain TP45_09230 PF00005 ABC transporter TP45_09235 PF00528 Binding-protein-dependent transport system inner membrane component TP45_09240 PF00528 Binding-protein-dependent transport system inner membrane component TP45_09245 PF12849 PBP superfamily domain TP45_09250 PF12849 PBP superfamily domain TP45_09265 PF00484 Carbonic anhydrase TP45_09270 PF01740 STAS domain TP45_09270 PF00916 Sulfate permease family TP45_09275 PF00730 HhH-GPD superfamily base excision DNA repair protein TP45_09275 PF10576 Iron-sulfur binding domain of endonuclease III TP45_09275 PF00633 Helix-hairpin-helix motif TP45_09285 PF00378 Enoyl-CoA hydratase/isomerase TP45_09290 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TP45_09290 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase TP45_09295 PF00293 NUDIX domain TP45_09300 PF00581 Rhodanese-like domain TP45_09335 PF01170 Putative RNA methylase family UPF0020 TP45_09335 PF02926 THUMP domain TP45_09335 PF10672 S-adenosylmethionine-dependent methyltransferase TP45_09340 PF01513 ATP-NAD kinase TP45_09360 PF08411 Exonuclease C-terminal TP45_09360 PF00929 Exonuclease TP45_09365 PF01494 FAD binding domain TP45_09370 PF00266 Aminotransferase class-V TP45_09380 PF06052 3-hydroxyanthranilic acid dioxygenase TP45_09385 PF00484 Carbonic anhydrase TP45_09430 PF00196 Bacterial regulatory proteins, luxR family TP45_09430 PF00072 Response regulator receiver domain TP45_09470 PF01336 OB-fold nucleic acid binding domain TP45_09470 PF00152 tRNA synthetases class II (D, K and N) TP45_09475 PF01521 Iron-sulphur cluster biosynthesis TP45_09480 PF01250 Ribosomal protein S6 TP45_09485 PF01084 Ribosomal protein S18 TP45_09490 PF03948 Ribosomal protein L9, C-terminal domain TP45_09490 PF01281 Ribosomal protein L9, N-terminal domain TP45_09500 PF02463 RecF/RecN/SMC N terminal domain TP45_09505 PF04354 ZipA, C-terminal FtsZ-binding domain TP45_09520 PF00533 BRCA1 C Terminus (BRCT) domain TP45_09520 PF03119 NAD-dependent DNA ligase C4 zinc finger domain TP45_09520 PF03120 NAD-dependent DNA ligase OB-fold domain TP45_09520 PF01653 NAD-dependent DNA ligase adenylation domain TP45_09520 PF12826 Helix-hairpin-helix motif TP45_09525 PF00152 tRNA synthetases class II (D, K and N) TP45_09535 PF01008 Initiation factor 2 subunit family TP45_09540 PF03989 DNA gyrase C-terminal domain, beta-propeller TP45_09540 PF00521 DNA gyrase/topoisomerase IV, subunit A TP45_09545 PF13360 PQQ-like domain TP45_09555 PF17391 Urocanase N-terminal domain TP45_09555 PF17392 Urocanase C-terminal domain TP45_09555 PF01175 Urocanase Rossmann-like domain TP45_09565 PF00221 Aromatic amino acid lyase TP45_09570 PF07969 Amidohydrolase family TP45_09585 PF07702 UTRA domain TP45_09585 PF00392 Bacterial regulatory proteins, gntR family TP45_09610 PF01794 Ferric reductase like transmembrane component TP45_09615 PF00174 Oxidoreductase molybdopterin binding domain TP45_09620 PF00266 Aminotransferase class-V TP45_09625 PF01817 Chorismate mutase type II TP45_09625 PF00800 Prephenate dehydratase TP45_09625 PF01842 ACT domain TP45_09630 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TP45_09640 PF03544 Gram-negative bacterial TonB protein C-terminal TP45_09645 PF02403 Seryl-tRNA synthetase N-terminal domain TP45_09645 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TP45_09650 PF02525 Flavodoxin-like fold TP45_09655 PF03466 LysR substrate binding domain TP45_09655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_09670 PF00672 HAMP domain TP45_09670 PF02203 Tar ligand binding domain homologue TP45_09670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_09695 PF08448 PAS fold TP45_09695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_09695 PF00512 His Kinase A (phospho-acceptor) domain TP45_09695 PF13188 PAS domain TP45_09695 PF00072 Response regulator receiver domain TP45_09700 PF00512 His Kinase A (phospho-acceptor) domain TP45_09700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_09700 PF00072 Response regulator receiver domain TP45_09700 PF00672 HAMP domain TP45_09700 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TP45_09700 PF01627 Hpt domain TP45_09705 PF06745 KaiC TP45_09710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_09710 PF13426 PAS domain TP45_09710 PF00072 Response regulator receiver domain TP45_09720 PF03918 Cytochrome C biogenesis protein TP45_09725 PF08534 Redoxin TP45_09730 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal TP45_09730 PF01578 Cytochrome C assembly protein TP45_09735 PF03100 CcmE TP45_09740 PF04995 Heme exporter protein D (CcmD) TP45_09745 PF01578 Cytochrome C assembly protein TP45_09750 PF00082 Subtilase family TP45_09760 PF08281 Sigma-70, region 4 TP45_09760 PF04542 Sigma-70 region 2 TP45_09770 PF00034 Cytochrome c TP45_09785 PF05523 WxcM-like, C-terminal TP45_09805 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TP45_09810 PF01943 Polysaccharide biosynthesis protein TP45_09815 PF00535 Glycosyl transferase family 2 TP45_09830 PF08241 Methyltransferase domain TP45_09865 PF00005 ABC transporter TP45_09870 PF00005 ABC transporter TP45_09870 PF00664 ABC transporter transmembrane region TP45_09875 PF07690 Major Facilitator Superfamily TP45_09880 PF00296 Luciferase-like monooxygenase TP45_09895 PF01595 Cyclin M transmembrane N-terminal domain TP45_09895 PF03471 Transporter associated domain TP45_09895 PF00571 CBS domain TP45_09905 PF01384 Phosphate transporter family TP45_09920 PF01751 Toprim domain TP45_09920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_09920 PF00986 DNA gyrase B subunit, carboxyl terminus TP45_09920 PF00204 DNA gyrase B TP45_09930 PF00117 Glutamine amidotransferase class-I TP45_09930 PF06418 CTP synthase N-terminus TP45_09935 PF00793 DAHP synthetase I family TP45_09945 PF03952 Enolase, N-terminal domain TP45_09945 PF00113 Enolase, C-terminal TIM barrel domain TP45_09950 PF04977 Septum formation initiator TP45_09955 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TP45_09960 PF02542 YgbB family TP45_09965 PF01142 tRNA pseudouridine synthase D (TruD) TP45_09970 PF01713 Smr domain TP45_09975 PF01975 Survival protein SurE TP45_09985 PF09335 SNARE associated Golgi protein TP45_09990 PF01476 LysM domain TP45_09990 PF01551 Peptidase family M23 TP45_09995 PF04430 Protein of unknown function (DUF498/DUF598) TP45_10000 PF01985 CRS1 / YhbY (CRM) domain TP45_10005 PF01728 FtsJ-like methyltransferase TP45_10010 PF17862 AAA+ lid domain TP45_10010 PF06480 FtsH Extracellular TP45_10010 PF00004 ATPase family associated with various cellular activities (AAA) TP45_10010 PF01434 Peptidase family M41 TP45_10015 PF00809 Pterin binding enzyme TP45_10025 PF17209 Hfq protein TP45_10030 PF01926 50S ribosome-binding GTPase TP45_10030 PF13167 GTP-binding GTPase N-terminal TP45_10030 PF16360 GTP-binding GTPase Middle Region TP45_10035 PF02464 Competence-damaged protein TP45_10040 PF03109 ABC1 family TP45_10045 PF01726 LexA DNA binding domain TP45_10045 PF00717 Peptidase S24-like TP45_10050 PF00154 recA bacterial DNA recombination protein TP45_10055 PF02631 RecX family TP45_10060 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TP45_10060 PF01411 tRNA synthetases class II (A) TP45_10060 PF02272 DHHA1 domain TP45_10065 PF02599 Global regulator protein family TP45_10075 PF08447 PAS fold TP45_10075 PF13426 PAS domain TP45_10075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_10080 PF02678 Pirin TP45_10080 PF17954 Quercetinase C-terminal cupin domain TP45_10090 PF03466 LysR substrate binding domain TP45_10090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_10115 PF08543 Phosphomethylpyrimidine kinase TP45_10130 PF13638 PIN domain TP45_10130 PF02562 PhoH-like protein TP45_10135 PF00578 AhpC/TSA family TP45_10150 PF00701 Dihydrodipicolinate synthetase family TP45_10160 PF11953 Domain of unknown function (DUF3470) TP45_10160 PF00037 4Fe-4S binding domain TP45_10165 PF05035 2-keto-3-deoxy-galactonokinase TP45_10170 PF08450 SMP-30/Gluconolactonase/LRE-like region TP45_10175 PF13378 Enolase C-terminal domain-like TP45_10175 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TP45_10180 PF01081 KDPG and KHG aldolase TP45_10190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_10190 PF03466 LysR substrate binding domain TP45_10205 PF00942 Cellulose binding domain TP45_10205 PF03442 Carbohydrate binding domain X2 TP45_10215 PF02449 Beta-galactosidase TP45_10215 PF08533 Beta-galactosidase C-terminal domain TP45_10215 PF08532 Beta-galactosidase trimerisation domain TP45_10220 PF16338 Domain of unknown function (DUF4968) TP45_10220 PF01055 Glycosyl hydrolases family 31 TP45_10220 PF17137 Domain of unknown function (DUF5110) TP45_10230 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TP45_10230 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TP45_10240 PF00083 Sugar (and other) transporter TP45_10265 PF02649 Type I GTP cyclohydrolase folE2 TP45_10275 PF01743 Poly A polymerase head domain TP45_10275 PF12626 Polymerase A arginine-rich C-terminus TP45_10275 PF12627 Probable RNA and SrmB- binding site of polymerase A TP45_10280 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TP45_10285 PF02548 Ketopantoate hydroxymethyltransferase TP45_10290 PF02569 Pantoate-beta-alanine ligase TP45_10295 PF02261 Aspartate decarboxylase TP45_10300 PF00342 Phosphoglucose isomerase TP45_10320 PF00933 Glycosyl hydrolase family 3 N terminal domain TP45_10320 PF14310 Fibronectin type III-like domain TP45_10320 PF01915 Glycosyl hydrolase family 3 C-terminal domain TP45_10325 PF00474 Sodium:solute symporter family TP45_10330 PF00563 EAL domain TP45_10330 PF01590 GAF domain TP45_10330 PF00990 Diguanylate cyclase, GGDEF domain TP45_10330 PF00360 Phytochrome region TP45_10335 PF00150 Cellulase (glycosyl hydrolase family 5) TP45_10335 PF02013 Cellulose or protein binding domain TP45_10340 PF00072 Response regulator receiver domain TP45_10350 PF04551 GcpE protein TP45_10355 PF01569 PAP2 superfamily TP45_10360 PF07690 Major Facilitator Superfamily TP45_10365 PF01177 Asp/Glu/Hydantoin racemase TP45_10370 PF00892 EamA-like transporter family TP45_10375 PF01565 FAD binding domain TP45_10375 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TP45_10380 PF01180 Dihydroorotate dehydrogenase TP45_10395 PF00171 Aldehyde dehydrogenase family TP45_10405 PF01609 Transposase DDE domain TP45_10405 PF05598 Transposase domain (DUF772) TP45_10410 PF01527 Transposase TP45_10415 PF13276 HTH-like domain TP45_10415 PF13683 Integrase core domain TP45_10425 PF01842 ACT domain TP45_10425 PF13840 ACT domain TP45_10425 PF00742 Homoserine dehydrogenase TP45_10425 PF03447 Homoserine dehydrogenase, NAD binding domain TP45_10425 PF00696 Amino acid kinase family TP45_10430 PF00288 GHMP kinases N terminal domain TP45_10430 PF08544 GHMP kinases C terminal TP45_10440 PF00291 Pyridoxal-phosphate dependent enzyme TP45_10440 PF14821 Threonine synthase N terminus TP45_10450 PF00027 Cyclic nucleotide-binding domain TP45_10450 PF13545 Crp-like helix-turn-helix domain TP45_10455 PF13393 Histidyl-tRNA synthetase TP45_10455 PF03129 Anticodon binding domain TP45_10465 PF08029 HisG, C-terminal domain TP45_10465 PF01634 ATP phosphoribosyltransferase TP45_10470 PF00815 Histidinol dehydrogenase TP45_10475 PF00155 Aminotransferase class I and II TP45_10480 PF00475 Imidazoleglycerol-phosphate dehydratase TP45_10485 PF00117 Glutamine amidotransferase class-I TP45_10490 PF00977 Histidine biosynthesis protein TP45_10495 PF00977 Histidine biosynthesis protein TP45_10500 PF01502 Phosphoribosyl-AMP cyclohydrolase TP45_10500 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase TP45_10525 PF03079 ARD/ARD' family TP45_10530 PF00596 Class II Aldolase and Adducin N-terminal domain TP45_10535 PF13520 Amino acid permease TP45_10540 PF13520 Amino acid permease TP45_10550 PF01842 ACT domain TP45_10550 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TP45_10550 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TP45_10555 PF02913 FAD linked oxidases, C-terminal domain TP45_10555 PF01565 FAD binding domain TP45_10575 PF08207 Elongation factor P (EF-P) KOW-like domain TP45_10575 PF09285 Elongation factor P, C-terminal TP45_10575 PF01132 Elongation factor P (EF-P) OB domain TP45_10580 PF00106 short chain dehydrogenase TP45_10585 PF00682 HMGL-like TP45_10595 PF00378 Enoyl-CoA hydratase/isomerase TP45_10605 PF02421 Ferrous iron transport protein B TP45_10605 PF07670 Nucleoside recognition TP45_10605 PF07664 Ferrous iron transport protein B C terminus TP45_10620 PF00155 Aminotransferase class I and II TP45_10625 PF03473 MOSC domain TP45_10625 PF03475 3-alpha domain TP45_10630 PF05173 Dihydrodipicolinate reductase, C-terminus TP45_10630 PF01113 Dihydrodipicolinate reductase, N-terminus TP45_10635 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain TP45_10635 PF00117 Glutamine amidotransferase class-I TP45_10645 PF02142 MGS-like domain TP45_10645 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TP45_10645 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TP45_10650 PF01272 Transcription elongation factor, GreA/GreB, C-term TP45_10650 PF03449 Transcription elongation factor, N-terminal TP45_10660 PF02272 DHHA1 domain TP45_10660 PF17768 RecJ OB domain TP45_10660 PF01368 DHH family TP45_10670 PF00072 Response regulator receiver domain TP45_10670 PF04397 LytTr DNA-binding domain TP45_10675 PF00472 RF-1 domain TP45_10675 PF03462 PCRF domain TP45_10680 PF01336 OB-fold nucleic acid binding domain TP45_10680 PF00152 tRNA synthetases class II (D, K and N) TP45_10685 PF00072 Response regulator receiver domain TP45_10690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_10690 PF00512 His Kinase A (phospho-acceptor) domain TP45_10690 PF00072 Response regulator receiver domain TP45_10690 PF01627 Hpt domain TP45_10695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_10695 PF01627 Hpt domain TP45_10695 PF00512 His Kinase A (phospho-acceptor) domain TP45_10695 PF00072 Response regulator receiver domain TP45_10700 PF00378 Enoyl-CoA hydratase/isomerase TP45_10705 PF13193 AMP-binding enzyme C-terminal domain TP45_10705 PF00501 AMP-binding enzyme TP45_10720 PF00330 Aconitase family (aconitate hydratase) TP45_10720 PF00694 Aconitase C-terminal domain TP45_10735 PF11791 Aconitate B N-terminal domain TP45_10735 PF06434 Aconitate hydratase 2 N-terminus TP45_10735 PF00330 Aconitase family (aconitate hydratase) TP45_10740 PF00561 alpha/beta hydrolase fold TP45_10745 PF03707 Bacterial signalling protein N terminal repeat TP45_10745 PF00990 Diguanylate cyclase, GGDEF domain TP45_10745 PF00563 EAL domain TP45_10750 PF00072 Response regulator receiver domain TP45_10750 PF01339 CheB methylesterase TP45_10755 PF03975 CheD chemotactic sensory transduction TP45_10760 PF01739 CheR methyltransferase, SAM binding domain TP45_10760 PF03705 CheR methyltransferase, all-alpha domain TP45_10765 PF00672 HAMP domain TP45_10765 PF02203 Tar ligand binding domain homologue TP45_10765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_10775 PF01584 CheW-like domain TP45_10780 PF07238 PilZ domain TP45_10780 PF07317 Flagellar regulator YcgR TP45_10785 PF02203 Tar ligand binding domain homologue TP45_10785 PF00672 HAMP domain TP45_10785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_10790 PF00672 HAMP domain TP45_10790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_10790 PF02203 Tar ligand binding domain homologue TP45_10795 PF00672 HAMP domain TP45_10795 PF02203 Tar ligand binding domain homologue TP45_10795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_10800 PF02203 Tar ligand binding domain homologue TP45_10800 PF00672 HAMP domain TP45_10800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_10805 PF02203 Tar ligand binding domain homologue TP45_10805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_10805 PF00672 HAMP domain TP45_10815 PF02203 Tar ligand binding domain homologue TP45_10815 PF00672 HAMP domain TP45_10815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_10830 PF02203 Tar ligand binding domain homologue TP45_10830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_10830 PF00672 HAMP domain TP45_10840 PF00672 HAMP domain TP45_10840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_10840 PF02203 Tar ligand binding domain homologue TP45_10845 PF17200 Single Cache domain 2 TP45_10845 PF00672 HAMP domain TP45_10845 PF17200 Single Cache domain 2 TP45_10845 PF00672 HAMP domain TP45_10845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_10845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_10860 PF02203 Tar ligand binding domain homologue TP45_10860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_10860 PF00672 HAMP domain TP45_10865 PF01627 Hpt domain TP45_10865 PF01584 CheW-like domain TP45_10865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_10865 PF02895 Signal transducing histidine kinase, homodimeric domain TP45_10865 PF09078 CheY binding TP45_10870 PF00072 Response regulator receiver domain TP45_10880 PF01584 CheW-like domain TP45_10885 PF13614 AAA domain TP45_10890 PF13677 Membrane MotB of proton-channel complex MotA/MotB TP45_10890 PF00691 OmpA family TP45_10895 PF01618 MotA/TolQ/ExbB proton channel family TP45_10920 PF01527 Transposase TP45_10925 PF00665 Integrase core domain TP45_10925 PF13333 Integrase core domain TP45_10925 PF13276 HTH-like domain TP45_10965 PF02895 Signal transducing histidine kinase, homodimeric domain TP45_10965 PF01584 CheW-like domain TP45_10965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_10965 PF01627 Hpt domain TP45_10965 PF07194 P2 response regulator binding domain TP45_10970 PF04344 Chemotaxis phosphatase, CheZ TP45_10975 PF00072 Response regulator receiver domain TP45_10980 PF04542 Sigma-70 region 2 TP45_10980 PF04545 Sigma-70, region 4 TP45_10980 PF04539 Sigma-70 region 3 TP45_10985 PF10609 NUBPL iron-transfer P-loop NTPase TP45_10990 PF00448 SRP54-type protein, GTPase domain TP45_10995 PF00771 FHIPEP family TP45_11000 PF01312 FlhB HrpN YscU SpaS Family TP45_11005 PF00563 EAL domain TP45_11005 PF03707 Bacterial signalling protein N terminal repeat TP45_11005 PF00990 Diguanylate cyclase, GGDEF domain TP45_11010 PF13188 PAS domain TP45_11010 PF00990 Diguanylate cyclase, GGDEF domain TP45_11010 PF00563 EAL domain TP45_11010 PF03707 Bacterial signalling protein N terminal repeat TP45_11025 PF01311 Bacterial export proteins, family 1 TP45_11030 PF01313 Bacterial export proteins, family 3 TP45_11040 PF00813 FliP family TP45_11045 PF04347 Flagellar biosynthesis protein, FliO TP45_11050 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TP45_11055 PF02154 Flagellar motor switch protein FliM TP45_11055 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TP45_11075 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TP45_11075 PF18269 T3SS EscN ATPase C-terminal domain TP45_11085 PF14842 FliG N-terminal domain TP45_11085 PF14841 FliG middle domain TP45_11085 PF01706 FliG C-terminal domain TP45_11090 PF08345 Flagellar M-ring protein C-terminal TP45_11090 PF01514 Secretory protein of YscJ/FliF family TP45_11095 PF02049 Flagellar hook-basal body complex protein FliE TP45_11100 PF00535 Glycosyl transferase family 2 TP45_11100 PF00534 Glycosyl transferases group 1 TP45_11110 PF13276 HTH-like domain TP45_11110 PF00665 Integrase core domain TP45_11110 PF13333 Integrase core domain TP45_11115 PF01527 Transposase TP45_11155 PF01609 Transposase DDE domain TP45_11155 PF05598 Transposase domain (DUF772) TP45_11170 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TP45_11170 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TP45_11180 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TP45_11185 PF02954 Bacterial regulatory protein, Fis family TP45_11185 PF00158 Sigma-54 interaction domain TP45_11185 PF00072 Response regulator receiver domain TP45_11190 PF01339 CheB methylesterase TP45_11190 PF00072 Response regulator receiver domain TP45_11195 PF04552 Sigma-54, DNA binding domain TP45_11195 PF04963 Sigma-54 factor, core binding domain TP45_11195 PF00309 Sigma-54 factor, Activator interacting domain (AID) TP45_11200 PF00072 Response regulator receiver domain TP45_11200 PF00196 Bacterial regulatory proteins, luxR family TP45_11215 PF02561 Flagellar protein FliS TP45_11220 PF07195 Flagellar hook-associated protein 2 C-terminus TP45_11220 PF02465 Flagellar hook-associated protein 2 N-terminus TP45_11220 PF07196 Flagellin hook IN motif TP45_11225 PF00669 Bacterial flagellin N-terminal helical region TP45_11225 PF00700 Bacterial flagellin C-terminal helical region TP45_11230 PF00700 Bacterial flagellin C-terminal helical region TP45_11230 PF00669 Bacterial flagellin N-terminal helical region TP45_11235 PF07196 Flagellin hook IN motif TP45_11235 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TP45_11240 PF10135 Rod binding protein TP45_11240 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase TP45_11245 PF02119 Flagellar P-ring protein TP45_11250 PF02107 Flagellar L-ring protein TP45_11255 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TP45_11255 PF00460 Flagella basal body rod protein TP45_11260 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TP45_11260 PF00460 Flagella basal body rod protein TP45_11265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TP45_11265 PF00460 Flagella basal body rod protein TP45_11265 PF07559 Flagellar basal body protein FlaE TP45_11270 PF03963 Flagellar hook capping protein - N-terminal region TP45_11275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TP45_11275 PF00460 Flagella basal body rod protein TP45_11285 PF01584 CheW-like domain TP45_11285 PF00072 Response regulator receiver domain TP45_11305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_11305 PF13188 PAS domain TP45_11305 PF00989 PAS fold TP45_11305 PF13426 PAS domain TP45_11305 PF00512 His Kinase A (phospho-acceptor) domain TP45_11310 PF00563 EAL domain TP45_11310 PF00990 Diguanylate cyclase, GGDEF domain TP45_11310 PF03707 Bacterial signalling protein N terminal repeat TP45_11315 PF07730 Histidine kinase TP45_11315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_11320 PF03707 Bacterial signalling protein N terminal repeat TP45_11320 PF00563 EAL domain TP45_11320 PF00990 Diguanylate cyclase, GGDEF domain TP45_11330 PF00672 HAMP domain TP45_11330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_11330 PF12729 Four helix bundle sensory module for signal transduction TP45_11335 PF04356 Protein of unknown function (DUF489) TP45_11345 PF00293 NUDIX domain TP45_11350 PF02617 ATP-dependent Clp protease adaptor protein ClpS TP45_11355 PF10431 C-terminal, D2-small domain, of ClpB protein TP45_11355 PF00004 ATPase family associated with various cellular activities (AAA) TP45_11355 PF17871 AAA lid domain TP45_11355 PF07724 AAA domain (Cdc48 subfamily) TP45_11355 PF02861 Clp amino terminal domain, pathogenicity island component TP45_11360 PF01176 Translation initiation factor 1A / IF-1 TP45_11365 PF03588 Leucyl/phenylalanyl-tRNA protein transferase TP45_11375 PF07992 Pyridine nucleotide-disulphide oxidoreductase TP45_11380 PF17854 FtsK alpha domain TP45_11380 PF13491 4TM region of DNA translocase FtsK/SpoIIIE TP45_11380 PF01580 FtsK/SpoIIIE family TP45_11380 PF09397 Ftsk gamma domain TP45_11390 PF03548 Outer membrane lipoprotein carrier protein LolA TP45_11400 PF00004 ATPase family associated with various cellular activities (AAA) TP45_11400 PF16193 AAA C-terminal domain TP45_11400 PF12002 MgsA AAA+ ATPase C terminal TP45_11405 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TP45_11410 PF02803 Thiolase, C-terminal domain TP45_11410 PF00108 Thiolase, N-terminal domain TP45_11415 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TP45_11415 PF00378 Enoyl-CoA hydratase/isomerase TP45_11415 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TP45_11425 PF00334 Nucleoside diphosphate kinase TP45_11430 PF04055 Radical SAM superfamily TP45_11440 PF13464 Domain of unknown function (DUF4115) TP45_11450 PF13360 PQQ-like domain TP45_11450 PF01011 PQQ enzyme repeat TP45_11455 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TP45_11455 PF01926 50S ribosome-binding GTPase TP45_11460 PF00994 Probable molybdopterin binding domain TP45_11460 PF03454 MoeA C-terminal region (domain IV) TP45_11460 PF03453 MoeA N-terminal region (domain I and II) TP45_11465 PF00899 ThiF family TP45_11490 PF08240 Alcohol dehydrogenase GroES-like domain TP45_11490 PF00107 Zinc-binding dehydrogenase TP45_11490 PF13823 Alcohol dehydrogenase GroES-associated TP45_11500 PF03372 Endonuclease/Exonuclease/phosphatase family TP45_11510 PF03454 MoeA C-terminal region (domain IV) TP45_11510 PF03453 MoeA N-terminal region (domain I and II) TP45_11510 PF00994 Probable molybdopterin binding domain TP45_11515 PF12804 MobA-like NTP transferase domain TP45_11540 PF00561 alpha/beta hydrolase fold TP45_11545 PF01566 Natural resistance-associated macrophage protein TP45_11550 PF01325 Iron dependent repressor, N-terminal DNA binding domain TP45_11550 PF02742 Iron dependent repressor, metal binding and dimerisation domain TP45_11555 PF14437 MafB19-like deaminase TP45_11560 PF00929 Exonuclease TP45_11565 PF00924 Mechanosensitive ion channel TP45_11565 PF05552 Conserved TM helix TP45_11570 PF02896 PEP-utilising enzyme, TIM barrel domain TP45_11570 PF00391 PEP-utilising enzyme, mobile domain TP45_11570 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TP45_11575 PF03618 Kinase/pyrophosphorylase TP45_11595 PF01066 CDP-alcohol phosphatidyltransferase TP45_11605 PF00561 alpha/beta hydrolase fold TP45_11620 PF00355 Rieske [2Fe-2S] domain TP45_11620 PF01266 FAD dependent oxidoreductase TP45_11630 PF17674 HHH domain TP45_11630 PF00575 S1 RNA binding domain TP45_11630 PF16921 Tex protein YqgF-like domain TP45_11630 PF09371 Tex-like protein N-terminal domain TP45_11680 PF00034 Cytochrome c TP45_11690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TP45_11695 PF00873 AcrB/AcrD/AcrF family TP45_11700 PF00873 AcrB/AcrD/AcrF family TP45_11705 PF01081 KDPG and KHG aldolase TP45_11710 PF00920 Dehydratase family TP45_11715 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase TP45_11720 PF02685 Glucokinase TP45_11725 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain TP45_11725 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain TP45_11730 PF17912 MalK OB fold domain TP45_11730 PF00005 ABC transporter TP45_11735 PF01571 Aminomethyltransferase folate-binding domain TP45_11740 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit TP45_11745 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit TP45_11750 PF00890 FAD binding domain TP45_11750 PF02910 Fumarate reductase flavoprotein C-term TP45_11760 PF13085 2Fe-2S iron-sulfur cluster binding domain TP45_11765 PF03937 Flavinator of succinate dehydrogenase TP45_11775 PF12704 MacB-like periplasmic core domain TP45_11775 PF02687 FtsX-like permease family TP45_11780 PF00005 ABC transporter TP45_11790 PF00753 Metallo-beta-lactamase superfamily TP45_11790 PF03772 Competence protein TP45_11795 PF01618 MotA/TolQ/ExbB proton channel family TP45_11800 PF02472 Biopolymer transport protein ExbD/TolR TP45_11805 PF00005 ABC transporter TP45_11805 PF00664 ABC transporter transmembrane region TP45_11810 PF02606 Tetraacyldisaccharide-1-P 4'-kinase TP45_11815 PF02348 Cytidylyltransferase TP45_11820 PF01451 Low molecular weight phosphotyrosine protein phosphatase TP45_11830 PF01527 Transposase TP45_11835 PF13333 Integrase core domain TP45_11835 PF13276 HTH-like domain TP45_11835 PF00665 Integrase core domain TP45_11845 PF08459 UvrC Helix-hairpin-helix N-terminal TP45_11845 PF02151 UvrB/uvrC motif TP45_11845 PF01541 GIY-YIG catalytic domain TP45_11850 PF01066 CDP-alcohol phosphatidyltransferase TP45_11875 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TP45_11875 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TP45_11875 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TP45_11885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TP45_11900 PF00196 Bacterial regulatory proteins, luxR family TP45_11900 PF00072 Response regulator receiver domain TP45_11910 PF01479 S4 domain TP45_11910 PF00849 RNA pseudouridylate synthase TP45_11915 PF11737 Protein of unknown function (DUF3300) TP45_11920 PF02535 ZIP Zinc transporter TP45_11930 PF01329 Pterin 4 alpha carbinolamine dehydratase TP45_11935 PF01106 NifU-like domain TP45_11955 PF13406 Transglycosylase SLT domain TP45_11960 PF13700 Domain of unknown function (DUF4158) TP45_11960 PF01526 Tn3 transposase DDE domain TP45_11985 PF01494 FAD binding domain TP45_11990 PF13426 PAS domain TP45_11990 PF07536 HWE histidine kinase TP45_11990 PF13581 Histidine kinase-like ATPase domain TP45_12005 PF01609 Transposase DDE domain TP45_12005 PF05598 Transposase domain (DUF772) TP45_12025 PF03466 LysR substrate binding domain TP45_12025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_12035 PF01527 Transposase TP45_12060 PF00106 short chain dehydrogenase TP45_12065 PF00732 GMC oxidoreductase TP45_12065 PF05199 GMC oxidoreductase TP45_12070 PF08241 Methyltransferase domain TP45_12070 PF12697 Alpha/beta hydrolase family TP45_12110 PF00563 EAL domain TP45_12110 PF08447 PAS fold TP45_12110 PF08448 PAS fold TP45_12110 PF00990 Diguanylate cyclase, GGDEF domain TP45_12130 PF05974 Domain of unknown function (DUF892) TP45_12145 PF10414 Sirohaem synthase dimerisation region TP45_12145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TP45_12145 PF14824 Sirohaem biosynthesis protein central TP45_12160 PF05977 Transmembrane secretion effector TP45_12165 PF07969 Amidohydrolase family TP45_12175 PF00857 Isochorismatase family TP45_12180 PF12833 Helix-turn-helix domain TP45_12215 PF03466 LysR substrate binding domain TP45_12215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_12220 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TP45_12220 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus TP45_12220 PF00361 Proton-conducting membrane transporter TP45_12225 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) TP45_12245 PF00665 Integrase core domain TP45_12245 PF13333 Integrase core domain TP45_12245 PF13276 HTH-like domain TP45_12250 PF01527 Transposase TP45_12280 PF13356 Arm DNA-binding domain TP45_12280 PF00589 Phage integrase family TP45_12285 PF02540 NAD synthase TP45_12285 PF00117 Glutamine amidotransferase class-I TP45_12285 PF00958 GMP synthase C terminal domain TP45_12290 PF00478 IMP dehydrogenase / GMP reductase domain TP45_12290 PF00571 CBS domain TP45_12295 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TP45_12295 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TP45_12305 PF00999 Sodium/hydrogen exchanger family TP45_12305 PF02254 TrkA-N domain TP45_12310 PF00483 Nucleotidyl transferase TP45_12315 PF02719 Polysaccharide biosynthesis protein TP45_12320 PF00953 Glycosyl transferase family 4 TP45_12325 PF18073 Rubredoxin metal binding domain TP45_12335 PF00216 Bacterial DNA-binding protein TP45_12340 PF00575 S1 RNA binding domain TP45_12345 PF02224 Cytidylate kinase TP45_12350 PF00444 Ribosomal protein L36 TP45_12360 PF04371 Porphyromonas-type peptidyl-arginine deiminase TP45_12365 PF00795 Carbon-nitrogen hydrolase TP45_12390 PF00528 Binding-protein-dependent transport system inner membrane component TP45_12395 PF00528 Binding-protein-dependent transport system inner membrane component TP45_12415 PF00356 Bacterial regulatory proteins, lacI family TP45_12425 PF03795 YCII-related domain TP45_12430 PF02616 Segregation and condensation protein ScpA TP45_12435 PF04079 Segregation and condensation complex subunit ScpB TP45_12440 PF00849 RNA pseudouridylate synthase TP45_12440 PF01479 S4 domain TP45_12455 PF00795 Carbon-nitrogen hydrolase TP45_12460 PF00155 Aminotransferase class I and II TP45_12465 PF00005 ABC transporter TP45_12470 PF03379 CcmB protein TP45_12475 PF01578 Cytochrome C assembly protein TP45_12485 PF03100 CcmE TP45_12490 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal TP45_12490 PF01578 Cytochrome C assembly protein TP45_12495 PF08534 Redoxin TP45_12500 PF03918 Cytochrome C biogenesis protein TP45_12510 PF00561 alpha/beta hydrolase fold TP45_12515 PF00313 'Cold-shock' DNA-binding domain TP45_12520 PF00005 ABC transporter TP45_12520 PF00664 ABC transporter transmembrane region TP45_12525 PF00005 ABC transporter TP45_12525 PF00664 ABC transporter transmembrane region TP45_12530 PF01654 Cytochrome bd terminal oxidase subunit I TP45_12535 PF02322 Cytochrome bd terminal oxidase subunit II TP45_12565 PF01381 Helix-turn-helix TP45_12570 PF00004 ATPase family associated with various cellular activities (AAA) TP45_12655 PF00589 Phage integrase family TP45_12665 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain TP45_12665 PF02129 X-Pro dipeptidyl-peptidase (S15 family) TP45_12675 PF00171 Aldehyde dehydrogenase family TP45_12680 PF01472 PUA domain TP45_12680 PF00696 Amino acid kinase family TP45_12690 PF00206 Lyase TP45_12695 PF01118 Semialdehyde dehydrogenase, NAD binding domain TP45_12705 PF00696 Amino acid kinase family TP45_12705 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase TP45_12720 PF00764 Arginosuccinate synthase TP45_12725 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TP45_12725 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TP45_12735 PF09190 DALR domain TP45_12735 PF01406 tRNA synthetases class I (C) catalytic domain TP45_12740 PF02657 Fe-S metabolism associated domain TP45_12750 PF01258 Prokaryotic dksA/traR C4-type zinc finger TP45_12760 PF01809 Putative membrane protein insertion efficiency factor TP45_12765 PF01979 Amidohydrolase family TP45_12770 PF08460 Bacterial SH3 domain TP45_12770 PF01551 Peptidase family M23 TP45_12780 PF06751 Ethanolamine ammonia lyase large subunit (EutB) TP45_12785 PF05985 Ethanolamine ammonia-lyase light chain (EutC) TP45_12795 PF00753 Metallo-beta-lactamase superfamily TP45_12815 PF00295 Glycosyl hydrolases family 28 TP45_12825 PF13419 Haloacid dehalogenase-like hydrolase TP45_12840 PF01979 Amidohydrolase family TP45_12850 PF09285 Elongation factor P, C-terminal TP45_12850 PF08207 Elongation factor P (EF-P) KOW-like domain TP45_12850 PF01132 Elongation factor P (EF-P) OB domain TP45_12855 PF04055 Radical SAM superfamily TP45_12860 PF13188 PAS domain TP45_12860 PF03707 Bacterial signalling protein N terminal repeat TP45_12860 PF00563 EAL domain TP45_12860 PF00990 Diguanylate cyclase, GGDEF domain TP45_12870 PF00588 SpoU rRNA Methylase family TP45_12875 PF00459 Inositol monophosphatase family TP45_12880 PF02777 Iron/manganese superoxide dismutases, C-terminal domain TP45_12880 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain TP45_12885 PF00545 ribonuclease TP45_12900 PF00270 DEAD/DEAH box helicase TP45_12900 PF00271 Helicase conserved C-terminal domain TP45_12900 PF03880 DbpA RNA binding domain TP45_12905 PF00156 Phosphoribosyl transferase domain TP45_12910 PF02696 Uncharacterized ACR, YdiU/UPF0061 family TP45_12915 PF07859 alpha/beta hydrolase fold TP45_12920 PF14497 Glutathione S-transferase, C-terminal domain TP45_12920 PF02798 Glutathione S-transferase, N-terminal domain TP45_12925 PF00313 'Cold-shock' DNA-binding domain TP45_12930 PF07152 YaeQ protein TP45_12940 PF00072 Response regulator receiver domain TP45_12940 PF00563 EAL domain TP45_12940 PF00990 Diguanylate cyclase, GGDEF domain TP45_12945 PF01435 Peptidase family M48 TP45_12950 PF00749 tRNA synthetases class I (E and Q), catalytic domain TP45_12955 PF00106 short chain dehydrogenase TP45_12960 PF05233 PHB accumulation regulatory domain TP45_12960 PF07879 PHB/PHA accumulation regulator DNA-binding domain TP45_12975 PF08676 MutL C terminal dimerisation domain TP45_12975 PF01119 DNA mismatch repair protein, C-terminal domain TP45_12980 PF11741 AMIN domain TP45_12980 PF01520 N-acetylmuramoyl-L-alanine amidase TP45_12985 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TP45_12990 PF01256 Carbohydrate kinase TP45_12990 PF03853 YjeF-related protein N-terminus TP45_12995 PF08331 Domain of unknown function (DUF1730) TP45_13000 PF02601 Exonuclease VII, large subunit TP45_13000 PF13742 OB-fold nucleic acid binding domain TP45_13010 PF03781 Sulfatase-modifying factor enzyme 1 TP45_13015 PF01612 3'-5' exonuclease TP45_13015 PF00570 HRDC domain TP45_13020 PF04679 ATP dependent DNA ligase C terminal region TP45_13020 PF01068 ATP dependent DNA ligase domain TP45_13020 PF13298 DNA polymerase Ligase (LigD) TP45_13050 PF01584 CheW-like domain TP45_13055 PF02743 Cache domain TP45_13055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_13055 PF00672 HAMP domain TP45_13060 PF02245 Methylpurine-DNA glycosylase (MPG) TP45_13065 PF08494 DEAD/H associated TP45_13065 PF00270 DEAD/DEAH box helicase TP45_13065 PF00271 Helicase conserved C-terminal domain TP45_13080 PF04386 Stringent starvation protein B TP45_13085 PF00043 Glutathione S-transferase, C-terminal domain TP45_13085 PF02798 Glutathione S-transferase, N-terminal domain TP45_13090 PF02167 Cytochrome C1 family TP45_13095 PF00033 Cytochrome b/b6/petB TP45_13095 PF00032 Cytochrome b(C-terminal)/b6/petD TP45_13100 PF00355 Rieske [2Fe-2S] domain TP45_13100 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TP45_13105 PF01464 Transglycosylase SLT domain TP45_13120 PF04055 Radical SAM superfamily TP45_13120 PF01938 TRAM domain TP45_13120 PF00919 Uncharacterized protein family UPF0004 TP45_13125 PF02562 PhoH-like protein TP45_13135 PF02130 Uncharacterized protein family UPF0054 TP45_13145 PF03471 Transporter associated domain TP45_13145 PF00571 CBS domain TP45_13160 PF00171 Aldehyde dehydrogenase family TP45_13170 PF00528 Binding-protein-dependent transport system inner membrane component TP45_13175 PF00528 Binding-protein-dependent transport system inner membrane component TP45_13180 PF08402 TOBE domain TP45_13180 PF00005 ABC transporter TP45_13185 PF02321 Outer membrane efflux protein TP45_13190 PF07690 Major Facilitator Superfamily TP45_13195 PF13533 Biotin-lipoyl like TP45_13200 PF13416 Bacterial extracellular solute-binding protein TP45_13205 PF00202 Aminotransferase class-III TP45_13210 PF00120 Glutamine synthetase, catalytic domain TP45_13215 PF07722 Peptidase C26 TP45_13220 PF00120 Glutamine synthetase, catalytic domain TP45_13225 PF01266 FAD dependent oxidoreductase TP45_13230 PF00990 Diguanylate cyclase, GGDEF domain TP45_13230 PF00072 Response regulator receiver domain TP45_13235 PF01814 Hemerythrin HHE cation binding domain TP45_13240 PF07690 Major Facilitator Superfamily TP45_13240 PF00083 Sugar (and other) transporter TP45_13255 PF00384 Molybdopterin oxidoreductase TP45_13260 PF02634 FdhD/NarQ family TP45_13265 PF07690 Major Facilitator Superfamily TP45_13280 PF04286 Protein of unknown function (DUF445) TP45_13285 PF01627 Hpt domain TP45_13285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_13285 PF00512 His Kinase A (phospho-acceptor) domain TP45_13285 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) TP45_13285 PF00072 Response regulator receiver domain TP45_13285 PF00672 HAMP domain TP45_13290 PF00072 Response regulator receiver domain TP45_13295 PF07690 Major Facilitator Superfamily TP45_13325 PF05088 Bacterial NAD-glutamate dehydrogenase TP45_13335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TP45_13335 PF00529 HlyD membrane-fusion protein of T1SS TP45_13340 PF00873 AcrB/AcrD/AcrF family TP45_13345 PF00356 Bacterial regulatory proteins, lacI family TP45_13350 PF00391 PEP-utilising enzyme, mobile domain TP45_13350 PF05524 PEP-utilising enzyme, N-terminal TP45_13350 PF02896 PEP-utilising enzyme, TIM barrel domain TP45_13350 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TP45_13350 PF00381 PTS HPr component phosphorylation site TP45_13355 PF00294 pfkB family carbohydrate kinase TP45_13360 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit TP45_13365 PF13276 HTH-like domain TP45_13365 PF13683 Integrase core domain TP45_13370 PF01527 Transposase TP45_13385 PF07549 SecD/SecF GG Motif TP45_13385 PF02355 Protein export membrane protein TP45_13390 PF07549 SecD/SecF GG Motif TP45_13390 PF02355 Protein export membrane protein TP45_13390 PF13721 SecD export protein N-terminal TM region TP45_13395 PF02699 Preprotein translocase subunit TP45_13400 PF01702 Queuine tRNA-ribosyltransferase TP45_13405 PF02547 Queuosine biosynthesis protein TP45_13450 PF13333 Integrase core domain TP45_13450 PF00665 Integrase core domain TP45_13450 PF13276 HTH-like domain TP45_13455 PF01527 Transposase TP45_13460 PF02927 Cellulase N-terminal ig-like domain TP45_13460 PF00759 Glycosyl hydrolase family 9 TP45_13475 PF00037 4Fe-4S binding domain TP45_13490 PF01467 Cytidylyltransferase-like TP45_13500 PF00183 Hsp90 protein TP45_13500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_13515 PF01527 Transposase TP45_13520 PF13333 Integrase core domain TP45_13520 PF00665 Integrase core domain TP45_13520 PF13276 HTH-like domain TP45_13530 PF01609 Transposase DDE domain TP45_13530 PF05598 Transposase domain (DUF772) TP45_13545 PF00593 TonB dependent receptor TP45_13545 PF07715 TonB-dependent Receptor Plug Domain TP45_13555 PF04616 Glycosyl hydrolases family 43 TP45_13560 PF07532 Bacterial Ig-like domain (group 4) TP45_13565 PF00593 TonB dependent receptor TP45_13565 PF07715 TonB-dependent Receptor Plug Domain TP45_13575 PF00082 Subtilase family TP45_13575 PF09286 Pro-kumamolisin, activation domain TP45_13600 PF13520 Amino acid permease TP45_13615 PF00557 Metallopeptidase family M24 TP45_13615 PF01321 Creatinase/Prolidase N-terminal domain TP45_13620 PF00171 Aldehyde dehydrogenase family TP45_13625 PF00701 Dihydrodipicolinate synthetase family TP45_13630 PF04324 BFD-like [2Fe-2S] binding domain TP45_13630 PF07992 Pyridine nucleotide-disulphide oxidoreductase TP45_13640 PF01266 FAD dependent oxidoreductase TP45_13645 PF05544 Proline racemase TP45_13655 PF00448 SRP54-type protein, GTPase domain TP45_13655 PF02881 SRP54-type protein, helical bundle domain TP45_13660 PF14815 NUDIX domain TP45_13660 PF00730 HhH-GPD superfamily base excision DNA repair protein TP45_13660 PF00633 Helix-hairpin-helix motif TP45_13660 PF10576 Iron-sulfur binding domain of endonuclease III TP45_13665 PF04362 Bacterial Fe(2+) trafficking TP45_13670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_13670 PF13426 PAS domain TP45_13670 PF00072 Response regulator receiver domain TP45_13700 PF08212 Lipocalin-like domain TP45_13710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TP45_13710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TP45_13710 PF02770 Acyl-CoA dehydrogenase, middle domain TP45_13710 PF12806 Acetyl-CoA dehydrogenase C-terminal like TP45_13720 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TP45_13720 PF02779 Transketolase, pyrimidine binding domain TP45_13720 PF02780 Transketolase, C-terminal domain TP45_13740 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family TP45_13745 PF00753 Metallo-beta-lactamase superfamily TP45_13745 PF16123 Hydroxyacylglutathione hydrolase C-terminus TP45_13750 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TP45_13750 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TP45_13765 PF03808 Glycosyl transferase WecB/TagA/CpsF family TP45_13780 PF14667 Polysaccharide biosynthesis C-terminal domain TP45_13790 PF13439 Glycosyltransferase Family 4 TP45_13790 PF00534 Glycosyl transferases group 1 TP45_13810 PF02397 Bacterial sugar transferase TP45_13830 PF13411 MerR HTH family regulatory protein TP45_13835 PF00216 Bacterial DNA-binding protein TP45_13840 PF01588 Putative tRNA binding domain TP45_13840 PF03483 B3/4 domain TP45_13840 PF03484 tRNA synthetase B5 domain TP45_13840 PF03147 Ferredoxin-fold anticodon binding domain TP45_13840 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TP45_13845 PF01409 tRNA synthetases class II core domain (F) TP45_13845 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain TP45_13850 PF00453 Ribosomal protein L20 TP45_13855 PF01632 Ribosomal protein L35 TP45_13860 PF05198 Translation initiation factor IF-3, N-terminal domain TP45_13860 PF00707 Translation initiation factor IF-3, C-terminal domain TP45_13865 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TP45_13865 PF02824 TGS domain TP45_13865 PF03129 Anticodon binding domain TP45_13865 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TP45_13870 PF00356 Bacterial regulatory proteins, lacI family TP45_13900 PF01527 Transposase TP45_13905 PF13276 HTH-like domain TP45_13905 PF00665 Integrase core domain TP45_13905 PF13333 Integrase core domain TP45_13910 PF02534 Type IV secretory system Conjugative DNA transfer TP45_13925 PF17757 UvrB interaction domain TP45_13925 PF12344 Ultra-violet resistance protein B TP45_13925 PF04851 Type III restriction enzyme, res subunit TP45_13925 PF02151 UvrB/uvrC motif TP45_13925 PF00271 Helicase conserved C-terminal domain TP45_13930 PF07963 Prokaryotic N-terminal methylation motif TP45_13930 PF00114 Pilin (bacterial filament) TP45_13935 PF05598 Transposase domain (DUF772) TP45_13935 PF01609 Transposase DDE domain TP45_13940 PF13683 Integrase core domain TP45_13940 PF13276 HTH-like domain TP45_13945 PF01527 Transposase TP45_13960 PF05567 Neisseria PilC beta-propeller domain TP45_13980 PF07963 Prokaryotic N-terminal methylation motif TP45_13985 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases TP45_13985 PF03641 Possible lysine decarboxylase TP45_13985 PF11892 Domain of unknown function (DUF3412) TP45_13990 PF00593 TonB dependent receptor TP45_13995 PF01914 MarC family integral membrane protein TP45_14005 PF00462 Glutaredoxin TP45_14010 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain TP45_14010 PF02777 Iron/manganese superoxide dismutases, C-terminal domain TP45_14015 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain TP45_14015 PF02222 ATP-grasp domain TP45_14020 PF00731 AIR carboxylase TP45_14030 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain TP45_14030 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain TP45_14040 PF00013 KH domain TP45_14040 PF00575 S1 RNA binding domain TP45_14040 PF03725 3' exoribonuclease family, domain 2 TP45_14040 PF01138 3' exoribonuclease family, domain 1 TP45_14040 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TP45_14045 PF00312 Ribosomal protein S15 TP45_14050 PF09157 Pseudouridine synthase II TruB, C-terminal TP45_14050 PF16198 tRNA pseudouridylate synthase B C-terminal domain TP45_14050 PF01509 TruB family pseudouridylate synthase (N terminal domain) TP45_14055 PF02033 Ribosome-binding factor A TP45_14060 PF08364 Bacterial translation initiation factor IF-2 associated region TP45_14060 PF11987 Translation-initiation factor 2 TP45_14060 PF04760 Translation initiation factor IF-2, N-terminal region TP45_14060 PF00009 Elongation factor Tu GTP binding domain TP45_14065 PF13184 NusA-like KH domain TP45_14065 PF08529 NusA N-terminal domain TP45_14065 PF00575 S1 RNA binding domain TP45_14070 PF02576 RimP N-terminal domain TP45_14070 PF17384 RimP C-terminal SH3 domain TP45_14080 PF00361 Proton-conducting membrane transporter TP45_14085 PF00361 Proton-conducting membrane transporter TP45_14085 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus TP45_14090 PF00361 Proton-conducting membrane transporter TP45_14090 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TP45_14095 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TP45_14100 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TP45_14105 PF12838 4Fe-4S dicluster domain TP45_14110 PF00146 NADH dehydrogenase TP45_14115 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal TP45_14115 PF00384 Molybdopterin oxidoreductase TP45_14115 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TP45_14120 PF10531 SLBB domain TP45_14120 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TP45_14120 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TP45_14130 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TP45_14135 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit TP45_14140 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TP45_14145 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 TP45_14160 PF00121 Triosephosphate isomerase TP45_14165 PF00106 short chain dehydrogenase TP45_14170 PF01609 Transposase DDE domain TP45_14170 PF05598 Transposase domain (DUF772) TP45_14185 PF03707 Bacterial signalling protein N terminal repeat TP45_14185 PF00563 EAL domain TP45_14185 PF00990 Diguanylate cyclase, GGDEF domain TP45_14205 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TP45_14205 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TP45_14205 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TP45_14205 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TP45_14210 PF01039 Carboxyl transferase domain TP45_14210 PF17848 Acetyl-coA carboxylase zinc finger domain TP45_14215 PF00290 Tryptophan synthase alpha chain TP45_14225 PF00291 Pyridoxal-phosphate dependent enzyme TP45_14230 PF03466 LysR substrate binding domain TP45_14230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_14235 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TP45_14240 PF01416 tRNA pseudouridine synthase TP45_14260 PF01118 Semialdehyde dehydrogenase, NAD binding domain TP45_14260 PF02774 Semialdehyde dehydrogenase, dimerisation domain TP45_14270 PF01264 Chorismate synthase TP45_14275 PF05175 Methyltransferase small domain TP45_14280 PF02630 SCO1/SenC TP45_14285 PF02666 Phosphatidylserine decarboxylase TP45_14295 PF05872 Bacterial protein of unknown function (DUF853) TP45_14300 PF00293 NUDIX domain TP45_14315 PF03449 Transcription elongation factor, N-terminal TP45_14315 PF01272 Transcription elongation factor, GreA/GreB, C-term TP45_14320 PF00919 Uncharacterized protein family UPF0004 TP45_14320 PF18693 TRAM domain TP45_14320 PF04055 Radical SAM superfamily TP45_14325 PF01738 Dienelactone hydrolase family TP45_14345 PF00692 dUTPase TP45_14350 PF10609 NUBPL iron-transfer P-loop NTPase TP45_14355 PF07715 TonB-dependent Receptor Plug Domain TP45_14355 PF00593 TonB dependent receptor TP45_14370 PF05649 Peptidase family M13 TP45_14370 PF01431 Peptidase family M13 TP45_14375 PF01431 Peptidase family M13 TP45_14375 PF05649 Peptidase family M13 TP45_14395 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TP45_14395 PF07992 Pyridine nucleotide-disulphide oxidoreductase TP45_14400 PF01266 FAD dependent oxidoreductase TP45_14405 PF04235 Protein of unknown function (DUF418) TP45_14410 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TP45_14415 PF00877 NlpC/P60 family TP45_14420 PF00877 NlpC/P60 family TP45_14435 PF00375 Sodium:dicarboxylate symporter family TP45_14440 PF00245 Alkaline phosphatase TP45_14445 PF11734 TilS substrate C-terminal domain TP45_14445 PF09179 TilS substrate binding domain TP45_14445 PF01171 PP-loop family TP45_14450 PF02609 Exonuclease VII small subunit TP45_14455 PF00348 Polyprenyl synthetase TP45_14470 PF01523 Putative modulator of DNA gyrase TP45_14475 PF04751 Protein of unknown function (DUF615) TP45_14480 PF01523 Putative modulator of DNA gyrase TP45_14490 PF13116 Protein of unknown function TP45_14490 PF13502 AsmA-like C-terminal region TP45_14495 PF10150 Ribonuclease E/G family TP45_14495 PF00575 S1 RNA binding domain TP45_14500 PF02545 Maf-like protein TP45_14505 PF04402 Protein of unknown function (DUF541) TP45_14520 PF02590 Predicted SPOUT methyltransferase TP45_14535 PF01467 Cytidylyltransferase-like TP45_14550 PF13603 Leucyl-tRNA synthetase, Domain 2 TP45_14550 PF00133 tRNA synthetases class I (I, L, M and V) TP45_14550 PF08264 Anticodon-binding domain of tRNA TP45_14560 PF00085 Thioredoxin TP45_14595 PF04070 Domain of unknown function (DUF378) TP45_14600 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TP45_14610 PF03466 LysR substrate binding domain TP45_14610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_14640 PF00005 ABC transporter TP45_14640 PF00664 ABC transporter transmembrane region TP45_14665 PF00072 Response regulator receiver domain TP45_14665 PF00486 Transcriptional regulatory protein, C terminal TP45_14670 PF00512 His Kinase A (phospho-acceptor) domain TP45_14670 PF00672 HAMP domain TP45_14670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_14675 PF00999 Sodium/hydrogen exchanger family TP45_14680 PF00144 Beta-lactamase TP45_14685 PF03737 Aldolase/RraA TP45_14705 PF00990 Diguanylate cyclase, GGDEF domain TP45_14705 PF08448 PAS fold TP45_14710 PF01479 S4 domain TP45_14710 PF00849 RNA pseudouridylate synthase TP45_14715 PF08448 PAS fold TP45_14715 PF00990 Diguanylate cyclase, GGDEF domain TP45_14715 PF00563 EAL domain TP45_14720 PF00270 DEAD/DEAH box helicase TP45_14720 PF03880 DbpA RNA binding domain TP45_14720 PF00271 Helicase conserved C-terminal domain TP45_14765 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain TP45_14765 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain TP45_14775 PF00654 Voltage gated chloride channel TP45_14780 PF00107 Zinc-binding dehydrogenase TP45_14780 PF08240 Alcohol dehydrogenase GroES-like domain TP45_14800 PF00593 TonB dependent receptor TP45_14800 PF07715 TonB-dependent Receptor Plug Domain TP45_14820 PF00082 Subtilase family TP45_14820 PF01483 Proprotein convertase P-domain TP45_14830 PF00248 Aldo/keto reductase family TP45_14840 PF03466 LysR substrate binding domain TP45_14840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_14850 PF06719 AraC-type transcriptional regulator N-terminus TP45_14850 PF12833 Helix-turn-helix domain TP45_14860 PF00440 Bacterial regulatory proteins, tetR family TP45_14860 PF16859 Tetracyclin repressor-like, C-terminal domain TP45_14875 PF00665 Integrase core domain TP45_14875 PF13333 Integrase core domain TP45_14875 PF13276 HTH-like domain TP45_14880 PF01527 Transposase TP45_14885 PF00873 AcrB/AcrD/AcrF family TP45_14895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TP45_14895 PF00529 HlyD membrane-fusion protein of T1SS TP45_14905 PF01475 Ferric uptake regulator family TP45_14910 PF00749 tRNA synthetases class I (E and Q), catalytic domain TP45_14935 PF06123 Inner membrane protein CreD TP45_14950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_14950 PF00672 HAMP domain TP45_14950 PF00512 His Kinase A (phospho-acceptor) domain TP45_14955 PF00072 Response regulator receiver domain TP45_14955 PF00486 Transcriptional regulatory protein, C terminal TP45_14960 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ TP45_14975 PF02559 CarD-like/TRCF domain TP45_14975 PF03461 TRCF domain TP45_14975 PF17757 UvrB interaction domain TP45_14975 PF00271 Helicase conserved C-terminal domain TP45_14975 PF00270 DEAD/DEAH box helicase TP45_14985 PF01584 CheW-like domain TP45_14985 PF09078 CheY binding TP45_14985 PF02895 Signal transducing histidine kinase, homodimeric domain TP45_14985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_14985 PF01627 Hpt domain TP45_14990 PF02203 Tar ligand binding domain homologue TP45_14990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_14990 PF00672 HAMP domain TP45_14995 PF01584 CheW-like domain TP45_15000 PF00563 EAL domain TP45_15000 PF00990 Diguanylate cyclase, GGDEF domain TP45_15000 PF13426 PAS domain TP45_15005 PF01739 CheR methyltransferase, SAM binding domain TP45_15005 PF03705 CheR methyltransferase, all-alpha domain TP45_15010 PF01339 CheB methylesterase TP45_15010 PF00072 Response regulator receiver domain TP45_15015 PF13091 PLD-like domain TP45_15020 PF01431 Peptidase family M13 TP45_15020 PF05649 Peptidase family M13 TP45_15030 PF00300 Histidine phosphatase superfamily (branch 1) TP45_15035 PF04493 Endonuclease V TP45_15045 PF02678 Pirin TP45_15045 PF05726 Pirin C-terminal cupin domain TP45_15060 PF05726 Pirin C-terminal cupin domain TP45_15060 PF02678 Pirin TP45_15065 PF02554 Carbon starvation protein CstA TP45_15065 PF13722 5TM C-terminal transporter carbon starvation CstA TP45_15070 PF04328 Selenoprotein, putative TP45_15085 PF12796 Ankyrin repeats (3 copies) TP45_15120 PF13478 XdhC Rossmann domain TP45_15120 PF02625 XdhC and CoxI family TP45_15125 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain TP45_15125 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TP45_15130 PF03450 CO dehydrogenase flavoprotein C-terminal domain TP45_15130 PF00941 FAD binding domain in molybdopterin dehydrogenase TP45_15135 PF01799 [2Fe-2S] binding domain TP45_15135 PF10518 TAT (twin-arginine translocation) pathway signal sequence TP45_15135 PF00111 2Fe-2S iron-sulfur cluster binding domain TP45_15140 PF08240 Alcohol dehydrogenase GroES-like domain TP45_15140 PF00107 Zinc-binding dehydrogenase TP45_15140 PF00698 Acyl transferase domain TP45_15140 PF16197 Ketoacyl-synthetase C-terminal extension TP45_15140 PF00550 Phosphopantetheine attachment site TP45_15140 PF00109 Beta-ketoacyl synthase, N-terminal domain TP45_15140 PF14765 Polyketide synthase dehydratase TP45_15140 PF08659 KR domain TP45_15140 PF02801 Beta-ketoacyl synthase, C-terminal domain TP45_15145 PF00360 Phytochrome region TP45_15145 PF00990 Diguanylate cyclase, GGDEF domain TP45_15145 PF01590 GAF domain TP45_15145 PF00563 EAL domain TP45_15150 PF00436 Single-strand binding protein family TP45_15155 PF00348 Polyprenyl synthetase TP45_15165 PF08245 Mur ligase middle domain TP45_15165 PF02875 Mur ligase family, glutamate ligase domain TP45_15180 PF01842 ACT domain TP45_15180 PF00696 Amino acid kinase family TP45_15185 PF02567 Phenazine biosynthesis-like protein TP45_15190 PF02567 Phenazine biosynthesis-like protein TP45_15200 PF02566 OsmC-like protein TP45_15205 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TP45_15205 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TP45_15210 PF03652 Holliday junction resolvase TP45_15215 PF02622 Uncharacterized ACR, COG1678 TP45_15225 PF00958 GMP synthase C terminal domain TP45_15225 PF13673 Acetyltransferase (GNAT) domain TP45_15225 PF13302 Acetyltransferase (GNAT) domain TP45_15225 PF03352 Methyladenine glycosylase TP45_15225 PF00117 Glutamine amidotransferase class-I TP45_15240 PF00437 Type II/IV secretion system protein TP45_15245 PF00437 Type II/IV secretion system protein TP45_15250 PF01168 Alanine racemase, N-terminal domain TP45_15255 PF03807 NADP oxidoreductase coenzyme F420-dependent TP45_15255 PF14748 Pyrroline-5-carboxylate reductase dimerisation TP45_15265 PF01551 Peptidase family M23 TP45_15285 PF01965 DJ-1/PfpI family TP45_15295 PF02082 Transcriptional regulator TP45_15300 PF01458 Uncharacterized protein family (UPF0051) TP45_15305 PF00005 ABC transporter TP45_15310 PF01458 Uncharacterized protein family (UPF0051) TP45_15315 PF00266 Aminotransferase class-V TP45_15325 PF00355 Rieske [2Fe-2S] domain TP45_15330 PF00593 TonB dependent receptor TP45_15330 PF07715 TonB-dependent Receptor Plug Domain TP45_15335 PF18331 PKHD-type hydroxylase C-terminal domain TP45_15335 PF13640 2OG-Fe(II) oxygenase superfamily TP45_15360 PF02424 ApbE family TP45_15365 PF00175 Oxidoreductase NAD-binding domain TP45_15365 PF00667 FAD binding domain TP45_15365 PF00258 Flavodoxin TP45_15390 PF01636 Phosphotransferase enzyme family TP45_15395 PF00483 Nucleotidyl transferase TP45_15400 PF00308 Bacterial dnaA protein TP45_15405 PF01594 AI-2E family transporter TP45_15415 PF02769 AIR synthase related protein, C-terminal domain TP45_15415 PF00586 AIR synthase related protein, N-terminal domain TP45_15425 PF00551 Formyl transferase TP45_15445 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TP45_15450 PF01722 BolA-like protein TP45_15455 PF01380 SIS domain TP45_15455 PF00571 CBS domain TP45_15470 PF03968 OstA-like protein TP45_15475 PF00005 ABC transporter TP45_15480 PF00309 Sigma-54 factor, Activator interacting domain (AID) TP45_15480 PF04963 Sigma-54 factor, core binding domain TP45_15480 PF04552 Sigma-54, DNA binding domain TP45_15485 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein TP45_15490 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TP45_15495 PF02603 HPr Serine kinase N terminus TP45_15495 PF07475 HPr Serine kinase C-terminal domain TP45_15500 PF03668 P-loop ATPase protein family TP45_15510 PF00381 PTS HPr component phosphorylation site TP45_15515 PF05524 PEP-utilising enzyme, N-terminal TP45_15515 PF00391 PEP-utilising enzyme, mobile domain TP45_15515 PF02896 PEP-utilising enzyme, TIM barrel domain TP45_15520 PF00571 CBS domain TP45_15520 PF01769 Divalent cation transporter TP45_15520 PF03448 MgtE intracellular N domain TP45_15525 PF00756 Putative esterase TP45_15530 PF02322 Cytochrome bd terminal oxidase subunit II TP45_15535 PF01654 Cytochrome bd terminal oxidase subunit I TP45_15545 PF00324 Amino acid permease TP45_15550 PF00544 Pectate lyase TP45_15555 PF00561 alpha/beta hydrolase fold TP45_15565 PF00196 Bacterial regulatory proteins, luxR family TP45_15570 PF00324 Amino acid permease TP45_15605 PF12706 Beta-lactamase superfamily domain TP45_15610 PF04820 Tryptophan halogenase TP45_15640 PF00376 MerR family regulatory protein TP45_15640 PF09278 MerR, DNA binding TP45_15645 PF07690 Major Facilitator Superfamily TP45_15655 PF03738 Glutathionylspermidine synthase preATP-grasp TP45_15680 PF04012 PspA/IM30 family TP45_15690 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region TP45_15690 PF01243 Pyridoxamine 5'-phosphate oxidase TP45_15695 PF01202 Shikimate kinase TP45_15700 PF01761 3-dehydroquinate synthase TP45_15710 PF01208 Uroporphyrinogen decarboxylase (URO-D) TP45_15715 PF07690 Major Facilitator Superfamily TP45_15720 PF01627 Hpt domain TP45_15720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_15720 PF00072 Response regulator receiver domain TP45_15720 PF17149 Periplasmic sensor domain found in signal transduction proteins TP45_15720 PF00672 HAMP domain TP45_15720 PF00512 His Kinase A (phospho-acceptor) domain TP45_15730 PF13333 Integrase core domain TP45_15730 PF13276 HTH-like domain TP45_15730 PF00665 Integrase core domain TP45_15735 PF01527 Transposase TP45_15750 PF00072 Response regulator receiver domain TP45_15750 PF01627 Hpt domain TP45_15750 PF00512 His Kinase A (phospho-acceptor) domain TP45_15750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_15755 PF04264 YceI-like domain TP45_15775 PF03313 Serine dehydratase alpha chain TP45_15775 PF03315 Serine dehydratase beta chain TP45_15780 PF12697 Alpha/beta hydrolase family TP45_15790 PF00696 Amino acid kinase family TP45_15790 PF00742 Homoserine dehydrogenase TP45_15790 PF03447 Homoserine dehydrogenase, NAD binding domain TP45_15795 PF01053 Cys/Met metabolism PLP-dependent enzyme TP45_15800 PF00561 alpha/beta hydrolase fold TP45_15805 PF01551 Peptidase family M23 TP45_15805 PF01476 LysM domain TP45_15805 PF08525 Opacity-associated protein A N-terminal motif TP45_15810 PF16658 Class II release factor RF3, C-terminal domain TP45_15810 PF00009 Elongation factor Tu GTP binding domain TP45_15815 PF03006 Haemolysin-III related TP45_15820 PF05170 AsmA family TP45_15825 PF00478 IMP dehydrogenase / GMP reductase domain TP45_15825 PF00571 CBS domain TP45_15830 PF00535 Glycosyl transferase family 2 TP45_15835 PF00912 Transglycosylase TP45_15840 PF01430 Hsp33 protein TP45_15850 PF07715 TonB-dependent Receptor Plug Domain TP45_15850 PF00593 TonB dependent receptor TP45_15855 PF00440 Bacterial regulatory proteins, tetR family TP45_15860 PF00561 alpha/beta hydrolase fold TP45_15865 PF09317 Domain of unknown function (DUF1974) TP45_15865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TP45_15865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TP45_15895 PF01597 Glycine cleavage H-protein TP45_15900 PF08669 Glycine cleavage T-protein C-terminal barrel domain TP45_15900 PF01571 Aminomethyltransferase folate-binding domain TP45_15910 PF02694 Uncharacterised BCR, YnfA/UPF0060 family TP45_15915 PF03819 MazG nucleotide pyrophosphohydrolase domain TP45_15920 PF00459 Inositol monophosphatase family TP45_15925 PF00293 NUDIX domain TP45_15930 PF00202 Aminotransferase class-III TP45_15935 PF04452 RNA methyltransferase TP45_15940 PF02685 Glucokinase TP45_15955 PF00704 Glycosyl hydrolases family 18 TP45_15955 PF01476 LysM domain TP45_15960 PF07691 PA14 domain TP45_15960 PF00728 Glycosyl hydrolase family 20, catalytic domain TP45_15960 PF02838 Glycosyl hydrolase family 20, domain 2 TP45_15970 PF01915 Glycosyl hydrolase family 3 C-terminal domain TP45_15970 PF00933 Glycosyl hydrolase family 3 N terminal domain TP45_15970 PF14310 Fibronectin type III-like domain TP45_15970 PF07691 PA14 domain TP45_15990 PF11975 Family 4 glycosyl hydrolase C-terminal domain TP45_15990 PF02056 Family 4 glycosyl hydrolase TP45_16000 PF17678 Glycosyl hydrolase family 92 N-terminal domain TP45_16000 PF07971 Glycosyl hydrolase family 92 TP45_16005 PF01301 Glycosyl hydrolases family 35 TP45_16035 PF03932 CutC family TP45_16040 PF01112 Asparaginase TP45_16055 PF13302 Acetyltransferase (GNAT) domain TP45_16070 PF01627 Hpt domain TP45_16070 PF00072 Response regulator receiver domain TP45_16070 PF01584 CheW-like domain TP45_16070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_16075 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term TP45_16075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_16080 PF01584 CheW-like domain TP45_16085 PF00072 Response regulator receiver domain TP45_16090 PF00072 Response regulator receiver domain TP45_16095 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain TP45_16095 PF02951 Prokaryotic glutathione synthetase, N-terminal domain TP45_16110 PF00814 Glycoprotease family TP45_16115 PF13307 Helicase C-terminal domain TP45_16115 PF04851 Type III restriction enzyme, res subunit TP45_16125 PF14814 Bifunctional transglycosylase second domain TP45_16125 PF00912 Transglycosylase TP45_16125 PF00905 Penicillin binding protein transpeptidase domain TP45_16130 PF00535 Glycosyl transferase family 2 TP45_16130 PF01501 Glycosyl transferase family 8 TP45_16140 PF13291 ACT domain TP45_16140 PF02824 TGS domain TP45_16140 PF04607 Region found in RelA / SpoT proteins TP45_16145 PF12706 Beta-lactamase superfamily domain TP45_16150 PF03070 TENA/THI-4/PQQC family TP45_16155 PF05402 Coenzyme PQQ synthesis protein D (PqqD) TP45_16160 PF04055 Radical SAM superfamily TP45_16160 PF13186 Iron-sulfur cluster-binding domain TP45_16175 PF02685 Glucokinase TP45_16185 PF04408 Helicase associated domain (HA2) TP45_16185 PF11898 Domain of unknown function (DUF3418) TP45_16185 PF00271 Helicase conserved C-terminal domain TP45_16185 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold TP45_16185 PF00270 DEAD/DEAH box helicase TP45_16190 PF00210 Ferritin-like domain TP45_16195 PF00270 DEAD/DEAH box helicase TP45_16195 PF16124 RecQ zinc-binding TP45_16195 PF00570 HRDC domain TP45_16195 PF09382 RQC domain TP45_16195 PF00271 Helicase conserved C-terminal domain TP45_16230 PF02203 Tar ligand binding domain homologue TP45_16230 PF00672 HAMP domain TP45_16230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_16250 PF13581 Histidine kinase-like ATPase domain TP45_16250 PF07536 HWE histidine kinase TP45_16250 PF13426 PAS domain TP45_16255 PF06508 Queuosine biosynthesis protein QueC TP45_16265 PF04055 Radical SAM superfamily TP45_16275 PF00691 OmpA family TP45_16280 PF04052 TolB amino-terminal domain TP45_16280 PF07676 WD40-like Beta Propeller Repeat TP45_16290 PF02472 Biopolymer transport protein ExbD/TolR TP45_16295 PF01618 MotA/TolQ/ExbB proton channel family TP45_16300 PF03061 Thioesterase superfamily TP45_16305 PF17864 RuvB AAA lid domain TP45_16305 PF05496 Holliday junction DNA helicase RuvB P-loop domain TP45_16305 PF05491 RuvB C-terminal winged helix domain TP45_16310 PF02705 K+ potassium transporter TP45_16315 PF07499 RuvA, C-terminal domain TP45_16315 PF01330 RuvA N terminal domain TP45_16320 PF02075 Crossover junction endodeoxyribonuclease RuvC TP45_16325 PF01709 Transcriptional regulator TP45_16340 PF01336 OB-fold nucleic acid binding domain TP45_16340 PF00152 tRNA synthetases class II (D, K and N) TP45_16340 PF02938 GAD domain TP45_16355 PF07690 Major Facilitator Superfamily TP45_16365 PF05506 Domain of unknown function (DUF756) TP45_16365 PF04185 Phosphoesterase family TP45_16390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_16390 PF03466 LysR substrate binding domain TP45_16400 PF12848 ABC transporter TP45_16400 PF00005 ABC transporter TP45_16405 PF07715 TonB-dependent Receptor Plug Domain TP45_16405 PF00593 TonB dependent receptor TP45_16415 PF00593 TonB dependent receptor TP45_16415 PF07715 TonB-dependent Receptor Plug Domain TP45_16420 PF07715 TonB-dependent Receptor Plug Domain TP45_16420 PF00593 TonB dependent receptor TP45_16425 PF00067 Cytochrome P450 TP45_16430 PF02254 TrkA-N domain TP45_16430 PF00999 Sodium/hydrogen exchanger family TP45_16440 PF07715 TonB-dependent Receptor Plug Domain TP45_16440 PF00593 TonB dependent receptor TP45_16440 PF07660 Secretin and TonB N terminus short domain TP45_16450 PF04183 IucA / IucC family TP45_16450 PF06276 Ferric iron reductase FhuF-like transporter TP45_16455 PF07690 Major Facilitator Superfamily TP45_16465 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TP45_16465 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TP45_16485 PF01527 Transposase TP45_16490 PF13333 Integrase core domain TP45_16490 PF00665 Integrase core domain TP45_16490 PF13276 HTH-like domain TP45_16500 PF02654 Cobalamin-5-phosphate synthase TP45_16510 PF02277 Phosphoribosyltransferase TP45_16515 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase TP45_16520 PF07685 CobB/CobQ-like glutamine amidotransferase domain TP45_16520 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TP45_16525 PF00155 Aminotransferase class I and II TP45_16530 PF17113 Regulatory signalling modulator protein AmpE TP45_16530 PF03186 CobD/Cbib protein TP45_16535 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TP45_16535 PF12557 Cob(I)alamin adenosyltransferase N terminal TP45_16555 PF07715 TonB-dependent Receptor Plug Domain TP45_16555 PF00593 TonB dependent receptor TP45_16565 PF10431 C-terminal, D2-small domain, of ClpB protein TP45_16565 PF00004 ATPase family associated with various cellular activities (AAA) TP45_16565 PF07724 AAA domain (Cdc48 subfamily) TP45_16565 PF02861 Clp amino terminal domain, pathogenicity island component TP45_16565 PF17871 AAA lid domain TP45_16575 PF00005 ABC transporter TP45_16580 PF00528 Binding-protein-dependent transport system inner membrane component TP45_16590 PF00248 Aldo/keto reductase family TP45_16605 PF07715 TonB-dependent Receptor Plug Domain TP45_16605 PF00593 TonB dependent receptor TP45_16610 PF01541 GIY-YIG catalytic domain TP45_16645 PF07715 TonB-dependent Receptor Plug Domain TP45_16645 PF00593 TonB dependent receptor TP45_16650 PF02358 Trehalose-phosphatase TP45_16655 PF00723 Glycosyl hydrolases family 15 TP45_16660 PF00982 Glycosyltransferase family 20 TP45_16665 PF01011 PQQ enzyme repeat TP45_16670 PF00672 HAMP domain TP45_16670 PF02203 Tar ligand binding domain homologue TP45_16670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_16675 PF04134 Protein of unknown function, DUF393 TP45_16690 PF00849 RNA pseudouridylate synthase TP45_16695 PF13525 Outer membrane lipoprotein TP45_16705 PF00795 Carbon-nitrogen hydrolase TP45_16705 PF02540 NAD synthase TP45_16715 PF02629 CoA binding domain TP45_16715 PF00549 CoA-ligase TP45_16720 PF08442 ATP-grasp domain TP45_16720 PF00549 CoA-ligase TP45_16725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_16725 PF00512 His Kinase A (phospho-acceptor) domain TP45_16730 PF02954 Bacterial regulatory protein, Fis family TP45_16730 PF00158 Sigma-54 interaction domain TP45_16730 PF00072 Response regulator receiver domain TP45_16735 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain TP45_16735 PF00437 Type II/IV secretion system protein TP45_16740 PF00114 Pilin (bacterial filament) TP45_16740 PF07963 Prokaryotic N-terminal methylation motif TP45_16750 PF00482 Type II secretion system (T2SS), protein F TP45_16755 PF06750 Bacterial Peptidase A24 N-terminal domain TP45_16755 PF01478 Type IV leader peptidase family TP45_16760 PF01121 Dephospho-CoA kinase TP45_16765 PF05598 Transposase domain (DUF772) TP45_16765 PF01609 Transposase DDE domain TP45_16770 PF13683 Integrase core domain TP45_16770 PF13276 HTH-like domain TP45_16775 PF01527 Transposase TP45_16785 PF00512 His Kinase A (phospho-acceptor) domain TP45_16785 PF00989 PAS fold TP45_16785 PF11808 Phosphate regulon sensor protein PhoR TP45_16785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_16790 PF00486 Transcriptional regulatory protein, C terminal TP45_16790 PF00072 Response regulator receiver domain TP45_16800 PF08443 RimK-like ATP-grasp domain TP45_16800 PF18030 RimK PreATP-grasp domain TP45_16805 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TP45_16805 PF00128 Alpha amylase, catalytic domain TP45_16840 PF13683 Integrase core domain TP45_16840 PF13276 HTH-like domain TP45_16845 PF01527 Transposase TP45_16860 PF03797 Autotransporter beta-domain TP45_16860 PF00657 GDSL-like Lipase/Acylhydrolase TP45_16870 PF05690 Thiazole biosynthesis protein ThiG TP45_16875 PF02390 Putative methyltransferase TP45_16880 PF02080 TrkA-C domain TP45_16880 PF03600 Citrate transporter TP45_16900 PF01557 Fumarylacetoacetate (FAA) hydrolase family TP45_16905 PF01741 Large-conductance mechanosensitive channel, MscL TP45_16920 PF00356 Bacterial regulatory proteins, lacI family TP45_16930 PF00703 Glycosyl hydrolases family 2 TP45_16930 PF02837 Glycosyl hydrolases family 2, sugar binding domain TP45_16930 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain TP45_16935 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation TP45_16935 PF14508 Glycosyl-hydrolase 97 N-terminal TP45_16935 PF10566 Glycoside hydrolase 97 TP45_16945 PF00135 Carboxylesterase family TP45_16950 PF00588 SpoU rRNA Methylase family TP45_16950 PF08032 RNA 2'-O ribose methyltransferase substrate binding TP45_16960 PF01433 Peptidase family M1 domain TP45_16960 PF11838 ERAP1-like C-terminal domain TP45_16985 PF01527 Transposase TP45_16990 PF13276 HTH-like domain TP45_16990 PF13683 Integrase core domain TP45_17005 PF13276 HTH-like domain TP45_17005 PF00665 Integrase core domain TP45_17005 PF13333 Integrase core domain TP45_17010 PF01527 Transposase TP45_17020 PF01609 Transposase DDE domain TP45_17020 PF05598 Transposase domain (DUF772) TP45_17025 PF13683 Integrase core domain TP45_17025 PF13276 HTH-like domain TP45_17030 PF01527 Transposase TP45_17045 PF00873 AcrB/AcrD/AcrF family TP45_17050 PF00529 HlyD membrane-fusion protein of T1SS TP45_17050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TP45_17055 PF00009 Elongation factor Tu GTP binding domain TP45_17060 PF01507 Phosphoadenosine phosphosulfate reductase family TP45_17065 PF00667 FAD binding domain TP45_17065 PF00258 Flavodoxin TP45_17065 PF00175 Oxidoreductase NAD-binding domain TP45_17070 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TP45_17070 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TP45_17075 PF01507 Phosphoadenosine phosphosulfate reductase family TP45_17095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_17095 PF00512 His Kinase A (phospho-acceptor) domain TP45_17095 PF01627 Hpt domain TP45_17095 PF00072 Response regulator receiver domain TP45_17105 PF03466 LysR substrate binding domain TP45_17105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_17110 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TP45_17110 PF10414 Sirohaem synthase dimerisation region TP45_17110 PF14824 Sirohaem biosynthesis protein central TP45_17115 PF00291 Pyridoxal-phosphate dependent enzyme TP45_17130 PF00274 Fructose-bisphosphate aldolase class-I TP45_17135 PF00224 Pyruvate kinase, barrel domain TP45_17135 PF02887 Pyruvate kinase, alpha/beta domain TP45_17145 PF00162 Phosphoglycerate kinase TP45_17165 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TP45_17165 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TP45_17175 PF03922 OmpW family TP45_17190 PF00753 Metallo-beta-lactamase superfamily TP45_17190 PF04273 Putative phosphatase (DUF442) TP45_17200 PF00528 Binding-protein-dependent transport system inner membrane component TP45_17205 PF03459 TOBE domain TP45_17205 PF00005 ABC transporter TP45_17240 PF03734 L,D-transpeptidase catalytic domain TP45_17240 PF01476 LysM domain TP45_17245 PF04225 Opacity-associated protein A LysM-like domain TP45_17245 PF01551 Peptidase family M23 TP45_17250 PF07715 TonB-dependent Receptor Plug Domain TP45_17250 PF00593 TonB dependent receptor TP45_17270 PF01527 Transposase TP45_17275 PF13333 Integrase core domain TP45_17275 PF00665 Integrase core domain TP45_17275 PF13276 HTH-like domain TP45_17285 PF05598 Transposase domain (DUF772) TP45_17285 PF01609 Transposase DDE domain TP45_17290 PF05598 Transposase domain (DUF772) TP45_17290 PF01609 Transposase DDE domain TP45_17295 PF00456 Transketolase, thiamine diphosphate binding domain TP45_17295 PF02780 Transketolase, C-terminal domain TP45_17295 PF02779 Transketolase, pyrimidine binding domain TP45_17310 PF00092 von Willebrand factor type A domain TP45_17310 PF07584 Aerotolerance regulator N-terminal TP45_17330 PF17863 AAA lid domain TP45_17330 PF07726 ATPase family associated with various cellular activities (AAA) TP45_17335 PF07660 Secretin and TonB N terminus short domain TP45_17335 PF03958 Bacterial type II/III secretion system short domain TP45_17335 PF00263 Bacterial type II and III secretion system protein TP45_17335 PF11741 AMIN domain TP45_17360 PF00905 Penicillin binding protein transpeptidase domain TP45_17360 PF00912 Transglycosylase TP45_17360 PF17092 Penicillin-binding protein OB-like domain TP45_17370 PF00285 Citrate synthase, C-terminal domain TP45_17375 PF01197 Ribosomal protein L31 TP45_17380 PF01156 Inosine-uridine preferring nucleoside hydrolase TP45_17385 PF17191 RecG wedge domain TP45_17385 PF00271 Helicase conserved C-terminal domain TP45_17385 PF00270 DEAD/DEAH box helicase TP45_17390 PF01042 Endoribonuclease L-PSP TP45_17395 PF08666 SAF domain TP45_17395 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus TP45_17400 PF03573 outer membrane porin, OprD family TP45_17405 PF13378 Enolase C-terminal domain-like TP45_17405 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TP45_17410 PF07690 Major Facilitator Superfamily TP45_17415 PF00171 Aldehyde dehydrogenase family TP45_17420 PF00701 Dihydrodipicolinate synthetase family TP45_17425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_17425 PF03466 LysR substrate binding domain TP45_17430 PF13291 ACT domain TP45_17430 PF02824 TGS domain TP45_17430 PF04607 Region found in RelA / SpoT proteins TP45_17435 PF01192 RNA polymerase Rpb6 TP45_17440 PF00625 Guanylate kinase TP45_17445 PF03755 YicC-like family, N-terminal region TP45_17445 PF08340 Domain of unknown function (DUF1732) TP45_17450 PF01138 3' exoribonuclease family, domain 1 TP45_17450 PF03725 3' exoribonuclease family, domain 2 TP45_17460 PF01725 Ham1 family TP45_17465 PF06969 HemN C-terminal domain TP45_17465 PF04055 Radical SAM superfamily TP45_17480 PF00557 Metallopeptidase family M24 TP45_17485 PF05195 Aminopeptidase P, N-terminal domain TP45_17485 PF00557 Metallopeptidase family M24 TP45_17490 PF03695 Uncharacterised protein family (UPF0149) TP45_17500 PF05164 Cell division protein ZapA TP45_17505 PF01812 5-formyltetrahydrofolate cyclo-ligase family TP45_17515 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) TP45_17525 PF13369 Transglutaminase-like superfamily TP45_17530 PF00301 Rubredoxin TP45_17535 PF02581 Thiamine monophosphate synthase TP45_17545 PF00202 Aminotransferase class-III TP45_17550 PF00196 Bacterial regulatory proteins, luxR family TP45_17550 PF17874 MalT-like TPR region TP45_17555 PF00127 Copper binding proteins, plastocyanin/azurin family TP45_17560 PF00155 Aminotransferase class I and II TP45_17570 PF00034 Cytochrome c TP45_17570 PF13442 Cytochrome C oxidase, cbb3-type, subunit III TP45_17575 PF01593 Flavin containing amine oxidoreductase TP45_17590 PF00202 Aminotransferase class-III TP45_17595 PF00027 Cyclic nucleotide-binding domain TP45_17595 PF00520 Ion transport protein TP45_17610 PF01569 PAP2 superfamily TP45_17615 PF01062 Bestrophin, RFP-TM, chloride channel TP45_17625 PF02875 Mur ligase family, glutamate ligase domain TP45_17625 PF08245 Mur ligase middle domain TP45_17625 PF01225 Mur ligase family, catalytic domain TP45_17635 PF00365 Phosphofructokinase TP45_17645 PF03030 Inorganic H+ pyrophosphatase TP45_17655 PF00719 Inorganic pyrophosphatase TP45_17665 PF00593 TonB dependent receptor TP45_17665 PF07715 TonB-dependent Receptor Plug Domain TP45_17670 PF12833 Helix-turn-helix domain TP45_17675 PF00486 Transcriptional regulatory protein, C terminal TP45_17675 PF18500 CadC C-terminal domain 1 TP45_17680 PF13667 ThiC-associated domain TP45_17680 PF01964 Radical SAM ThiC family TP45_17685 PF07715 TonB-dependent Receptor Plug Domain TP45_17685 PF00593 TonB dependent receptor TP45_17690 PF02203 Tar ligand binding domain homologue TP45_17690 PF00672 HAMP domain TP45_17690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain TP45_17700 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain TP45_17700 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain TP45_17705 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TP45_17705 PF00205 Thiamine pyrophosphate enzyme, central domain TP45_17705 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TP45_17715 PF00291 Pyridoxal-phosphate dependent enzyme TP45_17720 PF08502 LeuA allosteric (dimerisation) domain TP45_17720 PF00682 HMGL-like TP45_17725 PF00180 Isocitrate/isopropylmalate dehydrogenase TP45_17730 PF00694 Aconitase C-terminal domain TP45_17735 PF00330 Aconitase family (aconitate hydratase) TP45_17740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_17745 PF17151 Periplasmic sensor domain TP45_17745 PF00990 Diguanylate cyclase, GGDEF domain TP45_17760 PF02321 Outer membrane efflux protein TP45_17765 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) TP45_17770 PF03279 Bacterial lipid A biosynthesis acyltransferase TP45_17805 PF01527 Transposase TP45_17810 PF13276 HTH-like domain TP45_17810 PF13683 Integrase core domain TP45_17830 PF13276 HTH-like domain TP45_17830 PF13683 Integrase core domain TP45_17835 PF01527 Transposase TP45_17840 PF01609 Transposase DDE domain TP45_17840 PF05598 Transposase domain (DUF772) TP45_17845 PF00155 Aminotransferase class I and II TP45_17860 PF01522 Polysaccharide deacetylase TP45_17865 PF00462 Glutaredoxin TP45_17880 PF01979 Amidohydrolase family TP45_17885 PF01979 Amidohydrolase family TP45_17905 PF02645 Uncharacterised protein, DegV family COG1307 TP45_17910 PF01327 Polypeptide deformylase TP45_17920 PF03960 ArsC family TP45_17935 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) TP45_17940 PF01270 Glycosyl hydrolases family 8 TP45_17945 PF03170 Bacterial cellulose synthase subunit TP45_17950 PF03552 Cellulose synthase TP45_17950 PF07238 PilZ domain TP45_17950 PF00535 Glycosyl transferase family 2 TP45_17965 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family TP45_17965 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain TP45_18005 PF00593 TonB dependent receptor TP45_18005 PF07715 TonB-dependent Receptor Plug Domain TP45_18015 PF07702 UTRA domain TP45_18015 PF00392 Bacterial regulatory proteins, gntR family TP45_18025 PF03958 Bacterial type II/III secretion system short domain TP45_18025 PF00263 Bacterial type II and III secretion system protein TP45_18035 PF10741 Type II secretion system (T2SS), protein M subtype b TP45_18040 PF05137 Fimbrial assembly protein (PilN) TP45_18045 PF03934 Type II secretion system (T2SS), protein K TP45_18055 PF07963 Prokaryotic N-terminal methylation motif TP45_18060 PF12019 Type II transport protein GspH TP45_18065 PF08334 Type II secretion system (T2SS), protein G TP45_18070 PF00482 Type II secretion system (T2SS), protein F TP45_18075 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain TP45_18075 PF00437 Type II/IV secretion system protein TP45_18080 PF04151 Bacterial pre-peptidase C-terminal domain TP45_18080 PF00082 Subtilase family TP45_18090 PF01609 Transposase DDE domain TP45_18090 PF05598 Transposase domain (DUF772) TP45_18105 PF02769 AIR synthase related protein, C-terminal domain TP45_18105 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal TP45_18105 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TP45_18110 PF10411 Disulfide bond isomerase protein N-terminus TP45_18110 PF13098 Thioredoxin-like domain TP45_18115 PF02899 Phage integrase, N-terminal SAM-like domain TP45_18115 PF00589 Phage integrase family TP45_18130 PF03739 Lipopolysaccharide export system permease LptF/LptG TP45_18140 PF00883 Cytosol aminopeptidase family, catalytic domain TP45_18140 PF02789 Cytosol aminopeptidase family, N-terminal domain TP45_18155 PF00133 tRNA synthetases class I (I, L, M and V) TP45_18155 PF10458 Valyl tRNA synthetase tRNA binding arm TP45_18155 PF08264 Anticodon-binding domain of tRNA TP45_18160 PF00593 TonB dependent receptor TP45_18160 PF07715 TonB-dependent Receptor Plug Domain TP45_18165 PF01464 Transglycosylase SLT domain TP45_18185 PF01066 CDP-alcohol phosphatidyltransferase TP45_18195 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TP45_18195 PF03129 Anticodon binding domain TP45_18195 PF04073 Aminoacyl-tRNA editing domain TP45_18220 PF01555 DNA methylase TP45_18235 PF12728 Helix-turn-helix domain TP45_18240 PF06067 Domain of unknown function (DUF932) TP45_18250 PF05284 Protein of unknown function (DUF736) TP45_18280 PF13614 AAA domain TP45_18305 PF03466 LysR substrate binding domain TP45_18305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_18310 PF07690 Major Facilitator Superfamily TP45_18315 PF07690 Major Facilitator Superfamily TP45_18330 PF03466 LysR substrate binding domain TP45_18330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_18335 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TP45_18335 PF07992 Pyridine nucleotide-disulphide oxidoreductase TP45_18340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_18340 PF03466 LysR substrate binding domain TP45_18350 PF02534 Type IV secretory system Conjugative DNA transfer TP45_18360 PF00437 Type II/IV secretion system protein TP45_18365 PF04956 TrbC/VIRB2 family TP45_18375 PF03135 CagE, TrbE, VirB family, component of type IV transporter system TP45_18405 PF03743 Bacterial conjugation TrbI-like protein TP45_18415 PF01588 Putative tRNA binding domain TP45_18415 PF09334 tRNA synthetases class I (M) TP45_18445 PF04545 Sigma-70, region 4 TP45_18445 PF04542 Sigma-70 region 2 TP45_18490 PF01042 Endoribonuclease L-PSP TP45_18500 PF03706 Lysylphosphatidylglycerol synthase TM region TP45_18500 PF09924 Uncharacterised conserved protein (DUF2156) TP45_18535 PF07690 Major Facilitator Superfamily TP45_18540 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TP45_18545 PF08274 PhnA Zinc-Ribbon TP45_18545 PF03831 PhnA domain TP45_18555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TP45_18580 PF01258 Prokaryotic dksA/traR C4-type zinc finger TP45_18590 PF07043 Protein of unknown function (DUF1328) TP45_18595 PF01863 Protein of unknown function DUF45 TP45_18600 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TP45_18600 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TP45_18605 PF00082 Subtilase family TP45_18605 PF12951 Passenger-associated-transport-repeat TP45_18605 PF03797 Autotransporter beta-domain TP45_18610 PF02803 Thiolase, C-terminal domain TP45_18610 PF00108 Thiolase, N-terminal domain TP45_18640 PF04679 ATP dependent DNA ligase C terminal region TP45_18640 PF04675 DNA ligase N terminus TP45_18640 PF01068 ATP dependent DNA ligase domain TP45_18650 PF04675 DNA ligase N terminus TP45_18650 PF01068 ATP dependent DNA ligase domain TP45_18650 PF04679 ATP dependent DNA ligase C terminal region TP45_18655 PF00271 Helicase conserved C-terminal domain TP45_18655 PF00270 DEAD/DEAH box helicase TP45_18655 PF08494 DEAD/H associated TP45_18665 PF01494 FAD binding domain TP45_18670 PF00313 'Cold-shock' DNA-binding domain TP45_18675 PF01048 Phosphorylase superfamily TP45_18685 PF00933 Glycosyl hydrolase family 3 N terminal domain TP45_18690 PF04244 Deoxyribodipyrimidine photo-lyase-related protein TP45_18695 PF01593 Flavin containing amine oxidoreductase TP45_18700 PF01323 DSBA-like thioredoxin domain TP45_18710 PF05958 tRNA (Uracil-5-)-methyltransferase TP45_18720 PF11967 Recombination protein O N terminal TP45_18720 PF02565 Recombination protein O C terminal TP45_18725 PF01926 50S ribosome-binding GTPase TP45_18725 PF07650 KH domain TP45_18730 PF00035 Double-stranded RNA binding motif TP45_18730 PF14622 Ribonuclease-III-like TP45_18740 PF10502 Signal peptidase, peptidase S26 TP45_18745 PF00679 Elongation factor G C-terminus TP45_18745 PF00009 Elongation factor Tu GTP binding domain TP45_18745 PF03144 Elongation factor Tu domain 2 TP45_18745 PF06421 GTP-binding protein LepA C-terminus TP45_18750 PF13180 PDZ domain TP45_18760 PF08281 Sigma-70, region 4 TP45_18760 PF04542 Sigma-70 region 2 TP45_18765 PF00378 Enoyl-CoA hydratase/isomerase TP45_18765 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TP45_18765 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TP45_18785 PF17810 Arginine decarboxylase helical bundle domain TP45_18785 PF17944 Arginine decarboxylase C-terminal helical extension TP45_18785 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TP45_18790 PF17284 Spermidine synthase tetramerisation domain TP45_18820 PF00543 Nitrogen regulatory protein P-II TP45_18825 PF04380 Membrane fusogenic activity TP45_18830 PF01078 Magnesium chelatase, subunit ChlI TP45_18830 PF13335 Magnesium chelatase, subunit ChlI C-terminal TP45_18845 PF12792 CSS motif domain associated with EAL TP45_18845 PF00563 EAL domain TP45_18850 PF00487 Fatty acid desaturase TP45_18855 PF00175 Oxidoreductase NAD-binding domain TP45_18855 PF00111 2Fe-2S iron-sulfur cluster binding domain TP45_18855 PF00970 Oxidoreductase FAD-binding domain TP45_18860 PF00440 Bacterial regulatory proteins, tetR family TP45_18880 PF01139 tRNA-splicing ligase RtcB TP45_18925 PF00486 Transcriptional regulatory protein, C terminal TP45_18925 PF00072 Response regulator receiver domain TP45_18930 PF00512 His Kinase A (phospho-acceptor) domain TP45_18930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_18930 PF08521 Two-component sensor kinase N-terminal TP45_18955 PF00595 PDZ domain TP45_18975 PF01594 AI-2E family transporter TP45_18980 PF13419 Haloacid dehalogenase-like hydrolase TP45_18985 PF00883 Cytosol aminopeptidase family, catalytic domain TP45_18985 PF02789 Cytosol aminopeptidase family, N-terminal domain TP45_18995 PF00199 Catalase TP45_19010 PF00196 Bacterial regulatory proteins, luxR family TP45_19010 PF00072 Response regulator receiver domain TP45_19015 PF07730 Histidine kinase TP45_19020 PF13533 Biotin-lipoyl like TP45_19025 PF00005 ABC transporter TP45_19045 PF00892 EamA-like transporter family TP45_19050 PF00892 EamA-like transporter family TP45_19065 PF00753 Metallo-beta-lactamase superfamily TP45_19070 PF00579 tRNA synthetases class I (W and Y) TP45_19075 PF05532 CsbD-like TP45_19090 PF00491 Arginase family TP45_19115 PF02223 Thymidylate kinase TP45_19130 PF03309 Type III pantothenate kinase TP45_19135 PF03099 Biotin/lipoate A/B protein ligase family TP45_19135 PF02237 Biotin protein ligase C terminal domain TP45_19135 PF08279 HTH domain TP45_19145 PF06167 Glucose-regulated metallo-peptidase M90 TP45_19160 PF00512 His Kinase A (phospho-acceptor) domain TP45_19160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_19160 PF00672 HAMP domain TP45_19165 PF00072 Response regulator receiver domain TP45_19165 PF00486 Transcriptional regulatory protein, C terminal TP45_19175 PF01207 Dihydrouridine synthase (Dus) TP45_19190 PF06628 Catalase-related immune-responsive TP45_19190 PF00199 Catalase TP45_19200 PF06733 DEAD_2 TP45_19200 PF13307 Helicase C-terminal domain TP45_19215 PF08501 Shikimate dehydrogenase substrate binding domain TP45_19215 PF01488 Shikimate / quinate 5-dehydrogenase TP45_19215 PF18317 Shikimate 5'-dehydrogenase C-terminal domain TP45_19225 PF00258 Flavodoxin TP45_19225 PF00175 Oxidoreductase NAD-binding domain TP45_19225 PF00667 FAD binding domain TP45_19235 PF03466 LysR substrate binding domain TP45_19235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_19245 PF00490 Delta-aminolevulinic acid dehydratase TP45_19275 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region TP45_19275 PF00326 Prolyl oligopeptidase family TP45_19280 PF02798 Glutathione S-transferase, N-terminal domain TP45_19280 PF00043 Glutathione S-transferase, C-terminal domain TP45_19315 PF00005 ABC transporter TP45_19325 PF01381 Helix-turn-helix TP45_19340 PF02583 Metal-sensitive transcriptional repressor TP45_19345 PF01545 Cation efflux family TP45_19350 PF01383 CpcD/allophycocyanin linker domain TP45_19350 PF00175 Oxidoreductase NAD-binding domain TP45_19355 PF00005 ABC transporter TP45_19360 PF01061 ABC-2 type transporter TP45_19365 PF02558 Ketopantoate reductase PanE/ApbA TP45_19365 PF08546 Ketopantoate reductase PanE/ApbA C terminal TP45_19395 PF00268 Ribonucleotide reductase, small chain TP45_19405 PF00317 Ribonucleotide reductase, all-alpha domain TP45_19405 PF02867 Ribonucleotide reductase, barrel domain TP45_19405 PF03477 ATP cone domain TP45_19415 PF00583 Acetyltransferase (GNAT) family TP45_19415 PF13607 Succinyl-CoA ligase like flavodoxin domain TP45_19415 PF13380 CoA binding domain TP45_19420 PF03448 MgtE intracellular N domain TP45_19420 PF01769 Divalent cation transporter TP45_19420 PF00571 CBS domain TP45_19425 PF00194 Eukaryotic-type carbonic anhydrase TP45_19430 PF02254 TrkA-N domain TP45_19430 PF00999 Sodium/hydrogen exchanger family TP45_19435 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain TP45_19435 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain TP45_19440 PF00723 Glycosyl hydrolases family 15 TP45_19450 PF05166 YcgL domain TP45_19455 PF00109 Beta-ketoacyl synthase, N-terminal domain TP45_19455 PF02801 Beta-ketoacyl synthase, C-terminal domain TP45_19465 PF00535 Glycosyl transferase family 2 TP45_19475 PF01609 Transposase DDE domain TP45_19475 PF05598 Transposase domain (DUF772) TP45_19520 PF07977 FabA-like domain TP45_19525 PF01553 Acyltransferase TP45_19535 PF00550 Phosphopantetheine attachment site TP45_19540 PF04820 Tryptophan halogenase TP45_19560 PF00326 Prolyl oligopeptidase family TP45_19560 PF07676 WD40-like Beta Propeller Repeat TP45_19575 PF01218 Coproporphyrinogen III oxidase TP45_19580 PF01367 5'-3' exonuclease, C-terminal SAM fold TP45_19580 PF01612 3'-5' exonuclease TP45_19580 PF00476 DNA polymerase family A TP45_19580 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TP45_19610 PF03793 PASTA domain TP45_19610 PF00069 Protein kinase domain TP45_19640 PF00248 Aldo/keto reductase family TP45_19645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_19645 PF03466 LysR substrate binding domain TP45_19660 PF04717 Type VI secretion system, phage-baseplate injector TP45_19675 PF00069 Protein kinase domain TP45_19675 PF03793 PASTA domain TP45_19685 PF08281 Sigma-70, region 4 TP45_19685 PF04542 Sigma-70 region 2 TP45_19700 PF00328 Histidine phosphatase superfamily (branch 2) TP45_19715 PF13683 Integrase core domain TP45_19715 PF13276 HTH-like domain TP45_19720 PF01527 Transposase TP45_19735 PF13333 Integrase core domain TP45_19735 PF00665 Integrase core domain TP45_19735 PF13276 HTH-like domain TP45_19740 PF01527 Transposase TP45_19750 PF10566 Glycoside hydrolase 97 TP45_19750 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation TP45_19750 PF14508 Glycosyl-hydrolase 97 N-terminal TP45_19770 PF13276 HTH-like domain TP45_19770 PF13683 Integrase core domain TP45_19775 PF01527 Transposase TP45_19780 PF01609 Transposase DDE domain TP45_19780 PF05598 Transposase domain (DUF772) TP45_19790 PF00795 Carbon-nitrogen hydrolase TP45_19790 PF02540 NAD synthase TP45_19800 PF00128 Alpha amylase, catalytic domain TP45_19800 PF11896 Domain of unknown function (DUF3416) TP45_19805 PF16657 Maltogenic Amylase, C-terminal domain TP45_19805 PF00128 Alpha amylase, catalytic domain TP45_19810 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) TP45_19810 PF00128 Alpha amylase, catalytic domain TP45_19810 PF02806 Alpha amylase, C-terminal all-beta domain TP45_19820 PF00248 Aldo/keto reductase family TP45_19825 PF00135 Carboxylesterase family TP45_19830 PF07859 alpha/beta hydrolase fold TP45_19830 PF13472 GDSL-like Lipase/Acylhydrolase family TP45_19840 PF03480 Bacterial extracellular solute-binding protein, family 7 TP45_19850 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TP45_19855 PF04616 Glycosyl hydrolases family 43 TP45_19855 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain TP45_19860 PF00356 Bacterial regulatory proteins, lacI family TP45_19865 PF04962 KduI/IolB family TP45_19880 PF00657 GDSL-like Lipase/Acylhydrolase TP45_19890 PF00351 Biopterin-dependent aromatic amino acid hydroxylase TP45_19895 PF01037 Lrp/AsnC ligand binding domain TP45_19900 PF07660 Secretin and TonB N terminus short domain TP45_19900 PF00593 TonB dependent receptor TP45_19900 PF07715 TonB-dependent Receptor Plug Domain TP45_19905 PF01734 Patatin-like phospholipase TP45_19915 PF00005 ABC transporter TP45_19930 PF00005 ABC transporter TP45_19930 PF00571 CBS domain TP45_19935 PF00528 Binding-protein-dependent transport system inner membrane component TP45_19945 PF12867 DinB superfamily TP45_19945 PF03781 Sulfatase-modifying factor enzyme 1 TP45_19980 PF01883 Iron-sulfur cluster assembly protein TP45_19980 PF10609 NUBPL iron-transfer P-loop NTPase TP45_19995 PF13091 PLD-like domain TP45_20000 PF03061 Thioesterase superfamily TP45_20030 PF08240 Alcohol dehydrogenase GroES-like domain TP45_20030 PF00107 Zinc-binding dehydrogenase TP45_20040 PF02673 Bacitracin resistance protein BacA TP45_20045 PF00120 Glutamine synthetase, catalytic domain TP45_20045 PF03951 Glutamine synthetase, beta-Grasp domain TP45_20050 PF00543 Nitrogen regulatory protein P-II TP45_20055 PF00909 Ammonium Transporter Family TP45_20060 PF00512 His Kinase A (phospho-acceptor) domain TP45_20060 PF00989 PAS fold TP45_20060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_20065 PF02954 Bacterial regulatory protein, Fis family TP45_20065 PF00072 Response regulator receiver domain TP45_20065 PF00158 Sigma-54 interaction domain TP45_20070 PF00080 Copper/zinc superoxide dismutase (SODC) TP45_20075 PF00080 Copper/zinc superoxide dismutase (SODC) TP45_20080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TP45_20090 PF02803 Thiolase, C-terminal domain TP45_20090 PF00108 Thiolase, N-terminal domain TP45_20125 PF00581 Rhodanese-like domain TP45_20130 PF02556 Preprotein translocase subunit SecB TP45_20135 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TP45_20135 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TP45_20155 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TP45_20155 PF00205 Thiamine pyrophosphate enzyme, central domain TP45_20155 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TP45_20160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_20165 PF00158 Sigma-54 interaction domain TP45_20165 PF00072 Response regulator receiver domain TP45_20165 PF02954 Bacterial regulatory protein, Fis family TP45_20180 PF07690 Major Facilitator Superfamily TP45_20185 PF00588 SpoU rRNA Methylase family TP45_20200 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TP45_20200 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TP45_20205 PF13784 Fic/DOC family N-terminal TP45_20205 PF02661 Fic/DOC family TP45_20210 PF00561 alpha/beta hydrolase fold TP45_20215 PF03692 Putative zinc- or iron-chelating domain TP45_20220 PF00501 AMP-binding enzyme TP45_20230 PF00144 Beta-lactamase TP45_20235 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family TP45_20260 PF03109 ABC1 family TP45_20270 PF00849 RNA pseudouridylate synthase TP45_20280 PF00472 RF-1 domain TP45_20290 PF01112 Asparaginase TP45_20295 PF01432 Peptidase family M3 TP45_20300 PF00106 short chain dehydrogenase TP45_20305 PF12706 Beta-lactamase superfamily domain TP45_20325 PF12833 Helix-turn-helix domain TP45_20330 PF00999 Sodium/hydrogen exchanger family TP45_20335 PF03466 LysR substrate binding domain TP45_20335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_20340 PF01274 Malate synthase TP45_20345 PF00463 Isocitrate lyase family TP45_20350 PF00990 Diguanylate cyclase, GGDEF domain TP45_20370 PF00326 Prolyl oligopeptidase family TP45_20375 PF13683 Integrase core domain TP45_20375 PF13276 HTH-like domain TP45_20380 PF01527 Transposase TP45_20390 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TP45_20390 PF00364 Biotin-requiring enzyme TP45_20390 PF00289 Biotin carboxylase, N-terminal domain TP45_20390 PF02785 Biotin carboxylase C-terminal domain TP45_20395 PF01039 Carboxyl transferase domain TP45_20400 PF02770 Acyl-CoA dehydrogenase, middle domain TP45_20400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TP45_20400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TP45_20455 PF02492 CobW/HypB/UreG, nucleotide-binding domain TP45_20455 PF07683 Cobalamin synthesis protein cobW C-terminal domain TP45_20480 PF03969 AFG1-like ATPase TP45_20485 PF01047 MarR family TP45_20490 PF02566 OsmC-like protein TP45_20520 PF00107 Zinc-binding dehydrogenase TP45_20520 PF16884 N-terminal domain of oxidoreductase TP45_20535 PF00849 RNA pseudouridylate synthase TP45_20540 PF00593 TonB dependent receptor TP45_20550 PF08482 ATP-dependent helicase C-terminal TP45_20550 PF00271 Helicase conserved C-terminal domain TP45_20550 PF04408 Helicase associated domain (HA2) TP45_20550 PF00270 DEAD/DEAH box helicase TP45_20555 PF07308 Protein of unknown function (DUF1456) TP45_20560 PF00576 HIUase/Transthyretin family TP45_20565 PF13454 FAD-NAD(P)-binding TP45_20570 PF09349 OHCU decarboxylase TP45_20570 PF01014 Uricase TP45_20585 PF00266 Aminotransferase class-V TP45_20590 PF01546 Peptidase family M20/M25/M40 TP45_20590 PF07687 Peptidase dimerisation domain TP45_20595 PF03466 LysR substrate binding domain TP45_20595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_20600 PF00561 alpha/beta hydrolase fold TP45_20615 PF01425 Amidase TP45_20620 PF01156 Inosine-uridine preferring nucleoside hydrolase TP45_20630 PF00860 Permease family TP45_20640 PF00111 2Fe-2S iron-sulfur cluster binding domain TP45_20645 PF00355 Rieske [2Fe-2S] domain TP45_20650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_20650 PF03466 LysR substrate binding domain TP45_20655 PF01026 TatD related DNase TP45_20665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_20665 PF03466 LysR substrate binding domain TP45_20670 PF07690 Major Facilitator Superfamily TP45_20680 PF00561 alpha/beta hydrolase fold TP45_20680 PF08386 TAP-like protein TP45_20685 PF02146 Sir2 family TP45_20690 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TP45_20695 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TP45_20695 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TP45_20705 PF00551 Formyl transferase TP45_20710 PF00072 Response regulator receiver domain TP45_20710 PF00486 Transcriptional regulatory protein, C terminal TP45_20715 PF00512 His Kinase A (phospho-acceptor) domain TP45_20715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_20715 PF00672 HAMP domain TP45_20720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TP45_20720 PF00529 HlyD membrane-fusion protein of T1SS TP45_20725 PF00873 AcrB/AcrD/AcrF family TP45_20730 PF02321 Outer membrane efflux protein TP45_20730 PF08139 Prokaryotic membrane lipoprotein lipid attachment site TP45_20740 PF02219 Methylenetetrahydrofolate reductase TP45_20745 PF02677 Epoxyqueuosine reductase QueH TP45_20750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_20750 PF03466 LysR substrate binding domain TP45_20755 PF03358 NADPH-dependent FMN reductase TP45_20765 PF01717 Cobalamin-independent synthase, Catalytic domain TP45_20765 PF08267 Cobalamin-independent synthase, N-terminal domain TP45_20770 PF03812 2-keto-3-deoxygluconate permease TP45_20785 PF05368 NmrA-like family TP45_20790 PF01638 HxlR-like helix-turn-helix TP45_20825 PF00920 Dehydratase family TP45_20845 PF00132 Bacterial transferase hexapeptide (six repeats) TP45_20855 PF07690 Major Facilitator Superfamily TP45_20860 PF01966 HD domain TP45_20860 PF11871 Domain of unknown function (DUF3391) TP45_20880 PF00171 Aldehyde dehydrogenase family TP45_20890 PF01494 FAD binding domain TP45_20900 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TP45_20900 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TP45_20905 PF00230 Major intrinsic protein TP45_20910 PF16901 C-terminal domain of alpha-glycerophosphate oxidase TP45_20910 PF01266 FAD dependent oxidoreductase TP45_20915 PF00455 DeoR C terminal sensor domain TP45_20915 PF08220 DeoR-like helix-turn-helix domain TP45_20925 PF00355 Rieske [2Fe-2S] domain TP45_20930 PF01144 Coenzyme A transferase TP45_20935 PF01144 Coenzyme A transferase TP45_20940 PF00108 Thiolase, N-terminal domain TP45_20940 PF02803 Thiolase, C-terminal domain TP45_20945 PF00775 Dioxygenase TP45_20945 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal TP45_20955 PF10397 Adenylosuccinate lyase C-terminus TP45_20955 PF00206 Lyase TP45_20960 PF12146 Serine aminopeptidase, S33 TP45_20965 PF02627 Carboxymuconolactone decarboxylase family TP45_20975 PF09339 IclR helix-turn-helix domain TP45_20975 PF01614 Bacterial transcriptional regulator TP45_20985 PF07859 alpha/beta hydrolase fold TP45_20995 PF10677 Protein of unknown function (DUF2490) TP45_21000 PF01134 Glucose inhibited division protein A TP45_21000 PF13932 GidA associated domain TP45_21010 PF00291 Pyridoxal-phosphate dependent enzyme TP45_21030 PF13649 Methyltransferase domain TP45_21040 PF12697 Alpha/beta hydrolase family TP45_21050 PF00155 Aminotransferase class I and II TP45_21055 PF06968 Biotin and Thiamin Synthesis associated domain TP45_21055 PF04055 Radical SAM superfamily TP45_21065 PF01040 UbiA prenyltransferase family TP45_21095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_21095 PF08448 PAS fold TP45_21095 PF00512 His Kinase A (phospho-acceptor) domain TP45_21095 PF00072 Response regulator receiver domain TP45_21095 PF13188 PAS domain TP45_21100 PF01527 Transposase TP45_21105 PF13683 Integrase core domain TP45_21105 PF13276 HTH-like domain TP45_21120 PF08659 KR domain TP45_21120 PF00698 Acyl transferase domain TP45_21120 PF08240 Alcohol dehydrogenase GroES-like domain TP45_21120 PF00107 Zinc-binding dehydrogenase TP45_21120 PF16197 Ketoacyl-synthetase C-terminal extension TP45_21120 PF00109 Beta-ketoacyl synthase, N-terminal domain TP45_21120 PF02801 Beta-ketoacyl synthase, C-terminal domain TP45_21120 PF14765 Polyketide synthase dehydratase TP45_21120 PF00550 Phosphopantetheine attachment site TP45_21125 PF01553 Acyltransferase TP45_21135 PF00356 Bacterial regulatory proteins, lacI family TP45_21155 PF04820 Tryptophan halogenase TP45_21160 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TP45_21165 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) TP45_21170 PF04337 Protein of unknown function, DUF480 TP45_21180 PF13302 Acetyltransferase (GNAT) domain TP45_21185 PF00580 UvrD/REP helicase N-terminal domain TP45_21185 PF13361 UvrD-like helicase C-terminal domain TP45_21190 PF00265 Thymidine kinase TP45_21195 PF01590 GAF domain TP45_21195 PF00360 Phytochrome region TP45_21195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TP45_21195 PF00512 His Kinase A (phospho-acceptor) domain TP45_21195 PF08446 PAS fold TP45_21200 PF04349 Periplasmic glucan biosynthesis protein, MdoG TP45_21210 PF06827 Zinc finger found in FPG and IleRS TP45_21210 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain TP45_21210 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain TP45_21240 PF03594 Benzoate membrane transport protein TP45_21245 PF00360 Phytochrome region TP45_21245 PF08446 PAS fold TP45_21245 PF01590 GAF domain TP45_21245 PF13426 PAS domain TP45_21250 PF01126 Heme oxygenase TP45_21255 PF07690 Major Facilitator Superfamily TP45_21260 PF01263 Aldose 1-epimerase TP45_21270 PF02810 SEC-C motif TP45_21275 PF01925 Sulfite exporter TauE/SafE TP45_21295 PF01227 GTP cyclohydrolase I TP45_21305 PF07869 Protein of unknown function (DUF1656) TP45_21310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TP45_21310 PF00529 HlyD membrane-fusion protein of T1SS TP45_21315 PF02321 Outer membrane efflux protein TP45_21320 PF04632 Fusaric acid resistance protein family TP45_21325 PF00083 Sugar (and other) transporter TP45_21335 PF03466 LysR substrate binding domain TP45_21335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TP45_21340 PF00106 short chain dehydrogenase TP45_21350 PF13396 Phospholipase_D-nuclease N-terminal TP45_21350 PF13091 PLD-like domain TP45_21410 PF02785 Biotin carboxylase C-terminal domain TP45_21410 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TP45_21410 PF00289 Biotin carboxylase, N-terminal domain TP45_21465 PF13538 UvrD-like helicase C-terminal domain TP45_21470 PF13361 UvrD-like helicase C-terminal domain TP45_21470 PF00580 UvrD/REP helicase N-terminal domain TP45_21470 PF12705 PD-(D/E)XK nuclease superfamily TP45_21475 PF17946 RecC C-terminal domain TP45_21510 PF00005 ABC transporter TP45_21515 PF02405 Permease MlaE TP45_21520 PF02470 MlaD protein TP45_21525 PF05494 MlaC protein TP45_21535 PF04333 MlaA lipoprotein TP45_21545 PF00255 Glutathione peroxidase TP45_21555 PF02646 RmuC family TP45_21565 PF13417 Glutathione S-transferase, N-terminal domain TP45_21565 PF00043 Glutathione S-transferase, C-terminal domain TP45_21575 PF13520 Amino acid permease TP45_21590 PF13556 PucR C-terminal helix-turn-helix domain TP45_21590 PF17853 GGDEF-like domain TP45_21590 PF05651 Putative sugar diacid recognition TP45_21595 PF02595 Glycerate kinase family TP45_21600 PF07690 Major Facilitator Superfamily TP45_21615 PF17785 PUA-like domain TP45_21615 PF10672 S-adenosylmethionine-dependent methyltransferase TP45_21620 PF03741 Integral membrane protein TerC family TP45_21625 PF01694 Rhomboid family TP45_21630 PF03009 Glycerophosphoryl diester phosphodiesterase family TP45_21640 PF01569 PAP2 superfamily TP45_21645 PF01926 50S ribosome-binding GTPase TP45_21645 PF10396 GTP-binding protein TrmE N-terminus TP45_21645 PF12631 MnmE helical domain TP45_21655 PF14849 YidC periplasmic domain TP45_21655 PF02096 60Kd inner membrane protein TP45_21660 PF00825 Ribonuclease P TP45_21665 PF00468 Ribosomal protein L34 TP45_21705 PF02796 Helix-turn-helix domain of resolvase TP45_21705 PF00239 Resolvase, N terminal domain TP45_21720 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system TP45_21730 PF07015 VirC1 protein TP45_21745 PF02796 Helix-turn-helix domain of resolvase TP45_21745 PF00239 Resolvase, N terminal domain TP45_21750 PF04221 RelB antitoxin TP45_21755 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ TP45_21815 PF13091 PLD-like domain TP45_21825 PF01464 Transglycosylase SLT domain TP45_21830 PF00437 Type II/IV secretion system protein TP45_21835 PF03743 Bacterial conjugation TrbI-like protein TP45_21840 PF03524 Conjugal transfer protein TP45_21850 PF04610 TrbL/VirB6 plasmid conjugal transfer protein