CLM98_00010 PF03594 CLM98_00010 CLM98_00015 PF00360 Phytochrome region CLM98_00015 PF01590 GAF domain CLM98_00015 PF08446 PAS fold CLM98_00015 PF08448 PAS fold CLM98_00020 PF01126 Heme oxygenase CLM98_00030 PF01263 Aldose 1-epimerase CLM98_00030 PF01471 Putative peptidoglycan binding domain CLM98_00030 PF13406 Transglycosylase SLT domain CLM98_00040 PF02810 SEC-C motif CLM98_00045 PF01925 CLM98_00045 CLM98_00050 PF13555 P-loop containing region of AAA domain CLM98_00050 PF13558 Putative exonuclease SbcCD, C subunit CLM98_00055 PF13835 CLM98_00055 CLM98_00060 PF11855 CLM98_00060 CLM98_00065 PF01227 GTP cyclohydrolase I CLM98_00070 PF12802 MarR family CLM98_00075 PF07869 CLM98_00075 CLM98_00080 PF13437 HlyD family secretion protein CLM98_00080 PF13533 Biotin-lipoyl like CLM98_00085 PF02321 Outer membrane efflux protein CLM98_00090 PF04632 CLM98_00090 CLM98_00095 PF00083 Sugar (and other) transporter CLM98_00105 PF13091 PLD-like domain CLM98_00120 PF05016 Plasmid stabilisation system protein CLM98_00125 PF03869 Arc-like DNA binding domain CLM98_00130 PF01850 PIN domain CLM98_00135 PF00756 Putative esterase CLM98_00140 PF09722 CLM98_00140 CLM98_00155 PF00849 RNA pseudouridylate synthase CLM98_00175 PF07080 Protein of unknown function (DUF1348) CLM98_00180 PF01609 Transposase DDE domain CLM98_00185 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain CLM98_00185 PF00364 Biotin-requiring enzyme CLM98_00185 PF02626 Allophanate hydrolase subunit 2 CLM98_00185 PF02682 Allophanate hydrolase subunit 1 CLM98_00185 PF02785 Biotin carboxylase C-terminal domain CLM98_00185 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLM98_00190 PF01425 Amidase CLM98_00205 PF05299 M61 glycyl aminopeptidase CLM98_00215 PF01156 Inosine-uridine preferring nucleoside hydrolase CLM98_00220 PF13245 Part of AAA domain CLM98_00220 PF13538 UvrD-like helicase C-terminal domain CLM98_00225 PF00580 UvrD/REP helicase N-terminal domain CLM98_00225 PF12705 PD-(D/E)XK nuclease superfamily CLM98_00225 PF13361 UvrD-like helicase C-terminal domain CLM98_00230 PF04257 Exodeoxyribonuclease V, gamma subunit CLM98_00245 PF00005 ABC transporter CLM98_00250 PF02405 CLM98_00250 CLM98_00255 PF02470 CLM98_00255 CLM98_00260 PF05494 Toluene tolerance, Ttg2 CLM98_00265 PF13466 STAS domain CLM98_00270 PF04333 CLM98_00270 CLM98_00275 PF14534 Domain of unknown function (DUF4440) CLM98_00280 PF00255 Glutathione peroxidase CLM98_00290 PF02646 CLM98_00290 CLM98_00295 PF08240 Alcohol dehydrogenase GroES-like domain CLM98_00295 PF13602 Zinc-binding dehydrogenase CLM98_00300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_00300 PF03466 LysR substrate binding domain CLM98_00315 PF13410 Glutathione S-transferase, C-terminal domain CLM98_00315 PF13417 Glutathione S-transferase, N-terminal domain CLM98_00325 PF13520 Amino acid permease CLM98_00330 PF07971 Glycosyl hydrolase family 92 CLM98_00340 PF10947 CLM98_00340 CLM98_00345 PF00990 GGDEF domain CLM98_00345 PF01590 GAF domain CLM98_00345 PF08448 PAS fold CLM98_00350 PF05651 CLM98_00350 CLM98_00350 PF13556 PucR C-terminal helix-turn-helix domain CLM98_00355 PF02595 Glycerate kinase family CLM98_00360 PF07690 Major Facilitator Superfamily CLM98_00365 PF01244 Membrane dipeptidase (Peptidase family M19) CLM98_00375 PF10672 S-adenosylmethionine-dependent methyltransferase CLM98_00385 PF03741 CLM98_00385 CLM98_00395 PF01694 Rhomboid family CLM98_00400 PF03009 Glycerophosphoryl diester phosphodiesterase family CLM98_00405 PF00593 TonB dependent receptor CLM98_00405 PF07715 TonB-dependent Receptor Plug Domain CLM98_00410 PF01569 PAP2 superfamily CLM98_00415 PF01926 50S ribosome-binding GTPase CLM98_00415 PF10396 GTP-binding protein TrmE N-terminus CLM98_00415 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE CLM98_00420 PF00656 Caspase domain CLM98_00420 PF01522 Polysaccharide deacetylase CLM98_00420 PF13424 Tetratricopeptide repeat CLM98_00425 PF02096 60Kd inner membrane protein CLM98_00425 PF14849 YidC periplasmic domain CLM98_00430 PF00825 Ribonuclease P CLM98_00435 PF00468 Ribosomal protein L34 CLM98_00445 PF00308 Bacterial dnaA protein CLM98_00445 PF08299 Bacterial dnaA protein helix-turn-helix CLM98_00445 PF11638 DnaA N-terminal domain CLM98_00450 PF00712 DNA polymerase III beta subunit, N-terminal domain CLM98_00450 PF02767 DNA polymerase III beta subunit, central domain CLM98_00450 PF02768 DNA polymerase III beta subunit, C-terminal domain CLM98_00455 PF02463 RecF/RecN/SMC N terminal domain CLM98_00460 PF00204 DNA gyrase B CLM98_00460 PF00986 DNA gyrase B subunit, carboxyl terminus CLM98_00460 PF01751 Toprim domain CLM98_00460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_00465 PF02517 CAAX protease self-immunity CLM98_00470 PF01435 Peptidase family M48 CLM98_00475 PF09295 ChAPs (Chs5p-Arf1p-binding proteins) CLM98_00480 PF03544 Gram-negative bacterial TonB protein C-terminal CLM98_00485 PF01618 CLM98_00485 CLM98_00490 PF02472 Biopolymer transport protein ExbD/TolR CLM98_00495 PF02472 Biopolymer transport protein ExbD/TolR CLM98_00500 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CLM98_00510 PF13091 PLD-like domain CLM98_00525 PF04055 Radical SAM superfamily CLM98_00530 PF13640 2OG-Fe(II) oxygenase superfamily CLM98_00535 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CLM98_00540 PF01694 Rhomboid family CLM98_00545 PF08850 CLM98_00545 CLM98_00550 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLM98_00550 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLM98_00555 PF03572 Peptidase family S41 CLM98_00555 PF13180 PDZ domain CLM98_00560 PF01551 Peptidase family M23 CLM98_00570 PF02225 PA domain CLM98_00570 PF04389 Peptidase family M28 CLM98_00575 PF13670 CLM98_00575 CLM98_00580 PF00150 Cellulase (glycosyl hydrolase family 5) CLM98_00590 PF00150 Cellulase (glycosyl hydrolase family 5) CLM98_00600 PF00150 Cellulase (glycosyl hydrolase family 5) CLM98_00610 PF00107 Zinc-binding dehydrogenase CLM98_00610 PF08240 Alcohol dehydrogenase GroES-like domain CLM98_00615 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM98_00615 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLM98_00620 PF00310 Glutamine amidotransferases class-II CLM98_00620 PF01493 GXGXG motif CLM98_00620 PF01645 Conserved region in glutamate synthase CLM98_00620 PF04898 Glutamate synthase central domain CLM98_00625 PF11720 Peptidase inhibitor I78 family CLM98_00630 PF01028 Eukaryotic DNA topoisomerase I, catalytic core CLM98_00645 PF05368 NmrA-like family CLM98_00650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_00650 PF03466 LysR substrate binding domain CLM98_00660 PF00534 Glycosyl transferases group 1 CLM98_00660 PF13439 Glycosyltransferase Family 4 CLM98_00665 PF00534 Glycosyl transferases group 1 CLM98_00665 PF13439 Glycosyltransferase Family 4 CLM98_00670 PF02397 CLM98_00670 CLM98_00670 PF13727 CoA-binding domain CLM98_00675 PF02350 UDP-N-acetylglucosamine 2-epimerase CLM98_00680 PF04932 CLM98_00680 CLM98_00685 PF03808 CLM98_00685 CLM98_00690 PF13439 Glycosyltransferase Family 4 CLM98_00690 PF13692 Glycosyl transferases group 1 CLM98_00710 PF00733 Asparagine synthase CLM98_00710 PF13537 Glutamine amidotransferase domain CLM98_00720 PF05711 Macrocin-O-methyltransferase (TylF) CLM98_00725 PF01370 NAD dependent epimerase/dehydratase family CLM98_00735 PF01943 CLM98_00735 CLM98_00735 PF14667 Polysaccharide biosynthesis C-terminal domain CLM98_00740 PF00005 ABC transporter CLM98_00740 PF00664 ABC transporter transmembrane region CLM98_00745 PF13471 CLM98_00745 CLM98_00755 PF00733 Asparagine synthase CLM98_00755 PF13537 Glutamine amidotransferase domain CLM98_00760 PF13847 Methyltransferase domain CLM98_00765 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CLM98_00775 PF00685 Sulfotransferase domain CLM98_00780 PF13673 Acetyltransferase (GNAT) domain CLM98_00785 PF07484 Phage Tail Collar Domain CLM98_00790 PF07484 Phage Tail Collar Domain CLM98_00795 PF07484 Phage Tail Collar Domain CLM98_00800 PF14907 Uncharacterised nucleotidyltransferase CLM98_00805 PF03965 Penicillinase repressor CLM98_00810 PF05569 BlaR1 peptidase M56 CLM98_00830 PF03435 Saccharopine dehydrogenase CLM98_00835 PF08975 Domain of unknown function (DUF1868) CLM98_00840 PF00593 TonB dependent receptor CLM98_00840 PF07715 TonB-dependent Receptor Plug Domain CLM98_00845 PF00480 ROK family CLM98_00850 PF03009 Glycerophosphoryl diester phosphodiesterase family CLM98_00860 PF13482 RNase_H superfamily CLM98_00865 PF00270 DEAD/DEAH box helicase CLM98_00865 PF00271 Helicase conserved C-terminal domain CLM98_00865 PF09369 CLM98_00865 CLM98_00870 PF03006 CLM98_00870 CLM98_00875 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CLM98_00880 PF05016 Plasmid stabilisation system protein CLM98_00890 PF00106 short chain dehydrogenase CLM98_00895 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_00900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_00900 PF03466 LysR substrate binding domain CLM98_00905 PF14305 CLM98_00905 CLM98_00920 PF02525 Flavodoxin-like fold CLM98_00940 PF01609 Transposase DDE domain CLM98_00985 PF05532 CsbD-like CLM98_00990 PF08668 HDOD domain CLM98_00995 PF08327 Activator of Hsp90 ATPase homolog 1-like protein CLM98_01005 PF01447 Thermolysin metallopeptidase, catalytic domain CLM98_01005 PF02868 Thermolysin metallopeptidase, alpha-helical domain CLM98_01010 PF13460 NADH(P)-binding CLM98_01015 PF00293 NUDIX domain CLM98_01020 PF01435 Peptidase family M48 CLM98_01030 PF10116 CLM98_01030 CLM98_01035 PF00085 Thioredoxin CLM98_01045 PF00083 Sugar (and other) transporter CLM98_01050 PF08327 Activator of Hsp90 ATPase homolog 1-like protein CLM98_01055 PF12787 CLM98_01055 CLM98_01060 PF06080 CLM98_01060 CLM98_01075 PF07584 CLM98_01075 CLM98_01080 PF01882 CLM98_01080 CLM98_01085 PF07726 ATPase family associated with various cellular activities (AAA) CLM98_01090 PF13709 Domain of unknown function (DUF4159) CLM98_01095 PF01523 Putative modulator of DNA gyrase CLM98_01100 PF01523 Putative modulator of DNA gyrase CLM98_01105 PF01523 Putative modulator of DNA gyrase CLM98_01115 PF00316 Fructose-1-6-bisphosphatase CLM98_01120 PF00155 Aminotransferase class I and II CLM98_01125 PF00593 TonB dependent receptor CLM98_01125 PF07715 TonB-dependent Receptor Plug Domain CLM98_01135 PF07883 Cupin domain CLM98_01140 PF00171 Aldehyde dehydrogenase family CLM98_01145 PF05610 CLM98_01145 CLM98_01165 PF01070 FMN-dependent dehydrogenase CLM98_01175 PF00144 Beta-lactamase CLM98_01180 PF07730 Histidine kinase CLM98_01185 PF00072 Response regulator receiver domain CLM98_01185 PF00196 Bacterial regulatory proteins, luxR family CLM98_01205 PF00486 Transcriptional regulatory protein, C terminal CLM98_01205 PF13191 AAA ATPase domain CLM98_01210 PF07055 Enoyl reductase FAD binding domain CLM98_01210 PF12241 Trans-2-enoyl-CoA reductase catalytic region CLM98_01210 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CLM98_01220 PF00294 pfkB family carbohydrate kinase CLM98_01225 PF00593 TonB dependent receptor CLM98_01225 PF07715 TonB-dependent Receptor Plug Domain CLM98_01235 PF13385 Concanavalin A-like lectin/glucanases superfamily CLM98_01250 PF13619 CLM98_01250 CLM98_01255 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CLM98_01260 PF01609 Transposase DDE domain CLM98_01285 PF00128 Alpha amylase, catalytic domain CLM98_01285 PF11896 Domain of unknown function (DUF3416) CLM98_01290 PF00128 Alpha amylase, catalytic domain CLM98_01290 PF16657 CLM98_01290 CLM98_01295 PF00128 Alpha amylase, catalytic domain CLM98_01295 PF02806 Alpha amylase, C-terminal all-beta domain CLM98_01295 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CLM98_01300 PF12850 Calcineurin-like phosphoesterase superfamily domain CLM98_01305 PF00248 Aldo/keto reductase family CLM98_01310 PF00135 Carboxylesterase family CLM98_01315 PF07859 alpha/beta hydrolase fold CLM98_01325 PF03480 Bacterial extracellular solute-binding protein, family 7 CLM98_01330 PF04290 CLM98_01330 CLM98_01335 PF06808 CLM98_01335 CLM98_01340 PF04616 Glycosyl hydrolases family 43 CLM98_01345 PF00356 Bacterial regulatory proteins, lacI family CLM98_01345 PF13377 Periplasmic binding protein-like domain CLM98_01355 PF04962 KduI/IolB family CLM98_01360 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_01365 PF02502 Ribose/Galactose Isomerase CLM98_01365 PF12408 Ribose-5-phosphate isomerase CLM98_01370 PF07883 Cupin domain CLM98_01370 PF13472 GDSL-like Lipase/Acylhydrolase family CLM98_01375 PF05299 M61 glycyl aminopeptidase CLM98_01380 PF14300 Domain of unknown function (DUF4375) CLM98_01385 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CLM98_01390 PF01037 AsnC family CLM98_01390 PF13404 AsnC-type helix-turn-helix domain CLM98_01395 PF00593 TonB dependent receptor CLM98_01395 PF07715 TonB-dependent Receptor Plug Domain CLM98_01400 PF01734 Patatin-like phospholipase CLM98_01405 PF01987 Mitochondrial biogenesis AIM24 CLM98_01410 PF00005 ABC transporter CLM98_01415 PF00487 CLM98_01415 CLM98_01420 PF13202 EF hand CLM98_01425 PF00005 ABC transporter CLM98_01430 PF00528 Binding-protein-dependent transport system inner membrane component CLM98_01430 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CLM98_01435 PF00266 Aminotransferase class-V CLM98_01440 PF03781 Sulfatase-modifying factor enzyme 1 CLM98_01440 PF12867 DinB superfamily CLM98_01445 PF10017 CLM98_01445 CLM98_01450 PF11625 Protein of unknown function (DUF3253) CLM98_01460 PF13560 Helix-turn-helix domain CLM98_01465 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CLM98_01475 PF03547 CLM98_01475 CLM98_01485 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLM98_01490 PF00300 Histidine phosphatase superfamily (branch 1) CLM98_01495 PF04264 YceI-like domain CLM98_01500 PF13091 PLD-like domain CLM98_01505 PF03061 Thioesterase superfamily CLM98_01510 PF01553 Acyltransferase CLM98_01515 PF12146 Putative lysophospholipase CLM98_01525 PF13432 Tetratricopeptide repeat CLM98_01530 PF01161 Phosphatidylethanolamine-binding protein CLM98_01535 PF00107 Zinc-binding dehydrogenase CLM98_01535 PF08240 Alcohol dehydrogenase GroES-like domain CLM98_01540 PF03724 META domain CLM98_01540 PF14302 CLM98_01540 CLM98_01545 PF02673 CLM98_01545 CLM98_01555 PF00120 Glutamine synthetase, catalytic domain CLM98_01555 PF03951 Glutamine synthetase, beta-Grasp domain CLM98_01560 PF00543 Nitrogen regulatory protein P-II CLM98_01565 PF00909 Ammonium Transporter Family CLM98_01570 PF00512 His Kinase A (phospho-acceptor) domain CLM98_01570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_01575 PF00072 Response regulator receiver domain CLM98_01575 PF00158 Sigma-54 interaction domain CLM98_01575 PF02954 Bacterial regulatory protein, Fis family CLM98_01580 PF00080 Copper/zinc superoxide dismutase (SODC) CLM98_01585 PF00080 Copper/zinc superoxide dismutase (SODC) CLM98_01595 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLM98_01605 PF00108 Thiolase, N-terminal domain CLM98_01605 PF02803 Thiolase, C-terminal domain CLM98_01610 PF07219 CLM98_01610 CLM98_01615 PF04375 CLM98_01615 CLM98_01620 PF02602 Uroporphyrinogen-III synthase HemD CLM98_01625 PF01755 CLM98_01625 CLM98_01630 PF09500 Putative thioesterase (yiiD_Cterm) CLM98_01640 PF00581 Rhodanese-like domain CLM98_01645 PF02556 Preprotein translocase subunit SecB CLM98_01650 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CLM98_01650 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CLM98_01665 PF00205 Thiamine pyrophosphate enzyme, central domain CLM98_01665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLM98_01665 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLM98_01670 PF00512 His Kinase A (phospho-acceptor) domain CLM98_01670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_01675 PF00072 Response regulator receiver domain CLM98_01675 PF00158 Sigma-54 interaction domain CLM98_01675 PF02954 Bacterial regulatory protein, Fis family CLM98_01690 PF07690 Major Facilitator Superfamily CLM98_01695 PF00588 SpoU rRNA Methylase family CLM98_01705 PF13698 CLM98_01705 CLM98_01710 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLM98_01710 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLM98_01715 PF02661 Fic/DOC family CLM98_01715 PF13784 Fic/DOC family N-terminal CLM98_01720 PF00561 alpha/beta hydrolase fold CLM98_01725 PF03692 CLM98_01725 CLM98_01730 PF00501 AMP-binding enzyme CLM98_01735 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family CLM98_01740 PF07043 CLM98_01740 CLM98_01750 PF01820 D-ala D-ala ligase N-terminus CLM98_01760 PF02036 SCP-2 sterol transfer family CLM98_01765 PF03109 CLM98_01765 CLM98_01770 PF07883 Cupin domain CLM98_01775 PF00849 RNA pseudouridylate synthase CLM98_01780 PF09832 Uncharacterized protein conserved in bacteria (DUF2059) CLM98_01785 PF00472 RF-1 domain CLM98_01790 PF01553 Acyltransferase CLM98_01795 PF01112 Asparaginase CLM98_01800 PF01432 Peptidase family M3 CLM98_01805 PF12706 Beta-lactamase superfamily domain CLM98_01815 PF00440 Bacterial regulatory proteins, tetR family CLM98_01815 PF14246 AefR-like transcriptional repressor, C-terminal region CLM98_01820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLM98_01825 PF12833 Helix-turn-helix domain CLM98_01830 PF00999 Sodium/hydrogen exchanger family CLM98_01835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_01835 PF03466 LysR substrate binding domain CLM98_01840 PF01274 Malate synthase CLM98_01845 PF00463 Isocitrate lyase family CLM98_01850 PF00027 Cyclic nucleotide-binding domain CLM98_01850 PF00990 GGDEF domain CLM98_01870 PF00326 Prolyl oligopeptidase family CLM98_01875 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain CLM98_01875 PF00364 Biotin-requiring enzyme CLM98_01875 PF02785 Biotin carboxylase C-terminal domain CLM98_01875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLM98_01880 PF01039 Carboxyl transferase domain CLM98_01885 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLM98_01885 PF02770 Acyl-CoA dehydrogenase, middle domain CLM98_01885 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLM98_01890 PF00440 Bacterial regulatory proteins, tetR family CLM98_01900 PF08808 CLM98_01900 CLM98_01905 PF11804 CLM98_01905 CLM98_01910 PF03929 CLM98_01910 CLM98_01915 PF12365 CLM98_01915 CLM98_01925 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLM98_01930 PF03372 Endonuclease/Exonuclease/phosphatase family CLM98_01940 PF03203 CLM98_01940 CLM98_01945 PF02492 CobW/HypB/UreG, nucleotide-binding domain CLM98_01945 PF07683 Cobalamin synthesis protein cobW C-terminal domain CLM98_01960 PF12146 Putative lysophospholipase CLM98_01965 PF03969 AFG1-like ATPase CLM98_01970 PF01047 MarR family CLM98_01975 PF02566 OsmC-like protein CLM98_01985 PF12697 Alpha/beta hydrolase family CLM98_01990 PF11101 CLM98_01990 CLM98_02005 PF00107 Zinc-binding dehydrogenase CLM98_02005 PF16884 CLM98_02005 CLM98_02010 PF00248 Aldo/keto reductase family CLM98_02020 PF00849 RNA pseudouridylate synthase CLM98_02025 PF00593 TonB dependent receptor CLM98_02025 PF07715 TonB-dependent Receptor Plug Domain CLM98_02025 PF13620 Carboxypeptidase regulatory-like domain CLM98_02035 PF00271 Helicase conserved C-terminal domain CLM98_02035 PF04408 Helicase associated domain (HA2) CLM98_02035 PF08482 CLM98_02035 CLM98_02045 PF07308 CLM98_02045 CLM98_02050 PF00576 HIUase/Transthyretin family CLM98_02055 PF13738 Pyridine nucleotide-disulphide oxidoreductase CLM98_02060 PF09349 OHCU decarboxylase CLM98_02065 PF11533 Protein of unknown function (DUF3225) CLM98_02070 PF01522 Polysaccharide deacetylase CLM98_02075 PF00266 Aminotransferase class-V CLM98_02080 PF01546 Peptidase family M20/M25/M40 CLM98_02080 PF07687 Peptidase dimerisation domain CLM98_02085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_02085 PF03466 LysR substrate binding domain CLM98_02090 PF07690 Major Facilitator Superfamily CLM98_02100 PF01019 Gamma-glutamyltranspeptidase CLM98_02105 PF01425 Amidase CLM98_02110 PF01156 Inosine-uridine preferring nucleoside hydrolase CLM98_02115 PF00962 Adenosine/AMP deaminase CLM98_02120 PF00860 Permease family CLM98_02130 PF00111 2Fe-2S iron-sulfur cluster binding domain CLM98_02130 PF00970 Oxidoreductase FAD-binding domain CLM98_02135 PF00355 Rieske [2Fe-2S] domain CLM98_02140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_02140 PF03466 LysR substrate binding domain CLM98_02145 PF01026 TatD related DNase CLM98_02160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_02160 PF03466 LysR substrate binding domain CLM98_02165 PF07690 Major Facilitator Superfamily CLM98_02170 PF13411 MerR HTH family regulatory protein CLM98_02175 PF12697 Alpha/beta hydrolase family CLM98_02180 PF02146 Sir2 family CLM98_02185 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CLM98_02190 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CLM98_02190 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CLM98_02200 PF00551 Formyl transferase CLM98_02200 PF01842 ACT domain CLM98_02205 PF00072 Response regulator receiver domain CLM98_02205 PF00486 Transcriptional regulatory protein, C terminal CLM98_02210 PF00512 His Kinase A (phospho-acceptor) domain CLM98_02210 PF00672 HAMP domain CLM98_02210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_02215 PF16576 CLM98_02215 CLM98_02220 PF00873 AcrB/AcrD/AcrF family CLM98_02225 PF02321 Outer membrane efflux protein CLM98_02235 PF02219 Methylenetetrahydrofolate reductase CLM98_02240 PF02677 CLM98_02240 CLM98_02245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_02245 PF03466 LysR substrate binding domain CLM98_02250 PF03358 NADPH-dependent FMN reductase CLM98_02255 PF08908 CLM98_02255 CLM98_02260 PF01717 Cobalamin-independent synthase, Catalytic domain CLM98_02265 PF03812 CLM98_02265 CLM98_02270 PF07396 Phosphate-selective porin O and P CLM98_02280 PF05368 NmrA-like family CLM98_02285 PF01638 HxlR-like helix-turn-helix CLM98_02315 PF00589 Phage integrase family CLM98_02315 PF13495 Phage integrase, N-terminal SAM-like domain CLM98_02320 PF00920 Dehydratase family CLM98_02325 PF00150 Cellulase (glycosyl hydrolase family 5) CLM98_02330 PF03692 CLM98_02330 CLM98_02335 PF00132 Bacterial transferase hexapeptide (six repeats) CLM98_02345 PF07690 Major Facilitator Superfamily CLM98_02350 PF11871 CLM98_02350 CLM98_02350 PF13487 HD domain CLM98_02355 PF12802 MarR family CLM98_02360 PF13557 CLM98_02360 CLM98_02365 PF00106 short chain dehydrogenase CLM98_02365 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_02370 PF00171 Aldehyde dehydrogenase family CLM98_02375 PF02311 AraC-like ligand binding domain CLM98_02375 PF12833 Helix-turn-helix domain CLM98_02380 PF01494 FAD binding domain CLM98_02385 PF12680 SnoaL-like domain CLM98_02390 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLM98_02390 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLM98_02395 PF00230 Major intrinsic protein CLM98_02400 PF01266 FAD dependent oxidoreductase CLM98_02400 PF16901 CLM98_02400 CLM98_02405 PF00455 CLM98_02405 CLM98_02405 PF08220 DeoR-like helix-turn-helix domain CLM98_02410 PF00111 2Fe-2S iron-sulfur cluster binding domain CLM98_02410 PF00175 Oxidoreductase NAD-binding domain CLM98_02410 PF00970 Oxidoreductase FAD-binding domain CLM98_02415 PF00355 Rieske [2Fe-2S] domain CLM98_02420 PF01144 Coenzyme A transferase CLM98_02425 PF01144 Coenzyme A transferase CLM98_02430 PF00108 Thiolase, N-terminal domain CLM98_02430 PF02803 Thiolase, C-terminal domain CLM98_02435 PF00775 Dioxygenase CLM98_02435 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CLM98_02440 PF00775 Dioxygenase CLM98_02445 PF00206 Lyase CLM98_02445 PF10397 Adenylosuccinate lyase C-terminus CLM98_02450 PF00561 alpha/beta hydrolase fold CLM98_02455 PF02627 Carboxymuconolactone decarboxylase family CLM98_02460 PF12146 Putative lysophospholipase CLM98_02465 PF01614 Bacterial transcriptional regulator CLM98_02465 PF09339 IclR helix-turn-helix domain CLM98_02470 PF01163 RIO1 family CLM98_02475 PF07859 alpha/beta hydrolase fold CLM98_02480 PF10677 CLM98_02480 CLM98_02485 PF01134 Glucose inhibited division protein A CLM98_02485 PF13932 GidA associated domain 3 CLM98_02495 PF00291 Pyridoxal-phosphate dependent enzyme CLM98_02500 PF02698 DUF218 domain CLM98_02505 PF12680 SnoaL-like domain CLM98_02510 PF05118 Aspartyl/Asparaginyl beta-hydroxylase CLM98_02515 PF08241 Methyltransferase domain CLM98_02520 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_02525 PF12697 Alpha/beta hydrolase family CLM98_02535 PF00155 Aminotransferase class I and II CLM98_02540 PF04055 Radical SAM superfamily CLM98_02540 PF06968 Biotin and Thiamin Synthesis associated domain CLM98_02545 PF00156 Phosphoribosyl transferase domain CLM98_02550 PF01040 UbiA prenyltransferase family CLM98_02575 PF05819 CLM98_02575 CLM98_02590 PF05932 Tir chaperone protein (CesT) family CLM98_02615 PF01313 CLM98_02615 CLM98_02620 PF00813 CLM98_02620 CLM98_02625 PF01052 Surface presentation of antigens (SPOA) CLM98_02630 PF09483 CLM98_02630 CLM98_02635 PF00771 FHIPEP family CLM98_02640 PF01312 FlhB HrpN YscU SpaS Family CLM98_02645 PF09613 CLM98_02645 CLM98_02650 PF09487 CLM98_02650 CLM98_02655 PF01514 Secretory protein of YscJ/FliF family CLM98_02660 PF09502 CLM98_02660 CLM98_02665 PF02108 CLM98_02665 CLM98_02670 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLM98_02670 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLM98_02675 PF09486 CLM98_02675 CLM98_02680 PF01311 CLM98_02680 CLM98_02685 PF00263 CLM98_02685 CLM98_02685 PF03958 Bacterial type II/III secretion system short domain CLM98_02695 PF01464 Transglycosylase SLT domain CLM98_02705 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CLM98_02710 PF00924 Mechanosensitive ion channel CLM98_02710 PF12607 CLM98_02710 CLM98_02715 PF00884 Sulfatase CLM98_02725 PF03109 CLM98_02725 CLM98_02730 PF05661 CLM98_02730 CLM98_02735 PF00990 GGDEF domain CLM98_02740 PF00534 Glycosyl transferases group 1 CLM98_02740 PF08323 Starch synthase catalytic domain CLM98_02745 PF00128 Alpha amylase, catalytic domain CLM98_02745 PF02806 Alpha amylase, C-terminal all-beta domain CLM98_02745 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CLM98_02750 PF00128 Alpha amylase, catalytic domain CLM98_02750 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CLM98_02750 PF11941 Domain of unknown function (DUF3459) CLM98_02755 PF02446 4-alpha-glucanotransferase CLM98_02760 PF00128 Alpha amylase, catalytic domain CLM98_02765 PF11154 CLM98_02765 CLM98_02770 PF00128 Alpha amylase, catalytic domain CLM98_02770 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CLM98_02775 PF13460 NADH(P)-binding CLM98_02780 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_02785 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_02795 PF00890 FAD binding domain CLM98_02795 PF13454 FAD-NAD(P)-binding CLM98_02800 PF06903 CLM98_02800 CLM98_02805 PF02321 Outer membrane efflux protein CLM98_02810 PF00440 Bacterial regulatory proteins, tetR family CLM98_02820 PF00873 AcrB/AcrD/AcrF family CLM98_02825 PF00106 short chain dehydrogenase CLM98_02835 PF00270 DEAD/DEAH box helicase CLM98_02835 PF00271 Helicase conserved C-terminal domain CLM98_02840 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CLM98_02840 PF00364 Biotin-requiring enzyme CLM98_02840 PF02817 e3 binding domain CLM98_02845 PF07653 Variant SH3 domain CLM98_02850 PF02779 Transketolase, pyrimidine binding domain CLM98_02850 PF02780 Transketolase, C-terminal domain CLM98_02855 PF00676 Dehydrogenase E1 component CLM98_02860 PF00932 Lamin Tail Domain CLM98_02860 PF03160 Calx-beta domain CLM98_02860 PF03372 Endonuclease/Exonuclease/phosphatase family CLM98_02865 PF03301 Tryptophan 2,3-dioxygenase CLM98_02870 PF00854 POT family CLM98_02875 PF13899 Thioredoxin-like CLM98_02880 PF12802 MarR family CLM98_02885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLM98_02885 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal CLM98_02895 PF04209 homogentisate 1,2-dioxygenase CLM98_02915 PF03334 CLM98_02915 CLM98_02920 PF04066 CLM98_02920 CLM98_02925 PF01899 CLM98_02925 CLM98_02930 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CLM98_02935 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CLM98_02940 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CLM98_02940 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CLM98_02940 PF04039 CLM98_02940 CLM98_02940 PF13244 CLM98_02940 CLM98_02945 PF01370 NAD dependent epimerase/dehydratase family CLM98_02950 PF06127 CLM98_02950 CLM98_02965 PF00182 Chitinase class I CLM98_02965 PF01471 Putative peptidoglycan binding domain CLM98_02965 PF01551 Peptidase family M23 CLM98_02985 PF01259 SAICAR synthetase CLM98_02990 PF00226 DnaJ domain CLM98_02995 PF13505 Outer membrane protein beta-barrel domain CLM98_03000 PF00834 Ribulose-phosphate 3 epimerase family CLM98_03005 PF00583 Acetyltransferase (GNAT) family CLM98_03010 PF00781 Diacylglycerol kinase catalytic domain CLM98_03015 PF00425 chorismate binding enzyme CLM98_03015 PF04715 Anthranilate synthase component I, N terminal region CLM98_03020 PF01212 Beta-eliminating lyase CLM98_03025 PF00117 Glutamine amidotransferase class-I CLM98_03030 PF01613 Flavin reductase like domain CLM98_03035 PF00591 Glycosyl transferase family, a/b domain CLM98_03035 PF02885 Glycosyl transferase family, helical bundle domain CLM98_03040 PF00218 Indole-3-glycerol phosphate synthase CLM98_03045 PF12710 haloacid dehalogenase-like hydrolase CLM98_03050 PF00027 Cyclic nucleotide-binding domain CLM98_03050 PF00325 Bacterial regulatory proteins, crp family CLM98_03055 PF02675 S-adenosylmethionine decarboxylase CLM98_03060 PF00893 Small Multidrug Resistance protein CLM98_03065 PF03232 CLM98_03065 CLM98_03070 PF00572 Ribosomal protein L13 CLM98_03075 PF00380 Ribosomal protein S9/S16 CLM98_03090 PF00293 NUDIX domain CLM98_03095 PF04324 BFD-like [2Fe-2S] binding domain CLM98_03100 PF00210 Ferritin-like domain CLM98_03105 PF00072 Response regulator receiver domain CLM98_03105 PF00512 His Kinase A (phospho-acceptor) domain CLM98_03105 PF01627 Hpt domain CLM98_03105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_03110 PF00072 Response regulator receiver domain CLM98_03110 PF00563 EAL domain CLM98_03110 PF00990 GGDEF domain CLM98_03115 PF13548 CLM98_03115 CLM98_03125 PF04519 CLM98_03125 CLM98_03130 PF01521 Iron-sulphur cluster biosynthesis CLM98_03140 PF03583 Secretory lipase CLM98_03145 PF01609 Transposase DDE domain CLM98_03155 PF00293 NUDIX domain CLM98_03155 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CLM98_03155 PF09297 NADH pyrophosphatase zinc ribbon domain CLM98_03160 PF03186 CLM98_03160 CLM98_03165 PF10825 CLM98_03165 CLM98_03170 PF04505 CLM98_03170 CLM98_03180 PF01553 Acyltransferase CLM98_03180 PF07690 Major Facilitator Superfamily CLM98_03185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_03185 PF03466 LysR substrate binding domain CLM98_03190 PF07690 Major Facilitator Superfamily CLM98_03195 PF12805 CLM98_03195 CLM98_03195 PF13515 CLM98_03195 CLM98_03205 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CLM98_03205 PF02843 Phosphoribosylglycinamide synthetase, C domain CLM98_03205 PF02844 Phosphoribosylglycinamide synthetase, N domain CLM98_03215 PF01808 AICARFT/IMPCHase bienzyme CLM98_03215 PF02142 MGS-like domain CLM98_03220 PF01066 CDP-alcohol phosphatidyltransferase CLM98_03225 PF12146 Putative lysophospholipase CLM98_03225 PF12147 CLM98_03225 CLM98_03230 PF00782 Dual specificity phosphatase, catalytic domain CLM98_03230 PF14378 CLM98_03230 CLM98_03245 PF01066 CDP-alcohol phosphatidyltransferase CLM98_03250 PF01553 Acyltransferase CLM98_03255 PF01148 Cytidylyltransferase family CLM98_03260 PF02954 Bacterial regulatory protein, Fis family CLM98_03265 PF11906 CLM98_03265 CLM98_03270 PF01381 Helix-turn-helix CLM98_03280 PF06325 Ribosomal protein L11 methyltransferase (PrmA) CLM98_03305 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain CLM98_03305 PF02785 Biotin carboxylase C-terminal domain CLM98_03305 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLM98_03315 PF00364 Biotin-requiring enzyme CLM98_03320 PF01220 Dehydroquinase class II CLM98_03325 PF02683 CLM98_03325 CLM98_03325 PF11412 Disulphide bond corrector protein DsbC CLM98_03325 PF13899 Thioredoxin-like CLM98_03330 PF03091 CutA1 divalent ion tolerance protein CLM98_03335 PF12625 CLM98_03335 CLM98_03335 PF12833 Helix-turn-helix domain CLM98_03345 PF01852 START domain CLM98_03360 PF00106 short chain dehydrogenase CLM98_03365 PF00932 Lamin Tail Domain CLM98_03365 PF04231 Endonuclease I CLM98_03365 PF13205 Bacterial Ig-like domain CLM98_03375 PF00166 Chaperonin 10 Kd subunit CLM98_03380 PF00118 TCP-1/cpn60 chaperonin family CLM98_03390 PF00593 TonB dependent receptor CLM98_03390 PF07715 TonB-dependent Receptor Plug Domain CLM98_03395 PF00793 DAHP synthetase I family CLM98_03410 PF08450 SMP-30/Gluconolaconase/LRE-like region CLM98_03420 PF03710 Glutamate-ammonia ligase adenylyltransferase CLM98_03420 PF08335 GlnD PII-uridylyltransferase CLM98_03425 PF02592 CLM98_03425 CLM98_03435 PF00082 Subtilase family CLM98_03435 PF09286 Pro-kumamolisin, activation domain CLM98_03440 PF06258 CLM98_03440 CLM98_03445 PF00881 Nitroreductase family CLM98_03450 PF04264 YceI-like domain CLM98_03460 PF00328 Histidine phosphatase superfamily (branch 2) CLM98_03465 PF04954 Siderophore-interacting protein CLM98_03465 PF08021 Siderophore-interacting FAD-binding domain CLM98_03470 PF03551 Transcriptional regulator PadR-like family CLM98_03475 PF16957 CLM98_03475 CLM98_03480 PF06857 CLM98_03480 CLM98_03485 PF01039 Carboxyl transferase domain CLM98_03490 PF06833 Malonate decarboxylase gamma subunit (MdcE) CLM98_03495 PF10620 CLM98_03495 CLM98_03500 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CLM98_03505 PF00698 Acyl transferase domain CLM98_03510 PF03600 Citrate transporter CLM98_03510 PF07158 CLM98_03510 CLM98_03515 PF00392 Bacterial regulatory proteins, gntR family CLM98_03515 PF07729 FCD domain CLM98_03520 PF13419 Haloacid dehalogenase-like hydrolase CLM98_03525 PF01740 STAS domain CLM98_03530 PF13581 Histidine kinase-like ATPase domain CLM98_03535 PF00672 HAMP domain CLM98_03535 PF02743 Cache domain CLM98_03535 PF07228 Stage II sporulation protein E (SpoIIE) CLM98_03545 PF01764 Lipase (class 3) CLM98_03550 PF07745 Glycosyl hydrolase family 53 CLM98_03555 PF00456 Transketolase, thiamine diphosphate binding domain CLM98_03560 PF00145 C-5 cytosine-specific DNA methylase CLM98_03570 PF00106 short chain dehydrogenase CLM98_03575 PF12833 Helix-turn-helix domain CLM98_03575 PF12852 Cupin CLM98_03585 PF00106 short chain dehydrogenase CLM98_03585 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_03590 PF01145 SPFH domain / Band 7 family CLM98_03595 PF13409 Glutathione S-transferase, N-terminal domain CLM98_03595 PF13410 Glutathione S-transferase, C-terminal domain CLM98_03600 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLM98_03605 PF13548 CLM98_03605 CLM98_03615 PF05708 Orthopoxvirus protein of unknown function (DUF830) CLM98_03620 PF12823 CLM98_03620 CLM98_03630 PF00326 Prolyl oligopeptidase family CLM98_03630 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CLM98_03635 PF07759 CLM98_03635 CLM98_03645 PF00990 GGDEF domain CLM98_03670 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CLM98_03675 PF00892 EamA-like transporter family CLM98_03680 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLM98_03690 PF00324 Amino acid permease CLM98_03705 PF01987 Mitochondrial biogenesis AIM24 CLM98_03710 PF01204 Trehalase CLM98_03720 PF01904 Protein of unknown function DUF72 CLM98_03725 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CLM98_03725 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CLM98_03750 PF01590 GAF domain CLM98_03755 PF00675 Insulinase (Peptidase family M16) CLM98_03755 PF05193 Peptidase M16 inactive domain CLM98_03760 PF00990 GGDEF domain CLM98_03760 PF01590 GAF domain CLM98_03760 PF08447 PAS fold CLM98_03760 PF08448 PAS fold CLM98_03765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_03765 PF00672 HAMP domain CLM98_03765 PF17200 CLM98_03765 CLM98_03770 PF00150 Cellulase (glycosyl hydrolase family 5) CLM98_03770 PF00553 Cellulose binding domain CLM98_03775 PF00916 CLM98_03775 CLM98_03775 PF01740 STAS domain CLM98_03785 PF00990 GGDEF domain CLM98_03790 PF02225 PA domain CLM98_03790 PF04389 Peptidase family M28 CLM98_03805 PF13632 Glycosyl transferase family group 2 CLM98_03810 PF02230 Phospholipase/Carboxylesterase CLM98_03815 PF06580 CLM98_03815 CLM98_03820 PF00072 Response regulator receiver domain CLM98_03820 PF04397 LytTr DNA-binding domain CLM98_03825 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CLM98_03825 PF03900 Porphobilinogen deaminase, C-terminal domain CLM98_03830 PF04338 Protein of unknown function, DUF481 CLM98_03840 PF08279 HTH domain CLM98_03840 PF13280 CLM98_03840 CLM98_03845 PF08212 Lipocalin-like domain CLM98_03855 PF00326 Prolyl oligopeptidase family CLM98_03855 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CLM98_03870 PF00326 Prolyl oligopeptidase family CLM98_03870 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CLM98_03875 PF04304 CLM98_03875 CLM98_03880 PF13627 CLM98_03880 CLM98_03885 PF01678 Diaminopimelate epimerase CLM98_03890 PF04340 Protein of unknown function, DUF484 CLM98_03895 PF00589 Phage integrase family CLM98_03895 PF02899 Phage integrase, N-terminal SAM-like domain CLM98_03900 PF00227 Proteasome subunit CLM98_03905 PF00004 ATPase family associated with various cellular activities (AAA) CLM98_03905 PF07724 AAA domain (Cdc48 subfamily) CLM98_03905 PF10431 C-terminal, D2-small domain, of ClpB protein CLM98_03910 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLM98_03915 PF13673 Acetyltransferase (GNAT) domain CLM98_03920 PF16576 CLM98_03920 CLM98_03925 PF07690 Major Facilitator Superfamily CLM98_03930 PF01209 ubiE/COQ5 methyltransferase family CLM98_03935 PF00990 GGDEF domain CLM98_03940 PF01433 Peptidase family M1 CLM98_03940 PF09127 Leukotriene A4 hydrolase, C-terminal CLM98_03955 PF00702 haloacid dehalogenase-like hydrolase CLM98_03960 PF13360 PQQ-like domain CLM98_03960 PF13570 PQQ-like domain CLM98_03965 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLM98_03965 PF12796 Ankyrin repeats (3 copies) CLM98_03965 PF13857 Ankyrin repeats (many copies) CLM98_03970 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLM98_03975 PF10282 Lactonase, 7-bladed beta-propeller CLM98_03980 PF00107 Zinc-binding dehydrogenase CLM98_03980 PF08240 Alcohol dehydrogenase GroES-like domain CLM98_03985 PF00593 TonB dependent receptor CLM98_03985 PF07715 TonB-dependent Receptor Plug Domain CLM98_03990 PF00158 Sigma-54 interaction domain CLM98_03990 PF01590 GAF domain CLM98_03990 PF02954 Bacterial regulatory protein, Fis family CLM98_03995 PF00294 pfkB family carbohydrate kinase CLM98_04000 PF06723 MreB/Mbl protein CLM98_04005 PF04085 rod shape-determining protein MreC CLM98_04010 PF04093 CLM98_04010 CLM98_04015 PF00905 Penicillin binding protein transpeptidase domain CLM98_04015 PF03717 Penicillin-binding Protein dimerisation domain CLM98_04020 PF01098 CLM98_04020 CLM98_04025 PF00295 Glycosyl hydrolases family 28 CLM98_04030 PF13406 Transglycosylase SLT domain CLM98_04035 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel CLM98_04035 PF05036 Sporulation related domain CLM98_04045 PF00768 D-alanyl-D-alanine carboxypeptidase CLM98_04045 PF07943 Penicillin-binding protein 5, C-terminal domain CLM98_04050 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) CLM98_04055 PF04359 Protein of unknown function (DUF493) CLM98_04060 PF03099 Biotin/lipoate A/B protein ligase family CLM98_04065 PF04055 Radical SAM superfamily CLM98_04065 PF16881 CLM98_04065 CLM98_04070 PF00595 PDZ domain (Also known as DHR or GLGF) CLM98_04070 PF03572 Peptidase family S41 CLM98_04070 PF11818 CLM98_04070 CLM98_04075 PF01925 CLM98_04075 CLM98_04080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_04080 PF03466 LysR substrate binding domain CLM98_04085 PF03372 Endonuclease/Exonuclease/phosphatase family CLM98_04090 PF00293 NUDIX domain CLM98_04090 PF01467 Cytidylyltransferase CLM98_04095 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CLM98_04105 PF01555 DNA methylase CLM98_04110 PF10001 CLM98_04110 CLM98_04115 PF05433 CLM98_04115 CLM98_04125 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CLM98_04125 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CLM98_04130 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLM98_04130 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CLM98_04135 PF04972 BON domain CLM98_04140 PF00512 His Kinase A (phospho-acceptor) domain CLM98_04140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_04140 PF05227 CHASE3 domain CLM98_04140 PF13188 PAS domain CLM98_04145 PF00072 Response regulator receiver domain CLM98_04150 PF00072 Response regulator receiver domain CLM98_04150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_04155 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CLM98_04160 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_04165 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase CLM98_04175 PF00593 TonB dependent receptor CLM98_04175 PF07715 TonB-dependent Receptor Plug Domain CLM98_04185 PF13640 2OG-Fe(II) oxygenase superfamily CLM98_04195 PF00593 TonB dependent receptor CLM98_04195 PF07715 TonB-dependent Receptor Plug Domain CLM98_04200 PF11356 Type IV pilus biogenesis CLM98_04200 PF13180 PDZ domain CLM98_04205 PF00263 CLM98_04205 CLM98_04205 PF03958 Bacterial type II/III secretion system short domain CLM98_04210 PF00437 Type II/IV secretion system protein CLM98_04215 PF00482 Type II secretion system (T2SS), protein F CLM98_04220 PF07963 Prokaryotic N-terminal methylation motif CLM98_04220 PF08334 Type II secretion system (T2SS), protein G CLM98_04225 PF07963 Prokaryotic N-terminal methylation motif CLM98_04225 PF12019 Type II transport protein GspH CLM98_04230 PF02501 Type II secretion system (T2SS), protein I CLM98_04230 PF07963 Prokaryotic N-terminal methylation motif CLM98_04235 PF07963 Prokaryotic N-terminal methylation motif CLM98_04235 PF11612 Type II secretion system (T2SS), protein J CLM98_04240 PF03934 Type II secretion system (T2SS), protein K CLM98_04245 PF05134 Type II secretion system (T2SS), protein L CLM98_04250 PF04612 Type II secretion system (T2SS), protein M CLM98_04255 PF01203 CLM98_04255 CLM98_04260 PF00593 TonB dependent receptor CLM98_04260 PF07715 TonB-dependent Receptor Plug Domain CLM98_04270 PF05089 Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain CLM98_04270 PF12971 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain CLM98_04270 PF12972 Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain CLM98_04275 PF07786 CLM98_04275 CLM98_04280 PF00392 Bacterial regulatory proteins, gntR family CLM98_04280 PF07702 UTRA domain CLM98_04285 PF07690 Major Facilitator Superfamily CLM98_04290 PF00356 Bacterial regulatory proteins, lacI family CLM98_04290 PF13377 Periplasmic binding protein-like domain CLM98_04295 PF01380 SIS domain CLM98_04300 PF01979 Amidohydrolase family CLM98_04305 PF00593 TonB dependent receptor CLM98_04305 PF07715 TonB-dependent Receptor Plug Domain CLM98_04310 PF01743 Poly A polymerase head domain CLM98_04310 PF01966 HD domain CLM98_04310 PF12627 Probable RNA and SrmB- binding site of polymerase A CLM98_04315 PF00732 GMC oxidoreductase CLM98_04315 PF05199 GMC oxidoreductase CLM98_04320 PF00171 Aldehyde dehydrogenase family CLM98_04325 PF02028 BCCT family transporter CLM98_04335 PF03372 Endonuclease/Exonuclease/phosphatase family CLM98_04340 PF01323 DSBA-like thioredoxin domain CLM98_04345 PF13462 Thioredoxin CLM98_04350 PF00034 Cytochrome c CLM98_04355 PF01926 50S ribosome-binding GTPase CLM98_04360 PF00753 Metallo-beta-lactamase superfamily CLM98_04365 PF12833 Helix-turn-helix domain CLM98_04375 PF04107 Glutamate-cysteine ligase family 2(GCS2) CLM98_04380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_04385 PF00072 Response regulator receiver domain CLM98_04385 PF00486 Transcriptional regulatory protein, C terminal CLM98_04390 PF00534 Glycosyl transferases group 1 CLM98_04400 PF02583 Metal-sensitive transcriptional repressor CLM98_04405 PF00107 Zinc-binding dehydrogenase CLM98_04405 PF08240 Alcohol dehydrogenase GroES-like domain CLM98_04410 PF04828 Glutathione-dependent formaldehyde-activating enzyme CLM98_04415 PF00756 Putative esterase CLM98_04425 PF00155 Aminotransferase class I and II CLM98_04425 PF00392 Bacterial regulatory proteins, gntR family CLM98_04430 PF02567 Phenazine biosynthesis-like protein CLM98_04435 PF00892 EamA-like transporter family CLM98_04445 PF00005 ABC transporter CLM98_04445 PF12848 ABC transporter CLM98_04450 PF11776 Domain of unknown function (DUF3315) CLM98_04455 PF00464 Serine hydroxymethyltransferase CLM98_04460 PF03477 ATP cone domain CLM98_04465 PF00583 Acetyltransferase (GNAT) family CLM98_04470 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLM98_04470 PF01872 RibD C-terminal domain CLM98_04480 PF00677 Lumazine binding domain CLM98_04485 PF00925 GTP cyclohydrolase II CLM98_04485 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CLM98_04490 PF00885 6,7-dimethyl-8-ribityllumazine synthase CLM98_04495 PF01029 NusB family CLM98_04500 PF00586 AIR synthase related protein, N-terminal domain CLM98_04500 PF02769 AIR synthase related protein, C-terminal domain CLM98_04510 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CLM98_04510 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CLM98_04515 PF00646 F-box domain CLM98_04520 PF09604 CLM98_04520 CLM98_04525 PF03814 CLM98_04525 CLM98_04530 PF00122 E1-E2 ATPase CLM98_04530 PF00702 haloacid dehalogenase-like hydrolase CLM98_04535 PF02669 CLM98_04535 CLM98_04540 PF00512 His Kinase A (phospho-acceptor) domain CLM98_04540 PF00582 Universal stress protein family CLM98_04540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_04540 PF02702 Osmosensitive K+ channel His kinase sensor domain CLM98_04540 PF13493 Domain of unknown function (DUF4118) CLM98_04545 PF00072 Response regulator receiver domain CLM98_04545 PF00486 Transcriptional regulatory protein, C terminal CLM98_04560 PF01565 FAD binding domain CLM98_04560 PF02913 FAD linked oxidases, C-terminal domain CLM98_04565 PF04307 CLM98_04565 CLM98_04570 PF02021 Uncharacterised protein family UPF0102 CLM98_04575 PF04348 LppC putative lipoprotein CLM98_04580 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLM98_04590 PF07362 Post-segregation antitoxin CcdA CLM98_04595 PF05742 CLM98_04595 CLM98_04600 PF02381 MraZ protein CLM98_04605 PF01795 MraW methylase family CLM98_04610 PF04999 CLM98_04610 CLM98_04615 PF00905 Penicillin binding protein transpeptidase domain CLM98_04615 PF03717 Penicillin-binding Protein dimerisation domain CLM98_04620 PF01225 Mur ligase family, catalytic domain CLM98_04620 PF02875 Mur ligase family, glutamate ligase domain CLM98_04620 PF08245 Mur ligase middle domain CLM98_04625 PF01225 Mur ligase family, catalytic domain CLM98_04625 PF02875 Mur ligase family, glutamate ligase domain CLM98_04625 PF08245 Mur ligase middle domain CLM98_04630 PF00953 Glycosyl transferase family 4 CLM98_04635 PF01098 CLM98_04635 CLM98_04640 PF03033 Glycosyltransferase family 28 N-terminal domain CLM98_04640 PF04101 Glycosyltransferase family 28 C-terminal domain CLM98_04645 PF01225 Mur ligase family, catalytic domain CLM98_04645 PF02875 Mur ligase family, glutamate ligase domain CLM98_04645 PF08245 Mur ligase middle domain CLM98_04650 PF01820 D-ala D-ala ligase N-terminus CLM98_04650 PF07478 D-ala D-ala ligase C-terminus CLM98_04655 PF03799 Cell division protein FtsQ CLM98_04655 PF08478 POTRA domain, FtsQ-type CLM98_04660 PF02491 SHS2 domain inserted in FTSA CLM98_04660 PF14450 Cell division protein FtsA CLM98_04665 PF00091 Tubulin/FtsZ family, GTPase domain CLM98_04665 PF12327 FtsZ family, C-terminal domain CLM98_04670 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CLM98_04675 PF05258 CLM98_04675 CLM98_04680 PF01551 Peptidase family M23 CLM98_04685 PF01043 SecA preprotein cross-linking domain CLM98_04685 PF02810 SEC-C motif CLM98_04685 PF07516 SecA Wing and Scaffold domain CLM98_04685 PF07517 SecA DEAD-like domain CLM98_04690 PF00293 NUDIX domain CLM98_04690 PF02581 Thiamine monophosphate synthase/TENI CLM98_04700 PF02219 Methylenetetrahydrofolate reductase CLM98_04715 PF08240 Alcohol dehydrogenase GroES-like domain CLM98_04715 PF13602 Zinc-binding dehydrogenase CLM98_04720 PF00082 Subtilase family CLM98_04720 PF09286 Pro-kumamolisin, activation domain CLM98_04740 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLM98_04745 PF00128 Alpha amylase, catalytic domain CLM98_04755 PF09831 CLM98_04755 CLM98_04760 PF11539 Protein of unknown function (DUF3228) CLM98_04775 PF00685 Sulfotransferase domain CLM98_04780 PF13649 Methyltransferase domain CLM98_04785 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CLM98_04785 PF05221 S-adenosyl-L-homocysteine hydrolase CLM98_04790 PF00326 Prolyl oligopeptidase family CLM98_04795 PF00311 Phosphoenolpyruvate carboxylase CLM98_04800 PF00440 Bacterial regulatory proteins, tetR family CLM98_04805 PF13387 CLM98_04805 CLM98_04825 PF00593 TonB dependent receptor CLM98_04825 PF07715 TonB-dependent Receptor Plug Domain CLM98_04830 PF00328 Histidine phosphatase superfamily (branch 2) CLM98_04840 PF00438 S-adenosylmethionine synthetase, N-terminal domain CLM98_04840 PF02772 S-adenosylmethionine synthetase, central domain CLM98_04840 PF02773 S-adenosylmethionine synthetase, C-terminal domain CLM98_04845 PF04307 CLM98_04845 CLM98_04850 PF08241 Methyltransferase domain CLM98_04855 PF01207 Dihydrouridine synthase (Dus) CLM98_04860 PF08306 Glycosyl hydrolase family 98 CLM98_04860 PF08307 Glycosyl hydrolase family 98 C-terminal domain CLM98_04860 PF16990 CLM98_04860 CLM98_04865 PF00294 pfkB family carbohydrate kinase CLM98_04870 PF01773 Na+ dependent nucleoside transporter N-terminus CLM98_04870 PF07662 Na+ dependent nucleoside transporter C-terminus CLM98_04870 PF07670 Nucleoside recognition CLM98_04880 PF00248 Aldo/keto reductase family CLM98_04885 PF10636 Hemin uptake protein hemP CLM98_04890 PF00593 TonB dependent receptor CLM98_04890 PF07715 TonB-dependent Receptor Plug Domain CLM98_04905 PF04342 CLM98_04905 CLM98_04910 PF00528 Binding-protein-dependent transport system inner membrane component CLM98_04915 PF00005 ABC transporter CLM98_04920 PF13379 NMT1-like family CLM98_04925 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CLM98_04930 PF02687 CLM98_04930 CLM98_04935 PF00005 ABC transporter CLM98_04940 PF13472 GDSL-like Lipase/Acylhydrolase family CLM98_04945 PF00072 Response regulator receiver domain CLM98_04945 PF00486 Transcriptional regulatory protein, C terminal CLM98_04950 PF00512 His Kinase A (phospho-acceptor) domain CLM98_04950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_04960 PF13472 GDSL-like Lipase/Acylhydrolase family CLM98_04965 PF01219 Prokaryotic diacylglycerol kinase CLM98_04970 PF04011 LemA family CLM98_04975 PF04536 TLP18 CLM98_04980 PF04536 TLP18 CLM98_04985 PF01790 CLM98_04985 CLM98_04990 PF00303 Thymidylate synthase CLM98_05000 PF00186 Dihydrofolate reductase CLM98_05005 PF00158 Sigma-54 interaction domain CLM98_05010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLM98_05010 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CLM98_05015 PF00005 ABC transporter CLM98_05020 PF00528 Binding-protein-dependent transport system inner membrane component CLM98_05025 PF09084 NMT1/THI5 like CLM98_05030 PF00296 Luciferase-like monooxygenase CLM98_05035 PF03358 NADPH-dependent FMN reductase CLM98_05040 PF00593 TonB dependent receptor CLM98_05040 PF07715 TonB-dependent Receptor Plug Domain CLM98_05050 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CLM98_05055 PF00296 Luciferase-like monooxygenase CLM98_05060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLM98_05065 PF00528 Binding-protein-dependent transport system inner membrane component CLM98_05070 PF00528 Binding-protein-dependent transport system inner membrane component CLM98_05075 PF00005 ABC transporter CLM98_05075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLM98_05080 PF00149 Calcineurin-like phosphoesterase CLM98_05085 PF04379 Protein of unknown function (DUF525) CLM98_05090 PF00398 Ribosomal RNA adenine dimethylase CLM98_05095 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CLM98_05100 PF00639 PPIC-type PPIASE domain CLM98_05100 PF09312 SurA N-terminal domain CLM98_05100 PF13616 PPIC-type PPIASE domain CLM98_05105 PF03968 OstA-like protein CLM98_05105 PF04453 Organic solvent tolerance protein CLM98_05110 PF00850 Histone deacetylase domain CLM98_05115 PF01453 D-mannose binding lectin CLM98_05120 PF00850 Histone deacetylase domain CLM98_05125 PF01923 Cobalamin adenosyltransferase CLM98_05140 PF01494 FAD binding domain CLM98_05145 PF01494 FAD binding domain CLM98_05150 PF12697 Alpha/beta hydrolase family CLM98_05155 PF13577 SnoaL-like domain CLM98_05160 PF13557 CLM98_05160 CLM98_05165 PF00392 Bacterial regulatory proteins, gntR family CLM98_05165 PF07729 FCD domain CLM98_05170 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CLM98_05175 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit CLM98_05180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_05180 PF03466 LysR substrate binding domain CLM98_05185 PF00501 AMP-binding enzyme CLM98_05185 PF13193 AMP-binding enzyme C-terminal domain CLM98_05190 PF00171 Aldehyde dehydrogenase family CLM98_05195 PF00378 Enoyl-CoA hydratase/isomerase family CLM98_05200 PF12802 MarR family CLM98_05205 PF13202 EF hand CLM98_05215 PF08450 SMP-30/Gluconolaconase/LRE-like region CLM98_05220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLM98_05230 PF01728 FtsJ-like methyltransferase CLM98_05235 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLM98_05265 PF00749 tRNA synthetases class I (E and Q), catalytic domain CLM98_05265 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CLM98_05270 PF13409 Glutathione S-transferase, N-terminal domain CLM98_05275 PF09413 Domain of unknown function (DUF2007) CLM98_05280 PF00072 Response regulator receiver domain CLM98_05285 PF00072 Response regulator receiver domain CLM98_05285 PF00512 His Kinase A (phospho-acceptor) domain CLM98_05285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_05285 PF05227 CHASE3 domain CLM98_05290 PF00196 Bacterial regulatory proteins, luxR family CLM98_05295 PF08332 Calcium/calmodulin dependent protein kinase II Association CLM98_05300 PF01625 Peptide methionine sulfoxide reductase CLM98_05305 PF01965 DJ-1/PfpI family CLM98_05310 PF00923 Transaldolase CLM98_05315 PF01272 Transcription elongation factor, GreA/GreB, C-term CLM98_05315 PF14760 Rnk N-terminus CLM98_05325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_05325 PF03466 LysR substrate binding domain CLM98_05330 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM98_05330 PF13192 Thioredoxin domain CLM98_05335 PF00578 AhpC/TSA family CLM98_05335 PF10417 C-terminal domain of 1-Cys peroxiredoxin CLM98_05340 PF05175 Methyltransferase small domain CLM98_05345 PF00561 alpha/beta hydrolase fold CLM98_05350 PF05013 N-formylglutamate amidohydrolase CLM98_05355 PF00293 NUDIX domain CLM98_05360 PF01367 5'-3' exonuclease, C-terminal SAM fold CLM98_05360 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CLM98_05365 PF00881 Nitroreductase family CLM98_05370 PF07793 CLM98_05370 CLM98_05375 PF07793 CLM98_05375 CLM98_05380 PF12146 Putative lysophospholipase CLM98_05385 PF00440 Bacterial regulatory proteins, tetR family CLM98_05385 PF13305 WHG domain CLM98_05390 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CLM98_05390 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CLM98_05395 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CLM98_05400 PF11304 CLM98_05400 CLM98_05410 PF04542 Sigma-70 region 2 CLM98_05410 PF08281 Sigma-70, region 4 CLM98_05415 PF12769 Domain of unknown function (DUF3814) CLM98_05420 PF02233 NAD(P) transhydrogenase beta subunit CLM98_05430 PF01883 Domain of unknown function DUF59 CLM98_05435 PF01063 Aminotransferase class IV CLM98_05440 PF00082 Subtilase family CLM98_05440 PF04151 Bacterial pre-peptidase C-terminal domain CLM98_05450 PF00082 Subtilase family CLM98_05450 PF04151 Bacterial pre-peptidase C-terminal domain CLM98_05455 PF04073 Aminoacyl-tRNA editing domain CLM98_05460 PF00710 Asparaginase CLM98_05470 PF09842 CLM98_05470 CLM98_05475 PF03358 NADPH-dependent FMN reductase CLM98_05480 PF03631 CLM98_05480 CLM98_05485 PF00578 AhpC/TSA family CLM98_05500 PF03976 Polyphosphate kinase 2 (PPK2) CLM98_05505 PF00994 Probable molybdopterin binding domain CLM98_05510 PF13844 Glycosyl transferase family 41 CLM98_05510 PF14559 Tetratricopeptide repeat CLM98_05515 PF00472 RF-1 domain CLM98_05515 PF03462 PCRF domain CLM98_05525 PF13429 Tetratricopeptide repeat CLM98_05530 PF03550 Outer membrane lipoprotein LolB CLM98_05535 PF00288 GHMP kinases N terminal domain CLM98_05535 PF08544 GHMP kinases C terminal CLM98_05545 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CLM98_05545 PF14572 Phosphoribosyl synthetase-associated domain CLM98_05550 PF01386 Ribosomal L25p family CLM98_05550 PF14693 Ribosomal protein TL5, C-terminal domain CLM98_05555 PF01195 Peptidyl-tRNA hydrolase CLM98_05560 PF01926 50S ribosome-binding GTPase CLM98_05560 PF06071 Protein of unknown function (DUF933) CLM98_05580 PF00009 Elongation factor Tu GTP binding domain CLM98_05580 PF03143 Elongation factor Tu C-terminal domain CLM98_05580 PF03144 Elongation factor Tu domain 2 CLM98_05590 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CLM98_05595 PF00467 KOW motif CLM98_05595 PF02357 Transcription termination factor nusG CLM98_05600 PF00298 Ribosomal protein L11, RNA binding domain CLM98_05600 PF03946 Ribosomal protein L11, N-terminal domain CLM98_05605 PF00687 Ribosomal protein L1p/L10e family CLM98_05610 PF00466 Ribosomal protein L10 CLM98_05615 PF00542 Ribosomal protein L7/L12 C-terminal domain CLM98_05615 PF16320 CLM98_05615 CLM98_05620 PF00562 RNA polymerase Rpb2, domain 6 CLM98_05620 PF04560 RNA polymerase Rpb2, domain 7 CLM98_05620 PF04561 RNA polymerase Rpb2, domain 2 CLM98_05620 PF04563 RNA polymerase beta subunit CLM98_05620 PF04565 RNA polymerase Rpb2, domain 3 CLM98_05620 PF10385 RNA polymerase beta subunit external 1 domain CLM98_05625 PF00623 RNA polymerase Rpb1, domain 2 CLM98_05625 PF04983 RNA polymerase Rpb1, domain 3 CLM98_05625 PF04997 RNA polymerase Rpb1, domain 1 CLM98_05625 PF04998 RNA polymerase Rpb1, domain 5 CLM98_05625 PF05000 RNA polymerase Rpb1, domain 4 CLM98_05630 PF00164 Ribosomal protein S12/S23 CLM98_05635 PF00177 Ribosomal protein S7p/S5e CLM98_05640 PF00009 Elongation factor Tu GTP binding domain CLM98_05640 PF00679 Elongation factor G C-terminus CLM98_05640 PF03144 Elongation factor Tu domain 2 CLM98_05640 PF03764 Elongation factor G, domain IV CLM98_05640 PF14492 Elongation Factor G, domain II CLM98_05645 PF00009 Elongation factor Tu GTP binding domain CLM98_05645 PF03143 Elongation factor Tu C-terminal domain CLM98_05645 PF03144 Elongation factor Tu domain 2 CLM98_05650 PF00338 Ribosomal protein S10p/S20e CLM98_05655 PF00297 Ribosomal protein L3 CLM98_05660 PF00573 Ribosomal protein L4/L1 family CLM98_05665 PF00276 Ribosomal protein L23 CLM98_05670 PF00181 Ribosomal Proteins L2, RNA binding domain CLM98_05670 PF03947 Ribosomal Proteins L2, C-terminal domain CLM98_05675 PF00203 Ribosomal protein S19 CLM98_05680 PF00237 Ribosomal protein L22p/L17e CLM98_05685 PF00189 Ribosomal protein S3, C-terminal domain CLM98_05685 PF07650 KH domain CLM98_05690 PF00252 Ribosomal protein L16p/L10e CLM98_05695 PF00831 Ribosomal L29 protein CLM98_05700 PF00366 Ribosomal protein S17 CLM98_05705 PF00238 Ribosomal protein L14p/L23e CLM98_05710 PF00467 KOW motif CLM98_05710 PF17136 CLM98_05710 CLM98_05715 PF00281 Ribosomal protein L5 CLM98_05715 PF00673 ribosomal L5P family C-terminus CLM98_05720 PF00253 Ribosomal protein S14p/S29e CLM98_05725 PF00410 Ribosomal protein S8 CLM98_05730 PF00347 Ribosomal protein L6 CLM98_05735 PF00861 Ribosomal L18p/L5e family CLM98_05740 PF00333 Ribosomal protein S5, N-terminal domain CLM98_05740 PF03719 Ribosomal protein S5, C-terminal domain CLM98_05745 PF00327 Ribosomal protein L30p/L7e CLM98_05750 PF00828 Ribosomal protein L18e/L15 CLM98_05755 PF00344 SecY translocase CLM98_05760 PF00416 Ribosomal protein S13/S18 CLM98_05765 PF00411 Ribosomal protein S11 CLM98_05770 PF00163 Ribosomal protein S4/S9 N-terminal domain CLM98_05770 PF01479 S4 domain CLM98_05775 PF01000 RNA polymerase Rpb3/RpoA insert domain CLM98_05775 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CLM98_05775 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CLM98_05780 PF01196 Ribosomal protein L17 CLM98_05785 PF02600 Disulfide bond formation protein DsbB CLM98_05805 PF01474 Class-II DAHP synthetase family CLM98_05810 PF00924 Mechanosensitive ion channel CLM98_05815 PF01425 Amidase CLM98_05820 PF09900 CLM98_05820 CLM98_05825 PF00009 Elongation factor Tu GTP binding domain CLM98_05825 PF00679 Elongation factor G C-terminus CLM98_05825 PF03144 Elongation factor Tu domain 2 CLM98_05830 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CLM98_05835 PF00056 lactate/malate dehydrogenase, NAD binding domain CLM98_05835 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CLM98_05840 PF00043 Glutathione S-transferase, C-terminal domain CLM98_05840 PF02798 Glutathione S-transferase, N-terminal domain CLM98_05845 PF07486 Cell Wall Hydrolase CLM98_05860 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CLM98_05860 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM98_05865 PF08240 Alcohol dehydrogenase GroES-like domain CLM98_05865 PF13602 Zinc-binding dehydrogenase CLM98_05875 PF00691 OmpA family CLM98_05875 PF13505 Outer membrane protein beta-barrel domain CLM98_05885 PF00849 RNA pseudouridylate synthase CLM98_05885 PF01479 S4 domain CLM98_05895 PF00155 Aminotransferase class I and II CLM98_05900 PF13531 Bacterial extracellular solute-binding protein CLM98_05905 PF00528 Binding-protein-dependent transport system inner membrane component CLM98_05910 PF00528 Binding-protein-dependent transport system inner membrane component CLM98_05915 PF00005 ABC transporter CLM98_05915 PF12857 CLM98_05915 CLM98_05920 PF09694 CLM98_05920 CLM98_05925 PF00107 Zinc-binding dehydrogenase CLM98_05925 PF08240 Alcohol dehydrogenase GroES-like domain CLM98_05940 PF00593 TonB dependent receptor CLM98_05940 PF07715 TonB-dependent Receptor Plug Domain CLM98_05945 PF04185 Phosphoesterase family CLM98_05945 PF05506 CLM98_05945 CLM98_05955 PF10459 Peptidase S46 CLM98_05960 PF00300 Histidine phosphatase superfamily (branch 1) CLM98_05965 PF08245 Mur ligase middle domain CLM98_05970 PF05036 Sporulation related domain CLM98_05975 PF02674 CLM98_05975 CLM98_05980 PF13522 Glutamine amidotransferase domain CLM98_05985 PF04305 CLM98_05985 CLM98_05995 PF13688 Metallo-peptidase family M12 CLM98_06005 PF00149 Calcineurin-like phosphoesterase CLM98_06010 PF01569 PAP2 superfamily CLM98_06015 PF00534 Glycosyl transferases group 1 CLM98_06015 PF13439 Glycosyltransferase Family 4 CLM98_06020 PF02541 Ppx/GppA phosphatase family CLM98_06025 PF02503 Polyphosphate kinase middle domain CLM98_06025 PF13089 Polyphosphate kinase N-terminal domain CLM98_06025 PF13090 Polyphosphate kinase C-terminal domain CLM98_06030 PF00512 His Kinase A (phospho-acceptor) domain CLM98_06030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_06030 PF11808 CLM98_06030 CLM98_06035 PF00072 Response regulator receiver domain CLM98_06035 PF00486 Transcriptional regulatory protein, C terminal CLM98_06040 PF01435 Peptidase family M48 CLM98_06045 PF00462 Glutaredoxin CLM98_06050 PF02627 Carboxymuconolactone decarboxylase family CLM98_06055 PF00180 Isocitrate/isopropylmalate dehydrogenase CLM98_06060 PF12811 CLM98_06060 CLM98_06120 PF07275 Antirestriction protein (ArdA) CLM98_06145 PF00959 Phage lysozyme CLM98_06160 PF04550 CLM98_06160 CLM98_06205 PF05697 Bacterial trigger factor protein (TF) CLM98_06205 PF05698 Bacterial trigger factor protein (TF) C-terminus CLM98_06210 PF00574 Clp protease CLM98_06215 PF06689 ClpX C4-type zinc finger CLM98_06215 PF07724 AAA domain (Cdc48 subfamily) CLM98_06215 PF10431 C-terminal, D2-small domain, of ClpB protein CLM98_06220 PF00004 ATPase family associated with various cellular activities (AAA) CLM98_06220 PF02190 ATP-dependent protease La (LON) domain CLM98_06220 PF05362 Lon protease (S16) C-terminal proteolytic domain CLM98_06225 PF00216 Bacterial DNA-binding protein CLM98_06245 PF13145 PPIC-type PPIASE domain CLM98_06245 PF13616 PPIC-type PPIASE domain CLM98_06245 PF13623 CLM98_06245 CLM98_06250 PF01464 Transglycosylase SLT domain CLM98_06250 PF01476 LysM domain CLM98_06255 PF00753 Metallo-beta-lactamase superfamily CLM98_06255 PF16123 CLM98_06255 CLM98_06265 PF00075 RNase H CLM98_06270 PF00929 Exonuclease CLM98_06275 PF13672 Protein phosphatase 2C CLM98_06290 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CLM98_06295 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family CLM98_06300 PF12706 Beta-lactamase superfamily domain CLM98_06305 PF04055 Radical SAM superfamily CLM98_06305 PF06463 Molybdenum Cofactor Synthesis C CLM98_06305 PF13353 4Fe-4S single cluster domain CLM98_06315 PF01967 MoaC family CLM98_06320 PF02597 ThiS family CLM98_06325 PF02391 MoaE protein CLM98_06335 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_06345 PF03389 MobA/MobL family CLM98_06360 PF00589 Phage integrase family CLM98_06370 PF12169 DNA polymerase III subunits gamma and tau domain III CLM98_06370 PF12170 DNA polymerase III tau subunit V interacting with alpha CLM98_06370 PF13177 DNA polymerase III, delta subunit CLM98_06375 PF02575 YbaB/EbfC DNA-binding family CLM98_06380 PF02132 RecR protein CLM98_06380 PF13662 Toprim domain CLM98_06385 PF01230 HIT domain CLM98_06390 PF03843 CLM98_06390 CLM98_06395 PF01841 Transglutaminase-like superfamily CLM98_06395 PF11992 CLM98_06395 CLM98_06400 PF01882 CLM98_06400 CLM98_06405 PF07726 ATPase family associated with various cellular activities (AAA) CLM98_06410 PF13231 CLM98_06410 CLM98_06425 PF02545 Maf-like protein CLM98_06430 PF02620 CLM98_06430 CLM98_06435 PF01783 Ribosomal L32p protein family CLM98_06440 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLM98_06440 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLM98_06445 PF08670 CLM98_06445 CLM98_06450 PF00698 Acyl transferase domain CLM98_06455 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_06460 PF00550 Phosphopantetheine attachment site CLM98_06465 PF00109 Beta-ketoacyl synthase, N-terminal domain CLM98_06465 PF02801 Beta-ketoacyl synthase, C-terminal domain CLM98_06470 PF00425 chorismate binding enzyme CLM98_06475 PF02618 YceG-like family CLM98_06480 PF13177 DNA polymerase III, delta subunit CLM98_06485 PF07238 PilZ domain CLM98_06500 PF00158 Sigma-54 interaction domain CLM98_06500 PF02954 Bacterial regulatory protein, Fis family CLM98_06500 PF06506 Propionate catabolism activator CLM98_06505 PF13714 Phosphoenolpyruvate phosphomutase CLM98_06510 PF00285 Citrate synthase CLM98_06515 PF00330 Aconitase family (aconitate hydratase) CLM98_06515 PF00694 Aconitase C-terminal domain CLM98_06525 PF05016 Plasmid stabilisation system protein CLM98_06535 PF04303 PrpF protein CLM98_06540 PF00593 TonB dependent receptor CLM98_06540 PF07715 TonB-dependent Receptor Plug Domain CLM98_06545 PF01156 Inosine-uridine preferring nucleoside hydrolase CLM98_06555 PF00207 Alpha-2-macroglobulin family CLM98_06555 PF01835 MG2 domain CLM98_06555 PF07703 Alpha-2-macroglobulin family N-terminal region CLM98_06555 PF11974 Alpha-2-macroglobulin MG1 domain CLM98_06560 PF00593 TonB dependent receptor CLM98_06560 PF07715 TonB-dependent Receptor Plug Domain CLM98_06565 PF03009 Glycerophosphoryl diester phosphodiesterase family CLM98_06565 PF16387 CLM98_06565 CLM98_06575 PF00905 Penicillin binding protein transpeptidase domain CLM98_06575 PF00912 Transglycosylase CLM98_06575 PF06832 CLM98_06575 CLM98_06580 PF00210 Ferritin-like domain CLM98_06585 PF08534 Redoxin CLM98_06590 PF00011 Hsp20/alpha crystallin family CLM98_06595 PF00226 DnaJ domain CLM98_06595 PF01556 DnaJ C terminal domain CLM98_06600 PF00072 Response regulator receiver domain CLM98_06605 PF01145 SPFH domain / Band 7 family CLM98_06610 PF01145 SPFH domain / Band 7 family CLM98_06615 PF01797 Transposase IS200 like CLM98_06620 PF00709 Adenylosuccinate synthetase CLM98_06625 PF01433 Peptidase family M1 CLM98_06625 PF11838 ERAP1-like C-terminal domain CLM98_06630 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_06635 PF00440 Bacterial regulatory proteins, tetR family CLM98_06675 PF05016 Plasmid stabilisation system protein CLM98_06690 PF00069 Protein kinase domain CLM98_06705 PF00440 Bacterial regulatory proteins, tetR family CLM98_06710 PF00300 Histidine phosphatase superfamily (branch 1) CLM98_06715 PF01256 Carbohydrate kinase CLM98_06720 PF02055 O-Glycosyl hydrolase family 30 CLM98_06720 PF17189 CLM98_06720 CLM98_06725 PF00723 Glycosyl hydrolases family 15 CLM98_06730 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_06740 PF07971 Glycosyl hydrolase family 92 CLM98_06755 PF13532 2OG-Fe(II) oxygenase superfamily CLM98_06760 PF00027 Cyclic nucleotide-binding domain CLM98_06760 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM98_06765 PF02148 Zn-finger in ubiquitin-hydrolases and other protein CLM98_06770 PF00563 EAL domain CLM98_06775 PF13328 HD domain CLM98_06780 PF00005 ABC transporter CLM98_06785 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLM98_06785 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CLM98_06790 PF00941 FAD binding domain in molybdopterin dehydrogenase CLM98_06790 PF03450 CO dehydrogenase flavoprotein C-terminal domain CLM98_06795 PF00111 2Fe-2S iron-sulfur cluster binding domain CLM98_06795 PF01799 [2Fe-2S] binding domain CLM98_06800 PF05559 CLM98_06800 CLM98_06810 PF07883 Cupin domain CLM98_06820 PF02661 Fic/DOC family CLM98_06825 PF04014 Antidote-toxin recognition MazE CLM98_06830 PF00717 Peptidase S24-like CLM98_06830 PF01726 LexA DNA binding domain CLM98_06840 PF00817 impB/mucB/samB family CLM98_06845 PF02811 PHP domain CLM98_06845 PF07733 Bacterial DNA polymerase III alpha subunit CLM98_06845 PF14579 Helix-hairpin-helix motif CLM98_06855 PF00326 Prolyl oligopeptidase family CLM98_06860 PF08668 HDOD domain CLM98_06865 PF03169 CLM98_06865 CLM98_06870 PF13557 CLM98_06870 CLM98_06880 PF00326 Prolyl oligopeptidase family CLM98_06880 PF07676 WD40-like Beta Propeller Repeat CLM98_06895 PF08448 PAS fold CLM98_06895 PF12833 Helix-turn-helix domain CLM98_06915 PF00199 Catalase CLM98_06915 PF06628 Catalase-related immune-responsive CLM98_06920 PF00248 Aldo/keto reductase family CLM98_06925 PF00135 Carboxylesterase family CLM98_06930 PF02347 Glycine cleavage system P-protein CLM98_06935 PF07690 Major Facilitator Superfamily CLM98_06945 PF01401 Angiotensin-converting enzyme CLM98_06955 PF01569 PAP2 superfamily CLM98_06960 PF13231 CLM98_06960 CLM98_06965 PF00072 Response regulator receiver domain CLM98_06965 PF00486 Transcriptional regulatory protein, C terminal CLM98_06970 PF00512 His Kinase A (phospho-acceptor) domain CLM98_06970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_06980 PF03776 Septum formation topological specificity factor MinE CLM98_06985 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLM98_06990 PF03775 Septum formation inhibitor MinC, C-terminal domain CLM98_06990 PF05209 Septum formation inhibitor MinC, N-terminal domain CLM98_06995 PF00583 Acetyltransferase (GNAT) family CLM98_07005 PF07730 Histidine kinase CLM98_07010 PF00072 Response regulator receiver domain CLM98_07010 PF00196 Bacterial regulatory proteins, luxR family CLM98_07015 PF10604 Polyketide cyclase / dehydrase and lipid transport CLM98_07020 PF04241 CLM98_07020 CLM98_07025 PF00730 HhH-GPD superfamily base excision DNA repair protein CLM98_07030 PF02557 D-alanyl-D-alanine carboxypeptidase CLM98_07050 PF01145 SPFH domain / Band 7 family CLM98_07055 PF02222 ATP-grasp domain CLM98_07060 PF03372 Endonuclease/Exonuclease/phosphatase family CLM98_07065 PF04376 CLM98_07065 CLM98_07065 PF04377 CLM98_07065 CLM98_07070 PF13202 EF hand CLM98_07070 PF13499 EF-hand domain pair CLM98_07080 PF09413 Domain of unknown function (DUF2007) CLM98_07085 PF13622 Thioesterase-like superfamily CLM98_07090 PF00378 Enoyl-CoA hydratase/isomerase family CLM98_07095 PF04314 Protein of unknown function (DUF461) CLM98_07100 PF13279 Thioesterase-like superfamily CLM98_07105 PF00005 ABC transporter CLM98_07110 PF00829 Ribosomal prokaryotic L21 protein CLM98_07115 PF01016 Ribosomal L27 protein CLM98_07120 PF01018 GTP1/OBG CLM98_07120 PF01926 50S ribosome-binding GTPase CLM98_07125 PF01649 Ribosomal protein S20 CLM98_07130 PF03023 CLM98_07130 CLM98_07135 PF01687 Riboflavin kinase CLM98_07135 PF06574 FAD synthetase CLM98_07140 PF00133 tRNA synthetases class I (I, L, M and V) CLM98_07140 PF06827 Zinc finger found in FPG and IleRS CLM98_07140 PF08264 Anticodon-binding domain of tRNA CLM98_07145 PF01252 CLM98_07145 CLM98_07150 PF02401 LytB protein CLM98_07165 PF00115 Cytochrome C and Quinol oxidase polypeptide I CLM98_07170 PF00510 Cytochrome c oxidase subunit III CLM98_07175 PF03626 CLM98_07175 CLM98_07180 PF05299 M61 glycyl aminopeptidase CLM98_07180 PF07720 Tetratricopeptide repeat CLM98_07185 PF13481 AAA domain CLM98_07185 PF13541 Subunit ChlI of Mg-chelatase CLM98_07190 PF05656 CLM98_07190 CLM98_07195 PF00486 Transcriptional regulatory protein, C terminal CLM98_07200 PF12833 Helix-turn-helix domain CLM98_07205 PF00183 Hsp90 protein CLM98_07205 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_07220 PF01740 STAS domain CLM98_07220 PF14361 CLM98_07220 CLM98_07230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_07235 PF07228 Stage II sporulation protein E (SpoIIE) CLM98_07235 PF13581 Histidine kinase-like ATPase domain CLM98_07240 PF00512 His Kinase A (phospho-acceptor) domain CLM98_07240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_07245 PF00072 Response regulator receiver domain CLM98_07245 PF00512 His Kinase A (phospho-acceptor) domain CLM98_07245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_07245 PF08448 PAS fold CLM98_07250 PF04616 Glycosyl hydrolases family 43 CLM98_07255 PF00593 TonB dependent receptor CLM98_07255 PF07715 TonB-dependent Receptor Plug Domain CLM98_07260 PF00085 Thioredoxin CLM98_07265 PF07237 Protein of unknown function (DUF1428) CLM98_07270 PF00072 Response regulator receiver domain CLM98_07270 PF00512 His Kinase A (phospho-acceptor) domain CLM98_07270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_07275 PF01339 CheB methylesterase CLM98_07280 PF01739 CheR methyltransferase, SAM binding domain CLM98_07280 PF03705 CheR methyltransferase, all-alpha domain CLM98_07285 PF00072 Response regulator receiver domain CLM98_07285 PF00512 His Kinase A (phospho-acceptor) domain CLM98_07285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_07285 PF13185 GAF domain CLM98_07290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_07290 PF13426 PAS domain CLM98_07295 PF00072 Response regulator receiver domain CLM98_07300 PF00722 Glycosyl hydrolases family 16 CLM98_07305 PF06964 Alpha-L-arabinofuranosidase C-terminus CLM98_07310 PF01263 Aldose 1-epimerase CLM98_07315 PF01578 CLM98_07315 CLM98_07320 PF00448 SRP54-type protein, GTPase domain CLM98_07320 PF02881 SRP54-type protein, helical bundle domain CLM98_07320 PF02978 Signal peptide binding domain CLM98_07325 PF03060 Nitronate monooxygenase CLM98_07330 PF01063 Aminotransferase class IV CLM98_07335 PF00886 Ribosomal protein S16 CLM98_07340 PF01782 RimM N-terminal domain CLM98_07340 PF05239 PRC-barrel domain CLM98_07345 PF01746 tRNA (Guanine-1)-methyltransferase CLM98_07350 PF01245 Ribosomal protein L19 CLM98_07360 PF08279 HTH domain CLM98_07360 PF13280 CLM98_07360 CLM98_07365 PF00043 Glutathione S-transferase, C-terminal domain CLM98_07365 PF13417 Glutathione S-transferase, N-terminal domain CLM98_07370 PF01479 S4 domain CLM98_07375 PF00141 Peroxidase CLM98_07380 PF06078 Bacterial protein of unknown function (DUF937) CLM98_07385 PF00488 MutS domain V CLM98_07385 PF01624 MutS domain I CLM98_07385 PF05188 MutS domain II CLM98_07385 PF05190 MutS family domain IV CLM98_07385 PF05192 MutS domain III CLM98_07390 PF05593 CLM98_07390 CLM98_07400 PF14085 CLM98_07400 CLM98_07410 PF00754 F5/8 type C domain CLM98_07410 PF01120 Alpha-L-fucosidase CLM98_07420 PF00703 Glycosyl hydrolases family 2 CLM98_07420 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CLM98_07420 PF02837 Glycosyl hydrolases family 2, sugar binding domain CLM98_07420 PF16355 CLM98_07420 CLM98_07425 PF07745 Glycosyl hydrolase family 53 CLM98_07430 PF00593 TonB dependent receptor CLM98_07430 PF07715 TonB-dependent Receptor Plug Domain CLM98_07435 PF06114 Domain of unknown function (DUF955) CLM98_07435 PF09856 CLM98_07435 CLM98_07435 PF13560 Helix-turn-helix domain CLM98_07440 PF00171 Aldehyde dehydrogenase family CLM98_07445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLM98_07445 PF02770 Acyl-CoA dehydrogenase, middle domain CLM98_07445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLM98_07450 PF00378 Enoyl-CoA hydratase/isomerase family CLM98_07455 PF16113 CLM98_07455 CLM98_07460 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CLM98_07460 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CLM98_07465 PF01545 Cation efflux family CLM98_07470 PF00378 Enoyl-CoA hydratase/isomerase family CLM98_07470 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CLM98_07470 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CLM98_07475 PF04542 Sigma-70 region 2 CLM98_07475 PF08281 Sigma-70, region 4 CLM98_07480 PF03872 Anti sigma-E protein RseA, N-terminal domain CLM98_07485 PF13180 PDZ domain CLM98_07485 PF13365 Trypsin-like peptidase domain CLM98_07490 PF00009 Elongation factor Tu GTP binding domain CLM98_07490 PF00679 Elongation factor G C-terminus CLM98_07490 PF03144 Elongation factor Tu domain 2 CLM98_07490 PF06421 GTP-binding protein LepA C-terminus CLM98_07495 PF00717 Peptidase S24-like CLM98_07500 PF16137 CLM98_07500 CLM98_07505 PF00035 Double-stranded RNA binding motif CLM98_07505 PF14622 Ribonuclease-III-like CLM98_07515 PF02565 Recombination protein O C terminal CLM98_07515 PF11967 Recombination protein O N terminal CLM98_07520 PF00072 Response regulator receiver domain CLM98_07520 PF01627 Hpt domain CLM98_07525 PF05958 tRNA (Uracil-5-)-methyltransferase CLM98_07530 PF01928 CYTH domain CLM98_07535 PF01323 DSBA-like thioredoxin domain CLM98_07540 PF13450 NAD(P)-binding Rossmann-like domain CLM98_07545 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CLM98_07550 PF00933 Glycosyl hydrolase family 3 N terminal domain CLM98_07555 PF00156 Phosphoribosyl transferase domain CLM98_07560 PF01048 Phosphorylase superfamily CLM98_07565 PF00313 'Cold-shock' DNA-binding domain CLM98_07570 PF01494 FAD binding domain CLM98_07575 PF00149 Calcineurin-like phosphoesterase CLM98_07580 PF00270 DEAD/DEAH box helicase CLM98_07580 PF00271 Helicase conserved C-terminal domain CLM98_07580 PF08494 CLM98_07580 CLM98_07585 PF01068 ATP dependent DNA ligase domain CLM98_07585 PF04675 DNA ligase N terminus CLM98_07585 PF04679 ATP dependent DNA ligase C terminal region CLM98_07605 PF04519 CLM98_07605 CLM98_07610 PF00990 GGDEF domain CLM98_07610 PF05227 CHASE3 domain CLM98_07610 PF13185 GAF domain CLM98_07630 PF00108 Thiolase, N-terminal domain CLM98_07630 PF02803 Thiolase, C-terminal domain CLM98_07635 PF00082 Subtilase family CLM98_07635 PF03797 Autotransporter beta-domain CLM98_07635 PF12951 CLM98_07635 CLM98_07640 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CLM98_07640 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CLM98_07645 PF13640 2OG-Fe(II) oxygenase superfamily CLM98_07655 PF01863 Protein of unknown function DUF45 CLM98_07660 PF07043 CLM98_07660 CLM98_07665 PF10982 Protein of unknown function (DUF2789) CLM98_07670 PF01258 Prokaryotic dksA/traR C4-type zinc finger CLM98_07675 PF00924 Mechanosensitive ion channel CLM98_07685 PF06723 MreB/Mbl protein CLM98_07690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLM98_07695 PF01545 Cation efflux family CLM98_07700 PF03831 PhnA protein CLM98_07700 PF08274 PhnA Zinc-Ribbon CLM98_07710 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CLM98_07715 PF07690 Major Facilitator Superfamily CLM98_07725 PF09537 Domain of unknown function (DUF2383) CLM98_07730 PF13563 2'-5' RNA ligase superfamily CLM98_07740 PF09791 CLM98_07740 CLM98_07745 PF06057 Bacterial virulence protein (VirJ) CLM98_07750 PF03706 CLM98_07750 CLM98_07750 PF09924 Uncharacterized conserved protein (DUF2156) CLM98_07755 PF06197 CLM98_07755 CLM98_07760 PF01042 Endoribonuclease L-PSP CLM98_07765 PF02353 Mycolic acid cyclopropane synthetase CLM98_07770 PF06966 CLM98_07770 CLM98_07775 PF11086 CLM98_07775 CLM98_07780 PF02353 Mycolic acid cyclopropane synthetase CLM98_07785 PF07103 CLM98_07785 CLM98_07790 PF01593 Flavin containing amine oxidoreductase CLM98_07795 PF00487 CLM98_07795 CLM98_07800 PF10099 CLM98_07800 CLM98_07805 PF04542 Sigma-70 region 2 CLM98_07805 PF08281 Sigma-70, region 4 CLM98_07825 PF04060 Putative Fe-S cluster CLM98_07825 PF14697 4Fe-4S dicluster domain CLM98_07830 PF12710 haloacid dehalogenase-like hydrolase CLM98_07835 PF01588 Putative tRNA binding domain CLM98_07835 PF09334 tRNA synthetases class I (M) CLM98_07840 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) CLM98_07845 PF01433 Peptidase family M1 CLM98_07845 PF12679 CLM98_07845 CLM98_07850 PF00005 ABC transporter CLM98_07855 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLM98_07860 PF00324 Amino acid permease CLM98_07865 PF02574 Homocysteine S-methyltransferase CLM98_07870 PF05960 Bacterial protein of unknown function (DUF885) CLM98_07875 PF02592 CLM98_07875 CLM98_07880 PF04367 CLM98_07880 CLM98_07890 PF13372 Alginate export CLM98_07895 PF03551 Transcriptional regulator PadR-like family CLM98_07900 PF13796 CLM98_07900 CLM98_07905 PF06850 CLM98_07905 CLM98_07910 PF13489 Methyltransferase domain CLM98_07915 PF03653 CLM98_07915 CLM98_07925 PF14559 Tetratricopeptide repeat CLM98_07930 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CLM98_07935 PF01336 OB-fold nucleic acid binding domain CLM98_07935 PF02811 PHP domain CLM98_07935 PF07733 Bacterial DNA polymerase III alpha subunit CLM98_07935 PF14579 Helix-hairpin-helix motif CLM98_07940 PF01351 Ribonuclease HII CLM98_07945 PF02684 CLM98_07945 CLM98_07950 PF00132 Bacterial transferase hexapeptide (six repeats) CLM98_07950 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CLM98_07955 PF07977 FabA-like domain CLM98_07960 PF00132 Bacterial transferase hexapeptide (six repeats) CLM98_07960 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CLM98_07970 PF01103 Surface antigen CLM98_07970 PF07244 Surface antigen variable number repeat CLM98_07975 PF02163 Peptidase family M50 CLM98_07980 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CLM98_07980 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal CLM98_07980 PF13288 DXP reductoisomerase C-terminal domain CLM98_07985 PF01148 Cytidylyltransferase family CLM98_07990 PF01255 Putative undecaprenyl diphosphate synthase CLM98_07995 PF01765 Ribosome recycling factor CLM98_08000 PF00696 Amino acid kinase family CLM98_08005 PF00990 GGDEF domain CLM98_08005 PF08668 HDOD domain CLM98_08010 PF00889 Elongation factor TS CLM98_08015 PF00318 Ribosomal protein S2 CLM98_08020 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CLM98_08030 PF05229 CLM98_08030 CLM98_08035 PF00577 Outer membrane usher protein CLM98_08035 PF13953 PapC C-terminal domain CLM98_08040 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CLM98_08045 PF05229 CLM98_08045 CLM98_08050 PF00557 Metallopeptidase family M24 CLM98_08055 PF01909 Nucleotidyltransferase domain CLM98_08055 PF01966 HD domain CLM98_08055 PF08335 GlnD PII-uridylyltransferase CLM98_08060 PF00132 Bacterial transferase hexapeptide (six repeats) CLM98_08060 PF14602 Hexapeptide repeat of succinyl-transferase CLM98_08060 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CLM98_08065 PF03960 ArsC family CLM98_08070 PF01546 Peptidase family M20/M25/M40 CLM98_08070 PF07687 Peptidase dimerisation domain CLM98_08080 PF00733 Asparagine synthase CLM98_08080 PF13537 Glutamine amidotransferase domain CLM98_08085 PF13229 Right handed beta helix region CLM98_08090 PF00593 TonB dependent receptor CLM98_08090 PF07715 TonB-dependent Receptor Plug Domain CLM98_08105 PF00210 Ferritin-like domain CLM98_08110 PF05724 Thiopurine S-methyltransferase (TPMT) CLM98_08120 PF00521 DNA gyrase/topoisomerase IV, subunit A CLM98_08120 PF03989 DNA gyrase C-terminal domain, beta-propeller CLM98_08125 PF02311 AraC-like ligand binding domain CLM98_08125 PF12833 Helix-turn-helix domain CLM98_08130 PF01047 MarR family CLM98_08135 PF02321 Outer membrane efflux protein CLM98_08140 PF00529 HlyD family secretion protein CLM98_08140 PF16576 CLM98_08140 CLM98_08145 PF07690 Major Facilitator Superfamily CLM98_08155 PF00933 Glycosyl hydrolase family 3 N terminal domain CLM98_08155 PF01915 Glycosyl hydrolase family 3 C-terminal domain CLM98_08155 PF14310 Fibronectin type III-like domain CLM98_08160 PF00246 Zinc carboxypeptidase CLM98_08165 PF00854 POT family CLM98_08170 PF01694 Rhomboid family CLM98_08180 PF14542 GCN5-related N-acetyl-transferase CLM98_08190 PF01047 MarR family CLM98_08195 PF01432 Peptidase family M3 CLM98_08205 PF00255 Glutathione peroxidase CLM98_08210 PF00175 Oxidoreductase NAD-binding domain CLM98_08210 PF00970 Oxidoreductase FAD-binding domain CLM98_08215 PF00005 ABC transporter CLM98_08220 PF05681 CLM98_08220 CLM98_08220 PF05683 Fumarase C-terminus CLM98_08225 PF02798 Glutathione S-transferase, N-terminal domain CLM98_08225 PF14497 Glutathione S-transferase, C-terminal domain CLM98_08230 PF00484 Carbonic anhydrase CLM98_08235 PF02253 Phospholipase A1 CLM98_08240 PF04306 CLM98_08240 CLM98_08245 PF00313 'Cold-shock' DNA-binding domain CLM98_08250 PF05433 CLM98_08250 CLM98_08255 PF01322 Cytochrome C' CLM98_08260 PF00899 ThiF family CLM98_08275 PF05433 CLM98_08275 CLM98_08280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLM98_08280 PF02770 Acyl-CoA dehydrogenase, middle domain CLM98_08280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLM98_08285 PF01841 Transglutaminase-like superfamily CLM98_08285 PF12969 Domain of Unknown Function with PDB structure (DUF3857) CLM98_08290 PF00043 Glutathione S-transferase, C-terminal domain CLM98_08290 PF02798 Glutathione S-transferase, N-terminal domain CLM98_08300 PF00733 Asparagine synthase CLM98_08300 PF13537 Glutamine amidotransferase domain CLM98_08305 PF03358 NADPH-dependent FMN reductase CLM98_08310 PF00772 DnaB-like helicase N terminal domain CLM98_08310 PF03796 DnaB-like helicase C terminal domain CLM98_08315 PF00875 DNA photolyase CLM98_08315 PF03441 FAD binding domain of DNA photolyase CLM98_08325 PF00691 OmpA family CLM98_08325 PF13488 CLM98_08325 CLM98_08330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_08330 PF03466 LysR substrate binding domain CLM98_08340 PF00106 short chain dehydrogenase CLM98_08345 PF16576 CLM98_08345 CLM98_08350 PF00873 AcrB/AcrD/AcrF family CLM98_08355 PF00106 short chain dehydrogenase CLM98_08360 PF02321 Outer membrane efflux protein CLM98_08365 PF00990 GGDEF domain CLM98_08375 PF00990 GGDEF domain CLM98_08375 PF05227 CHASE3 domain CLM98_08375 PF13185 GAF domain CLM98_08380 PF00733 Asparagine synthase CLM98_08385 PF00733 Asparagine synthase CLM98_08395 PF01381 Helix-turn-helix CLM98_08400 PF06114 Domain of unknown function (DUF955) CLM98_08410 PF00816 H-NS histone family CLM98_08420 PF00589 Phage integrase family CLM98_08440 PF01381 Helix-turn-helix CLM98_08445 PF02661 Fic/DOC family CLM98_08470 PF03389 MobA/MobL family CLM98_08480 PF13910 CLM98_08480 CLM98_08485 PF00589 Phage integrase family CLM98_08495 PF00082 Subtilase family CLM98_08500 PF01668 SmpB protein CLM98_08505 PF03364 Polyketide cyclase / dehydrase and lipid transport CLM98_08510 PF03658 RnfH family Ubiquitin CLM98_08515 PF04355 SmpA / OmlA family CLM98_08520 PF01475 Ferric uptake regulator family CLM98_08525 PF02463 RecF/RecN/SMC N terminal domain CLM98_08530 PF01628 HrcA protein C terminal domain CLM98_08530 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CLM98_08535 PF01025 GrpE CLM98_08540 PF00012 Hsp70 protein CLM98_08545 PF00226 DnaJ domain CLM98_08545 PF00684 DnaJ central domain CLM98_08545 PF01556 DnaJ C terminal domain CLM98_08555 PF08543 Phosphomethylpyrimidine kinase CLM98_08560 PF01842 ACT domain CLM98_08560 PF02153 Prephenate dehydrogenase CLM98_08570 PF02321 Outer membrane efflux protein CLM98_08575 PF16576 CLM98_08575 CLM98_08585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_08585 PF03466 LysR substrate binding domain CLM98_08590 PF00005 ABC transporter CLM98_08590 PF00664 ABC transporter transmembrane region CLM98_08595 PF01205 Uncharacterized protein family UPF0029 CLM98_08595 PF09186 Domain of unknown function (DUF1949) CLM98_08600 PF03641 Possible lysine decarboxylase CLM98_08605 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLM98_08605 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM98_08610 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CLM98_08610 PF00364 Biotin-requiring enzyme CLM98_08610 PF02817 e3 binding domain CLM98_08615 PF00676 Dehydrogenase E1 component CLM98_08615 PF02779 Transketolase, pyrimidine binding domain CLM98_08615 PF16078 CLM98_08615 CLM98_08615 PF16870 CLM98_08615 CLM98_08620 PF13673 Acetyltransferase (GNAT) domain CLM98_08625 PF08007 Cupin superfamily protein CLM98_08630 PF11259 CLM98_08630 CLM98_08635 PF00206 Lyase CLM98_08635 PF08328 Adenylosuccinate lyase C-terminal CLM98_08640 PF00188 Cysteine-rich secretory protein family CLM98_08645 PF00571 CBS domain CLM98_08645 PF01595 CLM98_08645 CLM98_08645 PF03471 Transporter associated domain CLM98_08650 PF00206 Lyase CLM98_08650 PF10415 Fumarase C C-terminus CLM98_08660 PF11101 CLM98_08660 CLM98_08675 PF00005 ABC transporter CLM98_08680 PF00392 Bacterial regulatory proteins, gntR family CLM98_08690 PF00255 Glutathione peroxidase CLM98_08695 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLM98_08695 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CLM98_08700 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CLM98_08700 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CLM98_08700 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLM98_08705 PF04102 SlyX CLM98_08710 PF09831 CLM98_08710 CLM98_08715 PF13557 CLM98_08715 CLM98_08720 PF00356 Bacterial regulatory proteins, lacI family CLM98_08720 PF13377 Periplasmic binding protein-like domain CLM98_08725 PF07690 Major Facilitator Superfamily CLM98_08730 PF00294 pfkB family carbohydrate kinase CLM98_08735 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) CLM98_08740 PF00809 Pterin binding enzyme CLM98_08740 PF02310 B12 binding domain CLM98_08740 PF02607 B12 binding domain CLM98_08740 PF02965 Vitamin B12 dependent methionine synthase, activation domain CLM98_08745 PF02574 Homocysteine S-methyltransferase CLM98_08750 PF01022 Bacterial regulatory protein, arsR family CLM98_08750 PF08241 Methyltransferase domain CLM98_08755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLM98_08755 PF02770 Acyl-CoA dehydrogenase, middle domain CLM98_08755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLM98_08760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLM98_08770 PF13472 GDSL-like Lipase/Acylhydrolase family CLM98_08780 PF00575 S1 RNA binding domain CLM98_08780 PF00773 RNB domain CLM98_08780 PF08206 Ribonuclease B OB domain CLM98_08785 PF04828 Glutathione-dependent formaldehyde-activating enzyme CLM98_08790 PF00588 SpoU rRNA Methylase family CLM98_08790 PF08032 RNA 2'-O ribose methyltransferase substrate binding CLM98_08800 PF00990 GGDEF domain CLM98_08800 PF07494 Two component regulator propeller CLM98_08800 PF07495 Y_Y_Y domain CLM98_08805 PF00929 Exonuclease CLM98_08810 PF11776 Domain of unknown function (DUF3315) CLM98_08815 PF01895 PhoU domain CLM98_08820 PF00005 ABC transporter CLM98_08825 PF00528 Binding-protein-dependent transport system inner membrane component CLM98_08830 PF00528 Binding-protein-dependent transport system inner membrane component CLM98_08835 PF12849 PBP superfamily domain CLM98_08840 PF12849 PBP superfamily domain CLM98_08845 PF07396 Phosphate-selective porin O and P CLM98_08855 PF00484 Carbonic anhydrase CLM98_08860 PF00916 CLM98_08860 CLM98_08865 PF00633 Helix-hairpin-helix motif CLM98_08865 PF00730 HhH-GPD superfamily base excision DNA repair protein CLM98_08875 PF00378 Enoyl-CoA hydratase/isomerase family CLM98_08880 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLM98_08880 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CLM98_08885 PF00293 NUDIX domain CLM98_08885 PF06945 CLM98_08885 CLM98_08890 PF00581 Rhodanese-like domain CLM98_08895 PF07920 Protein of unknown function (DUF1684) CLM98_08900 PF01510 N-acetylmuramoyl-L-alanine amidase CLM98_08905 PF03473 MOSC domain CLM98_08910 PF05728 Uncharacterised protein family (UPF0227) CLM98_08915 PF00583 Acetyltransferase (GNAT) family CLM98_08920 PF00005 ABC transporter CLM98_08930 PF01170 Putative RNA methylase family UPF0020 CLM98_08930 PF02926 THUMP domain CLM98_08930 PF10672 S-adenosylmethionine-dependent methyltransferase CLM98_08935 PF01513 ATP-NAD kinase CLM98_08940 PF06189 CLM98_08940 CLM98_08945 PF11159 CLM98_08945 CLM98_08955 PF09365 CLM98_08955 CLM98_08960 PF00929 Exonuclease CLM98_08960 PF08411 Exonuclease C-terminal CLM98_08970 PF01494 FAD binding domain CLM98_08975 PF00266 Aminotransferase class-V CLM98_08980 PF12805 CLM98_08980 CLM98_08980 PF13515 CLM98_08980 CLM98_08985 PF06052 3-hydroxyanthranilic acid dioxygenase CLM98_08990 PF00484 Carbonic anhydrase CLM98_08995 PF05838 Glycosyl hydrolase 108 CLM98_08995 PF09374 Predicted Peptidoglycan domain CLM98_09005 PF11655 CLM98_09005 CLM98_09035 PF00072 Response regulator receiver domain CLM98_09035 PF00196 Bacterial regulatory proteins, luxR family CLM98_09040 PF00161 Ribosome inactivating protein CLM98_09055 PF04299 Putative FMN-binding domain CLM98_09075 PF00152 tRNA synthetases class II (D, K and N) CLM98_09075 PF01336 OB-fold nucleic acid binding domain CLM98_09085 PF01521 Iron-sulphur cluster biosynthesis CLM98_09090 PF01250 Ribosomal protein S6 CLM98_09095 PF01084 Ribosomal protein S18 CLM98_09100 PF01281 Ribosomal protein L9, N-terminal domain CLM98_09100 PF03948 Ribosomal protein L9, C-terminal domain CLM98_09105 PF02463 RecF/RecN/SMC N terminal domain CLM98_09110 PF04354 ZipA, C-terminal FtsZ-binding domain CLM98_09120 PF00155 Aminotransferase class I and II CLM98_09125 PF00533 BRCA1 C Terminus (BRCT) domain CLM98_09125 PF01653 NAD-dependent DNA ligase adenylation domain CLM98_09125 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CLM98_09125 PF03120 NAD-dependent DNA ligase OB-fold domain CLM98_09125 PF12826 Helix-hairpin-helix motif CLM98_09130 PF00152 tRNA synthetases class II (D, K and N) CLM98_09135 PF11218 CLM98_09135 CLM98_09145 PF01008 Initiation factor 2 subunit family CLM98_09150 PF00521 DNA gyrase/topoisomerase IV, subunit A CLM98_09150 PF03989 DNA gyrase C-terminal domain, beta-propeller CLM98_09165 PF01175 Urocanase CLM98_09165 PF17391 CLM98_09165 CLM98_09165 PF17392 CLM98_09165 CLM98_09170 PF05013 N-formylglutamate amidohydrolase CLM98_09175 PF00221 Aromatic amino acid lyase CLM98_09180 PF07969 Amidohydrolase family CLM98_09185 PF01979 Amidohydrolase family CLM98_09195 PF00392 Bacterial regulatory proteins, gntR family CLM98_09195 PF07702 UTRA domain CLM98_09200 PF04471 Restriction endonuclease CLM98_09210 PF05597 CLM98_09210 CLM98_09215 PF09650 CLM98_09215 CLM98_09220 PF16697 CLM98_09220 CLM98_09225 PF01794 CLM98_09225 CLM98_09230 PF00174 Oxidoreductase molybdopterin binding domain CLM98_09235 PF00266 Aminotransferase class-V CLM98_09240 PF00800 Prephenate dehydratase CLM98_09240 PF01817 Chorismate mutase type II CLM98_09240 PF01842 ACT domain CLM98_09245 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLM98_09250 PF03544 Gram-negative bacterial TonB protein C-terminal CLM98_09255 PF03544 Gram-negative bacterial TonB protein C-terminal CLM98_09260 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLM98_09260 PF02403 Seryl-tRNA synthetase N-terminal domain CLM98_09265 PF02525 Flavodoxin-like fold CLM98_09270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_09270 PF03466 LysR substrate binding domain CLM98_09280 PF05930 Prophage CP4-57 regulatory protein (AlpA) CLM98_09305 PF02399 CLM98_09305 CLM98_09310 PF05930 Prophage CP4-57 regulatory protein (AlpA) CLM98_09315 PF00589 Phage integrase family CLM98_09315 PF13356 Domain of unknown function (DUF4102) CLM98_09320 PF04343 CLM98_09320 CLM98_09325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_09325 PF12729 CLM98_09325 CLM98_09330 PF01494 FAD binding domain CLM98_09335 PF01047 MarR family CLM98_09345 PF00072 Response regulator receiver domain CLM98_09345 PF00512 His Kinase A (phospho-acceptor) domain CLM98_09345 PF00989 PAS fold CLM98_09345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_09345 PF08447 PAS fold CLM98_09345 PF08448 PAS fold CLM98_09350 PF00072 Response regulator receiver domain CLM98_09360 PF06745 KaiC CLM98_09365 PF00072 Response regulator receiver domain CLM98_09365 PF00512 His Kinase A (phospho-acceptor) domain CLM98_09365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_09365 PF08448 PAS fold CLM98_09375 PF03918 Cytochrome C biogenesis protein CLM98_09380 PF00578 AhpC/TSA family CLM98_09385 PF01578 CLM98_09385 CLM98_09385 PF16327 CLM98_09385 CLM98_09390 PF03100 CcmE CLM98_09395 PF04995 CLM98_09395 CLM98_09400 PF01578 CLM98_09400 CLM98_09405 PF00082 Subtilase family CLM98_09410 PF13490 Putative zinc-finger CLM98_09415 PF04542 Sigma-70 region 2 CLM98_09415 PF08281 Sigma-70, region 4 CLM98_09430 PF00034 Cytochrome c CLM98_09440 PF01292 Prokaryotic cytochrome b561 CLM98_09445 PF05523 WxcM-like, C-terminal CLM98_09450 PF00132 Bacterial transferase hexapeptide (six repeats) CLM98_09460 PF13480 Acetyltransferase (GNAT) domain CLM98_09465 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLM98_09470 PF13440 CLM98_09470 CLM98_09475 PF00535 Glycosyl transferase family 2 CLM98_09485 PF02706 Chain length determinant protein CLM98_09490 PF13649 Methyltransferase domain CLM98_09495 PF01979 Amidohydrolase family CLM98_09505 PF08241 Methyltransferase domain CLM98_09510 PF00534 Glycosyl transferases group 1 CLM98_09510 PF13439 Glycosyltransferase Family 4 CLM98_09515 PF00534 Glycosyl transferases group 1 CLM98_09515 PF13579 Glycosyl transferase 4-like domain CLM98_09520 PF14907 Uncharacterised nucleotidyltransferase CLM98_09525 PF04055 Radical SAM superfamily CLM98_09535 PF00005 ABC transporter CLM98_09540 PF00083 Sugar (and other) transporter CLM98_09545 PF00296 Luciferase-like monooxygenase CLM98_09550 PF16242 CLM98_09550 CLM98_09555 PF06055 CLM98_09555 CLM98_09560 PF00571 CBS domain CLM98_09560 PF01595 CLM98_09560 CLM98_09560 PF03471 Transporter associated domain CLM98_09570 PF01865 Protein of unknown function DUF47 CLM98_09575 PF01384 CLM98_09575 CLM98_09580 PF02698 DUF218 domain CLM98_09585 PF00450 Serine carboxypeptidase CLM98_09590 PF00204 DNA gyrase B CLM98_09590 PF00986 DNA gyrase B subunit, carboxyl terminus CLM98_09590 PF01751 Toprim domain CLM98_09590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_09600 PF00117 Glutamine amidotransferase class-I CLM98_09600 PF06418 CTP synthase N-terminus CLM98_09605 PF00793 DAHP synthetase I family CLM98_09615 PF00113 Enolase, C-terminal TIM barrel domain CLM98_09615 PF03952 Enolase, N-terminal domain CLM98_09620 PF04977 Septum formation initiator CLM98_09625 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CLM98_09630 PF02542 YgbB family CLM98_09635 PF01142 tRNA pseudouridine synthase D (TruD) CLM98_09640 PF01713 Smr domain CLM98_09645 PF01975 Survival protein SurE CLM98_09650 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CLM98_09655 PF09335 CLM98_09655 CLM98_09660 PF01476 LysM domain CLM98_09660 PF01551 Peptidase family M23 CLM98_09665 PF04430 Protein of unknown function (DUF498/DUF598) CLM98_09670 PF01985 CRS1 / YhbY (CRM) domain CLM98_09675 PF01728 FtsJ-like methyltransferase CLM98_09680 PF00004 ATPase family associated with various cellular activities (AAA) CLM98_09680 PF01434 Peptidase family M41 CLM98_09680 PF06480 FtsH Extracellular CLM98_09685 PF00809 Pterin binding enzyme CLM98_09690 PF01715 IPP transferase CLM98_09695 PF17209 CLM98_09695 CLM98_09700 PF01926 50S ribosome-binding GTPase CLM98_09700 PF13167 CLM98_09700 CLM98_09700 PF16360 CLM98_09700 CLM98_09705 PF02464 Competence-damaged protein CLM98_09710 PF03109 CLM98_09710 CLM98_09715 PF00717 Peptidase S24-like CLM98_09715 PF01726 LexA DNA binding domain CLM98_09720 PF00154 recA bacterial DNA recombination protein CLM98_09730 PF02631 RecX family CLM98_09735 PF01411 tRNA synthetases class II (A) CLM98_09735 PF02272 DHHA1 domain CLM98_09735 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLM98_09740 PF02599 Global regulator protein family CLM98_09755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_09755 PF08447 PAS fold CLM98_09760 PF02678 Pirin CLM98_09765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_09765 PF03466 LysR substrate binding domain CLM98_09770 PF00581 Rhodanese-like domain CLM98_09770 PF09335 CLM98_09770 CLM98_09785 PF12146 Putative lysophospholipase CLM98_09790 PF08543 Phosphomethylpyrimidine kinase CLM98_09795 PF06912 CLM98_09795 CLM98_09805 PF02562 PhoH-like protein CLM98_09805 PF13638 PIN domain CLM98_09810 PF00578 AhpC/TSA family CLM98_09815 PF06877 Regulator of ribonuclease activity B CLM98_09820 PF13740 ACT domain CLM98_09825 PF00701 Dihydrodipicolinate synthetase family CLM98_09835 PF00037 4Fe-4S binding domain CLM98_09835 PF11953 Domain of unknown function (DUF3470) CLM98_09840 PF05035 2-keto-3-deoxy-galactonokinase CLM98_09845 PF08450 SMP-30/Gluconolaconase/LRE-like region CLM98_09850 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CLM98_09850 PF13378 Enolase C-terminal domain-like CLM98_09855 PF01081 KDPG and KHG aldolase CLM98_09865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_09865 PF03466 LysR substrate binding domain CLM98_09870 PF00593 TonB dependent receptor CLM98_09870 PF07715 TonB-dependent Receptor Plug Domain CLM98_09875 PF00593 TonB dependent receptor CLM98_09875 PF07715 TonB-dependent Receptor Plug Domain CLM98_09885 PF03629 Domain of unknown function (DUF303) CLM98_09885 PF13364 Beta-galactosidase jelly roll domain CLM98_09890 PF02449 Beta-galactosidase CLM98_09895 PF01055 Glycosyl hydrolases family 31 CLM98_09895 PF07691 PA14 domain CLM98_09895 PF16338 CLM98_09895 CLM98_09895 PF17137 CLM98_09895 CLM98_09900 PF14498 Glycosyl hydrolase family 65, N-terminal domain CLM98_09905 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLM98_09905 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLM98_09915 PF00083 Sugar (and other) transporter CLM98_09920 PF05231 CLM98_09920 CLM98_09935 PF01520 N-acetylmuramoyl-L-alanine amidase CLM98_09935 PF11741 AMIN domain CLM98_09940 PF02649 Type I GTP cyclohydrolase folE2 CLM98_09950 PF01743 Poly A polymerase head domain CLM98_09950 PF12626 Polymerase A arginine-rich C-terminus CLM98_09950 PF12627 Probable RNA and SrmB- binding site of polymerase A CLM98_09955 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CLM98_09960 PF02548 Ketopantoate hydroxymethyltransferase CLM98_09965 PF02569 Pantoate-beta-alanine ligase CLM98_09970 PF02261 Aspartate decarboxylase CLM98_09975 PF00342 Phosphoglucose isomerase CLM98_09980 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CLM98_09995 PF05787 Bacterial protein of unknown function (DUF839) CLM98_10000 PF00933 Glycosyl hydrolase family 3 N terminal domain CLM98_10000 PF01915 Glycosyl hydrolase family 3 C-terminal domain CLM98_10010 PF00474 Sodium:solute symporter family CLM98_10015 PF00563 EAL domain CLM98_10015 PF00990 GGDEF domain CLM98_10015 PF01590 GAF domain CLM98_10025 PF00150 Cellulase (glycosyl hydrolase family 5) CLM98_10030 PF00072 Response regulator receiver domain CLM98_10030 PF02954 Bacterial regulatory protein, Fis family CLM98_10035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_10045 PF04551 GcpE protein CLM98_10050 PF01569 PAP2 superfamily CLM98_10060 PF07690 Major Facilitator Superfamily CLM98_10065 PF01177 Asp/Glu/Hydantoin racemase CLM98_10075 PF00892 EamA-like transporter family CLM98_10080 PF01565 FAD binding domain CLM98_10080 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CLM98_10085 PF01180 Dihydroorotate dehydrogenase CLM98_10090 PF08241 Methyltransferase domain CLM98_10095 PF13828 CLM98_10095 CLM98_10105 PF00171 Aldehyde dehydrogenase family CLM98_10115 PF13994 CLM98_10115 CLM98_10120 PF13641 Glycosyltransferase like family 2 CLM98_10125 PF01522 Polysaccharide deacetylase CLM98_10125 PF14883 Hypothetical glycosyl hydrolase family 13 CLM98_10130 PF13432 Tetratricopeptide repeat CLM98_10130 PF14559 Tetratricopeptide repeat CLM98_10135 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CLM98_10135 PF08479 POTRA domain, ShlB-type CLM98_10135 PF17287 CLM98_10135 CLM98_10140 PF05594 CLM98_10140 CLM98_10140 PF05860 haemagglutination activity domain CLM98_10140 PF13332 CLM98_10140 CLM98_10150 PF05594 CLM98_10150 CLM98_10150 PF13332 CLM98_10150 CLM98_10160 PF05594 CLM98_10160 CLM98_10165 PF03073 TspO/MBR family CLM98_10170 PF00696 Amino acid kinase family CLM98_10170 PF00742 Homoserine dehydrogenase CLM98_10170 PF03447 Homoserine dehydrogenase, NAD binding domain CLM98_10170 PF13840 ACT domain CLM98_10175 PF00288 GHMP kinases N terminal domain CLM98_10175 PF08544 GHMP kinases C terminal CLM98_10180 PF07110 EthD domain CLM98_10185 PF00291 Pyridoxal-phosphate dependent enzyme CLM98_10185 PF14821 Threonine synthase N terminus CLM98_10190 PF13645 CLM98_10190 CLM98_10195 PF00027 Cyclic nucleotide-binding domain CLM98_10195 PF13545 Crp-like helix-turn-helix domain CLM98_10200 PF03129 Anticodon binding domain CLM98_10200 PF13393 Histidyl-tRNA synthetase CLM98_10205 PF01371 Trp repressor protein CLM98_10210 PF01634 ATP phosphoribosyltransferase CLM98_10210 PF08029 HisG, C-terminal domain CLM98_10215 PF00815 Histidinol dehydrogenase CLM98_10220 PF00155 Aminotransferase class I and II CLM98_10225 PF00475 Imidazoleglycerol-phosphate dehydratase CLM98_10225 PF13242 HAD-hyrolase-like CLM98_10230 PF00117 Glutamine amidotransferase class-I CLM98_10235 PF00977 Histidine biosynthesis protein CLM98_10240 PF00977 Histidine biosynthesis protein CLM98_10245 PF01502 Phosphoribosyl-AMP cyclohydrolase CLM98_10245 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CLM98_10250 PF00149 Calcineurin-like phosphoesterase CLM98_10250 PF16370 CLM98_10250 CLM98_10250 PF16371 CLM98_10250 CLM98_10255 PF01650 Peptidase C13 family CLM98_10265 PF03079 ARD/ARD' family CLM98_10270 PF00596 Class II Aldolase and Adducin N-terminal domain CLM98_10275 PF13520 Amino acid permease CLM98_10280 PF13520 Amino acid permease CLM98_10285 PF00293 NUDIX domain CLM98_10290 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLM98_10290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLM98_10295 PF01565 FAD binding domain CLM98_10295 PF02913 FAD linked oxidases, C-terminal domain CLM98_10300 PF09498 CLM98_10300 CLM98_10305 PF13387 CLM98_10305 CLM98_10315 PF01132 Elongation factor P (EF-P) OB domain CLM98_10315 PF08207 Elongation factor P (EF-P) KOW-like domain CLM98_10315 PF09285 Elongation factor P, C-terminal CLM98_10320 PF00106 short chain dehydrogenase CLM98_10325 PF00682 HMGL-like CLM98_10330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLM98_10335 PF00378 Enoyl-CoA hydratase/isomerase family CLM98_10340 PF04023 FeoA domain CLM98_10345 PF02421 Ferrous iron transport protein B CLM98_10345 PF07664 CLM98_10345 CLM98_10345 PF07670 Nucleoside recognition CLM98_10360 PF00155 Aminotransferase class I and II CLM98_10365 PF03473 MOSC domain CLM98_10365 PF03475 3-alpha domain CLM98_10370 PF01113 Dihydrodipicolinate reductase, N-terminus CLM98_10370 PF05173 Dihydrodipicolinate reductase, C-terminus CLM98_10375 PF00117 Glutamine amidotransferase class-I CLM98_10375 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CLM98_10385 PF02142 MGS-like domain CLM98_10385 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLM98_10385 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLM98_10390 PF01272 Transcription elongation factor, GreA/GreB, C-term CLM98_10390 PF03449 Transcription elongation factor, N-terminal CLM98_10400 PF01368 DHH family CLM98_10400 PF02272 DHHA1 domain CLM98_10405 PF05593 CLM98_10405 CLM98_10415 PF15649 CLM98_10415 CLM98_10435 PF01757 CLM98_10435 CLM98_10440 PF04397 LytTr DNA-binding domain CLM98_10445 PF00472 RF-1 domain CLM98_10445 PF03462 PCRF domain CLM98_10450 PF00152 tRNA synthetases class II (D, K and N) CLM98_10450 PF01336 OB-fold nucleic acid binding domain CLM98_10455 PF00072 Response regulator receiver domain CLM98_10455 PF01966 HD domain CLM98_10460 PF00072 Response regulator receiver domain CLM98_10460 PF00512 His Kinase A (phospho-acceptor) domain CLM98_10460 PF01627 Hpt domain CLM98_10460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_10465 PF00378 Enoyl-CoA hydratase/isomerase family CLM98_10470 PF00501 AMP-binding enzyme CLM98_10470 PF13193 AMP-binding enzyme C-terminal domain CLM98_10480 PF00330 Aconitase family (aconitate hydratase) CLM98_10480 PF00694 Aconitase C-terminal domain CLM98_10485 PF04014 Antidote-toxin recognition MazE CLM98_10490 PF01850 PIN domain CLM98_10495 PF00330 Aconitase family (aconitate hydratase) CLM98_10495 PF06434 Aconitate hydratase 2 N-terminus CLM98_10495 PF11791 Aconitate B N-terminal domain CLM98_10500 PF00561 alpha/beta hydrolase fold CLM98_10505 PF00563 EAL domain CLM98_10505 PF00990 GGDEF domain CLM98_10505 PF13185 GAF domain CLM98_10505 PF13426 PAS domain CLM98_10510 PF00072 Response regulator receiver domain CLM98_10510 PF01339 CheB methylesterase CLM98_10515 PF03975 CheD chemotactic sensory transduction CLM98_10520 PF01739 CheR methyltransferase, SAM binding domain CLM98_10520 PF03705 CheR methyltransferase, all-alpha domain CLM98_10525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_10525 PF00672 HAMP domain CLM98_10525 PF12729 CLM98_10525 CLM98_10535 PF01584 CheW-like domain CLM98_10540 PF07238 PilZ domain CLM98_10540 PF07317 Flagellar regulator YcgR CLM98_10550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_10550 PF17201 CLM98_10550 CLM98_10555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_10555 PF00672 HAMP domain CLM98_10555 PF12729 CLM98_10555 CLM98_10560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_10560 PF00672 HAMP domain CLM98_10560 PF12729 CLM98_10560 CLM98_10565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_10565 PF00672 HAMP domain CLM98_10570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_10570 PF12729 CLM98_10570 CLM98_10580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_10580 PF00672 HAMP domain CLM98_10580 PF05227 CHASE3 domain CLM98_10585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_10585 PF00672 HAMP domain CLM98_10585 PF12729 CLM98_10585 CLM98_10590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_10590 PF12729 CLM98_10590 CLM98_10595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_10600 PF13557 CLM98_10600 CLM98_10610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_10610 PF00672 HAMP domain CLM98_10610 PF02743 Cache domain CLM98_10615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_10615 PF17200 CLM98_10615 CLM98_10625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_10625 PF00672 HAMP domain CLM98_10625 PF12729 CLM98_10625 CLM98_10630 PF01584 CheW-like domain CLM98_10630 PF01627 Hpt domain CLM98_10630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_10630 PF02895 Signal transducing histidine kinase, homodimeric domain CLM98_10635 PF00072 Response regulator receiver domain CLM98_10640 PF13466 STAS domain CLM98_10645 PF01584 CheW-like domain CLM98_10650 PF13614 AAA domain CLM98_10655 PF00691 OmpA family CLM98_10655 PF13677 CLM98_10655 CLM98_10660 PF01618 CLM98_10660 CLM98_10670 PF00593 TonB dependent receptor CLM98_10670 PF07715 TonB-dependent Receptor Plug Domain CLM98_10680 PF00069 Protein kinase domain CLM98_10700 PF08845 CLM98_10700 CLM98_10715 PF01609 Transposase DDE domain CLM98_10730 PF00353 Hemolysin-type calcium-binding repeat (2 copies) CLM98_10735 PF14022 CLM98_10735 CLM98_10765 PF01381 Helix-turn-helix CLM98_10775 PF04055 Radical SAM superfamily CLM98_10775 PF13353 4Fe-4S single cluster domain CLM98_10785 PF01609 Transposase DDE domain CLM98_10795 PF01584 CheW-like domain CLM98_10795 PF01627 Hpt domain CLM98_10795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_10795 PF02895 Signal transducing histidine kinase, homodimeric domain CLM98_10800 PF04344 Chemotaxis phosphatase, CheZ CLM98_10805 PF00072 Response regulator receiver domain CLM98_10810 PF04539 Sigma-70 region 3 CLM98_10810 PF04542 Sigma-70 region 2 CLM98_10810 PF04545 Sigma-70, region 4 CLM98_10815 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLM98_10820 PF00448 SRP54-type protein, GTPase domain CLM98_10825 PF00771 FHIPEP family CLM98_10830 PF01312 FlhB HrpN YscU SpaS Family CLM98_10835 PF00563 EAL domain CLM98_10835 PF00990 GGDEF domain CLM98_10835 PF03707 CLM98_10835 CLM98_10840 PF00990 GGDEF domain CLM98_10840 PF07495 Y_Y_Y domain CLM98_10850 PF00990 GGDEF domain CLM98_10850 PF07494 Two component regulator propeller CLM98_10850 PF07495 Y_Y_Y domain CLM98_10855 PF01311 CLM98_10855 CLM98_10860 PF01313 CLM98_10860 CLM98_10865 PF00813 CLM98_10865 CLM98_10870 PF04347 CLM98_10870 CLM98_10875 PF01052 Surface presentation of antigens (SPOA) CLM98_10880 PF01052 Surface presentation of antigens (SPOA) CLM98_10880 PF02154 Flagellar motor switch protein FliM CLM98_10885 PF03748 CLM98_10885 CLM98_10890 PF02120 Flagellar hook-length control protein FliK CLM98_10895 PF02050 Flagellar FliJ protein CLM98_10900 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLM98_10905 PF02108 CLM98_10905 CLM98_10910 PF01706 FliG C-terminal domain CLM98_10910 PF14841 FliG middle domain CLM98_10910 PF14842 FliG N-terminal domain CLM98_10915 PF01514 Secretory protein of YscJ/FliF family CLM98_10915 PF08345 CLM98_10915 CLM98_10920 PF02049 CLM98_10920 CLM98_10925 PF00535 Glycosyl transferase family 2 CLM98_10930 PF05050 Methyltransferase FkbM domain CLM98_10935 PF00132 Bacterial transferase hexapeptide (six repeats) CLM98_10940 PF00355 Rieske [2Fe-2S] domain CLM98_10940 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CLM98_10945 PF00132 Bacterial transferase hexapeptide (six repeats) CLM98_10945 PF14602 Hexapeptide repeat of succinyl-transferase CLM98_10950 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_10955 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_10960 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLM98_10960 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLM98_10970 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLM98_10975 PF00158 Sigma-54 interaction domain CLM98_10975 PF02954 Bacterial regulatory protein, Fis family CLM98_10975 PF06490 CLM98_10975 CLM98_10980 PF00072 Response regulator receiver domain CLM98_10985 PF00309 CLM98_10985 CLM98_10985 PF04552 Sigma-54, DNA binding domain CLM98_10985 PF04963 Sigma-54 factor, core binding domain CLM98_10990 PF00072 Response regulator receiver domain CLM98_10990 PF00196 Bacterial regulatory proteins, luxR family CLM98_10995 PF16823 CLM98_10995 CLM98_11005 PF02561 Flagellar protein FliS CLM98_11010 PF02465 CLM98_11010 CLM98_11010 PF07195 CLM98_11010 CLM98_11010 PF07196 Flagellin hook IN motif CLM98_11015 PF00669 Bacterial flagellin N-terminal helical region CLM98_11015 PF00700 Bacterial flagellin C-terminal helical region CLM98_11015 PF07196 Flagellin hook IN motif CLM98_11020 PF00669 Bacterial flagellin N-terminal helical region CLM98_11020 PF00700 Bacterial flagellin C-terminal helical region CLM98_11025 PF00460 Flagella basal body rod protein CLM98_11025 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLM98_11030 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CLM98_11030 PF10135 CLM98_11030 CLM98_11035 PF02119 CLM98_11035 CLM98_11040 PF02107 CLM98_11040 CLM98_11045 PF00460 Flagella basal body rod protein CLM98_11045 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLM98_11050 PF00460 Flagella basal body rod protein CLM98_11050 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLM98_11055 PF00460 Flagella basal body rod protein CLM98_11055 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLM98_11055 PF07559 Flagellar basal body protein FlaE CLM98_11060 PF03963 CLM98_11060 CLM98_11060 PF13860 FlgD Ig-like domain CLM98_11060 PF13861 FlgD Tudor-like domain CLM98_11065 PF00460 Flagella basal body rod protein CLM98_11065 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLM98_11070 PF00460 Flagella basal body rod protein CLM98_11075 PF00072 Response regulator receiver domain CLM98_11075 PF01584 CheW-like domain CLM98_11080 PF13144 SAF-like CLM98_11085 PF04316 Anti-sigma-28 factor, FlgM CLM98_11095 PF00512 His Kinase A (phospho-acceptor) domain CLM98_11095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_11100 PF00072 Response regulator receiver domain CLM98_11100 PF00563 EAL domain CLM98_11100 PF00990 GGDEF domain CLM98_11105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_11105 PF07730 Histidine kinase CLM98_11105 PF08448 PAS fold CLM98_11105 PF13426 PAS domain CLM98_11110 PF00563 EAL domain CLM98_11110 PF00990 GGDEF domain CLM98_11110 PF08447 PAS fold CLM98_11110 PF13426 PAS domain CLM98_11120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_11125 PF04356 Protein of unknown function (DUF489) CLM98_11130 PF03054 tRNA methyl transferase CLM98_11135 PF00293 NUDIX domain CLM98_11140 PF02617 ATP-dependent Clp protease adaptor protein ClpS CLM98_11145 PF00004 ATPase family associated with various cellular activities (AAA) CLM98_11145 PF02861 Clp amino terminal domain CLM98_11145 PF07724 AAA domain (Cdc48 subfamily) CLM98_11145 PF10431 C-terminal, D2-small domain, of ClpB protein CLM98_11150 PF01176 Translation initiation factor 1A / IF-1 CLM98_11155 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CLM98_11160 PF04339 CLM98_11160 CLM98_11165 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM98_11170 PF01580 FtsK/SpoIIIE family CLM98_11170 PF09397 Ftsk gamma domain CLM98_11170 PF13491 CLM98_11170 CLM98_11175 PF01841 Transglutaminase-like superfamily CLM98_11175 PF12969 Domain of Unknown Function with PDB structure (DUF3857) CLM98_11180 PF03548 Outer membrane lipoprotein carrier protein LolA CLM98_11190 PF00004 ATPase family associated with various cellular activities (AAA) CLM98_11190 PF12002 MgsA AAA+ ATPase C terminal CLM98_11190 PF16193 CLM98_11190 CLM98_11195 PF02537 CLM98_11195 CLM98_11205 PF00108 Thiolase, N-terminal domain CLM98_11205 PF02803 Thiolase, C-terminal domain CLM98_11210 PF00378 Enoyl-CoA hydratase/isomerase family CLM98_11210 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CLM98_11210 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CLM98_11215 PF00440 Bacterial regulatory proteins, tetR family CLM98_11220 PF00334 Nucleoside diphosphate kinase CLM98_11225 PF04055 Radical SAM superfamily CLM98_11230 PF13432 Tetratricopeptide repeat CLM98_11235 PF13413 Helix-turn-helix domain CLM98_11235 PF13464 CLM98_11235 CLM98_11240 PF09976 Tetratricopeptide repeat CLM98_11245 PF13360 PQQ-like domain CLM98_11250 PF01926 50S ribosome-binding GTPase CLM98_11250 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CLM98_11255 PF00994 Probable molybdopterin binding domain CLM98_11255 PF03453 MoeA N-terminal region (domain I and II) CLM98_11255 PF03454 MoeA C-terminal region (domain IV) CLM98_11260 PF00581 Rhodanese-like domain CLM98_11260 PF00899 ThiF family CLM98_11270 PF00593 TonB dependent receptor CLM98_11270 PF07715 TonB-dependent Receptor Plug Domain CLM98_11280 PF13628 CLM98_11280 CLM98_11290 PF00107 Zinc-binding dehydrogenase CLM98_11290 PF08240 Alcohol dehydrogenase GroES-like domain CLM98_11290 PF13823 Alcohol dehydrogenase GroES-associated CLM98_11295 PF06884 CLM98_11295 CLM98_11300 PF03372 Endonuclease/Exonuclease/phosphatase family CLM98_11305 PF04193 PQ loop repeat CLM98_11310 PF00994 Probable molybdopterin binding domain CLM98_11310 PF03453 MoeA N-terminal region (domain I and II) CLM98_11310 PF03454 MoeA C-terminal region (domain IV) CLM98_11315 PF12804 MobA-like NTP transferase domain CLM98_11325 PF00561 alpha/beta hydrolase fold CLM98_11330 PF01566 CLM98_11330 CLM98_11335 PF01325 Iron dependent repressor, N-terminal DNA binding domain CLM98_11335 PF02742 Iron dependent repressor, metal binding and dimerisation domain CLM98_11340 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLM98_11345 PF00929 Exonuclease CLM98_11350 PF00924 Mechanosensitive ion channel CLM98_11355 PF00391 PEP-utilising enzyme, mobile domain CLM98_11355 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CLM98_11355 PF02896 PEP-utilising enzyme, TIM barrel domain CLM98_11360 PF03618 CLM98_11360 CLM98_11365 PF06853 CLM98_11365 CLM98_11370 PF00293 NUDIX domain CLM98_11375 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_11380 PF01066 CDP-alcohol phosphatidyltransferase CLM98_11385 PF09712 CLM98_11385 CLM98_11390 PF00561 alpha/beta hydrolase fold CLM98_11395 PF04024 CLM98_11395 CLM98_11405 PF01266 FAD dependent oxidoreductase CLM98_11415 PF00575 S1 RNA binding domain CLM98_11415 PF09371 Tex-like protein N-terminal domain CLM98_11415 PF12836 Helix-hairpin-helix motif CLM98_11415 PF16921 CLM98_11415 CLM98_11420 PF00072 Response regulator receiver domain CLM98_11420 PF00512 His Kinase A (phospho-acceptor) domain CLM98_11420 PF01590 GAF domain CLM98_11420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_11420 PF08447 PAS fold CLM98_11420 PF08448 PAS fold CLM98_11420 PF13185 GAF domain CLM98_11465 PF00034 Cytochrome c CLM98_11470 PF00034 Cytochrome c CLM98_11475 PF00529 HlyD family secretion protein CLM98_11475 PF16576 CLM98_11475 CLM98_11480 PF00873 AcrB/AcrD/AcrF family CLM98_11485 PF00873 AcrB/AcrD/AcrF family CLM98_11495 PF01081 KDPG and KHG aldolase CLM98_11500 PF00920 Dehydratase family CLM98_11505 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CLM98_11510 PF02685 Glucokinase CLM98_11515 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CLM98_11515 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CLM98_11520 PF00005 ABC transporter CLM98_11520 PF08402 TOBE domain CLM98_11525 PF01571 Aminomethyltransferase folate-binding domain CLM98_11525 PF08669 Glycine cleavage T-protein C-terminal barrel domain CLM98_11530 PF07896 Protein of unknown function (DUF1674) CLM98_11535 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CLM98_11540 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CLM98_11545 PF00890 FAD binding domain CLM98_11545 PF02910 Fumarate reductase flavoprotein C-term CLM98_11555 PF13085 2Fe-2S iron-sulfur cluster binding domain CLM98_11555 PF13534 4Fe-4S dicluster domain CLM98_11560 PF03937 Flavinator of succinate dehydrogenase CLM98_11570 PF02687 CLM98_11570 CLM98_11570 PF12704 MacB-like periplasmic core domain CLM98_11575 PF00005 ABC transporter CLM98_11580 PF01370 NAD dependent epimerase/dehydratase family CLM98_11585 PF00753 Metallo-beta-lactamase superfamily CLM98_11585 PF03772 CLM98_11585 CLM98_11585 PF13567 CLM98_11585 CLM98_11590 PF01618 CLM98_11590 CLM98_11595 PF02472 Biopolymer transport protein ExbD/TolR CLM98_11600 PF00005 ABC transporter CLM98_11600 PF00664 ABC transporter transmembrane region CLM98_11605 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CLM98_11610 PF02348 Cytidylyltransferase CLM98_11615 PF01451 Low molecular weight phosphotyrosine protein phosphatase CLM98_11620 PF01436 NHL repeat CLM98_11625 PF01541 GIY-YIG catalytic domain CLM98_11625 PF02151 UvrB/uvrC motif CLM98_11625 PF08459 UvrC Helix-hairpin-helix N-terminal CLM98_11630 PF01066 CDP-alcohol phosphatidyltransferase CLM98_11650 PF00501 AMP-binding enzyme CLM98_11650 PF00550 Phosphopantetheine attachment site CLM98_11650 PF00668 Condensation domain CLM98_11650 PF13193 AMP-binding enzyme C-terminal domain CLM98_11655 PF00501 AMP-binding enzyme CLM98_11655 PF00550 Phosphopantetheine attachment site CLM98_11655 PF00668 Condensation domain CLM98_11655 PF00975 Thioesterase domain CLM98_11655 PF13193 AMP-binding enzyme C-terminal domain CLM98_11670 PF00589 Phage integrase family CLM98_11680 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CLM98_11680 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CLM98_11680 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLM98_11685 PF03486 HI0933-like protein CLM98_11690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLM98_11700 PF00581 Rhodanese-like domain CLM98_11705 PF00072 Response regulator receiver domain CLM98_11705 PF00196 Bacterial regulatory proteins, luxR family CLM98_11710 PF00575 S1 RNA binding domain CLM98_11710 PF10150 Ribonuclease E/G family CLM98_11715 PF00849 RNA pseudouridylate synthase CLM98_11715 PF01479 S4 domain CLM98_11720 PF11737 CLM98_11720 CLM98_11725 PF02535 CLM98_11725 CLM98_11730 PF03544 Gram-negative bacterial TonB protein C-terminal CLM98_11735 PF01329 Pterin 4 alpha carbinolamine dehydratase CLM98_11740 PF01106 NifU-like domain CLM98_11755 PF04940 Sensors of blue-light using FAD CLM98_11760 PF01596 O-methyltransferase CLM98_11765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLM98_11770 PF02585 GlcNAc-PI de-N-acetylase CLM98_11775 PF05401 Nodulation protein S (NodS) CLM98_11780 PF00535 Glycosyl transferase family 2 CLM98_11790 PF00732 GMC oxidoreductase CLM98_11790 PF05199 GMC oxidoreductase CLM98_11795 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_11800 PF12472 CLM98_11800 CLM98_11845 PF02303 Helix-destabilising protein CLM98_11860 PF12472 CLM98_11860 CLM98_11880 PF09335 CLM98_11880 CLM98_11895 PF07995 Glucose / Sorbosone dehydrogenase CLM98_11905 PF00144 Beta-lactamase CLM98_11915 PF00072 Response regulator receiver domain CLM98_11915 PF04397 LytTr DNA-binding domain CLM98_11920 PF06580 CLM98_11920 CLM98_11935 PF00082 Subtilase family CLM98_11935 PF03797 Autotransporter beta-domain CLM98_11935 PF12951 CLM98_11935 CLM98_11945 PF16576 CLM98_11945 CLM98_11950 PF00873 AcrB/AcrD/AcrF family CLM98_11955 PF02321 Outer membrane efflux protein CLM98_11960 PF00512 His Kinase A (phospho-acceptor) domain CLM98_11960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_11965 PF00072 Response regulator receiver domain CLM98_11965 PF00196 Bacterial regulatory proteins, luxR family CLM98_11970 PF12951 CLM98_11970 CLM98_11970 PF13018 CLM98_11970 CLM98_11975 PF00563 EAL domain CLM98_11980 PF07081 Protein of unknown function (DUF1349) CLM98_11990 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CLM98_11995 PF05974 Domain of unknown function (DUF892) CLM98_12005 PF10685 CLM98_12005 CLM98_12020 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLM98_12020 PF10414 Sirohaem synthase dimerisation region CLM98_12020 PF13241 Putative NAD(P)-binding CLM98_12020 PF14824 Sirohaem biosynthesis protein central CLM98_12035 PF05977 Transmembrane secretion effector CLM98_12045 PF07681 CLM98_12045 CLM98_12050 PF00857 Isochorismatase family CLM98_12055 PF12833 Helix-turn-helix domain CLM98_12060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_12060 PF07495 Y_Y_Y domain CLM98_12060 PF07730 Histidine kinase CLM98_12065 PF00072 Response regulator receiver domain CLM98_12065 PF00196 Bacterial regulatory proteins, luxR family CLM98_12070 PF17201 CLM98_12070 CLM98_12085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_12085 PF03466 LysR substrate binding domain CLM98_12090 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CLM98_12090 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CLM98_12095 PF10070 CLM98_12095 CLM98_12105 PF13560 Helix-turn-helix domain CLM98_12110 PF05284 CLM98_12110 CLM98_12115 PF04002 RadC-like JAB domain CLM98_12120 PF05930 Prophage CP4-57 regulatory protein (AlpA) CLM98_12130 PF08843 Nucleotidyl transferase of unknown function (DUF1814) CLM98_12135 PF11459 CLM98_12135 CLM98_12135 PF17194 CLM98_12135 CLM98_12140 PF00589 Phage integrase family CLM98_12140 PF13356 Domain of unknown function (DUF4102) CLM98_12140 PF14659 Phage integrase, N-terminal SAM-like domain CLM98_12150 PF00593 TonB dependent receptor CLM98_12150 PF07715 TonB-dependent Receptor Plug Domain CLM98_12155 PF07916 CLM98_12155 CLM98_12160 PF12553 CLM98_12160 CLM98_12165 PF01850 PIN domain CLM98_12170 PF04014 Antidote-toxin recognition MazE CLM98_12175 PF16263 CLM98_12175 CLM98_12185 PF04542 Sigma-70 region 2 CLM98_12185 PF08281 Sigma-70, region 4 CLM98_12190 PF04773 FecR protein CLM98_12190 PF16220 CLM98_12190 CLM98_12195 PF00593 TonB dependent receptor CLM98_12195 PF07715 TonB-dependent Receptor Plug Domain CLM98_12205 PF10947 CLM98_12205 CLM98_12210 PF07514 Putative helicase CLM98_12210 PF07515 Protein of unknown function (DUF1528) CLM98_12230 PF13437 HlyD family secretion protein CLM98_12230 PF13533 Biotin-lipoyl like CLM98_12235 PF00005 ABC transporter CLM98_12235 PF00664 ABC transporter transmembrane region CLM98_12240 PF05930 Prophage CP4-57 regulatory protein (AlpA) CLM98_12245 PF13614 AAA domain CLM98_12280 PF00436 Single-strand binding protein family CLM98_12285 PF01131 DNA topoisomerase CLM98_12285 PF01396 CLM98_12285 CLM98_12285 PF01751 Toprim domain CLM98_12290 PF00145 C-5 cytosine-specific DNA methylase CLM98_12300 PF13304 AAA domain CLM98_12330 PF11284 CLM98_12330 CLM98_12335 PF00589 Phage integrase family CLM98_12335 PF13356 Domain of unknown function (DUF4102) CLM98_12335 PF14659 Phage integrase, N-terminal SAM-like domain CLM98_12340 PF06250 CLM98_12340 CLM98_12350 PF00892 EamA-like transporter family CLM98_12355 PF00892 EamA-like transporter family CLM98_12360 PF00440 Bacterial regulatory proteins, tetR family CLM98_12365 PF02525 Flavodoxin-like fold CLM98_12370 PF00043 Glutathione S-transferase, C-terminal domain CLM98_12370 PF13417 Glutathione S-transferase, N-terminal domain CLM98_12375 PF05544 Proline racemase CLM98_12380 PF03358 NADPH-dependent FMN reductase CLM98_12380 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease CLM98_12385 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_12390 PF07690 Major Facilitator Superfamily CLM98_12395 PF12833 Helix-turn-helix domain CLM98_12400 PF12101 CLM98_12400 CLM98_12405 PF11679 CLM98_12405 CLM98_12435 PF00271 Helicase conserved C-terminal domain CLM98_12450 PF07791 CLM98_12450 CLM98_12455 PF14412 CLM98_12455 CLM98_12505 PF01464 Transglycosylase SLT domain CLM98_12510 PF11072 CLM98_12510 CLM98_12515 PF12696 TraM recognition site of TraD and TraG CLM98_12520 PF14348 CLM98_12520 CLM98_12525 PF12532 CLM98_12525 CLM98_12525 PF13476 AAA domain CLM98_12545 PF13245 Part of AAA domain CLM98_12545 PF13361 UvrD-like helicase C-terminal domain CLM98_12555 PF13511 CLM98_12555 CLM98_12570 PF09686 CLM98_12570 CLM98_12575 PF11660 CLM98_12575 CLM98_12580 PF11190 CLM98_12580 CLM98_12585 PF11990 CLM98_12585 CLM98_12590 PF11444 CLM98_12590 CLM98_12595 PF11920 CLM98_12595 CLM98_12610 PF11130 CLM98_12610 CLM98_12615 PF13462 Thioredoxin CLM98_12620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_12620 PF03466 LysR substrate binding domain CLM98_12625 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CLM98_12625 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CLM98_12630 PF03401 Tripartite tricarboxylate transporter family receptor CLM98_12635 PF06684 Amino acid synthesis CLM98_12645 PF04002 RadC-like JAB domain CLM98_12650 PF07511 CLM98_12650 CLM98_12655 PF06834 CLM98_12655 CLM98_12665 PF01507 Phosphoadenosine phosphosulfate reductase family CLM98_12680 PF00589 Phage integrase family CLM98_12680 PF13356 Domain of unknown function (DUF4102) CLM98_12680 PF14659 Phage integrase, N-terminal SAM-like domain CLM98_12685 PF00117 Glutamine amidotransferase class-I CLM98_12685 PF00958 GMP synthase C terminal domain CLM98_12685 PF02540 NAD synthase CLM98_12690 PF00478 IMP dehydrogenase / GMP reductase domain CLM98_12690 PF00571 CBS domain CLM98_12695 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CLM98_12695 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CLM98_12700 PF06844 Protein of unknown function (DUF1244) CLM98_12705 PF00999 Sodium/hydrogen exchanger family CLM98_12705 PF02254 TrkA-N domain CLM98_12710 PF00483 Nucleotidyl transferase CLM98_12715 PF02719 Polysaccharide biosynthesis protein CLM98_12715 PF13727 CoA-binding domain CLM98_12720 PF00953 Glycosyl transferase family 4 CLM98_12725 PF13432 Tetratricopeptide repeat CLM98_12730 PF06305 CLM98_12730 CLM98_12735 PF00216 Bacterial DNA-binding protein CLM98_12740 PF00575 S1 RNA binding domain CLM98_12745 PF02224 Cytidylate kinase CLM98_12750 PF00444 Ribosomal protein L36 CLM98_12765 PF04371 Porphyromonas-type peptidyl-arginine deiminase CLM98_12770 PF00795 Carbon-nitrogen hydrolase CLM98_12775 PF13420 Acetyltransferase (GNAT) domain CLM98_12780 PF01963 CLM98_12780 CLM98_12785 PF03372 Endonuclease/Exonuclease/phosphatase family CLM98_12790 PF00754 F5/8 type C domain CLM98_12790 PF06202 Amylo-alpha-1,6-glucosidase CLM98_12795 PF00528 Binding-protein-dependent transport system inner membrane component CLM98_12800 PF00528 Binding-protein-dependent transport system inner membrane component CLM98_12805 PF13416 Bacterial extracellular solute-binding protein CLM98_12810 PF10091 Putative glucoamylase CLM98_12815 PF00593 TonB dependent receptor CLM98_12815 PF13620 Carboxypeptidase regulatory-like domain CLM98_12820 PF00356 Bacterial regulatory proteins, lacI family CLM98_12820 PF13377 Periplasmic binding protein-like domain CLM98_12825 PF01722 BolA-like protein CLM98_12830 PF03795 YCII-related domain CLM98_12835 PF02616 ScpA/B protein CLM98_12840 PF04079 Putative transcriptional regulators (Ypuh-like) CLM98_12845 PF00849 RNA pseudouridylate synthase CLM98_12845 PF01479 S4 domain CLM98_12855 PF05096 Glutamine cyclotransferase CLM98_12860 PF00795 Carbon-nitrogen hydrolase CLM98_12865 PF00155 Aminotransferase class I and II CLM98_12870 PF00005 ABC transporter CLM98_12875 PF03379 CLM98_12875 CLM98_12880 PF01578 CLM98_12880 CLM98_12885 PF04995 CLM98_12885 CLM98_12890 PF03100 CcmE CLM98_12895 PF01578 CLM98_12895 CLM98_12895 PF16327 CLM98_12895 CLM98_12900 PF08534 Redoxin CLM98_12905 PF03918 Cytochrome C biogenesis protein CLM98_12910 PF13432 Tetratricopeptide repeat CLM98_12915 PF00561 alpha/beta hydrolase fold CLM98_12920 PF00313 'Cold-shock' DNA-binding domain CLM98_12920 PF06961 CLM98_12920 CLM98_12925 PF00005 ABC transporter CLM98_12925 PF00664 ABC transporter transmembrane region CLM98_12930 PF00005 ABC transporter CLM98_12930 PF00664 ABC transporter transmembrane region CLM98_12935 PF01654 CLM98_12935 CLM98_12940 PF02322 CLM98_12940 CLM98_12945 PF08173 CLM98_12945 CLM98_12955 PF07690 Major Facilitator Superfamily CLM98_12960 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CLM98_12960 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CLM98_12970 PF00171 Aldehyde dehydrogenase family CLM98_12975 PF00696 Amino acid kinase family CLM98_12975 PF01472 PUA domain CLM98_12980 PF03795 YCII-related domain CLM98_12985 PF00206 Lyase CLM98_12990 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLM98_12995 PF13302 Acetyltransferase (GNAT) domain CLM98_13000 PF00696 Amino acid kinase family CLM98_13000 PF04768 Protein of unknown function (DUF619) CLM98_13005 PF01546 Peptidase family M20/M25/M40 CLM98_13005 PF07687 Peptidase dimerisation domain CLM98_13010 PF13508 Acetyltransferase (GNAT) domain CLM98_13015 PF00764 Arginosuccinate synthase CLM98_13020 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLM98_13020 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLM98_13030 PF01406 tRNA synthetases class I (C) catalytic domain CLM98_13030 PF09190 DALR domain CLM98_13035 PF02657 Fe-S metabolism associated domain CLM98_13040 PF05977 Transmembrane secretion effector CLM98_13045 PF01258 Prokaryotic dksA/traR C4-type zinc finger CLM98_13050 PF01809 CLM98_13050 CLM98_13055 PF01979 Amidohydrolase family CLM98_13060 PF01551 Peptidase family M23 CLM98_13065 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLM98_13075 PF13520 Amino acid permease CLM98_13080 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CLM98_13085 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CLM98_13095 PF00753 Metallo-beta-lactamase superfamily CLM98_13100 PF16242 CLM98_13100 CLM98_13120 PF00544 Pectate lyase CLM98_13130 PF00295 Glycosyl hydrolases family 28 CLM98_13140 PF13419 Haloacid dehalogenase-like hydrolase CLM98_13145 PF13489 Methyltransferase domain CLM98_13150 PF01979 Amidohydrolase family CLM98_13160 PF01132 Elongation factor P (EF-P) OB domain CLM98_13160 PF08207 Elongation factor P (EF-P) KOW-like domain CLM98_13160 PF09285 Elongation factor P, C-terminal CLM98_13165 PF13353 4Fe-4S single cluster domain CLM98_13170 PF00563 EAL domain CLM98_13170 PF00672 HAMP domain CLM98_13170 PF00990 GGDEF domain CLM98_13170 PF17203 CLM98_13170 CLM98_13175 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein CLM98_13180 PF00588 SpoU rRNA Methylase family CLM98_13185 PF00459 Inositol monophosphatase family CLM98_13190 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CLM98_13190 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CLM98_13195 PF00545 ribonuclease CLM98_13200 PF01337 Barstar (barnase inhibitor) CLM98_13210 PF00005 ABC transporter CLM98_13210 PF12848 ABC transporter CLM98_13210 PF16326 CLM98_13210 CLM98_13215 PF00270 DEAD/DEAH box helicase CLM98_13215 PF00271 Helicase conserved C-terminal domain CLM98_13215 PF03880 DbpA RNA binding domain CLM98_13220 PF00156 Phosphoribosyl transferase domain CLM98_13225 PF02696 CLM98_13225 CLM98_13230 PF07859 alpha/beta hydrolase fold CLM98_13235 PF00043 Glutathione S-transferase, C-terminal domain CLM98_13235 PF02798 Glutathione S-transferase, N-terminal domain CLM98_13240 PF00313 'Cold-shock' DNA-binding domain CLM98_13245 PF07152 YaeQ protein CLM98_13250 PF03486 HI0933-like protein CLM98_13255 PF00563 EAL domain CLM98_13255 PF00990 GGDEF domain CLM98_13255 PF13188 PAS domain CLM98_13260 PF01435 Peptidase family M48 CLM98_13265 PF00749 tRNA synthetases class I (E and Q), catalytic domain CLM98_13270 PF00106 short chain dehydrogenase CLM98_13275 PF05233 CLM98_13275 CLM98_13275 PF07879 CLM98_13275 CLM98_13285 PF01963 CLM98_13285 CLM98_13290 PF07920 Protein of unknown function (DUF1684) CLM98_13295 PF01119 DNA mismatch repair protein, C-terminal domain CLM98_13295 PF08676 MutL C terminal dimerisation domain CLM98_13295 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_13300 PF01520 N-acetylmuramoyl-L-alanine amidase CLM98_13300 PF11741 AMIN domain CLM98_13305 PF02367 Uncharacterised P-loop hydrolase UPF0079 CLM98_13310 PF01256 Carbohydrate kinase CLM98_13310 PF03853 YjeF-related protein N-terminus CLM98_13315 PF08331 CLM98_13315 CLM98_13315 PF13484 CLM98_13315 CLM98_13320 PF02601 CLM98_13320 CLM98_13320 PF13742 CLM98_13320 CLM98_13325 PF06057 Bacterial virulence protein (VirJ) CLM98_13330 PF03781 Sulfatase-modifying factor enzyme 1 CLM98_13345 PF00570 HRDC domain CLM98_13345 PF01612 3'-5' exonuclease CLM98_13350 PF01068 ATP dependent DNA ligase domain CLM98_13350 PF04679 ATP dependent DNA ligase C terminal region CLM98_13350 PF13298 DNA polymerase Ligase (LigD) CLM98_13355 PF12244 CLM98_13355 CLM98_13360 PF00816 H-NS histone family CLM98_13370 PF00589 Phage integrase family CLM98_13420 PF05016 Plasmid stabilisation system protein CLM98_13425 PF01402 Ribbon-helix-helix protein, copG family CLM98_13440 PF00239 Resolvase, N terminal domain CLM98_13445 PF13166 CLM98_13445 CLM98_13455 PF02384 N-6 DNA Methylase CLM98_13460 PF09572 CLM98_13460 CLM98_13470 PF07929 Plasmid pRiA4b ORF-3-like protein CLM98_13480 PF01402 Ribbon-helix-helix protein, copG family CLM98_13490 PF04796 CLM98_13490 CLM98_13500 PF13289 CLM98_13500 CLM98_13505 PF01935 Domain of unknown function DUF87 CLM98_13510 PF00990 GGDEF domain CLM98_13515 PF01584 CheW-like domain CLM98_13520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_13520 PF00672 HAMP domain CLM98_13520 PF12729 CLM98_13520 CLM98_13525 PF02245 Methylpurine-DNA glycosylase (MPG) CLM98_13530 PF00270 DEAD/DEAH box helicase CLM98_13530 PF00271 Helicase conserved C-terminal domain CLM98_13530 PF08494 CLM98_13530 CLM98_13540 PF11743 CLM98_13540 CLM98_13550 PF04386 Stringent starvation protein B CLM98_13555 PF00043 Glutathione S-transferase, C-terminal domain CLM98_13555 PF13417 Glutathione S-transferase, N-terminal domain CLM98_13560 PF02167 Cytochrome C1 family CLM98_13565 PF00032 Cytochrome b(C-terminal)/b6/petD CLM98_13565 PF00033 Cytochrome b(N-terminal)/b6/petB CLM98_13570 PF00355 Rieske [2Fe-2S] domain CLM98_13570 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CLM98_13580 PF01464 Transglycosylase SLT domain CLM98_13585 PF08279 HTH domain CLM98_13585 PF13280 CLM98_13585 CLM98_13590 PF02798 Glutathione S-transferase, N-terminal domain CLM98_13595 PF00919 Uncharacterized protein family UPF0004 CLM98_13595 PF01938 TRAM domain CLM98_13595 PF04055 Radical SAM superfamily CLM98_13600 PF02562 PhoH-like protein CLM98_13610 PF02130 Uncharacterized protein family UPF0054 CLM98_13620 PF00571 CBS domain CLM98_13620 PF03471 Transporter associated domain CLM98_13625 PF13387 CLM98_13625 CLM98_13630 PF01544 CorA-like Mg2+ transporter protein CLM98_13635 PF00171 Aldehyde dehydrogenase family CLM98_13640 PF00528 Binding-protein-dependent transport system inner membrane component CLM98_13645 PF00528 Binding-protein-dependent transport system inner membrane component CLM98_13650 PF00005 ABC transporter CLM98_13650 PF08402 TOBE domain CLM98_13655 PF02321 Outer membrane efflux protein CLM98_13660 PF07690 Major Facilitator Superfamily CLM98_13665 PF13533 Biotin-lipoyl like CLM98_13665 PF16576 CLM98_13665 CLM98_13670 PF13416 Bacterial extracellular solute-binding protein CLM98_13675 PF00202 Aminotransferase class-III CLM98_13680 PF00120 Glutamine synthetase, catalytic domain CLM98_13685 PF07722 Peptidase C26 CLM98_13690 PF00120 Glutamine synthetase, catalytic domain CLM98_13695 PF01266 FAD dependent oxidoreductase CLM98_13700 PF00072 Response regulator receiver domain CLM98_13700 PF00990 GGDEF domain CLM98_13705 PF01814 Hemerythrin HHE cation binding domain CLM98_13710 PF00083 Sugar (and other) transporter CLM98_13710 PF07690 Major Facilitator Superfamily CLM98_13720 PF00384 Molybdopterin oxidoreductase CLM98_13720 PF01568 Molydopterin dinucleotide binding domain CLM98_13725 PF02634 FdhD/NarQ family CLM98_13730 PF07690 Major Facilitator Superfamily CLM98_13745 PF00202 Aminotransferase class-III CLM98_13755 PF04286 CLM98_13755 CLM98_13760 PF00072 Response regulator receiver domain CLM98_13760 PF00512 His Kinase A (phospho-acceptor) domain CLM98_13760 PF01627 Hpt domain CLM98_13760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_13760 PF03924 CHASE domain CLM98_13760 PF13426 PAS domain CLM98_13765 PF00072 Response regulator receiver domain CLM98_13765 PF13487 HD domain CLM98_13770 PF07690 Major Facilitator Superfamily CLM98_13780 PF05088 CLM98_13780 CLM98_13780 PF12466 CLM98_13780 CLM98_13785 PF00440 Bacterial regulatory proteins, tetR family CLM98_13790 PF16576 CLM98_13790 CLM98_13795 PF00873 AcrB/AcrD/AcrF family CLM98_13800 PF00356 Bacterial regulatory proteins, lacI family CLM98_13800 PF13377 Periplasmic binding protein-like domain CLM98_13805 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLM98_13805 PF00381 PTS HPr component phosphorylation site CLM98_13805 PF00391 PEP-utilising enzyme, mobile domain CLM98_13805 PF02896 PEP-utilising enzyme, TIM barrel domain CLM98_13805 PF05524 PEP-utilising enzyme, N-terminal CLM98_13810 PF00294 pfkB family carbohydrate kinase CLM98_13815 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLM98_13820 PF04966 Carbohydrate-selective porin, OprB family CLM98_13830 PF14412 CLM98_13830 CLM98_13835 PF07791 CLM98_13835 CLM98_13855 PF02355 Protein export membrane protein CLM98_13855 PF07549 SecD/SecF GG Motif CLM98_13860 PF02355 Protein export membrane protein CLM98_13860 PF07549 SecD/SecF GG Motif CLM98_13860 PF13721 SecD export protein N-terminal TM region CLM98_13865 PF02699 Preprotein translocase subunit CLM98_13870 PF01702 Queuine tRNA-ribosyltransferase CLM98_13875 PF02547 Queuosine biosynthesis protein CLM98_13880 PF01037 AsnC family CLM98_13880 PF13412 Winged helix-turn-helix DNA-binding CLM98_13885 PF00202 Aminotransferase class-III CLM98_13890 PF04488 Glycosyltransferase sugar-binding region containing DXD motif CLM98_13895 PF00149 Calcineurin-like phosphoesterase CLM98_13895 PF16656 CLM98_13895 CLM98_13900 PF02333 Phytase CLM98_13905 PF00593 TonB dependent receptor CLM98_13905 PF07715 TonB-dependent Receptor Plug Domain CLM98_13910 PF14681 Uracil phosphoribosyltransferase CLM98_13915 PF00759 Glycosyl hydrolase family 9 CLM98_13915 PF02927 N-terminal ig-like domain of cellulase CLM98_13920 PF01019 Gamma-glutamyltranspeptidase CLM98_13925 PF00037 4Fe-4S binding domain CLM98_13940 PF01467 Cytidylyltransferase CLM98_13945 PF03602 Conserved hypothetical protein 95 CLM98_13950 PF00183 Hsp90 protein CLM98_13950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_13955 PF05593 CLM98_13955 CLM98_13955 PF14220 CLM98_13955 CLM98_13965 PF07944 Putative glycosyl hydrolase of unknown function (DUF1680) CLM98_13970 PF00593 TonB dependent receptor CLM98_13970 PF07715 TonB-dependent Receptor Plug Domain CLM98_13975 PF00326 Prolyl oligopeptidase family CLM98_13975 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CLM98_13980 PF04616 Glycosyl hydrolases family 43 CLM98_13985 PF00754 F5/8 type C domain CLM98_13985 PF07532 CLM98_13985 CLM98_13995 PF00593 TonB dependent receptor CLM98_13995 PF07715 TonB-dependent Receptor Plug Domain CLM98_14005 PF00082 Subtilase family CLM98_14005 PF09286 Pro-kumamolisin, activation domain CLM98_14025 PF01301 Glycosyl hydrolases family 35 CLM98_14035 PF13520 Amino acid permease CLM98_14040 PF05960 Bacterial protein of unknown function (DUF885) CLM98_14045 PF05960 Bacterial protein of unknown function (DUF885) CLM98_14050 PF00557 Metallopeptidase family M24 CLM98_14050 PF01321 Creatinase/Prolidase N-terminal domain CLM98_14055 PF00171 Aldehyde dehydrogenase family CLM98_14060 PF00701 Dihydrodipicolinate synthetase family CLM98_14065 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM98_14070 PF13510 2Fe-2S iron-sulfur cluster binding domain CLM98_14075 PF01266 FAD dependent oxidoreductase CLM98_14080 PF05544 Proline racemase CLM98_14085 PF08448 PAS fold CLM98_14085 PF12833 Helix-turn-helix domain CLM98_14090 PF00448 SRP54-type protein, GTPase domain CLM98_14090 PF02881 SRP54-type protein, helical bundle domain CLM98_14100 PF00633 Helix-hairpin-helix motif CLM98_14100 PF00730 HhH-GPD superfamily base excision DNA repair protein CLM98_14100 PF14815 NUDIX domain CLM98_14105 PF04362 Bacterial Fe(2+) trafficking CLM98_14110 PF00072 Response regulator receiver domain CLM98_14110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_14110 PF13426 PAS domain CLM98_14120 PF10685 CLM98_14120 CLM98_14140 PF08212 Lipocalin-like domain CLM98_14145 PF03168 Late embryogenesis abundant protein CLM98_14155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLM98_14155 PF02770 Acyl-CoA dehydrogenase, middle domain CLM98_14155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLM98_14155 PF12418 CLM98_14155 CLM98_14155 PF12806 CLM98_14155 CLM98_14160 PF14279 CLM98_14160 CLM98_14165 PF02779 Transketolase, pyrimidine binding domain CLM98_14165 PF02780 Transketolase, C-terminal domain CLM98_14165 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CLM98_14170 PF04101 Glycosyltransferase family 28 C-terminal domain CLM98_14180 PF13506 Glycosyl transferase family 21 CLM98_14185 PF01370 NAD dependent epimerase/dehydratase family CLM98_14190 PF00753 Metallo-beta-lactamase superfamily CLM98_14195 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLM98_14195 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLM98_14200 PF01963 CLM98_14200 CLM98_14205 PF06172 Cupin superfamily (DUF985) CLM98_14210 PF03808 CLM98_14210 CLM98_14215 PF04230 CLM98_14215 CLM98_14225 PF13440 CLM98_14225 CLM98_14230 PF13692 Glycosyl transferases group 1 CLM98_14235 PF00534 Glycosyl transferases group 1 CLM98_14235 PF13439 Glycosyltransferase Family 4 CLM98_14240 PF01757 CLM98_14240 CLM98_14245 PF01757 CLM98_14245 CLM98_14255 PF02397 CLM98_14255 CLM98_14255 PF13727 CoA-binding domain CLM98_14260 PF02706 Chain length determinant protein CLM98_14260 PF13807 CLM98_14260 CLM98_14265 PF02563 Polysaccharide biosynthesis/export protein CLM98_14265 PF10531 SLBB domain CLM98_14275 PF13411 MerR HTH family regulatory protein CLM98_14280 PF00216 Bacterial DNA-binding protein CLM98_14285 PF01588 Putative tRNA binding domain CLM98_14285 PF03147 Ferredoxin-fold anticodon binding domain CLM98_14285 PF03483 B3/4 domain CLM98_14285 PF03484 tRNA synthetase B5 domain CLM98_14290 PF01409 tRNA synthetases class II core domain (F) CLM98_14290 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CLM98_14295 PF00453 Ribosomal protein L20 CLM98_14300 PF01632 Ribosomal protein L35 CLM98_14305 PF00707 Translation initiation factor IF-3, C-terminal domain CLM98_14305 PF05198 Translation initiation factor IF-3, N-terminal domain CLM98_14310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLM98_14310 PF02824 TGS domain CLM98_14310 PF03129 Anticodon binding domain CLM98_14310 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLM98_14315 PF00356 Bacterial regulatory proteins, lacI family CLM98_14315 PF13377 Periplasmic binding protein-like domain CLM98_14320 PF00128 Alpha amylase, catalytic domain CLM98_14325 PF07690 Major Facilitator Superfamily CLM98_14330 PF06202 Amylo-alpha-1,6-glucosidase CLM98_14335 PF10566 Glycoside hydrolase 97 CLM98_14335 PF14508 Glycosyl-hydrolase 97 N-terminal CLM98_14335 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation CLM98_14345 PF07715 TonB-dependent Receptor Plug Domain CLM98_14345 PF14905 Outer membrane protein beta-barrel family CLM98_14350 PF00128 Alpha amylase, catalytic domain CLM98_14360 PF07007 Protein of unknown function (DUF1311) CLM98_14365 PF13827 CLM98_14365 CLM98_14380 PF01471 Putative peptidoglycan binding domain CLM98_14390 PF13827 CLM98_14390 CLM98_14395 PF04610 CLM98_14395 CLM98_14405 PF03135 CLM98_14405 CLM98_14410 PF05101 CLM98_14410 CLM98_14415 PF04956 CLM98_14415 CLM98_14420 PF01464 Transglycosylase SLT domain CLM98_14425 PF00437 Type II/IV secretion system protein CLM98_14430 PF03743 Bacterial conjugation TrbI-like protein CLM98_14435 PF03524 Conjugal transfer protein CLM98_14440 PF04335 VirB8 protein CLM98_14445 PF10671 Toxin co-regulated pilus biosynthesis protein Q CLM98_14450 PF02534 Type IV secretory system Conjugative DNA transfer CLM98_14470 PF00271 Helicase conserved C-terminal domain CLM98_14470 PF02151 UvrB/uvrC motif CLM98_14470 PF04851 Type III restriction enzyme, res subunit CLM98_14470 PF12344 Ultra-violet resistance protein B CLM98_14475 PF07963 Prokaryotic N-terminal methylation motif CLM98_14475 PF12019 Type II transport protein GspH CLM98_14530 PF07791 CLM98_14530 CLM98_14545 PF01555 DNA methylase CLM98_14550 PF10122 CLM98_14550 CLM98_14555 PF04860 Phage portal protein CLM98_14560 PF03237 Terminase-like family CLM98_14560 PF06056 Putative ATPase subunit of terminase (gpP-like) CLM98_14560 PF17289 CLM98_14560 CLM98_14565 PF05929 CLM98_14565 CLM98_14570 PF05125 CLM98_14570 CLM98_14575 PF05944 CLM98_14575 CLM98_14580 PF05926 CLM98_14580 CLM98_14585 PF05489 Phage Tail Protein X CLM98_14590 PF16931 CLM98_14590 CLM98_14595 PF05449 CLM98_14595 CLM98_14610 PF06891 CLM98_14610 CLM98_14615 PF05069 CLM98_14615 CLM98_14625 PF04865 CLM98_14625 CLM98_14630 PF09684 CLM98_14630 CLM98_14665 PF07963 Prokaryotic N-terminal methylation motif CLM98_14665 PF16732 CLM98_14665 CLM98_14670 PF05567 Neisseria PilC beta-propeller domain CLM98_14675 PF13681 CLM98_14675 CLM98_14675 PF14341 CLM98_14675 CLM98_14680 PF07963 Prokaryotic N-terminal methylation motif CLM98_14680 PF16074 CLM98_14680 CLM98_14685 PF07963 Prokaryotic N-terminal methylation motif CLM98_14690 PF07963 Prokaryotic N-terminal methylation motif CLM98_14690 PF12019 Type II transport protein GspH CLM98_14695 PF06580 CLM98_14695 CLM98_14700 PF03641 Possible lysine decarboxylase CLM98_14700 PF11892 Domain of unknown function (DUF3412) CLM98_14700 PF14793 Domain of unknown function (DUF4478) CLM98_14705 PF07715 TonB-dependent Receptor Plug Domain CLM98_14705 PF13620 Carboxypeptidase regulatory-like domain CLM98_14715 PF01914 CLM98_14715 CLM98_14720 PF00106 short chain dehydrogenase CLM98_14725 PF00462 Glutaredoxin CLM98_14730 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CLM98_14730 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CLM98_14735 PF02222 ATP-grasp domain CLM98_14740 PF00731 AIR carboxylase CLM98_14745 PF03966 Trm112p-like protein CLM98_14750 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CLM98_14750 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CLM98_14755 PF10030 CLM98_14755 CLM98_14760 PF00013 KH domain CLM98_14760 PF00575 S1 RNA binding domain CLM98_14760 PF01138 3' exoribonuclease family, domain 1 CLM98_14760 PF03725 3' exoribonuclease family, domain 2 CLM98_14760 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CLM98_14765 PF00312 Ribosomal protein S15 CLM98_14770 PF01509 TruB family pseudouridylate synthase (N terminal domain) CLM98_14770 PF09157 Pseudouridine synthase II TruB, C-terminal CLM98_14770 PF16198 CLM98_14770 CLM98_14775 PF02033 Ribosome-binding factor A CLM98_14780 PF00009 Elongation factor Tu GTP binding domain CLM98_14780 PF04760 Translation initiation factor IF-2, N-terminal region CLM98_14780 PF08364 CLM98_14780 CLM98_14780 PF11987 Translation-initiation factor 2 CLM98_14785 PF00575 S1 RNA binding domain CLM98_14785 PF08529 NusA N-terminal domain CLM98_14785 PF13184 NusA-like KH domain CLM98_14785 PF14520 Helix-hairpin-helix domain CLM98_14790 PF02576 Uncharacterised BCR, YhbC family COG0779 CLM98_14790 PF17384 CLM98_14790 CLM98_14800 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CLM98_14805 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CLM98_14810 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CLM98_14810 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CLM98_14815 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CLM98_14820 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CLM98_14825 PF12838 4Fe-4S dicluster domain CLM98_14830 PF00146 NADH dehydrogenase CLM98_14835 PF00384 Molybdopterin oxidoreductase CLM98_14835 PF01568 Molydopterin dinucleotide binding domain CLM98_14835 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CLM98_14835 PF13510 2Fe-2S iron-sulfur cluster binding domain CLM98_14840 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLM98_14840 PF10531 SLBB domain CLM98_14840 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CLM98_14845 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin CLM98_14850 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CLM98_14855 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CLM98_14860 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CLM98_14865 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CLM98_14875 PF03840 Preprotein translocase SecG subunit CLM98_14880 PF00121 Triosephosphate isomerase CLM98_14885 PF00106 short chain dehydrogenase CLM98_14890 PF01152 Bacterial-like globin CLM98_14895 PF11231 CLM98_14895 CLM98_14900 PF00563 EAL domain CLM98_14900 PF00672 HAMP domain CLM98_14900 PF00990 GGDEF domain CLM98_14900 PF14827 Sensory domain of two-component sensor kinase CLM98_14910 PF03171 2OG-Fe(II) oxygenase superfamily CLM98_14910 PF14226 non-haem dioxygenase in morphine synthesis N-terminal CLM98_14915 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLM98_14915 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLM98_14915 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLM98_14915 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLM98_14920 PF01039 Carboxyl transferase domain CLM98_14925 PF00290 Tryptophan synthase alpha chain CLM98_14935 PF00291 Pyridoxal-phosphate dependent enzyme CLM98_14940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_14940 PF03466 LysR substrate binding domain CLM98_14945 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CLM98_14950 PF01416 tRNA pseudouridine synthase CLM98_14955 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLM98_14970 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLM98_14970 PF02774 Semialdehyde dehydrogenase, dimerisation domain CLM98_14975 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLM98_14975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLM98_14980 PF01264 Chorismate synthase CLM98_14985 PF05175 Methyltransferase small domain CLM98_14990 PF02630 SCO1/SenC CLM98_14995 PF02666 CLM98_14995 CLM98_15000 PF01464 Transglycosylase SLT domain CLM98_15000 PF01476 LysM domain CLM98_15010 PF05872 CLM98_15010 CLM98_15015 PF00293 NUDIX domain CLM98_15030 PF01694 Rhomboid family CLM98_15035 PF01272 Transcription elongation factor, GreA/GreB, C-term CLM98_15035 PF03449 Transcription elongation factor, N-terminal CLM98_15040 PF00919 Uncharacterized protein family UPF0004 CLM98_15040 PF04055 Radical SAM superfamily CLM98_15045 PF01738 Dienelactone hydrolase family CLM98_15050 PF01230 HIT domain CLM98_15065 PF00692 dUTPase CLM98_15075 PF10609 ParA/MinD ATPase like CLM98_15080 PF00593 TonB dependent receptor CLM98_15080 PF07715 TonB-dependent Receptor Plug Domain CLM98_15085 PF00593 TonB dependent receptor CLM98_15085 PF07715 TonB-dependent Receptor Plug Domain CLM98_15090 PF01593 Flavin containing amine oxidoreductase CLM98_15095 PF01431 Peptidase family M13 CLM98_15095 PF05649 Peptidase family M13 CLM98_15105 PF01431 Peptidase family M13 CLM98_15105 PF05649 Peptidase family M13 CLM98_15110 PF01431 Peptidase family M13 CLM98_15110 PF05649 Peptidase family M13 CLM98_15115 PF01694 Rhomboid family CLM98_15120 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CLM98_15125 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLM98_15125 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM98_15130 PF01266 FAD dependent oxidoreductase CLM98_15135 PF04235 CLM98_15135 CLM98_15140 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLM98_15145 PF00877 NlpC/P60 family CLM98_15150 PF00877 NlpC/P60 family CLM98_15155 PF03061 Thioesterase superfamily CLM98_15160 PF13649 Methyltransferase domain CLM98_15165 PF00375 Sodium:dicarboxylate symporter family CLM98_15170 PF00245 Alkaline phosphatase CLM98_15180 PF01171 PP-loop family CLM98_15180 PF09179 TilS substrate binding domain CLM98_15180 PF11734 TilS substrate C-terminal domain CLM98_15185 PF02609 Exonuclease VII small subunit CLM98_15190 PF00348 Polyprenyl synthetase CLM98_15195 PF14521 Lysine-specific metallo-endopeptidase CLM98_15200 PF09685 CLM98_15200 CLM98_15205 PF01523 Putative modulator of DNA gyrase CLM98_15210 PF04751 Protein of unknown function (DUF615) CLM98_15215 PF01523 Putative modulator of DNA gyrase CLM98_15225 PF13116 CLM98_15225 CLM98_15225 PF13502 CLM98_15225 CLM98_15230 PF10150 Ribonuclease E/G family CLM98_15235 PF02545 Maf-like protein CLM98_15240 PF04402 Protein of unknown function (DUF541) CLM98_15245 PF00593 TonB dependent receptor CLM98_15245 PF07715 TonB-dependent Receptor Plug Domain CLM98_15245 PF13620 Carboxypeptidase regulatory-like domain CLM98_15250 PF03544 Gram-negative bacterial TonB protein C-terminal CLM98_15255 PF02590 Predicted SPOUT methyltransferase CLM98_15260 PF05787 Bacterial protein of unknown function (DUF839) CLM98_15260 PF10518 TAT (twin-arginine translocation) pathway signal sequence CLM98_15265 PF02410 Oligomerisation domain CLM98_15270 PF01467 Cytidylyltransferase CLM98_15275 PF06144 DNA polymerase III, delta subunit CLM98_15280 PF04390 Lipopolysaccharide-assembly CLM98_15285 PF00133 tRNA synthetases class I (I, L, M and V) CLM98_15285 PF08264 Anticodon-binding domain of tRNA CLM98_15285 PF13603 Leucyl-tRNA synthetase, Domain 2 CLM98_15290 PF06197 CLM98_15290 CLM98_15295 PF00085 Thioredoxin CLM98_15295 PF14559 Tetratricopeptide repeat CLM98_15295 PF14561 Tetratricopeptide repeat CLM98_15305 PF14539 Domain of unknown function (DUF4442) CLM98_15320 PF04070 CLM98_15320 CLM98_15325 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CLM98_15330 PF00892 EamA-like transporter family CLM98_15335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_15335 PF03466 LysR substrate binding domain CLM98_15350 PF14257 CLM98_15350 CLM98_15360 PF05960 Bacterial protein of unknown function (DUF885) CLM98_15365 PF00005 ABC transporter CLM98_15365 PF00664 ABC transporter transmembrane region CLM98_15370 PF07929 Plasmid pRiA4b ORF-3-like protein CLM98_15380 PF00873 AcrB/AcrD/AcrF family CLM98_15385 PF16576 CLM98_15385 CLM98_15390 PF06629 CLM98_15390 CLM98_15395 PF02321 Outer membrane efflux protein CLM98_15400 PF00072 Response regulator receiver domain CLM98_15400 PF00486 Transcriptional regulatory protein, C terminal CLM98_15405 PF00512 His Kinase A (phospho-acceptor) domain CLM98_15405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_15410 PF00999 Sodium/hydrogen exchanger family CLM98_15415 PF00144 Beta-lactamase CLM98_15415 PF11954 CLM98_15415 CLM98_15420 PF03737 Demethylmenaquinone methyltransferase CLM98_15430 PF01904 Protein of unknown function DUF72 CLM98_15435 PF00892 EamA-like transporter family CLM98_15440 PF00990 GGDEF domain CLM98_15440 PF01590 GAF domain CLM98_15445 PF00849 RNA pseudouridylate synthase CLM98_15445 PF01479 S4 domain CLM98_15450 PF00563 EAL domain CLM98_15450 PF00990 GGDEF domain CLM98_15450 PF08447 PAS fold CLM98_15455 PF00270 DEAD/DEAH box helicase CLM98_15455 PF00271 Helicase conserved C-terminal domain CLM98_15455 PF03880 DbpA RNA binding domain CLM98_15460 PF04542 Sigma-70 region 2 CLM98_15460 PF08281 Sigma-70, region 4 CLM98_15470 PF13275 S4 domain CLM98_15480 PF01124 MAPEG family CLM98_15485 PF13211 CLM98_15485 CLM98_15500 PF00730 HhH-GPD superfamily base excision DNA repair protein CLM98_15500 PF02805 Metal binding domain of Ada CLM98_15500 PF06029 AlkA N-terminal domain CLM98_15500 PF12833 Helix-turn-helix domain CLM98_15505 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CLM98_15505 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CLM98_15510 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase CLM98_15515 PF00654 Voltage gated chloride channel CLM98_15520 PF00107 Zinc-binding dehydrogenase CLM98_15520 PF08240 Alcohol dehydrogenase GroES-like domain CLM98_15525 PF17067 CLM98_15525 CLM98_15535 PF03203 CLM98_15535 CLM98_15540 PF00593 TonB dependent receptor CLM98_15540 PF07715 TonB-dependent Receptor Plug Domain CLM98_15545 PF00593 TonB dependent receptor CLM98_15545 PF07715 TonB-dependent Receptor Plug Domain CLM98_15550 PF00082 Subtilase family CLM98_15550 PF01483 Proprotein convertase P-domain CLM98_15560 PF00082 Subtilase family CLM98_15560 PF01483 Proprotein convertase P-domain CLM98_15570 PF00248 Aldo/keto reductase family CLM98_15580 PF07690 Major Facilitator Superfamily CLM98_15585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_15585 PF03466 LysR substrate binding domain CLM98_15595 PF06719 CLM98_15595 CLM98_15595 PF12833 Helix-turn-helix domain CLM98_15600 PF07883 Cupin domain CLM98_15605 PF00440 Bacterial regulatory proteins, tetR family CLM98_15610 PF02321 Outer membrane efflux protein CLM98_15615 PF00873 AcrB/AcrD/AcrF family CLM98_15620 PF00529 HlyD family secretion protein CLM98_15620 PF16576 CLM98_15620 CLM98_15625 PF00440 Bacterial regulatory proteins, tetR family CLM98_15625 PF14246 AefR-like transcriptional repressor, C-terminal region CLM98_15630 PF01475 Ferric uptake regulator family CLM98_15635 PF00749 tRNA synthetases class I (E and Q), catalytic domain CLM98_15640 PF12275 CLM98_15640 CLM98_15645 PF00795 Carbon-nitrogen hydrolase CLM98_15660 PF06123 CLM98_15660 CLM98_15665 PF00112 Papain family cysteine protease CLM98_15670 PF00512 His Kinase A (phospho-acceptor) domain CLM98_15670 PF00672 HAMP domain CLM98_15670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_15675 PF00072 Response regulator receiver domain CLM98_15675 PF00486 Transcriptional regulatory protein, C terminal CLM98_15680 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ CLM98_15685 PF13302 Acetyltransferase (GNAT) domain CLM98_15690 PF00270 DEAD/DEAH box helicase CLM98_15690 PF00271 Helicase conserved C-terminal domain CLM98_15690 PF02559 CarD-like/TRCF domain CLM98_15690 PF03461 TRCF domain CLM98_15705 PF14412 CLM98_15705 CLM98_15710 PF07791 CLM98_15710 CLM98_15715 PF08845 CLM98_15715 CLM98_15725 PF13466 STAS domain CLM98_15730 PF01584 CheW-like domain CLM98_15730 PF01627 Hpt domain CLM98_15730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_15730 PF02895 Signal transducing histidine kinase, homodimeric domain CLM98_15735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_15740 PF01584 CheW-like domain CLM98_15745 PF00072 Response regulator receiver domain CLM98_15745 PF00563 EAL domain CLM98_15750 PF01739 CheR methyltransferase, SAM binding domain CLM98_15750 PF03705 CheR methyltransferase, all-alpha domain CLM98_15755 PF00072 Response regulator receiver domain CLM98_15755 PF01339 CheB methylesterase CLM98_15760 PF13091 PLD-like domain CLM98_15765 PF01431 Peptidase family M13 CLM98_15765 PF05649 Peptidase family M13 CLM98_15775 PF00300 Histidine phosphatase superfamily (branch 1) CLM98_15780 PF04493 Endonuclease V CLM98_15790 PF02678 Pirin CLM98_15790 PF05726 Pirin C-terminal cupin domain CLM98_15800 PF02566 OsmC-like protein CLM98_15805 PF02678 Pirin CLM98_15805 PF05726 Pirin C-terminal cupin domain CLM98_15810 PF02554 CLM98_15810 CLM98_15810 PF13722 CLM98_15810 CLM98_15815 PF04328 CLM98_15815 CLM98_15830 PF13419 Haloacid dehalogenase-like hydrolase CLM98_15835 PF12796 Ankyrin repeats (3 copies) CLM98_15840 PF11187 Protein of unknown function (DUF2974) CLM98_15845 PF05684 CLM98_15845 CLM98_15860 PF12804 MobA-like NTP transferase domain CLM98_15875 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLM98_15875 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CLM98_15880 PF00941 FAD binding domain in molybdopterin dehydrogenase CLM98_15880 PF03450 CO dehydrogenase flavoprotein C-terminal domain CLM98_15885 PF00111 2Fe-2S iron-sulfur cluster binding domain CLM98_15885 PF01799 [2Fe-2S] binding domain CLM98_15890 PF00107 Zinc-binding dehydrogenase CLM98_15890 PF08240 Alcohol dehydrogenase GroES-like domain CLM98_15895 PF00990 GGDEF domain CLM98_15895 PF02743 Cache domain CLM98_15900 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CLM98_15900 PF04851 Type III restriction enzyme, res subunit CLM98_15910 PF02384 N-6 DNA Methylase CLM98_15910 PF12161 HsdM N-terminal domain CLM98_15925 PF00589 Phage integrase family CLM98_15930 PF00589 Phage integrase family CLM98_15935 PF00436 Single-strand binding protein family CLM98_15940 PF00348 Polyprenyl synthetase CLM98_15945 PF01738 Dienelactone hydrolase family CLM98_15955 PF02875 Mur ligase family, glutamate ligase domain CLM98_15955 PF08245 Mur ligase middle domain CLM98_15970 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CLM98_15970 PF00696 Amino acid kinase family CLM98_15970 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CLM98_15975 PF02567 Phenazine biosynthesis-like protein CLM98_15980 PF02567 Phenazine biosynthesis-like protein CLM98_15985 PF05433 CLM98_15985 CLM98_15990 PF02566 OsmC-like protein CLM98_15995 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLM98_15995 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLM98_16000 PF03652 Uncharacterised protein family (UPF0081) CLM98_16005 PF02622 Uncharacterized ACR, COG1678 CLM98_16015 PF03352 Methyladenine glycosylase CLM98_16020 PF01904 Protein of unknown function DUF72 CLM98_16025 PF03211 Pectate lyase CLM98_16030 PF00437 Type II/IV secretion system protein CLM98_16040 PF01168 Alanine racemase, N-terminal domain CLM98_16045 PF03807 NADP oxidoreductase coenzyme F420-dependent CLM98_16045 PF14748 Pyrroline-5-carboxylate reductase dimerisation CLM98_16050 PF00216 Bacterial DNA-binding protein CLM98_16055 PF01551 Peptidase family M23 CLM98_16060 PF12977 Domain of Unknown Function with PDB structure (DUF3861) CLM98_16070 PF07273 Protein of unknown function (DUF1439) CLM98_16075 PF01965 DJ-1/PfpI family CLM98_16080 PF00856 SET domain CLM98_16085 PF02082 Transcriptional regulator CLM98_16090 PF01458 Uncharacterized protein family (UPF0051) CLM98_16095 PF00005 ABC transporter CLM98_16100 PF01458 Uncharacterized protein family (UPF0051) CLM98_16105 PF00266 Aminotransferase class-V CLM98_16110 PF13673 Acetyltransferase (GNAT) domain CLM98_16115 PF00355 Rieske [2Fe-2S] domain CLM98_16120 PF00593 TonB dependent receptor CLM98_16120 PF07715 TonB-dependent Receptor Plug Domain CLM98_16125 PF13640 2OG-Fe(II) oxygenase superfamily CLM98_16130 PF08238 Sel1 repeat CLM98_16135 PF16357 CLM98_16135 CLM98_16140 PF10029 CLM98_16140 CLM98_16145 PF10670 CLM98_16145 CLM98_16150 PF02424 ApbE family CLM98_16155 PF00175 Oxidoreductase NAD-binding domain CLM98_16155 PF00258 Flavodoxin CLM98_16160 PF13202 EF hand CLM98_16160 PF13499 EF-hand domain pair CLM98_16165 PF05962 HutD CLM98_16170 PF12836 Helix-hairpin-helix motif CLM98_16175 PF01546 Peptidase family M20/M25/M40 CLM98_16175 PF07687 Peptidase dimerisation domain CLM98_16180 PF04226 CLM98_16180 CLM98_16185 PF01636 Phosphotransferase enzyme family CLM98_16190 PF00483 Nucleotidyl transferase CLM98_16195 PF00308 Bacterial dnaA protein CLM98_16200 PF01594 CLM98_16200 CLM98_16205 PF09839 CLM98_16205 CLM98_16210 PF00586 AIR synthase related protein, N-terminal domain CLM98_16210 PF02769 AIR synthase related protein, C-terminal domain CLM98_16220 PF00551 Formyl transferase CLM98_16225 PF11306 Protein of unknown function (DUF3108) CLM98_16230 PF11306 Protein of unknown function (DUF3108) CLM98_16240 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLM98_16245 PF01722 BolA-like protein CLM98_16250 PF00571 CBS domain CLM98_16250 PF01380 SIS domain CLM98_16255 PF08282 haloacid dehalogenase-like hydrolase CLM98_16260 PF06835 Lipopolysaccharide-assembly, LptC-related CLM98_16265 PF03968 OstA-like protein CLM98_16270 PF00005 ABC transporter CLM98_16270 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLM98_16275 PF00309 CLM98_16275 CLM98_16275 PF04552 Sigma-54, DNA binding domain CLM98_16275 PF04963 Sigma-54 factor, core binding domain CLM98_16280 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CLM98_16285 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLM98_16290 PF02603 HPr Serine kinase N terminus CLM98_16290 PF07475 HPr Serine kinase C-terminal domain CLM98_16295 PF03668 CLM98_16295 CLM98_16300 PF03610 PTS system fructose IIA component CLM98_16305 PF00381 PTS HPr component phosphorylation site CLM98_16310 PF00391 PEP-utilising enzyme, mobile domain CLM98_16310 PF02896 PEP-utilising enzyme, TIM barrel domain CLM98_16310 PF05524 PEP-utilising enzyme, N-terminal CLM98_16320 PF00571 CBS domain CLM98_16320 PF01769 Divalent cation transporter CLM98_16320 PF03448 MgtE intracellular N domain CLM98_16325 PF00326 Prolyl oligopeptidase family CLM98_16335 PF02322 CLM98_16335 CLM98_16340 PF01654 CLM98_16340 CLM98_16345 PF01244 Membrane dipeptidase (Peptidase family M19) CLM98_16350 PF00324 Amino acid permease CLM98_16360 PF00544 Pectate lyase CLM98_16370 PF00561 alpha/beta hydrolase fold CLM98_16380 PF00196 Bacterial regulatory proteins, luxR family CLM98_16380 PF03472 Autoinducer binding domain CLM98_16385 PF13520 Amino acid permease CLM98_16395 PF01764 Lipase (class 3) CLM98_16405 PF13365 Trypsin-like peptidase domain CLM98_16420 PF12706 Beta-lactamase superfamily domain CLM98_16425 PF04820 Tryptophan halogenase CLM98_16430 PF13621 Cupin-like domain CLM98_16435 PF07277 CLM98_16435 CLM98_16440 PF00593 TonB dependent receptor CLM98_16440 PF07715 TonB-dependent Receptor Plug Domain CLM98_16450 PF01433 Peptidase family M1 CLM98_16455 PF00376 MerR family regulatory protein CLM98_16455 PF09278 MerR, DNA binding CLM98_16460 PF07690 Major Facilitator Superfamily CLM98_16470 PF03738 Glutathionylspermidine synthase preATP-grasp CLM98_16475 PF06693 CLM98_16475 CLM98_16480 PF03994 CLM98_16480 CLM98_16485 PF10679 CLM98_16485 CLM98_16490 PF07885 Ion channel CLM98_16495 PF04012 CLM98_16495 CLM98_16500 PF09938 CLM98_16500 CLM98_16505 PF01243 Pyridoxamine 5'-phosphate oxidase CLM98_16505 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CLM98_16510 PF01202 Shikimate kinase CLM98_16515 PF01761 3-dehydroquinate synthase CLM98_16525 PF01208 Uroporphyrinogen decarboxylase (URO-D) CLM98_16530 PF11747 CLM98_16530 CLM98_16535 PF11747 CLM98_16535 CLM98_16540 PF11747 CLM98_16540 CLM98_16545 PF11747 CLM98_16545 CLM98_16555 PF11747 CLM98_16555 CLM98_16560 PF11747 CLM98_16560 CLM98_16580 PF08924 Domain of unknown function (DUF1906) CLM98_16595 PF12833 Helix-turn-helix domain CLM98_16595 PF14532 Sigma-54 interaction domain CLM98_16600 PF07690 Major Facilitator Superfamily CLM98_16605 PF00072 Response regulator receiver domain CLM98_16605 PF00512 His Kinase A (phospho-acceptor) domain CLM98_16605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_16605 PF07494 Two component regulator propeller CLM98_16605 PF07495 Y_Y_Y domain CLM98_16610 PF00072 Response regulator receiver domain CLM98_16610 PF00512 His Kinase A (phospho-acceptor) domain CLM98_16610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_16610 PF07494 Two component regulator propeller CLM98_16610 PF07495 Y_Y_Y domain CLM98_16620 PF00072 Response regulator receiver domain CLM98_16620 PF00512 His Kinase A (phospho-acceptor) domain CLM98_16620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_16620 PF07494 Two component regulator propeller CLM98_16620 PF07495 Y_Y_Y domain CLM98_16625 PF04264 YceI-like domain CLM98_16630 PF01292 Prokaryotic cytochrome b561 CLM98_16635 PF04264 YceI-like domain CLM98_16640 PF05768 Glutaredoxin-like domain (DUF836) CLM98_16645 PF03313 CLM98_16645 CLM98_16645 PF03315 Serine dehydratase beta chain CLM98_16650 PF00561 alpha/beta hydrolase fold CLM98_16660 PF00742 Homoserine dehydrogenase CLM98_16660 PF03447 Homoserine dehydrogenase, NAD binding domain CLM98_16665 PF01053 Cys/Met metabolism PLP-dependent enzyme CLM98_16670 PF00561 alpha/beta hydrolase fold CLM98_16675 PF01551 Peptidase family M23 CLM98_16680 PF00009 Elongation factor Tu GTP binding domain CLM98_16680 PF16658 CLM98_16680 CLM98_16685 PF03006 CLM98_16685 CLM98_16690 PF05170 CLM98_16690 CLM98_16695 PF00571 CBS domain CLM98_16700 PF00535 Glycosyl transferase family 2 CLM98_16705 PF00912 Transglycosylase CLM98_16710 PF01430 Hsp33 protein CLM98_16720 PF00593 TonB dependent receptor CLM98_16720 PF07715 TonB-dependent Receptor Plug Domain CLM98_16725 PF13181 Tetratricopeptide repeat CLM98_16725 PF13469 Sulfotransferase family CLM98_16730 PF00440 Bacterial regulatory proteins, tetR family CLM98_16735 PF12146 Putative lysophospholipase CLM98_16740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLM98_16740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLM98_16740 PF09317 CLM98_16740 CLM98_16745 PF06993 CLM98_16745 CLM98_16750 PF07690 Major Facilitator Superfamily CLM98_16755 PF00144 Beta-lactamase CLM98_16765 PF01597 Glycine cleavage H-protein CLM98_16770 PF01571 Aminomethyltransferase folate-binding domain CLM98_16770 PF08669 Glycine cleavage T-protein C-terminal barrel domain CLM98_16785 PF02694 CLM98_16785 CLM98_16790 PF03819 MazG nucleotide pyrophosphohydrolase domain CLM98_16795 PF00459 Inositol monophosphatase family CLM98_16800 PF00293 NUDIX domain CLM98_16805 PF00202 Aminotransferase class-III CLM98_16810 PF04452 RNA methyltransferase CLM98_16815 PF02685 Glucokinase CLM98_16820 PF00593 TonB dependent receptor CLM98_16820 PF07715 TonB-dependent Receptor Plug Domain CLM98_16825 PF01120 Alpha-L-fucosidase CLM98_16825 PF16757 CLM98_16825 CLM98_16830 PF00704 Glycosyl hydrolases family 18 CLM98_16840 PF00703 Glycosyl hydrolases family 2 CLM98_16845 PF00933 Glycosyl hydrolase family 3 N terminal domain CLM98_16845 PF01915 Glycosyl hydrolase family 3 C-terminal domain CLM98_16845 PF07691 PA14 domain CLM98_16845 PF14310 Fibronectin type III-like domain CLM98_16850 PF00593 TonB dependent receptor CLM98_16850 PF07715 TonB-dependent Receptor Plug Domain CLM98_16850 PF13620 Carboxypeptidase regulatory-like domain CLM98_16855 PF01301 Glycosyl hydrolases family 35 CLM98_16860 PF13520 Amino acid permease CLM98_16870 PF02056 Family 4 glycosyl hydrolase CLM98_16870 PF11975 Family 4 glycosyl hydrolase C-terminal domain CLM98_16875 PF06824 Protein of unknown function (DUF1237) CLM98_16880 PF07971 Glycosyl hydrolase family 92 CLM98_16885 PF01301 Glycosyl hydrolases family 35 CLM98_16900 PF11747 CLM98_16900 CLM98_16910 PF13088 BNR repeat-like domain CLM98_16915 PF13855 Leucine rich repeat CLM98_16920 PF03932 CutC family CLM98_16925 PF01112 Asparaginase CLM98_16945 PF13302 Acetyltransferase (GNAT) domain CLM98_16950 PF01584 CheW-like domain CLM98_16955 PF01339 CheB methylesterase CLM98_16960 PF00072 Response regulator receiver domain CLM98_16960 PF01584 CheW-like domain CLM98_16960 PF01627 Hpt domain CLM98_16960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_16960 PF02895 Signal transducing histidine kinase, homodimeric domain CLM98_16965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_16970 PF01584 CheW-like domain CLM98_16975 PF00072 Response regulator receiver domain CLM98_16980 PF00072 Response regulator receiver domain CLM98_16985 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CLM98_16985 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CLM98_16990 PF03544 Gram-negative bacterial TonB protein C-terminal CLM98_16995 PF03747 ADP-ribosylglycohydrolase CLM98_17000 PF00814 Glycoprotease family CLM98_17005 PF13307 Helicase C-terminal domain CLM98_17015 PF00905 Penicillin binding protein transpeptidase domain CLM98_17015 PF00912 Transglycosylase CLM98_17015 PF14814 Bifunctional transglycosylase second domain CLM98_17020 PF00535 Glycosyl transferase family 2 CLM98_17020 PF13692 Glycosyl transferases group 1 CLM98_17040 PF02824 TGS domain CLM98_17040 PF04607 Region found in RelA / SpoT proteins CLM98_17040 PF13291 ACT domain CLM98_17040 PF13328 HD domain CLM98_17045 PF08042 CLM98_17045 CLM98_17050 PF12706 Beta-lactamase superfamily domain CLM98_17055 PF03070 TENA/THI-4/PQQC family CLM98_17060 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CLM98_17065 PF04055 Radical SAM superfamily CLM98_17065 PF13186 Iron-sulfur cluster-binding domain CLM98_17065 PF13353 4Fe-4S single cluster domain CLM98_17075 PF10142 PhoPQ-activated pathogenicity-related protein CLM98_17080 PF02685 Glucokinase CLM98_17085 PF00593 TonB dependent receptor CLM98_17085 PF07715 TonB-dependent Receptor Plug Domain CLM98_17095 PF00270 DEAD/DEAH box helicase CLM98_17095 PF00271 Helicase conserved C-terminal domain CLM98_17095 PF04408 Helicase associated domain (HA2) CLM98_17095 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CLM98_17095 PF11898 CLM98_17095 CLM98_17100 PF00210 Ferritin-like domain CLM98_17110 PF00270 DEAD/DEAH box helicase CLM98_17110 PF00271 Helicase conserved C-terminal domain CLM98_17110 PF00570 HRDC domain CLM98_17110 PF09382 RQC domain CLM98_17110 PF16124 CLM98_17110 CLM98_17120 PF00072 Response regulator receiver domain CLM98_17130 PF01479 S4 domain CLM98_17145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_17145 PF00672 HAMP domain CLM98_17145 PF12729 CLM98_17145 CLM98_17150 PF01810 CLM98_17150 CLM98_17155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_17155 PF03466 LysR substrate binding domain CLM98_17160 PF00072 Response regulator receiver domain CLM98_17165 PF07536 CLM98_17165 CLM98_17165 PF08448 PAS fold CLM98_17170 PF06508 Queuosine biosynthesis protein QueC CLM98_17180 PF04055 Radical SAM superfamily CLM98_17180 PF13394 4Fe-4S single cluster domain CLM98_17185 PF13525 Outer membrane lipoprotein CLM98_17185 PF16331 CLM98_17185 CLM98_17190 PF00691 OmpA family CLM98_17195 PF04052 TolB amino-terminal domain CLM98_17195 PF07676 WD40-like Beta Propeller Repeat CLM98_17200 PF13103 TonB C terminal CLM98_17205 PF02472 Biopolymer transport protein ExbD/TolR CLM98_17210 PF01618 CLM98_17210 CLM98_17215 PF03061 Thioesterase superfamily CLM98_17220 PF05491 Holliday junction DNA helicase ruvB C-terminus CLM98_17220 PF05496 Holliday junction DNA helicase ruvB N-terminus CLM98_17230 PF02705 CLM98_17230 CLM98_17235 PF01330 RuvA N terminal domain CLM98_17235 PF07499 RuvA, C-terminal domain CLM98_17235 PF14520 Helix-hairpin-helix domain CLM98_17240 PF02075 Crossover junction endodeoxyribonuclease RuvC CLM98_17245 PF01709 Transcriptional regulator CLM98_17255 PF00583 Acetyltransferase (GNAT) family CLM98_17260 PF00152 tRNA synthetases class II (D, K and N) CLM98_17260 PF01336 OB-fold nucleic acid binding domain CLM98_17260 PF02938 GAD domain CLM98_17265 PF11218 CLM98_17265 CLM98_17270 PF09723 CLM98_17270 CLM98_17275 PF07690 Major Facilitator Superfamily CLM98_17280 PF00593 TonB dependent receptor CLM98_17280 PF07715 TonB-dependent Receptor Plug Domain CLM98_17285 PF04185 Phosphoesterase family CLM98_17290 PF04185 Phosphoesterase family CLM98_17290 PF05506 CLM98_17290 CLM98_17305 PF13354 Beta-lactamase enzyme family CLM98_17310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_17310 PF03466 LysR substrate binding domain CLM98_17315 PF14317 CLM98_17315 CLM98_17320 PF00005 ABC transporter CLM98_17320 PF12848 ABC transporter CLM98_17320 PF16326 CLM98_17320 CLM98_17325 PF00593 TonB dependent receptor CLM98_17325 PF07715 TonB-dependent Receptor Plug Domain CLM98_17335 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLM98_17340 PF00593 TonB dependent receptor CLM98_17340 PF07715 TonB-dependent Receptor Plug Domain CLM98_17345 PF00593 TonB dependent receptor CLM98_17345 PF07715 TonB-dependent Receptor Plug Domain CLM98_17350 PF00067 Cytochrome P450 CLM98_17360 PF00999 Sodium/hydrogen exchanger family CLM98_17360 PF02254 TrkA-N domain CLM98_17380 PF03328 HpcH/HpaI aldolase/citrate lyase family CLM98_17385 PF00593 TonB dependent receptor CLM98_17385 PF07715 TonB-dependent Receptor Plug Domain CLM98_17390 PF02655 ATP-grasp domain CLM98_17395 PF04183 IucA / IucC family CLM98_17395 PF06276 Ferric iron reductase FhuF-like transporter CLM98_17400 PF07690 Major Facilitator Superfamily CLM98_17405 PF04183 IucA / IucC family CLM98_17405 PF06276 Ferric iron reductase FhuF-like transporter CLM98_17410 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CLM98_17410 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CLM98_17425 PF02654 CLM98_17425 CLM98_17430 PF00300 Histidine phosphatase superfamily (branch 1) CLM98_17435 PF02277 Phosphoribosyltransferase CLM98_17440 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CLM98_17445 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLM98_17445 PF07685 CobB/CobQ-like glutamine amidotransferase domain CLM98_17450 PF00155 Aminotransferase class I and II CLM98_17455 PF03186 CLM98_17455 CLM98_17460 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CLM98_17460 PF12557 Cob(I)alamin adenosyltransferase N terminal CLM98_17475 PF00593 TonB dependent receptor CLM98_17475 PF07715 TonB-dependent Receptor Plug Domain CLM98_17480 PF00004 ATPase family associated with various cellular activities (AAA) CLM98_17480 PF02861 Clp amino terminal domain CLM98_17480 PF07724 AAA domain (Cdc48 subfamily) CLM98_17480 PF10431 C-terminal, D2-small domain, of ClpB protein CLM98_17485 PF00005 ABC transporter CLM98_17490 PF00528 Binding-protein-dependent transport system inner membrane component CLM98_17495 PF09084 NMT1/THI5 like CLM98_17500 PF00248 Aldo/keto reductase family CLM98_17505 PF00296 Luciferase-like monooxygenase CLM98_17510 PF00593 TonB dependent receptor CLM98_17510 PF07715 TonB-dependent Receptor Plug Domain CLM98_17515 PF01541 GIY-YIG catalytic domain CLM98_17520 PF14497 Glutathione S-transferase, C-terminal domain CLM98_17525 PF11219 CLM98_17525 CLM98_17530 PF07007 Protein of unknown function (DUF1311) CLM98_17545 PF12098 CLM98_17545 CLM98_17550 PF00593 TonB dependent receptor CLM98_17550 PF07715 TonB-dependent Receptor Plug Domain CLM98_17555 PF02358 Trehalose-phosphatase CLM98_17560 PF00723 Glycosyl hydrolases family 15 CLM98_17565 PF00982 Glycosyltransferase family 20 CLM98_17570 PF01011 PQQ enzyme repeat CLM98_17570 PF13360 PQQ-like domain CLM98_17580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_17585 PF04134 CLM98_17585 CLM98_17590 PF13761 CLM98_17590 CLM98_17595 PF02578 Multi-copper polyphenol oxidoreductase laccase CLM98_17600 PF00849 RNA pseudouridylate synthase CLM98_17605 PF13525 Outer membrane lipoprotein CLM98_17615 PF00795 Carbon-nitrogen hydrolase CLM98_17615 PF02540 NAD synthase CLM98_17620 PF04480 Protein of unknown function (DUF559) CLM98_17655 PF11740 CLM98_17655 CLM98_17660 PF01129 NAD:arginine ADP-ribosyltransferase CLM98_17675 PF12760 Transposase zinc-ribbon domain CLM98_17675 PF12762 CLM98_17675 CLM98_17685 PF00549 CoA-ligase CLM98_17685 PF02629 CoA binding domain CLM98_17690 PF00549 CoA-ligase CLM98_17690 PF08442 ATP-grasp domain CLM98_17695 PF00512 His Kinase A (phospho-acceptor) domain CLM98_17695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_17700 PF00072 Response regulator receiver domain CLM98_17700 PF00158 Sigma-54 interaction domain CLM98_17700 PF02954 Bacterial regulatory protein, Fis family CLM98_17720 PF00437 Type II/IV secretion system protein CLM98_17720 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CLM98_17725 PF00114 Pilin (bacterial filament) CLM98_17725 PF07963 Prokaryotic N-terminal methylation motif CLM98_17730 PF00114 Pilin (bacterial filament) CLM98_17730 PF07963 Prokaryotic N-terminal methylation motif CLM98_17735 PF00482 Type II secretion system (T2SS), protein F CLM98_17740 PF01478 Type IV leader peptidase family CLM98_17740 PF06750 CLM98_17740 CLM98_17745 PF01121 Dephospho-CoA kinase CLM98_17750 PF05593 CLM98_17750 CLM98_17760 PF08845 CLM98_17760 CLM98_17775 PF00512 His Kinase A (phospho-acceptor) domain CLM98_17775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_17780 PF00072 Response regulator receiver domain CLM98_17780 PF00486 Transcriptional regulatory protein, C terminal CLM98_17795 PF00128 Alpha amylase, catalytic domain CLM98_17795 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CLM98_17805 PF00816 H-NS histone family CLM98_17815 PF00565 Staphylococcal nuclease homologue CLM98_17830 PF06412 CLM98_17830 CLM98_17850 PF14412 CLM98_17850 CLM98_17855 PF07791 CLM98_17855 CLM98_17865 PF04002 RadC-like JAB domain CLM98_17890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_17890 PF08448 PAS fold CLM98_17895 PF00072 Response regulator receiver domain CLM98_17915 PF04940 Sensors of blue-light using FAD CLM98_17925 PF01520 N-acetylmuramoyl-L-alanine amidase CLM98_17955 PF16162 CLM98_17955 CLM98_17965 PF13560 Helix-turn-helix domain CLM98_17985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_17985 PF08448 PAS fold CLM98_17995 PF02517 CAAX protease self-immunity CLM98_18015 PF13676 TIR domain CLM98_18025 PF00589 Phage integrase family CLM98_18035 PF00657 GDSL-like Lipase/Acylhydrolase CLM98_18035 PF03797 Autotransporter beta-domain CLM98_18040 PF02597 ThiS family CLM98_18045 PF05690 Thiazole biosynthesis protein ThiG CLM98_18055 PF02390 Putative methyltransferase CLM98_18060 PF02080 TrkA-C domain CLM98_18060 PF03600 Citrate transporter CLM98_18065 PF00355 Rieske [2Fe-2S] domain CLM98_18080 PF01557 Fumarylacetoacetate (FAA) hydrolase family CLM98_18085 PF01741 Large-conductance mechanosensitive channel, MscL CLM98_18090 PF04389 Peptidase family M28 CLM98_18095 PF00356 Bacterial regulatory proteins, lacI family CLM98_18095 PF13377 Periplasmic binding protein-like domain CLM98_18100 PF00593 TonB dependent receptor CLM98_18100 PF07715 TonB-dependent Receptor Plug Domain CLM98_18105 PF00703 Glycosyl hydrolases family 2 CLM98_18105 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CLM98_18105 PF02837 Glycosyl hydrolases family 2, sugar binding domain CLM98_18105 PF13385 Concanavalin A-like lectin/glucanases superfamily CLM98_18110 PF10566 Glycoside hydrolase 97 CLM98_18110 PF14508 Glycosyl-hydrolase 97 N-terminal CLM98_18110 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation CLM98_18115 PF03080 CLM98_18115 CLM98_18120 PF00135 Carboxylesterase family CLM98_18125 PF00588 SpoU rRNA Methylase family CLM98_18125 PF08032 RNA 2'-O ribose methyltransferase substrate binding CLM98_18130 PF13302 Acetyltransferase (GNAT) domain CLM98_18135 PF01433 Peptidase family M1 CLM98_18135 PF11838 ERAP1-like C-terminal domain CLM98_18150 PF07791 CLM98_18150 CLM98_18200 PF00873 AcrB/AcrD/AcrF family CLM98_18205 PF16576 CLM98_18205 CLM98_18210 PF00009 Elongation factor Tu GTP binding domain CLM98_18210 PF01583 Adenylylsulphate kinase CLM98_18215 PF01507 Phosphoadenosine phosphosulfate reductase family CLM98_18220 PF00175 Oxidoreductase NAD-binding domain CLM98_18220 PF00258 Flavodoxin CLM98_18220 PF00667 FAD binding domain CLM98_18225 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CLM98_18225 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLM98_18230 PF01507 Phosphoadenosine phosphosulfate reductase family CLM98_18235 PF03929 CLM98_18235 CLM98_18240 PF00593 TonB dependent receptor CLM98_18240 PF07715 TonB-dependent Receptor Plug Domain CLM98_18250 PF01590 GAF domain CLM98_18250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_18265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_18265 PF03466 LysR substrate binding domain CLM98_18270 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLM98_18270 PF13241 Putative NAD(P)-binding CLM98_18275 PF00291 Pyridoxal-phosphate dependent enzyme CLM98_18280 PF04191 Phospholipid methyltransferase CLM98_18285 PF01661 Macro domain CLM98_18290 PF00274 Fructose-bisphosphate aldolase class-I CLM98_18305 PF00224 Pyruvate kinase, barrel domain CLM98_18305 PF02887 Pyruvate kinase, alpha/beta domain CLM98_18310 PF13419 Haloacid dehalogenase-like hydrolase CLM98_18315 PF00162 Phosphoglycerate kinase CLM98_18330 PF10101 CLM98_18330 CLM98_18340 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLM98_18340 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CLM98_18345 PF08332 Calcium/calmodulin dependent protein kinase II Association CLM98_18350 PF03922 OmpW family CLM98_18355 PF03922 OmpW family CLM98_18360 PF02265 S1/P1 Nuclease CLM98_18365 PF00753 Metallo-beta-lactamase superfamily CLM98_18370 PF13531 Bacterial extracellular solute-binding protein CLM98_18375 PF00528 Binding-protein-dependent transport system inner membrane component CLM98_18380 PF00005 ABC transporter CLM98_18390 PF03544 Gram-negative bacterial TonB protein C-terminal CLM98_18390 PF05569 BlaR1 peptidase M56 CLM98_18395 PF03965 Penicillinase repressor CLM98_18400 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CLM98_18405 PF16670 CLM98_18405 CLM98_18410 PF00593 TonB dependent receptor CLM98_18410 PF07715 TonB-dependent Receptor Plug Domain CLM98_18415 PF01471 Putative peptidoglycan binding domain CLM98_18415 PF03734 L,D-transpeptidase catalytic domain CLM98_18420 PF01551 Peptidase family M23 CLM98_18430 PF00593 TonB dependent receptor CLM98_18430 PF07715 TonB-dependent Receptor Plug Domain CLM98_18435 PF12146 Putative lysophospholipase CLM98_18440 PF00456 Transketolase, thiamine diphosphate binding domain CLM98_18440 PF02779 Transketolase, pyrimidine binding domain CLM98_18440 PF02780 Transketolase, C-terminal domain CLM98_18445 PF00375 Sodium:dicarboxylate symporter family CLM98_18455 PF13584 CLM98_18455 CLM98_18460 PF00515 Tetratricopeptide repeat CLM98_18460 PF13519 von Willebrand factor type A domain CLM98_18465 PF00092 von Willebrand factor type A domain CLM98_18470 PF14316 CLM98_18470 CLM98_18475 PF01882 CLM98_18475 CLM98_18480 PF07726 ATPase family associated with various cellular activities (AAA) CLM98_18495 PF04351 Pilus assembly protein, PilP CLM98_18500 PF04350 Pilus assembly protein, PilO CLM98_18505 PF05137 CLM98_18505 CLM98_18510 PF11104 Type IV pilus assembly protein PilM; CLM98_18515 PF00905 Penicillin binding protein transpeptidase domain CLM98_18515 PF00912 Transglycosylase CLM98_18515 PF17092 CLM98_18515 CLM98_18525 PF00285 Citrate synthase CLM98_18530 PF01197 Ribosomal protein L31 CLM98_18535 PF01156 Inosine-uridine preferring nucleoside hydrolase CLM98_18540 PF00270 DEAD/DEAH box helicase CLM98_18540 PF00271 Helicase conserved C-terminal domain CLM98_18540 PF17191 CLM98_18540 CLM98_18545 PF01042 Endoribonuclease L-PSP CLM98_18550 PF02824 TGS domain CLM98_18550 PF04607 Region found in RelA / SpoT proteins CLM98_18550 PF13291 ACT domain CLM98_18550 PF13328 HD domain CLM98_18555 PF01192 RNA polymerase Rpb6 CLM98_18560 PF00625 Guanylate kinase CLM98_18565 PF03755 CLM98_18565 CLM98_18565 PF08340 CLM98_18565 CLM98_18570 PF01138 3' exoribonuclease family, domain 1 CLM98_18570 PF03725 3' exoribonuclease family, domain 2 CLM98_18575 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLM98_18580 PF01725 Ham1 family CLM98_18585 PF04055 Radical SAM superfamily CLM98_18585 PF06969 HemN C-terminal domain CLM98_18590 PF07793 CLM98_18590 CLM98_18595 PF07238 PilZ domain CLM98_18600 PF00557 Metallopeptidase family M24 CLM98_18610 PF00557 Metallopeptidase family M24 CLM98_18610 PF05195 Aminopeptidase P, N-terminal domain CLM98_18615 PF03695 Uncharacterised protein family (UPF0149) CLM98_18625 PF05164 Cell division protein ZapA CLM98_18635 PF01812 5-formyltetrahydrofolate cyclo-ligase family CLM98_18640 PF01878 EVE domain CLM98_18645 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CLM98_18650 PF02643 Uncharacterized ACR, COG1430 CLM98_18655 PF13369 CLM98_18655 CLM98_18655 PF13371 Tetratricopeptide repeat CLM98_18660 PF00301 Rubredoxin CLM98_18665 PF02581 Thiamine monophosphate synthase/TENI CLM98_18680 PF00202 Aminotransferase class-III CLM98_18685 PF00196 Bacterial regulatory proteins, luxR family CLM98_18685 PF13424 Tetratricopeptide repeat CLM98_18685 PF13481 AAA domain CLM98_18690 PF00127 Copper binding proteins, plastocyanin/azurin family CLM98_18695 PF00155 Aminotransferase class I and II CLM98_18700 PF01042 Endoribonuclease L-PSP CLM98_18705 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLM98_18710 PF01593 Flavin containing amine oxidoreductase CLM98_18715 PF00593 TonB dependent receptor CLM98_18715 PF07715 TonB-dependent Receptor Plug Domain CLM98_18725 PF00202 Aminotransferase class-III CLM98_18730 PF00520 Ion transport protein CLM98_18740 PF00106 short chain dehydrogenase CLM98_18750 PF01569 PAP2 superfamily CLM98_18750 PF09335 CLM98_18750 CLM98_18750 PF14067 CLM98_18750 CLM98_18755 PF01062 CLM98_18755 CLM98_18760 PF02190 ATP-dependent protease La (LON) domain CLM98_18765 PF01225 Mur ligase family, catalytic domain CLM98_18765 PF02875 Mur ligase family, glutamate ligase domain CLM98_18765 PF08245 Mur ligase middle domain CLM98_18770 PF00406 Adenylate kinase CLM98_18775 PF00365 Phosphofructokinase CLM98_18785 PF03030 Inorganic H+ pyrophosphatase CLM98_18795 PF00719 Inorganic pyrophosphatase CLM98_18800 PF08668 HDOD domain CLM98_18805 PF00593 TonB dependent receptor CLM98_18805 PF07715 TonB-dependent Receptor Plug Domain CLM98_18810 PF12833 Helix-turn-helix domain CLM98_18815 PF00486 Transcriptional regulatory protein, C terminal CLM98_18815 PF07676 WD40-like Beta Propeller Repeat CLM98_18820 PF01964 ThiC family CLM98_18820 PF13667 ThiC-associated domain CLM98_18830 PF00593 TonB dependent receptor CLM98_18830 PF07715 TonB-dependent Receptor Plug Domain CLM98_18835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_18840 PF01019 Gamma-glutamyltranspeptidase CLM98_18845 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CLM98_18845 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain CLM98_18850 PF00205 Thiamine pyrophosphate enzyme, central domain CLM98_18850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLM98_18850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLM98_18855 PF13710 ACT domain CLM98_18860 PF00291 Pyridoxal-phosphate dependent enzyme CLM98_18865 PF00682 HMGL-like CLM98_18865 PF08502 LeuA allosteric (dimerisation) domain CLM98_18870 PF00180 Isocitrate/isopropylmalate dehydrogenase CLM98_18875 PF00694 Aconitase C-terminal domain CLM98_18880 PF00330 Aconitase family (aconitate hydratase) CLM98_18885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_18885 PF03466 LysR substrate binding domain CLM98_18890 PF00990 GGDEF domain CLM98_18890 PF07494 Two component regulator propeller CLM98_18890 PF07495 Y_Y_Y domain CLM98_18895 PF00440 Bacterial regulatory proteins, tetR family CLM98_18895 PF14246 AefR-like transcriptional repressor, C-terminal region CLM98_18900 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CLM98_18905 PF02321 Outer membrane efflux protein CLM98_18910 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CLM98_18920 PF03279 CLM98_18920 CLM98_18925 PF04932 CLM98_18925 CLM98_18930 PF00534 Glycosyl transferases group 1 CLM98_18930 PF13439 Glycosyltransferase Family 4 CLM98_18935 PF10276 Zinc-finger domain CLM98_18940 PF07971 Glycosyl hydrolase family 92 CLM98_18945 PF00390 Malic enzyme, N-terminal domain CLM98_18945 PF01515 Phosphate acetyl/butaryl transferase CLM98_18945 PF03949 Malic enzyme, NAD binding domain CLM98_18950 PF00375 Sodium:dicarboxylate symporter family CLM98_18955 PF07396 Phosphate-selective porin O and P CLM98_18965 PF00072 Response regulator receiver domain CLM98_18965 PF00512 His Kinase A (phospho-acceptor) domain CLM98_18965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_18965 PF02743 Cache domain CLM98_18965 PF12860 CLM98_18965 CLM98_18970 PF00083 Sugar (and other) transporter CLM98_18975 PF13531 Bacterial extracellular solute-binding protein CLM98_18980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_18980 PF03466 LysR substrate binding domain CLM98_18990 PF00248 Aldo/keto reductase family CLM98_18995 PF12680 SnoaL-like domain CLM98_19000 PF11512 Agrobacterium tumefaciens protein Atu4866 CLM98_19005 PF00072 Response regulator receiver domain CLM98_19005 PF00196 Bacterial regulatory proteins, luxR family CLM98_19010 PF13531 Bacterial extracellular solute-binding protein CLM98_19015 PF00512 His Kinase A (phospho-acceptor) domain CLM98_19015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_19015 PF08521 CLM98_19015 CLM98_19020 PF00072 Response regulator receiver domain CLM98_19020 PF00486 Transcriptional regulatory protein, C terminal CLM98_19025 PF07396 Phosphate-selective porin O and P CLM98_19035 PF03600 Citrate transporter CLM98_19040 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_19045 PF00356 Bacterial regulatory proteins, lacI family CLM98_19045 PF13377 Periplasmic binding protein-like domain CLM98_19050 PF07690 Major Facilitator Superfamily CLM98_19055 PF00593 TonB dependent receptor CLM98_19055 PF07715 TonB-dependent Receptor Plug Domain CLM98_19060 PF00128 Alpha amylase, catalytic domain CLM98_19065 PF01965 DJ-1/PfpI family CLM98_19070 PF08014 CLM98_19070 CLM98_19075 PF03193 Protein of unknown function, DUF258 CLM98_19080 PF00155 Aminotransferase class I and II CLM98_19085 PF13472 GDSL-like Lipase/Acylhydrolase family CLM98_19090 PF08242 Methyltransferase domain CLM98_19105 PF00593 TonB dependent receptor CLM98_19105 PF07715 TonB-dependent Receptor Plug Domain CLM98_19110 PF01522 Polysaccharide deacetylase CLM98_19115 PF00462 Glutaredoxin CLM98_19115 PF00581 Rhodanese-like domain CLM98_19125 PF06041 Bacterial protein of unknown function (DUF924) CLM98_19145 PF09284 Rhamnogalacturonase B, N-terminal CLM98_19145 PF14683 Polysaccharide lyase family 4, domain III CLM98_19145 PF14686 Polysaccharide lyase family 4, domain II CLM98_19155 PF02645 Uncharacterised protein, DegV family COG1307 CLM98_19160 PF01327 Polypeptide deformylase CLM98_19170 PF03960 ArsC family CLM98_19180 PF02225 PA domain CLM98_19190 PF05420 CLM98_19190 CLM98_19190 PF13432 Tetratricopeptide repeat CLM98_19190 PF14559 Tetratricopeptide repeat CLM98_19195 PF01270 Glycosyl hydrolases family 8 CLM98_19200 PF03170 Bacterial cellulose synthase subunit CLM98_19205 PF00535 Glycosyl transferase family 2 CLM98_19205 PF07238 PilZ domain CLM98_19220 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CLM98_19240 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CLM98_19240 PF13641 Glycosyltransferase like family 2 CLM98_19250 PF00535 Glycosyl transferase family 2 CLM98_19260 PF01636 Phosphotransferase enzyme family CLM98_19270 PF04973 CLM98_19270 CLM98_19275 PF00392 Bacterial regulatory proteins, gntR family CLM98_19275 PF07702 UTRA domain CLM98_19285 PF00263 CLM98_19285 CLM98_19285 PF03958 Bacterial type II/III secretion system short domain CLM98_19295 PF10741 CLM98_19295 CLM98_19300 PF05137 CLM98_19300 CLM98_19305 PF03934 Type II secretion system (T2SS), protein K CLM98_19315 PF07963 Prokaryotic N-terminal methylation motif CLM98_19320 PF12019 Type II transport protein GspH CLM98_19325 PF08334 Type II secretion system (T2SS), protein G CLM98_19330 PF00482 Type II secretion system (T2SS), protein F CLM98_19340 PF00437 Type II/IV secretion system protein CLM98_19340 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CLM98_19345 PF00082 Subtilase family CLM98_19345 PF04151 Bacterial pre-peptidase C-terminal domain CLM98_19350 PF05658 Head domain of trimeric autotransporter adhesin CLM98_19350 PF05662 Coiled stalk of trimeric autotransporter adhesin CLM98_19350 PF13018 CLM98_19350 CLM98_19355 PF00082 Subtilase family CLM98_19355 PF04151 Bacterial pre-peptidase C-terminal domain CLM98_19360 PF03895 YadA-like C-terminal region CLM98_19360 PF05658 Head domain of trimeric autotransporter adhesin CLM98_19360 PF05662 Coiled stalk of trimeric autotransporter adhesin CLM98_19370 PF02769 AIR synthase related protein, C-terminal domain CLM98_19370 PF13507 CobB/CobQ-like glutamine amidotransferase domain CLM98_19385 PF10411 Disulfide bond isomerase protein N-terminus CLM98_19385 PF13098 Thioredoxin-like domain CLM98_19400 PF00589 Phage integrase family CLM98_19400 PF02899 Phage integrase, N-terminal SAM-like domain CLM98_19405 PF06271 CLM98_19405 CLM98_19415 PF03739 CLM98_19415 CLM98_19420 PF03739 CLM98_19420 CLM98_19425 PF00883 Cytosol aminopeptidase family, catalytic domain CLM98_19425 PF02789 Cytosol aminopeptidase family, N-terminal domain CLM98_19435 PF04364 DNA polymerase III chi subunit, HolC CLM98_19440 PF00133 tRNA synthetases class I (I, L, M and V) CLM98_19440 PF08264 Anticodon-binding domain of tRNA CLM98_19440 PF10458 Valyl tRNA synthetase tRNA binding arm CLM98_19445 PF00593 TonB dependent receptor CLM98_19445 PF07715 TonB-dependent Receptor Plug Domain CLM98_19450 PF01464 Transglycosylase SLT domain CLM98_19450 PF14718 Soluble lytic murein transglycosylase L domain CLM98_19455 PF00544 Pectate lyase CLM98_19460 PF00583 Acetyltransferase (GNAT) family CLM98_19470 PF01066 CDP-alcohol phosphatidyltransferase CLM98_19475 PF13511 CLM98_19475 CLM98_19480 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLM98_19480 PF03129 Anticodon binding domain CLM98_19480 PF04073 Aminoacyl-tRNA editing domain CLM98_19485 PF00816 H-NS histone family CLM98_19490 PF06738 CLM98_19490 CLM98_19490 PF12821 CLM98_19490 CLM98_19495 PF02405 CLM98_19495 CLM98_19500 PF00005 ABC transporter CLM98_19505 PF02470 CLM98_19505 CLM98_19510 PF03886 Protein of unknown function (DUF330) CLM98_19515 PF13532 2OG-Fe(II) oxygenase superfamily CLM98_19520 PF01946 Thi4 family CLM98_19520 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase CLM98_19525 PF05045 CLM98_19525 CLM98_19525 PF14307 CLM98_19525 CLM98_19530 PF01144 Coenzyme A transferase CLM98_19535 PF01144 Coenzyme A transferase CLM98_19540 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLM98_19540 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLM98_19540 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLM98_19540 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLM98_19545 PF00483 Nucleotidyl transferase CLM98_19545 PF01050 Mannose-6-phosphate isomerase CLM98_19555 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CLM98_19555 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CLM98_19555 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLM98_19560 PF04321 RmlD substrate binding domain CLM98_19565 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CLM98_19570 PF00483 Nucleotidyl transferase CLM98_19575 PF16363 CLM98_19575 CLM98_19580 PF01012 Electron transfer flavoprotein domain CLM98_19585 PF00766 Electron transfer flavoprotein FAD-binding domain CLM98_19585 PF01012 Electron transfer flavoprotein domain CLM98_19590 PF03706 CLM98_19590 CLM98_19595 PF01040 UbiA prenyltransferase family CLM98_19600 PF01565 FAD binding domain CLM98_19605 PF00106 short chain dehydrogenase CLM98_19615 PF01370 NAD dependent epimerase/dehydratase family CLM98_19620 PF01593 Flavin containing amine oxidoreductase CLM98_19625 PF04138 CLM98_19625 CLM98_19635 PF05721 Phytanoyl-CoA dioxygenase (PhyH) CLM98_19645 PF00535 Glycosyl transferase family 2 CLM98_19655 PF00005 ABC transporter CLM98_19655 PF14524 Wzt C-terminal domain CLM98_19660 PF01061 CLM98_19660 CLM98_19665 PF01053 Cys/Met metabolism PLP-dependent enzyme CLM98_19670 PF00291 Pyridoxal-phosphate dependent enzyme CLM98_19670 PF00571 CBS domain CLM98_19675 PF04325 Protein of unknown function (DUF465) CLM98_19685 PF14346 Domain of unknown function (DUF4398) CLM98_19690 PF00437 Type II/IV secretion system protein CLM98_19700 PF13410 Glutathione S-transferase, C-terminal domain CLM98_19700 PF13417 Glutathione S-transferase, N-terminal domain CLM98_19705 PF01557 Fumarylacetoacetate (FAA) hydrolase family CLM98_19715 PF00270 DEAD/DEAH box helicase CLM98_19715 PF00271 Helicase conserved C-terminal domain CLM98_19725 PF00593 TonB dependent receptor CLM98_19725 PF07715 TonB-dependent Receptor Plug Domain CLM98_19735 PF01242 6-pyruvoyl tetrahydropterin synthase CLM98_19740 PF09361 CLM98_19740 CLM98_19745 PF13500 AAA domain CLM98_19750 PF13185 GAF domain CLM98_19760 PF00756 Putative esterase CLM98_19765 PF00593 TonB dependent receptor CLM98_19765 PF07715 TonB-dependent Receptor Plug Domain CLM98_19770 PF13419 Haloacid dehalogenase-like hydrolase CLM98_19775 PF00817 impB/mucB/samB family CLM98_19775 PF11799 impB/mucB/samB family C-terminal domain CLM98_19780 PF07977 FabA-like domain CLM98_19785 PF00109 Beta-ketoacyl synthase, N-terminal domain CLM98_19785 PF02801 Beta-ketoacyl synthase, C-terminal domain CLM98_19795 PF01432 Peptidase family M3 CLM98_19800 PF00291 Pyridoxal-phosphate dependent enzyme CLM98_19810 PF00394 Multicopper oxidase CLM98_19810 PF07731 Multicopper oxidase CLM98_19810 PF07732 Multicopper oxidase CLM98_19815 PF05275 CLM98_19815 CLM98_19820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLM98_19830 PF01471 Putative peptidoglycan binding domain CLM98_19850 PF01380 SIS domain CLM98_19850 PF13522 Glutamine amidotransferase domain CLM98_19855 PF13437 HlyD family secretion protein CLM98_19855 PF13533 Biotin-lipoyl like CLM98_19860 PF00005 ABC transporter CLM98_19865 PF02687 CLM98_19865 CLM98_19865 PF12704 MacB-like periplasmic core domain CLM98_19870 PF02687 CLM98_19870 CLM98_19870 PF12704 MacB-like periplasmic core domain CLM98_19885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_19890 PF00132 Bacterial transferase hexapeptide (six repeats) CLM98_19890 PF12804 MobA-like NTP transferase domain CLM98_19890 PF14602 Hexapeptide repeat of succinyl-transferase CLM98_19895 PF04138 CLM98_19895 CLM98_19900 PF01817 Chorismate mutase type II CLM98_19905 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CLM98_19905 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CLM98_19910 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLM98_19910 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLM98_19915 PF00231 ATP synthase CLM98_19920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLM98_19920 PF00306 ATP synthase alpha/beta chain, C terminal domain CLM98_19920 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLM98_19925 PF00213 ATP synthase delta (OSCP) subunit CLM98_19930 PF00430 ATP synthase B/B' CF(0) CLM98_19935 PF00137 ATP synthase subunit C CLM98_19940 PF00119 ATP synthase A chain CLM98_19960 PF00364 Biotin-requiring enzyme CLM98_19960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLM98_19960 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM98_19970 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CLM98_19970 PF00364 Biotin-requiring enzyme CLM98_19970 PF02817 e3 binding domain CLM98_19975 PF11101 CLM98_19975 CLM98_19980 PF03167 Uracil DNA glycosylase superfamily CLM98_19985 PF03922 OmpW family CLM98_20005 PF03180 NLPA lipoprotein CLM98_20010 PF00528 Binding-protein-dependent transport system inner membrane component CLM98_20015 PF00005 ABC transporter CLM98_20015 PF09383 NIL domain CLM98_20020 PF00892 EamA-like transporter family CLM98_20025 PF04461 Protein of unknown function (DUF520) CLM98_20035 PF00072 Response regulator receiver domain CLM98_20035 PF00512 His Kinase A (phospho-acceptor) domain CLM98_20035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_20040 PF12146 Putative lysophospholipase CLM98_20045 PF07209 CLM98_20045 CLM98_20050 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_20055 PF13419 Haloacid dehalogenase-like hydrolase CLM98_20060 PF00849 RNA pseudouridylate synthase CLM98_20065 PF05175 Methyltransferase small domain CLM98_20075 PF07995 Glucose / Sorbosone dehydrogenase CLM98_20080 PF11607 Protein of unknown function (DUF3247) CLM98_20085 PF00072 Response regulator receiver domain CLM98_20085 PF00512 His Kinase A (phospho-acceptor) domain CLM98_20085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_20085 PF08448 PAS fold CLM98_20085 PF13426 PAS domain CLM98_20100 PF11454 CLM98_20100 CLM98_20105 PF00842 Alanine racemase, C-terminal domain CLM98_20105 PF01168 Alanine racemase, N-terminal domain CLM98_20110 PF01266 FAD dependent oxidoreductase CLM98_20115 PF01037 AsnC family CLM98_20115 PF13404 AsnC-type helix-turn-helix domain CLM98_20125 PF01641 SelR domain CLM98_20130 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CLM98_20135 PF01618 CLM98_20135 CLM98_20140 PF00691 OmpA family CLM98_20140 PF13677 CLM98_20140 CLM98_20150 PF13223 CLM98_20150 CLM98_20160 PF11730 CLM98_20160 CLM98_20170 PF01061 CLM98_20170 CLM98_20175 PF00005 ABC transporter CLM98_20180 PF00999 Sodium/hydrogen exchanger family CLM98_20190 PF02469 Fasciclin domain CLM98_20195 PF03167 Uracil DNA glycosylase superfamily CLM98_20195 PF13566 CLM98_20195 CLM98_20200 PF04055 Radical SAM superfamily CLM98_20205 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CLM98_20210 PF07681 CLM98_20210 CLM98_20215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_20215 PF03466 LysR substrate binding domain CLM98_20220 PF03358 NADPH-dependent FMN reductase CLM98_20225 PF00248 Aldo/keto reductase family CLM98_20235 PF00535 Glycosyl transferase family 2 CLM98_20245 PF09995 CLM98_20245 CLM98_20260 PF13520 Amino acid permease CLM98_20270 PF00072 Response regulator receiver domain CLM98_20270 PF04397 LytTr DNA-binding domain CLM98_20275 PF06580 CLM98_20275 CLM98_20280 PF01266 FAD dependent oxidoreductase CLM98_20300 PF05974 Domain of unknown function (DUF892) CLM98_20305 PF05067 Manganese containing catalase CLM98_20325 PF01339 CheB methylesterase CLM98_20325 PF01739 CheR methyltransferase, SAM binding domain CLM98_20325 PF03705 CheR methyltransferase, all-alpha domain CLM98_20325 PF07536 CLM98_20325 CLM98_20325 PF08447 PAS fold CLM98_20325 PF13596 PAS domain CLM98_20330 PF00072 Response regulator receiver domain CLM98_20340 PF00072 Response regulator receiver domain CLM98_20340 PF00158 Sigma-54 interaction domain CLM98_20340 PF02954 Bacterial regulatory protein, Fis family CLM98_20355 PF01654 CLM98_20355 CLM98_20360 PF02322 CLM98_20360 CLM98_20375 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_20380 PF16363 CLM98_20380 CLM98_20385 PF13692 Glycosyl transferases group 1 CLM98_20390 PF03275 UDP-galactopyranose mutase CLM98_20390 PF13450 NAD(P)-binding Rossmann-like domain CLM98_20400 PF00005 ABC transporter CLM98_20400 PF00664 ABC transporter transmembrane region CLM98_20405 PF12244 CLM98_20405 CLM98_20410 PF13628 CLM98_20410 CLM98_20415 PF00107 Zinc-binding dehydrogenase CLM98_20415 PF08240 Alcohol dehydrogenase GroES-like domain CLM98_20415 PF13823 Alcohol dehydrogenase GroES-associated CLM98_20425 PF03692 CLM98_20425 CLM98_20440 PF11828 CLM98_20440 CLM98_20455 PF11445 CLM98_20455 CLM98_20460 PF00593 TonB dependent receptor CLM98_20460 PF07715 TonB-dependent Receptor Plug Domain CLM98_20465 PF12040 CLM98_20465 CLM98_20470 PF12040 CLM98_20470 CLM98_20470 PF12679 CLM98_20470 CLM98_20475 PF00005 ABC transporter CLM98_20480 PF00246 Zinc carboxypeptidase CLM98_20485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_20485 PF03466 LysR substrate binding domain CLM98_20490 PF01042 Endoribonuclease L-PSP CLM98_20510 PF12849 PBP superfamily domain CLM98_20515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLM98_20515 PF00672 HAMP domain CLM98_20520 PF01223 DNA/RNA non-specific endonuclease CLM98_20525 PF12697 Alpha/beta hydrolase family CLM98_20535 PF02525 Flavodoxin-like fold CLM98_20540 PF03795 YCII-related domain CLM98_20550 PF07866 Protein of unknown function (DUF1653) CLM98_20580 PF00557 Metallopeptidase family M24 CLM98_20585 PF11903 CLM98_20585 CLM98_20610 PF00140 Sigma-70 factor, region 1 CLM98_20610 PF03979 Sigma-70 factor, region 1 CLM98_20610 PF04539 Sigma-70 region 3 CLM98_20610 PF04542 Sigma-70 region 2 CLM98_20610 PF04545 Sigma-70, region 4 CLM98_20610 PF04546 Sigma-70, non-essential region CLM98_20615 PF02580 D-Tyr-tRNA(Tyr) deacylase CLM98_20620 PF03279 CLM98_20620 CLM98_20630 PF13420 Acetyltransferase (GNAT) domain CLM98_20640 PF00925 GTP cyclohydrolase II CLM98_20645 PF03703 CLM98_20645 CLM98_20650 PF03703 CLM98_20650 CLM98_20655 PF02350 UDP-N-acetylglucosamine 2-epimerase CLM98_20660 PF00535 Glycosyl transferase family 2 CLM98_20665 PF04932 CLM98_20665 CLM98_20670 PF13231 CLM98_20670 CLM98_20675 PF01029 NusB family CLM98_20675 PF01189 NOL1/NOP2/sun family CLM98_20680 PF00551 Formyl transferase CLM98_20680 PF02911 Formyl transferase, C-terminal domain CLM98_20685 PF01327 Polypeptide deformylase CLM98_20690 PF01476 LysM domain CLM98_20695 PF02481 DNA recombination-mediator protein A CLM98_20700 PF04361 CLM98_20700 CLM98_20705 PF00114 Pilin (bacterial filament) CLM98_20705 PF14237 CLM98_20705 CLM98_20710 PF06271 CLM98_20710 CLM98_20710 PF14237 CLM98_20710 CLM98_20715 PF01131 DNA topoisomerase CLM98_20715 PF01751 Toprim domain CLM98_20715 PF13368 CLM98_20715 CLM98_20720 PF01300 Telomere recombination CLM98_20735 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_20745 PF01343 Peptidase family S49 CLM98_20750 PF01554 MatE CLM98_20755 PF12412 CLM98_20755 CLM98_20760 PF11304 CLM98_20760 CLM98_20770 PF00270 DEAD/DEAH box helicase CLM98_20770 PF00271 Helicase conserved C-terminal domain CLM98_20775 PF00043 Glutathione S-transferase, C-terminal domain CLM98_20775 PF13417 Glutathione S-transferase, N-terminal domain CLM98_20780 PF01936 NYN domain CLM98_20780 PF12872 OST-HTH/LOTUS domain CLM98_20790 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLM98_20795 PF03458 CLM98_20795 CLM98_20800 PF00140 Sigma-70 factor, region 1 CLM98_20800 PF04542 Sigma-70 region 2 CLM98_20800 PF04545 Sigma-70, region 4 CLM98_20805 PF03167 Uracil DNA glycosylase superfamily CLM98_20810 PF00072 Response regulator receiver domain CLM98_20820 PF00005 ABC transporter CLM98_20825 PF00270 DEAD/DEAH box helicase CLM98_20825 PF00271 Helicase conserved C-terminal domain CLM98_20825 PF12300 CLM98_20825 CLM98_20830 PF00085 Thioredoxin CLM98_20835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLM98_20835 PF07497 Rho termination factor, RNA-binding domain CLM98_20835 PF07498 Rho termination factor, N-terminal domain CLM98_20850 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CLM98_20855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_20855 PF03466 LysR substrate binding domain CLM98_20865 PF03971 Monomeric isocitrate dehydrogenase CLM98_20875 PF00270 DEAD/DEAH box helicase CLM98_20880 PF09704 CRISPR-associated protein (Cas_Cas5) CLM98_20890 PF05107 CLM98_20890 CLM98_20895 PF01930 Domain of unknown function DUF83 CLM98_20900 PF01867 CRISPR associated protein Cas1 CLM98_20905 PF09827 CRISPR associated protein Cas2 CLM98_20915 PF01476 LysM domain CLM98_20920 PF14489 QueF-like protein CLM98_20920 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CLM98_20925 PF01546 Peptidase family M20/M25/M40 CLM98_20925 PF07687 Peptidase dimerisation domain CLM98_20930 PF16576 CLM98_20930 CLM98_20935 PF00873 AcrB/AcrD/AcrF family CLM98_20940 PF00873 AcrB/AcrD/AcrF family CLM98_20945 PF07063 Domain of unknown function (DUF1338) CLM98_20965 PF13419 Haloacid dehalogenase-like hydrolase CLM98_20970 PF13202 EF hand CLM98_20980 PF13202 EF hand CLM98_20990 PF14255 CLM98_20990 CLM98_20995 PF01427 D-ala-D-ala dipeptidase CLM98_21000 PF01510 N-acetylmuramoyl-L-alanine amidase CLM98_21005 PF00877 NlpC/P60 family CLM98_21005 PF12913 SH3 domain of the SH3b1 type CLM98_21005 PF12914 SH3 domain of SH3b2 type CLM98_21010 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CLM98_21010 PF13378 Enolase C-terminal domain-like CLM98_21020 PF13520 Amino acid permease CLM98_21035 PF05360 CLM98_21035 CLM98_21040 PF07995 Glucose / Sorbosone dehydrogenase CLM98_21045 PF00933 Glycosyl hydrolase family 3 N terminal domain CLM98_21045 PF01915 Glycosyl hydrolase family 3 C-terminal domain CLM98_21045 PF14310 Fibronectin type III-like domain CLM98_21050 PF02152 Dihydroneopterin aldolase CLM98_21055 PF00814 Glycoprotease family CLM98_21060 PF01165 Ribosomal protein S21 CLM98_21065 PF09424 Yqey-like protein CLM98_21075 PF03631 CLM98_21075 CLM98_21080 PF01807 CHC2 zinc finger CLM98_21080 PF08275 DNA primase catalytic core, N-terminal domain CLM98_21080 PF08278 DNA primase DnaG DnaB-binding CLM98_21080 PF10410 DnaB-helicase binding domain of primase CLM98_21080 PF13155 Toprim-like CLM98_21085 PF13593 SBF-like CPA transporter family (DUF4137) CLM98_21090 PF13899 Thioredoxin-like CLM98_21095 PF01040 UbiA prenyltransferase family CLM98_21100 PF02628 CLM98_21100 CLM98_21110 PF02104 CLM98_21110 CLM98_21115 PF11137 CLM98_21115 CLM98_21120 PF00510 Cytochrome c oxidase subunit III CLM98_21125 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CLM98_21135 PF00115 Cytochrome C and Quinol oxidase polypeptide I CLM98_21140 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CLM98_21140 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CLM98_21145 PF10003 CLM98_21145 CLM98_21150 PF00171 Aldehyde dehydrogenase family CLM98_21150 PF01619 Proline dehydrogenase CLM98_21150 PF14850 DNA-binding domain of Proline dehydrogenase CLM98_21185 PF00579 tRNA synthetases class I (W and Y) CLM98_21190 PF01551 Peptidase family M23 CLM98_21190 PF04225 Opacity-associated protein A LysM-like domain CLM98_21195 PF03702 Uncharacterised protein family (UPF0075) CLM98_21205 PF07690 Major Facilitator Superfamily CLM98_21210 PF03372 Endonuclease/Exonuclease/phosphatase family CLM98_21215 PF00156 Phosphoribosyl transferase domain CLM98_21225 PF13614 AAA domain CLM98_21230 PF02195 ParB-like nuclease domain CLM98_21235 PF11731 CLM98_21235 CLM98_21245 PF01370 NAD dependent epimerase/dehydratase family CLM98_21250 PF00535 Glycosyl transferase family 2 CLM98_21255 PF07578 Lipid A Biosynthesis N-terminal domain CLM98_21265 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLM98_21265 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLM98_21265 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLM98_21265 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLM98_21270 PF00692 dUTPase CLM98_21275 PF02441 Flavoprotein CLM98_21275 PF04127 DNA / pantothenate metabolism flavoprotein CLM98_21280 PF04002 RadC-like JAB domain CLM98_21285 PF00750 tRNA synthetases class I (R) CLM98_21285 PF03485 Arginyl tRNA synthetase N terminal domain CLM98_21285 PF05746 DALR anticodon binding domain CLM98_21290 PF05036 Sporulation related domain CLM98_21300 PF00106 short chain dehydrogenase CLM98_21305 PF01757 CLM98_21305 CLM98_21310 PF03033 Glycosyltransferase family 28 N-terminal domain CLM98_21315 PF00501 AMP-binding enzyme CLM98_21315 PF00550 Phosphopantetheine attachment site CLM98_21315 PF00668 Condensation domain CLM98_21315 PF00975 Thioesterase domain CLM98_21315 PF13193 AMP-binding enzyme C-terminal domain CLM98_21320 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CLM98_21325 PF01564 Spermine/spermidine synthase CLM98_21325 PF17284 CLM98_21325 CLM98_21330 PF09851 CLM98_21330 CLM98_21330 PF14470 Bacterial PH domain CLM98_21340 PF01636 Phosphotransferase enzyme family CLM98_21345 PF02838 Glycosyl hydrolase family 20, domain 2 CLM98_21345 PF07555 beta-N-acetylglucosaminidase CLM98_21355 PF00543 Nitrogen regulatory protein P-II CLM98_21360 PF04380 CLM98_21360 CLM98_21365 PF01078 Magnesium chelatase, subunit ChlI CLM98_21365 PF13335 CLM98_21365 CLM98_21365 PF13541 Subunit ChlI of Mg-chelatase CLM98_21370 PF08212 Lipocalin-like domain CLM98_21380 PF00563 EAL domain CLM98_21380 PF12792 CLM98_21380 CLM98_21385 PF00487 CLM98_21385 CLM98_21390 PF00111 2Fe-2S iron-sulfur cluster binding domain CLM98_21390 PF00175 Oxidoreductase NAD-binding domain CLM98_21390 PF00970 Oxidoreductase FAD-binding domain CLM98_21395 PF00440 Bacterial regulatory proteins, tetR family CLM98_21415 PF01145 SPFH domain / Band 7 family CLM98_21420 PF01139 tRNA-splicing ligase RtcB CLM98_21430 PF00326 Prolyl oligopeptidase family CLM98_21435 PF11379 CLM98_21435 CLM98_21450 PF13628 CLM98_21450 CLM98_21455 PF01370 NAD dependent epimerase/dehydratase family CLM98_21455 PF08338 Domain of unknown function (DUF1731) CLM98_21460 PF00072 Response regulator receiver domain CLM98_21460 PF00486 Transcriptional regulatory protein, C terminal CLM98_21465 PF00512 His Kinase A (phospho-acceptor) domain CLM98_21465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_21480 PF11769 CLM98_21480 CLM98_21495 PF13180 PDZ domain CLM98_21495 PF13365 Trypsin-like peptidase domain CLM98_21515 PF01594 CLM98_21515 CLM98_21520 PF13419 Haloacid dehalogenase-like hydrolase CLM98_21525 PF00883 Cytosol aminopeptidase family, catalytic domain CLM98_21535 PF04542 Sigma-70 region 2 CLM98_21535 PF08281 Sigma-70, region 4 CLM98_21540 PF00199 Catalase CLM98_21545 PF01292 Prokaryotic cytochrome b561 CLM98_21550 PF06283 Trehalose utilisation CLM98_21555 PF00072 Response regulator receiver domain CLM98_21555 PF00196 Bacterial regulatory proteins, luxR family CLM98_21560 PF07730 Histidine kinase CLM98_21565 PF16576 CLM98_21565 CLM98_21570 PF00005 ABC transporter CLM98_21575 PF02687 CLM98_21575 CLM98_21575 PF12704 MacB-like periplasmic core domain CLM98_21580 PF02687 CLM98_21580 CLM98_21580 PF12704 MacB-like periplasmic core domain CLM98_21585 PF12697 Alpha/beta hydrolase family CLM98_21595 PF00892 EamA-like transporter family CLM98_21610 PF02225 PA domain CLM98_21610 PF04389 Peptidase family M28 CLM98_21615 PF00753 Metallo-beta-lactamase superfamily CLM98_21620 PF00579 tRNA synthetases class I (W and Y) CLM98_21625 PF05532 CsbD-like CLM98_21630 PF08085 CLM98_21630 CLM98_21635 PF08085 CLM98_21635 CLM98_21640 PF00491 Arginase family CLM98_21645 PF03259 Roadblock/LC7 domain CLM98_21670 PF02223 Thymidylate kinase CLM98_21680 PF05036 Sporulation related domain CLM98_21685 PF03309 Type III pantothenate kinase CLM98_21690 PF02237 Biotin protein ligase C terminal domain CLM98_21690 PF03099 Biotin/lipoate A/B protein ligase family CLM98_21690 PF08279 HTH domain CLM98_21705 PF06167 Glucose-regulated metallo-peptidase M90 CLM98_21710 PF07394 CLM98_21710 CLM98_21715 PF08811 CLM98_21715 CLM98_21720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_21725 PF00072 Response regulator receiver domain CLM98_21725 PF00486 Transcriptional regulatory protein, C terminal CLM98_21735 PF01207 Dihydrouridine synthase (Dus) CLM98_21750 PF12796 Ankyrin repeats (3 copies) CLM98_21765 PF13307 Helicase C-terminal domain CLM98_21780 PF01488 Shikimate / quinate 5-dehydrogenase CLM98_21780 PF08501 Shikimate dehydrogenase substrate binding domain CLM98_21785 PF07676 WD40-like Beta Propeller Repeat CLM98_21790 PF00175 Oxidoreductase NAD-binding domain CLM98_21790 PF00258 Flavodoxin CLM98_21790 PF03929 CLM98_21790 CLM98_21795 PF01223 DNA/RNA non-specific endonuclease CLM98_21800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_21800 PF03466 LysR substrate binding domain CLM98_21805 PF01370 NAD dependent epimerase/dehydratase family CLM98_21815 PF00490 Delta-aminolevulinic acid dehydratase CLM98_21830 PF05960 Bacterial protein of unknown function (DUF885) CLM98_21840 PF00326 Prolyl oligopeptidase family CLM98_21840 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CLM98_21845 PF00043 Glutathione S-transferase, C-terminal domain CLM98_21845 PF02798 Glutathione S-transferase, N-terminal domain CLM98_21855 PF00593 TonB dependent receptor CLM98_21855 PF07715 TonB-dependent Receptor Plug Domain CLM98_21860 PF07277 CLM98_21860 CLM98_21865 PF13621 Cupin-like domain CLM98_21870 PF04820 Tryptophan halogenase CLM98_21875 PF03544 Gram-negative bacterial TonB protein C-terminal CLM98_21880 PF12679 CLM98_21880 CLM98_21885 PF00005 ABC transporter CLM98_21890 PF00561 alpha/beta hydrolase fold CLM98_21890 PF08386 TAP-like protein CLM98_21895 PF01381 Helix-turn-helix CLM98_21905 PF01229 Glycosyl hydrolases family 39 CLM98_21910 PF02583 Metal-sensitive transcriptional repressor CLM98_21915 PF01545 Cation efflux family CLM98_21920 PF03929 CLM98_21920 CLM98_21925 PF00593 TonB dependent receptor CLM98_21925 PF07715 TonB-dependent Receptor Plug Domain CLM98_21930 PF11287 CLM98_21930 CLM98_21935 PF01965 DJ-1/PfpI family CLM98_21935 PF12833 Helix-turn-helix domain CLM98_21940 PF00175 Oxidoreductase NAD-binding domain CLM98_21940 PF00970 Oxidoreductase FAD-binding domain CLM98_21945 PF00005 ABC transporter CLM98_21950 PF01061 CLM98_21950 CLM98_21960 PF02558 Ketopantoate reductase PanE/ApbA CLM98_21960 PF08546 Ketopantoate reductase PanE/ApbA C terminal CLM98_21975 PF03061 Thioesterase superfamily CLM98_21985 PF00085 Thioredoxin CLM98_21990 PF00258 Flavodoxin CLM98_21995 PF00268 Ribonucleotide reductase, small chain CLM98_22005 PF00317 Ribonucleotide reductase, all-alpha domain CLM98_22005 PF02867 Ribonucleotide reductase, barrel domain CLM98_22020 PF04332 CLM98_22020 CLM98_22025 PF13302 Acetyltransferase (GNAT) domain CLM98_22025 PF13380 CoA binding domain CLM98_22025 PF13549 ATP-grasp domain CLM98_22025 PF13607 Succinyl-CoA ligase like flavodoxin domain CLM98_22030 PF00571 CBS domain CLM98_22030 PF01769 Divalent cation transporter CLM98_22030 PF03448 MgtE intracellular N domain CLM98_22045 PF00999 Sodium/hydrogen exchanger family CLM98_22045 PF02254 TrkA-N domain CLM98_22050 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CLM98_22050 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CLM98_22055 PF00723 Glycosyl hydrolases family 15 CLM98_22065 PF00023 Ankyrin repeat CLM98_22065 PF12796 Ankyrin repeats (3 copies) CLM98_22070 PF05166 YcgL domain CLM98_22075 PF00109 Beta-ketoacyl synthase, N-terminal domain CLM98_22075 PF02801 Beta-ketoacyl synthase, C-terminal domain CLM98_22080 PF13723 CLM98_22080 CLM98_22085 PF00535 Glycosyl transferase family 2 CLM98_22090 PF04820 Tryptophan halogenase CLM98_22090 PF13450 NAD(P)-binding Rossmann-like domain CLM98_22105 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_22120 PF03176 MMPL family CLM98_22135 PF03279 CLM98_22135 CLM98_22140 PF07977 FabA-like domain CLM98_22145 PF01553 Acyltransferase CLM98_22155 PF00550 Phosphopantetheine attachment site CLM98_22160 PF04820 Tryptophan halogenase CLM98_22175 PF00501 AMP-binding enzyme CLM98_22185 PF00326 Prolyl oligopeptidase family CLM98_22185 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CLM98_22205 PF01218 Coproporphyrinogen III oxidase CLM98_22215 PF00476 DNA polymerase family A CLM98_22215 PF01367 5'-3' exonuclease, C-terminal SAM fold CLM98_22215 PF01612 3'-5' exonuclease CLM98_22215 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CLM98_22225 PF06812 CLM98_22225 CLM98_22230 PF05860 haemagglutination activity domain CLM98_22235 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CLM98_22235 PF08479 POTRA domain, ShlB-type CLM98_22245 PF00069 Protein kinase domain CLM98_22245 PF03781 Sulfatase-modifying factor enzyme 1 CLM98_22250 PF13672 Protein phosphatase 2C CLM98_22255 PF09867 Uncharacterized protein conserved in bacteria (DUF2094) CLM98_22260 PF06744 CLM98_22260 CLM98_22260 PF06761 CLM98_22260 CLM98_22260 PF14331 CLM98_22260 CLM98_22265 PF00691 OmpA family CLM98_22265 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) CLM98_22270 PF05936 CLM98_22270 CLM98_22275 PF00498 FHA domain CLM98_22285 PF05954 Phage late control gene D protein (GPD) CLM98_22290 PF00515 Tetratricopeptide repeat CLM98_22290 PF13489 Methyltransferase domain CLM98_22295 PF05488 PAAR motif CLM98_22300 PF00069 Protein kinase domain CLM98_22300 PF13374 Tetratricopeptide repeat CLM98_22300 PF13424 Tetratricopeptide repeat CLM98_22305 PF07638 ECF sigma factor CLM98_22310 PF04542 Sigma-70 region 2 CLM98_22310 PF08281 Sigma-70, region 4 CLM98_22315 PF04773 FecR protein CLM98_22315 PF16220 CLM98_22315 CLM98_22315 PF16344 CLM98_22315 CLM98_22325 PF00593 TonB dependent receptor CLM98_22325 PF07715 TonB-dependent Receptor Plug Domain CLM98_22330 PF00328 Histidine phosphatase superfamily (branch 2) CLM98_22335 PF01419 Jacalin-like lectin domain CLM98_22365 PF00004 ATPase family associated with various cellular activities (AAA) CLM98_22365 PF07724 AAA domain (Cdc48 subfamily) CLM98_22365 PF10431 C-terminal, D2-small domain, of ClpB protein CLM98_22370 PF06996 CLM98_22370 CLM98_22375 PF05947 CLM98_22375 CLM98_22380 PF04965 Gene 25-like lysozyme CLM98_22385 PF07024 ImpE protein CLM98_22390 PF05638 Protein of unknown function (DUF796) CLM98_22395 PF05943 CLM98_22395 CLM98_22400 PF05591 CLM98_22400 CLM98_22405 PF12833 Helix-turn-helix domain CLM98_22410 PF00582 Universal stress protein family CLM98_22415 PF00132 Bacterial transferase hexapeptide (six repeats) CLM98_22415 PF12464 Maltose acetyltransferase CLM98_22420 PF00580 UvrD/REP helicase N-terminal domain CLM98_22420 PF13361 UvrD-like helicase C-terminal domain CLM98_22425 PF13454 FAD-NAD(P)-binding CLM98_22435 PF13091 PLD-like domain CLM98_22435 PF13396 CLM98_22435 CLM98_22440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLM98_22440 PF03466 LysR substrate binding domain CLM98_22445 PF03737 Demethylmenaquinone methyltransferase CLM98_22450 PF04303 PrpF protein CLM98_22460 PF04909 Amidohydrolase CLM98_22465 PF00471 Ribosomal protein L33 CLM98_22470 PF00830 Ribosomal L28 family CLM98_22475 PF00873 AcrB/AcrD/AcrF family CLM98_22480 PF16576 CLM98_22480 CLM98_22485 PF02321 Outer membrane efflux protein CLM98_22495 PF05960 Bacterial protein of unknown function (DUF885) CLM98_22500 PF02527 rRNA small subunit methyltransferase G CLM98_22505 PF09423 PhoD-like phosphatase CLM98_22505 PF16655 CLM98_22505 CLM98_22510 PF09423 PhoD-like phosphatase CLM98_22510 PF16655 CLM98_22510 CLM98_22515 PF01648 4'-phosphopantetheinyl transferase superfamily CLM98_22520 PF04226 CLM98_22520 CLM98_22525 PF04828 Glutathione-dependent formaldehyde-activating enzyme CLM98_22530 PF03372 Endonuclease/Exonuclease/phosphatase family CLM98_22535 PF00480 ROK family CLM98_22545 PF13616 PPIC-type PPIASE domain CLM98_22550 PF03009 Glycerophosphoryl diester phosphodiesterase family CLM98_22555 PF00474 Sodium:solute symporter family CLM98_22560 PF04341 CLM98_22560 CLM98_22570 PF00501 AMP-binding enzyme CLM98_22570 PF13193 AMP-binding enzyme C-terminal domain CLM98_22570 PF16177 CLM98_22570 CLM98_22575 PF00072 Response regulator receiver domain CLM98_22575 PF00196 Bacterial regulatory proteins, luxR family CLM98_22580 PF14415 Domain of unknown function (DUF4424) CLM98_22590 PF00578 AhpC/TSA family CLM98_22600 PF04616 Glycosyl hydrolases family 43 CLM98_22610 PF00248 Aldo/keto reductase family CLM98_22615 PF04909 Amidohydrolase CLM98_22620 PF13561 Enoyl-(Acyl carrier protein) reductase CLM98_22625 PF01557 Fumarylacetoacetate (FAA) hydrolase family CLM98_22635 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CLM98_22635 PF13378 Enolase C-terminal domain-like CLM98_22645 PF05336 Domain of unknown function (DUF718) CLM98_22650 PF07690 Major Facilitator Superfamily CLM98_22655 PF01614 Bacterial transcriptional regulator CLM98_22655 PF09339 IclR helix-turn-helix domain CLM98_22660 PF02659 CLM98_22660 CLM98_22665 PF00072 Response regulator receiver domain CLM98_22665 PF00512 His Kinase A (phospho-acceptor) domain CLM98_22665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_22665 PF12860 CLM98_22665 CLM98_22675 PF15979 CLM98_22675 CLM98_22680 PF06165 Glycosyltransferase family 36 CLM98_22680 PF17167 CLM98_22680 CLM98_22685 PF13347 MFS/sugar transport protein CLM98_22690 PF13671 AAA domain CLM98_22700 PF13360 PQQ-like domain CLM98_22720 PF04357 CLM98_22720 CLM98_22725 PF01103 Surface antigen CLM98_22725 PF07244 Surface antigen variable number repeat CLM98_22725 PF17243 CLM98_22725 CLM98_22750 PF02092 CLM98_22750 CLM98_22750 PF05746 DALR anticodon binding domain CLM98_22755 PF02091 Glycyl-tRNA synthetase alpha subunit CLM98_22760 PF00437 Type II/IV secretion system protein CLM98_22760 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CLM98_22775 PF00117 Glutamine amidotransferase class-I CLM98_22785 PF00902 Sec-independent protein translocase protein (TatC) CLM98_22790 PF02416 mttA/Hcf106 family CLM98_22795 PF02416 mttA/Hcf106 family CLM98_22800 PF04366 CLM98_22800 CLM98_22805 PF00762 Ferrochelatase CLM98_22810 PF00561 alpha/beta hydrolase fold CLM98_22820 PF01863 Protein of unknown function DUF45 CLM98_22830 PF04381 Putative exonuclease, RdgC CLM98_22835 PF01171 PP-loop family CLM98_22850 PF00356 Bacterial regulatory proteins, lacI family CLM98_22850 PF13377 Periplasmic binding protein-like domain CLM98_22855 PF03648 Glycosyl hydrolase family 67 N-terminus CLM98_22855 PF07477 Glycosyl hydrolase family 67 C-terminus CLM98_22855 PF07488 Glycosyl hydrolase family 67 middle domain CLM98_22860 PF02837 Glycosyl hydrolases family 2, sugar binding domain CLM98_22860 PF03629 Domain of unknown function (DUF303) CLM98_22865 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CLM98_22865 PF13378 Enolase C-terminal domain-like CLM98_22870 PF04616 Glycosyl hydrolases family 43 CLM98_22875 PF00933 Glycosyl hydrolase family 3 N terminal domain CLM98_22875 PF01915 Glycosyl hydrolase family 3 C-terminal domain CLM98_22875 PF07691 PA14 domain CLM98_22875 PF14310 Fibronectin type III-like domain CLM98_22880 PF01232 Mannitol dehydrogenase Rossmann domain CLM98_22880 PF08125 Mannitol dehydrogenase C-terminal domain CLM98_22890 PF10013 CLM98_22890 CLM98_22905 PF01344 Kelch motif CLM98_22905 PF13964 Kelch motif CLM98_22910 PF00440 Bacterial regulatory proteins, tetR family CLM98_22915 PF00171 Aldehyde dehydrogenase family CLM98_22935 PF00596 Class II Aldolase and Adducin N-terminal domain CLM98_22940 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLM98_22940 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLM98_22945 PF09694 CLM98_22945 CLM98_22950 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) CLM98_22960 PF08450 SMP-30/Gluconolaconase/LRE-like region CLM98_22965 PF00331 Glycosyl hydrolase family 10 CLM98_22970 PF00703 Glycosyl hydrolases family 2 CLM98_22970 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CLM98_22970 PF02837 Glycosyl hydrolases family 2, sugar binding domain CLM98_22970 PF16355 CLM98_22970 CLM98_22975 PF02614 Glucuronate isomerase CLM98_22990 PF00331 Glycosyl hydrolase family 10 CLM98_22995 PF07690 Major Facilitator Superfamily CLM98_23000 PF00593 TonB dependent receptor CLM98_23000 PF07715 TonB-dependent Receptor Plug Domain CLM98_23005 PF13347 MFS/sugar transport protein CLM98_23010 PF04616 Glycosyl hydrolases family 43 CLM98_23015 PF08212 Lipocalin-like domain CLM98_23020 PF06877 Regulator of ribonuclease activity B CLM98_23050 PF03235 CLM98_23050 CLM98_23060 PF04325 Protein of unknown function (DUF465) CLM98_23065 PF00107 Zinc-binding dehydrogenase CLM98_23065 PF08240 Alcohol dehydrogenase GroES-like domain CLM98_23070 PF01553 Acyltransferase CLM98_23085 PF00356 Bacterial regulatory proteins, lacI family CLM98_23085 PF13377 Periplasmic binding protein-like domain CLM98_23090 PF00593 TonB dependent receptor CLM98_23090 PF13620 Carboxypeptidase regulatory-like domain CLM98_23095 PF00593 TonB dependent receptor CLM98_23100 PF04820 Tryptophan halogenase CLM98_23105 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CLM98_23110 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CLM98_23120 PF04337 Protein of unknown function, DUF480 CLM98_23125 PF14094 CLM98_23125 CLM98_23130 PF13302 Acetyltransferase (GNAT) domain CLM98_23135 PF00580 UvrD/REP helicase N-terminal domain CLM98_23135 PF13361 UvrD-like helicase C-terminal domain CLM98_23140 PF00265 Thymidine kinase CLM98_23145 PF00512 His Kinase A (phospho-acceptor) domain CLM98_23145 PF01590 GAF domain CLM98_23150 PF04349 Periplasmic glucan biosynthesis protein, MdoG CLM98_23155 PF14315 CLM98_23155 CLM98_23160 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CLM98_23160 PF06827 Zinc finger found in FPG and IleRS CLM98_23160 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CLM98_23165 PF00589 Phage integrase family CLM98_23185 PF02452 PemK-like protein CLM98_23200 PF04471 Restriction endonuclease CLM98_23205 PF13245 Part of AAA domain CLM98_23205 PF13361 UvrD-like helicase C-terminal domain CLM98_23210 PF13175 AAA ATPase domain CLM98_23215 PF05866 Endodeoxyribonuclease RusA CLM98_23225 PF13304 AAA domain CLM98_23235 PF13280 CLM98_23235 CLM98_23245 PF00899 ThiF family CLM98_23245 PF14457 CLM98_23245 CLM98_23245 PF14464 Prokaryotic homologs of the JAB domain CLM98_23250 PF01381 Helix-turn-helix CLM98_23255 PF01507 Phosphoadenosine phosphosulfate reductase family CLM98_23275 PF02195 ParB-like nuclease domain CLM98_23285 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLM98_23300 PF06733 DEAD_2 CLM98_23300 PF13307 Helicase C-terminal domain CLM98_23320 PF00072 Response regulator receiver domain CLM98_23340 PF10411 Disulfide bond isomerase protein N-terminus CLM98_23340 PF13098 Thioredoxin-like domain CLM98_23345 PF03544 Gram-negative bacterial TonB protein C-terminal CLM98_23360 PF13223 CLM98_23360 CLM98_23365 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CLM98_23375 PF00216 Bacterial DNA-binding protein CLM98_23380 PF02272 DHHA1 domain CLM98_23395 PF04381 Putative exonuclease, RdgC CLM98_23400 PF00565 Staphylococcal nuclease homologue CLM98_23420 PF13180 PDZ domain CLM98_23435 PF00176 SNF2 family N-terminal domain CLM98_23435 PF00271 Helicase conserved C-terminal domain CLM98_23435 PF05175 Methyltransferase small domain CLM98_23450 PF00712 DNA polymerase III beta subunit, N-terminal domain CLM98_23450 PF02767 DNA polymerase III beta subunit, central domain CLM98_23450 PF02768 DNA polymerase III beta subunit, C-terminal domain CLM98_23455 PF02195 ParB-like nuclease domain CLM98_23465 PF14454 CLM98_23465 CLM98_23475 PF14460 CLM98_23475 CLM98_23480 PF09436 CLM98_23480 CLM98_23480 PF14464 Prokaryotic homologs of the JAB domain CLM98_23485 PF00899 ThiF family CLM98_23490 PF00436 Single-strand binding protein family CLM98_23495 PF00589 Phage integrase family CLM98_23500 PF00589 Phage integrase family CLM98_23515 PF02384 N-6 DNA Methylase CLM98_23515 PF12161 HsdM N-terminal domain CLM98_23525 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CLM98_23525 PF04851 Type III restriction enzyme, res subunit CLM98_23550 PF00271 Helicase conserved C-terminal domain CLM98_23550 PF04851 Type III restriction enzyme, res subunit CLM98_23555 PF08238 Sel1 repeat CLM98_23560 PF07514 Putative helicase CLM98_23565 PF10412 Type IV secretion-system coupling protein DNA-binding domain CLM98_23565 PF12696 TraM recognition site of TraD and TraG CLM98_23570 PF14348 CLM98_23570 CLM98_23580 PF13245 Part of AAA domain CLM98_23580 PF13361 UvrD-like helicase C-terminal domain CLM98_23600 PF00436 Single-strand binding protein family CLM98_23610 PF12705 PD-(D/E)XK nuclease superfamily CLM98_23620 PF07728 AAA domain (dynein-related subfamily) CLM98_23630 PF11348 CLM98_23630 CLM98_23640 PF08273 Zinc-binding domain of primase-helicase CLM98_23640 PF13362 Toprim domain CLM98_23650 PF11412 Disulphide bond corrector protein DsbC CLM98_23655 PF00580 UvrD/REP helicase N-terminal domain CLM98_23655 PF13361 UvrD-like helicase C-terminal domain CLM98_23680 PF07791 CLM98_23680 CLM98_23725 PF16473 CLM98_23725 CLM98_23740 PF02321 Outer membrane efflux protein CLM98_23745 PF16576 CLM98_23745 CLM98_23750 PF00873 AcrB/AcrD/AcrF family CLM98_23755 PF10670 CLM98_23755 CLM98_23760 PF00593 TonB dependent receptor CLM98_23765 PF00491 Arginase family CLM98_23770 PF03713 Domain of unknown function (DUF305) CLM98_23775 PF13202 EF hand CLM98_23780 PF00122 E1-E2 ATPase CLM98_23780 PF00702 haloacid dehalogenase-like hydrolase CLM98_23785 PF05425 CLM98_23785 CLM98_23790 PF04234 CopC domain CLM98_23800 PF04214 CLM98_23800 CLM98_23805 PF13474 SnoaL-like domain CLM98_23810 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLM98_23815 PF05275 CLM98_23815 CLM98_23820 PF00394 Multicopper oxidase CLM98_23820 PF07731 Multicopper oxidase CLM98_23820 PF07732 Multicopper oxidase CLM98_23830 PF13560 Helix-turn-helix domain CLM98_23840 PF16473 CLM98_23840 CLM98_23850 PF02810 SEC-C motif CLM98_23855 PF02583 Metal-sensitive transcriptional repressor CLM98_23860 PF01545 Cation efflux family CLM98_23865 PF06945 CLM98_23865 CLM98_23875 PF13304 AAA domain CLM98_23875 PF13476 AAA domain CLM98_23880 PF13245 Part of AAA domain CLM98_23885 PF12840 Helix-turn-helix domain CLM98_23890 PF01451 Low molecular weight phosphotyrosine protein phosphatase CLM98_23895 PF03960 ArsC family CLM98_23900 PF03358 NADPH-dependent FMN reductase CLM98_23905 PF02040 CLM98_23905 CLM98_23915 PF00873 AcrB/AcrD/AcrF family CLM98_23920 PF16576 CLM98_23920 CLM98_23925 PF02321 Outer membrane efflux protein CLM98_23935 PF01545 Cation efflux family CLM98_23940 PF00376 MerR family regulatory protein CLM98_23940 PF09278 MerR, DNA binding CLM98_23945 PF00589 Phage integrase family CLM98_23950 PF01526 CLM98_23950 CLM98_23950 PF13700 CLM98_23950 CLM98_23955 PF13744 Helix-turn-helix domain CLM98_23960 PF05973 CLM98_23960 CLM98_23965 PF02195 ParB-like nuclease domain CLM98_23970 PF00717 Peptidase S24-like CLM98_23975 PF00817 impB/mucB/samB family CLM98_23975 PF11799 impB/mucB/samB family C-terminal domain CLM98_23975 PF13438 CLM98_23975 CLM98_23995 PF11740 CLM98_23995 CLM98_24085 PF00589 Phage integrase family CLM98_24105 PF05231 CLM98_24105 CLM98_24115 PF02371 CLM98_24115 CLM98_24120 PF12796 Ankyrin repeats (3 copies) CLM98_24140 PF03160 Calx-beta domain CLM98_24140 PF06986 CLM98_24140 CLM98_24150 PF06834 CLM98_24150 CLM98_24155 PF09673 CLM98_24155 CLM98_24160 PF10502 Signal peptidase, peptidase S26 CLM98_24170 PF11130 CLM98_24170 CLM98_24170 PF12846 AAA-like domain CLM98_24180 PF09676 CLM98_24180 CLM98_24185 PF03743 Bacterial conjugation TrbI-like protein CLM98_24190 PF06586 CLM98_24190 CLM98_24195 PF05309 CLM98_24195 CLM98_24200 PF07178 CLM98_24200 CLM98_24215 PF07916 CLM98_24215 CLM98_24220 PF06122 CLM98_24220 CLM98_24225 PF13728 F plasmid transfer operon protein CLM98_24245 PF02195 ParB-like nuclease domain CLM98_24250 PF13614 AAA domain CLM98_24255 PF07042 CLM98_24255 CLM98_24285 PF01343 Peptidase family S49 CLM98_24295 PF12705 PD-(D/E)XK nuclease superfamily CLM98_24310 PF14549 DNA-binding transcriptional regulator Cro CLM98_24380 PF13614 AAA domain CLM98_24385 PF02195 ParB-like nuclease domain CLM98_24385 PF08535 KorB domain CLM98_24390 PF16509 CLM98_24390 CLM98_24415 PF04956 CLM98_24415 CLM98_24420 PF05101 CLM98_24420 CLM98_24425 PF03135 CLM98_24425 CLM98_24430 PF07996 Type IV secretion system proteins CLM98_24445 PF04610 CLM98_24445 CLM98_24450 PF04335 VirB8 protein CLM98_24455 PF03524 Conjugal transfer protein CLM98_24460 PF03743 Bacterial conjugation TrbI-like protein CLM98_24465 PF00437 Type II/IV secretion system protein CLM98_24470 PF01464 Transglycosylase SLT domain CLM98_24485 PF11455 CLM98_24485 CLM98_24490 PF02452 PemK-like protein CLM98_24495 PF08751 TrwC relaxase CLM98_24495 PF13538 UvrD-like helicase C-terminal domain CLM98_24495 PF13604 AAA domain CLM98_24500 PF10412 Type IV secretion-system coupling protein DNA-binding domain CLM98_24555 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLM98_24570 PF03090 CLM98_24570 CLM98_24570 PF08708 Primase C terminal 1 (PriCT-1) CLM98_24575 PF03377 Xanthomonas avirulence protein, Avr/PthA CLM98_24590 PF07929 Plasmid pRiA4b ORF-3-like protein CLM98_24600 PF02452 PemK-like protein CLM98_24610 PF00239 Resolvase, N terminal domain CLM98_24625 PF02810 SEC-C motif CLM98_24625 PF03695 Uncharacterised protein family (UPF0149) CLM98_24630 PF01609 Transposase DDE domain CLM98_24645 PF13470 CLM98_24645 CLM98_24650 PF16762 CLM98_24650 CLM98_24655 PF00239 Resolvase, N terminal domain CLM98_24660 PF02796 Helix-turn-helix domain of resolvase CLM98_24685 PF01435 Peptidase family M48 CLM98_24700 PF01471 Putative peptidoglycan binding domain CLM98_24700 PF13406 Transglycosylase SLT domain CLM98_24705 PF01526 CLM98_24705 CLM98_24705 PF13700 CLM98_24705 CLM98_24710 PF00589 Phage integrase family CLM98_24715 PF11740 CLM98_24715 CLM98_24750 PF03377 Xanthomonas avirulence protein, Avr/PthA CLM98_24755 PF03090 CLM98_24755 CLM98_24755 PF08708 Primase C terminal 1 (PriCT-1) CLM98_24770 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLM98_24825 PF01850 PIN domain CLM98_24835 PF00239 Resolvase, N terminal domain CLM98_24855 PF11740 CLM98_24855 CLM98_24860 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLM98_24865 PF09274 ParG CLM98_24875 PF03377 Xanthomonas avirulence protein, Avr/PthA CLM98_24880 PF00239 Resolvase, N terminal domain CLM98_24885 PF16762 CLM98_24885 CLM98_24890 PF13470 CLM98_24890 CLM98_24900 PF02810 SEC-C motif CLM98_24900 PF03695 Uncharacterised protein family (UPF0149) CLM98_24910 PF03377 Xanthomonas avirulence protein, Avr/PthA CLM98_24955 PF06414 Zeta toxin