locus-tag class description J170_00012 PF07015 VirC1 protein J170_00016 PF03377 TAL effector repeat J170_00020 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system J170_00022 PF00239 Resolvase, N terminal domain J170_00022 PF02796 Helix-turn-helix domain of resolvase J170_00027 PF13700 Domain of unknown function (DUF4158) J170_00027 PF01526 Tn3 transposase DDE domain J170_00028 PF01526 Tn3 transposase DDE domain J170_00028 PF13700 Domain of unknown function (DUF4158) J170_00031 PF02796 Helix-turn-helix domain of resolvase J170_00031 PF00239 Resolvase, N terminal domain J170_00032 PF03377 TAL effector repeat J170_00040 PF13406 Transglycosylase SLT domain J170_00041 PF01526 Tn3 transposase DDE domain J170_00041 PF13700 Domain of unknown function (DUF4158) J170_00046 PF01527 Transposase J170_00047 PF03377 TAL effector repeat J170_00051 PF07015 VirC1 protein J170_00064 PF18272 single-stranded DNA binding TraI N-terminal subdomain J170_00064 PF07057 DNA helicase TraI J170_00064 PF18340 DNA relaxase TraI 2B/2B-like domain J170_00064 PF07057 DNA helicase TraI J170_00064 PF18272 single-stranded DNA binding TraI N-terminal subdomain J170_00064 PF08751 TrwC relaxase J170_00064 PF18340 DNA relaxase TraI 2B/2B-like domain J170_00064 PF08751 TrwC relaxase J170_00069 PF01464 Transglycosylase SLT domain J170_00070 PF00437 Type II/IV secretion system protein J170_00071 PF03743 Bacterial conjugation TrbI-like protein J170_00072 PF03524 Conjugal transfer protein J170_00084 PF01527 Transposase J170_00087 PF08535 KorB domain J170_00087 PF06613 KorB C-terminal beta-barrel domain J170_00087 PF02195 ParB-like nuclease domain J170_00088 PF13614 AAA domain J170_00093 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin J170_00094 PF00239 Resolvase, N terminal domain J170_00094 PF02796 Helix-turn-helix domain of resolvase J170_00095 PF13276 HTH-like domain J170_00095 PF00665 Integrase core domain J170_00095 PF13333 Integrase core domain J170_00097 PF03377 TAL effector repeat J170_00098 PF13700 Domain of unknown function (DUF4158) J170_00098 PF01526 Tn3 transposase DDE domain J170_00099 PF01526 Tn3 transposase DDE domain J170_00099 PF13700 Domain of unknown function (DUF4158) J170_00102 PF00239 Resolvase, N terminal domain J170_00102 PF02796 Helix-turn-helix domain of resolvase J170_00103 PF11638 DnaA N-terminal domain J170_00103 PF08299 Bacterial dnaA protein helix-turn-helix J170_00103 PF00308 Bacterial dnaA protein J170_00104 PF02768 DNA polymerase III beta subunit, C-terminal domain J170_00104 PF00712 DNA polymerase III beta subunit, N-terminal domain J170_00104 PF02767 DNA polymerase III beta subunit, central domain J170_00105 PF02463 RecF/RecN/SMC N terminal domain J170_00107 PF00986 DNA gyrase B subunit, carboxyl terminus J170_00107 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_00107 PF00204 DNA gyrase B J170_00107 PF01751 Toprim domain J170_00107 PF18053 DNA gyrase B subunit insert domain J170_00109 PF01435 Peptidase family M48 J170_00111 PF03544 Gram-negative bacterial TonB protein C-terminal J170_00112 PF01618 MotA/TolQ/ExbB proton channel family J170_00113 PF02472 Biopolymer transport protein ExbD/TolR J170_00114 PF02472 Biopolymer transport protein ExbD/TolR J170_00115 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ J170_00117 PF13396 Phospholipase_D-nuclease N-terminal J170_00117 PF13091 PLD-like domain J170_00120 PF04055 Radical SAM superfamily J170_00122 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J170_00125 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J170_00125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J170_00126 PF03572 Peptidase family S41 J170_00126 PF13180 PDZ domain J170_00127 PF01551 Peptidase family M23 J170_00129 PF04389 Peptidase family M28 J170_00131 PF00150 Cellulase (glycosyl hydrolase family 5) J170_00132 PF00150 Cellulase (glycosyl hydrolase family 5) J170_00133 PF00150 Cellulase (glycosyl hydrolase family 5) J170_00134 PF08240 Alcohol dehydrogenase GroES-like domain J170_00134 PF00107 Zinc-binding dehydrogenase J170_00135 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J170_00135 PF07992 Pyridine nucleotide-disulphide oxidoreductase J170_00136 PF04898 Glutamate synthase central domain J170_00136 PF01645 Conserved region in glutamate synthase J170_00136 PF01493 GXGXG motif J170_00136 PF00310 Glutamine amidotransferases class-II J170_00140 PF01804 Penicillin amidase J170_00142 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_00142 PF03466 LysR substrate binding domain J170_00145 PF02397 Bacterial sugar transferase J170_00146 PF02350 UDP-N-acetylglucosamine 2-epimerase J170_00148 PF03808 Glycosyl transferase WecB/TagA/CpsF family J170_00149 PF00534 Glycosyl transferases group 1 J170_00149 PF13439 Glycosyltransferase Family 4 J170_00153 PF13537 Glutamine amidotransferase domain J170_00153 PF00733 Asparagine synthase J170_00156 PF16363 GDP-mannose 4,6 dehydratase J170_00159 PF00005 ABC transporter J170_00159 PF00664 ABC transporter transmembrane region J170_00161 PF00733 Asparagine synthase J170_00161 PF13537 Glutamine amidotransferase domain J170_00166 PF00685 Sulfotransferase domain J170_00183 PF00271 Helicase conserved C-terminal domain J170_00183 PF09369 Domain of unknown function (DUF1998) J170_00183 PF00270 DEAD/DEAH box helicase J170_00184 PF03006 Haemolysin-III related J170_00187 PF00106 short chain dehydrogenase J170_00189 PF03466 LysR substrate binding domain J170_00189 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_00193 PF02525 Flavodoxin-like fold J170_00195 PF01527 Transposase J170_00204 PF05532 CsbD-like J170_00208 PF16485 Protealysin propeptide J170_00208 PF02868 Thermolysin metallopeptidase, alpha-helical domain J170_00208 PF01447 Thermolysin metallopeptidase, catalytic domain J170_00210 PF13344 Haloacid dehalogenase-like hydrolase J170_00210 PF00293 NUDIX domain J170_00213 PF00085 Thioredoxin J170_00214 PF00083 Sugar (and other) transporter J170_00214 PF08946 Osmosensory transporter coiled coil J170_00222 PF17863 AAA lid domain J170_00222 PF07726 ATPase family associated with various cellular activities (AAA) J170_00228 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain J170_00229 PF00155 Aminotransferase class I and II J170_00230 PF07715 TonB-dependent Receptor Plug Domain J170_00230 PF00593 TonB dependent receptor J170_00232 PF07883 Cupin domain J170_00233 PF00171 Aldehyde dehydrogenase family J170_00237 PF02735 Ku70/Ku80 beta-barrel domain J170_00238 PF01070 FMN-dependent dehydrogenase J170_00239 PF00144 Beta-lactamase J170_00240 PF07730 Histidine kinase J170_00241 PF00196 Bacterial regulatory proteins, luxR family J170_00241 PF00072 Response regulator receiver domain J170_00245 PF00486 Transcriptional regulatory protein, C terminal J170_00245 PF18500 CadC C-terminal domain 1 J170_00246 PF07055 Enoyl reductase FAD binding domain J170_00246 PF12241 Trans-2-enoyl-CoA reductase catalytic region J170_00246 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J170_00248 PF00294 pfkB family carbohydrate kinase J170_00259 PF01527 Transposase J170_00260 PF13276 HTH-like domain J170_00260 PF00665 Integrase core domain J170_00260 PF13333 Integrase core domain J170_00261 PF00128 Alpha amylase, catalytic domain J170_00261 PF11896 Domain of unknown function (DUF3416) J170_00262 PF00128 Alpha amylase, catalytic domain J170_00262 PF16657 Maltogenic Amylase, C-terminal domain J170_00263 PF00128 Alpha amylase, catalytic domain J170_00263 PF02806 Alpha amylase, C-terminal all-beta domain J170_00263 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J170_00265 PF00248 Aldo/keto reductase family J170_00266 PF00135 Carboxylesterase family J170_00267 PF13472 GDSL-like Lipase/Acylhydrolase family J170_00267 PF07859 alpha/beta hydrolase fold J170_00269 PF03480 Bacterial extracellular solute-binding protein, family 7 J170_00271 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J170_00272 PF04616 Glycosyl hydrolases family 43 J170_00272 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J170_00273 PF00356 Bacterial regulatory proteins, lacI family J170_00274 PF04962 KduI/IolB family J170_00277 PF00657 GDSL-like Lipase/Acylhydrolase J170_00280 PF00351 Biopterin-dependent aromatic amino acid hydroxylase J170_00281 PF01037 Lrp/AsnC ligand binding domain J170_00282 PF00593 TonB dependent receptor J170_00282 PF07660 Secretin and TonB N terminus short domain J170_00282 PF07715 TonB-dependent Receptor Plug Domain J170_00283 PF01734 Patatin-like phospholipase J170_00285 PF00005 ABC transporter J170_00288 PF00005 ABC transporter J170_00289 PF00528 Binding-protein-dependent transport system inner membrane component J170_00291 PF03781 Sulfatase-modifying factor enzyme 1 J170_00291 PF12867 DinB superfamily J170_00294 PF01381 Helix-turn-helix J170_00298 PF10609 NUBPL iron-transfer P-loop NTPase J170_00298 PF01883 Iron-sulfur cluster assembly protein J170_00301 PF13091 PLD-like domain J170_00302 PF03061 Thioesterase superfamily J170_00308 PF08240 Alcohol dehydrogenase GroES-like domain J170_00308 PF00107 Zinc-binding dehydrogenase J170_00310 PF02673 Bacitracin resistance protein BacA J170_00311 PF03951 Glutamine synthetase, beta-Grasp domain J170_00311 PF00120 Glutamine synthetase, catalytic domain J170_00312 PF00543 Nitrogen regulatory protein P-II J170_00313 PF00909 Ammonium Transporter Family J170_00314 PF00512 His Kinase A (phospho-acceptor) domain J170_00314 PF00989 PAS fold J170_00314 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_00315 PF00158 Sigma-54 interaction domain J170_00315 PF00072 Response regulator receiver domain J170_00315 PF02954 Bacterial regulatory protein, Fis family J170_00316 PF00080 Copper/zinc superoxide dismutase (SODC) J170_00317 PF00080 Copper/zinc superoxide dismutase (SODC) J170_00318 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J170_00320 PF02803 Thiolase, C-terminal domain J170_00320 PF00108 Thiolase, N-terminal domain J170_00327 PF00581 Rhodanese-like domain J170_00328 PF02556 Preprotein translocase subunit SecB J170_00329 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J170_00329 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J170_00331 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J170_00331 PF00205 Thiamine pyrophosphate enzyme, central domain J170_00331 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J170_00332 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_00333 PF00158 Sigma-54 interaction domain J170_00333 PF00072 Response regulator receiver domain J170_00333 PF02954 Bacterial regulatory protein, Fis family J170_00336 PF07690 Major Facilitator Superfamily J170_00337 PF00588 SpoU rRNA Methylase family J170_00340 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J170_00340 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J170_00341 PF02661 Fic/DOC family J170_00341 PF13784 Fic/DOC family N-terminal J170_00342 PF00561 alpha/beta hydrolase fold J170_00343 PF03692 Putative zinc- or iron-chelating domain J170_00344 PF00501 AMP-binding enzyme J170_00346 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family J170_00348 PF01820 D-ala D-ala ligase N-terminus J170_00348 PF07478 D-ala D-ala ligase C-terminus J170_00350 PF03109 ABC1 family J170_00352 PF00849 RNA pseudouridylate synthase J170_00354 PF00472 RF-1 domain J170_00356 PF01112 Asparaginase J170_00357 PF01432 Peptidase family M3 J170_00358 PF12706 Beta-lactamase superfamily domain J170_00361 PF12833 Helix-turn-helix domain J170_00362 PF00999 Sodium/hydrogen exchanger family J170_00363 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_00363 PF03466 LysR substrate binding domain J170_00364 PF01274 Malate synthase J170_00365 PF00463 Isocitrate lyase family J170_00366 PF00990 Diguanylate cyclase, GGDEF domain J170_00371 PF00326 Prolyl oligopeptidase family J170_00372 PF00289 Biotin carboxylase, N-terminal domain J170_00372 PF02785 Biotin carboxylase C-terminal domain J170_00372 PF00364 Biotin-requiring enzyme J170_00372 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J170_00373 PF01039 Carboxyl transferase domain J170_00374 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J170_00374 PF02770 Acyl-CoA dehydrogenase, middle domain J170_00374 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J170_00385 PF02492 CobW/HypB/UreG, nucleotide-binding domain J170_00385 PF07683 Cobalamin synthesis protein cobW C-terminal domain J170_00389 PF03969 AFG1-like ATPase J170_00390 PF01047 MarR family J170_00391 PF02566 OsmC-like protein J170_00396 PF16884 N-terminal domain of oxidoreductase J170_00396 PF00107 Zinc-binding dehydrogenase J170_00399 PF00849 RNA pseudouridylate synthase J170_00400 PF00593 TonB dependent receptor J170_00402 PF00270 DEAD/DEAH box helicase J170_00402 PF04408 Helicase associated domain (HA2) J170_00402 PF00271 Helicase conserved C-terminal domain J170_00402 PF08482 ATP-dependent helicase C-terminal J170_00403 PF07308 Protein of unknown function (DUF1456) J170_00404 PF00576 HIUase/Transthyretin family J170_00405 PF13454 FAD-NAD(P)-binding J170_00406 PF01014 Uricase J170_00406 PF09349 OHCU decarboxylase J170_00409 PF00266 Aminotransferase class-V J170_00410 PF01546 Peptidase family M20/M25/M40 J170_00410 PF07687 Peptidase dimerisation domain J170_00411 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_00411 PF03466 LysR substrate binding domain J170_00412 PF07690 Major Facilitator Superfamily J170_00415 PF01425 Amidase J170_00416 PF01156 Inosine-uridine preferring nucleoside hydrolase J170_00418 PF00860 Permease family J170_00419 PF00111 2Fe-2S iron-sulfur cluster binding domain J170_00420 PF00355 Rieske [2Fe-2S] domain J170_00421 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_00421 PF03466 LysR substrate binding domain J170_00422 PF01026 TatD related DNase J170_00425 PF03466 LysR substrate binding domain J170_00425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_00426 PF07690 Major Facilitator Superfamily J170_00429 PF02146 Sir2 family J170_00430 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J170_00431 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J170_00431 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J170_00433 PF00551 Formyl transferase J170_00434 PF00486 Transcriptional regulatory protein, C terminal J170_00434 PF00072 Response regulator receiver domain J170_00435 PF00672 HAMP domain J170_00435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_00435 PF00512 His Kinase A (phospho-acceptor) domain J170_00436 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J170_00436 PF00529 HlyD membrane-fusion protein of T1SS J170_00437 PF00873 AcrB/AcrD/AcrF family J170_00438 PF02321 Outer membrane efflux protein J170_00440 PF02219 Methylenetetrahydrofolate reductase J170_00441 PF02677 Epoxyqueuosine reductase QueH J170_00442 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_00442 PF03466 LysR substrate binding domain J170_00443 PF03358 NADPH-dependent FMN reductase J170_00445 PF01717 Cobalamin-independent synthase, Catalytic domain J170_00445 PF08267 Cobalamin-independent synthase, N-terminal domain J170_00446 PF03812 2-keto-3-deoxygluconate permease J170_00448 PF05368 NmrA-like family J170_00449 PF01638 HxlR-like helix-turn-helix J170_00453 PF13276 HTH-like domain J170_00453 PF13333 Integrase core domain J170_00453 PF00665 Integrase core domain J170_00454 PF01527 Transposase J170_00455 PF00589 Phage integrase family J170_00455 PF13495 Phage integrase, N-terminal SAM-like domain J170_00456 PF00920 Dehydratase family J170_00459 PF00132 Bacterial transferase hexapeptide (six repeats) J170_00460 PF07690 Major Facilitator Superfamily J170_00461 PF11871 Domain of unknown function (DUF3391) J170_00461 PF01966 HD domain J170_00465 PF00171 Aldehyde dehydrogenase family J170_00467 PF01494 FAD binding domain J170_00470 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J170_00470 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J170_00471 PF00230 Major intrinsic protein J170_00472 PF16901 C-terminal domain of alpha-glycerophosphate oxidase J170_00472 PF01266 FAD dependent oxidoreductase J170_00473 PF00455 DeoR C terminal sensor domain J170_00473 PF08220 DeoR-like helix-turn-helix domain J170_00475 PF00355 Rieske [2Fe-2S] domain J170_00476 PF01144 Coenzyme A transferase J170_00477 PF01144 Coenzyme A transferase J170_00478 PF00108 Thiolase, N-terminal domain J170_00478 PF02803 Thiolase, C-terminal domain J170_00479 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal J170_00479 PF00775 Dioxygenase J170_00481 PF00206 Lyase J170_00481 PF10397 Adenylosuccinate lyase C-terminus J170_00482 PF12146 Serine aminopeptidase, S33 J170_00483 PF02627 Carboxymuconolactone decarboxylase family J170_00485 PF09339 IclR helix-turn-helix domain J170_00485 PF01614 Bacterial transcriptional regulator J170_00487 PF07859 alpha/beta hydrolase fold J170_00488 PF10677 Protein of unknown function (DUF2490) J170_00489 PF01134 Glucose inhibited division protein A J170_00489 PF13932 GidA associated domain J170_00491 PF00291 Pyridoxal-phosphate dependent enzyme J170_00495 PF13649 Methyltransferase domain J170_00497 PF12697 Alpha/beta hydrolase family J170_00499 PF00155 Aminotransferase class I and II J170_00500 PF04055 Radical SAM superfamily J170_00500 PF06968 Biotin and Thiamin Synthesis associated domain J170_00502 PF01040 UbiA prenyltransferase family J170_00506 PF05819 NolX protein J170_00514 PF01313 Bacterial export proteins, family 3 J170_00515 PF00813 FliP family J170_00518 PF00771 FHIPEP family J170_00519 PF01312 FlhB HrpN YscU SpaS Family J170_00522 PF01514 Secretory protein of YscJ/FliF family J170_00525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J170_00525 PF02874 ATP synthase alpha/beta family, beta-barrel domain J170_00525 PF18269 T3SS EscN ATPase C-terminal domain J170_00527 PF01311 Bacterial export proteins, family 1 J170_00530 PF01464 Transglycosylase SLT domain J170_00533 PF00924 Mechanosensitive ion channel J170_00533 PF12794 Mechanosensitive ion channel inner membrane domain 1 J170_00533 PF12795 Mechanosensitive ion channel porin domain J170_00534 PF00884 Sulfatase J170_00535 PF03109 ABC1 family J170_00536 PF05661 Protein of unknown function (DUF808) J170_00537 PF00990 Diguanylate cyclase, GGDEF domain J170_00537 PF00072 Response regulator receiver domain J170_00538 PF00534 Glycosyl transferases group 1 J170_00538 PF08323 Starch synthase catalytic domain J170_00539 PF00128 Alpha amylase, catalytic domain J170_00539 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J170_00539 PF02806 Alpha amylase, C-terminal all-beta domain J170_00540 PF00128 Alpha amylase, catalytic domain J170_00540 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J170_00540 PF11941 Domain of unknown function (DUF3459) J170_00541 PF02446 4-alpha-glucanotransferase J170_00542 PF00128 Alpha amylase, catalytic domain J170_00544 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J170_00544 PF00128 Alpha amylase, catalytic domain J170_00545 PF13460 NAD(P)H-binding J170_00548 PF06903 VirK protein J170_00549 PF02321 Outer membrane efflux protein J170_00552 PF00873 AcrB/AcrD/AcrF family J170_00555 PF00270 DEAD/DEAH box helicase J170_00555 PF00271 Helicase conserved C-terminal domain J170_00557 PF02817 e3 binding domain J170_00557 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J170_00557 PF00364 Biotin-requiring enzyme J170_00559 PF02780 Transketolase, C-terminal domain J170_00559 PF02779 Transketolase, pyrimidine binding domain J170_00560 PF00676 Dehydrogenase E1 component J170_00562 PF03301 Tryptophan 2,3-dioxygenase J170_00563 PF00854 POT family J170_00565 PF01047 MarR family J170_00566 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J170_00567 PF04209 homogentisate 1,2-dioxygenase J170_00570 PF03334 Na+/H+ antiporter subunit J170_00571 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) J170_00573 PF00361 Proton-conducting membrane transporter J170_00574 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J170_00575 PF13244 Domain of unknown function (DUF4040) J170_00575 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J170_00575 PF00361 Proton-conducting membrane transporter J170_00575 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J170_00578 PF01447 Thermolysin metallopeptidase, catalytic domain J170_00578 PF01483 Proprotein convertase P-domain J170_00578 PF07504 Fungalysin/Thermolysin Propeptide Motif J170_00578 PF02868 Thermolysin metallopeptidase, alpha-helical domain J170_00579 PF00182 Chitinase class I J170_00583 PF01259 SAICAR synthetase J170_00584 PF05099 Tellurite resistance protein TerB J170_00584 PF00226 DnaJ domain J170_00586 PF00834 Ribulose-phosphate 3 epimerase family J170_00587 PF00583 Acetyltransferase (GNAT) family J170_00588 PF00781 Diacylglycerol kinase catalytic domain J170_00589 PF04715 Anthranilate synthase component I, N terminal region J170_00589 PF00425 chorismate binding enzyme J170_00591 PF00117 Glutamine amidotransferase class-I J170_00593 PF00591 Glycosyl transferase family, a/b domain J170_00593 PF02885 Glycosyl transferase family, helical bundle domain J170_00594 PF00218 Indole-3-glycerol phosphate synthase J170_00596 PF00027 Cyclic nucleotide-binding domain J170_00596 PF00325 Bacterial regulatory proteins, crp family J170_00597 PF02675 S-adenosylmethionine decarboxylase J170_00598 PF00893 Small Multidrug Resistance protein J170_00599 PF03232 Ubiquinone biosynthesis protein COQ7 J170_00600 PF00572 Ribosomal protein L13 J170_00601 PF00380 Ribosomal protein S9/S16 J170_00604 PF00293 NUDIX domain J170_00605 PF00210 Ferritin-like domain J170_00606 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_00606 PF00512 His Kinase A (phospho-acceptor) domain J170_00606 PF01627 Hpt domain J170_00606 PF00072 Response regulator receiver domain J170_00606 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J170_00606 PF00672 HAMP domain J170_00607 PF00486 Transcriptional regulatory protein, C terminal J170_00607 PF00072 Response regulator receiver domain J170_00611 PF01521 Iron-sulphur cluster biosynthesis J170_00614 PF09297 NADH pyrophosphatase zinc ribbon domain J170_00614 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain J170_00614 PF00293 NUDIX domain J170_00615 PF03186 CobD/Cbib protein J170_00615 PF17113 Regulatory signalling modulator protein AmpE J170_00618 PF07690 Major Facilitator Superfamily J170_00619 PF03466 LysR substrate binding domain J170_00619 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_00620 PF07690 Major Facilitator Superfamily J170_00621 PF12805 FUSC-like inner membrane protein yccS J170_00622 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J170_00622 PF02844 Phosphoribosylglycinamide synthetase, N domain J170_00622 PF02843 Phosphoribosylglycinamide synthetase, C domain J170_00624 PF01808 AICARFT/IMPCHase bienzyme J170_00624 PF02142 MGS-like domain J170_00625 PF01066 CDP-alcohol phosphatidyltransferase J170_00626 PF12147 Putative methyltransferase J170_00626 PF12146 Serine aminopeptidase, S33 J170_00627 PF00782 Dual specificity phosphatase, catalytic domain J170_00633 PF02954 Bacterial regulatory protein, Fis family J170_00636 PF01381 Helix-turn-helix J170_00641 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J170_00641 PF02785 Biotin carboxylase C-terminal domain J170_00641 PF00289 Biotin carboxylase, N-terminal domain J170_00643 PF00364 Biotin-requiring enzyme J170_00644 PF01220 Dehydroquinase class II J170_00645 PF11412 Disulphide bond corrector protein DsbC J170_00645 PF02683 Cytochrome C biogenesis protein transmembrane region J170_00646 PF03091 CutA1 divalent ion tolerance protein J170_00649 PF01852 START domain J170_00651 PF00106 short chain dehydrogenase J170_00652 PF04231 Endonuclease I J170_00653 PF00166 Chaperonin 10 Kd subunit J170_00654 PF00118 TCP-1/cpn60 chaperonin family J170_00656 PF07715 TonB-dependent Receptor Plug Domain J170_00656 PF00593 TonB dependent receptor J170_00657 PF00793 DAHP synthetase I family J170_00660 PF08450 SMP-30/Gluconolactonase/LRE-like region J170_00662 PF08335 GlnD PII-uridylyltransferase J170_00662 PF03710 Glutamate-ammonia ligase adenylyltransferase J170_00663 PF02592 Putative vitamin uptake transporter J170_00666 PF00881 Nitroreductase family J170_00667 PF04264 YceI-like domain J170_00671 PF16957 Malonate decarboxylase, alpha subunit, transporter J170_00672 PF06857 Malonate decarboxylase delta subunit (MdcD) J170_00673 PF01039 Carboxyl transferase domain J170_00675 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG J170_00676 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase J170_00678 PF00698 Acyl transferase domain J170_00680 PF00392 Bacterial regulatory proteins, gntR family J170_00680 PF07729 FCD domain J170_00681 PF13419 Haloacid dehalogenase-like hydrolase J170_00687 PF07745 Glycosyl hydrolase family 53 J170_00688 PF17831 Pyruvate dehydrogenase E1 component middle domain J170_00688 PF00456 Transketolase, thiamine diphosphate binding domain J170_00689 PF00665 Integrase core domain J170_00689 PF13333 Integrase core domain J170_00689 PF13276 HTH-like domain J170_00690 PF01527 Transposase J170_00691 PF00106 short chain dehydrogenase J170_00694 PF00106 short chain dehydrogenase J170_00696 PF13409 Glutathione S-transferase, N-terminal domain J170_00701 PF03176 MMPL family J170_00701 PF12823 Domain of unknown function (DUF3817) J170_00702 PF00326 Prolyl oligopeptidase family J170_00702 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J170_00703 PF07759 Protein of unknown function (DUF1615) J170_00704 PF00990 Diguanylate cyclase, GGDEF domain J170_00704 PF05230 MASE2 domain J170_00708 PF00892 EamA-like transporter family J170_00709 PF00497 Bacterial extracellular solute-binding proteins, family 3 J170_00712 PF00324 Amino acid permease J170_00714 PF01544 CorA-like Mg2+ transporter protein J170_00716 PF01204 Trehalase J170_00718 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J170_00718 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J170_00723 PF08447 PAS fold J170_00723 PF00563 EAL domain J170_00723 PF00990 Diguanylate cyclase, GGDEF domain J170_00723 PF08448 PAS fold J170_00724 PF00672 HAMP domain J170_00724 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_00724 PF02203 Tar ligand binding domain homologue J170_00725 PF00553 Cellulose binding domain J170_00725 PF00150 Cellulase (glycosyl hydrolase family 5) J170_00726 PF01740 STAS domain J170_00726 PF00916 Sulfate permease family J170_00727 PF00990 Diguanylate cyclase, GGDEF domain J170_00727 PF08448 PAS fold J170_00730 PF13632 Glycosyl transferase family group 2 J170_00732 PF06580 Histidine kinase J170_00732 PF07694 5TMR of 5TMR-LYT J170_00733 PF04397 LytTr DNA-binding domain J170_00733 PF00072 Response regulator receiver domain J170_00734 PF03900 Porphobilinogen deaminase, C-terminal domain J170_00734 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J170_00739 PF00326 Prolyl oligopeptidase family J170_00739 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J170_00741 PF00155 Aminotransferase class I and II J170_00742 PF00326 Prolyl oligopeptidase family J170_00742 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J170_00743 PF04304 Protein of unknown function (DUF454) J170_00745 PF01678 Diaminopimelate epimerase J170_00747 PF02899 Phage integrase, N-terminal SAM-like domain J170_00747 PF00589 Phage integrase family J170_00748 PF00227 Proteasome subunit J170_00749 PF00004 ATPase family associated with various cellular activities (AAA) J170_00749 PF07724 AAA domain (Cdc48 subfamily) J170_00749 PF10431 C-terminal, D2-small domain, of ClpB protein J170_00751 PF13673 Acetyltransferase (GNAT) domain J170_00752 PF13533 Biotin-lipoyl like J170_00754 PF01209 ubiE/COQ5 methyltransferase family J170_00755 PF00990 Diguanylate cyclase, GGDEF domain J170_00755 PF00563 EAL domain J170_00755 PF03707 Bacterial signalling protein N terminal repeat J170_00756 PF01433 Peptidase family M1 domain J170_00756 PF11838 ERAP1-like C-terminal domain J170_00759 PF13360 PQQ-like domain J170_00760 PF00497 Bacterial extracellular solute-binding proteins, family 3 J170_00763 PF08240 Alcohol dehydrogenase GroES-like domain J170_00763 PF00107 Zinc-binding dehydrogenase J170_00765 PF01590 GAF domain J170_00765 PF02954 Bacterial regulatory protein, Fis family J170_00765 PF00158 Sigma-54 interaction domain J170_00766 PF00294 pfkB family carbohydrate kinase J170_00768 PF04085 rod shape-determining protein MreC J170_00770 PF00905 Penicillin binding protein transpeptidase domain J170_00770 PF03717 Penicillin-binding Protein dimerisation domain J170_00771 PF01098 Cell cycle protein J170_00772 PF00295 Glycosyl hydrolases family 28 J170_00773 PF13406 Transglycosylase SLT domain J170_00774 PF05036 Sporulation related domain J170_00774 PF03330 Lytic transglycolase J170_00775 PF07943 Penicillin-binding protein 5, C-terminal domain J170_00775 PF00768 D-alanyl-D-alanine carboxypeptidase J170_00777 PF04359 Protein of unknown function (DUF493) J170_00778 PF03099 Biotin/lipoate A/B protein ligase family J170_00779 PF04055 Radical SAM superfamily J170_00779 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family J170_00780 PF11818 C-terminal domain of tail specific protease (DUF3340) J170_00780 PF00595 PDZ domain J170_00780 PF17804 Tail specific protease N-terminal domain J170_00780 PF03572 Peptidase family S41 J170_00782 PF03466 LysR substrate binding domain J170_00782 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_00784 PF00293 NUDIX domain J170_00784 PF01467 Cytidylyltransferase-like J170_00791 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J170_00791 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J170_00792 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J170_00792 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J170_00793 PF04972 BON domain J170_00794 PF00360 Phytochrome region J170_00794 PF08446 PAS fold J170_00794 PF00512 His Kinase A (phospho-acceptor) domain J170_00794 PF01590 GAF domain J170_00794 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_00795 PF00072 Response regulator receiver domain J170_00796 PF00512 His Kinase A (phospho-acceptor) domain J170_00796 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_00797 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J170_00798 PF00106 short chain dehydrogenase J170_00806 PF00263 Bacterial type II and III secretion system protein J170_00806 PF03958 Bacterial type II/III secretion system short domain J170_00807 PF00437 Type II/IV secretion system protein J170_00808 PF00482 Type II secretion system (T2SS), protein F J170_00809 PF08334 Type II secretion system (T2SS), protein G J170_00809 PF07963 Prokaryotic N-terminal methylation motif J170_00810 PF07963 Prokaryotic N-terminal methylation motif J170_00810 PF12019 Type II transport protein GspH J170_00812 PF07963 Prokaryotic N-terminal methylation motif J170_00812 PF11612 Type II secretion system (T2SS), protein J J170_00813 PF03934 Type II secretion system (T2SS), protein K J170_00819 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J170_00819 PF16355 Domain of unknown function (DUF4982) J170_00819 PF00703 Glycosyl hydrolases family 2 J170_00819 PF02837 Glycosyl hydrolases family 2, sugar binding domain J170_00819 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J170_00824 PF07690 Major Facilitator Superfamily J170_00825 PF00356 Bacterial regulatory proteins, lacI family J170_00826 PF01380 SIS domain J170_00827 PF01979 Amidohydrolase family J170_00829 PF01966 HD domain J170_00829 PF01743 Poly A polymerase head domain J170_00829 PF12627 Probable RNA and SrmB- binding site of polymerase A J170_00830 PF00732 GMC oxidoreductase J170_00830 PF05199 GMC oxidoreductase J170_00831 PF00171 Aldehyde dehydrogenase family J170_00832 PF02028 BCCT, betaine/carnitine/choline family transporter J170_00834 PF01323 DSBA-like thioredoxin domain J170_00837 PF00034 Cytochrome c J170_00838 PF01926 50S ribosome-binding GTPase J170_00839 PF00753 Metallo-beta-lactamase superfamily J170_00839 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain J170_00839 PF10996 Beta-Casp domain J170_00841 PF04107 Glutamate-cysteine ligase family 2(GCS2) J170_00842 PF00672 HAMP domain J170_00842 PF00512 His Kinase A (phospho-acceptor) domain J170_00842 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_00843 PF00486 Transcriptional regulatory protein, C terminal J170_00843 PF00072 Response regulator receiver domain J170_00846 PF02583 Metal-sensitive transcriptional repressor J170_00847 PF08240 Alcohol dehydrogenase GroES-like domain J170_00847 PF00107 Zinc-binding dehydrogenase J170_00848 PF04828 Glutathione-dependent formaldehyde-activating enzyme J170_00849 PF00756 Putative esterase J170_00850 PF00155 Aminotransferase class I and II J170_00850 PF00392 Bacterial regulatory proteins, gntR family J170_00851 PF02567 Phenazine biosynthesis-like protein J170_00852 PF00892 EamA-like transporter family J170_00854 PF12848 ABC transporter J170_00854 PF00005 ABC transporter J170_00856 PF00464 Serine hydroxymethyltransferase J170_00857 PF03477 ATP cone domain J170_00859 PF01872 RibD C-terminal domain J170_00859 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J170_00862 PF00677 Lumazine binding domain J170_00863 PF00925 GTP cyclohydrolase II J170_00863 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J170_00864 PF00885 6,7-dimethyl-8-ribityllumazine synthase J170_00865 PF01029 NusB family J170_00866 PF00586 AIR synthase related protein, N-terminal domain J170_00866 PF02769 AIR synthase related protein, C-terminal domain J170_00870 PF03814 Potassium-transporting ATPase A subunit J170_00872 PF02669 K+-transporting ATPase, c chain J170_00873 PF13492 GAF domain J170_00873 PF02702 Osmosensitive K+ channel His kinase sensor domain J170_00873 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_00873 PF00512 His Kinase A (phospho-acceptor) domain J170_00873 PF13493 Domain of unknown function (DUF4118) J170_00874 PF00072 Response regulator receiver domain J170_00874 PF00486 Transcriptional regulatory protein, C terminal J170_00877 PF01565 FAD binding domain J170_00877 PF02913 FAD linked oxidases, C-terminal domain J170_00878 PF04307 LexA-binding, inner membrane-associated putative hydrolase J170_00879 PF02021 Uncharacterised protein family UPF0102 J170_00881 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J170_00886 PF02381 MraZ protein, putative antitoxin-like J170_00887 PF01795 MraW methylase family J170_00888 PF04999 Cell division protein FtsL J170_00889 PF03717 Penicillin-binding Protein dimerisation domain J170_00889 PF00905 Penicillin binding protein transpeptidase domain J170_00890 PF08245 Mur ligase middle domain J170_00890 PF02875 Mur ligase family, glutamate ligase domain J170_00890 PF01225 Mur ligase family, catalytic domain J170_00891 PF02875 Mur ligase family, glutamate ligase domain J170_00891 PF08245 Mur ligase middle domain J170_00891 PF01225 Mur ligase family, catalytic domain J170_00892 PF00953 Glycosyl transferase family 4 J170_00893 PF01098 Cell cycle protein J170_00894 PF04101 Glycosyltransferase family 28 C-terminal domain J170_00894 PF03033 Glycosyltransferase family 28 N-terminal domain J170_00895 PF02875 Mur ligase family, glutamate ligase domain J170_00895 PF08245 Mur ligase middle domain J170_00895 PF01225 Mur ligase family, catalytic domain J170_00896 PF01820 D-ala D-ala ligase N-terminus J170_00896 PF07478 D-ala D-ala ligase C-terminus J170_00897 PF08478 POTRA domain, FtsQ-type J170_00897 PF03799 Cell division protein FtsQ J170_00898 PF02491 SHS2 domain inserted in FTSA J170_00899 PF12327 FtsZ family, C-terminal domain J170_00899 PF00091 Tubulin/FtsZ family, GTPase domain J170_00900 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase J170_00902 PF08525 Opacity-associated protein A N-terminal motif J170_00902 PF01551 Peptidase family M23 J170_00902 PF01476 LysM domain J170_00903 PF02810 SEC-C motif J170_00903 PF07517 SecA DEAD-like domain J170_00903 PF07516 SecA Wing and Scaffold domain J170_00903 PF01043 SecA preprotein cross-linking domain J170_00904 PF00293 NUDIX domain J170_00906 PF02219 Methylenetetrahydrofolate reductase J170_00909 PF08240 Alcohol dehydrogenase GroES-like domain J170_00909 PF00698 Acyl transferase domain J170_00909 PF00107 Zinc-binding dehydrogenase J170_00909 PF16197 Ketoacyl-synthetase C-terminal extension J170_00909 PF00109 Beta-ketoacyl synthase, N-terminal domain J170_00909 PF02801 Beta-ketoacyl synthase, C-terminal domain J170_00909 PF08659 KR domain J170_00909 PF00550 Phosphopantetheine attachment site J170_00909 PF14765 Polyketide synthase dehydratase J170_00910 PF00082 Subtilase family J170_00910 PF09286 Pro-kumamolisin, activation domain J170_00912 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J170_00913 PF00128 Alpha amylase, catalytic domain J170_00919 PF13649 Methyltransferase domain J170_00920 PF05221 S-adenosyl-L-homocysteine hydrolase J170_00920 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain J170_00923 PF00311 Phosphoenolpyruvate carboxylase J170_00928 PF00328 Histidine phosphatase superfamily (branch 2) J170_00929 PF02772 S-adenosylmethionine synthetase, central domain J170_00929 PF02773 S-adenosylmethionine synthetase, C-terminal domain J170_00929 PF00438 S-adenosylmethionine synthetase, N-terminal domain J170_00931 PF13649 Methyltransferase domain J170_00932 PF01207 Dihydrouridine synthase (Dus) J170_00935 PF00294 pfkB family carbohydrate kinase J170_00936 PF07670 Nucleoside recognition J170_00936 PF07662 Na+ dependent nucleoside transporter C-terminus J170_00936 PF01773 Na+ dependent nucleoside transporter N-terminus J170_00937 PF00248 Aldo/keto reductase family J170_00939 PF07715 TonB-dependent Receptor Plug Domain J170_00939 PF00593 TonB dependent receptor J170_00944 PF00528 Binding-protein-dependent transport system inner membrane component J170_00945 PF00005 ABC transporter J170_00947 PF02668 Taurine catabolism dioxygenase TauD, TfdA family J170_00949 PF00005 ABC transporter J170_00950 PF13472 GDSL-like Lipase/Acylhydrolase family J170_00951 PF00486 Transcriptional regulatory protein, C terminal J170_00951 PF00072 Response regulator receiver domain J170_00952 PF00512 His Kinase A (phospho-acceptor) domain J170_00952 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_00952 PF08521 Two-component sensor kinase N-terminal J170_00954 PF01219 Prokaryotic diacylglycerol kinase J170_00958 PF01790 Prolipoprotein diacylglyceryl transferase J170_00959 PF00303 Thymidylate synthase J170_00961 PF00186 Dihydrofolate reductase J170_00962 PF00158 Sigma-54 interaction domain J170_00963 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J170_00963 PF08028 Acyl-CoA dehydrogenase, C-terminal domain J170_00964 PF00005 ABC transporter J170_00965 PF00528 Binding-protein-dependent transport system inner membrane component J170_00967 PF00296 Luciferase-like monooxygenase J170_00968 PF03358 NADPH-dependent FMN reductase J170_00972 PF00296 Luciferase-like monooxygenase J170_00973 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J170_00974 PF00528 Binding-protein-dependent transport system inner membrane component J170_00977 PF00005 ABC transporter J170_00977 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J170_00978 PF00149 Calcineurin-like phosphoesterase J170_00979 PF04379 ApaG domain J170_00980 PF00398 Ribosomal RNA adenine dimethylase J170_00981 PF04166 Pyridoxal phosphate biosynthetic protein PdxA J170_00982 PF09312 SurA N-terminal domain J170_00982 PF00639 PPIC-type PPIASE domain J170_00983 PF03968 OstA-like protein J170_00983 PF04453 LPS transport system D J170_00986 PF00850 Histone deacetylase domain J170_00987 PF01923 Cobalamin adenosyltransferase J170_00989 PF01494 FAD binding domain J170_00990 PF01494 FAD binding domain J170_00994 PF07729 FCD domain J170_00994 PF00392 Bacterial regulatory proteins, gntR family J170_00995 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J170_00996 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit J170_00996 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J170_00997 PF03466 LysR substrate binding domain J170_00997 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_00998 PF00501 AMP-binding enzyme J170_00998 PF13193 AMP-binding enzyme C-terminal domain J170_00999 PF00171 Aldehyde dehydrogenase family J170_01000 PF00378 Enoyl-CoA hydratase/isomerase J170_01004 PF08450 SMP-30/Gluconolactonase/LRE-like region J170_01005 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J170_01005 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J170_01006 PF18125 RlmM ferredoxin-like domain J170_01006 PF01728 FtsJ-like methyltransferase J170_01009 PF00892 EamA-like transporter family J170_01010 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J170_01010 PF00749 tRNA synthetases class I (E and Q), catalytic domain J170_01013 PF00990 Diguanylate cyclase, GGDEF domain J170_01013 PF00072 Response regulator receiver domain J170_01014 PF00072 Response regulator receiver domain J170_01014 PF01627 Hpt domain J170_01014 PF00512 His Kinase A (phospho-acceptor) domain J170_01014 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_01014 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J170_01014 PF00672 HAMP domain J170_01015 PF00072 Response regulator receiver domain J170_01015 PF00196 Bacterial regulatory proteins, luxR family J170_01017 PF01625 Peptide methionine sulfoxide reductase J170_01019 PF00923 Transaldolase/Fructose-6-phosphate aldolase J170_01020 PF01272 Transcription elongation factor, GreA/GreB, C-term J170_01020 PF14760 Rnk N-terminus J170_01021 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_01021 PF03466 LysR substrate binding domain J170_01022 PF13192 Thioredoxin domain J170_01022 PF07992 Pyridine nucleotide-disulphide oxidoreductase J170_01023 PF00578 AhpC/TSA family J170_01023 PF10417 C-terminal domain of 1-Cys peroxiredoxin J170_01024 PF17827 PrmC N-terminal domain J170_01024 PF05175 Methyltransferase small domain J170_01025 PF00561 alpha/beta hydrolase fold J170_01027 PF00293 NUDIX domain J170_01028 PF00476 DNA polymerase family A J170_01028 PF01612 3'-5' exonuclease J170_01028 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J170_01028 PF01367 5'-3' exonuclease, C-terminal SAM fold J170_01034 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J170_01034 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J170_01034 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J170_01039 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J170_01040 PF02233 NAD(P) transhydrogenase beta subunit J170_01043 PF01063 Amino-transferase class IV J170_01044 PF00082 Subtilase family J170_01044 PF04151 Bacterial pre-peptidase C-terminal domain J170_01045 PF00082 Subtilase family J170_01045 PF04151 Bacterial pre-peptidase C-terminal domain J170_01046 PF00082 Subtilase family J170_01046 PF04151 Bacterial pre-peptidase C-terminal domain J170_01047 PF04073 Aminoacyl-tRNA editing domain J170_01049 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain J170_01049 PF17189 Glycosyl hydrolase family 30 beta sandwich domain J170_01052 PF03358 NADPH-dependent FMN reductase J170_01053 PF03631 Virulence factor BrkB J170_01054 PF08534 Redoxin J170_01055 PF00708 Acylphosphatase J170_01057 PF03976 Polyphosphate kinase 2 (PPK2) J170_01058 PF00994 Probable molybdopterin binding domain J170_01060 PF00472 RF-1 domain J170_01060 PF03462 PCRF domain J170_01061 PF01488 Shikimate / quinate 5-dehydrogenase J170_01061 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J170_01061 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J170_01063 PF03550 Outer membrane lipoprotein LolB J170_01064 PF00288 GHMP kinases N terminal domain J170_01064 PF08544 GHMP kinases C terminal J170_01066 PF14572 Phosphoribosyl synthetase-associated domain J170_01066 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J170_01067 PF14693 Ribosomal protein TL5, C-terminal domain J170_01067 PF01386 Ribosomal L25p family J170_01068 PF01195 Peptidyl-tRNA hydrolase J170_01069 PF06071 Protein of unknown function (DUF933) J170_01069 PF01926 50S ribosome-binding GTPase J170_01073 PF03143 Elongation factor Tu C-terminal domain J170_01073 PF00009 Elongation factor Tu GTP binding domain J170_01073 PF03144 Elongation factor Tu domain 2 J170_01075 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J170_01076 PF00467 KOW motif J170_01076 PF02357 Transcription termination factor nusG J170_01077 PF00298 Ribosomal protein L11, RNA binding domain J170_01077 PF03946 Ribosomal protein L11, N-terminal domain J170_01078 PF00687 Ribosomal protein L1p/L10e family J170_01079 PF00466 Ribosomal protein L10 J170_01080 PF16320 Ribosomal protein L7/L12 dimerisation domain J170_01080 PF00542 Ribosomal protein L7/L12 C-terminal domain J170_01082 PF04560 RNA polymerase Rpb2, domain 7 J170_01082 PF00562 RNA polymerase Rpb2, domain 6 J170_01082 PF04561 RNA polymerase Rpb2, domain 2 J170_01082 PF04565 RNA polymerase Rpb2, domain 3 J170_01082 PF10385 RNA polymerase beta subunit external 1 domain J170_01082 PF04563 RNA polymerase beta subunit J170_01083 PF00623 RNA polymerase Rpb1, domain 2 J170_01083 PF04997 RNA polymerase Rpb1, domain 1 J170_01083 PF04998 RNA polymerase Rpb1, domain 5 J170_01083 PF05000 RNA polymerase Rpb1, domain 4 J170_01083 PF04983 RNA polymerase Rpb1, domain 3 J170_01084 PF00164 Ribosomal protein S12/S23 J170_01085 PF00177 Ribosomal protein S7p/S5e J170_01086 PF03144 Elongation factor Tu domain 2 J170_01086 PF00009 Elongation factor Tu GTP binding domain J170_01086 PF14492 Elongation Factor G, domain II J170_01086 PF00679 Elongation factor G C-terminus J170_01086 PF03764 Elongation factor G, domain IV J170_01087 PF03144 Elongation factor Tu domain 2 J170_01087 PF00009 Elongation factor Tu GTP binding domain J170_01087 PF03143 Elongation factor Tu C-terminal domain J170_01088 PF00338 Ribosomal protein S10p/S20e J170_01089 PF00297 Ribosomal protein L3 J170_01090 PF00573 Ribosomal protein L4/L1 family J170_01091 PF00276 Ribosomal protein L23 J170_01092 PF03947 Ribosomal Proteins L2, C-terminal domain J170_01092 PF00181 Ribosomal Proteins L2, RNA binding domain J170_01093 PF00203 Ribosomal protein S19 J170_01094 PF00237 Ribosomal protein L22p/L17e J170_01095 PF00189 Ribosomal protein S3, C-terminal domain J170_01095 PF07650 KH domain J170_01096 PF00252 Ribosomal protein L16p/L10e J170_01097 PF00831 Ribosomal L29 protein J170_01098 PF00366 Ribosomal protein S17 J170_01099 PF00238 Ribosomal protein L14p/L23e J170_01100 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J170_01100 PF00467 KOW motif J170_01101 PF00673 ribosomal L5P family C-terminus J170_01101 PF00281 Ribosomal protein L5 J170_01102 PF00253 Ribosomal protein S14p/S29e J170_01103 PF00410 Ribosomal protein S8 J170_01104 PF00347 Ribosomal protein L6 J170_01105 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J170_01106 PF03719 Ribosomal protein S5, C-terminal domain J170_01106 PF00333 Ribosomal protein S5, N-terminal domain J170_01107 PF00327 Ribosomal protein L30p/L7e J170_01108 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J170_01109 PF00344 SecY translocase J170_01110 PF00416 Ribosomal protein S13/S18 J170_01111 PF00411 Ribosomal protein S11 J170_01112 PF00163 Ribosomal protein S4/S9 N-terminal domain J170_01112 PF01479 S4 domain J170_01113 PF01000 RNA polymerase Rpb3/RpoA insert domain J170_01113 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J170_01113 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J170_01114 PF01196 Ribosomal protein L17 J170_01115 PF02600 Disulfide bond formation protein DsbB J170_01117 PF01474 Class-II DAHP synthetase family J170_01119 PF01425 Amidase J170_01122 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J170_01123 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J170_01123 PF00056 lactate/malate dehydrogenase, NAD binding domain J170_01124 PF00043 Glutathione S-transferase, C-terminal domain J170_01124 PF02798 Glutathione S-transferase, N-terminal domain J170_01126 PF07992 Pyridine nucleotide-disulphide oxidoreductase J170_01126 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J170_01127 PF00107 Zinc-binding dehydrogenase J170_01127 PF08240 Alcohol dehydrogenase GroES-like domain J170_01128 PF00691 OmpA family J170_01128 PF05736 OprF membrane domain J170_01130 PF00849 RNA pseudouridylate synthase J170_01132 PF00155 Aminotransferase class I and II J170_01134 PF00528 Binding-protein-dependent transport system inner membrane component J170_01135 PF00528 Binding-protein-dependent transport system inner membrane component J170_01136 PF12857 TOBE-like domain J170_01136 PF17850 CysA C-terminal regulatory domain J170_01136 PF00005 ABC transporter J170_01138 PF08240 Alcohol dehydrogenase GroES-like domain J170_01138 PF00107 Zinc-binding dehydrogenase J170_01140 PF04185 Phosphoesterase family J170_01140 PF05506 Domain of unknown function (DUF756) J170_01141 PF10459 Peptidase S46 J170_01142 PF10459 Peptidase S46 J170_01143 PF00300 Histidine phosphatase superfamily (branch 1) J170_01144 PF02875 Mur ligase family, glutamate ligase domain J170_01144 PF08245 Mur ligase middle domain J170_01147 PF00156 Phosphoribosyl transferase domain J170_01148 PF04305 Protein of unknown function (DUF455) J170_01152 PF00149 Calcineurin-like phosphoesterase J170_01154 PF01569 PAP2 superfamily J170_01155 PF13439 Glycosyltransferase Family 4 J170_01155 PF00534 Glycosyl transferases group 1 J170_01156 PF02541 Ppx/GppA phosphatase family J170_01157 PF02503 Polyphosphate kinase middle domain J170_01157 PF13089 Polyphosphate kinase N-terminal domain J170_01157 PF13090 Polyphosphate kinase C-terminal domain 2 J170_01157 PF17941 Polyphosphate kinase C-terminal domain 1 J170_01158 PF11808 Phosphate regulon sensor protein PhoR J170_01158 PF00989 PAS fold J170_01158 PF00512 His Kinase A (phospho-acceptor) domain J170_01158 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_01159 PF00486 Transcriptional regulatory protein, C terminal J170_01159 PF00072 Response regulator receiver domain J170_01160 PF01435 Peptidase family M48 J170_01160 PF13181 Tetratricopeptide repeat J170_01161 PF00462 Glutaredoxin J170_01163 PF00180 Isocitrate/isopropylmalate dehydrogenase J170_01170 PF01527 Transposase J170_01193 PF01527 Transposase J170_01194 PF13276 HTH-like domain J170_01194 PF13333 Integrase core domain J170_01194 PF00665 Integrase core domain J170_01197 PF00989 PAS fold J170_01197 PF00512 His Kinase A (phospho-acceptor) domain J170_01197 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_01200 PF05698 Bacterial trigger factor protein (TF) C-terminus J170_01200 PF05697 Bacterial trigger factor protein (TF) J170_01201 PF00574 Clp protease J170_01202 PF07724 AAA domain (Cdc48 subfamily) J170_01202 PF06689 ClpX C4-type zinc finger J170_01202 PF10431 C-terminal, D2-small domain, of ClpB protein J170_01203 PF02190 ATP-dependent protease La (LON) substrate-binding domain J170_01203 PF00004 ATPase family associated with various cellular activities (AAA) J170_01203 PF05362 Lon protease (S16) C-terminal proteolytic domain J170_01204 PF00216 Bacterial DNA-binding protein J170_01210 PF05257 CHAP domain J170_01210 PF01476 LysM domain J170_01211 PF00753 Metallo-beta-lactamase superfamily J170_01211 PF16123 Hydroxyacylglutathione hydrolase C-terminus J170_01213 PF00075 RNase H J170_01214 PF00929 Exonuclease J170_01218 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J170_01220 PF12706 Beta-lactamase superfamily domain J170_01220 PF00753 Metallo-beta-lactamase superfamily J170_01221 PF04055 Radical SAM superfamily J170_01221 PF06463 Molybdenum Cofactor Synthesis C J170_01222 PF01967 MoaC family J170_01223 PF02597 ThiS family J170_01224 PF02391 MoaE protein J170_01227 PF01527 Transposase J170_01234 PF12169 DNA polymerase III subunits gamma and tau domain III J170_01234 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding J170_01234 PF12170 DNA polymerase III tau subunit V interacting with alpha J170_01235 PF02575 YbaB/EbfC DNA-binding family J170_01236 PF02132 RecR protein J170_01236 PF13662 Toprim domain J170_01237 PF01230 HIT domain J170_01239 PF11992 Domain of unknown function (DUF3488) J170_01239 PF13559 Domain of unknown function (DUF4129) J170_01239 PF01841 Transglutaminase-like superfamily J170_01241 PF07726 ATPase family associated with various cellular activities (AAA) J170_01241 PF17863 AAA lid domain J170_01245 PF02545 Maf-like protein J170_01246 PF02620 Large ribosomal RNA subunit accumulation protein YceD J170_01247 PF01783 Ribosomal L32p protein family J170_01248 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J170_01248 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J170_01250 PF00698 Acyl transferase domain J170_01252 PF00550 Phosphopantetheine attachment site J170_01253 PF00109 Beta-ketoacyl synthase, N-terminal domain J170_01253 PF02801 Beta-ketoacyl synthase, C-terminal domain J170_01254 PF04715 Anthranilate synthase component I, N terminal region J170_01254 PF00425 chorismate binding enzyme J170_01255 PF02618 YceG-like family J170_01256 PF09115 DNA polymerase III, delta subunit, C terminal J170_01260 PF00158 Sigma-54 interaction domain J170_01260 PF02954 Bacterial regulatory protein, Fis family J170_01260 PF06506 Propionate catabolism activator J170_01262 PF00285 Citrate synthase, C-terminal domain J170_01263 PF00694 Aconitase C-terminal domain J170_01263 PF00330 Aconitase family (aconitate hydratase) J170_01264 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH J170_01266 PF04303 PrpF protein J170_01267 PF00593 TonB dependent receptor J170_01267 PF07715 TonB-dependent Receptor Plug Domain J170_01269 PF00207 Alpha-2-macroglobulin family J170_01269 PF01835 MG2 domain J170_01269 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain J170_01269 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain J170_01269 PF11974 Bacterial alpha-2-macroglobulin MG3 domain J170_01269 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain J170_01269 PF17962 Bacterial macroglobulin domain 6 J170_01269 PF07703 Alpha-2-macroglobulin bait region domain J170_01272 PF00912 Transglycosylase J170_01272 PF06832 Penicillin-Binding Protein C-terminus Family J170_01272 PF00905 Penicillin binding protein transpeptidase domain J170_01274 PF08534 Redoxin J170_01276 PF01556 DnaJ C terminal domain J170_01276 PF00226 DnaJ domain J170_01278 PF00072 Response regulator receiver domain J170_01280 PF01145 SPFH domain / Band 7 family J170_01280 PF12221 Bacterial membrane protein N terminal J170_01281 PF01145 SPFH domain / Band 7 family J170_01283 PF00709 Adenylosuccinate synthetase J170_01284 PF01433 Peptidase family M1 domain J170_01284 PF11838 ERAP1-like C-terminal domain J170_01287 PF00440 Bacterial regulatory proteins, tetR family J170_01300 PF00300 Histidine phosphatase superfamily (branch 1) J170_01300 PF13456 Reverse transcriptase-like J170_01301 PF01256 Carbohydrate kinase J170_01303 PF00723 Glycosyl hydrolases family 15 J170_01305 PF17678 Glycosyl hydrolase family 92 N-terminal domain J170_01305 PF07971 Glycosyl hydrolase family 92 J170_01309 PF07992 Pyridine nucleotide-disulphide oxidoreductase J170_01313 PF17755 UvrA DNA-binding domain J170_01314 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J170_01314 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J170_01315 PF00941 FAD binding domain in molybdopterin dehydrogenase J170_01315 PF03450 CO dehydrogenase flavoprotein C-terminal domain J170_01316 PF01799 [2Fe-2S] binding domain J170_01316 PF00111 2Fe-2S iron-sulfur cluster binding domain J170_01323 PF01726 LexA DNA binding domain J170_01323 PF00717 Peptidase S24-like J170_01326 PF07733 Bacterial DNA polymerase III alpha NTPase domain J170_01326 PF02811 PHP domain J170_01326 PF14579 Helix-hairpin-helix motif J170_01326 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J170_01327 PF00326 Prolyl oligopeptidase family J170_01329 PF03169 OPT oligopeptide transporter protein J170_01332 PF00326 Prolyl oligopeptidase family J170_01332 PF07676 WD40-like Beta Propeller Repeat J170_01332 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J170_01335 PF02311 AraC-like ligand binding domain J170_01335 PF12833 Helix-turn-helix domain J170_01340 PF18011 C-terminal domain found in long catalases J170_01340 PF00199 Catalase J170_01340 PF06628 Catalase-related immune-responsive J170_01341 PF00248 Aldo/keto reductase family J170_01342 PF00135 Carboxylesterase family J170_01343 PF02347 Glycine cleavage system P-protein J170_01346 PF07690 Major Facilitator Superfamily J170_01349 PF00884 Sulfatase J170_01349 PF08019 Phosphoethanolamine transferase EptA/EptB J170_01352 PF00486 Transcriptional regulatory protein, C terminal J170_01352 PF00072 Response regulator receiver domain J170_01353 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_01353 PF08521 Two-component sensor kinase N-terminal J170_01353 PF00512 His Kinase A (phospho-acceptor) domain J170_01355 PF03776 Septum formation topological specificity factor MinE J170_01356 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J170_01357 PF03775 Septum formation inhibitor MinC, C-terminal domain J170_01357 PF05209 Septum formation inhibitor MinC, N-terminal domain J170_01359 PF07730 Histidine kinase J170_01360 PF00196 Bacterial regulatory proteins, luxR family J170_01360 PF00072 Response regulator receiver domain J170_01363 PF00730 HhH-GPD superfamily base excision DNA repair protein J170_01368 PF02222 ATP-grasp domain J170_01370 PF04376 Arginine-tRNA-protein transferase, N terminus J170_01370 PF04377 Arginine-tRNA-protein transferase, C terminus J170_01376 PF00378 Enoyl-CoA hydratase/isomerase J170_01379 PF17760 UvrA interaction domain J170_01379 PF00005 ABC transporter J170_01379 PF17755 UvrA DNA-binding domain J170_01380 PF00829 Ribosomal prokaryotic L21 protein J170_01381 PF01016 Ribosomal L27 protein J170_01382 PF01018 GTP1/OBG J170_01382 PF01926 50S ribosome-binding GTPase J170_01383 PF01649 Ribosomal protein S20 J170_01384 PF03023 Lipid II flippase MurJ J170_01385 PF01687 Riboflavin kinase J170_01385 PF06574 FAD synthetase J170_01386 PF00133 tRNA synthetases class I (I, L, M and V) J170_01386 PF06827 Zinc finger found in FPG and IleRS J170_01386 PF08264 Anticodon-binding domain of tRNA J170_01387 PF01252 Signal peptidase (SPase) II J170_01388 PF02401 LytB protein J170_01390 PF06481 COX Aromatic Rich Motif J170_01390 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J170_01391 PF00115 Cytochrome C and Quinol oxidase polypeptide I J170_01392 PF00510 Cytochrome c oxidase subunit III J170_01393 PF03626 Prokaryotic Cytochrome C oxidase subunit IV J170_01395 PF18073 Rubredoxin metal binding domain J170_01396 PF05656 Protein of unknown function (DUF805) J170_01398 PF12833 Helix-turn-helix domain J170_01399 PF00183 Hsp90 protein J170_01399 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_01401 PF08678 Rsbr N terminal J170_01401 PF01740 STAS domain J170_01402 PF01740 STAS domain J170_01403 PF13581 Histidine kinase-like ATPase domain J170_01405 PF00672 HAMP domain J170_01405 PF00512 His Kinase A (phospho-acceptor) domain J170_01405 PF01627 Hpt domain J170_01405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_01405 PF17149 Periplasmic sensor domain found in signal transduction proteins J170_01405 PF00072 Response regulator receiver domain J170_01406 PF08448 PAS fold J170_01406 PF00512 His Kinase A (phospho-acceptor) domain J170_01406 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_01406 PF13188 PAS domain J170_01406 PF00072 Response regulator receiver domain J170_01407 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J170_01407 PF04616 Glycosyl hydrolases family 43 J170_01408 PF07715 TonB-dependent Receptor Plug Domain J170_01408 PF00593 TonB dependent receptor J170_01409 PF00085 Thioredoxin J170_01410 PF07237 Protein of unknown function (DUF1428) J170_01411 PF13493 Domain of unknown function (DUF4118) J170_01411 PF13492 GAF domain J170_01411 PF02702 Osmosensitive K+ channel His kinase sensor domain J170_01411 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_01411 PF00512 His Kinase A (phospho-acceptor) domain J170_01412 PF01339 CheB methylesterase J170_01413 PF01739 CheR methyltransferase, SAM binding domain J170_01413 PF03705 CheR methyltransferase, all-alpha domain J170_01414 PF01627 Hpt domain J170_01414 PF00672 HAMP domain J170_01414 PF00512 His Kinase A (phospho-acceptor) domain J170_01414 PF00072 Response regulator receiver domain J170_01414 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_01414 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J170_01415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_01415 PF13426 PAS domain J170_01415 PF00072 Response regulator receiver domain J170_01416 PF00072 Response regulator receiver domain J170_01417 PF00722 Glycosyl hydrolases family 16 J170_01418 PF06964 Alpha-L-arabinofuranosidase C-terminal domain J170_01419 PF01263 Aldose 1-epimerase J170_01420 PF01578 Cytochrome C assembly protein J170_01421 PF02978 Signal peptide binding domain J170_01421 PF00448 SRP54-type protein, GTPase domain J170_01421 PF02881 SRP54-type protein, helical bundle domain J170_01422 PF03060 Nitronate monooxygenase J170_01423 PF01063 Amino-transferase class IV J170_01424 PF00886 Ribosomal protein S16 J170_01425 PF01782 RimM N-terminal domain J170_01425 PF05239 PRC-barrel domain J170_01426 PF01746 tRNA (Guanine-1)-methyltransferase J170_01427 PF01245 Ribosomal protein L19 J170_01428 PF01554 MatE J170_01429 PF01554 MatE J170_01432 PF01479 S4 domain J170_01433 PF00141 Peroxidase J170_01435 PF00488 MutS domain V J170_01435 PF05190 MutS family domain IV J170_01435 PF05188 MutS domain II J170_01435 PF01624 MutS domain I J170_01435 PF05192 MutS domain III J170_01438 PF03527 RHS protein J170_01438 PF05593 RHS Repeat J170_01442 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J170_01442 PF16355 Domain of unknown function (DUF4982) J170_01442 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J170_01442 PF02837 Glycosyl hydrolases family 2, sugar binding domain J170_01442 PF00703 Glycosyl hydrolases family 2 J170_01443 PF07745 Glycosyl hydrolase family 53 J170_01445 PF09856 Predicted transcriptional regulator (DUF2083) J170_01445 PF06114 IrrE N-terminal-like domain J170_01445 PF01381 Helix-turn-helix J170_01446 PF00171 Aldehyde dehydrogenase family J170_01447 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J170_01447 PF02770 Acyl-CoA dehydrogenase, middle domain J170_01447 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J170_01448 PF00378 Enoyl-CoA hydratase/isomerase J170_01449 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J170_01449 PF00378 Enoyl-CoA hydratase/isomerase J170_01449 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J170_01450 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J170_01450 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J170_01451 PF01545 Cation efflux family J170_01452 PF00378 Enoyl-CoA hydratase/isomerase J170_01452 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J170_01452 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J170_01453 PF04542 Sigma-70 region 2 J170_01453 PF08281 Sigma-70, region 4 J170_01455 PF13180 PDZ domain J170_01456 PF06421 GTP-binding protein LepA C-terminus J170_01456 PF00009 Elongation factor Tu GTP binding domain J170_01456 PF03144 Elongation factor Tu domain 2 J170_01456 PF00679 Elongation factor G C-terminus J170_01457 PF10502 Signal peptidase, peptidase S26 J170_01459 PF00035 Double-stranded RNA binding motif J170_01459 PF14622 Ribonuclease-III-like J170_01460 PF01926 50S ribosome-binding GTPase J170_01460 PF07650 KH domain J170_01461 PF11967 Recombination protein O N terminal J170_01461 PF02565 Recombination protein O C terminal J170_01463 PF05958 tRNA (Uracil-5-)-methyltransferase J170_01465 PF01323 DSBA-like thioredoxin domain J170_01466 PF01593 Flavin containing amine oxidoreductase J170_01467 PF04244 Deoxyribodipyrimidine photo-lyase-related protein J170_01468 PF00933 Glycosyl hydrolase family 3 N terminal domain J170_01470 PF01048 Phosphorylase superfamily J170_01471 PF00313 'Cold-shock' DNA-binding domain J170_01472 PF01494 FAD binding domain J170_01474 PF00270 DEAD/DEAH box helicase J170_01474 PF08494 DEAD/H associated J170_01474 PF00271 Helicase conserved C-terminal domain J170_01475 PF04679 ATP dependent DNA ligase C terminal region J170_01475 PF04675 DNA ligase N terminus J170_01475 PF01068 ATP dependent DNA ligase domain J170_01477 PF04675 DNA ligase N terminus J170_01477 PF04679 ATP dependent DNA ligase C terminal region J170_01477 PF01068 ATP dependent DNA ligase domain J170_01480 PF00072 Response regulator receiver domain J170_01480 PF00990 Diguanylate cyclase, GGDEF domain J170_01483 PF02803 Thiolase, C-terminal domain J170_01483 PF00108 Thiolase, N-terminal domain J170_01484 PF00082 Subtilase family J170_01484 PF12951 Passenger-associated-transport-repeat J170_01484 PF03797 Autotransporter beta-domain J170_01485 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J170_01485 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain J170_01487 PF01863 Protein of unknown function DUF45 J170_01488 PF07043 Protein of unknown function (DUF1328) J170_01490 PF01258 Prokaryotic dksA/traR C4-type zinc finger J170_01494 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J170_01496 PF03831 PhnA domain J170_01496 PF08274 PhnA Zinc-Ribbon J170_01497 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J170_01498 PF07690 Major Facilitator Superfamily J170_01505 PF09924 Uncharacterised conserved protein (DUF2156) J170_01505 PF03706 Lysylphosphatidylglycerol synthase TM region J170_01508 PF01042 Endoribonuclease L-PSP J170_01517 PF04545 Sigma-70, region 4 J170_01517 PF04542 Sigma-70 region 2 J170_01520 PF04060 Putative Fe-S cluster J170_01522 PF09334 tRNA synthetases class I (M) J170_01522 PF01588 Putative tRNA binding domain J170_01525 PF00005 ABC transporter J170_01525 PF13732 Domain of unknown function (DUF4162) J170_01526 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J170_01527 PF00324 Amino acid permease J170_01528 PF02574 Homocysteine S-methyltransferase J170_01530 PF02592 Putative vitamin uptake transporter J170_01534 PF03551 Transcriptional regulator PadR-like family J170_01541 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J170_01542 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J170_01542 PF14579 Helix-hairpin-helix motif J170_01542 PF02811 PHP domain J170_01542 PF01336 OB-fold nucleic acid binding domain J170_01542 PF07733 Bacterial DNA polymerase III alpha NTPase domain J170_01543 PF01351 Ribonuclease HII J170_01544 PF02684 Lipid-A-disaccharide synthetase J170_01545 PF00132 Bacterial transferase hexapeptide (six repeats) J170_01545 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 J170_01546 PF07977 FabA-like domain J170_01547 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD J170_01547 PF00132 Bacterial transferase hexapeptide (six repeats) J170_01549 PF07244 Surface antigen variable number repeat J170_01549 PF01103 Surface antigen J170_01550 PF02163 Peptidase family M50 J170_01550 PF17820 PDZ domain J170_01551 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J170_01551 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J170_01551 PF13288 DXP reductoisomerase C-terminal domain J170_01553 PF01255 Putative undecaprenyl diphosphate synthase J170_01554 PF01765 Ribosome recycling factor J170_01555 PF00696 Amino acid kinase family J170_01556 PF00990 Diguanylate cyclase, GGDEF domain J170_01556 PF00072 Response regulator receiver domain J170_01557 PF00889 Elongation factor TS J170_01558 PF00318 Ribosomal protein S2 J170_01565 PF00557 Metallopeptidase family M24 J170_01566 PF01909 Nucleotidyltransferase domain J170_01566 PF08335 GlnD PII-uridylyltransferase J170_01566 PF01966 HD domain J170_01567 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal J170_01567 PF14602 Hexapeptide repeat of succinyl-transferase J170_01567 PF00132 Bacterial transferase hexapeptide (six repeats) J170_01568 PF03960 ArsC family J170_01569 PF07687 Peptidase dimerisation domain J170_01569 PF01546 Peptidase family M20/M25/M40 J170_01570 PF00733 Asparagine synthase J170_01570 PF13537 Glutamine amidotransferase domain J170_01572 PF00593 TonB dependent receptor J170_01572 PF07715 TonB-dependent Receptor Plug Domain J170_01574 PF01804 Penicillin amidase J170_01575 PF00210 Ferritin-like domain J170_01576 PF05724 Thiopurine S-methyltransferase (TPMT) J170_01578 PF00521 DNA gyrase/topoisomerase IV, subunit A J170_01578 PF03989 DNA gyrase C-terminal domain, beta-propeller J170_01581 PF02321 Outer membrane efflux protein J170_01582 PF00529 HlyD membrane-fusion protein of T1SS J170_01582 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J170_01583 PF07690 Major Facilitator Superfamily J170_01585 PF00933 Glycosyl hydrolase family 3 N terminal domain J170_01585 PF14310 Fibronectin type III-like domain J170_01585 PF01915 Glycosyl hydrolase family 3 C-terminal domain J170_01587 PF00854 POT family J170_01592 PF12802 MarR family J170_01593 PF01432 Peptidase family M3 J170_01594 PF00255 Glutathione peroxidase J170_01595 PF00175 Oxidoreductase NAD-binding domain J170_01595 PF00970 Oxidoreductase FAD-binding domain J170_01596 PF00005 ABC transporter J170_01597 PF05683 Fumarase C-terminus J170_01597 PF05681 Fumarate hydratase (Fumerase) J170_01599 PF00484 Carbonic anhydrase J170_01600 PF02253 Phospholipase A1 J170_01602 PF00313 'Cold-shock' DNA-binding domain J170_01605 PF00899 ThiF family J170_01606 PF01026 TatD related DNase J170_01609 PF02770 Acyl-CoA dehydrogenase, middle domain J170_01609 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J170_01609 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J170_01611 PF00043 Glutathione S-transferase, C-terminal domain J170_01611 PF02798 Glutathione S-transferase, N-terminal domain J170_01612 PF00733 Asparagine synthase J170_01612 PF13537 Glutamine amidotransferase domain J170_01613 PF03358 NADPH-dependent FMN reductase J170_01614 PF03796 DnaB-like helicase C terminal domain J170_01614 PF00772 DnaB-like helicase N terminal domain J170_01615 PF00875 DNA photolyase J170_01615 PF03441 FAD binding domain of DNA photolyase J170_01616 PF05736 OprF membrane domain J170_01616 PF00691 OmpA family J170_01618 PF03466 LysR substrate binding domain J170_01618 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_01621 PF00529 HlyD membrane-fusion protein of T1SS J170_01621 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J170_01622 PF00873 AcrB/AcrD/AcrF family J170_01623 PF00106 short chain dehydrogenase J170_01624 PF02321 Outer membrane efflux protein J170_01625 PF08448 PAS fold J170_01625 PF00990 Diguanylate cyclase, GGDEF domain J170_01627 PF00990 Diguanylate cyclase, GGDEF domain J170_01644 PF01527 Transposase J170_01653 PF00082 Subtilase family J170_01654 PF01668 SmpB protein J170_01655 PF03364 Polyketide cyclase / dehydrase and lipid transport J170_01656 PF03658 RnfH family Ubiquitin J170_01657 PF04355 SmpA / OmlA family J170_01658 PF01475 Ferric uptake regulator family J170_01659 PF02463 RecF/RecN/SMC N terminal domain J170_01660 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding J170_01660 PF01628 HrcA protein C terminal domain J170_01661 PF01025 GrpE J170_01662 PF00012 Hsp70 protein J170_01663 PF00684 DnaJ central domain J170_01663 PF00226 DnaJ domain J170_01663 PF01556 DnaJ C terminal domain J170_01665 PF08543 Phosphomethylpyrimidine kinase J170_01671 PF00664 ABC transporter transmembrane region J170_01671 PF03412 Peptidase C39 family J170_01671 PF00005 ABC transporter J170_01672 PF03466 LysR substrate binding domain J170_01672 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_01673 PF00005 ABC transporter J170_01673 PF00664 ABC transporter transmembrane region J170_01674 PF01205 Uncharacterized protein family UPF0029 J170_01675 PF03641 Possible lysine decarboxylase J170_01676 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J170_01676 PF07992 Pyridine nucleotide-disulphide oxidoreductase J170_01677 PF00364 Biotin-requiring enzyme J170_01677 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J170_01677 PF02817 e3 binding domain J170_01678 PF16078 2-oxoglutarate dehydrogenase N-terminus J170_01678 PF02779 Transketolase, pyrimidine binding domain J170_01678 PF16870 2-oxoglutarate dehydrogenase C-terminal J170_01678 PF00676 Dehydrogenase E1 component J170_01680 PF08007 Cupin superfamily protein J170_01682 PF08328 Adenylosuccinate lyase C-terminal J170_01682 PF00206 Lyase J170_01684 PF01595 Cyclin M transmembrane N-terminal domain J170_01684 PF03471 Transporter associated domain J170_01684 PF00571 CBS domain J170_01685 PF00206 Lyase J170_01685 PF10415 Fumarase C C-terminus J170_01690 PF00005 ABC transporter J170_01691 PF00392 Bacterial regulatory proteins, gntR family J170_01693 PF00255 Glutathione peroxidase J170_01694 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J170_01694 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J170_01695 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J170_01695 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J170_01695 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J170_01696 PF04102 SlyX J170_01699 PF00356 Bacterial regulatory proteins, lacI family J170_01700 PF07690 Major Facilitator Superfamily J170_01701 PF00294 pfkB family carbohydrate kinase J170_01703 PF00809 Pterin binding enzyme J170_01703 PF02965 Vitamin B12 dependent methionine synthase, activation domain J170_01703 PF02607 B12 binding domain J170_01703 PF02310 B12 binding domain J170_01703 PF02574 Homocysteine S-methyltransferase J170_01704 PF00809 Pterin binding enzyme J170_01704 PF02574 Homocysteine S-methyltransferase J170_01705 PF01209 ubiE/COQ5 methyltransferase family J170_01706 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J170_01706 PF02770 Acyl-CoA dehydrogenase, middle domain J170_01706 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J170_01709 PF17876 Cold shock domain J170_01709 PF00575 S1 RNA binding domain J170_01709 PF00773 RNB domain J170_01709 PF08206 Ribonuclease B OB domain J170_01709 PF08461 Ribonuclease R winged-helix domain J170_01711 PF08032 RNA 2'-O ribose methyltransferase substrate binding J170_01711 PF00588 SpoU rRNA Methylase family J170_01712 PF00990 Diguanylate cyclase, GGDEF domain J170_01712 PF07694 5TMR of 5TMR-LYT J170_01713 PF00929 Exonuclease J170_01715 PF01895 PhoU domain J170_01716 PF00005 ABC transporter J170_01717 PF00528 Binding-protein-dependent transport system inner membrane component J170_01718 PF00528 Binding-protein-dependent transport system inner membrane component J170_01719 PF12849 PBP superfamily domain J170_01720 PF12849 PBP superfamily domain J170_01723 PF00484 Carbonic anhydrase J170_01724 PF01740 STAS domain J170_01724 PF00916 Sulfate permease family J170_01725 PF00730 HhH-GPD superfamily base excision DNA repair protein J170_01725 PF10576 Iron-sulfur binding domain of endonuclease III J170_01725 PF00633 Helix-hairpin-helix motif J170_01727 PF00378 Enoyl-CoA hydratase/isomerase J170_01728 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J170_01728 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J170_01729 PF00293 NUDIX domain J170_01730 PF00581 Rhodanese-like domain J170_01737 PF10672 S-adenosylmethionine-dependent methyltransferase J170_01737 PF01170 Putative RNA methylase family UPF0020 J170_01737 PF02926 THUMP domain J170_01738 PF01513 ATP-NAD kinase J170_01742 PF08411 Exonuclease C-terminal J170_01742 PF00929 Exonuclease J170_01743 PF01494 FAD binding domain J170_01744 PF00266 Aminotransferase class-V J170_01746 PF06052 3-hydroxyanthranilic acid dioxygenase J170_01747 PF00484 Carbonic anhydrase J170_01756 PF00072 Response regulator receiver domain J170_01756 PF00196 Bacterial regulatory proteins, luxR family J170_01759 PF04299 Putative FMN-binding domain J170_01763 PF01336 OB-fold nucleic acid binding domain J170_01763 PF00152 tRNA synthetases class II (D, K and N) J170_01764 PF01521 Iron-sulphur cluster biosynthesis J170_01765 PF01250 Ribosomal protein S6 J170_01766 PF01084 Ribosomal protein S18 J170_01767 PF03948 Ribosomal protein L9, C-terminal domain J170_01767 PF01281 Ribosomal protein L9, N-terminal domain J170_01768 PF02463 RecF/RecN/SMC N terminal domain J170_01769 PF04354 ZipA, C-terminal FtsZ-binding domain J170_01771 PF00155 Aminotransferase class I and II J170_01772 PF12826 Helix-hairpin-helix motif J170_01772 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J170_01772 PF03120 NAD-dependent DNA ligase OB-fold domain J170_01772 PF01653 NAD-dependent DNA ligase adenylation domain J170_01772 PF00533 BRCA1 C Terminus (BRCT) domain J170_01773 PF00152 tRNA synthetases class II (D, K and N) J170_01775 PF01008 Initiation factor 2 subunit family J170_01776 PF03989 DNA gyrase C-terminal domain, beta-propeller J170_01776 PF00521 DNA gyrase/topoisomerase IV, subunit A J170_01777 PF13360 PQQ-like domain J170_01779 PF01175 Urocanase Rossmann-like domain J170_01779 PF17392 Urocanase C-terminal domain J170_01779 PF17391 Urocanase N-terminal domain J170_01781 PF00221 Aromatic amino acid lyase J170_01782 PF07969 Amidohydrolase family J170_01784 PF07702 UTRA domain J170_01784 PF00392 Bacterial regulatory proteins, gntR family J170_01790 PF01794 Ferric reductase like transmembrane component J170_01791 PF00174 Oxidoreductase molybdopterin binding domain J170_01792 PF00266 Aminotransferase class-V J170_01793 PF01842 ACT domain J170_01793 PF01817 Chorismate mutase type II J170_01793 PF00800 Prephenate dehydratase J170_01794 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J170_01796 PF03544 Gram-negative bacterial TonB protein C-terminal J170_01797 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J170_01797 PF02403 Seryl-tRNA synthetase N-terminal domain J170_01798 PF02525 Flavodoxin-like fold J170_01799 PF03466 LysR substrate binding domain J170_01799 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_01804 PF01527 Transposase J170_01805 PF00665 Integrase core domain J170_01805 PF13276 HTH-like domain J170_01805 PF13333 Integrase core domain J170_01810 PF02203 Tar ligand binding domain homologue J170_01810 PF00672 HAMP domain J170_01810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_01813 PF13188 PAS domain J170_01813 PF08448 PAS fold J170_01813 PF00512 His Kinase A (phospho-acceptor) domain J170_01813 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_01813 PF00072 Response regulator receiver domain J170_01814 PF00072 Response regulator receiver domain J170_01814 PF00486 Transcriptional regulatory protein, C terminal J170_01815 PF06745 KaiC J170_01816 PF00072 Response regulator receiver domain J170_01816 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_01816 PF13426 PAS domain J170_01818 PF03918 Cytochrome C biogenesis protein J170_01819 PF08534 Redoxin J170_01820 PF01578 Cytochrome C assembly protein J170_01820 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J170_01821 PF03100 CcmE J170_01823 PF01578 Cytochrome C assembly protein J170_01824 PF00082 Subtilase family J170_01826 PF04542 Sigma-70 region 2 J170_01826 PF08281 Sigma-70, region 4 J170_01829 PF00034 Cytochrome c J170_01832 PF05523 WxcM-like, C-terminal J170_01836 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J170_01837 PF01943 Polysaccharide biosynthesis protein J170_01838 PF00535 Glycosyl transferase family 2 J170_01841 PF08241 Methyltransferase domain J170_01845 PF00534 Glycosyl transferases group 1 J170_01845 PF13579 Glycosyl transferase 4-like domain J170_01848 PF00005 ABC transporter J170_01849 PF00664 ABC transporter transmembrane region J170_01849 PF00005 ABC transporter J170_01850 PF07690 Major Facilitator Superfamily J170_01851 PF00296 Luciferase-like monooxygenase J170_01854 PF03471 Transporter associated domain J170_01854 PF00571 CBS domain J170_01854 PF01595 Cyclin M transmembrane N-terminal domain J170_01856 PF01384 Phosphate transporter family J170_01859 PF01751 Toprim domain J170_01859 PF00204 DNA gyrase B J170_01859 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_01859 PF00986 DNA gyrase B subunit, carboxyl terminus J170_01861 PF00117 Glutamine amidotransferase class-I J170_01861 PF06418 CTP synthase N-terminus J170_01862 PF00793 DAHP synthetase I family J170_01864 PF03952 Enolase, N-terminal domain J170_01864 PF00113 Enolase, C-terminal TIM barrel domain J170_01865 PF04977 Septum formation initiator J170_01866 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J170_01867 PF02542 YgbB family J170_01868 PF01142 tRNA pseudouridine synthase D (TruD) J170_01869 PF01713 Smr domain J170_01870 PF01975 Survival protein SurE J170_01872 PF09335 SNARE associated Golgi protein J170_01873 PF01551 Peptidase family M23 J170_01873 PF01476 LysM domain J170_01875 PF04430 Protein of unknown function (DUF498/DUF598) J170_01876 PF01985 CRS1 / YhbY (CRM) domain J170_01877 PF01728 FtsJ-like methyltransferase J170_01878 PF06480 FtsH Extracellular J170_01878 PF01434 Peptidase family M41 J170_01878 PF00004 ATPase family associated with various cellular activities (AAA) J170_01878 PF17862 AAA+ lid domain J170_01879 PF00809 Pterin binding enzyme J170_01881 PF17209 Hfq protein J170_01882 PF13167 GTP-binding GTPase N-terminal J170_01882 PF16360 GTP-binding GTPase Middle Region J170_01882 PF01926 50S ribosome-binding GTPase J170_01883 PF02464 Competence-damaged protein J170_01884 PF03109 ABC1 family J170_01885 PF00717 Peptidase S24-like J170_01885 PF01726 LexA DNA binding domain J170_01886 PF00154 recA bacterial DNA recombination protein J170_01887 PF02631 RecX family J170_01888 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J170_01888 PF02272 DHHA1 domain J170_01888 PF01411 tRNA synthetases class II (A) J170_01889 PF02599 Global regulator protein family J170_01891 PF13426 PAS domain J170_01891 PF08447 PAS fold J170_01891 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_01892 PF17954 Quercetinase C-terminal cupin domain J170_01892 PF02678 Pirin J170_01893 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_01893 PF03466 LysR substrate binding domain J170_01898 PF08543 Phosphomethylpyrimidine kinase J170_01898 PF02581 Thiamine monophosphate synthase J170_01901 PF02562 PhoH-like protein J170_01901 PF13638 PIN domain J170_01902 PF00578 AhpC/TSA family J170_01905 PF00701 Dihydrodipicolinate synthetase family J170_01907 PF11953 Domain of unknown function (DUF3470) J170_01907 PF00037 4Fe-4S binding domain J170_01908 PF05035 2-keto-3-deoxy-galactonokinase J170_01909 PF08450 SMP-30/Gluconolactonase/LRE-like region J170_01910 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J170_01910 PF13378 Enolase C-terminal domain-like J170_01911 PF01081 KDPG and KHG aldolase J170_01913 PF03466 LysR substrate binding domain J170_01913 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_01916 PF03442 Carbohydrate binding domain X2 J170_01916 PF00942 Cellulose binding domain J170_01919 PF16338 Domain of unknown function (DUF4968) J170_01919 PF17137 Domain of unknown function (DUF5110) J170_01919 PF01055 Glycosyl hydrolases family 31 J170_01921 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J170_01921 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J170_01923 PF00083 Sugar (and other) transporter J170_01926 PF01520 N-acetylmuramoyl-L-alanine amidase J170_01927 PF02649 Type I GTP cyclohydrolase folE2 J170_01931 PF12626 Polymerase A arginine-rich C-terminus J170_01931 PF01743 Poly A polymerase head domain J170_01931 PF12627 Probable RNA and SrmB- binding site of polymerase A J170_01932 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J170_01933 PF02548 Ketopantoate hydroxymethyltransferase J170_01934 PF02569 Pantoate-beta-alanine ligase J170_01935 PF02261 Aspartate decarboxylase J170_01936 PF00342 Phosphoglucose isomerase J170_01940 PF14310 Fibronectin type III-like domain J170_01940 PF00933 Glycosyl hydrolase family 3 N terminal domain J170_01940 PF01915 Glycosyl hydrolase family 3 C-terminal domain J170_01941 PF00474 Sodium:solute symporter family J170_01942 PF00563 EAL domain J170_01942 PF00990 Diguanylate cyclase, GGDEF domain J170_01942 PF01590 GAF domain J170_01942 PF00360 Phytochrome region J170_01943 PF00150 Cellulase (glycosyl hydrolase family 5) J170_01943 PF02013 Cellulose or protein binding domain J170_01944 PF00072 Response regulator receiver domain J170_01946 PF04551 GcpE protein J170_01947 PF01569 PAP2 superfamily J170_01948 PF07690 Major Facilitator Superfamily J170_01949 PF01177 Asp/Glu/Hydantoin racemase J170_01950 PF00892 EamA-like transporter family J170_01951 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J170_01951 PF01565 FAD binding domain J170_01952 PF01180 Dihydroorotate dehydrogenase J170_01955 PF00171 Aldehyde dehydrogenase family J170_01958 PF00535 Glycosyl transferase family 2 J170_01959 PF01522 Polysaccharide deacetylase J170_01959 PF14883 Hypothetical glycosyl hydrolase family 13 J170_01961 PF08479 POTRA domain, ShlB-type J170_01961 PF17287 POTRA domain J170_01961 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB J170_01962 PF05594 Haemagluttinin repeat J170_01962 PF13332 Hemagglutinin repeat J170_01962 PF04829 Pre-toxin domain with VENN motif J170_01963 PF05594 Haemagluttinin repeat J170_01963 PF04829 Pre-toxin domain with VENN motif J170_01963 PF13332 Hemagglutinin repeat J170_01965 PF13332 Hemagglutinin repeat J170_01965 PF05860 haemagglutination activity domain J170_01965 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain J170_01965 PF13018 Extended Signal Peptide of Type V secretion system J170_01965 PF05594 Haemagluttinin repeat J170_01967 PF01842 ACT domain J170_01967 PF13840 ACT domain J170_01967 PF03447 Homoserine dehydrogenase, NAD binding domain J170_01967 PF00696 Amino acid kinase family J170_01967 PF00742 Homoserine dehydrogenase J170_01968 PF08544 GHMP kinases C terminal J170_01968 PF00288 GHMP kinases N terminal domain J170_01970 PF14821 Threonine synthase N terminus J170_01970 PF00291 Pyridoxal-phosphate dependent enzyme J170_01972 PF13545 Crp-like helix-turn-helix domain J170_01972 PF00027 Cyclic nucleotide-binding domain J170_01973 PF13393 Histidyl-tRNA synthetase J170_01973 PF03129 Anticodon binding domain J170_01975 PF01634 ATP phosphoribosyltransferase J170_01975 PF08029 HisG, C-terminal domain J170_01976 PF00815 Histidinol dehydrogenase J170_01977 PF00155 Aminotransferase class I and II J170_01978 PF00475 Imidazoleglycerol-phosphate dehydratase J170_01979 PF00117 Glutamine amidotransferase class-I J170_01980 PF00977 Histidine biosynthesis protein J170_01981 PF00977 Histidine biosynthesis protein J170_01982 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J170_01982 PF01502 Phosphoribosyl-AMP cyclohydrolase J170_01986 PF03079 ARD/ARD' family J170_01987 PF00596 Class II Aldolase and Adducin N-terminal domain J170_01988 PF13520 Amino acid permease J170_01989 PF13520 Amino acid permease J170_01991 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J170_01991 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J170_01991 PF01842 ACT domain J170_01992 PF01565 FAD binding domain J170_01992 PF02913 FAD linked oxidases, C-terminal domain J170_01996 PF08207 Elongation factor P (EF-P) KOW-like domain J170_01996 PF09285 Elongation factor P, C-terminal J170_01996 PF01132 Elongation factor P (EF-P) OB domain J170_01997 PF00106 short chain dehydrogenase J170_01998 PF00682 HMGL-like J170_02000 PF00378 Enoyl-CoA hydratase/isomerase J170_02002 PF07670 Nucleoside recognition J170_02002 PF02421 Ferrous iron transport protein B J170_02002 PF07664 Ferrous iron transport protein B C terminus J170_02005 PF00155 Aminotransferase class I and II J170_02006 PF03475 3-alpha domain J170_02006 PF03473 MOSC domain J170_02007 PF01113 Dihydrodipicolinate reductase, N-terminus J170_02007 PF05173 Dihydrodipicolinate reductase, C-terminus J170_02008 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J170_02008 PF00117 Glutamine amidotransferase class-I J170_02010 PF02142 MGS-like domain J170_02010 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J170_02010 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J170_02011 PF01272 Transcription elongation factor, GreA/GreB, C-term J170_02011 PF03449 Transcription elongation factor, N-terminal J170_02013 PF02272 DHHA1 domain J170_02013 PF01368 DHH family J170_02013 PF17768 RecJ OB domain J170_02021 PF04397 LytTr DNA-binding domain J170_02021 PF00072 Response regulator receiver domain J170_02022 PF03462 PCRF domain J170_02022 PF00472 RF-1 domain J170_02023 PF01336 OB-fold nucleic acid binding domain J170_02023 PF00152 tRNA synthetases class II (D, K and N) J170_02024 PF00072 Response regulator receiver domain J170_02025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_02025 PF00512 His Kinase A (phospho-acceptor) domain J170_02025 PF01627 Hpt domain J170_02025 PF00072 Response regulator receiver domain J170_02026 PF00378 Enoyl-CoA hydratase/isomerase J170_02027 PF13193 AMP-binding enzyme C-terminal domain J170_02027 PF00501 AMP-binding enzyme J170_02029 PF00694 Aconitase C-terminal domain J170_02029 PF00330 Aconitase family (aconitate hydratase) J170_02032 PF00330 Aconitase family (aconitate hydratase) J170_02032 PF06434 Aconitate hydratase 2 N-terminus J170_02032 PF11791 Aconitate B N-terminal domain J170_02033 PF00561 alpha/beta hydrolase fold J170_02034 PF00990 Diguanylate cyclase, GGDEF domain J170_02034 PF03707 Bacterial signalling protein N terminal repeat J170_02034 PF00563 EAL domain J170_02035 PF01339 CheB methylesterase J170_02035 PF00072 Response regulator receiver domain J170_02036 PF03975 CheD chemotactic sensory transduction J170_02037 PF03705 CheR methyltransferase, all-alpha domain J170_02037 PF01739 CheR methyltransferase, SAM binding domain J170_02038 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_02038 PF02203 Tar ligand binding domain homologue J170_02038 PF00672 HAMP domain J170_02039 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_02039 PF02203 Tar ligand binding domain homologue J170_02039 PF00672 HAMP domain J170_02040 PF02203 Tar ligand binding domain homologue J170_02040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_02040 PF00672 HAMP domain J170_02041 PF02203 Tar ligand binding domain homologue J170_02041 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_02041 PF00672 HAMP domain J170_02042 PF00672 HAMP domain J170_02042 PF02203 Tar ligand binding domain homologue J170_02042 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_02043 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_02043 PF00672 HAMP domain J170_02044 PF02203 Tar ligand binding domain homologue J170_02044 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_02044 PF00672 HAMP domain J170_02046 PF00672 HAMP domain J170_02046 PF02203 Tar ligand binding domain homologue J170_02046 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_02047 PF00672 HAMP domain J170_02047 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_02047 PF17200 Single Cache domain 2 J170_02047 PF00672 HAMP domain J170_02047 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_02047 PF17200 Single Cache domain 2 J170_02049 PF00672 HAMP domain J170_02049 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_02049 PF02203 Tar ligand binding domain homologue J170_02050 PF01627 Hpt domain J170_02050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_02050 PF02895 Signal transducing histidine kinase, homodimeric domain J170_02050 PF09078 CheY binding J170_02050 PF01584 CheW-like domain J170_02051 PF00072 Response regulator receiver domain J170_02053 PF01584 CheW-like domain J170_02054 PF13614 AAA domain J170_02055 PF13677 Membrane MotB of proton-channel complex MotA/MotB J170_02055 PF00691 OmpA family J170_02056 PF01618 MotA/TolQ/ExbB proton channel family J170_02059 PF03793 PASTA domain J170_02059 PF00069 Protein kinase domain J170_02069 PF01527 Transposase J170_02075 PF13186 Iron-sulfur cluster-binding domain J170_02075 PF04055 Radical SAM superfamily J170_02078 PF01584 CheW-like domain J170_02078 PF02895 Signal transducing histidine kinase, homodimeric domain J170_02078 PF01627 Hpt domain J170_02078 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_02078 PF07194 P2 response regulator binding domain J170_02079 PF04344 Chemotaxis phosphatase, CheZ J170_02080 PF00072 Response regulator receiver domain J170_02081 PF04542 Sigma-70 region 2 J170_02081 PF04539 Sigma-70 region 3 J170_02081 PF04545 Sigma-70, region 4 J170_02082 PF10609 NUBPL iron-transfer P-loop NTPase J170_02083 PF00448 SRP54-type protein, GTPase domain J170_02084 PF00771 FHIPEP family J170_02085 PF01312 FlhB HrpN YscU SpaS Family J170_02086 PF00990 Diguanylate cyclase, GGDEF domain J170_02086 PF00563 EAL domain J170_02086 PF03707 Bacterial signalling protein N terminal repeat J170_02087 PF00990 Diguanylate cyclase, GGDEF domain J170_02087 PF13188 PAS domain J170_02087 PF00563 EAL domain J170_02087 PF03707 Bacterial signalling protein N terminal repeat J170_02088 PF00563 EAL domain J170_02088 PF00990 Diguanylate cyclase, GGDEF domain J170_02088 PF13188 PAS domain J170_02088 PF03707 Bacterial signalling protein N terminal repeat J170_02089 PF01311 Bacterial export proteins, family 1 J170_02090 PF01313 Bacterial export proteins, family 3 J170_02092 PF00813 FliP family J170_02093 PF04347 Flagellar biosynthesis protein, FliO J170_02094 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J170_02095 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J170_02095 PF02154 Flagellar motor switch protein FliM J170_02099 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J170_02099 PF18269 T3SS EscN ATPase C-terminal domain J170_02101 PF01706 FliG C-terminal domain J170_02101 PF14841 FliG middle domain J170_02101 PF14842 FliG N-terminal domain J170_02102 PF01514 Secretory protein of YscJ/FliF family J170_02102 PF08345 Flagellar M-ring protein C-terminal J170_02103 PF02049 Flagellar hook-basal body complex protein FliE J170_02104 PF00535 Glycosyl transferase family 2 J170_02104 PF00534 Glycosyl transferases group 1 J170_02112 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J170_02112 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J170_02114 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J170_02115 PF00158 Sigma-54 interaction domain J170_02115 PF02954 Bacterial regulatory protein, Fis family J170_02115 PF00072 Response regulator receiver domain J170_02116 PF01339 CheB methylesterase J170_02116 PF00072 Response regulator receiver domain J170_02117 PF04552 Sigma-54, DNA binding domain J170_02117 PF04963 Sigma-54 factor, core binding domain J170_02117 PF00309 Sigma-54 factor, Activator interacting domain (AID) J170_02118 PF00196 Bacterial regulatory proteins, luxR family J170_02118 PF00072 Response regulator receiver domain J170_02121 PF02561 Flagellar protein FliS J170_02122 PF07195 Flagellar hook-associated protein 2 C-terminus J170_02122 PF07196 Flagellin hook IN motif J170_02122 PF02465 Flagellar hook-associated protein 2 N-terminus J170_02123 PF00700 Bacterial flagellin C-terminal helical region J170_02123 PF00669 Bacterial flagellin N-terminal helical region J170_02124 PF00700 Bacterial flagellin C-terminal helical region J170_02124 PF00669 Bacterial flagellin N-terminal helical region J170_02125 PF07196 Flagellin hook IN motif J170_02125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J170_02126 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J170_02126 PF10135 Rod binding protein J170_02127 PF02119 Flagellar P-ring protein J170_02128 PF02107 Flagellar L-ring protein J170_02129 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J170_02129 PF00460 Flagella basal body rod protein J170_02130 PF00460 Flagella basal body rod protein J170_02130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J170_02131 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J170_02131 PF00460 Flagella basal body rod protein J170_02131 PF07559 Flagellar basal body protein FlaE J170_02132 PF03963 Flagellar hook capping protein - N-terminal region J170_02133 PF00460 Flagella basal body rod protein J170_02133 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J170_02135 PF01584 CheW-like domain J170_02135 PF00072 Response regulator receiver domain J170_02139 PF00512 His Kinase A (phospho-acceptor) domain J170_02139 PF00989 PAS fold J170_02139 PF13188 PAS domain J170_02139 PF13426 PAS domain J170_02139 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_02140 PF00990 Diguanylate cyclase, GGDEF domain J170_02140 PF00563 EAL domain J170_02140 PF03707 Bacterial signalling protein N terminal repeat J170_02141 PF07730 Histidine kinase J170_02141 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_02142 PF00990 Diguanylate cyclase, GGDEF domain J170_02142 PF00563 EAL domain J170_02142 PF03707 Bacterial signalling protein N terminal repeat J170_02144 PF00672 HAMP domain J170_02144 PF12729 Four helix bundle sensory module for signal transduction J170_02144 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_02145 PF04356 Protein of unknown function (DUF489) J170_02147 PF00293 NUDIX domain J170_02148 PF02617 ATP-dependent Clp protease adaptor protein ClpS J170_02149 PF07724 AAA domain (Cdc48 subfamily) J170_02149 PF17871 AAA lid domain J170_02149 PF00004 ATPase family associated with various cellular activities (AAA) J170_02149 PF02861 Clp amino terminal domain, pathogenicity island component J170_02149 PF10431 C-terminal, D2-small domain, of ClpB protein J170_02150 PF01176 Translation initiation factor 1A / IF-1 J170_02151 PF03588 Leucyl/phenylalanyl-tRNA protein transferase J170_02153 PF07992 Pyridine nucleotide-disulphide oxidoreductase J170_02154 PF01580 FtsK/SpoIIIE family J170_02154 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J170_02154 PF17854 FtsK alpha domain J170_02154 PF09397 Ftsk gamma domain J170_02156 PF03548 Outer membrane lipoprotein carrier protein LolA J170_02158 PF12002 MgsA AAA+ ATPase C terminal J170_02158 PF00004 ATPase family associated with various cellular activities (AAA) J170_02158 PF16193 AAA C-terminal domain J170_02160 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J170_02162 PF00108 Thiolase, N-terminal domain J170_02162 PF02803 Thiolase, C-terminal domain J170_02163 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J170_02163 PF00378 Enoyl-CoA hydratase/isomerase J170_02163 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J170_02165 PF00334 Nucleoside diphosphate kinase J170_02166 PF04055 Radical SAM superfamily J170_02168 PF13464 Domain of unknown function (DUF4115) J170_02170 PF13360 PQQ-like domain J170_02170 PF01011 PQQ enzyme repeat J170_02171 PF01926 50S ribosome-binding GTPase J170_02171 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J170_02172 PF03453 MoeA N-terminal region (domain I and II) J170_02172 PF03454 MoeA C-terminal region (domain IV) J170_02172 PF00994 Probable molybdopterin binding domain J170_02173 PF00899 ThiF family J170_02178 PF00107 Zinc-binding dehydrogenase J170_02178 PF13823 Alcohol dehydrogenase GroES-associated J170_02178 PF08240 Alcohol dehydrogenase GroES-like domain J170_02180 PF03372 Endonuclease/Exonuclease/phosphatase family J170_02182 PF03453 MoeA N-terminal region (domain I and II) J170_02182 PF03454 MoeA C-terminal region (domain IV) J170_02182 PF00994 Probable molybdopterin binding domain J170_02183 PF12804 MobA-like NTP transferase domain J170_02185 PF00561 alpha/beta hydrolase fold J170_02186 PF01566 Natural resistance-associated macrophage protein J170_02187 PF02742 Iron dependent repressor, metal binding and dimerisation domain J170_02187 PF01325 Iron dependent repressor, N-terminal DNA binding domain J170_02188 PF14437 MafB19-like deaminase J170_02189 PF00929 Exonuclease J170_02190 PF00924 Mechanosensitive ion channel J170_02190 PF05552 Conserved TM helix J170_02191 PF00391 PEP-utilising enzyme, mobile domain J170_02191 PF02896 PEP-utilising enzyme, TIM barrel domain J170_02191 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J170_02192 PF03618 Kinase/pyrophosphorylase J170_02196 PF01066 CDP-alcohol phosphatidyltransferase J170_02198 PF00561 alpha/beta hydrolase fold J170_02201 PF00355 Rieske [2Fe-2S] domain J170_02201 PF01266 FAD dependent oxidoreductase J170_02203 PF09371 Tex-like protein N-terminal domain J170_02203 PF00575 S1 RNA binding domain J170_02203 PF17674 HHH domain J170_02203 PF16921 Tex protein YqgF-like domain J170_02204 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_02204 PF00072 Response regulator receiver domain J170_02204 PF09308 LuxQ, periplasmic J170_02204 PF00512 His Kinase A (phospho-acceptor) domain J170_02212 PF00034 Cytochrome c J170_02214 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J170_02215 PF00873 AcrB/AcrD/AcrF family J170_02216 PF00873 AcrB/AcrD/AcrF family J170_02217 PF01081 KDPG and KHG aldolase J170_02218 PF00920 Dehydratase family J170_02219 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J170_02220 PF02685 Glucokinase J170_02221 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J170_02221 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J170_02222 PF00005 ABC transporter J170_02222 PF17912 MalK OB fold domain J170_02225 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J170_02226 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J170_02227 PF02910 Fumarate reductase flavoprotein C-term J170_02227 PF00890 FAD binding domain J170_02229 PF13085 2Fe-2S iron-sulfur cluster binding domain J170_02230 PF03937 Flavinator of succinate dehydrogenase J170_02232 PF12704 MacB-like periplasmic core domain J170_02232 PF02687 FtsX-like permease family J170_02233 PF00005 ABC transporter J170_02235 PF03772 Competence protein J170_02235 PF00753 Metallo-beta-lactamase superfamily J170_02236 PF01618 MotA/TolQ/ExbB proton channel family J170_02238 PF00664 ABC transporter transmembrane region J170_02238 PF00005 ABC transporter J170_02239 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J170_02240 PF02348 Cytidylyltransferase J170_02241 PF01451 Low molecular weight phosphotyrosine protein phosphatase J170_02243 PF08459 UvrC Helix-hairpin-helix N-terminal J170_02243 PF02151 UvrB/uvrC motif J170_02243 PF01541 GIY-YIG catalytic domain J170_02244 PF01066 CDP-alcohol phosphatidyltransferase J170_02248 PF00501 AMP-binding enzyme J170_02248 PF13193 AMP-binding enzyme C-terminal domain J170_02248 PF00668 Condensation domain J170_02248 PF00550 Phosphopantetheine attachment site J170_02249 PF00501 AMP-binding enzyme J170_02249 PF00975 Thioesterase domain J170_02249 PF00668 Condensation domain J170_02249 PF13193 AMP-binding enzyme C-terminal domain J170_02249 PF00550 Phosphopantetheine attachment site J170_02251 PF01527 Transposase J170_02253 PF01527 Transposase J170_02254 PF00589 Phage integrase family J170_02256 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J170_02256 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J170_02256 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J170_02258 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J170_02261 PF00196 Bacterial regulatory proteins, luxR family J170_02261 PF00072 Response regulator receiver domain J170_02262 PF12111 Polyribonucleotide phosphorylase C terminal J170_02262 PF10150 Ribonuclease E/G family J170_02262 PF00575 S1 RNA binding domain J170_02263 PF00849 RNA pseudouridylate synthase J170_02263 PF01479 S4 domain J170_02264 PF11737 Protein of unknown function (DUF3300) J170_02265 PF02535 ZIP Zinc transporter J170_02267 PF01329 Pterin 4 alpha carbinolamine dehydratase J170_02268 PF01106 NifU-like domain J170_02279 PF00106 short chain dehydrogenase J170_02284 PF01527 Transposase J170_02285 PF01494 FAD binding domain J170_02286 PF09335 SNARE associated Golgi protein J170_02288 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J170_02289 PF07995 Glucose / Sorbosone dehydrogenase J170_02291 PF00144 Beta-lactamase J170_02292 PF04397 LytTr DNA-binding domain J170_02292 PF00072 Response regulator receiver domain J170_02293 PF06580 Histidine kinase J170_02293 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_02293 PF07694 5TMR of 5TMR-LYT J170_02295 PF03797 Autotransporter beta-domain J170_02295 PF00082 Subtilase family J170_02296 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J170_02297 PF00873 AcrB/AcrD/AcrF family J170_02299 PF00512 His Kinase A (phospho-acceptor) domain J170_02299 PF00072 Response regulator receiver domain J170_02299 PF13426 PAS domain J170_02299 PF08448 PAS fold J170_02299 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_02300 PF00072 Response regulator receiver domain J170_02300 PF00196 Bacterial regulatory proteins, luxR family J170_02301 PF12951 Passenger-associated-transport-repeat J170_02301 PF12951 Passenger-associated-transport-repeat J170_02302 PF08447 PAS fold J170_02302 PF00990 Diguanylate cyclase, GGDEF domain J170_02302 PF00563 EAL domain J170_02302 PF08448 PAS fold J170_02305 PF05974 Domain of unknown function (DUF892) J170_02307 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J170_02309 PF14824 Sirohaem biosynthesis protein central J170_02309 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J170_02309 PF10414 Sirohaem synthase dimerisation region J170_02312 PF05977 Transmembrane secretion effector J170_02313 PF07969 Amidohydrolase family J170_02315 PF00857 Isochorismatase family J170_02318 PF00196 Bacterial regulatory proteins, luxR family J170_02318 PF00072 Response regulator receiver domain J170_02321 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_02321 PF03466 LysR substrate binding domain J170_02322 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus J170_02322 PF00361 Proton-conducting membrane transporter J170_02322 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J170_02323 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) J170_02325 PF01527 Transposase J170_02326 PF01381 Helix-turn-helix J170_02327 PF05284 Protein of unknown function (DUF736) J170_02328 PF04002 RadC-like JAB domain J170_02333 PF13356 Arm DNA-binding domain J170_02333 PF00589 Phage integrase family J170_02336 PF07715 TonB-dependent Receptor Plug Domain J170_02336 PF00593 TonB dependent receptor J170_02340 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin J170_02345 PF07715 TonB-dependent Receptor Plug Domain J170_02345 PF00593 TonB dependent receptor J170_02348 PF10947 Protein of unknown function (DUF2628) J170_02350 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) J170_02350 PF00722 Glycosyl hydrolases family 16 J170_02355 PF00664 ABC transporter transmembrane region J170_02355 PF03412 Peptidase C39 family J170_02355 PF00005 ABC transporter J170_02357 PF13614 AAA domain J170_02365 PF01751 Toprim domain J170_02365 PF01131 DNA topoisomerase J170_02366 PF01751 Toprim domain J170_02366 PF01131 DNA topoisomerase J170_02367 PF00145 C-5 cytosine-specific DNA methylase J170_02379 PF06250 YhcG PDDEXK nuclease domain J170_02379 PF17761 DUF1016 N-terminal domain J170_02380 PF01527 Transposase J170_02382 PF00892 EamA-like transporter family J170_02383 PF00892 EamA-like transporter family J170_02385 PF02525 Flavodoxin-like fold J170_02386 PF02798 Glutathione S-transferase, N-terminal domain J170_02386 PF00043 Glutathione S-transferase, C-terminal domain J170_02387 PF05544 Proline racemase J170_02388 PF03358 NADPH-dependent FMN reductase J170_02390 PF07690 Major Facilitator Superfamily J170_02391 PF02311 AraC-like ligand binding domain J170_02391 PF12833 Helix-turn-helix domain J170_02421 PF12462 DNA helicase IV / RNA helicase N terminal J170_02421 PF00580 UvrD/REP helicase N-terminal domain J170_02421 PF13361 UvrD-like helicase C-terminal domain J170_02436 PF03466 LysR substrate binding domain J170_02436 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_02437 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J170_02437 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J170_02438 PF03401 Tripartite tricarboxylate transporter family receptor J170_02442 PF04002 RadC-like JAB domain J170_02449 PF00589 Phage integrase family J170_02449 PF13356 Arm DNA-binding domain J170_02450 PF00117 Glutamine amidotransferase class-I J170_02450 PF00958 GMP synthase C terminal domain J170_02450 PF02540 NAD synthase J170_02451 PF00571 CBS domain J170_02451 PF00478 IMP dehydrogenase / GMP reductase domain J170_02452 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J170_02452 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J170_02454 PF02254 TrkA-N domain J170_02454 PF00999 Sodium/hydrogen exchanger family J170_02455 PF00483 Nucleotidyl transferase J170_02456 PF02719 Polysaccharide biosynthesis protein J170_02457 PF00953 Glycosyl transferase family 4 J170_02458 PF18073 Rubredoxin metal binding domain J170_02460 PF00216 Bacterial DNA-binding protein J170_02461 PF00575 S1 RNA binding domain J170_02462 PF02224 Cytidylate kinase J170_02463 PF00444 Ribosomal protein L36 J170_02466 PF04371 Porphyromonas-type peptidyl-arginine deiminase J170_02467 PF00795 Carbon-nitrogen hydrolase J170_02472 PF00528 Binding-protein-dependent transport system inner membrane component J170_02473 PF00528 Binding-protein-dependent transport system inner membrane component J170_02477 PF00356 Bacterial regulatory proteins, lacI family J170_02479 PF03795 YCII-related domain J170_02480 PF02616 Segregation and condensation protein ScpA J170_02481 PF04079 Segregation and condensation complex subunit ScpB J170_02482 PF00849 RNA pseudouridylate synthase J170_02482 PF01479 S4 domain J170_02485 PF00795 Carbon-nitrogen hydrolase J170_02486 PF00155 Aminotransferase class I and II J170_02487 PF00005 ABC transporter J170_02488 PF03379 CcmB protein J170_02489 PF01578 Cytochrome C assembly protein J170_02491 PF03100 CcmE J170_02492 PF01578 Cytochrome C assembly protein J170_02492 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J170_02493 PF08534 Redoxin J170_02494 PF03918 Cytochrome C biogenesis protein J170_02496 PF00561 alpha/beta hydrolase fold J170_02497 PF00313 'Cold-shock' DNA-binding domain J170_02498 PF00664 ABC transporter transmembrane region J170_02498 PF00005 ABC transporter J170_02499 PF00664 ABC transporter transmembrane region J170_02499 PF00005 ABC transporter J170_02500 PF01654 Cytochrome bd terminal oxidase subunit I J170_02501 PF02322 Cytochrome bd terminal oxidase subunit II J170_02505 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J170_02505 PF02129 X-Pro dipeptidyl-peptidase (S15 family) J170_02506 PF00171 Aldehyde dehydrogenase family J170_02507 PF01472 PUA domain J170_02507 PF00696 Amino acid kinase family J170_02509 PF00206 Lyase J170_02510 PF01118 Semialdehyde dehydrogenase, NAD binding domain J170_02512 PF00696 Amino acid kinase family J170_02512 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase J170_02515 PF00764 Arginosuccinate synthase J170_02516 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J170_02516 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J170_02518 PF09190 DALR domain J170_02518 PF01406 tRNA synthetases class I (C) catalytic domain J170_02519 PF02657 Fe-S metabolism associated domain J170_02521 PF01258 Prokaryotic dksA/traR C4-type zinc finger J170_02522 PF01809 Putative membrane protein insertion efficiency factor J170_02523 PF01979 Amidohydrolase family J170_02524 PF08460 Bacterial SH3 domain J170_02524 PF01551 Peptidase family M23 J170_02527 PF06751 Ethanolamine ammonia lyase large subunit (EutB) J170_02528 PF05985 Ethanolamine ammonia-lyase light chain (EutC) J170_02530 PF00753 Metallo-beta-lactamase superfamily J170_02534 PF01527 Transposase J170_02537 PF00295 Glycosyl hydrolases family 28 J170_02539 PF13419 Haloacid dehalogenase-like hydrolase J170_02541 PF01979 Amidohydrolase family J170_02543 PF01132 Elongation factor P (EF-P) OB domain J170_02543 PF08207 Elongation factor P (EF-P) KOW-like domain J170_02543 PF09285 Elongation factor P, C-terminal J170_02544 PF04055 Radical SAM superfamily J170_02545 PF13188 PAS domain J170_02545 PF00563 EAL domain J170_02545 PF00990 Diguanylate cyclase, GGDEF domain J170_02545 PF03707 Bacterial signalling protein N terminal repeat J170_02547 PF00588 SpoU rRNA Methylase family J170_02548 PF00459 Inositol monophosphatase family J170_02549 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J170_02549 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J170_02550 PF00545 ribonuclease J170_02553 PF00270 DEAD/DEAH box helicase J170_02553 PF03880 DbpA RNA binding domain J170_02553 PF00271 Helicase conserved C-terminal domain J170_02554 PF00156 Phosphoribosyl transferase domain J170_02555 PF02696 Uncharacterized ACR, YdiU/UPF0061 family J170_02556 PF00135 Carboxylesterase family J170_02557 PF02798 Glutathione S-transferase, N-terminal domain J170_02557 PF14497 Glutathione S-transferase, C-terminal domain J170_02558 PF00313 'Cold-shock' DNA-binding domain J170_02559 PF07152 YaeQ protein J170_02561 PF00563 EAL domain J170_02561 PF00990 Diguanylate cyclase, GGDEF domain J170_02561 PF00072 Response regulator receiver domain J170_02562 PF01435 Peptidase family M48 J170_02563 PF00749 tRNA synthetases class I (E and Q), catalytic domain J170_02564 PF00106 short chain dehydrogenase J170_02565 PF05233 PHB accumulation regulatory domain J170_02565 PF07879 PHB/PHA accumulation regulator DNA-binding domain J170_02568 PF08676 MutL C terminal dimerisation domain J170_02568 PF01119 DNA mismatch repair protein, C-terminal domain J170_02569 PF11741 AMIN domain J170_02569 PF01520 N-acetylmuramoyl-L-alanine amidase J170_02570 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J170_02571 PF03853 YjeF-related protein N-terminus J170_02571 PF01256 Carbohydrate kinase J170_02572 PF08331 Domain of unknown function (DUF1730) J170_02573 PF02601 Exonuclease VII, large subunit J170_02573 PF13742 OB-fold nucleic acid binding domain J170_02575 PF03781 Sulfatase-modifying factor enzyme 1 J170_02576 PF01612 3'-5' exonuclease J170_02576 PF00570 HRDC domain J170_02578 PF13298 DNA polymerase Ligase (LigD) J170_02578 PF04679 ATP dependent DNA ligase C terminal region J170_02578 PF01068 ATP dependent DNA ligase domain J170_02582 PF00589 Phage integrase family J170_02586 PF05598 Transposase domain (DUF772) J170_02588 PF01527 Transposase J170_02592 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J170_02592 PF00171 Aldehyde dehydrogenase family J170_02592 PF14850 DNA-binding domain of Proline dehydrogenase J170_02592 PF01619 Proline dehydrogenase J170_02594 PF01527 Transposase J170_02596 PF13276 HTH-like domain J170_02596 PF00665 Integrase core domain J170_02596 PF13333 Integrase core domain J170_02598 PF00239 Resolvase, N terminal domain J170_02598 PF02796 Helix-turn-helix domain of resolvase J170_02601 PF02384 N-6 DNA Methylase J170_02602 PF09572 XamI restriction endonuclease J170_02614 PF01584 CheW-like domain J170_02615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_02615 PF12729 Four helix bundle sensory module for signal transduction J170_02615 PF00672 HAMP domain J170_02616 PF02245 Methylpurine-DNA glycosylase (MPG) J170_02617 PF00270 DEAD/DEAH box helicase J170_02617 PF08494 DEAD/H associated J170_02617 PF00271 Helicase conserved C-terminal domain J170_02620 PF04386 Stringent starvation protein B J170_02621 PF02798 Glutathione S-transferase, N-terminal domain J170_02621 PF00043 Glutathione S-transferase, C-terminal domain J170_02622 PF02167 Cytochrome C1 family J170_02623 PF00033 Cytochrome b/b6/petB J170_02623 PF00032 Cytochrome b(C-terminal)/b6/petD J170_02624 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal J170_02624 PF00355 Rieske [2Fe-2S] domain J170_02625 PF01464 Transglycosylase SLT domain J170_02628 PF01938 TRAM domain J170_02628 PF00919 Uncharacterized protein family UPF0004 J170_02628 PF04055 Radical SAM superfamily J170_02629 PF02562 PhoH-like protein J170_02631 PF02130 Uncharacterized protein family UPF0054 J170_02633 PF00571 CBS domain J170_02633 PF03471 Transporter associated domain J170_02636 PF00171 Aldehyde dehydrogenase family J170_02637 PF00528 Binding-protein-dependent transport system inner membrane component J170_02638 PF00528 Binding-protein-dependent transport system inner membrane component J170_02639 PF08402 TOBE domain J170_02639 PF00005 ABC transporter J170_02640 PF02321 Outer membrane efflux protein J170_02641 PF07690 Major Facilitator Superfamily J170_02642 PF13533 Biotin-lipoyl like J170_02643 PF13416 Bacterial extracellular solute-binding protein J170_02644 PF00202 Aminotransferase class-III J170_02645 PF00120 Glutamine synthetase, catalytic domain J170_02646 PF07722 Peptidase C26 J170_02647 PF00120 Glutamine synthetase, catalytic domain J170_02648 PF01266 FAD dependent oxidoreductase J170_02649 PF00990 Diguanylate cyclase, GGDEF domain J170_02649 PF00072 Response regulator receiver domain J170_02650 PF01814 Hemerythrin HHE cation binding domain J170_02651 PF00083 Sugar (and other) transporter J170_02651 PF07690 Major Facilitator Superfamily J170_02653 PF00384 Molybdopterin oxidoreductase J170_02654 PF02634 FdhD/NarQ family J170_02655 PF07690 Major Facilitator Superfamily J170_02656 PF00202 Aminotransferase class-III J170_02658 PF04286 Protein of unknown function (DUF445) J170_02659 PF01627 Hpt domain J170_02659 PF00672 HAMP domain J170_02659 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_02659 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J170_02659 PF00072 Response regulator receiver domain J170_02659 PF00512 His Kinase A (phospho-acceptor) domain J170_02660 PF00072 Response regulator receiver domain J170_02661 PF07690 Major Facilitator Superfamily J170_02662 PF05088 Bacterial NAD-glutamate dehydrogenase J170_02664 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J170_02664 PF00529 HlyD membrane-fusion protein of T1SS J170_02665 PF00873 AcrB/AcrD/AcrF family J170_02666 PF00356 Bacterial regulatory proteins, lacI family J170_02667 PF00391 PEP-utilising enzyme, mobile domain J170_02667 PF02896 PEP-utilising enzyme, TIM barrel domain J170_02667 PF05524 PEP-utilising enzyme, N-terminal J170_02667 PF00381 PTS HPr component phosphorylation site J170_02667 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J170_02668 PF00294 pfkB family carbohydrate kinase J170_02669 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J170_02677 PF07549 SecD/SecF GG Motif J170_02677 PF02355 Protein export membrane protein J170_02678 PF02355 Protein export membrane protein J170_02678 PF07549 SecD/SecF GG Motif J170_02678 PF13721 SecD export protein N-terminal TM region J170_02679 PF02699 Preprotein translocase subunit J170_02680 PF01702 Queuine tRNA-ribosyltransferase J170_02681 PF02547 Queuosine biosynthesis protein J170_02690 PF02927 Cellulase N-terminal ig-like domain J170_02690 PF00759 Glycosyl hydrolase family 9 J170_02692 PF00037 4Fe-4S binding domain J170_02695 PF01467 Cytidylyltransferase-like J170_02697 PF00183 Hsp90 protein J170_02697 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_02701 PF07715 TonB-dependent Receptor Plug Domain J170_02701 PF00593 TonB dependent receptor J170_02703 PF04616 Glycosyl hydrolases family 43 J170_02704 PF07532 Bacterial Ig-like domain (group 4) J170_02705 PF00593 TonB dependent receptor J170_02705 PF07715 TonB-dependent Receptor Plug Domain J170_02707 PF00082 Subtilase family J170_02707 PF09286 Pro-kumamolisin, activation domain J170_02713 PF13520 Amino acid permease J170_02716 PF01321 Creatinase/Prolidase N-terminal domain J170_02716 PF00557 Metallopeptidase family M24 J170_02717 PF00171 Aldehyde dehydrogenase family J170_02718 PF00701 Dihydrodipicolinate synthetase family J170_02719 PF07992 Pyridine nucleotide-disulphide oxidoreductase J170_02719 PF04324 BFD-like [2Fe-2S] binding domain J170_02721 PF01266 FAD dependent oxidoreductase J170_02722 PF05544 Proline racemase J170_02724 PF00448 SRP54-type protein, GTPase domain J170_02724 PF02881 SRP54-type protein, helical bundle domain J170_02725 PF00633 Helix-hairpin-helix motif J170_02725 PF10576 Iron-sulfur binding domain of endonuclease III J170_02725 PF00730 HhH-GPD superfamily base excision DNA repair protein J170_02725 PF14815 NUDIX domain J170_02726 PF04362 Bacterial Fe(2+) trafficking J170_02727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_02727 PF13426 PAS domain J170_02727 PF00072 Response regulator receiver domain J170_02733 PF08212 Lipocalin-like domain J170_02735 PF12806 Acetyl-CoA dehydrogenase C-terminal like J170_02735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J170_02735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J170_02735 PF02770 Acyl-CoA dehydrogenase, middle domain J170_02737 PF02779 Transketolase, pyrimidine binding domain J170_02737 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J170_02737 PF02780 Transketolase, C-terminal domain J170_02741 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family J170_02742 PF16123 Hydroxyacylglutathione hydrolase C-terminus J170_02742 PF00753 Metallo-beta-lactamase superfamily J170_02743 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J170_02743 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J170_02746 PF03808 Glycosyl transferase WecB/TagA/CpsF family J170_02749 PF14667 Polysaccharide biosynthesis C-terminal domain J170_02751 PF00534 Glycosyl transferases group 1 J170_02751 PF13439 Glycosyltransferase Family 4 J170_02755 PF02397 Bacterial sugar transferase J170_02759 PF13411 MerR HTH family regulatory protein J170_02760 PF00216 Bacterial DNA-binding protein J170_02761 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J170_02761 PF03483 B3/4 domain J170_02761 PF03484 tRNA synthetase B5 domain J170_02761 PF03147 Ferredoxin-fold anticodon binding domain J170_02761 PF01588 Putative tRNA binding domain J170_02762 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J170_02762 PF01409 tRNA synthetases class II core domain (F) J170_02763 PF00453 Ribosomal protein L20 J170_02764 PF01632 Ribosomal protein L35 J170_02766 PF00707 Translation initiation factor IF-3, C-terminal domain J170_02766 PF05198 Translation initiation factor IF-3, N-terminal domain J170_02767 PF02824 TGS domain J170_02767 PF03129 Anticodon binding domain J170_02767 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J170_02767 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J170_02768 PF00356 Bacterial regulatory proteins, lacI family J170_02769 PF00128 Alpha amylase, catalytic domain J170_02769 PF00686 Starch binding domain J170_02770 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J170_02772 PF10566 Glycoside hydrolase 97 J170_02772 PF14508 Glycosyl-hydrolase 97 N-terminal J170_02772 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation J170_02776 PF00128 Alpha amylase, catalytic domain J170_02778 PF01527 Transposase J170_02787 PF03135 CagE, TrbE, VirB family, component of type IV transporter system J170_02790 PF01464 Transglycosylase SLT domain J170_02791 PF00437 Type II/IV secretion system protein J170_02792 PF03743 Bacterial conjugation TrbI-like protein J170_02796 PF02534 Type IV secretory system Conjugative DNA transfer J170_02799 PF02151 UvrB/uvrC motif J170_02799 PF04851 Type III restriction enzyme, res subunit J170_02799 PF00271 Helicase conserved C-terminal domain J170_02799 PF17757 UvrB interaction domain J170_02799 PF12344 Ultra-violet resistance protein B J170_02807 PF01527 Transposase J170_02816 PF01555 DNA methylase J170_02826 PF00182 Chitinase class I J170_02837 PF01527 Transposase J170_02838 PF00114 Pilin (bacterial filament) J170_02838 PF07963 Prokaryotic N-terminal methylation motif J170_02839 PF05567 Neisseria PilC beta-propeller domain J170_02842 PF07694 5TMR of 5TMR-LYT J170_02842 PF06580 Histidine kinase J170_02842 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_02843 PF11892 Domain of unknown function (DUF3412) J170_02843 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases J170_02843 PF03641 Possible lysine decarboxylase J170_02844 PF00593 TonB dependent receptor J170_02845 PF01914 MarC family integral membrane protein J170_02847 PF00462 Glutaredoxin J170_02848 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J170_02848 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J170_02849 PF02222 ATP-grasp domain J170_02849 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J170_02850 PF00731 AIR carboxylase J170_02852 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain J170_02852 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain J170_02854 PF00013 KH domain J170_02854 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J170_02854 PF01138 3' exoribonuclease family, domain 1 J170_02854 PF00575 S1 RNA binding domain J170_02854 PF03725 3' exoribonuclease family, domain 2 J170_02855 PF00312 Ribosomal protein S15 J170_02856 PF16198 tRNA pseudouridylate synthase B C-terminal domain J170_02856 PF01509 TruB family pseudouridylate synthase (N terminal domain) J170_02856 PF09157 Pseudouridine synthase II TruB, C-terminal J170_02857 PF02033 Ribosome-binding factor A J170_02858 PF11987 Translation-initiation factor 2 J170_02858 PF00009 Elongation factor Tu GTP binding domain J170_02858 PF08364 Bacterial translation initiation factor IF-2 associated region J170_02858 PF04760 Translation initiation factor IF-2, N-terminal region J170_02859 PF00575 S1 RNA binding domain J170_02859 PF13184 NusA-like KH domain J170_02859 PF08529 NusA N-terminal domain J170_02860 PF17384 RimP C-terminal SH3 domain J170_02860 PF02576 RimP N-terminal domain J170_02862 PF00361 Proton-conducting membrane transporter J170_02863 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus J170_02863 PF00361 Proton-conducting membrane transporter J170_02864 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J170_02864 PF00361 Proton-conducting membrane transporter J170_02865 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J170_02866 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 J170_02867 PF12838 4Fe-4S dicluster domain J170_02868 PF00146 NADH dehydrogenase J170_02869 PF00384 Molybdopterin oxidoreductase J170_02869 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal J170_02869 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J170_02870 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J170_02870 PF10531 SLBB domain J170_02870 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J170_02872 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit J170_02873 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit J170_02874 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit J170_02875 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 J170_02878 PF00121 Triosephosphate isomerase J170_02879 PF00106 short chain dehydrogenase J170_02882 PF00563 EAL domain J170_02882 PF00990 Diguanylate cyclase, GGDEF domain J170_02882 PF03707 Bacterial signalling protein N terminal repeat J170_02885 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J170_02885 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J170_02885 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J170_02885 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J170_02886 PF17848 Acetyl-coA carboxylase zinc finger domain J170_02886 PF01039 Carboxyl transferase domain J170_02887 PF00290 Tryptophan synthase alpha chain J170_02889 PF00291 Pyridoxal-phosphate dependent enzyme J170_02890 PF03466 LysR substrate binding domain J170_02890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_02891 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase J170_02892 PF01416 tRNA pseudouridine synthase J170_02896 PF01118 Semialdehyde dehydrogenase, NAD binding domain J170_02896 PF02774 Semialdehyde dehydrogenase, dimerisation domain J170_02897 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J170_02897 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J170_02898 PF01264 Chorismate synthase J170_02899 PF05175 Methyltransferase small domain J170_02900 PF02630 SCO1/SenC J170_02901 PF02666 Phosphatidylserine decarboxylase J170_02903 PF05872 Bacterial protein of unknown function (DUF853) J170_02904 PF00293 NUDIX domain J170_02907 PF03449 Transcription elongation factor, N-terminal J170_02907 PF01272 Transcription elongation factor, GreA/GreB, C-term J170_02908 PF18693 TRAM domain J170_02908 PF00919 Uncharacterized protein family UPF0004 J170_02908 PF04055 Radical SAM superfamily J170_02909 PF01738 Dienelactone hydrolase family J170_02913 PF00692 dUTPase J170_02914 PF10609 NUBPL iron-transfer P-loop NTPase J170_02915 PF07715 TonB-dependent Receptor Plug Domain J170_02915 PF00593 TonB dependent receptor J170_02918 PF01431 Peptidase family M13 J170_02918 PF05649 Peptidase family M13 J170_02919 PF05649 Peptidase family M13 J170_02919 PF01431 Peptidase family M13 J170_02922 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J170_02923 PF07992 Pyridine nucleotide-disulphide oxidoreductase J170_02923 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J170_02924 PF01266 FAD dependent oxidoreductase J170_02925 PF04235 Protein of unknown function (DUF418) J170_02926 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J170_02927 PF00877 NlpC/P60 family J170_02928 PF00877 NlpC/P60 family J170_02931 PF00375 Sodium:dicarboxylate symporter family J170_02932 PF00245 Alkaline phosphatase J170_02933 PF01171 PP-loop family J170_02933 PF09179 TilS substrate binding domain J170_02933 PF11734 TilS substrate C-terminal domain J170_02934 PF02609 Exonuclease VII small subunit J170_02935 PF00348 Polyprenyl synthetase J170_02936 PF14521 Lysine-specific metallo-endopeptidase J170_02938 PF01523 Putative modulator of DNA gyrase J170_02939 PF04751 Protein of unknown function (DUF615) J170_02940 PF01523 Putative modulator of DNA gyrase J170_02942 PF13116 Protein of unknown function J170_02942 PF13502 AsmA-like C-terminal region J170_02943 PF10150 Ribonuclease E/G family J170_02943 PF00575 S1 RNA binding domain J170_02944 PF02545 Maf-like protein J170_02945 PF04402 Protein of unknown function (DUF541) J170_02948 PF02590 Predicted SPOUT methyltransferase J170_02951 PF01467 Cytidylyltransferase-like J170_02954 PF08264 Anticodon-binding domain of tRNA J170_02954 PF00133 tRNA synthetases class I (I, L, M and V) J170_02954 PF13603 Leucyl-tRNA synthetase, Domain 2 J170_02956 PF00085 Thioredoxin J170_02961 PF04070 Domain of unknown function (DUF378) J170_02962 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J170_02964 PF03466 LysR substrate binding domain J170_02964 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_02969 PF00005 ABC transporter J170_02969 PF00664 ABC transporter transmembrane region J170_02972 PF00873 AcrB/AcrD/AcrF family J170_02975 PF02321 Outer membrane efflux protein J170_02976 PF00486 Transcriptional regulatory protein, C terminal J170_02976 PF00072 Response regulator receiver domain J170_02977 PF00512 His Kinase A (phospho-acceptor) domain J170_02977 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_02977 PF00672 HAMP domain J170_02978 PF00999 Sodium/hydrogen exchanger family J170_02979 PF00144 Beta-lactamase J170_02980 PF03737 Aldolase/RraA J170_02983 PF00990 Diguanylate cyclase, GGDEF domain J170_02983 PF00072 Response regulator receiver domain J170_02984 PF00849 RNA pseudouridylate synthase J170_02984 PF01479 S4 domain J170_02985 PF00990 Diguanylate cyclase, GGDEF domain J170_02985 PF08448 PAS fold J170_02985 PF00563 EAL domain J170_02986 PF03880 DbpA RNA binding domain J170_02986 PF00270 DEAD/DEAH box helicase J170_02986 PF00271 Helicase conserved C-terminal domain J170_02996 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J170_02996 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J170_02998 PF00654 Voltage gated chloride channel J170_02999 PF08240 Alcohol dehydrogenase GroES-like domain J170_02999 PF00107 Zinc-binding dehydrogenase J170_03002 PF00593 TonB dependent receptor J170_03002 PF07715 TonB-dependent Receptor Plug Domain J170_03004 PF01483 Proprotein convertase P-domain J170_03004 PF00082 Subtilase family J170_03007 PF00082 Subtilase family J170_03007 PF01483 Proprotein convertase P-domain J170_03009 PF00248 Aldo/keto reductase family J170_03010 PF07690 Major Facilitator Superfamily J170_03011 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_03011 PF03466 LysR substrate binding domain J170_03013 PF12833 Helix-turn-helix domain J170_03013 PF06719 AraC-type transcriptional regulator N-terminus J170_03015 PF00440 Bacterial regulatory proteins, tetR family J170_03015 PF16859 Tetracyclin repressor-like, C-terminal domain J170_03016 PF02321 Outer membrane efflux protein J170_03017 PF00873 AcrB/AcrD/AcrF family J170_03018 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J170_03018 PF00529 HlyD membrane-fusion protein of T1SS J170_03020 PF01475 Ferric uptake regulator family J170_03021 PF00749 tRNA synthetases class I (E and Q), catalytic domain J170_03026 PF06123 Inner membrane protein CreD J170_03028 PF00672 HAMP domain J170_03028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_03028 PF00512 His Kinase A (phospho-acceptor) domain J170_03029 PF00072 Response regulator receiver domain J170_03029 PF00486 Transcriptional regulatory protein, C terminal J170_03030 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ J170_03032 PF03461 TRCF domain J170_03032 PF00270 DEAD/DEAH box helicase J170_03032 PF17757 UvrB interaction domain J170_03032 PF02559 CarD-like/TRCF domain J170_03032 PF00271 Helicase conserved C-terminal domain J170_03039 PF09078 CheY binding J170_03039 PF01584 CheW-like domain J170_03039 PF01627 Hpt domain J170_03039 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_03039 PF02895 Signal transducing histidine kinase, homodimeric domain J170_03040 PF02203 Tar ligand binding domain homologue J170_03040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_03040 PF00672 HAMP domain J170_03041 PF01584 CheW-like domain J170_03042 PF00990 Diguanylate cyclase, GGDEF domain J170_03042 PF13426 PAS domain J170_03042 PF00563 EAL domain J170_03043 PF01739 CheR methyltransferase, SAM binding domain J170_03043 PF03705 CheR methyltransferase, all-alpha domain J170_03044 PF01339 CheB methylesterase J170_03044 PF00072 Response regulator receiver domain J170_03045 PF13091 PLD-like domain J170_03046 PF01431 Peptidase family M13 J170_03046 PF05649 Peptidase family M13 J170_03048 PF00300 Histidine phosphatase superfamily (branch 1) J170_03049 PF04493 Endonuclease V J170_03051 PF02678 Pirin J170_03051 PF05726 Pirin C-terminal cupin domain J170_03054 PF05726 Pirin C-terminal cupin domain J170_03054 PF02678 Pirin J170_03055 PF13722 5TM C-terminal transporter carbon starvation CstA J170_03055 PF02554 Carbon starvation protein CstA J170_03056 PF04328 Selenoprotein, putative J170_03065 PF01527 Transposase J170_03067 PF02625 XdhC and CoxI family J170_03067 PF13478 XdhC Rossmann domain J170_03068 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J170_03068 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J170_03069 PF00941 FAD binding domain in molybdopterin dehydrogenase J170_03069 PF03450 CO dehydrogenase flavoprotein C-terminal domain J170_03070 PF00111 2Fe-2S iron-sulfur cluster binding domain J170_03070 PF01799 [2Fe-2S] binding domain J170_03070 PF10518 TAT (twin-arginine translocation) pathway signal sequence J170_03071 PF00698 Acyl transferase domain J170_03071 PF02801 Beta-ketoacyl synthase, C-terminal domain J170_03071 PF00550 Phosphopantetheine attachment site J170_03071 PF00109 Beta-ketoacyl synthase, N-terminal domain J170_03071 PF16197 Ketoacyl-synthetase C-terminal extension J170_03071 PF14765 Polyketide synthase dehydratase J170_03071 PF09277 Erythronolide synthase, docking J170_03071 PF08990 Erythronolide synthase docking J170_03071 PF08659 KR domain J170_03071 PF08240 Alcohol dehydrogenase GroES-like domain J170_03072 PF00563 EAL domain J170_03072 PF01590 GAF domain J170_03072 PF00990 Diguanylate cyclase, GGDEF domain J170_03072 PF00360 Phytochrome region J170_03075 PF12161 HsdM N-terminal domain J170_03075 PF02384 N-6 DNA Methylase J170_03081 PF00436 Single-strand binding protein family J170_03082 PF00348 Polyprenyl synthetase J170_03084 PF02875 Mur ligase family, glutamate ligase domain J170_03084 PF08245 Mur ligase middle domain J170_03087 PF00696 Amino acid kinase family J170_03087 PF01842 ACT domain J170_03088 PF02567 Phenazine biosynthesis-like protein J170_03089 PF02567 Phenazine biosynthesis-like protein J170_03091 PF02566 OsmC-like protein J170_03092 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J170_03092 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J170_03093 PF03652 Holliday junction resolvase J170_03094 PF02622 Uncharacterized ACR, COG1678 J170_03095 PF13673 Acetyltransferase (GNAT) domain J170_03095 PF13302 Acetyltransferase (GNAT) domain J170_03095 PF03352 Methyladenine glycosylase J170_03095 PF00117 Glutamine amidotransferase class-I J170_03095 PF00958 GMP synthase C terminal domain J170_03098 PF03211 Pectate lyase J170_03099 PF00437 Type II/IV secretion system protein J170_03100 PF00437 Type II/IV secretion system protein J170_03101 PF01168 Alanine racemase, N-terminal domain J170_03102 PF03807 NADP oxidoreductase coenzyme F420-dependent J170_03102 PF14748 Pyrroline-5-carboxylate reductase dimerisation J170_03104 PF01551 Peptidase family M23 J170_03108 PF01965 DJ-1/PfpI family J170_03110 PF02082 Transcriptional regulator J170_03111 PF01458 Uncharacterized protein family (UPF0051) J170_03112 PF00005 ABC transporter J170_03113 PF01458 Uncharacterized protein family (UPF0051) J170_03114 PF00266 Aminotransferase class-V J170_03116 PF00355 Rieske [2Fe-2S] domain J170_03117 PF00593 TonB dependent receptor J170_03117 PF07715 TonB-dependent Receptor Plug Domain J170_03118 PF13640 2OG-Fe(II) oxygenase superfamily J170_03118 PF18331 PKHD-type hydroxylase C-terminal domain J170_03123 PF02424 ApbE family J170_03124 PF00667 FAD binding domain J170_03124 PF00175 Oxidoreductase NAD-binding domain J170_03124 PF00258 Flavodoxin J170_03128 PF01546 Peptidase family M20/M25/M40 J170_03128 PF07687 Peptidase dimerisation domain J170_03130 PF01636 Phosphotransferase enzyme family J170_03131 PF00483 Nucleotidyl transferase J170_03132 PF00308 Bacterial dnaA protein J170_03133 PF01594 AI-2E family transporter J170_03135 PF02769 AIR synthase related protein, C-terminal domain J170_03135 PF00586 AIR synthase related protein, N-terminal domain J170_03137 PF00551 Formyl transferase J170_03141 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J170_03142 PF01722 BolA-like protein J170_03143 PF00571 CBS domain J170_03143 PF01380 SIS domain J170_03146 PF03968 OstA-like protein J170_03147 PF00005 ABC transporter J170_03148 PF04963 Sigma-54 factor, core binding domain J170_03148 PF00309 Sigma-54 factor, Activator interacting domain (AID) J170_03148 PF04552 Sigma-54, DNA binding domain J170_03149 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J170_03150 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J170_03151 PF07475 HPr Serine kinase C-terminal domain J170_03151 PF02603 HPr Serine kinase N terminus J170_03152 PF03668 P-loop ATPase protein family J170_03154 PF00381 PTS HPr component phosphorylation site J170_03155 PF02896 PEP-utilising enzyme, TIM barrel domain J170_03155 PF00391 PEP-utilising enzyme, mobile domain J170_03155 PF05524 PEP-utilising enzyme, N-terminal J170_03156 PF01769 Divalent cation transporter J170_03156 PF03448 MgtE intracellular N domain J170_03156 PF00571 CBS domain J170_03157 PF00756 Putative esterase J170_03158 PF02322 Cytochrome bd terminal oxidase subunit II J170_03159 PF01654 Cytochrome bd terminal oxidase subunit I J170_03161 PF00324 Amino acid permease J170_03162 PF00544 Pectate lyase J170_03163 PF00561 alpha/beta hydrolase fold J170_03164 PF00196 Bacterial regulatory proteins, luxR family J170_03165 PF00324 Amino acid permease J170_03170 PF12706 Beta-lactamase superfamily domain J170_03171 PF04820 Tryptophan halogenase J170_03176 PF00376 MerR family regulatory protein J170_03176 PF09278 MerR, DNA binding J170_03177 PF07690 Major Facilitator Superfamily J170_03179 PF03738 Glutathionylspermidine synthase preATP-grasp J170_03184 PF04012 PspA/IM30 family J170_03186 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J170_03186 PF01243 Pyridoxamine 5'-phosphate oxidase J170_03187 PF01202 Shikimate kinase J170_03188 PF01761 3-dehydroquinate synthase J170_03190 PF01208 Uroporphyrinogen decarboxylase (URO-D) J170_03203 PF00158 Sigma-54 interaction domain J170_03203 PF01590 GAF domain J170_03203 PF02954 Bacterial regulatory protein, Fis family J170_03204 PF07690 Major Facilitator Superfamily J170_03205 PF17149 Periplasmic sensor domain found in signal transduction proteins J170_03205 PF00072 Response regulator receiver domain J170_03205 PF00672 HAMP domain J170_03205 PF01627 Hpt domain J170_03205 PF00512 His Kinase A (phospho-acceptor) domain J170_03205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_03206 PF01627 Hpt domain J170_03206 PF00512 His Kinase A (phospho-acceptor) domain J170_03206 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_03206 PF00072 Response regulator receiver domain J170_03206 PF17149 Periplasmic sensor domain found in signal transduction proteins J170_03206 PF00672 HAMP domain J170_03208 PF00072 Response regulator receiver domain J170_03208 PF01627 Hpt domain J170_03208 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_03208 PF00512 His Kinase A (phospho-acceptor) domain J170_03209 PF04264 YceI-like domain J170_03213 PF03315 Serine dehydratase beta chain J170_03213 PF03313 Serine dehydratase alpha chain J170_03214 PF12697 Alpha/beta hydrolase family J170_03215 PF03447 Homoserine dehydrogenase, NAD binding domain J170_03215 PF00742 Homoserine dehydrogenase J170_03215 PF00696 Amino acid kinase family J170_03216 PF01053 Cys/Met metabolism PLP-dependent enzyme J170_03217 PF00561 alpha/beta hydrolase fold J170_03219 PF01551 Peptidase family M23 J170_03219 PF01476 LysM domain J170_03219 PF08525 Opacity-associated protein A N-terminal motif J170_03220 PF00009 Elongation factor Tu GTP binding domain J170_03220 PF16658 Class II release factor RF3, C-terminal domain J170_03221 PF03006 Haemolysin-III related J170_03222 PF05170 AsmA family J170_03223 PF00571 CBS domain J170_03223 PF00478 IMP dehydrogenase / GMP reductase domain J170_03224 PF00535 Glycosyl transferase family 2 J170_03225 PF00912 Transglycosylase J170_03226 PF01430 Hsp33 protein J170_03228 PF00593 TonB dependent receptor J170_03228 PF07715 TonB-dependent Receptor Plug Domain J170_03230 PF00440 Bacterial regulatory proteins, tetR family J170_03231 PF00561 alpha/beta hydrolase fold J170_03232 PF09317 Domain of unknown function (DUF1974) J170_03232 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J170_03232 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J170_03237 PF01597 Glycine cleavage H-protein J170_03238 PF08669 Glycine cleavage T-protein C-terminal barrel domain J170_03238 PF01571 Aminomethyltransferase folate-binding domain J170_03240 PF01145 SPFH domain / Band 7 family J170_03240 PF16200 C-terminal region of band_7 J170_03241 PF02694 Uncharacterised BCR, YnfA/UPF0060 family J170_03242 PF03819 MazG nucleotide pyrophosphohydrolase domain J170_03243 PF00459 Inositol monophosphatase family J170_03244 PF00293 NUDIX domain J170_03245 PF00202 Aminotransferase class-III J170_03246 PF04452 RNA methyltransferase J170_03247 PF02685 Glucokinase J170_03250 PF01476 LysM domain J170_03250 PF00704 Glycosyl hydrolases family 18 J170_03251 PF00728 Glycosyl hydrolase family 20, catalytic domain J170_03251 PF02838 Glycosyl hydrolase family 20, domain 2 J170_03251 PF07691 PA14 domain J170_03253 PF14310 Fibronectin type III-like domain J170_03253 PF07691 PA14 domain J170_03253 PF00933 Glycosyl hydrolase family 3 N terminal domain J170_03253 PF01915 Glycosyl hydrolase family 3 C-terminal domain J170_03255 PF01301 Glycosyl hydrolases family 35 J170_03256 PF13520 Amino acid permease J170_03258 PF11975 Family 4 glycosyl hydrolase C-terminal domain J170_03258 PF02056 Family 4 glycosyl hydrolase J170_03260 PF07971 Glycosyl hydrolase family 92 J170_03260 PF17678 Glycosyl hydrolase family 92 N-terminal domain J170_03261 PF01301 Glycosyl hydrolases family 35 J170_03267 PF03932 CutC family J170_03268 PF01112 Asparaginase J170_03269 PF13302 Acetyltransferase (GNAT) domain J170_03272 PF01584 CheW-like domain J170_03272 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_03272 PF01627 Hpt domain J170_03272 PF00072 Response regulator receiver domain J170_03273 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_03273 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J170_03275 PF00072 Response regulator receiver domain J170_03276 PF00072 Response regulator receiver domain J170_03277 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain J170_03277 PF02951 Prokaryotic glutathione synthetase, N-terminal domain J170_03279 PF03747 ADP-ribosylglycohydrolase J170_03280 PF00814 Glycoprotease family J170_03281 PF13307 Helicase C-terminal domain J170_03281 PF04851 Type III restriction enzyme, res subunit J170_03283 PF00912 Transglycosylase J170_03283 PF00905 Penicillin binding protein transpeptidase domain J170_03283 PF14814 Bifunctional transglycosylase second domain J170_03284 PF00535 Glycosyl transferase family 2 J170_03286 PF04607 Region found in RelA / SpoT proteins J170_03286 PF13291 ACT domain J170_03286 PF02824 TGS domain J170_03287 PF12706 Beta-lactamase superfamily domain J170_03288 PF03070 TENA/THI-4/PQQC family J170_03289 PF05402 Coenzyme PQQ synthesis protein D (PqqD) J170_03290 PF13186 Iron-sulfur cluster-binding domain J170_03290 PF04055 Radical SAM superfamily J170_03293 PF02685 Glucokinase J170_03295 PF11898 Domain of unknown function (DUF3418) J170_03295 PF00270 DEAD/DEAH box helicase J170_03295 PF04408 Helicase associated domain (HA2) J170_03295 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J170_03295 PF00271 Helicase conserved C-terminal domain J170_03296 PF00210 Ferritin-like domain J170_03297 PF00271 Helicase conserved C-terminal domain J170_03297 PF00270 DEAD/DEAH box helicase J170_03297 PF00570 HRDC domain J170_03297 PF09382 RQC domain J170_03297 PF16124 RecQ zinc-binding J170_03304 PF00672 HAMP domain J170_03304 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_03304 PF02203 Tar ligand binding domain homologue J170_03308 PF07536 HWE histidine kinase J170_03308 PF13581 Histidine kinase-like ATPase domain J170_03308 PF13426 PAS domain J170_03309 PF06508 Queuosine biosynthesis protein QueC J170_03311 PF04055 Radical SAM superfamily J170_03313 PF00691 OmpA family J170_03314 PF04052 TolB amino-terminal domain J170_03314 PF07676 WD40-like Beta Propeller Repeat J170_03316 PF02472 Biopolymer transport protein ExbD/TolR J170_03317 PF01618 MotA/TolQ/ExbB proton channel family J170_03318 PF03061 Thioesterase superfamily J170_03319 PF05496 Holliday junction DNA helicase RuvB P-loop domain J170_03319 PF17864 RuvB AAA lid domain J170_03319 PF05491 RuvB C-terminal winged helix domain J170_03321 PF02705 K+ potassium transporter J170_03322 PF01330 RuvA N terminal domain J170_03322 PF07499 RuvA, C-terminal domain J170_03323 PF02075 Crossover junction endodeoxyribonuclease RuvC J170_03324 PF01709 Transcriptional regulator J170_03327 PF02938 GAD domain J170_03327 PF00152 tRNA synthetases class II (D, K and N) J170_03327 PF01336 OB-fold nucleic acid binding domain J170_03330 PF07690 Major Facilitator Superfamily J170_03333 PF04185 Phosphoesterase family J170_03333 PF05506 Domain of unknown function (DUF756) J170_03336 PF03466 LysR substrate binding domain J170_03336 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_03338 PF00005 ABC transporter J170_03338 PF12848 ABC transporter J170_03339 PF07715 TonB-dependent Receptor Plug Domain J170_03339 PF00593 TonB dependent receptor J170_03341 PF00593 TonB dependent receptor J170_03341 PF07715 TonB-dependent Receptor Plug Domain J170_03342 PF00593 TonB dependent receptor J170_03342 PF07715 TonB-dependent Receptor Plug Domain J170_03343 PF00067 Cytochrome P450 J170_03344 PF00999 Sodium/hydrogen exchanger family J170_03344 PF02254 TrkA-N domain J170_03349 PF07660 Secretin and TonB N terminus short domain J170_03349 PF07715 TonB-dependent Receptor Plug Domain J170_03349 PF00593 TonB dependent receptor J170_03351 PF06276 Ferric iron reductase FhuF-like transporter J170_03351 PF04183 IucA / IucC family J170_03352 PF07690 Major Facilitator Superfamily J170_03354 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J170_03354 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J170_03357 PF02654 Cobalamin-5-phosphate synthase J170_03359 PF02277 Phosphoribosyltransferase J170_03360 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase J170_03361 PF07685 CobB/CobQ-like glutamine amidotransferase domain J170_03361 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J170_03362 PF00155 Aminotransferase class I and II J170_03364 PF17113 Regulatory signalling modulator protein AmpE J170_03364 PF03186 CobD/Cbib protein J170_03365 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP J170_03365 PF12557 Cob(I)alamin adenosyltransferase N terminal J170_03368 PF00593 TonB dependent receptor J170_03368 PF07715 TonB-dependent Receptor Plug Domain J170_03370 PF02861 Clp amino terminal domain, pathogenicity island component J170_03370 PF17871 AAA lid domain J170_03370 PF07724 AAA domain (Cdc48 subfamily) J170_03370 PF00004 ATPase family associated with various cellular activities (AAA) J170_03370 PF10431 C-terminal, D2-small domain, of ClpB protein J170_03371 PF00005 ABC transporter J170_03372 PF00528 Binding-protein-dependent transport system inner membrane component J170_03373 PF09084 NMT1/THI5 like J170_03374 PF00248 Aldo/keto reductase family J170_03376 PF00593 TonB dependent receptor J170_03376 PF07715 TonB-dependent Receptor Plug Domain J170_03377 PF01541 GIY-YIG catalytic domain J170_03384 PF00593 TonB dependent receptor J170_03384 PF07715 TonB-dependent Receptor Plug Domain J170_03385 PF02358 Trehalose-phosphatase J170_03386 PF00723 Glycosyl hydrolases family 15 J170_03387 PF00982 Glycosyltransferase family 20 J170_03388 PF01011 PQQ enzyme repeat J170_03389 PF02203 Tar ligand binding domain homologue J170_03389 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_03389 PF00672 HAMP domain J170_03390 PF04134 Protein of unknown function, DUF393 J170_03393 PF00849 RNA pseudouridylate synthase J170_03394 PF13525 Outer membrane lipoprotein J170_03396 PF02540 NAD synthase J170_03396 PF00795 Carbon-nitrogen hydrolase J170_03398 PF01527 Transposase J170_03402 PF13406 Transglycosylase SLT domain J170_03403 PF13700 Domain of unknown function (DUF4158) J170_03403 PF01526 Tn3 transposase DDE domain J170_03407 PF01129 NAD:arginine ADP-ribosyltransferase J170_03412 PF02629 CoA binding domain J170_03412 PF00549 CoA-ligase J170_03413 PF08442 ATP-grasp domain J170_03413 PF00549 CoA-ligase J170_03414 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_03414 PF00512 His Kinase A (phospho-acceptor) domain J170_03415 PF00072 Response regulator receiver domain J170_03415 PF00158 Sigma-54 interaction domain J170_03415 PF02954 Bacterial regulatory protein, Fis family J170_03417 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J170_03417 PF00437 Type II/IV secretion system protein J170_03418 PF00437 Type II/IV secretion system protein J170_03418 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J170_03419 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J170_03419 PF00437 Type II/IV secretion system protein J170_03420 PF00114 Pilin (bacterial filament) J170_03420 PF07963 Prokaryotic N-terminal methylation motif J170_03421 PF00114 Pilin (bacterial filament) J170_03421 PF07963 Prokaryotic N-terminal methylation motif J170_03422 PF00482 Type II secretion system (T2SS), protein F J170_03423 PF01478 Type IV leader peptidase family J170_03423 PF06750 Bacterial Peptidase A24 N-terminal domain J170_03424 PF01121 Dephospho-CoA kinase J170_03427 PF01527 Transposase J170_03428 PF00665 Integrase core domain J170_03428 PF13333 Integrase core domain J170_03428 PF13276 HTH-like domain J170_03429 PF00512 His Kinase A (phospho-acceptor) domain J170_03429 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_03429 PF00989 PAS fold J170_03429 PF16736 Single Cache-like J170_03430 PF00486 Transcriptional regulatory protein, C terminal J170_03430 PF00072 Response regulator receiver domain J170_03432 PF08443 RimK-like ATP-grasp domain J170_03432 PF18030 RimK PreATP-grasp domain J170_03433 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J170_03433 PF00128 Alpha amylase, catalytic domain J170_03446 PF04002 RadC-like JAB domain J170_03451 PF13426 PAS domain J170_03451 PF00072 Response regulator receiver domain J170_03451 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_03452 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_03452 PF13426 PAS domain J170_03452 PF00072 Response regulator receiver domain J170_03458 PF01527 Transposase J170_03467 PF00072 Response regulator receiver domain J170_03467 PF13188 PAS domain J170_03467 PF08448 PAS fold J170_03467 PF00512 His Kinase A (phospho-acceptor) domain J170_03467 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_03471 PF13676 TIR domain J170_03475 PF00657 GDSL-like Lipase/Acylhydrolase J170_03475 PF03797 Autotransporter beta-domain J170_03477 PF05690 Thiazole biosynthesis protein ThiG J170_03478 PF02390 Putative methyltransferase J170_03479 PF03600 Citrate transporter J170_03479 PF02080 TrkA-C domain J170_03482 PF01557 Fumarylacetoacetate (FAA) hydrolase family J170_03483 PF01741 Large-conductance mechanosensitive channel, MscL J170_03485 PF00356 Bacterial regulatory proteins, lacI family J170_03487 PF00703 Glycosyl hydrolases family 2 J170_03487 PF02837 Glycosyl hydrolases family 2, sugar binding domain J170_03487 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain J170_03488 PF10566 Glycoside hydrolase 97 J170_03488 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation J170_03488 PF14508 Glycosyl-hydrolase 97 N-terminal J170_03490 PF00135 Carboxylesterase family J170_03491 PF08032 RNA 2'-O ribose methyltransferase substrate binding J170_03491 PF00588 SpoU rRNA Methylase family J170_03493 PF11838 ERAP1-like C-terminal domain J170_03493 PF01433 Peptidase family M1 domain J170_03496 PF01527 Transposase J170_03502 PF00873 AcrB/AcrD/AcrF family J170_03503 PF00529 HlyD membrane-fusion protein of T1SS J170_03503 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J170_03504 PF00009 Elongation factor Tu GTP binding domain J170_03505 PF01507 Phosphoadenosine phosphosulfate reductase family J170_03506 PF00175 Oxidoreductase NAD-binding domain J170_03506 PF00667 FAD binding domain J170_03506 PF00258 Flavodoxin J170_03507 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J170_03507 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J170_03508 PF01507 Phosphoadenosine phosphosulfate reductase family J170_03512 PF00512 His Kinase A (phospho-acceptor) domain J170_03512 PF00072 Response regulator receiver domain J170_03512 PF01627 Hpt domain J170_03512 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_03514 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_03514 PF03466 LysR substrate binding domain J170_03515 PF14824 Sirohaem biosynthesis protein central J170_03515 PF10414 Sirohaem synthase dimerisation region J170_03515 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J170_03516 PF00291 Pyridoxal-phosphate dependent enzyme J170_03518 PF01661 Macro domain J170_03519 PF00274 Fructose-bisphosphate aldolase class-I J170_03520 PF02887 Pyruvate kinase, alpha/beta domain J170_03520 PF00224 Pyruvate kinase, barrel domain J170_03522 PF00162 Phosphoglycerate kinase J170_03527 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J170_03527 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J170_03529 PF03922 OmpW family J170_03530 PF03922 OmpW family J170_03532 PF04273 Putative phosphatase (DUF442) J170_03532 PF00753 Metallo-beta-lactamase superfamily J170_03534 PF00528 Binding-protein-dependent transport system inner membrane component J170_03535 PF03459 TOBE domain J170_03535 PF00005 ABC transporter J170_03542 PF03734 L,D-transpeptidase catalytic domain J170_03542 PF01476 LysM domain J170_03543 PF01551 Peptidase family M23 J170_03543 PF04225 Opacity-associated protein A LysM-like domain J170_03545 PF07715 TonB-dependent Receptor Plug Domain J170_03545 PF00593 TonB dependent receptor J170_03546 PF12146 Serine aminopeptidase, S33 J170_03547 PF02779 Transketolase, pyrimidine binding domain J170_03547 PF02780 Transketolase, C-terminal domain J170_03547 PF00456 Transketolase, thiamine diphosphate binding domain J170_03548 PF00375 Sodium:dicarboxylate symporter family J170_03550 PF07584 Aerotolerance regulator N-terminal J170_03550 PF00092 von Willebrand factor type A domain J170_03554 PF07726 ATPase family associated with various cellular activities (AAA) J170_03554 PF17863 AAA lid domain J170_03556 PF00263 Bacterial type II and III secretion system protein J170_03556 PF03958 Bacterial type II/III secretion system short domain J170_03556 PF07660 Secretin and TonB N terminus short domain J170_03556 PF11741 AMIN domain J170_03561 PF17092 Penicillin-binding protein OB-like domain J170_03561 PF00912 Transglycosylase J170_03561 PF00905 Penicillin binding protein transpeptidase domain J170_03564 PF00285 Citrate synthase, C-terminal domain J170_03565 PF01197 Ribosomal protein L31 J170_03566 PF01156 Inosine-uridine preferring nucleoside hydrolase J170_03567 PF00270 DEAD/DEAH box helicase J170_03567 PF00271 Helicase conserved C-terminal domain J170_03567 PF17191 RecG wedge domain J170_03568 PF01042 Endoribonuclease L-PSP J170_03569 PF04607 Region found in RelA / SpoT proteins J170_03569 PF13291 ACT domain J170_03569 PF02824 TGS domain J170_03570 PF01192 RNA polymerase Rpb6 J170_03571 PF00625 Guanylate kinase J170_03572 PF08340 Domain of unknown function (DUF1732) J170_03572 PF03755 YicC-like family, N-terminal region J170_03573 PF01138 3' exoribonuclease family, domain 1 J170_03573 PF03725 3' exoribonuclease family, domain 2 J170_03575 PF01725 Ham1 family J170_03576 PF06969 HemN C-terminal domain J170_03576 PF04055 Radical SAM superfamily J170_03580 PF00557 Metallopeptidase family M24 J170_03582 PF05195 Aminopeptidase P, N-terminal domain J170_03582 PF00557 Metallopeptidase family M24 J170_03583 PF03695 Uncharacterised protein family (UPF0149) J170_03585 PF05164 Cell division protein ZapA J170_03587 PF01812 5-formyltetrahydrofolate cyclo-ligase family J170_03589 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J170_03591 PF13369 Transglutaminase-like superfamily J170_03592 PF00301 Rubredoxin J170_03593 PF02581 Thiamine monophosphate synthase J170_03596 PF00202 Aminotransferase class-III J170_03597 PF17874 MalT-like TPR region J170_03597 PF00196 Bacterial regulatory proteins, luxR family J170_03598 PF00127 Copper binding proteins, plastocyanin/azurin family J170_03599 PF00155 Aminotransferase class I and II J170_03601 PF00034 Cytochrome c J170_03601 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J170_03602 PF01593 Flavin containing amine oxidoreductase J170_03605 PF00202 Aminotransferase class-III J170_03606 PF00027 Cyclic nucleotide-binding domain J170_03606 PF00520 Ion transport protein J170_03609 PF01569 PAP2 superfamily J170_03610 PF01062 Bestrophin, RFP-TM, chloride channel J170_03612 PF02875 Mur ligase family, glutamate ligase domain J170_03612 PF01225 Mur ligase family, catalytic domain J170_03612 PF08245 Mur ligase middle domain J170_03614 PF00365 Phosphofructokinase J170_03616 PF03030 Inorganic H+ pyrophosphatase J170_03618 PF00719 Inorganic pyrophosphatase J170_03620 PF07715 TonB-dependent Receptor Plug Domain J170_03620 PF00593 TonB dependent receptor J170_03621 PF12833 Helix-turn-helix domain J170_03622 PF00486 Transcriptional regulatory protein, C terminal J170_03622 PF18500 CadC C-terminal domain 1 J170_03623 PF13667 ThiC-associated domain J170_03623 PF01964 Radical SAM ThiC family J170_03625 PF00593 TonB dependent receptor J170_03625 PF07715 TonB-dependent Receptor Plug Domain J170_03626 PF00672 HAMP domain J170_03626 PF02203 Tar ligand binding domain homologue J170_03626 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_03628 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J170_03628 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J170_03629 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J170_03629 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J170_03629 PF00205 Thiamine pyrophosphate enzyme, central domain J170_03631 PF00291 Pyridoxal-phosphate dependent enzyme J170_03632 PF08502 LeuA allosteric (dimerisation) domain J170_03632 PF00682 HMGL-like J170_03633 PF00180 Isocitrate/isopropylmalate dehydrogenase J170_03634 PF00694 Aconitase C-terminal domain J170_03635 PF00330 Aconitase family (aconitate hydratase) J170_03636 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_03637 PF17151 Periplasmic sensor domain J170_03637 PF00990 Diguanylate cyclase, GGDEF domain J170_03640 PF02321 Outer membrane efflux protein J170_03641 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) J170_03642 PF03279 Bacterial lipid A biosynthesis acyltransferase J170_03647 PF00390 Malic enzyme, N-terminal domain J170_03647 PF03949 Malic enzyme, NAD binding domain J170_03647 PF01515 Phosphate acetyl/butaryl transferase J170_03648 PF00375 Sodium:dicarboxylate symporter family J170_03650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_03650 PF00512 His Kinase A (phospho-acceptor) domain J170_03650 PF02743 Cache domain J170_03651 PF07690 Major Facilitator Superfamily J170_03653 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_03653 PF03466 LysR substrate binding domain J170_03654 PF00248 Aldo/keto reductase family J170_03658 PF00196 Bacterial regulatory proteins, luxR family J170_03658 PF00072 Response regulator receiver domain J170_03660 PF08521 Two-component sensor kinase N-terminal J170_03660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_03660 PF00512 His Kinase A (phospho-acceptor) domain J170_03661 PF00072 Response regulator receiver domain J170_03661 PF00486 Transcriptional regulatory protein, C terminal J170_03663 PF03600 Citrate transporter J170_03665 PF00106 short chain dehydrogenase J170_03666 PF00356 Bacterial regulatory proteins, lacI family J170_03669 PF00128 Alpha amylase, catalytic domain J170_03672 PF03193 RsgA GTPase J170_03676 PF00593 TonB dependent receptor J170_03676 PF07715 TonB-dependent Receptor Plug Domain J170_03677 PF01522 Polysaccharide deacetylase J170_03678 PF00462 Glutaredoxin J170_03681 PF01527 Transposase J170_03686 PF02645 Uncharacterised protein, DegV family COG1307 J170_03687 PF01327 Polypeptide deformylase J170_03688 PF03960 ArsC family J170_03691 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) J170_03692 PF01270 Glycosyl hydrolases family 8 J170_03693 PF03170 Bacterial cellulose synthase subunit J170_03694 PF00535 Glycosyl transferase family 2 J170_03694 PF03552 Cellulose synthase J170_03694 PF07238 PilZ domain J170_03698 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain J170_03698 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family J170_03706 PF07715 TonB-dependent Receptor Plug Domain J170_03706 PF00593 TonB dependent receptor J170_03708 PF00392 Bacterial regulatory proteins, gntR family J170_03708 PF07702 UTRA domain J170_03710 PF03958 Bacterial type II/III secretion system short domain J170_03710 PF00263 Bacterial type II and III secretion system protein J170_03712 PF10741 Type II secretion system (T2SS), protein M subtype b J170_03713 PF05137 Fimbrial assembly protein (PilN) J170_03714 PF03934 Type II secretion system (T2SS), protein K J170_03716 PF07963 Prokaryotic N-terminal methylation motif J170_03717 PF12019 Type II transport protein GspH J170_03718 PF08334 Type II secretion system (T2SS), protein G J170_03719 PF00482 Type II secretion system (T2SS), protein F J170_03720 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J170_03720 PF00437 Type II/IV secretion system protein J170_03721 PF04151 Bacterial pre-peptidase C-terminal domain J170_03721 PF00082 Subtilase family J170_03722 PF05658 Head domain of trimeric autotransporter adhesin J170_03722 PF05662 Coiled stalk of trimeric autotransporter adhesin J170_03722 PF03895 YadA-like membrane anchor domain J170_03722 PF13018 Extended Signal Peptide of Type V secretion system J170_03723 PF04151 Bacterial pre-peptidase C-terminal domain J170_03723 PF00082 Subtilase family J170_03724 PF05658 Head domain of trimeric autotransporter adhesin J170_03724 PF13018 Extended Signal Peptide of Type V secretion system J170_03724 PF03895 YadA-like membrane anchor domain J170_03724 PF05662 Coiled stalk of trimeric autotransporter adhesin J170_03725 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal J170_03725 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J170_03725 PF02769 AIR synthase related protein, C-terminal domain J170_03726 PF13098 Thioredoxin-like domain J170_03726 PF10411 Disulfide bond isomerase protein N-terminus J170_03727 PF00589 Phage integrase family J170_03727 PF02899 Phage integrase, N-terminal SAM-like domain J170_03730 PF03739 Lipopolysaccharide export system permease LptF/LptG J170_03732 PF02789 Cytosol aminopeptidase family, N-terminal domain J170_03732 PF00883 Cytosol aminopeptidase family, catalytic domain J170_03735 PF00133 tRNA synthetases class I (I, L, M and V) J170_03735 PF08264 Anticodon-binding domain of tRNA J170_03735 PF10458 Valyl tRNA synthetase tRNA binding arm J170_03736 PF07715 TonB-dependent Receptor Plug Domain J170_03736 PF00593 TonB dependent receptor J170_03737 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J170_03737 PF01464 Transglycosylase SLT domain J170_03738 PF00544 Pectate lyase J170_03741 PF01066 CDP-alcohol phosphatidyltransferase J170_03743 PF04073 Aminoacyl-tRNA editing domain J170_03743 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J170_03743 PF03129 Anticodon binding domain J170_03744 PF00816 H-NS histone family J170_03746 PF02405 Permease MlaE J170_03747 PF00005 ABC transporter J170_03748 PF03886 ABC-type transport auxiliary lipoprotein component J170_03748 PF02470 MlaD protein J170_03752 PF14307 Glycosyltransferase WbsX J170_03752 PF05045 Rhamnan synthesis protein F J170_03753 PF01144 Coenzyme A transferase J170_03754 PF01144 Coenzyme A transferase J170_03755 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J170_03755 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J170_03755 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J170_03755 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J170_03756 PF00483 Nucleotidyl transferase J170_03756 PF01050 Mannose-6-phosphate isomerase J170_03757 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J170_03757 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J170_03757 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J170_03758 PF04321 RmlD substrate binding domain J170_03759 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase J170_03760 PF00483 Nucleotidyl transferase J170_03761 PF16363 GDP-mannose 4,6 dehydratase J170_03762 PF01012 Electron transfer flavoprotein domain J170_03763 PF00766 Electron transfer flavoprotein FAD-binding domain J170_03763 PF01012 Electron transfer flavoprotein domain J170_03765 PF01040 UbiA prenyltransferase family J170_03766 PF01565 FAD binding domain J170_03766 PF04030 D-arabinono-1,4-lactone oxidase J170_03767 PF00106 short chain dehydrogenase J170_03769 PF01370 NAD dependent epimerase/dehydratase family J170_03770 PF07992 Pyridine nucleotide-disulphide oxidoreductase J170_03770 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J170_03775 PF00535 Glycosyl transferase family 2 J170_03777 PF00005 ABC transporter J170_03777 PF14524 Wzt C-terminal domain J170_03779 PF01053 Cys/Met metabolism PLP-dependent enzyme J170_03780 PF00571 CBS domain J170_03780 PF00291 Pyridoxal-phosphate dependent enzyme J170_03784 PF00437 Type II/IV secretion system protein J170_03785 PF02798 Glutathione S-transferase, N-terminal domain J170_03785 PF14497 Glutathione S-transferase, C-terminal domain J170_03787 PF00271 Helicase conserved C-terminal domain J170_03787 PF00270 DEAD/DEAH box helicase J170_03790 PF07715 TonB-dependent Receptor Plug Domain J170_03790 PF00593 TonB dependent receptor J170_03791 PF01242 6-pyruvoyl tetrahydropterin synthase J170_03794 PF13185 GAF domain J170_03796 PF00756 Putative esterase J170_03797 PF00593 TonB dependent receptor J170_03797 PF07715 TonB-dependent Receptor Plug Domain J170_03798 PF13419 Haloacid dehalogenase-like hydrolase J170_03799 PF11799 impB/mucB/samB family C-terminal domain J170_03799 PF00817 impB/mucB/samB family J170_03800 PF07977 FabA-like domain J170_03801 PF00109 Beta-ketoacyl synthase, N-terminal domain J170_03801 PF02801 Beta-ketoacyl synthase, C-terminal domain J170_03803 PF01432 Peptidase family M3 J170_03806 PF00394 Multicopper oxidase J170_03806 PF07732 Multicopper oxidase J170_03806 PF07731 Multicopper oxidase J170_03807 PF05275 Copper resistance protein B precursor (CopB) J170_03808 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J170_03814 PF01380 SIS domain J170_03815 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J170_03816 PF12704 MacB-like periplasmic core domain J170_03816 PF02687 FtsX-like permease family J170_03816 PF00005 ABC transporter J170_03817 PF00005 ABC transporter J170_03817 PF02687 FtsX-like permease family J170_03817 PF12704 MacB-like periplasmic core domain J170_03818 PF02687 FtsX-like permease family J170_03818 PF12704 MacB-like periplasmic core domain J170_03820 PF00072 Response regulator receiver domain J170_03820 PF00158 Sigma-54 interaction domain J170_03821 PF14602 Hexapeptide repeat of succinyl-transferase J170_03821 PF12804 MobA-like NTP transferase domain J170_03821 PF00132 Bacterial transferase hexapeptide (six repeats) J170_03824 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J170_03824 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J170_03825 PF02874 ATP synthase alpha/beta family, beta-barrel domain J170_03825 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J170_03826 PF00231 ATP synthase J170_03827 PF02874 ATP synthase alpha/beta family, beta-barrel domain J170_03827 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J170_03827 PF00306 ATP synthase alpha/beta chain, C terminal domain J170_03828 PF00213 ATP synthase delta (OSCP) subunit J170_03829 PF00430 ATP synthase B/B' CF(0) J170_03830 PF00137 ATP synthase subunit C J170_03831 PF00119 ATP synthase A chain J170_03835 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J170_03835 PF07992 Pyridine nucleotide-disulphide oxidoreductase J170_03837 PF02817 e3 binding domain J170_03837 PF00364 Biotin-requiring enzyme J170_03837 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J170_03843 PF03180 NLPA lipoprotein J170_03844 PF00528 Binding-protein-dependent transport system inner membrane component J170_03845 PF09383 NIL domain J170_03845 PF00005 ABC transporter J170_03846 PF00892 EamA-like transporter family J170_03847 PF04461 Protein of unknown function (DUF520) J170_03849 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_03849 PF00512 His Kinase A (phospho-acceptor) domain J170_03849 PF01627 Hpt domain J170_03849 PF00989 PAS fold J170_03849 PF18415 Histidine kinase receptor ArcB trans-membrane domain J170_03849 PF00072 Response regulator receiver domain J170_03853 PF13419 Haloacid dehalogenase-like hydrolase J170_03854 PF01479 S4 domain J170_03854 PF00849 RNA pseudouridylate synthase J170_03855 PF08468 Methyltransferase small domain N-terminal J170_03855 PF05175 Methyltransferase small domain J170_03857 PF07995 Glucose / Sorbosone dehydrogenase J170_03859 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_03859 PF00512 His Kinase A (phospho-acceptor) domain J170_03859 PF00989 PAS fold J170_03863 PF00842 Alanine racemase, C-terminal domain J170_03863 PF01168 Alanine racemase, N-terminal domain J170_03864 PF01266 FAD dependent oxidoreductase J170_03865 PF01037 Lrp/AsnC ligand binding domain J170_03867 PF01641 SelR domain J170_03869 PF01618 MotA/TolQ/ExbB proton channel family J170_03870 PF00691 OmpA family J170_03870 PF13677 Membrane MotB of proton-channel complex MotA/MotB J170_03875 PF01061 ABC-2 type transporter J170_03876 PF00005 ABC transporter J170_03877 PF00999 Sodium/hydrogen exchanger family J170_03878 PF02469 Fasciclin domain J170_03879 PF03167 Uracil DNA glycosylase superfamily J170_03881 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J170_03883 PF03466 LysR substrate binding domain J170_03883 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_03884 PF03358 NADPH-dependent FMN reductase J170_03885 PF00248 Aldo/keto reductase family J170_03887 PF05649 Peptidase family M13 J170_03887 PF01431 Peptidase family M13 J170_03891 PF13520 Amino acid permease J170_03893 PF04397 LytTr DNA-binding domain J170_03893 PF00072 Response regulator receiver domain J170_03894 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_03894 PF02743 Cache domain J170_03894 PF00672 HAMP domain J170_03894 PF06580 Histidine kinase J170_03897 PF05974 Domain of unknown function (DUF892) J170_03898 PF05067 Manganese containing catalase J170_03901 PF01339 CheB methylesterase J170_03901 PF01739 CheR methyltransferase, SAM binding domain J170_03901 PF03705 CheR methyltransferase, all-alpha domain J170_03901 PF08448 PAS fold J170_03904 PF02954 Bacterial regulatory protein, Fis family J170_03904 PF00158 Sigma-54 interaction domain J170_03904 PF00072 Response regulator receiver domain J170_03906 PF01654 Cytochrome bd terminal oxidase subunit I J170_03907 PF02322 Cytochrome bd terminal oxidase subunit II J170_03911 PF16363 GDP-mannose 4,6 dehydratase J170_03913 PF03275 UDP-galactopyranose mutase J170_03915 PF00005 ABC transporter J170_03915 PF00664 ABC transporter transmembrane region J170_03918 PF08240 Alcohol dehydrogenase GroES-like domain J170_03918 PF13823 Alcohol dehydrogenase GroES-associated J170_03918 PF00107 Zinc-binding dehydrogenase J170_03927 PF07715 TonB-dependent Receptor Plug Domain J170_03927 PF00593 TonB dependent receptor J170_03930 PF00005 ABC transporter J170_03932 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_03932 PF03466 LysR substrate binding domain J170_03933 PF01042 Endoribonuclease L-PSP J170_03935 PF01527 Transposase J170_03939 PF00672 HAMP domain J170_03939 PF02203 Tar ligand binding domain homologue J170_03939 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J170_03942 PF03466 LysR substrate binding domain J170_03942 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_03943 PF02525 Flavodoxin-like fold J170_03952 PF00557 Metallopeptidase family M24 J170_03957 PF04545 Sigma-70, region 4 J170_03957 PF04546 Sigma-70, non-essential region J170_03957 PF00140 Sigma-70 factor, region 1.2 J170_03957 PF04542 Sigma-70 region 2 J170_03957 PF03979 Sigma-70 factor, region 1.1 J170_03957 PF04539 Sigma-70 region 3 J170_03958 PF02580 D-Tyr-tRNA(Tyr) deacylase J170_03959 PF03279 Bacterial lipid A biosynthesis acyltransferase J170_03961 PF00925 GTP cyclohydrolase II J170_03965 PF00535 Glycosyl transferase family 2 J170_03968 PF01029 NusB family J170_03968 PF01189 16S rRNA methyltransferase RsmB/F J170_03969 PF02911 Formyl transferase, C-terminal domain J170_03969 PF00551 Formyl transferase J170_03970 PF01327 Polypeptide deformylase J170_03971 PF01476 LysM domain J170_03972 PF02481 DNA recombination-mediator protein A J170_03972 PF17782 DprA winged helix domain J170_03973 PF04361 Protein of unknown function (DUF494) J170_03974 PF07963 Prokaryotic N-terminal methylation motif J170_03974 PF00114 Pilin (bacterial filament) J170_03976 PF13368 Topoisomerase C-terminal repeat J170_03976 PF01131 DNA topoisomerase J170_03976 PF01751 Toprim domain J170_03977 PF01300 Telomere recombination J170_03982 PF01343 Peptidase family S49 J170_03983 PF01554 MatE J170_03987 PF00270 DEAD/DEAH box helicase J170_03987 PF00271 Helicase conserved C-terminal domain J170_03987 PF17764 3′ DNA-binding domain (3′BD) J170_03987 PF18074 Primosomal protein N C-terminal domain J170_03987 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J170_03988 PF13417 Glutathione S-transferase, N-terminal domain J170_03988 PF00043 Glutathione S-transferase, C-terminal domain J170_03991 PF07992 Pyridine nucleotide-disulphide oxidoreductase J170_03992 PF03458 UPF0126 domain J170_03993 PF04545 Sigma-70, region 4 J170_03993 PF04542 Sigma-70 region 2 J170_03994 PF03167 Uracil DNA glycosylase superfamily J170_03995 PF01339 CheB methylesterase J170_03995 PF00072 Response regulator receiver domain J170_03996 PF18075 FtsX extracellular domain J170_03997 PF00005 ABC transporter J170_03998 PF00270 DEAD/DEAH box helicase J170_03998 PF00271 Helicase conserved C-terminal domain J170_03998 PF12300 ATP-dependent RNA helicase RhlB J170_03999 PF00085 Thioredoxin J170_04000 PF07498 Rho termination factor, N-terminal domain J170_04000 PF07497 Rho termination factor, RNA-binding domain J170_04000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J170_04001 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) J170_04002 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_04002 PF03466 LysR substrate binding domain J170_04004 PF03971 Monomeric isocitrate dehydrogenase J170_04007 PF09704 CRISPR-associated protein (Cas_Cas5) J170_04012 PF01867 CRISPR associated protein Cas1 J170_04013 PF09827 CRISPR associated protein Cas2 J170_04015 PF01476 LysM domain J170_04015 PF04972 BON domain J170_04016 PF14489 QueF-like protein J170_04016 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J170_04017 PF01546 Peptidase family M20/M25/M40 J170_04017 PF07687 Peptidase dimerisation domain J170_04018 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J170_04019 PF00873 AcrB/AcrD/AcrF family J170_04020 PF00873 AcrB/AcrD/AcrF family J170_04021 PF07063 Domain of unknown function (DUF1338) J170_04029 PF01427 D-ala-D-ala dipeptidase J170_04030 PF01510 N-acetylmuramoyl-L-alanine amidase J170_04032 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J170_04032 PF13378 Enolase C-terminal domain-like J170_04034 PF13520 Amino acid permease J170_04037 PF05360 yiaA/B two helix domain J170_04038 PF07995 Glucose / Sorbosone dehydrogenase J170_04039 PF00933 Glycosyl hydrolase family 3 N terminal domain J170_04039 PF01915 Glycosyl hydrolase family 3 C-terminal domain J170_04039 PF14310 Fibronectin type III-like domain J170_04040 PF02152 Dihydroneopterin aldolase J170_04041 PF00814 Glycoprotease family J170_04042 PF01165 Ribosomal protein S21 J170_04043 PF09424 Yqey-like protein J170_04044 PF03631 Virulence factor BrkB J170_04045 PF01807 CHC2 zinc finger J170_04045 PF08275 DNA primase catalytic core, N-terminal domain J170_04045 PF10410 DnaB-helicase binding domain of primase J170_04045 PF08278 DNA primase DnaG DnaB-binding J170_04046 PF13593 SBF-like CPA transporter family (DUF4137) J170_04048 PF01040 UbiA prenyltransferase family J170_04053 PF00510 Cytochrome c oxidase subunit III J170_04054 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 J170_04056 PF00115 Cytochrome C and Quinol oxidase polypeptide I J170_04057 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J170_04057 PF02790 Cytochrome C oxidase subunit II, transmembrane domain J170_04059 PF00171 Aldehyde dehydrogenase family J170_04059 PF14850 DNA-binding domain of Proline dehydrogenase J170_04059 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J170_04059 PF01619 Proline dehydrogenase J170_04067 PF00579 tRNA synthetases class I (W and Y) J170_04068 PF04225 Opacity-associated protein A LysM-like domain J170_04068 PF01551 Peptidase family M23 J170_04069 PF03702 Anhydro-N-acetylmuramic acid kinase J170_04071 PF07690 Major Facilitator Superfamily J170_04072 PF03372 Endonuclease/Exonuclease/phosphatase family J170_04073 PF00156 Phosphoribosyl transferase domain J170_04075 PF13614 AAA domain J170_04076 PF02195 ParB-like nuclease domain J170_04076 PF17762 HTH domain found in ParB protein J170_04078 PF01370 NAD dependent epimerase/dehydratase family J170_04079 PF00535 Glycosyl transferase family 2 J170_04082 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J170_04082 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J170_04082 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J170_04082 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J170_04083 PF00692 dUTPase J170_04084 PF02441 Flavoprotein J170_04084 PF04127 DNA / pantothenate metabolism flavoprotein J170_04085 PF04002 RadC-like JAB domain J170_04086 PF05746 DALR anticodon binding domain J170_04086 PF03485 Arginyl tRNA synthetase N terminal domain J170_04086 PF00750 tRNA synthetases class I (R) J170_04089 PF00106 short chain dehydrogenase J170_04090 PF01757 Acyltransferase family J170_04091 PF03033 Glycosyltransferase family 28 N-terminal domain J170_04092 PF00668 Condensation domain J170_04092 PF00550 Phosphopantetheine attachment site J170_04092 PF00975 Thioesterase domain J170_04092 PF13193 AMP-binding enzyme C-terminal domain J170_04092 PF00501 AMP-binding enzyme J170_04093 PF17944 Arginine decarboxylase C-terminal helical extension J170_04093 PF17810 Arginine decarboxylase helical bundle domain J170_04093 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J170_04094 PF17284 Spermidine synthase tetramerisation domain J170_04099 PF00543 Nitrogen regulatory protein P-II J170_04100 PF04380 Membrane fusogenic activity J170_04101 PF01078 Magnesium chelatase, subunit ChlI J170_04101 PF13335 Magnesium chelatase, subunit ChlI C-terminal J170_04107 PF13683 Integrase core domain J170_04107 PF13276 HTH-like domain J170_04111 PF00570 HRDC domain J170_04111 PF13361 UvrD-like helicase C-terminal domain J170_04111 PF00580 UvrD/REP helicase N-terminal domain J170_04114 PF01527 Transposase J170_04115 PF02463 RecF/RecN/SMC N terminal domain J170_04125 PF01078 Magnesium chelatase, subunit ChlI J170_04125 PF13335 Magnesium chelatase, subunit ChlI C-terminal J170_04128 PF12792 CSS motif domain associated with EAL J170_04128 PF00563 EAL domain J170_04129 PF00487 Fatty acid desaturase J170_04130 PF00970 Oxidoreductase FAD-binding domain J170_04130 PF00111 2Fe-2S iron-sulfur cluster binding domain J170_04130 PF00175 Oxidoreductase NAD-binding domain J170_04131 PF00440 Bacterial regulatory proteins, tetR family J170_04137 PF01139 tRNA-splicing ligase RtcB J170_04145 PF01370 NAD dependent epimerase/dehydratase family J170_04145 PF08338 Domain of unknown function (DUF1731) J170_04146 PF00486 Transcriptional regulatory protein, C terminal J170_04146 PF00072 Response regulator receiver domain J170_04147 PF08521 Two-component sensor kinase N-terminal J170_04147 PF00512 His Kinase A (phospho-acceptor) domain J170_04147 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_04151 PF00595 PDZ domain J170_04155 PF01594 AI-2E family transporter J170_04156 PF13419 Haloacid dehalogenase-like hydrolase J170_04157 PF00883 Cytosol aminopeptidase family, catalytic domain J170_04157 PF02789 Cytosol aminopeptidase family, N-terminal domain J170_04159 PF08281 Sigma-70, region 4 J170_04159 PF04542 Sigma-70 region 2 J170_04160 PF00199 Catalase J170_04163 PF00072 Response regulator receiver domain J170_04163 PF00196 Bacterial regulatory proteins, luxR family J170_04164 PF07730 Histidine kinase J170_04165 PF13533 Biotin-lipoyl like J170_04166 PF00005 ABC transporter J170_04170 PF00892 EamA-like transporter family J170_04171 PF00892 EamA-like transporter family J170_04172 PF00892 EamA-like transporter family J170_04175 PF00753 Metallo-beta-lactamase superfamily J170_04176 PF00579 tRNA synthetases class I (W and Y) J170_04177 PF05532 CsbD-like J170_04180 PF00491 Arginase family J170_04185 PF02223 Thymidylate kinase J170_04188 PF03309 Type III pantothenate kinase J170_04189 PF03099 Biotin/lipoate A/B protein ligase family J170_04189 PF08279 HTH domain J170_04189 PF02237 Biotin protein ligase C terminal domain J170_04191 PF06167 Glucose-regulated metallo-peptidase M90 J170_04194 PF00672 HAMP domain J170_04194 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_04194 PF00512 His Kinase A (phospho-acceptor) domain J170_04195 PF00486 Transcriptional regulatory protein, C terminal J170_04195 PF00072 Response regulator receiver domain J170_04197 PF01207 Dihydrouridine synthase (Dus) J170_04200 PF06628 Catalase-related immune-responsive J170_04200 PF00199 Catalase J170_04201 PF06733 DEAD_2 J170_04201 PF13307 Helicase C-terminal domain J170_04204 PF08501 Shikimate dehydrogenase substrate binding domain J170_04204 PF01488 Shikimate / quinate 5-dehydrogenase J170_04204 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J170_04206 PF00175 Oxidoreductase NAD-binding domain J170_04206 PF00258 Flavodoxin J170_04206 PF00667 FAD binding domain J170_04208 PF03466 LysR substrate binding domain J170_04208 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_04210 PF00490 Delta-aminolevulinic acid dehydratase J170_04214 PF00326 Prolyl oligopeptidase family J170_04214 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J170_04215 PF02798 Glutathione S-transferase, N-terminal domain J170_04215 PF00043 Glutathione S-transferase, C-terminal domain J170_04219 PF04820 Tryptophan halogenase J170_04222 PF00005 ABC transporter J170_04224 PF01381 Helix-turn-helix J170_04226 PF01229 Glycosyl hydrolases family 39 J170_04227 PF02583 Metal-sensitive transcriptional repressor J170_04228 PF01545 Cation efflux family J170_04228 PF16916 Dimerisation domain of Zinc Transporter J170_04230 PF00593 TonB dependent receptor J170_04230 PF07715 TonB-dependent Receptor Plug Domain J170_04232 PF01965 DJ-1/PfpI family J170_04232 PF12833 Helix-turn-helix domain J170_04233 PF00175 Oxidoreductase NAD-binding domain J170_04233 PF00970 Oxidoreductase FAD-binding domain J170_04233 PF00111 2Fe-2S iron-sulfur cluster binding domain J170_04234 PF00005 ABC transporter J170_04235 PF01061 ABC-2 type transporter J170_04238 PF02558 Ketopantoate reductase PanE/ApbA J170_04238 PF08546 Ketopantoate reductase PanE/ApbA C terminal J170_04244 PF00268 Ribonucleotide reductase, small chain J170_04245 PF03477 ATP cone domain J170_04245 PF00317 Ribonucleotide reductase, all-alpha domain J170_04245 PF02867 Ribonucleotide reductase, barrel domain J170_04247 PF00583 Acetyltransferase (GNAT) family J170_04247 PF13607 Succinyl-CoA ligase like flavodoxin domain J170_04247 PF13380 CoA binding domain J170_04248 PF03448 MgtE intracellular N domain J170_04248 PF00571 CBS domain J170_04248 PF01769 Divalent cation transporter J170_04249 PF00194 Eukaryotic-type carbonic anhydrase J170_04250 PF02254 TrkA-N domain J170_04250 PF00999 Sodium/hydrogen exchanger family J170_04251 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J170_04251 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J170_04252 PF00723 Glycosyl hydrolases family 15 J170_04255 PF05166 YcgL domain J170_04256 PF00109 Beta-ketoacyl synthase, N-terminal domain J170_04256 PF02801 Beta-ketoacyl synthase, C-terminal domain J170_04258 PF00535 Glycosyl transferase family 2 J170_04269 PF07977 FabA-like domain J170_04270 PF01553 Acyltransferase J170_04272 PF00550 Phosphopantetheine attachment site J170_04273 PF04820 Tryptophan halogenase J170_04277 PF00326 Prolyl oligopeptidase family J170_04277 PF07676 WD40-like Beta Propeller Repeat J170_04280 PF01218 Coproporphyrinogen III oxidase J170_04281 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J170_04281 PF01367 5'-3' exonuclease, C-terminal SAM fold J170_04281 PF00476 DNA polymerase family A J170_04281 PF01612 3'-5' exonuclease J170_04287 PF03793 PASTA domain J170_04287 PF00069 Protein kinase domain J170_04295 PF04717 Type VI secretion system, phage-baseplate injector J170_04298 PF00069 Protein kinase domain J170_04298 PF03793 PASTA domain J170_04300 PF04542 Sigma-70 region 2 J170_04300 PF08281 Sigma-70, region 4 J170_04303 PF00328 Histidine phosphatase superfamily (branch 2) J170_04310 PF07724 AAA domain (Cdc48 subfamily) J170_04310 PF10431 C-terminal, D2-small domain, of ClpB protein J170_04310 PF17871 AAA lid domain J170_04310 PF00004 ATPase family associated with various cellular activities (AAA) J170_04315 PF05638 Type VI secretion system effector, Hcp J170_04320 PF14602 Hexapeptide repeat of succinyl-transferase J170_04320 PF12464 Maltose acetyltransferase J170_04321 PF00580 UvrD/REP helicase N-terminal domain J170_04321 PF13361 UvrD-like helicase C-terminal domain J170_04323 PF13091 PLD-like domain J170_04323 PF13396 Phospholipase_D-nuclease N-terminal J170_04324 PF03466 LysR substrate binding domain J170_04324 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_04325 PF03737 Aldolase/RraA J170_04326 PF04303 PrpF protein J170_04327 PF04909 Amidohydrolase J170_04328 PF00471 Ribosomal protein L33 J170_04329 PF00830 Ribosomal L28 family J170_04330 PF00873 AcrB/AcrD/AcrF family J170_04331 PF13533 Biotin-lipoyl like J170_04335 PF02527 rRNA small subunit methyltransferase G J170_04336 PF09423 PhoD-like phosphatase J170_04336 PF16655 PhoD-like phosphatase, N-terminal domain J170_04338 PF16655 PhoD-like phosphatase, N-terminal domain J170_04338 PF09423 PhoD-like phosphatase J170_04339 PF01648 4'-phosphopantetheinyl transferase superfamily J170_04340 PF04226 Transglycosylase associated protein J170_04342 PF03372 Endonuclease/Exonuclease/phosphatase family J170_04344 PF00480 ROK family J170_04346 PF09312 SurA N-terminal domain J170_04348 PF00474 Sodium:solute symporter family J170_04349 PF04341 Protein of unknown function, DUF485 J170_04351 PF13193 AMP-binding enzyme C-terminal domain J170_04351 PF16177 Acetyl-coenzyme A synthetase N-terminus J170_04351 PF00501 AMP-binding enzyme J170_04352 PF00072 Response regulator receiver domain J170_04352 PF00196 Bacterial regulatory proteins, luxR family J170_04357 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J170_04357 PF04616 Glycosyl hydrolases family 43 J170_04358 PF00248 Aldo/keto reductase family J170_04361 PF01557 Fumarylacetoacetate (FAA) hydrolase family J170_04362 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J170_04362 PF13378 Enolase C-terminal domain-like J170_04364 PF05336 L-rhamnose mutarotase J170_04365 PF07690 Major Facilitator Superfamily J170_04366 PF09339 IclR helix-turn-helix domain J170_04366 PF01614 Bacterial transcriptional regulator J170_04367 PF02659 Putative manganese efflux pump J170_04368 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_04368 PF00512 His Kinase A (phospho-acceptor) domain J170_04370 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J170_04370 PF06165 Glycosyltransferase family 36 J170_04373 PF13360 PQQ-like domain J170_04373 PF13570 PQQ-like domain J170_04373 PF01011 PQQ enzyme repeat J170_04377 PF04357 TamB, inner membrane protein subunit of TAM complex J170_04378 PF17243 POTRA domain TamA domain 1 J170_04378 PF01103 Surface antigen J170_04381 PF01527 Transposase J170_04383 PF00664 ABC transporter transmembrane region J170_04383 PF00005 ABC transporter J170_04383 PF03412 Peptidase C39 family J170_04385 PF05746 DALR anticodon binding domain J170_04385 PF02092 Glycyl-tRNA synthetase beta subunit J170_04386 PF02091 Glycyl-tRNA synthetase alpha subunit J170_04387 PF00437 Type II/IV secretion system protein J170_04387 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J170_04389 PF00958 GMP synthase C terminal domain J170_04389 PF00117 Glutamine amidotransferase class-I J170_04391 PF00902 Sec-independent protein translocase protein (TatC) J170_04392 PF02416 mttA/Hcf106 family J170_04393 PF02416 mttA/Hcf106 family J170_04395 PF00762 Ferrochelatase J170_04396 PF12697 Alpha/beta hydrolase family J170_04398 PF04381 Putative exonuclease, RdgC J170_04399 PF01171 PP-loop family J170_04401 PF00356 Bacterial regulatory proteins, lacI family J170_04402 PF07477 Glycosyl hydrolase family 67 C-terminus J170_04402 PF03648 Glycosyl hydrolase family 67 N-terminus J170_04402 PF07488 Glycosyl hydrolase family 67 middle domain J170_04404 PF13378 Enolase C-terminal domain-like J170_04404 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J170_04405 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J170_04405 PF04616 Glycosyl hydrolases family 43 J170_04406 PF07691 PA14 domain J170_04406 PF01915 Glycosyl hydrolase family 3 C-terminal domain J170_04406 PF14310 Fibronectin type III-like domain J170_04406 PF00933 Glycosyl hydrolase family 3 N terminal domain J170_04407 PF08125 Mannitol dehydrogenase C-terminal domain J170_04407 PF01232 Mannitol dehydrogenase Rossmann domain J170_04412 PF00171 Aldehyde dehydrogenase family J170_04415 PF00202 Aminotransferase class-III J170_04416 PF00202 Aminotransferase class-III J170_04418 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J170_04418 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J170_04421 PF08450 SMP-30/Gluconolactonase/LRE-like region J170_04422 PF00331 Glycosyl hydrolase family 10 J170_04423 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J170_04423 PF02837 Glycosyl hydrolases family 2, sugar binding domain J170_04423 PF16355 Domain of unknown function (DUF4982) J170_04423 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J170_04423 PF00703 Glycosyl hydrolases family 2 J170_04424 PF02614 Glucuronate isomerase J170_04425 PF03422 Carbohydrate binding module (family 6) J170_04425 PF00331 Glycosyl hydrolase family 10 J170_04425 PF00553 Cellulose binding domain J170_04427 PF00553 Cellulose binding domain J170_04427 PF03422 Carbohydrate binding module (family 6) J170_04427 PF00331 Glycosyl hydrolase family 10 J170_04431 PF04616 Glycosyl hydrolases family 43 J170_04441 PF00698 Acyl transferase domain J170_04441 PF08659 KR domain J170_04441 PF08240 Alcohol dehydrogenase GroES-like domain J170_04441 PF00107 Zinc-binding dehydrogenase J170_04441 PF14765 Polyketide synthase dehydratase J170_04441 PF00550 Phosphopantetheine attachment site J170_04441 PF16197 Ketoacyl-synthetase C-terminal extension J170_04441 PF00109 Beta-ketoacyl synthase, N-terminal domain J170_04441 PF02801 Beta-ketoacyl synthase, C-terminal domain J170_04442 PF01553 Acyltransferase J170_04444 PF00356 Bacterial regulatory proteins, lacI family J170_04447 PF04820 Tryptophan halogenase J170_04448 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J170_04449 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) J170_04451 PF04337 Protein of unknown function, DUF480 J170_04454 PF00580 UvrD/REP helicase N-terminal domain J170_04454 PF13361 UvrD-like helicase C-terminal domain J170_04455 PF00265 Thymidine kinase J170_04456 PF01590 GAF domain J170_04456 PF00360 Phytochrome region J170_04456 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J170_04456 PF00512 His Kinase A (phospho-acceptor) domain J170_04456 PF08446 PAS fold J170_04457 PF04349 Periplasmic glucan biosynthesis protein, MdoG J170_04459 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J170_04459 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J170_04459 PF06827 Zinc finger found in FPG and IleRS J170_04466 PF03594 Benzoate membrane transport protein J170_04467 PF08446 PAS fold J170_04467 PF13426 PAS domain J170_04467 PF00360 Phytochrome region J170_04467 PF01590 GAF domain J170_04468 PF01126 Heme oxygenase J170_04469 PF07690 Major Facilitator Superfamily J170_04470 PF01263 Aldose 1-epimerase J170_04472 PF02810 SEC-C motif J170_04473 PF01925 Sulfite exporter TauE/SafE J170_04477 PF01227 GTP cyclohydrolase I J170_04479 PF07869 Protein of unknown function (DUF1656) J170_04480 PF00529 HlyD membrane-fusion protein of T1SS J170_04480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J170_04481 PF02321 Outer membrane efflux protein J170_04482 PF04632 Fusaric acid resistance protein family J170_04483 PF00083 Sugar (and other) transporter J170_04484 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family J170_04485 PF13396 Phospholipase_D-nuclease N-terminal J170_04485 PF13091 PLD-like domain J170_04490 PF01850 PIN domain J170_04495 PF00849 RNA pseudouridylate synthase J170_04497 PF01527 Transposase J170_04501 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J170_04501 PF00289 Biotin carboxylase, N-terminal domain J170_04501 PF02785 Biotin carboxylase C-terminal domain J170_04502 PF01425 Amidase J170_04509 PF13538 UvrD-like helicase C-terminal domain J170_04512 PF00580 UvrD/REP helicase N-terminal domain J170_04512 PF12705 PD-(D/E)XK nuclease superfamily J170_04512 PF13361 UvrD-like helicase C-terminal domain J170_04513 PF17946 RecC C-terminal domain J170_04515 PF00005 ABC transporter J170_04516 PF02405 Permease MlaE J170_04517 PF02470 MlaD protein J170_04518 PF05494 MlaC protein J170_04520 PF04333 MlaA lipoprotein J170_04522 PF00255 Glutathione peroxidase J170_04524 PF02646 RmuC family J170_04525 PF08240 Alcohol dehydrogenase GroES-like domain J170_04525 PF00107 Zinc-binding dehydrogenase J170_04526 PF03466 LysR substrate binding domain J170_04526 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J170_04528 PF00043 Glutathione S-transferase, C-terminal domain J170_04528 PF13417 Glutathione S-transferase, N-terminal domain J170_04530 PF13520 Amino acid permease J170_04531 PF07971 Glycosyl hydrolase family 92 J170_04531 PF17678 Glycosyl hydrolase family 92 N-terminal domain J170_04532 PF10947 Protein of unknown function (DUF2628) J170_04533 PF00990 Diguanylate cyclase, GGDEF domain J170_04534 PF13556 PucR C-terminal helix-turn-helix domain J170_04534 PF05651 Putative sugar diacid recognition J170_04534 PF17853 GGDEF-like domain J170_04535 PF02595 Glycerate kinase family J170_04536 PF07690 Major Facilitator Superfamily J170_04539 PF17785 PUA-like domain J170_04539 PF10672 S-adenosylmethionine-dependent methyltransferase J170_04542 PF01694 Rhomboid family J170_04543 PF03009 Glycerophosphoryl diester phosphodiesterase family J170_04545 PF01569 PAP2 superfamily J170_04546 PF01926 50S ribosome-binding GTPase J170_04546 PF12631 MnmE helical domain J170_04546 PF10396 GTP-binding protein TrmE N-terminus J170_04547 PF01522 Polysaccharide deacetylase J170_04548 PF02096 60Kd inner membrane protein J170_04548 PF14849 YidC periplasmic domain J170_04549 PF00825 Ribonuclease P J170_04550 PF00468 Ribosomal protein L34