locus-tag class description XCQ_00005 PF00308 Bacterial dnaA protein XCQ_00005 PF08299 Bacterial dnaA protein helix-turn-helix XCQ_00005 PF11638 DnaA N-terminal domain XCQ_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain XCQ_00010 PF02767 DNA polymerase III beta subunit, central domain XCQ_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain XCQ_00015 PF02463 RecF/RecN/SMC N terminal domain XCQ_00020 PF00204 DNA gyrase B XCQ_00020 PF00986 DNA gyrase B subunit, carboxyl terminus XCQ_00020 PF18053 DNA gyrase B subunit insert domain XCQ_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_00020 PF01751 Toprim domain XCQ_00030 PF01435 Peptidase family M48 XCQ_00040 PF03544 Gram-negative bacterial TonB protein C-terminal XCQ_00045 PF01618 MotA/TolQ/ExbB proton channel family XCQ_00050 PF02472 Biopolymer transport protein ExbD/TolR XCQ_00055 PF02472 Biopolymer transport protein ExbD/TolR XCQ_00060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ XCQ_00070 PF13091 PLD-like domain XCQ_00070 PF13396 Phospholipase_D-nuclease N-terminal XCQ_00085 PF04055 Radical SAM superfamily XCQ_00095 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) XCQ_00110 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XCQ_00110 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XCQ_00115 PF13180 PDZ domain XCQ_00115 PF03572 Peptidase family S41 XCQ_00120 PF01551 Peptidase family M23 XCQ_00130 PF04389 Peptidase family M28 XCQ_00140 PF00150 Cellulase (glycosyl hydrolase family 5) XCQ_00150 PF00150 Cellulase (glycosyl hydrolase family 5) XCQ_00160 PF00150 Cellulase (glycosyl hydrolase family 5) XCQ_00165 PF08240 Alcohol dehydrogenase GroES-like domain XCQ_00165 PF00107 Zinc-binding dehydrogenase XCQ_00170 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster XCQ_00170 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCQ_00175 PF00310 Glutamine amidotransferases class-II XCQ_00175 PF04898 Glutamate synthase central domain XCQ_00175 PF01645 Conserved region in glutamate synthase XCQ_00175 PF01493 GXGXG motif XCQ_00200 PF01804 Penicillin amidase XCQ_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_00210 PF03466 LysR substrate binding domain XCQ_00230 PF02397 Bacterial sugar transferase XCQ_00235 PF02350 UDP-N-acetylglucosamine 2-epimerase XCQ_00245 PF03808 Glycosyl transferase WecB/TagA/CpsF family XCQ_00250 PF13439 Glycosyltransferase Family 4 XCQ_00250 PF00534 Glycosyl transferases group 1 XCQ_00270 PF00733 Asparagine synthase XCQ_00270 PF13537 Glutamine amidotransferase domain XCQ_00285 PF16363 GDP-mannose 4,6 dehydratase XCQ_00300 PF00664 ABC transporter transmembrane region XCQ_00300 PF00005 ABC transporter XCQ_00310 PF00733 Asparagine synthase XCQ_00310 PF13537 Glutamine amidotransferase domain XCQ_00330 PF07475 HPr Serine kinase C-terminal domain XCQ_00330 PF02603 HPr Serine kinase N terminus XCQ_00335 PF00685 Sulfotransferase domain XCQ_00415 PF00270 DEAD/DEAH box helicase XCQ_00415 PF09369 Domain of unknown function (DUF1998) XCQ_00415 PF00271 Helicase conserved C-terminal domain XCQ_00420 PF03006 Haemolysin-III related XCQ_00440 PF00106 short chain dehydrogenase XCQ_00450 PF03466 LysR substrate binding domain XCQ_00450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_00465 PF02525 Flavodoxin-like fold XCQ_00520 PF05532 CsbD-like XCQ_00540 PF16485 Protealysin propeptide XCQ_00540 PF01447 Thermolysin metallopeptidase, catalytic domain XCQ_00540 PF02868 Thermolysin metallopeptidase, alpha-helical domain XCQ_00550 PF13344 Haloacid dehalogenase-like hydrolase XCQ_00550 PF00293 NUDIX domain XCQ_00565 PF00085 Thioredoxin XCQ_00570 PF00083 Sugar (and other) transporter XCQ_00570 PF08946 Osmosensory transporter coiled coil XCQ_00610 PF17863 AAA lid domain XCQ_00610 PF07726 ATPase family associated with various cellular activities (AAA) XCQ_00640 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain XCQ_00645 PF00155 Aminotransferase class I and II XCQ_00650 PF00593 TonB dependent receptor XCQ_00650 PF07715 TonB-dependent Receptor Plug Domain XCQ_00660 PF07883 Cupin domain XCQ_00665 PF00171 Aldehyde dehydrogenase family XCQ_00685 PF02735 Ku70/Ku80 beta-barrel domain XCQ_00690 PF01070 FMN-dependent dehydrogenase XCQ_00695 PF00144 Beta-lactamase XCQ_00700 PF07730 Histidine kinase XCQ_00705 PF00196 Bacterial regulatory proteins, luxR family XCQ_00705 PF00072 Response regulator receiver domain XCQ_00725 PF00486 Transcriptional regulatory protein, C terminal XCQ_00725 PF18500 CadC C-terminal domain 1 XCQ_00730 PF07055 Enoyl reductase FAD binding domain XCQ_00730 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase XCQ_00730 PF12241 Trans-2-enoyl-CoA reductase catalytic region XCQ_00740 PF00294 pfkB family carbohydrate kinase XCQ_00800 PF00128 Alpha amylase, catalytic domain XCQ_00800 PF11896 Domain of unknown function (DUF3416) XCQ_00805 PF16657 Maltogenic Amylase, C-terminal domain XCQ_00805 PF00128 Alpha amylase, catalytic domain XCQ_00810 PF02806 Alpha amylase, C-terminal all-beta domain XCQ_00810 PF00128 Alpha amylase, catalytic domain XCQ_00810 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCQ_00820 PF00248 Aldo/keto reductase family XCQ_00825 PF00135 Carboxylesterase family XCQ_00830 PF13472 GDSL-like Lipase/Acylhydrolase family XCQ_00830 PF07859 alpha/beta hydrolase fold XCQ_00840 PF03480 Bacterial extracellular solute-binding protein, family 7 XCQ_00850 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component XCQ_00855 PF04616 Glycosyl hydrolases family 43 XCQ_00855 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XCQ_00860 PF00356 Bacterial regulatory proteins, lacI family XCQ_00865 PF04962 KduI/IolB family XCQ_00880 PF00657 GDSL-like Lipase/Acylhydrolase XCQ_00895 PF00351 Biopterin-dependent aromatic amino acid hydroxylase XCQ_00900 PF01037 Lrp/AsnC ligand binding domain XCQ_00905 PF07660 Secretin and TonB N terminus short domain XCQ_00905 PF00593 TonB dependent receptor XCQ_00905 PF07715 TonB-dependent Receptor Plug Domain XCQ_00910 PF01734 Patatin-like phospholipase XCQ_00920 PF00005 ABC transporter XCQ_00935 PF00005 ABC transporter XCQ_00940 PF00528 Binding-protein-dependent transport system inner membrane component XCQ_00950 PF12867 DinB superfamily XCQ_00950 PF03781 Sulfatase-modifying factor enzyme 1 XCQ_00970 PF01381 Helix-turn-helix XCQ_00990 PF10609 NUBPL iron-transfer P-loop NTPase XCQ_00990 PF01883 Iron-sulfur cluster assembly protein XCQ_01005 PF13091 PLD-like domain XCQ_01010 PF03061 Thioesterase superfamily XCQ_01040 PF00107 Zinc-binding dehydrogenase XCQ_01040 PF08240 Alcohol dehydrogenase GroES-like domain XCQ_01050 PF02673 Bacitracin resistance protein BacA XCQ_01055 PF00120 Glutamine synthetase, catalytic domain XCQ_01055 PF03951 Glutamine synthetase, beta-Grasp domain XCQ_01060 PF00543 Nitrogen regulatory protein P-II XCQ_01065 PF00909 Ammonium Transporter Family XCQ_01070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_01070 PF00512 His Kinase A (phospho-acceptor) domain XCQ_01070 PF00989 PAS fold XCQ_01075 PF02954 Bacterial regulatory protein, Fis family XCQ_01075 PF00072 Response regulator receiver domain XCQ_01075 PF00158 Sigma-54 interaction domain XCQ_01080 PF00080 Copper/zinc superoxide dismutase (SODC) XCQ_01085 PF00080 Copper/zinc superoxide dismutase (SODC) XCQ_01095 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XCQ_01105 PF02803 Thiolase, C-terminal domain XCQ_01105 PF00108 Thiolase, N-terminal domain XCQ_01140 PF00581 Rhodanese-like domain XCQ_01145 PF02556 Preprotein translocase subunit SecB XCQ_01150 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XCQ_01150 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus XCQ_01165 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XCQ_01165 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XCQ_01165 PF00205 Thiamine pyrophosphate enzyme, central domain XCQ_01170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_01175 PF00158 Sigma-54 interaction domain XCQ_01175 PF00072 Response regulator receiver domain XCQ_01175 PF02954 Bacterial regulatory protein, Fis family XCQ_01190 PF07690 Major Facilitator Superfamily XCQ_01195 PF00588 SpoU rRNA Methylase family XCQ_01210 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XCQ_01210 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XCQ_01215 PF13784 Fic/DOC family N-terminal XCQ_01215 PF02661 Fic/DOC family XCQ_01220 PF00561 alpha/beta hydrolase fold XCQ_01225 PF03692 Putative zinc- or iron-chelating domain XCQ_01230 PF00501 AMP-binding enzyme XCQ_01235 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XCQ_01260 PF03109 ABC1 family XCQ_01270 PF00849 RNA pseudouridylate synthase XCQ_01280 PF00472 RF-1 domain XCQ_01290 PF01112 Asparaginase XCQ_01295 PF01432 Peptidase family M3 XCQ_01300 PF12706 Beta-lactamase superfamily domain XCQ_01320 PF12833 Helix-turn-helix domain XCQ_01325 PF00999 Sodium/hydrogen exchanger family XCQ_01330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_01330 PF03466 LysR substrate binding domain XCQ_01335 PF01274 Malate synthase XCQ_01340 PF00463 Isocitrate lyase family XCQ_01345 PF00990 Diguanylate cyclase, GGDEF domain XCQ_01365 PF00326 Prolyl oligopeptidase family XCQ_01370 PF18140 Propionyl-coenzyme A carboxylase BT domain XCQ_01370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XCQ_01370 PF02785 Biotin carboxylase C-terminal domain XCQ_01370 PF00364 Biotin-requiring enzyme XCQ_01370 PF00289 Biotin carboxylase, N-terminal domain XCQ_01375 PF01039 Carboxyl transferase domain XCQ_01380 PF02770 Acyl-CoA dehydrogenase, middle domain XCQ_01380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCQ_01380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCQ_01435 PF02492 CobW/HypB/UreG, nucleotide-binding domain XCQ_01435 PF07683 Cobalamin synthesis protein cobW C-terminal domain XCQ_01455 PF03969 AFG1-like ATPase XCQ_01460 PF01047 MarR family XCQ_01465 PF02566 OsmC-like protein XCQ_01490 PF00107 Zinc-binding dehydrogenase XCQ_01490 PF16884 N-terminal domain of oxidoreductase XCQ_01495 PF00248 Aldo/keto reductase family XCQ_01505 PF00849 RNA pseudouridylate synthase XCQ_01510 PF00593 TonB dependent receptor XCQ_01520 PF08482 ATP-dependent helicase C-terminal XCQ_01520 PF04408 Helicase associated domain (HA2) XCQ_01520 PF00270 DEAD/DEAH box helicase XCQ_01520 PF00271 Helicase conserved C-terminal domain XCQ_01525 PF07308 Protein of unknown function (DUF1456) XCQ_01530 PF00576 HIUase/Transthyretin family XCQ_01535 PF13454 FAD-NAD(P)-binding XCQ_01540 PF09349 OHCU decarboxylase XCQ_01540 PF01014 Uricase XCQ_01555 PF00266 Aminotransferase class-V XCQ_01560 PF07687 Peptidase dimerisation domain XCQ_01560 PF01546 Peptidase family M20/M25/M40 XCQ_01565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_01565 PF03466 LysR substrate binding domain XCQ_01570 PF07690 Major Facilitator Superfamily XCQ_01585 PF01425 Amidase XCQ_01590 PF01156 Inosine-uridine preferring nucleoside hydrolase XCQ_01600 PF00860 Permease family XCQ_01605 PF00111 2Fe-2S iron-sulfur cluster binding domain XCQ_01610 PF00355 Rieske [2Fe-2S] domain XCQ_01615 PF03466 LysR substrate binding domain XCQ_01615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_01620 PF01026 TatD related DNase XCQ_01635 PF03466 LysR substrate binding domain XCQ_01635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_01640 PF07690 Major Facilitator Superfamily XCQ_01655 PF02146 Sir2 family XCQ_01660 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XCQ_01665 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XCQ_01665 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XCQ_01675 PF00551 Formyl transferase XCQ_01680 PF00486 Transcriptional regulatory protein, C terminal XCQ_01680 PF00072 Response regulator receiver domain XCQ_01685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_01685 PF00512 His Kinase A (phospho-acceptor) domain XCQ_01685 PF00672 HAMP domain XCQ_01690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCQ_01690 PF00529 HlyD membrane-fusion protein of T1SS XCQ_01695 PF00873 AcrB/AcrD/AcrF family XCQ_01700 PF02321 Outer membrane efflux protein XCQ_01710 PF02219 Methylenetetrahydrofolate reductase XCQ_01715 PF02677 Epoxyqueuosine reductase QueH XCQ_01720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_01720 PF03466 LysR substrate binding domain XCQ_01725 PF03358 NADPH-dependent FMN reductase XCQ_01735 PF08267 Cobalamin-independent synthase, N-terminal domain XCQ_01735 PF01717 Cobalamin-independent synthase, Catalytic domain XCQ_01740 PF03812 2-keto-3-deoxygluconate permease XCQ_01750 PF05368 NmrA-like family XCQ_01755 PF01638 HxlR-like helix-turn-helix XCQ_01780 PF13495 Phage integrase, N-terminal SAM-like domain XCQ_01780 PF00589 Phage integrase family XCQ_01785 PF00920 Dehydratase family XCQ_01795 PF03692 Putative zinc- or iron-chelating domain XCQ_01800 PF00132 Bacterial transferase hexapeptide (six repeats) XCQ_01810 PF07690 Major Facilitator Superfamily XCQ_01815 PF11871 Domain of unknown function (DUF3391) XCQ_01815 PF01966 HD domain XCQ_01835 PF00171 Aldehyde dehydrogenase family XCQ_01845 PF01494 FAD binding domain XCQ_01855 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XCQ_01855 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XCQ_01860 PF00230 Major intrinsic protein XCQ_01865 PF01266 FAD dependent oxidoreductase XCQ_01865 PF16901 C-terminal domain of alpha-glycerophosphate oxidase XCQ_01870 PF00455 DeoR C terminal sensor domain XCQ_01870 PF08220 DeoR-like helix-turn-helix domain XCQ_01875 PF00970 Oxidoreductase FAD-binding domain XCQ_01875 PF00111 2Fe-2S iron-sulfur cluster binding domain XCQ_01880 PF00355 Rieske [2Fe-2S] domain XCQ_01885 PF01144 Coenzyme A transferase XCQ_01890 PF01144 Coenzyme A transferase XCQ_01895 PF00108 Thiolase, N-terminal domain XCQ_01895 PF02803 Thiolase, C-terminal domain XCQ_01900 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal XCQ_01900 PF00775 Dioxygenase XCQ_01910 PF00206 Lyase XCQ_01910 PF10397 Adenylosuccinate lyase C-terminus XCQ_01915 PF12146 Serine aminopeptidase, S33 XCQ_01920 PF02627 Carboxymuconolactone decarboxylase family XCQ_01930 PF09339 IclR helix-turn-helix domain XCQ_01930 PF01614 Bacterial transcriptional regulator XCQ_01940 PF07859 alpha/beta hydrolase fold XCQ_01945 PF10677 Protein of unknown function (DUF2490) XCQ_01950 PF01134 Glucose inhibited division protein A XCQ_01950 PF13932 GidA associated domain XCQ_01960 PF00291 Pyridoxal-phosphate dependent enzyme XCQ_01980 PF13649 Methyltransferase domain XCQ_01990 PF12697 Alpha/beta hydrolase family XCQ_02000 PF00155 Aminotransferase class I and II XCQ_02005 PF06968 Biotin and Thiamin Synthesis associated domain XCQ_02005 PF04055 Radical SAM superfamily XCQ_02015 PF01040 UbiA prenyltransferase family XCQ_02035 PF05819 NolX protein XCQ_02075 PF01313 Bacterial export proteins, family 3 XCQ_02080 PF00813 FliP family XCQ_02095 PF00771 FHIPEP family XCQ_02100 PF01312 FlhB HrpN YscU SpaS Family XCQ_02115 PF01514 Secretory protein of YscJ/FliF family XCQ_02130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCQ_02130 PF02874 ATP synthase alpha/beta family, beta-barrel domain XCQ_02130 PF18269 T3SS EscN ATPase C-terminal domain XCQ_02140 PF01311 Bacterial export proteins, family 1 XCQ_02145 PF00263 Bacterial type II and III secretion system protein XCQ_02145 PF03958 Bacterial type II/III secretion system short domain XCQ_02155 PF01464 Transglycosylase SLT domain XCQ_02170 PF00924 Mechanosensitive ion channel XCQ_02170 PF12795 Mechanosensitive ion channel porin domain XCQ_02170 PF12794 Mechanosensitive ion channel inner membrane domain 1 XCQ_02175 PF00884 Sulfatase XCQ_02180 PF03109 ABC1 family XCQ_02185 PF05661 Protein of unknown function (DUF808) XCQ_02190 PF00990 Diguanylate cyclase, GGDEF domain XCQ_02195 PF00534 Glycosyl transferases group 1 XCQ_02195 PF08323 Starch synthase catalytic domain XCQ_02200 PF00128 Alpha amylase, catalytic domain XCQ_02200 PF02806 Alpha amylase, C-terminal all-beta domain XCQ_02200 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCQ_02205 PF00128 Alpha amylase, catalytic domain XCQ_02205 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCQ_02205 PF11941 Domain of unknown function (DUF3459) XCQ_02210 PF02446 4-alpha-glucanotransferase XCQ_02215 PF00128 Alpha amylase, catalytic domain XCQ_02225 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCQ_02225 PF00128 Alpha amylase, catalytic domain XCQ_02230 PF13460 NAD(P)H-binding XCQ_02245 PF06903 VirK protein XCQ_02250 PF02321 Outer membrane efflux protein XCQ_02265 PF00873 AcrB/AcrD/AcrF family XCQ_02280 PF00271 Helicase conserved C-terminal domain XCQ_02280 PF00270 DEAD/DEAH box helicase XCQ_02285 PF02817 e3 binding domain XCQ_02285 PF00364 Biotin-requiring enzyme XCQ_02285 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XCQ_02295 PF02779 Transketolase, pyrimidine binding domain XCQ_02295 PF02780 Transketolase, C-terminal domain XCQ_02300 PF00676 Dehydrogenase E1 component XCQ_02310 PF03301 Tryptophan 2,3-dioxygenase XCQ_02315 PF00854 POT family XCQ_02325 PF01047 MarR family XCQ_02330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XCQ_02335 PF04480 Protein of unknown function (DUF559) XCQ_02340 PF04209 homogentisate 1,2-dioxygenase XCQ_02360 PF03334 Na+/H+ antiporter subunit XCQ_02365 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) XCQ_02375 PF00361 Proton-conducting membrane transporter XCQ_02380 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XCQ_02385 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XCQ_02385 PF00361 Proton-conducting membrane transporter XCQ_02385 PF13244 Domain of unknown function (DUF4040) XCQ_02385 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter XCQ_02405 PF00182 Chitinase class I XCQ_02425 PF01259 SAICAR synthetase XCQ_02430 PF05099 Tellurite resistance protein TerB XCQ_02430 PF00226 DnaJ domain XCQ_02440 PF00834 Ribulose-phosphate 3 epimerase family XCQ_02445 PF00583 Acetyltransferase (GNAT) family XCQ_02450 PF00781 Diacylglycerol kinase catalytic domain XCQ_02455 PF04715 Anthranilate synthase component I, N terminal region XCQ_02455 PF00425 chorismate binding enzyme XCQ_02465 PF00117 Glutamine amidotransferase class-I XCQ_02475 PF02885 Glycosyl transferase family, helical bundle domain XCQ_02475 PF00591 Glycosyl transferase family, a/b domain XCQ_02480 PF00218 Indole-3-glycerol phosphate synthase XCQ_02490 PF00027 Cyclic nucleotide-binding domain XCQ_02490 PF00325 Bacterial regulatory proteins, crp family XCQ_02495 PF02675 S-adenosylmethionine decarboxylase XCQ_02500 PF00893 Small Multidrug Resistance protein XCQ_02505 PF03232 Ubiquinone biosynthesis protein COQ7 XCQ_02510 PF00572 Ribosomal protein L13 XCQ_02515 PF00380 Ribosomal protein S9/S16 XCQ_02530 PF00293 NUDIX domain XCQ_02540 PF00210 Ferritin-like domain XCQ_02545 PF00672 HAMP domain XCQ_02545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_02545 PF00512 His Kinase A (phospho-acceptor) domain XCQ_02545 PF01627 Hpt domain XCQ_02545 PF00072 Response regulator receiver domain XCQ_02545 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XCQ_02550 PF00486 Transcriptional regulatory protein, C terminal XCQ_02550 PF00072 Response regulator receiver domain XCQ_02570 PF01521 Iron-sulphur cluster biosynthesis XCQ_02585 PF00293 NUDIX domain XCQ_02585 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain XCQ_02585 PF09297 NADH pyrophosphatase zinc ribbon domain XCQ_02590 PF03186 CobD/Cbib protein XCQ_02590 PF17113 Regulatory signalling modulator protein AmpE XCQ_02605 PF07690 Major Facilitator Superfamily XCQ_02610 PF03466 LysR substrate binding domain XCQ_02610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_02615 PF07690 Major Facilitator Superfamily XCQ_02620 PF12805 FUSC-like inner membrane protein yccS XCQ_02630 PF02844 Phosphoribosylglycinamide synthetase, N domain XCQ_02630 PF02843 Phosphoribosylglycinamide synthetase, C domain XCQ_02630 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain XCQ_02640 PF01808 AICARFT/IMPCHase bienzyme XCQ_02640 PF02142 MGS-like domain XCQ_02645 PF01066 CDP-alcohol phosphatidyltransferase XCQ_02650 PF12146 Serine aminopeptidase, S33 XCQ_02650 PF12147 Putative methyltransferase XCQ_02655 PF00782 Dual specificity phosphatase, catalytic domain XCQ_02685 PF02954 Bacterial regulatory protein, Fis family XCQ_02695 PF01381 Helix-turn-helix XCQ_02720 PF02785 Biotin carboxylase C-terminal domain XCQ_02720 PF00289 Biotin carboxylase, N-terminal domain XCQ_02720 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XCQ_02730 PF00364 Biotin-requiring enzyme XCQ_02735 PF01220 Dehydroquinase class II XCQ_02740 PF11412 Disulphide bond corrector protein DsbC XCQ_02740 PF02683 Cytochrome C biogenesis protein transmembrane region XCQ_02745 PF03091 CutA1 divalent ion tolerance protein XCQ_02760 PF01852 START domain XCQ_02770 PF00106 short chain dehydrogenase XCQ_02775 PF04231 Endonuclease I XCQ_02785 PF00166 Chaperonin 10 Kd subunit XCQ_02790 PF00118 TCP-1/cpn60 chaperonin family XCQ_02800 PF07715 TonB-dependent Receptor Plug Domain XCQ_02800 PF00593 TonB dependent receptor XCQ_02805 PF00793 DAHP synthetase I family XCQ_02820 PF08450 SMP-30/Gluconolactonase/LRE-like region XCQ_02830 PF03710 Glutamate-ammonia ligase adenylyltransferase XCQ_02830 PF08335 GlnD PII-uridylyltransferase XCQ_02835 PF02592 Putative vitamin uptake transporter XCQ_02850 PF00881 Nitroreductase family XCQ_02855 PF04264 YceI-like domain XCQ_02880 PF16957 Malonate decarboxylase, alpha subunit, transporter XCQ_02885 PF06857 Malonate decarboxylase delta subunit (MdcD) XCQ_02890 PF01039 Carboxyl transferase domain XCQ_02900 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG XCQ_02905 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase XCQ_02910 PF00698 Acyl transferase domain XCQ_02920 PF00392 Bacterial regulatory proteins, gntR family XCQ_02920 PF07729 FCD domain XCQ_02925 PF13419 Haloacid dehalogenase-like hydrolase XCQ_02955 PF07745 Glycosyl hydrolase family 53 XCQ_02960 PF00456 Transketolase, thiamine diphosphate binding domain XCQ_02960 PF17831 Pyruvate dehydrogenase E1 component middle domain XCQ_02965 PF00145 C-5 cytosine-specific DNA methylase XCQ_02975 PF00106 short chain dehydrogenase XCQ_02990 PF00106 short chain dehydrogenase XCQ_03000 PF13409 Glutathione S-transferase, N-terminal domain XCQ_03025 PF03176 MMPL family XCQ_03025 PF12823 Domain of unknown function (DUF3817) XCQ_03030 PF00326 Prolyl oligopeptidase family XCQ_03030 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XCQ_03035 PF07759 Protein of unknown function (DUF1615) XCQ_03040 PF00990 Diguanylate cyclase, GGDEF domain XCQ_03065 PF00892 EamA-like transporter family XCQ_03070 PF00497 Bacterial extracellular solute-binding proteins, family 3 XCQ_03080 PF00324 Amino acid permease XCQ_03090 PF01544 CorA-like Mg2+ transporter protein XCQ_03100 PF01204 Trehalase XCQ_03110 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XCQ_03110 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XCQ_03135 PF00990 Diguanylate cyclase, GGDEF domain XCQ_03135 PF00563 EAL domain XCQ_03135 PF08447 PAS fold XCQ_03135 PF08448 PAS fold XCQ_03140 PF02203 Tar ligand binding domain homologue XCQ_03140 PF00672 HAMP domain XCQ_03140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_03145 PF00150 Cellulase (glycosyl hydrolase family 5) XCQ_03145 PF00553 Cellulose binding domain XCQ_03150 PF01740 STAS domain XCQ_03150 PF00916 Sulfate permease family XCQ_03155 PF00990 Diguanylate cyclase, GGDEF domain XCQ_03165 PF13632 Glycosyl transferase family group 2 XCQ_03175 PF07694 5TMR of 5TMR-LYT XCQ_03175 PF06580 Histidine kinase XCQ_03180 PF00072 Response regulator receiver domain XCQ_03180 PF04397 LytTr DNA-binding domain XCQ_03185 PF03900 Porphobilinogen deaminase, C-terminal domain XCQ_03185 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain XCQ_03210 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XCQ_03210 PF00326 Prolyl oligopeptidase family XCQ_03220 PF00155 Aminotransferase class I and II XCQ_03225 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XCQ_03225 PF00326 Prolyl oligopeptidase family XCQ_03230 PF04304 Protein of unknown function (DUF454) XCQ_03240 PF01678 Diaminopimelate epimerase XCQ_03250 PF02899 Phage integrase, N-terminal SAM-like domain XCQ_03250 PF00589 Phage integrase family XCQ_03255 PF00227 Proteasome subunit XCQ_03260 PF07724 AAA domain (Cdc48 subfamily) XCQ_03260 PF10431 C-terminal, D2-small domain, of ClpB protein XCQ_03260 PF00004 ATPase family associated with various cellular activities (AAA) XCQ_03270 PF13673 Acetyltransferase (GNAT) domain XCQ_03275 PF13533 Biotin-lipoyl like XCQ_03285 PF01209 ubiE/COQ5 methyltransferase family XCQ_03290 PF00563 EAL domain XCQ_03290 PF00990 Diguanylate cyclase, GGDEF domain XCQ_03290 PF03707 Bacterial signalling protein N terminal repeat XCQ_03295 PF01433 Peptidase family M1 domain XCQ_03295 PF11838 ERAP1-like C-terminal domain XCQ_03310 PF13360 PQQ-like domain XCQ_03315 PF00497 Bacterial extracellular solute-binding proteins, family 3 XCQ_03330 PF08240 Alcohol dehydrogenase GroES-like domain XCQ_03330 PF00107 Zinc-binding dehydrogenase XCQ_03340 PF01590 GAF domain XCQ_03340 PF02954 Bacterial regulatory protein, Fis family XCQ_03340 PF00158 Sigma-54 interaction domain XCQ_03345 PF00294 pfkB family carbohydrate kinase XCQ_03355 PF04085 rod shape-determining protein MreC XCQ_03365 PF03717 Penicillin-binding Protein dimerisation domain XCQ_03365 PF00905 Penicillin binding protein transpeptidase domain XCQ_03370 PF01098 Cell cycle protein XCQ_03375 PF00295 Glycosyl hydrolases family 28 XCQ_03380 PF13406 Transglycosylase SLT domain XCQ_03385 PF03330 Lytic transglycolase XCQ_03385 PF05036 Sporulation related domain XCQ_03390 PF07943 Penicillin-binding protein 5, C-terminal domain XCQ_03390 PF00768 D-alanyl-D-alanine carboxypeptidase XCQ_03400 PF04359 Protein of unknown function (DUF493) XCQ_03405 PF03099 Biotin/lipoate A/B protein ligase family XCQ_03410 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family XCQ_03410 PF04055 Radical SAM superfamily XCQ_03415 PF03572 Peptidase family S41 XCQ_03415 PF00595 PDZ domain XCQ_03415 PF17804 Tail specific protease N-terminal domain XCQ_03415 PF11818 C-terminal domain of tail specific protease (DUF3340) XCQ_03425 PF03466 LysR substrate binding domain XCQ_03425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_03435 PF01467 Cytidylyltransferase-like XCQ_03435 PF00293 NUDIX domain XCQ_03470 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain XCQ_03470 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XCQ_03475 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XCQ_03475 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XCQ_03480 PF04972 BON domain XCQ_03485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_03485 PF00360 Phytochrome region XCQ_03485 PF08446 PAS fold XCQ_03485 PF01590 GAF domain XCQ_03485 PF00512 His Kinase A (phospho-acceptor) domain XCQ_03490 PF00072 Response regulator receiver domain XCQ_03495 PF00512 His Kinase A (phospho-acceptor) domain XCQ_03495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_03500 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XCQ_03505 PF00106 short chain dehydrogenase XCQ_03545 PF03958 Bacterial type II/III secretion system short domain XCQ_03545 PF00263 Bacterial type II and III secretion system protein XCQ_03550 PF00437 Type II/IV secretion system protein XCQ_03555 PF00482 Type II secretion system (T2SS), protein F XCQ_03560 PF08334 Type II secretion system (T2SS), protein G XCQ_03560 PF07963 Prokaryotic N-terminal methylation motif XCQ_03565 PF12019 Type II transport protein GspH XCQ_03565 PF07963 Prokaryotic N-terminal methylation motif XCQ_03570 PF07963 Prokaryotic N-terminal methylation motif XCQ_03570 PF02501 Type II secretion system (T2SS), protein I XCQ_03575 PF07963 Prokaryotic N-terminal methylation motif XCQ_03575 PF11612 Type II secretion system (T2SS), protein J XCQ_03580 PF03934 Type II secretion system (T2SS), protein K XCQ_03620 PF00392 Bacterial regulatory proteins, gntR family XCQ_03620 PF07702 UTRA domain XCQ_03625 PF07690 Major Facilitator Superfamily XCQ_03630 PF00356 Bacterial regulatory proteins, lacI family XCQ_03635 PF01380 SIS domain XCQ_03640 PF01979 Amidohydrolase family XCQ_03650 PF01966 HD domain XCQ_03650 PF01743 Poly A polymerase head domain XCQ_03650 PF12627 Probable RNA and SrmB- binding site of polymerase A XCQ_03655 PF00732 GMC oxidoreductase XCQ_03655 PF05199 GMC oxidoreductase XCQ_03660 PF00171 Aldehyde dehydrogenase family XCQ_03665 PF02028 BCCT, betaine/carnitine/choline family transporter XCQ_03680 PF01323 DSBA-like thioredoxin domain XCQ_03690 PF00034 Cytochrome c XCQ_03695 PF01926 50S ribosome-binding GTPase XCQ_03700 PF10996 Beta-Casp domain XCQ_03700 PF00753 Metallo-beta-lactamase superfamily XCQ_03700 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain XCQ_03710 PF04107 Glutamate-cysteine ligase family 2(GCS2) XCQ_03715 PF00672 HAMP domain XCQ_03715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_03715 PF00512 His Kinase A (phospho-acceptor) domain XCQ_03720 PF00072 Response regulator receiver domain XCQ_03720 PF00486 Transcriptional regulatory protein, C terminal XCQ_03735 PF02583 Metal-sensitive transcriptional repressor XCQ_03740 PF00107 Zinc-binding dehydrogenase XCQ_03740 PF08240 Alcohol dehydrogenase GroES-like domain XCQ_03745 PF04828 Glutathione-dependent formaldehyde-activating enzyme XCQ_03750 PF00756 Putative esterase XCQ_03755 PF00155 Aminotransferase class I and II XCQ_03755 PF00392 Bacterial regulatory proteins, gntR family XCQ_03760 PF02567 Phenazine biosynthesis-like protein XCQ_03765 PF00892 EamA-like transporter family XCQ_03775 PF00005 ABC transporter XCQ_03775 PF12848 ABC transporter XCQ_03785 PF00464 Serine hydroxymethyltransferase XCQ_03790 PF03477 ATP cone domain XCQ_03800 PF01872 RibD C-terminal domain XCQ_03800 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region XCQ_03810 PF00677 Lumazine binding domain XCQ_03815 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase XCQ_03815 PF00925 GTP cyclohydrolase II XCQ_03820 PF00885 6,7-dimethyl-8-ribityllumazine synthase XCQ_03825 PF01029 NusB family XCQ_03830 PF00586 AIR synthase related protein, N-terminal domain XCQ_03830 PF02769 AIR synthase related protein, C-terminal domain XCQ_03850 PF03814 Potassium-transporting ATPase A subunit XCQ_03860 PF02669 K+-transporting ATPase, c chain XCQ_03865 PF13492 GAF domain XCQ_03865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_03865 PF00512 His Kinase A (phospho-acceptor) domain XCQ_03865 PF02702 Osmosensitive K+ channel His kinase sensor domain XCQ_03865 PF13493 Domain of unknown function (DUF4118) XCQ_03870 PF00072 Response regulator receiver domain XCQ_03870 PF00486 Transcriptional regulatory protein, C terminal XCQ_03885 PF02913 FAD linked oxidases, C-terminal domain XCQ_03885 PF01565 FAD binding domain XCQ_03890 PF04307 LexA-binding, inner membrane-associated putative hydrolase XCQ_03895 PF02021 Uncharacterised protein family UPF0102 XCQ_03905 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XCQ_03930 PF02381 MraZ protein, putative antitoxin-like XCQ_03935 PF01795 MraW methylase family XCQ_03940 PF04999 Cell division protein FtsL XCQ_03945 PF00905 Penicillin binding protein transpeptidase domain XCQ_03945 PF03717 Penicillin-binding Protein dimerisation domain XCQ_03950 PF01225 Mur ligase family, catalytic domain XCQ_03950 PF02875 Mur ligase family, glutamate ligase domain XCQ_03950 PF08245 Mur ligase middle domain XCQ_03955 PF01225 Mur ligase family, catalytic domain XCQ_03955 PF02875 Mur ligase family, glutamate ligase domain XCQ_03955 PF08245 Mur ligase middle domain XCQ_03960 PF00953 Glycosyl transferase family 4 XCQ_03965 PF01098 Cell cycle protein XCQ_03970 PF04101 Glycosyltransferase family 28 C-terminal domain XCQ_03970 PF03033 Glycosyltransferase family 28 N-terminal domain XCQ_03975 PF02875 Mur ligase family, glutamate ligase domain XCQ_03975 PF01225 Mur ligase family, catalytic domain XCQ_03975 PF08245 Mur ligase middle domain XCQ_03980 PF07478 D-ala D-ala ligase C-terminus XCQ_03980 PF01820 D-ala D-ala ligase N-terminus XCQ_03985 PF03799 Cell division protein FtsQ XCQ_03985 PF08478 POTRA domain, FtsQ-type XCQ_03990 PF02491 SHS2 domain inserted in FTSA XCQ_03995 PF00091 Tubulin/FtsZ family, GTPase domain XCQ_03995 PF12327 FtsZ family, C-terminal domain XCQ_04000 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase XCQ_04010 PF08525 Opacity-associated protein A N-terminal motif XCQ_04010 PF01476 LysM domain XCQ_04010 PF01551 Peptidase family M23 XCQ_04015 PF07516 SecA Wing and Scaffold domain XCQ_04015 PF01043 SecA preprotein cross-linking domain XCQ_04015 PF07517 SecA DEAD-like domain XCQ_04015 PF02810 SEC-C motif XCQ_04020 PF00293 NUDIX domain XCQ_04030 PF02219 Methylenetetrahydrofolate reductase XCQ_04040 PF16197 Ketoacyl-synthetase C-terminal extension XCQ_04040 PF00109 Beta-ketoacyl synthase, N-terminal domain XCQ_04040 PF02801 Beta-ketoacyl synthase, C-terminal domain XCQ_04040 PF08240 Alcohol dehydrogenase GroES-like domain XCQ_04040 PF00698 Acyl transferase domain XCQ_04040 PF00107 Zinc-binding dehydrogenase XCQ_04040 PF08659 KR domain XCQ_04040 PF00550 Phosphopantetheine attachment site XCQ_04040 PF14765 Polyketide synthase dehydratase XCQ_04045 PF00082 Subtilase family XCQ_04045 PF09286 Pro-kumamolisin, activation domain XCQ_04060 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XCQ_04065 PF00128 Alpha amylase, catalytic domain XCQ_04090 PF13649 Methyltransferase domain XCQ_04095 PF05221 S-adenosyl-L-homocysteine hydrolase XCQ_04095 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XCQ_04105 PF00311 Phosphoenolpyruvate carboxylase XCQ_04140 PF00328 Histidine phosphatase superfamily (branch 2) XCQ_04145 PF02773 S-adenosylmethionine synthetase, C-terminal domain XCQ_04145 PF02772 S-adenosylmethionine synthetase, central domain XCQ_04145 PF00438 S-adenosylmethionine synthetase, N-terminal domain XCQ_04155 PF13649 Methyltransferase domain XCQ_04160 PF01207 Dihydrouridine synthase (Dus) XCQ_04170 PF00294 pfkB family carbohydrate kinase XCQ_04175 PF07670 Nucleoside recognition XCQ_04175 PF07662 Na+ dependent nucleoside transporter C-terminus XCQ_04175 PF01773 Na+ dependent nucleoside transporter N-terminus XCQ_04180 PF00248 Aldo/keto reductase family XCQ_04190 PF07715 TonB-dependent Receptor Plug Domain XCQ_04190 PF00593 TonB dependent receptor XCQ_04210 PF00528 Binding-protein-dependent transport system inner membrane component XCQ_04215 PF00005 ABC transporter XCQ_04225 PF02668 Taurine catabolism dioxygenase TauD, TfdA family XCQ_04235 PF00005 ABC transporter XCQ_04240 PF13472 GDSL-like Lipase/Acylhydrolase family XCQ_04245 PF00072 Response regulator receiver domain XCQ_04245 PF00486 Transcriptional regulatory protein, C terminal XCQ_04250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_04250 PF08521 Two-component sensor kinase N-terminal XCQ_04250 PF00512 His Kinase A (phospho-acceptor) domain XCQ_04260 PF01219 Prokaryotic diacylglycerol kinase XCQ_04280 PF01790 Prolipoprotein diacylglyceryl transferase XCQ_04285 PF00303 Thymidylate synthase XCQ_04295 PF00186 Dihydrofolate reductase XCQ_04300 PF00158 Sigma-54 interaction domain XCQ_04305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCQ_04305 PF08028 Acyl-CoA dehydrogenase, C-terminal domain XCQ_04310 PF00005 ABC transporter XCQ_04315 PF00528 Binding-protein-dependent transport system inner membrane component XCQ_04325 PF00296 Luciferase-like monooxygenase XCQ_04330 PF03358 NADPH-dependent FMN reductase XCQ_04350 PF00296 Luciferase-like monooxygenase XCQ_04355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XCQ_04360 PF00528 Binding-protein-dependent transport system inner membrane component XCQ_04365 PF00528 Binding-protein-dependent transport system inner membrane component XCQ_04365 PF12911 N-terminal TM domain of oligopeptide transport permease C XCQ_04370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region XCQ_04370 PF00005 ABC transporter XCQ_04375 PF00149 Calcineurin-like phosphoesterase XCQ_04380 PF04379 ApaG domain XCQ_04385 PF00398 Ribosomal RNA adenine dimethylase XCQ_04390 PF04166 Pyridoxal phosphate biosynthetic protein PdxA XCQ_04395 PF00639 PPIC-type PPIASE domain XCQ_04395 PF09312 SurA N-terminal domain XCQ_04400 PF03968 OstA-like protein XCQ_04400 PF04453 LPS transport system D XCQ_04415 PF00850 Histone deacetylase domain XCQ_04420 PF01923 Cobalamin adenosyltransferase XCQ_04435 PF01494 FAD binding domain XCQ_04440 PF01494 FAD binding domain XCQ_04460 PF00392 Bacterial regulatory proteins, gntR family XCQ_04460 PF07729 FCD domain XCQ_04465 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XCQ_04470 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XCQ_04470 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit XCQ_04475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_04475 PF03466 LysR substrate binding domain XCQ_04480 PF00501 AMP-binding enzyme XCQ_04480 PF13193 AMP-binding enzyme C-terminal domain XCQ_04485 PF00171 Aldehyde dehydrogenase family XCQ_04490 PF00378 Enoyl-CoA hydratase/isomerase XCQ_04510 PF08450 SMP-30/Gluconolactonase/LRE-like region XCQ_04515 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XCQ_04515 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XCQ_04525 PF18125 RlmM ferredoxin-like domain XCQ_04525 PF01728 FtsJ-like methyltransferase XCQ_04550 PF00892 EamA-like transporter family XCQ_04560 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain XCQ_04560 PF00749 tRNA synthetases class I (E and Q), catalytic domain XCQ_04575 PF00072 Response regulator receiver domain XCQ_04575 PF00990 Diguanylate cyclase, GGDEF domain XCQ_04580 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XCQ_04580 PF00672 HAMP domain XCQ_04580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_04580 PF00512 His Kinase A (phospho-acceptor) domain XCQ_04580 PF01627 Hpt domain XCQ_04580 PF00072 Response regulator receiver domain XCQ_04585 PF00072 Response regulator receiver domain XCQ_04585 PF00196 Bacterial regulatory proteins, luxR family XCQ_04595 PF01625 Peptide methionine sulfoxide reductase XCQ_04605 PF00923 Transaldolase/Fructose-6-phosphate aldolase XCQ_04610 PF14760 Rnk N-terminus XCQ_04610 PF01272 Transcription elongation factor, GreA/GreB, C-term XCQ_04615 PF03466 LysR substrate binding domain XCQ_04615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_04620 PF13192 Thioredoxin domain XCQ_04620 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCQ_04625 PF10417 C-terminal domain of 1-Cys peroxiredoxin XCQ_04625 PF00578 AhpC/TSA family XCQ_04630 PF05175 Methyltransferase small domain XCQ_04630 PF17827 PrmC N-terminal domain XCQ_04635 PF00561 alpha/beta hydrolase fold XCQ_04645 PF00293 NUDIX domain XCQ_04650 PF01367 5'-3' exonuclease, C-terminal SAM fold XCQ_04650 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XCQ_04650 PF00476 DNA polymerase family A XCQ_04650 PF01612 3'-5' exonuclease XCQ_04700 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch XCQ_04705 PF02233 NAD(P) transhydrogenase beta subunit XCQ_04720 PF01063 Amino-transferase class IV XCQ_04725 PF04151 Bacterial pre-peptidase C-terminal domain XCQ_04725 PF00082 Subtilase family XCQ_04730 PF04151 Bacterial pre-peptidase C-terminal domain XCQ_04730 PF00082 Subtilase family XCQ_04735 PF04151 Bacterial pre-peptidase C-terminal domain XCQ_04735 PF00082 Subtilase family XCQ_04740 PF04073 Aminoacyl-tRNA editing domain XCQ_04760 PF03358 NADPH-dependent FMN reductase XCQ_04765 PF03631 Virulence factor BrkB XCQ_04770 PF08534 Redoxin XCQ_04785 PF03976 Polyphosphate kinase 2 (PPK2) XCQ_04790 PF00994 Probable molybdopterin binding domain XCQ_04800 PF03462 PCRF domain XCQ_04800 PF00472 RF-1 domain XCQ_04815 PF03550 Outer membrane lipoprotein LolB XCQ_04820 PF08544 GHMP kinases C terminal XCQ_04820 PF00288 GHMP kinases N terminal domain XCQ_04830 PF14572 Phosphoribosyl synthetase-associated domain XCQ_04830 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase XCQ_04835 PF01386 Ribosomal L25p family XCQ_04835 PF14693 Ribosomal protein TL5, C-terminal domain XCQ_04840 PF01195 Peptidyl-tRNA hydrolase XCQ_04845 PF01926 50S ribosome-binding GTPase XCQ_04845 PF06071 Protein of unknown function (DUF933) XCQ_04865 PF03144 Elongation factor Tu domain 2 XCQ_04865 PF00009 Elongation factor Tu GTP binding domain XCQ_04865 PF03143 Elongation factor Tu C-terminal domain XCQ_04875 PF00584 SecE/Sec61-gamma subunits of protein translocation complex XCQ_04880 PF00467 KOW motif XCQ_04880 PF02357 Transcription termination factor nusG XCQ_04885 PF00298 Ribosomal protein L11, RNA binding domain XCQ_04885 PF03946 Ribosomal protein L11, N-terminal domain XCQ_04890 PF00687 Ribosomal protein L1p/L10e family XCQ_04895 PF00466 Ribosomal protein L10 XCQ_04900 PF00542 Ribosomal protein L7/L12 C-terminal domain XCQ_04900 PF16320 Ribosomal protein L7/L12 dimerisation domain XCQ_04905 PF04563 RNA polymerase beta subunit XCQ_04905 PF04561 RNA polymerase Rpb2, domain 2 XCQ_04905 PF04565 RNA polymerase Rpb2, domain 3 XCQ_04905 PF10385 RNA polymerase beta subunit external 1 domain XCQ_04905 PF00562 RNA polymerase Rpb2, domain 6 XCQ_04905 PF04560 RNA polymerase Rpb2, domain 7 XCQ_04910 PF04997 RNA polymerase Rpb1, domain 1 XCQ_04910 PF04983 RNA polymerase Rpb1, domain 3 XCQ_04910 PF00623 RNA polymerase Rpb1, domain 2 XCQ_04910 PF05000 RNA polymerase Rpb1, domain 4 XCQ_04910 PF04998 RNA polymerase Rpb1, domain 5 XCQ_04915 PF00164 Ribosomal protein S12/S23 XCQ_04920 PF00177 Ribosomal protein S7p/S5e XCQ_04925 PF00679 Elongation factor G C-terminus XCQ_04925 PF14492 Elongation Factor G, domain II XCQ_04925 PF03764 Elongation factor G, domain IV XCQ_04925 PF00009 Elongation factor Tu GTP binding domain XCQ_04925 PF03144 Elongation factor Tu domain 2 XCQ_04930 PF03144 Elongation factor Tu domain 2 XCQ_04930 PF03143 Elongation factor Tu C-terminal domain XCQ_04930 PF00009 Elongation factor Tu GTP binding domain XCQ_04935 PF00338 Ribosomal protein S10p/S20e XCQ_04940 PF00297 Ribosomal protein L3 XCQ_04945 PF00573 Ribosomal protein L4/L1 family XCQ_04950 PF00276 Ribosomal protein L23 XCQ_04955 PF00181 Ribosomal Proteins L2, RNA binding domain XCQ_04955 PF03947 Ribosomal Proteins L2, C-terminal domain XCQ_04960 PF00203 Ribosomal protein S19 XCQ_04965 PF00237 Ribosomal protein L22p/L17e XCQ_04970 PF00189 Ribosomal protein S3, C-terminal domain XCQ_04970 PF07650 KH domain XCQ_04975 PF00252 Ribosomal protein L16p/L10e XCQ_04980 PF00831 Ribosomal L29 protein XCQ_04985 PF00366 Ribosomal protein S17 XCQ_04990 PF00238 Ribosomal protein L14p/L23e XCQ_04995 PF00467 KOW motif XCQ_04995 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 XCQ_05000 PF00281 Ribosomal protein L5 XCQ_05000 PF00673 ribosomal L5P family C-terminus XCQ_05005 PF00253 Ribosomal protein S14p/S29e XCQ_05010 PF00410 Ribosomal protein S8 XCQ_05015 PF00347 Ribosomal protein L6 XCQ_05020 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast XCQ_05025 PF00333 Ribosomal protein S5, N-terminal domain XCQ_05025 PF03719 Ribosomal protein S5, C-terminal domain XCQ_05030 PF00327 Ribosomal protein L30p/L7e XCQ_05035 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A XCQ_05040 PF00344 SecY translocase XCQ_05045 PF00416 Ribosomal protein S13/S18 XCQ_05050 PF00411 Ribosomal protein S11 XCQ_05055 PF00163 Ribosomal protein S4/S9 N-terminal domain XCQ_05055 PF01479 S4 domain XCQ_05060 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain XCQ_05060 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain XCQ_05060 PF01000 RNA polymerase Rpb3/RpoA insert domain XCQ_05065 PF01196 Ribosomal protein L17 XCQ_05070 PF02600 Disulfide bond formation protein DsbB XCQ_05085 PF01474 Class-II DAHP synthetase family XCQ_05095 PF01425 Amidase XCQ_05105 PF00679 Elongation factor G C-terminus XCQ_05105 PF03144 Elongation factor Tu domain 2 XCQ_05105 PF00009 Elongation factor Tu GTP binding domain XCQ_05110 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XCQ_05115 PF00056 lactate/malate dehydrogenase, NAD binding domain XCQ_05115 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain XCQ_05120 PF00043 Glutathione S-transferase, C-terminal domain XCQ_05120 PF02798 Glutathione S-transferase, N-terminal domain XCQ_05130 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XCQ_05130 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCQ_05135 PF08240 Alcohol dehydrogenase GroES-like domain XCQ_05135 PF00107 Zinc-binding dehydrogenase XCQ_05140 PF05736 OprF membrane domain XCQ_05140 PF00691 OmpA family XCQ_05150 PF00849 RNA pseudouridylate synthase XCQ_05160 PF00155 Aminotransferase class I and II XCQ_05170 PF00528 Binding-protein-dependent transport system inner membrane component XCQ_05175 PF00528 Binding-protein-dependent transport system inner membrane component XCQ_05180 PF17850 CysA C-terminal regulatory domain XCQ_05180 PF12857 TOBE-like domain XCQ_05180 PF00005 ABC transporter XCQ_05190 PF08240 Alcohol dehydrogenase GroES-like domain XCQ_05190 PF00107 Zinc-binding dehydrogenase XCQ_05205 PF05506 Domain of unknown function (DUF756) XCQ_05205 PF04185 Phosphoesterase family XCQ_05215 PF10459 Peptidase S46 XCQ_05220 PF00300 Histidine phosphatase superfamily (branch 1) XCQ_05225 PF02875 Mur ligase family, glutamate ligase domain XCQ_05225 PF08245 Mur ligase middle domain XCQ_05240 PF00156 Phosphoribosyl transferase domain XCQ_05245 PF04305 Protein of unknown function (DUF455) XCQ_05265 PF00149 Calcineurin-like phosphoesterase XCQ_05270 PF01569 PAP2 superfamily XCQ_05275 PF13439 Glycosyltransferase Family 4 XCQ_05275 PF00534 Glycosyl transferases group 1 XCQ_05280 PF02541 Ppx/GppA phosphatase family XCQ_05285 PF13089 Polyphosphate kinase N-terminal domain XCQ_05285 PF17941 Polyphosphate kinase C-terminal domain 1 XCQ_05285 PF02503 Polyphosphate kinase middle domain XCQ_05285 PF13090 Polyphosphate kinase C-terminal domain 2 XCQ_05290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_05290 PF00512 His Kinase A (phospho-acceptor) domain XCQ_05290 PF11808 Phosphate regulon sensor protein PhoR XCQ_05290 PF00989 PAS fold XCQ_05295 PF00072 Response regulator receiver domain XCQ_05295 PF00486 Transcriptional regulatory protein, C terminal XCQ_05300 PF01435 Peptidase family M48 XCQ_05300 PF13181 Tetratricopeptide repeat XCQ_05305 PF00462 Glutaredoxin XCQ_05315 PF00180 Isocitrate/isopropylmalate dehydrogenase XCQ_05455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_05455 PF00989 PAS fold XCQ_05455 PF00512 His Kinase A (phospho-acceptor) domain XCQ_05470 PF05697 Bacterial trigger factor protein (TF) XCQ_05470 PF05698 Bacterial trigger factor protein (TF) C-terminus XCQ_05475 PF00574 Clp protease XCQ_05480 PF07724 AAA domain (Cdc48 subfamily) XCQ_05480 PF10431 C-terminal, D2-small domain, of ClpB protein XCQ_05480 PF06689 ClpX C4-type zinc finger XCQ_05485 PF00004 ATPase family associated with various cellular activities (AAA) XCQ_05485 PF05362 Lon protease (S16) C-terminal proteolytic domain XCQ_05485 PF02190 ATP-dependent protease La (LON) substrate-binding domain XCQ_05490 PF00216 Bacterial DNA-binding protein XCQ_05515 PF05257 CHAP domain XCQ_05515 PF01476 LysM domain XCQ_05520 PF00753 Metallo-beta-lactamase superfamily XCQ_05520 PF16123 Hydroxyacylglutathione hydrolase C-terminus XCQ_05530 PF00075 RNase H XCQ_05535 PF00929 Exonuclease XCQ_05555 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XCQ_05565 PF00753 Metallo-beta-lactamase superfamily XCQ_05565 PF12706 Beta-lactamase superfamily domain XCQ_05570 PF06463 Molybdenum Cofactor Synthesis C XCQ_05570 PF04055 Radical SAM superfamily XCQ_05580 PF01967 MoaC family XCQ_05585 PF02597 ThiS family XCQ_05590 PF02391 MoaE protein XCQ_05635 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding XCQ_05635 PF12169 DNA polymerase III subunits gamma and tau domain III XCQ_05635 PF12170 DNA polymerase III tau subunit V interacting with alpha XCQ_05640 PF02575 YbaB/EbfC DNA-binding family XCQ_05645 PF02132 RecR protein XCQ_05645 PF13662 Toprim domain XCQ_05650 PF01230 HIT domain XCQ_05660 PF13559 Domain of unknown function (DUF4129) XCQ_05660 PF01841 Transglutaminase-like superfamily XCQ_05660 PF11992 Domain of unknown function (DUF3488) XCQ_05670 PF07726 ATPase family associated with various cellular activities (AAA) XCQ_05670 PF17863 AAA lid domain XCQ_05690 PF02545 Maf-like protein XCQ_05700 PF01783 Ribosomal L32p protein family XCQ_05705 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XCQ_05705 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XCQ_05715 PF00698 Acyl transferase domain XCQ_05725 PF00550 Phosphopantetheine attachment site XCQ_05730 PF00109 Beta-ketoacyl synthase, N-terminal domain XCQ_05730 PF02801 Beta-ketoacyl synthase, C-terminal domain XCQ_05735 PF00425 chorismate binding enzyme XCQ_05735 PF04715 Anthranilate synthase component I, N terminal region XCQ_05740 PF02618 YceG-like family XCQ_05745 PF09115 DNA polymerase III, delta subunit, C terminal XCQ_05765 PF00158 Sigma-54 interaction domain XCQ_05765 PF02954 Bacterial regulatory protein, Fis family XCQ_05765 PF06506 Propionate catabolism activator XCQ_05775 PF00285 Citrate synthase, C-terminal domain XCQ_05780 PF00330 Aconitase family (aconitate hydratase) XCQ_05780 PF00694 Aconitase C-terminal domain XCQ_05785 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH XCQ_05795 PF04303 PrpF protein XCQ_05800 PF07715 TonB-dependent Receptor Plug Domain XCQ_05800 PF00593 TonB dependent receptor XCQ_05810 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain XCQ_05810 PF00207 Alpha-2-macroglobulin family XCQ_05810 PF07703 Alpha-2-macroglobulin bait region domain XCQ_05810 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain XCQ_05810 PF11974 Bacterial alpha-2-macroglobulin MG3 domain XCQ_05810 PF17962 Bacterial macroglobulin domain 6 XCQ_05810 PF01835 MG2 domain XCQ_05810 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain XCQ_05825 PF06832 Penicillin-Binding Protein C-terminus Family XCQ_05825 PF00912 Transglycosylase XCQ_05825 PF00905 Penicillin binding protein transpeptidase domain XCQ_05835 PF08534 Redoxin XCQ_05845 PF00226 DnaJ domain XCQ_05845 PF01556 DnaJ C terminal domain XCQ_05850 PF00072 Response regulator receiver domain XCQ_05855 PF12221 Bacterial membrane protein N terminal XCQ_05855 PF01145 SPFH domain / Band 7 family XCQ_05860 PF01145 SPFH domain / Band 7 family XCQ_05870 PF00709 Adenylosuccinate synthetase XCQ_05875 PF11838 ERAP1-like C-terminal domain XCQ_05875 PF01433 Peptidase family M1 domain XCQ_05885 PF00440 Bacterial regulatory proteins, tetR family XCQ_05925 PF18766 SWI2/SNF2 ATPase XCQ_05925 PF11867 Domain of unknown function (DUF3387) XCQ_05925 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) XCQ_05950 PF00300 Histidine phosphatase superfamily (branch 1) XCQ_05950 PF13456 Reverse transcriptase-like XCQ_05955 PF01256 Carbohydrate kinase XCQ_05965 PF00723 Glycosyl hydrolases family 15 XCQ_05975 PF07971 Glycosyl hydrolase family 92 XCQ_05975 PF17678 Glycosyl hydrolase family 92 N-terminal domain XCQ_05995 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCQ_06015 PF17755 UvrA DNA-binding domain XCQ_06020 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XCQ_06020 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XCQ_06025 PF00941 FAD binding domain in molybdopterin dehydrogenase XCQ_06025 PF03450 CO dehydrogenase flavoprotein C-terminal domain XCQ_06030 PF01799 [2Fe-2S] binding domain XCQ_06030 PF00111 2Fe-2S iron-sulfur cluster binding domain XCQ_06065 PF01726 LexA DNA binding domain XCQ_06065 PF00717 Peptidase S24-like XCQ_06080 PF02811 PHP domain XCQ_06080 PF07733 Bacterial DNA polymerase III alpha NTPase domain XCQ_06080 PF14579 Helix-hairpin-helix motif XCQ_06080 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XCQ_06085 PF00326 Prolyl oligopeptidase family XCQ_06095 PF03169 OPT oligopeptide transporter protein XCQ_06110 PF00326 Prolyl oligopeptidase family XCQ_06110 PF07676 WD40-like Beta Propeller Repeat XCQ_06110 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XCQ_06125 PF12833 Helix-turn-helix domain XCQ_06125 PF02311 AraC-like ligand binding domain XCQ_06140 PF06628 Catalase-related immune-responsive XCQ_06140 PF18011 C-terminal domain found in long catalases XCQ_06140 PF00199 Catalase XCQ_06145 PF00248 Aldo/keto reductase family XCQ_06150 PF00135 Carboxylesterase family XCQ_06155 PF02347 Glycine cleavage system P-protein XCQ_06160 PF07690 Major Facilitator Superfamily XCQ_06175 PF00884 Sulfatase XCQ_06175 PF08019 Phosphoethanolamine transferase EptA/EptB XCQ_06190 PF00072 Response regulator receiver domain XCQ_06190 PF00486 Transcriptional regulatory protein, C terminal XCQ_06195 PF08521 Two-component sensor kinase N-terminal XCQ_06195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_06195 PF00512 His Kinase A (phospho-acceptor) domain XCQ_06205 PF03776 Septum formation topological specificity factor MinE XCQ_06210 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XCQ_06215 PF03775 Septum formation inhibitor MinC, C-terminal domain XCQ_06215 PF05209 Septum formation inhibitor MinC, N-terminal domain XCQ_06225 PF07730 Histidine kinase XCQ_06230 PF00196 Bacterial regulatory proteins, luxR family XCQ_06230 PF00072 Response regulator receiver domain XCQ_06245 PF00730 HhH-GPD superfamily base excision DNA repair protein XCQ_06270 PF02222 ATP-grasp domain XCQ_06280 PF04376 Arginine-tRNA-protein transferase, N terminus XCQ_06280 PF04377 Arginine-tRNA-protein transferase, C terminus XCQ_06305 PF00378 Enoyl-CoA hydratase/isomerase XCQ_06320 PF00005 ABC transporter XCQ_06320 PF17755 UvrA DNA-binding domain XCQ_06320 PF17760 UvrA interaction domain XCQ_06325 PF00829 Ribosomal prokaryotic L21 protein XCQ_06330 PF01016 Ribosomal L27 protein XCQ_06335 PF01018 GTP1/OBG XCQ_06335 PF01926 50S ribosome-binding GTPase XCQ_06340 PF01649 Ribosomal protein S20 XCQ_06345 PF03023 Lipid II flippase MurJ XCQ_06350 PF06574 FAD synthetase XCQ_06350 PF01687 Riboflavin kinase XCQ_06355 PF00133 tRNA synthetases class I (I, L, M and V) XCQ_06355 PF08264 Anticodon-binding domain of tRNA XCQ_06355 PF06827 Zinc finger found in FPG and IleRS XCQ_06360 PF01252 Signal peptidase (SPase) II XCQ_06365 PF02401 LytB protein XCQ_06375 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XCQ_06375 PF06481 COX Aromatic Rich Motif XCQ_06380 PF00115 Cytochrome C and Quinol oxidase polypeptide I XCQ_06385 PF00510 Cytochrome c oxidase subunit III XCQ_06390 PF03626 Prokaryotic Cytochrome C oxidase subunit IV XCQ_06400 PF18073 Rubredoxin metal binding domain XCQ_06405 PF05656 Protein of unknown function (DUF805) XCQ_06415 PF12833 Helix-turn-helix domain XCQ_06420 PF00183 Hsp90 protein XCQ_06420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_06430 PF08678 Rsbr N terminal XCQ_06430 PF01740 STAS domain XCQ_06435 PF01740 STAS domain XCQ_06440 PF13581 Histidine kinase-like ATPase domain XCQ_06450 PF17149 Periplasmic sensor domain found in signal transduction proteins XCQ_06450 PF01627 Hpt domain XCQ_06450 PF00672 HAMP domain XCQ_06450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_06450 PF00512 His Kinase A (phospho-acceptor) domain XCQ_06450 PF00072 Response regulator receiver domain XCQ_06455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_06455 PF00512 His Kinase A (phospho-acceptor) domain XCQ_06455 PF08448 PAS fold XCQ_06455 PF13188 PAS domain XCQ_06455 PF00072 Response regulator receiver domain XCQ_06460 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XCQ_06460 PF04616 Glycosyl hydrolases family 43 XCQ_06465 PF07715 TonB-dependent Receptor Plug Domain XCQ_06465 PF00593 TonB dependent receptor XCQ_06470 PF00085 Thioredoxin XCQ_06475 PF07237 Protein of unknown function (DUF1428) XCQ_06480 PF02702 Osmosensitive K+ channel His kinase sensor domain XCQ_06480 PF00512 His Kinase A (phospho-acceptor) domain XCQ_06480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_06480 PF13492 GAF domain XCQ_06480 PF13493 Domain of unknown function (DUF4118) XCQ_06485 PF01339 CheB methylesterase XCQ_06490 PF03705 CheR methyltransferase, all-alpha domain XCQ_06490 PF01739 CheR methyltransferase, SAM binding domain XCQ_06495 PF00672 HAMP domain XCQ_06495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_06495 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XCQ_06495 PF00072 Response regulator receiver domain XCQ_06495 PF01627 Hpt domain XCQ_06495 PF00512 His Kinase A (phospho-acceptor) domain XCQ_06500 PF00072 Response regulator receiver domain XCQ_06500 PF13426 PAS domain XCQ_06500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_06505 PF00072 Response regulator receiver domain XCQ_06510 PF00722 Glycosyl hydrolases family 16 XCQ_06520 PF06964 Alpha-L-arabinofuranosidase C-terminal domain XCQ_06525 PF01263 Aldose 1-epimerase XCQ_06530 PF01578 Cytochrome C assembly protein XCQ_06535 PF02978 Signal peptide binding domain XCQ_06535 PF02881 SRP54-type protein, helical bundle domain XCQ_06535 PF00448 SRP54-type protein, GTPase domain XCQ_06540 PF03060 Nitronate monooxygenase XCQ_06545 PF01063 Amino-transferase class IV XCQ_06550 PF00886 Ribosomal protein S16 XCQ_06555 PF05239 PRC-barrel domain XCQ_06555 PF01782 RimM N-terminal domain XCQ_06560 PF01746 tRNA (Guanine-1)-methyltransferase XCQ_06565 PF01245 Ribosomal protein L19 XCQ_06585 PF01479 S4 domain XCQ_06590 PF00141 Peroxidase XCQ_06600 PF01624 MutS domain I XCQ_06600 PF05188 MutS domain II XCQ_06600 PF05192 MutS domain III XCQ_06600 PF05190 MutS family domain IV XCQ_06600 PF00488 MutS domain V XCQ_06610 PF05593 RHS Repeat XCQ_06610 PF03527 RHS protein XCQ_06630 PF16355 Domain of unknown function (DUF4982) XCQ_06630 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XCQ_06630 PF00703 Glycosyl hydrolases family 2 XCQ_06630 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XCQ_06630 PF02837 Glycosyl hydrolases family 2, sugar binding domain XCQ_06635 PF07745 Glycosyl hydrolase family 53 XCQ_06645 PF09856 Predicted transcriptional regulator (DUF2083) XCQ_06645 PF01381 Helix-turn-helix XCQ_06645 PF06114 IrrE N-terminal-like domain XCQ_06650 PF00171 Aldehyde dehydrogenase family XCQ_06655 PF02770 Acyl-CoA dehydrogenase, middle domain XCQ_06655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCQ_06655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCQ_06660 PF00378 Enoyl-CoA hydratase/isomerase XCQ_06665 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XCQ_06665 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XCQ_06665 PF00378 Enoyl-CoA hydratase/isomerase XCQ_06670 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XCQ_06670 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XCQ_06675 PF01545 Cation efflux family XCQ_06680 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XCQ_06680 PF00378 Enoyl-CoA hydratase/isomerase XCQ_06680 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XCQ_06685 PF04542 Sigma-70 region 2 XCQ_06685 PF08281 Sigma-70, region 4 XCQ_06695 PF13180 PDZ domain XCQ_06700 PF06421 GTP-binding protein LepA C-terminus XCQ_06700 PF00679 Elongation factor G C-terminus XCQ_06700 PF00009 Elongation factor Tu GTP binding domain XCQ_06700 PF03144 Elongation factor Tu domain 2 XCQ_06705 PF10502 Signal peptidase, peptidase S26 XCQ_06715 PF00035 Double-stranded RNA binding motif XCQ_06715 PF14622 Ribonuclease-III-like XCQ_06720 PF01926 50S ribosome-binding GTPase XCQ_06720 PF07650 KH domain XCQ_06725 PF02565 Recombination protein O C terminal XCQ_06725 PF11967 Recombination protein O N terminal XCQ_06735 PF05958 tRNA (Uracil-5-)-methyltransferase XCQ_06740 PF01928 CYTH domain XCQ_06745 PF01323 DSBA-like thioredoxin domain XCQ_06750 PF01593 Flavin containing amine oxidoreductase XCQ_06755 PF04244 Deoxyribodipyrimidine photo-lyase-related protein XCQ_06760 PF00933 Glycosyl hydrolase family 3 N terminal domain XCQ_06765 PF00156 Phosphoribosyl transferase domain XCQ_06770 PF01048 Phosphorylase superfamily XCQ_06775 PF00313 'Cold-shock' DNA-binding domain XCQ_06780 PF01494 FAD binding domain XCQ_06790 PF00270 DEAD/DEAH box helicase XCQ_06790 PF08494 DEAD/H associated XCQ_06790 PF00271 Helicase conserved C-terminal domain XCQ_06795 PF04679 ATP dependent DNA ligase C terminal region XCQ_06795 PF01068 ATP dependent DNA ligase domain XCQ_06795 PF04675 DNA ligase N terminus XCQ_06805 PF04679 ATP dependent DNA ligase C terminal region XCQ_06805 PF04675 DNA ligase N terminus XCQ_06805 PF01068 ATP dependent DNA ligase domain XCQ_06820 PF00072 Response regulator receiver domain XCQ_06820 PF00990 Diguanylate cyclase, GGDEF domain XCQ_06835 PF00108 Thiolase, N-terminal domain XCQ_06835 PF02803 Thiolase, C-terminal domain XCQ_06840 PF03797 Autotransporter beta-domain XCQ_06840 PF12951 Passenger-associated-transport-repeat XCQ_06840 PF00082 Subtilase family XCQ_06845 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain XCQ_06845 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XCQ_06860 PF01863 Protein of unknown function DUF45 XCQ_06865 PF07043 Protein of unknown function (DUF1328) XCQ_06875 PF01258 Prokaryotic dksA/traR C4-type zinc finger XCQ_06895 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCQ_06905 PF03831 PhnA domain XCQ_06905 PF08274 PhnA Zinc-Ribbon XCQ_06910 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XCQ_06915 PF07690 Major Facilitator Superfamily XCQ_06950 PF03706 Lysylphosphatidylglycerol synthase TM region XCQ_06950 PF09924 Uncharacterised conserved protein (DUF2156) XCQ_06960 PF01042 Endoribonuclease L-PSP XCQ_07005 PF04542 Sigma-70 region 2 XCQ_07005 PF04545 Sigma-70, region 4 XCQ_07020 PF04060 Putative Fe-S cluster XCQ_07030 PF09334 tRNA synthetases class I (M) XCQ_07030 PF01588 Putative tRNA binding domain XCQ_07045 PF13732 Domain of unknown function (DUF4162) XCQ_07045 PF00005 ABC transporter XCQ_07050 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XCQ_07055 PF00324 Amino acid permease XCQ_07060 PF02574 Homocysteine S-methyltransferase XCQ_07070 PF02592 Putative vitamin uptake transporter XCQ_07090 PF03551 Transcriptional regulator PadR-like family XCQ_07110 PF03653 Uncharacterised protein family (UPF0093) XCQ_07125 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit XCQ_07130 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XCQ_07130 PF14579 Helix-hairpin-helix motif XCQ_07130 PF02811 PHP domain XCQ_07130 PF01336 OB-fold nucleic acid binding domain XCQ_07130 PF07733 Bacterial DNA polymerase III alpha NTPase domain XCQ_07135 PF01351 Ribonuclease HII XCQ_07140 PF02684 Lipid-A-disaccharide synthetase XCQ_07145 PF00132 Bacterial transferase hexapeptide (six repeats) XCQ_07145 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 XCQ_07150 PF07977 FabA-like domain XCQ_07155 PF00132 Bacterial transferase hexapeptide (six repeats) XCQ_07155 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD XCQ_07165 PF01103 Surface antigen XCQ_07165 PF07244 Surface antigen variable number repeat XCQ_07170 PF17820 PDZ domain XCQ_07170 PF02163 Peptidase family M50 XCQ_07175 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain XCQ_07175 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase XCQ_07175 PF13288 DXP reductoisomerase C-terminal domain XCQ_07185 PF01255 Putative undecaprenyl diphosphate synthase XCQ_07190 PF01765 Ribosome recycling factor XCQ_07195 PF00696 Amino acid kinase family XCQ_07200 PF00990 Diguanylate cyclase, GGDEF domain XCQ_07200 PF00072 Response regulator receiver domain XCQ_07205 PF00889 Elongation factor TS XCQ_07210 PF00318 Ribosomal protein S2 XCQ_07245 PF00557 Metallopeptidase family M24 XCQ_07255 PF00132 Bacterial transferase hexapeptide (six repeats) XCQ_07255 PF14602 Hexapeptide repeat of succinyl-transferase XCQ_07255 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal XCQ_07260 PF03960 ArsC family XCQ_07265 PF07687 Peptidase dimerisation domain XCQ_07265 PF01546 Peptidase family M20/M25/M40 XCQ_07270 PF00733 Asparagine synthase XCQ_07270 PF13537 Glutamine amidotransferase domain XCQ_07280 PF07715 TonB-dependent Receptor Plug Domain XCQ_07280 PF00593 TonB dependent receptor XCQ_07290 PF00210 Ferritin-like domain XCQ_07295 PF05724 Thiopurine S-methyltransferase (TPMT) XCQ_07305 PF00521 DNA gyrase/topoisomerase IV, subunit A XCQ_07305 PF03989 DNA gyrase C-terminal domain, beta-propeller XCQ_07320 PF02321 Outer membrane efflux protein XCQ_07325 PF00529 HlyD membrane-fusion protein of T1SS XCQ_07325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCQ_07330 PF07690 Major Facilitator Superfamily XCQ_07340 PF14310 Fibronectin type III-like domain XCQ_07340 PF00933 Glycosyl hydrolase family 3 N terminal domain XCQ_07340 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCQ_07350 PF00854 POT family XCQ_07375 PF12802 MarR family XCQ_07380 PF01432 Peptidase family M3 XCQ_07385 PF00255 Glutathione peroxidase XCQ_07390 PF00970 Oxidoreductase FAD-binding domain XCQ_07390 PF00175 Oxidoreductase NAD-binding domain XCQ_07395 PF00005 ABC transporter XCQ_07400 PF05681 Fumarate hydratase (Fumerase) XCQ_07400 PF05683 Fumarase C-terminus XCQ_07410 PF00484 Carbonic anhydrase XCQ_07415 PF02253 Phospholipase A1 XCQ_07425 PF00313 'Cold-shock' DNA-binding domain XCQ_07440 PF00899 ThiF family XCQ_07460 PF02770 Acyl-CoA dehydrogenase, middle domain XCQ_07460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCQ_07460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCQ_07470 PF00043 Glutathione S-transferase, C-terminal domain XCQ_07470 PF02798 Glutathione S-transferase, N-terminal domain XCQ_07475 PF00733 Asparagine synthase XCQ_07475 PF13537 Glutamine amidotransferase domain XCQ_07480 PF03358 NADPH-dependent FMN reductase XCQ_07485 PF03796 DnaB-like helicase C terminal domain XCQ_07485 PF00772 DnaB-like helicase N terminal domain XCQ_07490 PF03441 FAD binding domain of DNA photolyase XCQ_07490 PF00875 DNA photolyase XCQ_07495 PF05736 OprF membrane domain XCQ_07495 PF00691 OmpA family XCQ_07500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_07500 PF03466 LysR substrate binding domain XCQ_07515 PF00529 HlyD membrane-fusion protein of T1SS XCQ_07515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCQ_07520 PF00873 AcrB/AcrD/AcrF family XCQ_07525 PF00106 short chain dehydrogenase XCQ_07530 PF02321 Outer membrane efflux protein XCQ_07535 PF00990 Diguanylate cyclase, GGDEF domain XCQ_07545 PF00990 Diguanylate cyclase, GGDEF domain XCQ_07690 PF00082 Subtilase family XCQ_07695 PF01668 SmpB protein XCQ_07700 PF03364 Polyketide cyclase / dehydrase and lipid transport XCQ_07705 PF03658 RnfH family Ubiquitin XCQ_07710 PF04355 SmpA / OmlA family XCQ_07715 PF01475 Ferric uptake regulator family XCQ_07720 PF02463 RecF/RecN/SMC N terminal domain XCQ_07725 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding XCQ_07725 PF01628 HrcA protein C terminal domain XCQ_07730 PF01025 GrpE XCQ_07735 PF00012 Hsp70 protein XCQ_07740 PF00684 DnaJ central domain XCQ_07740 PF01556 DnaJ C terminal domain XCQ_07740 PF00226 DnaJ domain XCQ_07750 PF08543 Phosphomethylpyrimidine kinase XCQ_07775 PF03412 Peptidase C39 family XCQ_07775 PF00005 ABC transporter XCQ_07775 PF00664 ABC transporter transmembrane region XCQ_07780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_07780 PF03466 LysR substrate binding domain XCQ_07785 PF00664 ABC transporter transmembrane region XCQ_07785 PF00005 ABC transporter XCQ_07790 PF01205 Uncharacterized protein family UPF0029 XCQ_07795 PF03641 Possible lysine decarboxylase XCQ_07800 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCQ_07800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XCQ_07805 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XCQ_07805 PF00364 Biotin-requiring enzyme XCQ_07805 PF02817 e3 binding domain XCQ_07810 PF16870 2-oxoglutarate dehydrogenase C-terminal XCQ_07810 PF00676 Dehydrogenase E1 component XCQ_07810 PF16078 2-oxoglutarate dehydrogenase N-terminus XCQ_07810 PF02779 Transketolase, pyrimidine binding domain XCQ_07820 PF08007 Cupin superfamily protein XCQ_07830 PF00206 Lyase XCQ_07830 PF08328 Adenylosuccinate lyase C-terminal XCQ_07840 PF00571 CBS domain XCQ_07840 PF03471 Transporter associated domain XCQ_07840 PF01595 Cyclin M transmembrane N-terminal domain XCQ_07845 PF10415 Fumarase C C-terminus XCQ_07845 PF00206 Lyase XCQ_07870 PF00005 ABC transporter XCQ_07875 PF00392 Bacterial regulatory proteins, gntR family XCQ_07885 PF00255 Glutathione peroxidase XCQ_07890 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XCQ_07890 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCQ_07895 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XCQ_07895 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XCQ_07895 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XCQ_07900 PF04102 SlyX XCQ_07915 PF00356 Bacterial regulatory proteins, lacI family XCQ_07920 PF07690 Major Facilitator Superfamily XCQ_07925 PF00294 pfkB family carbohydrate kinase XCQ_07935 PF02310 B12 binding domain XCQ_07935 PF02607 B12 binding domain XCQ_07935 PF02965 Vitamin B12 dependent methionine synthase, activation domain XCQ_07935 PF00809 Pterin binding enzyme XCQ_07935 PF02574 Homocysteine S-methyltransferase XCQ_07940 PF00809 Pterin binding enzyme XCQ_07940 PF02574 Homocysteine S-methyltransferase XCQ_07945 PF01209 ubiE/COQ5 methyltransferase family XCQ_07975 PF17876 Cold shock domain XCQ_07975 PF08461 Ribonuclease R winged-helix domain XCQ_07975 PF08206 Ribonuclease B OB domain XCQ_07975 PF00773 RNB domain XCQ_07975 PF00575 S1 RNA binding domain XCQ_07985 PF00588 SpoU rRNA Methylase family XCQ_07985 PF08032 RNA 2'-O ribose methyltransferase substrate binding XCQ_07990 PF00990 Diguanylate cyclase, GGDEF domain XCQ_07995 PF00929 Exonuclease XCQ_08005 PF01895 PhoU domain XCQ_08010 PF00005 ABC transporter XCQ_08015 PF00528 Binding-protein-dependent transport system inner membrane component XCQ_08020 PF00528 Binding-protein-dependent transport system inner membrane component XCQ_08025 PF12849 PBP superfamily domain XCQ_08030 PF12849 PBP superfamily domain XCQ_08045 PF00484 Carbonic anhydrase XCQ_08050 PF00916 Sulfate permease family XCQ_08050 PF01740 STAS domain XCQ_08055 PF10576 Iron-sulfur binding domain of endonuclease III XCQ_08055 PF00633 Helix-hairpin-helix motif XCQ_08055 PF00730 HhH-GPD superfamily base excision DNA repair protein XCQ_08065 PF00378 Enoyl-CoA hydratase/isomerase XCQ_08070 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCQ_08070 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XCQ_08075 PF00293 NUDIX domain XCQ_08080 PF00581 Rhodanese-like domain XCQ_08110 PF00005 ABC transporter XCQ_08110 PF12848 ABC transporter XCQ_08110 PF16326 ABC transporter C-terminal domain XCQ_08120 PF10672 S-adenosylmethionine-dependent methyltransferase XCQ_08120 PF02926 THUMP domain XCQ_08120 PF01170 Putative RNA methylase family UPF0020 XCQ_08125 PF01513 ATP-NAD kinase XCQ_08150 PF08411 Exonuclease C-terminal XCQ_08150 PF00929 Exonuclease XCQ_08160 PF01494 FAD binding domain XCQ_08165 PF00266 Aminotransferase class-V XCQ_08175 PF06052 3-hydroxyanthranilic acid dioxygenase XCQ_08180 PF00484 Carbonic anhydrase XCQ_08225 PF00072 Response regulator receiver domain XCQ_08225 PF00196 Bacterial regulatory proteins, luxR family XCQ_08245 PF04299 Putative FMN-binding domain XCQ_08265 PF00152 tRNA synthetases class II (D, K and N) XCQ_08265 PF01336 OB-fold nucleic acid binding domain XCQ_08270 PF01521 Iron-sulphur cluster biosynthesis XCQ_08275 PF01250 Ribosomal protein S6 XCQ_08280 PF01084 Ribosomal protein S18 XCQ_08285 PF01281 Ribosomal protein L9, N-terminal domain XCQ_08285 PF03948 Ribosomal protein L9, C-terminal domain XCQ_08290 PF02463 RecF/RecN/SMC N terminal domain XCQ_08295 PF04354 ZipA, C-terminal FtsZ-binding domain XCQ_08305 PF00155 Aminotransferase class I and II XCQ_08310 PF03119 NAD-dependent DNA ligase C4 zinc finger domain XCQ_08310 PF00533 BRCA1 C Terminus (BRCT) domain XCQ_08310 PF01653 NAD-dependent DNA ligase adenylation domain XCQ_08310 PF03120 NAD-dependent DNA ligase OB-fold domain XCQ_08310 PF12826 Helix-hairpin-helix motif XCQ_08315 PF00152 tRNA synthetases class II (D, K and N) XCQ_08330 PF01008 Initiation factor 2 subunit family XCQ_08335 PF03989 DNA gyrase C-terminal domain, beta-propeller XCQ_08335 PF00521 DNA gyrase/topoisomerase IV, subunit A XCQ_08340 PF13360 PQQ-like domain XCQ_08350 PF01175 Urocanase Rossmann-like domain XCQ_08350 PF17391 Urocanase N-terminal domain XCQ_08350 PF17392 Urocanase C-terminal domain XCQ_08360 PF00221 Aromatic amino acid lyase XCQ_08365 PF07969 Amidohydrolase family XCQ_08380 PF00392 Bacterial regulatory proteins, gntR family XCQ_08380 PF07702 UTRA domain XCQ_08410 PF01794 Ferric reductase like transmembrane component XCQ_08415 PF00174 Oxidoreductase molybdopterin binding domain XCQ_08420 PF00266 Aminotransferase class-V XCQ_08425 PF01842 ACT domain XCQ_08425 PF01817 Chorismate mutase type II XCQ_08425 PF00800 Prephenate dehydratase XCQ_08430 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XCQ_08440 PF03544 Gram-negative bacterial TonB protein C-terminal XCQ_08445 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XCQ_08445 PF02403 Seryl-tRNA synthetase N-terminal domain XCQ_08450 PF02525 Flavodoxin-like fold XCQ_08455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_08455 PF03466 LysR substrate binding domain XCQ_08470 PF02203 Tar ligand binding domain homologue XCQ_08470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_08470 PF00672 HAMP domain XCQ_08475 PF01494 FAD binding domain XCQ_08485 PF08448 PAS fold XCQ_08485 PF13188 PAS domain XCQ_08485 PF00072 Response regulator receiver domain XCQ_08485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_08485 PF00512 His Kinase A (phospho-acceptor) domain XCQ_08490 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XCQ_08490 PF01627 Hpt domain XCQ_08490 PF00512 His Kinase A (phospho-acceptor) domain XCQ_08490 PF00672 HAMP domain XCQ_08490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_08490 PF00072 Response regulator receiver domain XCQ_08495 PF06745 KaiC XCQ_08500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_08500 PF00072 Response regulator receiver domain XCQ_08500 PF13426 PAS domain XCQ_08510 PF03918 Cytochrome C biogenesis protein XCQ_08515 PF08534 Redoxin XCQ_08520 PF01578 Cytochrome C assembly protein XCQ_08520 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XCQ_08525 PF03100 CcmE XCQ_08535 PF01578 Cytochrome C assembly protein XCQ_08540 PF00082 Subtilase family XCQ_08550 PF08281 Sigma-70, region 4 XCQ_08550 PF04542 Sigma-70 region 2 XCQ_08560 PF00034 Cytochrome c XCQ_08575 PF05523 WxcM-like, C-terminal XCQ_08595 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XCQ_08600 PF01943 Polysaccharide biosynthesis protein XCQ_08605 PF00535 Glycosyl transferase family 2 XCQ_08620 PF08241 Methyltransferase domain XCQ_08640 PF13579 Glycosyl transferase 4-like domain XCQ_08640 PF00534 Glycosyl transferases group 1 XCQ_08655 PF00005 ABC transporter XCQ_08660 PF00664 ABC transporter transmembrane region XCQ_08660 PF00005 ABC transporter XCQ_08665 PF07690 Major Facilitator Superfamily XCQ_08670 PF00296 Luciferase-like monooxygenase XCQ_08685 PF01595 Cyclin M transmembrane N-terminal domain XCQ_08685 PF03471 Transporter associated domain XCQ_08685 PF00571 CBS domain XCQ_08695 PF01384 Phosphate transporter family XCQ_08710 PF00986 DNA gyrase B subunit, carboxyl terminus XCQ_08710 PF00204 DNA gyrase B XCQ_08710 PF01751 Toprim domain XCQ_08710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_08720 PF00117 Glutamine amidotransferase class-I XCQ_08720 PF06418 CTP synthase N-terminus XCQ_08725 PF00793 DAHP synthetase I family XCQ_08735 PF00113 Enolase, C-terminal TIM barrel domain XCQ_08735 PF03952 Enolase, N-terminal domain XCQ_08740 PF04977 Septum formation initiator XCQ_08745 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase XCQ_08750 PF02542 YgbB family XCQ_08755 PF01142 tRNA pseudouridine synthase D (TruD) XCQ_08760 PF01713 Smr domain XCQ_08765 PF01975 Survival protein SurE XCQ_08775 PF09335 SNARE associated Golgi protein XCQ_08780 PF01551 Peptidase family M23 XCQ_08780 PF01476 LysM domain XCQ_08785 PF04430 Protein of unknown function (DUF498/DUF598) XCQ_08790 PF01985 CRS1 / YhbY (CRM) domain XCQ_08795 PF01728 FtsJ-like methyltransferase XCQ_08800 PF06480 FtsH Extracellular XCQ_08800 PF17862 AAA+ lid domain XCQ_08800 PF00004 ATPase family associated with various cellular activities (AAA) XCQ_08800 PF01434 Peptidase family M41 XCQ_08805 PF00809 Pterin binding enzyme XCQ_08815 PF17209 Hfq protein XCQ_08820 PF16360 GTP-binding GTPase Middle Region XCQ_08820 PF01926 50S ribosome-binding GTPase XCQ_08820 PF13167 GTP-binding GTPase N-terminal XCQ_08825 PF02464 Competence-damaged protein XCQ_08830 PF03109 ABC1 family XCQ_08835 PF00717 Peptidase S24-like XCQ_08835 PF01726 LexA DNA binding domain XCQ_08840 PF00154 recA bacterial DNA recombination protein XCQ_08845 PF02631 RecX family XCQ_08850 PF02272 DHHA1 domain XCQ_08850 PF01411 tRNA synthetases class II (A) XCQ_08850 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XCQ_08855 PF02599 Global regulator protein family XCQ_08865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_08865 PF08447 PAS fold XCQ_08865 PF13426 PAS domain XCQ_08870 PF02678 Pirin XCQ_08870 PF17954 Quercetinase C-terminal cupin domain XCQ_08875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_08875 PF03466 LysR substrate binding domain XCQ_08900 PF02581 Thiamine monophosphate synthase XCQ_08900 PF08543 Phosphomethylpyrimidine kinase XCQ_08915 PF02562 PhoH-like protein XCQ_08915 PF13638 PIN domain XCQ_08920 PF00578 AhpC/TSA family XCQ_08935 PF00701 Dihydrodipicolinate synthetase family XCQ_08945 PF11953 Domain of unknown function (DUF3470) XCQ_08945 PF00037 4Fe-4S binding domain XCQ_08950 PF05035 2-keto-3-deoxy-galactonokinase XCQ_08955 PF08450 SMP-30/Gluconolactonase/LRE-like region XCQ_08960 PF13378 Enolase C-terminal domain-like XCQ_08960 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XCQ_08965 PF01081 KDPG and KHG aldolase XCQ_08970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_08970 PF03466 LysR substrate binding domain XCQ_08985 PF03442 Carbohydrate binding domain X2 XCQ_08985 PF00942 Cellulose binding domain XCQ_09000 PF01055 Glycosyl hydrolases family 31 XCQ_09000 PF17137 Domain of unknown function (DUF5110) XCQ_09000 PF16338 Domain of unknown function (DUF4968) XCQ_09010 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XCQ_09010 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XCQ_09020 PF00083 Sugar (and other) transporter XCQ_09040 PF01520 N-acetylmuramoyl-L-alanine amidase XCQ_09045 PF02649 Type I GTP cyclohydrolase folE2 XCQ_09055 PF12627 Probable RNA and SrmB- binding site of polymerase A XCQ_09055 PF01743 Poly A polymerase head domain XCQ_09055 PF12626 Polymerase A arginine-rich C-terminus XCQ_09060 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XCQ_09065 PF02548 Ketopantoate hydroxymethyltransferase XCQ_09070 PF02569 Pantoate-beta-alanine ligase XCQ_09075 PF02261 Aspartate decarboxylase XCQ_09080 PF00342 Phosphoglucose isomerase XCQ_09100 PF14310 Fibronectin type III-like domain XCQ_09100 PF00933 Glycosyl hydrolase family 3 N terminal domain XCQ_09100 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCQ_09105 PF00474 Sodium:solute symporter family XCQ_09110 PF00563 EAL domain XCQ_09110 PF01590 GAF domain XCQ_09110 PF00360 Phytochrome region XCQ_09110 PF00990 Diguanylate cyclase, GGDEF domain XCQ_09120 PF00150 Cellulase (glycosyl hydrolase family 5) XCQ_09120 PF02013 Cellulose or protein binding domain XCQ_09125 PF00072 Response regulator receiver domain XCQ_09135 PF04551 GcpE protein XCQ_09140 PF01569 PAP2 superfamily XCQ_09150 PF07690 Major Facilitator Superfamily XCQ_09155 PF01177 Asp/Glu/Hydantoin racemase XCQ_09160 PF00892 EamA-like transporter family XCQ_09165 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain XCQ_09165 PF01565 FAD binding domain XCQ_09170 PF01180 Dihydroorotate dehydrogenase XCQ_09185 PF00171 Aldehyde dehydrogenase family XCQ_09200 PF00535 Glycosyl transferase family 2 XCQ_09205 PF14883 Hypothetical glycosyl hydrolase family 13 XCQ_09205 PF01522 Polysaccharide deacetylase XCQ_09215 PF08479 POTRA domain, ShlB-type XCQ_09215 PF17287 POTRA domain XCQ_09215 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB XCQ_09220 PF05594 Haemagluttinin repeat XCQ_09220 PF13332 Hemagglutinin repeat XCQ_09220 PF04829 Pre-toxin domain with VENN motif XCQ_09245 PF05594 Haemagluttinin repeat XCQ_09245 PF13332 Hemagglutinin repeat XCQ_09245 PF05860 haemagglutination activity domain XCQ_09245 PF13018 Extended Signal Peptide of Type V secretion system XCQ_09245 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain XCQ_09255 PF00742 Homoserine dehydrogenase XCQ_09255 PF01842 ACT domain XCQ_09255 PF00696 Amino acid kinase family XCQ_09255 PF13840 ACT domain XCQ_09255 PF03447 Homoserine dehydrogenase, NAD binding domain XCQ_09260 PF08544 GHMP kinases C terminal XCQ_09260 PF00288 GHMP kinases N terminal domain XCQ_09270 PF00291 Pyridoxal-phosphate dependent enzyme XCQ_09270 PF14821 Threonine synthase N terminus XCQ_09280 PF00027 Cyclic nucleotide-binding domain XCQ_09280 PF13545 Crp-like helix-turn-helix domain XCQ_09285 PF03129 Anticodon binding domain XCQ_09285 PF13393 Histidyl-tRNA synthetase XCQ_09295 PF01634 ATP phosphoribosyltransferase XCQ_09295 PF08029 HisG, C-terminal domain XCQ_09300 PF00815 Histidinol dehydrogenase XCQ_09305 PF00155 Aminotransferase class I and II XCQ_09310 PF00475 Imidazoleglycerol-phosphate dehydratase XCQ_09315 PF00117 Glutamine amidotransferase class-I XCQ_09320 PF00977 Histidine biosynthesis protein XCQ_09325 PF00977 Histidine biosynthesis protein XCQ_09330 PF01502 Phosphoribosyl-AMP cyclohydrolase XCQ_09330 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase XCQ_09350 PF03079 ARD/ARD' family XCQ_09355 PF00596 Class II Aldolase and Adducin N-terminal domain XCQ_09360 PF13520 Amino acid permease XCQ_09365 PF13520 Amino acid permease XCQ_09375 PF01842 ACT domain XCQ_09375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XCQ_09375 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XCQ_09380 PF02913 FAD linked oxidases, C-terminal domain XCQ_09380 PF01565 FAD binding domain XCQ_09400 PF09285 Elongation factor P, C-terminal XCQ_09400 PF01132 Elongation factor P (EF-P) OB domain XCQ_09400 PF08207 Elongation factor P (EF-P) KOW-like domain XCQ_09405 PF00106 short chain dehydrogenase XCQ_09410 PF00682 HMGL-like XCQ_09420 PF00378 Enoyl-CoA hydratase/isomerase XCQ_09430 PF07670 Nucleoside recognition XCQ_09430 PF02421 Ferrous iron transport protein B XCQ_09430 PF07664 Ferrous iron transport protein B C terminus XCQ_09445 PF00155 Aminotransferase class I and II XCQ_09450 PF03475 3-alpha domain XCQ_09450 PF03473 MOSC domain XCQ_09455 PF05173 Dihydrodipicolinate reductase, C-terminus XCQ_09455 PF01113 Dihydrodipicolinate reductase, N-terminus XCQ_09460 PF00117 Glutamine amidotransferase class-I XCQ_09460 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain XCQ_09470 PF02142 MGS-like domain XCQ_09470 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XCQ_09470 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XCQ_09475 PF01272 Transcription elongation factor, GreA/GreB, C-term XCQ_09475 PF03449 Transcription elongation factor, N-terminal XCQ_09485 PF01368 DHH family XCQ_09485 PF02272 DHHA1 domain XCQ_09485 PF17768 RecJ OB domain XCQ_09525 PF04397 LytTr DNA-binding domain XCQ_09525 PF00072 Response regulator receiver domain XCQ_09535 PF00152 tRNA synthetases class II (D, K and N) XCQ_09535 PF01336 OB-fold nucleic acid binding domain XCQ_09540 PF00072 Response regulator receiver domain XCQ_09545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_09545 PF00512 His Kinase A (phospho-acceptor) domain XCQ_09545 PF01627 Hpt domain XCQ_09545 PF00072 Response regulator receiver domain XCQ_09550 PF00378 Enoyl-CoA hydratase/isomerase XCQ_09555 PF13193 AMP-binding enzyme C-terminal domain XCQ_09555 PF00501 AMP-binding enzyme XCQ_09565 PF00330 Aconitase family (aconitate hydratase) XCQ_09565 PF00694 Aconitase C-terminal domain XCQ_09580 PF11791 Aconitate B N-terminal domain XCQ_09580 PF06434 Aconitate hydratase 2 N-terminus XCQ_09580 PF00330 Aconitase family (aconitate hydratase) XCQ_09585 PF00561 alpha/beta hydrolase fold XCQ_09590 PF03707 Bacterial signalling protein N terminal repeat XCQ_09590 PF00990 Diguanylate cyclase, GGDEF domain XCQ_09590 PF00563 EAL domain XCQ_09595 PF00072 Response regulator receiver domain XCQ_09595 PF01339 CheB methylesterase XCQ_09600 PF03975 CheD chemotactic sensory transduction XCQ_09605 PF01739 CheR methyltransferase, SAM binding domain XCQ_09605 PF03705 CheR methyltransferase, all-alpha domain XCQ_09610 PF00672 HAMP domain XCQ_09610 PF02203 Tar ligand binding domain homologue XCQ_09610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_09620 PF01584 CheW-like domain XCQ_09625 PF07238 PilZ domain XCQ_09625 PF07317 Flagellar regulator YcgR XCQ_09630 PF00672 HAMP domain XCQ_09630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_09630 PF02203 Tar ligand binding domain homologue XCQ_09635 PF00672 HAMP domain XCQ_09635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_09635 PF02203 Tar ligand binding domain homologue XCQ_09640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_09640 PF02203 Tar ligand binding domain homologue XCQ_09640 PF00672 HAMP domain XCQ_09645 PF00672 HAMP domain XCQ_09645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_09645 PF02203 Tar ligand binding domain homologue XCQ_09650 PF00672 HAMP domain XCQ_09650 PF02203 Tar ligand binding domain homologue XCQ_09650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_09660 PF00672 HAMP domain XCQ_09660 PF02203 Tar ligand binding domain homologue XCQ_09660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_09665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_09665 PF00672 HAMP domain XCQ_09665 PF02203 Tar ligand binding domain homologue XCQ_09670 PF00672 HAMP domain XCQ_09670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_09670 PF02203 Tar ligand binding domain homologue XCQ_09675 PF00672 HAMP domain XCQ_09675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_09675 PF02203 Tar ligand binding domain homologue XCQ_09685 PF00672 HAMP domain XCQ_09685 PF02203 Tar ligand binding domain homologue XCQ_09685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_09690 PF08269 Cache domain XCQ_09690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_09705 PF01584 CheW-like domain XCQ_09705 PF01627 Hpt domain XCQ_09705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_09705 PF09078 CheY binding XCQ_09705 PF02895 Signal transducing histidine kinase, homodimeric domain XCQ_09710 PF00072 Response regulator receiver domain XCQ_09720 PF01584 CheW-like domain XCQ_09725 PF13614 AAA domain XCQ_09730 PF00691 OmpA family XCQ_09730 PF13677 Membrane MotB of proton-channel complex MotA/MotB XCQ_09735 PF01618 MotA/TolQ/ExbB proton channel family XCQ_09750 PF03793 PASTA domain XCQ_09750 PF00069 Protein kinase domain XCQ_09810 PF04055 Radical SAM superfamily XCQ_09810 PF13186 Iron-sulfur cluster-binding domain XCQ_09825 PF01584 CheW-like domain XCQ_09825 PF02895 Signal transducing histidine kinase, homodimeric domain XCQ_09825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_09825 PF01627 Hpt domain XCQ_09825 PF00072 Response regulator receiver domain XCQ_09830 PF04344 Chemotaxis phosphatase, CheZ XCQ_09835 PF00072 Response regulator receiver domain XCQ_09840 PF04542 Sigma-70 region 2 XCQ_09840 PF04539 Sigma-70 region 3 XCQ_09840 PF04545 Sigma-70, region 4 XCQ_09845 PF10609 NUBPL iron-transfer P-loop NTPase XCQ_09850 PF00448 SRP54-type protein, GTPase domain XCQ_09855 PF00771 FHIPEP family XCQ_09860 PF01312 FlhB HrpN YscU SpaS Family XCQ_09865 PF00563 EAL domain XCQ_09865 PF00990 Diguanylate cyclase, GGDEF domain XCQ_09865 PF03707 Bacterial signalling protein N terminal repeat XCQ_09870 PF00990 Diguanylate cyclase, GGDEF domain XCQ_09875 PF00990 Diguanylate cyclase, GGDEF domain XCQ_09880 PF01311 Bacterial export proteins, family 1 XCQ_09885 PF01313 Bacterial export proteins, family 3 XCQ_09890 PF00813 FliP family XCQ_09895 PF04347 Flagellar biosynthesis protein, FliO XCQ_09900 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XCQ_09905 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XCQ_09905 PF02154 Flagellar motor switch protein FliM XCQ_09925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCQ_09925 PF18269 T3SS EscN ATPase C-terminal domain XCQ_09935 PF01706 FliG C-terminal domain XCQ_09935 PF14841 FliG middle domain XCQ_09935 PF14842 FliG N-terminal domain XCQ_09940 PF08345 Flagellar M-ring protein C-terminal XCQ_09940 PF01514 Secretory protein of YscJ/FliF family XCQ_09945 PF02049 Flagellar hook-basal body complex protein FliE XCQ_09950 PF00534 Glycosyl transferases group 1 XCQ_09950 PF00535 Glycosyl transferase family 2 XCQ_09985 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XCQ_09985 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XCQ_09995 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XCQ_10000 PF00158 Sigma-54 interaction domain XCQ_10000 PF02954 Bacterial regulatory protein, Fis family XCQ_10000 PF06490 Flagellar regulatory protein FleQ XCQ_10005 PF00072 Response regulator receiver domain XCQ_10005 PF01339 CheB methylesterase XCQ_10010 PF04963 Sigma-54 factor, core binding domain XCQ_10010 PF04552 Sigma-54, DNA binding domain XCQ_10010 PF00309 Sigma-54 factor, Activator interacting domain (AID) XCQ_10015 PF00196 Bacterial regulatory proteins, luxR family XCQ_10015 PF00072 Response regulator receiver domain XCQ_10030 PF02561 Flagellar protein FliS XCQ_10035 PF07195 Flagellar hook-associated protein 2 C-terminus XCQ_10035 PF07196 Flagellin hook IN motif XCQ_10035 PF02465 Flagellar hook-associated protein 2 N-terminus XCQ_10045 PF00700 Bacterial flagellin C-terminal helical region XCQ_10045 PF00669 Bacterial flagellin N-terminal helical region XCQ_10050 PF00700 Bacterial flagellin C-terminal helical region XCQ_10050 PF00669 Bacterial flagellin N-terminal helical region XCQ_10055 PF07196 Flagellin hook IN motif XCQ_10055 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCQ_10060 PF10135 Rod binding protein XCQ_10060 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase XCQ_10065 PF02119 Flagellar P-ring protein XCQ_10070 PF02107 Flagellar L-ring protein XCQ_10075 PF00460 Flagella basal body rod protein XCQ_10075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCQ_10080 PF00460 Flagella basal body rod protein XCQ_10080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCQ_10085 PF07559 Flagellar basal body protein FlaE XCQ_10085 PF00460 Flagella basal body rod protein XCQ_10085 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCQ_10090 PF03963 Flagellar hook capping protein - N-terminal region XCQ_10095 PF00460 Flagella basal body rod protein XCQ_10095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XCQ_10105 PF00072 Response regulator receiver domain XCQ_10105 PF01584 CheW-like domain XCQ_10125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_10125 PF00512 His Kinase A (phospho-acceptor) domain XCQ_10125 PF00989 PAS fold XCQ_10125 PF13188 PAS domain XCQ_10125 PF13426 PAS domain XCQ_10130 PF03707 Bacterial signalling protein N terminal repeat XCQ_10130 PF00990 Diguanylate cyclase, GGDEF domain XCQ_10130 PF00563 EAL domain XCQ_10135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_10135 PF07730 Histidine kinase XCQ_10140 PF00990 Diguanylate cyclase, GGDEF domain XCQ_10140 PF00563 EAL domain XCQ_10140 PF03707 Bacterial signalling protein N terminal repeat XCQ_10150 PF00672 HAMP domain XCQ_10150 PF12729 Four helix bundle sensory module for signal transduction XCQ_10150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_10155 PF04356 Protein of unknown function (DUF489) XCQ_10165 PF00293 NUDIX domain XCQ_10170 PF02617 ATP-dependent Clp protease adaptor protein ClpS XCQ_10175 PF02861 Clp amino terminal domain, pathogenicity island component XCQ_10175 PF10431 C-terminal, D2-small domain, of ClpB protein XCQ_10175 PF17871 AAA lid domain XCQ_10175 PF07724 AAA domain (Cdc48 subfamily) XCQ_10175 PF00004 ATPase family associated with various cellular activities (AAA) XCQ_10180 PF01176 Translation initiation factor 1A / IF-1 XCQ_10185 PF03588 Leucyl/phenylalanyl-tRNA protein transferase XCQ_10195 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCQ_10200 PF17854 FtsK alpha domain XCQ_10200 PF09397 Ftsk gamma domain XCQ_10200 PF01580 FtsK/SpoIIIE family XCQ_10200 PF13491 4TM region of DNA translocase FtsK/SpoIIIE XCQ_10210 PF03548 Outer membrane lipoprotein carrier protein LolA XCQ_10220 PF00004 ATPase family associated with various cellular activities (AAA) XCQ_10220 PF16193 AAA C-terminal domain XCQ_10220 PF12002 MgsA AAA+ ATPase C terminal XCQ_10225 PF02537 CrcB-like protein, Camphor Resistance (CrcB) XCQ_10230 PF02803 Thiolase, C-terminal domain XCQ_10230 PF00108 Thiolase, N-terminal domain XCQ_10235 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XCQ_10235 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XCQ_10235 PF00378 Enoyl-CoA hydratase/isomerase XCQ_10245 PF00334 Nucleoside diphosphate kinase XCQ_10250 PF04055 Radical SAM superfamily XCQ_10260 PF13464 Domain of unknown function (DUF4115) XCQ_10270 PF01011 PQQ enzyme repeat XCQ_10270 PF13360 PQQ-like domain XCQ_10275 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal XCQ_10275 PF01926 50S ribosome-binding GTPase XCQ_10280 PF00994 Probable molybdopterin binding domain XCQ_10280 PF03454 MoeA C-terminal region (domain IV) XCQ_10280 PF03453 MoeA N-terminal region (domain I and II) XCQ_10285 PF00899 ThiF family XCQ_10315 PF13823 Alcohol dehydrogenase GroES-associated XCQ_10315 PF00107 Zinc-binding dehydrogenase XCQ_10315 PF08240 Alcohol dehydrogenase GroES-like domain XCQ_10325 PF03372 Endonuclease/Exonuclease/phosphatase family XCQ_10335 PF00994 Probable molybdopterin binding domain XCQ_10335 PF03454 MoeA C-terminal region (domain IV) XCQ_10335 PF03453 MoeA N-terminal region (domain I and II) XCQ_10340 PF12804 MobA-like NTP transferase domain XCQ_10350 PF00561 alpha/beta hydrolase fold XCQ_10355 PF01566 Natural resistance-associated macrophage protein XCQ_10360 PF02742 Iron dependent repressor, metal binding and dimerisation domain XCQ_10360 PF01325 Iron dependent repressor, N-terminal DNA binding domain XCQ_10365 PF14437 MafB19-like deaminase XCQ_10370 PF00929 Exonuclease XCQ_10375 PF05552 Conserved TM helix XCQ_10375 PF00924 Mechanosensitive ion channel XCQ_10380 PF00391 PEP-utilising enzyme, mobile domain XCQ_10380 PF02896 PEP-utilising enzyme, TIM barrel domain XCQ_10380 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain XCQ_10385 PF03618 Kinase/pyrophosphorylase XCQ_10405 PF01066 CDP-alcohol phosphatidyltransferase XCQ_10415 PF00561 alpha/beta hydrolase fold XCQ_10430 PF01266 FAD dependent oxidoreductase XCQ_10430 PF00355 Rieske [2Fe-2S] domain XCQ_10440 PF17674 HHH domain XCQ_10440 PF00575 S1 RNA binding domain XCQ_10440 PF09371 Tex-like protein N-terminal domain XCQ_10440 PF16921 Tex protein YqgF-like domain XCQ_10445 PF00512 His Kinase A (phospho-acceptor) domain XCQ_10445 PF00072 Response regulator receiver domain XCQ_10445 PF09308 LuxQ, periplasmic XCQ_10445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_10485 PF00034 Cytochrome c XCQ_10495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCQ_10500 PF00873 AcrB/AcrD/AcrF family XCQ_10505 PF00873 AcrB/AcrD/AcrF family XCQ_10510 PF01081 KDPG and KHG aldolase XCQ_10515 PF00920 Dehydratase family XCQ_10520 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase XCQ_10525 PF02685 Glucokinase XCQ_10530 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XCQ_10530 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XCQ_10535 PF00005 ABC transporter XCQ_10535 PF17912 MalK OB fold domain XCQ_10550 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XCQ_10555 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XCQ_10560 PF00890 FAD binding domain XCQ_10560 PF02910 Fumarate reductase flavoprotein C-term XCQ_10570 PF13085 2Fe-2S iron-sulfur cluster binding domain XCQ_10575 PF03937 Flavinator of succinate dehydrogenase XCQ_10585 PF02687 FtsX-like permease family XCQ_10585 PF12704 MacB-like periplasmic core domain XCQ_10590 PF00005 ABC transporter XCQ_10600 PF03772 Competence protein XCQ_10600 PF00753 Metallo-beta-lactamase superfamily XCQ_10605 PF01618 MotA/TolQ/ExbB proton channel family XCQ_10615 PF00664 ABC transporter transmembrane region XCQ_10615 PF00005 ABC transporter XCQ_10620 PF02606 Tetraacyldisaccharide-1-P 4'-kinase XCQ_10625 PF02348 Cytidylyltransferase XCQ_10630 PF01451 Low molecular weight phosphotyrosine protein phosphatase XCQ_10640 PF01541 GIY-YIG catalytic domain XCQ_10640 PF02151 UvrB/uvrC motif XCQ_10640 PF08459 UvrC Helix-hairpin-helix N-terminal XCQ_10645 PF01066 CDP-alcohol phosphatidyltransferase XCQ_10665 PF00550 Phosphopantetheine attachment site XCQ_10665 PF00501 AMP-binding enzyme XCQ_10665 PF13193 AMP-binding enzyme C-terminal domain XCQ_10665 PF00668 Condensation domain XCQ_10670 PF00975 Thioesterase domain XCQ_10670 PF00550 Phosphopantetheine attachment site XCQ_10670 PF13193 AMP-binding enzyme C-terminal domain XCQ_10670 PF00501 AMP-binding enzyme XCQ_10670 PF00668 Condensation domain XCQ_10695 PF00589 Phage integrase family XCQ_10705 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XCQ_10705 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XCQ_10705 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XCQ_10715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCQ_10725 PF00581 Rhodanese-like domain XCQ_10725 PF17773 UPF0176 acylphosphatase like domain XCQ_10730 PF00072 Response regulator receiver domain XCQ_10730 PF00196 Bacterial regulatory proteins, luxR family XCQ_10735 PF12111 Polyribonucleotide phosphorylase C terminal XCQ_10735 PF10150 Ribonuclease E/G family XCQ_10735 PF00575 S1 RNA binding domain XCQ_10740 PF00849 RNA pseudouridylate synthase XCQ_10740 PF01479 S4 domain XCQ_10745 PF11737 Protein of unknown function (DUF3300) XCQ_10750 PF02535 ZIP Zinc transporter XCQ_10760 PF01329 Pterin 4 alpha carbinolamine dehydratase XCQ_10765 PF01106 NifU-like domain XCQ_10810 PF12697 Alpha/beta hydrolase family XCQ_10810 PF08241 Methyltransferase domain XCQ_10820 PF00106 short chain dehydrogenase XCQ_10905 PF01494 FAD binding domain XCQ_10910 PF09335 SNARE associated Golgi protein XCQ_10920 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XCQ_10930 PF07995 Glucose / Sorbosone dehydrogenase XCQ_10940 PF00144 Beta-lactamase XCQ_10950 PF00072 Response regulator receiver domain XCQ_10950 PF04397 LytTr DNA-binding domain XCQ_10955 PF07694 5TMR of 5TMR-LYT XCQ_10955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_10955 PF06580 Histidine kinase XCQ_10965 PF03797 Autotransporter beta-domain XCQ_10965 PF00082 Subtilase family XCQ_10970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCQ_10975 PF00873 AcrB/AcrD/AcrF family XCQ_10985 PF13426 PAS domain XCQ_10985 PF08448 PAS fold XCQ_10985 PF00072 Response regulator receiver domain XCQ_10985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_10985 PF00512 His Kinase A (phospho-acceptor) domain XCQ_10990 PF00196 Bacterial regulatory proteins, luxR family XCQ_10990 PF00072 Response regulator receiver domain XCQ_10995 PF12951 Passenger-associated-transport-repeat XCQ_10995 PF12951 Passenger-associated-transport-repeat XCQ_11000 PF08447 PAS fold XCQ_11000 PF00563 EAL domain XCQ_11000 PF08448 PAS fold XCQ_11000 PF00990 Diguanylate cyclase, GGDEF domain XCQ_11020 PF05974 Domain of unknown function (DUF892) XCQ_11045 PF10414 Sirohaem synthase dimerisation region XCQ_11045 PF14824 Sirohaem biosynthesis protein central XCQ_11045 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XCQ_11060 PF05977 Transmembrane secretion effector XCQ_11075 PF00857 Isochorismatase family XCQ_11095 PF00072 Response regulator receiver domain XCQ_11095 PF00196 Bacterial regulatory proteins, luxR family XCQ_11115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_11115 PF03466 LysR substrate binding domain XCQ_11120 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus XCQ_11120 PF00361 Proton-conducting membrane transporter XCQ_11120 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XCQ_11125 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) XCQ_11135 PF01381 Helix-turn-helix XCQ_11140 PF05284 Protein of unknown function (DUF736) XCQ_11150 PF04002 RadC-like JAB domain XCQ_11170 PF13356 Arm DNA-binding domain XCQ_11170 PF00589 Phage integrase family XCQ_11185 PF07715 TonB-dependent Receptor Plug Domain XCQ_11185 PF00593 TonB dependent receptor XCQ_11205 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin XCQ_11230 PF07715 TonB-dependent Receptor Plug Domain XCQ_11230 PF00593 TonB dependent receptor XCQ_11240 PF10947 Protein of unknown function (DUF2628) XCQ_11275 PF00664 ABC transporter transmembrane region XCQ_11275 PF00005 ABC transporter XCQ_11275 PF03412 Peptidase C39 family XCQ_11285 PF13614 AAA domain XCQ_11325 PF01131 DNA topoisomerase XCQ_11325 PF01751 Toprim domain XCQ_11330 PF00145 C-5 cytosine-specific DNA methylase XCQ_11380 PF17761 DUF1016 N-terminal domain XCQ_11380 PF06250 YhcG PDDEXK nuclease domain XCQ_11390 PF00892 EamA-like transporter family XCQ_11395 PF00892 EamA-like transporter family XCQ_11405 PF02525 Flavodoxin-like fold XCQ_11410 PF00043 Glutathione S-transferase, C-terminal domain XCQ_11410 PF02798 Glutathione S-transferase, N-terminal domain XCQ_11415 PF05544 Proline racemase XCQ_11420 PF03358 NADPH-dependent FMN reductase XCQ_11430 PF07690 Major Facilitator Superfamily XCQ_11435 PF02311 AraC-like ligand binding domain XCQ_11435 PF12833 Helix-turn-helix domain XCQ_11580 PF12462 DNA helicase IV / RNA helicase N terminal XCQ_11580 PF00580 UvrD/REP helicase N-terminal domain XCQ_11580 PF13361 UvrD-like helicase C-terminal domain XCQ_11655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_11655 PF03466 LysR substrate binding domain XCQ_11660 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XCQ_11660 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XCQ_11665 PF03401 Tripartite tricarboxylate transporter family receptor XCQ_11680 PF04002 RadC-like JAB domain XCQ_11715 PF13356 Arm DNA-binding domain XCQ_11715 PF00589 Phage integrase family XCQ_11720 PF00117 Glutamine amidotransferase class-I XCQ_11720 PF00958 GMP synthase C terminal domain XCQ_11720 PF02540 NAD synthase XCQ_11725 PF00571 CBS domain XCQ_11725 PF00478 IMP dehydrogenase / GMP reductase domain XCQ_11730 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain XCQ_11730 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain XCQ_11740 PF00999 Sodium/hydrogen exchanger family XCQ_11740 PF02254 TrkA-N domain XCQ_11745 PF00483 Nucleotidyl transferase XCQ_11750 PF02719 Polysaccharide biosynthesis protein XCQ_11755 PF00953 Glycosyl transferase family 4 XCQ_11760 PF18073 Rubredoxin metal binding domain XCQ_11770 PF00216 Bacterial DNA-binding protein XCQ_11775 PF00575 S1 RNA binding domain XCQ_11780 PF02224 Cytidylate kinase XCQ_11785 PF00444 Ribosomal protein L36 XCQ_11795 PF04371 Porphyromonas-type peptidyl-arginine deiminase XCQ_11800 PF00795 Carbon-nitrogen hydrolase XCQ_11825 PF00528 Binding-protein-dependent transport system inner membrane component XCQ_11830 PF00528 Binding-protein-dependent transport system inner membrane component XCQ_11850 PF00356 Bacterial regulatory proteins, lacI family XCQ_11860 PF03795 YCII-related domain XCQ_11865 PF02616 Segregation and condensation protein ScpA XCQ_11870 PF04079 Segregation and condensation complex subunit ScpB XCQ_11875 PF00849 RNA pseudouridylate synthase XCQ_11875 PF01479 S4 domain XCQ_11890 PF00795 Carbon-nitrogen hydrolase XCQ_11895 PF00155 Aminotransferase class I and II XCQ_11900 PF00005 ABC transporter XCQ_11905 PF03379 CcmB protein XCQ_11910 PF01578 Cytochrome C assembly protein XCQ_11920 PF03100 CcmE XCQ_11925 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XCQ_11925 PF01578 Cytochrome C assembly protein XCQ_11930 PF08534 Redoxin XCQ_11935 PF03918 Cytochrome C biogenesis protein XCQ_11945 PF00561 alpha/beta hydrolase fold XCQ_11950 PF00313 'Cold-shock' DNA-binding domain XCQ_11955 PF00664 ABC transporter transmembrane region XCQ_11955 PF00005 ABC transporter XCQ_11960 PF00664 ABC transporter transmembrane region XCQ_11960 PF00005 ABC transporter XCQ_11965 PF01654 Cytochrome bd terminal oxidase subunit I XCQ_11970 PF02322 Cytochrome bd terminal oxidase subunit II XCQ_11990 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain XCQ_11990 PF02129 X-Pro dipeptidyl-peptidase (S15 family) XCQ_11995 PF00171 Aldehyde dehydrogenase family XCQ_12000 PF00696 Amino acid kinase family XCQ_12000 PF01472 PUA domain XCQ_12010 PF00206 Lyase XCQ_12015 PF01118 Semialdehyde dehydrogenase, NAD binding domain XCQ_12025 PF00696 Amino acid kinase family XCQ_12025 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase XCQ_12030 PF07687 Peptidase dimerisation domain XCQ_12030 PF01546 Peptidase family M20/M25/M40 XCQ_12040 PF00764 Arginosuccinate synthase XCQ_12045 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XCQ_12045 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XCQ_12055 PF09190 DALR domain XCQ_12055 PF01406 tRNA synthetases class I (C) catalytic domain XCQ_12060 PF02657 Fe-S metabolism associated domain XCQ_12070 PF01258 Prokaryotic dksA/traR C4-type zinc finger XCQ_12080 PF01809 Putative membrane protein insertion efficiency factor XCQ_12085 PF01979 Amidohydrolase family XCQ_12090 PF01551 Peptidase family M23 XCQ_12090 PF08460 Bacterial SH3 domain XCQ_12105 PF06751 Ethanolamine ammonia lyase large subunit (EutB) XCQ_12110 PF05985 Ethanolamine ammonia-lyase light chain (EutC) XCQ_12120 PF00753 Metallo-beta-lactamase superfamily XCQ_12150 PF00295 Glycosyl hydrolases family 28 XCQ_12160 PF13419 Haloacid dehalogenase-like hydrolase XCQ_12170 PF01979 Amidohydrolase family XCQ_12180 PF08207 Elongation factor P (EF-P) KOW-like domain XCQ_12180 PF09285 Elongation factor P, C-terminal XCQ_12180 PF01132 Elongation factor P (EF-P) OB domain XCQ_12185 PF04055 Radical SAM superfamily XCQ_12190 PF00563 EAL domain XCQ_12190 PF00990 Diguanylate cyclase, GGDEF domain XCQ_12190 PF03707 Bacterial signalling protein N terminal repeat XCQ_12190 PF13188 PAS domain XCQ_12200 PF00588 SpoU rRNA Methylase family XCQ_12205 PF00459 Inositol monophosphatase family XCQ_12210 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XCQ_12210 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XCQ_12215 PF00545 ribonuclease XCQ_12225 PF16326 ABC transporter C-terminal domain XCQ_12225 PF00005 ABC transporter XCQ_12225 PF12848 ABC transporter XCQ_12230 PF00270 DEAD/DEAH box helicase XCQ_12230 PF03880 DbpA RNA binding domain XCQ_12230 PF00271 Helicase conserved C-terminal domain XCQ_12235 PF00156 Phosphoribosyl transferase domain XCQ_12240 PF02696 Uncharacterized ACR, YdiU/UPF0061 family XCQ_12245 PF00135 Carboxylesterase family XCQ_12250 PF14497 Glutathione S-transferase, C-terminal domain XCQ_12250 PF02798 Glutathione S-transferase, N-terminal domain XCQ_12255 PF00313 'Cold-shock' DNA-binding domain XCQ_12260 PF07152 YaeQ protein XCQ_12270 PF00072 Response regulator receiver domain XCQ_12270 PF00563 EAL domain XCQ_12270 PF00990 Diguanylate cyclase, GGDEF domain XCQ_12275 PF01435 Peptidase family M48 XCQ_12280 PF00749 tRNA synthetases class I (E and Q), catalytic domain XCQ_12285 PF00106 short chain dehydrogenase XCQ_12290 PF05233 PHB accumulation regulatory domain XCQ_12290 PF07879 PHB/PHA accumulation regulator DNA-binding domain XCQ_12310 PF01119 DNA mismatch repair protein, C-terminal domain XCQ_12310 PF08676 MutL C terminal dimerisation domain XCQ_12315 PF01520 N-acetylmuramoyl-L-alanine amidase XCQ_12315 PF11741 AMIN domain XCQ_12320 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE XCQ_12325 PF03853 YjeF-related protein N-terminus XCQ_12325 PF01256 Carbohydrate kinase XCQ_12330 PF08331 Domain of unknown function (DUF1730) XCQ_12335 PF02601 Exonuclease VII, large subunit XCQ_12335 PF13742 OB-fold nucleic acid binding domain XCQ_12345 PF03781 Sulfatase-modifying factor enzyme 1 XCQ_12355 PF00570 HRDC domain XCQ_12355 PF01612 3'-5' exonuclease XCQ_12360 PF13298 DNA polymerase Ligase (LigD) XCQ_12360 PF01068 ATP dependent DNA ligase domain XCQ_12360 PF04679 ATP dependent DNA ligase C terminal region XCQ_12380 PF00589 Phage integrase family XCQ_12425 PF18327 Proline utilization A proline dehydrogenase N-terminal domain XCQ_12425 PF14850 DNA-binding domain of Proline dehydrogenase XCQ_12425 PF01619 Proline dehydrogenase XCQ_12425 PF00171 Aldehyde dehydrogenase family XCQ_12455 PF02384 N-6 DNA Methylase XCQ_12460 PF09572 XamI restriction endonuclease XCQ_12510 PF01584 CheW-like domain XCQ_12515 PF02743 Cache domain XCQ_12515 PF00672 HAMP domain XCQ_12515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_12520 PF02245 Methylpurine-DNA glycosylase (MPG) XCQ_12525 PF00271 Helicase conserved C-terminal domain XCQ_12525 PF08494 DEAD/H associated XCQ_12525 PF00270 DEAD/DEAH box helicase XCQ_12545 PF04386 Stringent starvation protein B XCQ_12550 PF00043 Glutathione S-transferase, C-terminal domain XCQ_12550 PF02798 Glutathione S-transferase, N-terminal domain XCQ_12555 PF02167 Cytochrome C1 family XCQ_12560 PF00032 Cytochrome b(C-terminal)/b6/petD XCQ_12560 PF00033 Cytochrome b/b6/petB XCQ_12565 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal XCQ_12565 PF00355 Rieske [2Fe-2S] domain XCQ_12570 PF01464 Transglycosylase SLT domain XCQ_12585 PF04055 Radical SAM superfamily XCQ_12585 PF01938 TRAM domain XCQ_12585 PF00919 Uncharacterized protein family UPF0004 XCQ_12590 PF02562 PhoH-like protein XCQ_12600 PF02130 Uncharacterized protein family UPF0054 XCQ_12610 PF00571 CBS domain XCQ_12610 PF03471 Transporter associated domain XCQ_12625 PF00171 Aldehyde dehydrogenase family XCQ_12630 PF00528 Binding-protein-dependent transport system inner membrane component XCQ_12635 PF00528 Binding-protein-dependent transport system inner membrane component XCQ_12640 PF00005 ABC transporter XCQ_12640 PF08402 TOBE domain XCQ_12645 PF02321 Outer membrane efflux protein XCQ_12650 PF07690 Major Facilitator Superfamily XCQ_12655 PF13533 Biotin-lipoyl like XCQ_12660 PF13416 Bacterial extracellular solute-binding protein XCQ_12665 PF00202 Aminotransferase class-III XCQ_12670 PF00120 Glutamine synthetase, catalytic domain XCQ_12675 PF07722 Peptidase C26 XCQ_12680 PF00120 Glutamine synthetase, catalytic domain XCQ_12685 PF01266 FAD dependent oxidoreductase XCQ_12690 PF00990 Diguanylate cyclase, GGDEF domain XCQ_12690 PF00072 Response regulator receiver domain XCQ_12695 PF01814 Hemerythrin HHE cation binding domain XCQ_12700 PF07690 Major Facilitator Superfamily XCQ_12700 PF00083 Sugar (and other) transporter XCQ_12710 PF00384 Molybdopterin oxidoreductase XCQ_12715 PF02634 FdhD/NarQ family XCQ_12720 PF07690 Major Facilitator Superfamily XCQ_12725 PF00202 Aminotransferase class-III XCQ_12735 PF04286 Protein of unknown function (DUF445) XCQ_12740 PF00512 His Kinase A (phospho-acceptor) domain XCQ_12740 PF01627 Hpt domain XCQ_12740 PF00072 Response regulator receiver domain XCQ_12740 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XCQ_12740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_12740 PF00672 HAMP domain XCQ_12745 PF00072 Response regulator receiver domain XCQ_12750 PF07690 Major Facilitator Superfamily XCQ_12760 PF05088 Bacterial NAD-glutamate dehydrogenase XCQ_12770 PF00529 HlyD membrane-fusion protein of T1SS XCQ_12770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCQ_12775 PF00873 AcrB/AcrD/AcrF family XCQ_12780 PF00356 Bacterial regulatory proteins, lacI family XCQ_12785 PF05524 PEP-utilising enzyme, N-terminal XCQ_12785 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XCQ_12785 PF00391 PEP-utilising enzyme, mobile domain XCQ_12785 PF00381 PTS HPr component phosphorylation site XCQ_12785 PF02896 PEP-utilising enzyme, TIM barrel domain XCQ_12790 PF00294 pfkB family carbohydrate kinase XCQ_12795 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit XCQ_12840 PF07549 SecD/SecF GG Motif XCQ_12840 PF02355 Protein export membrane protein XCQ_12845 PF13721 SecD export protein N-terminal TM region XCQ_12845 PF02355 Protein export membrane protein XCQ_12845 PF07549 SecD/SecF GG Motif XCQ_12850 PF02699 Preprotein translocase subunit XCQ_12855 PF01702 Queuine tRNA-ribosyltransferase XCQ_12860 PF02547 Queuosine biosynthesis protein XCQ_12900 PF00759 Glycosyl hydrolase family 9 XCQ_12900 PF02927 Cellulase N-terminal ig-like domain XCQ_12910 PF00037 4Fe-4S binding domain XCQ_12920 PF01467 Cytidylyltransferase-like XCQ_12930 PF00183 Hsp90 protein XCQ_12930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_12950 PF00593 TonB dependent receptor XCQ_12950 PF07715 TonB-dependent Receptor Plug Domain XCQ_12960 PF04616 Glycosyl hydrolases family 43 XCQ_12965 PF07532 Bacterial Ig-like domain (group 4) XCQ_12970 PF00593 TonB dependent receptor XCQ_12970 PF07715 TonB-dependent Receptor Plug Domain XCQ_12980 PF09286 Pro-kumamolisin, activation domain XCQ_12980 PF00082 Subtilase family XCQ_13005 PF13520 Amino acid permease XCQ_13020 PF00557 Metallopeptidase family M24 XCQ_13020 PF01321 Creatinase/Prolidase N-terminal domain XCQ_13025 PF00171 Aldehyde dehydrogenase family XCQ_13030 PF00701 Dihydrodipicolinate synthetase family XCQ_13035 PF04324 BFD-like [2Fe-2S] binding domain XCQ_13035 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCQ_13045 PF01266 FAD dependent oxidoreductase XCQ_13050 PF05544 Proline racemase XCQ_13060 PF00448 SRP54-type protein, GTPase domain XCQ_13060 PF02881 SRP54-type protein, helical bundle domain XCQ_13065 PF00730 HhH-GPD superfamily base excision DNA repair protein XCQ_13065 PF10576 Iron-sulfur binding domain of endonuclease III XCQ_13065 PF00633 Helix-hairpin-helix motif XCQ_13065 PF14815 NUDIX domain XCQ_13070 PF04362 Bacterial Fe(2+) trafficking XCQ_13075 PF00072 Response regulator receiver domain XCQ_13075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_13075 PF13426 PAS domain XCQ_13105 PF08212 Lipocalin-like domain XCQ_13120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCQ_13120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCQ_13120 PF02770 Acyl-CoA dehydrogenase, middle domain XCQ_13120 PF12806 Acetyl-CoA dehydrogenase C-terminal like XCQ_13130 PF13292 1-deoxy-D-xylulose-5-phosphate synthase XCQ_13130 PF02779 Transketolase, pyrimidine binding domain XCQ_13130 PF02780 Transketolase, C-terminal domain XCQ_13150 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XCQ_13155 PF00753 Metallo-beta-lactamase superfamily XCQ_13155 PF16123 Hydroxyacylglutathione hydrolase C-terminus XCQ_13160 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XCQ_13160 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XCQ_13175 PF03808 Glycosyl transferase WecB/TagA/CpsF family XCQ_13190 PF14667 Polysaccharide biosynthesis C-terminal domain XCQ_13200 PF00534 Glycosyl transferases group 1 XCQ_13200 PF13439 Glycosyltransferase Family 4 XCQ_13220 PF02397 Bacterial sugar transferase XCQ_13240 PF13411 MerR HTH family regulatory protein XCQ_13245 PF00216 Bacterial DNA-binding protein XCQ_13250 PF01588 Putative tRNA binding domain XCQ_13250 PF03484 tRNA synthetase B5 domain XCQ_13250 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain XCQ_13250 PF03483 B3/4 domain XCQ_13250 PF03147 Ferredoxin-fold anticodon binding domain XCQ_13255 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain XCQ_13255 PF01409 tRNA synthetases class II core domain (F) XCQ_13260 PF00453 Ribosomal protein L20 XCQ_13265 PF01632 Ribosomal protein L35 XCQ_13270 PF00707 Translation initiation factor IF-3, C-terminal domain XCQ_13270 PF05198 Translation initiation factor IF-3, N-terminal domain XCQ_13275 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XCQ_13275 PF03129 Anticodon binding domain XCQ_13275 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XCQ_13275 PF02824 TGS domain XCQ_13280 PF00356 Bacterial regulatory proteins, lacI family XCQ_13285 PF00686 Starch binding domain XCQ_13285 PF00128 Alpha amylase, catalytic domain XCQ_13290 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 XCQ_13300 PF14508 Glycosyl-hydrolase 97 N-terminal XCQ_13300 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation XCQ_13300 PF10566 Glycoside hydrolase 97 XCQ_13315 PF00128 Alpha amylase, catalytic domain XCQ_13365 PF03135 CagE, TrbE, VirB family, component of type IV transporter system XCQ_13370 PF05101 Type IV secretory pathway, VirB3-like protein XCQ_13380 PF01464 Transglycosylase SLT domain XCQ_13385 PF00437 Type II/IV secretion system protein XCQ_13390 PF03743 Bacterial conjugation TrbI-like protein XCQ_13410 PF02534 Type IV secretory system Conjugative DNA transfer XCQ_13425 PF04851 Type III restriction enzyme, res subunit XCQ_13425 PF02151 UvrB/uvrC motif XCQ_13425 PF12344 Ultra-violet resistance protein B XCQ_13425 PF17757 UvrB interaction domain XCQ_13425 PF00271 Helicase conserved C-terminal domain XCQ_13505 PF01555 DNA methylase XCQ_13560 PF00182 Chitinase class I XCQ_13620 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor XCQ_13620 PF07963 Prokaryotic N-terminal methylation motif XCQ_13625 PF05567 Neisseria PilC beta-propeller domain XCQ_13650 PF07694 5TMR of 5TMR-LYT XCQ_13650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_13650 PF06580 Histidine kinase XCQ_13655 PF11892 Domain of unknown function (DUF3412) XCQ_13655 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases XCQ_13655 PF03641 Possible lysine decarboxylase XCQ_13660 PF00593 TonB dependent receptor XCQ_13665 PF01914 MarC family integral membrane protein XCQ_13675 PF00462 Glutaredoxin XCQ_13680 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XCQ_13680 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XCQ_13685 PF02222 ATP-grasp domain XCQ_13685 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain XCQ_13690 PF00731 AIR carboxylase XCQ_13700 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain XCQ_13700 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain XCQ_13710 PF00013 KH domain XCQ_13710 PF01138 3' exoribonuclease family, domain 1 XCQ_13710 PF03725 3' exoribonuclease family, domain 2 XCQ_13710 PF00575 S1 RNA binding domain XCQ_13710 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain XCQ_13715 PF00312 Ribosomal protein S15 XCQ_13720 PF01509 TruB family pseudouridylate synthase (N terminal domain) XCQ_13720 PF16198 tRNA pseudouridylate synthase B C-terminal domain XCQ_13720 PF09157 Pseudouridine synthase II TruB, C-terminal XCQ_13725 PF02033 Ribosome-binding factor A XCQ_13730 PF04760 Translation initiation factor IF-2, N-terminal region XCQ_13730 PF08364 Bacterial translation initiation factor IF-2 associated region XCQ_13730 PF11987 Translation-initiation factor 2 XCQ_13730 PF00009 Elongation factor Tu GTP binding domain XCQ_13735 PF00575 S1 RNA binding domain XCQ_13735 PF08529 NusA N-terminal domain XCQ_13735 PF13184 NusA-like KH domain XCQ_13740 PF02576 RimP N-terminal domain XCQ_13740 PF17384 RimP C-terminal SH3 domain XCQ_13750 PF00361 Proton-conducting membrane transporter XCQ_13755 PF00361 Proton-conducting membrane transporter XCQ_13755 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus XCQ_13760 PF00361 Proton-conducting membrane transporter XCQ_13760 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XCQ_13765 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XCQ_13770 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 XCQ_13775 PF12838 4Fe-4S dicluster domain XCQ_13780 PF00146 NADH dehydrogenase XCQ_13785 PF00384 Molybdopterin oxidoreductase XCQ_13785 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XCQ_13785 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal XCQ_13790 PF10531 SLBB domain XCQ_13790 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region XCQ_13790 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit XCQ_13800 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit XCQ_13805 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit XCQ_13810 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit XCQ_13815 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 XCQ_13830 PF00121 Triosephosphate isomerase XCQ_13835 PF00106 short chain dehydrogenase XCQ_13850 PF03707 Bacterial signalling protein N terminal repeat XCQ_13850 PF00563 EAL domain XCQ_13850 PF00990 Diguanylate cyclase, GGDEF domain XCQ_13865 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XCQ_13865 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XCQ_13865 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XCQ_13865 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XCQ_13870 PF01039 Carboxyl transferase domain XCQ_13870 PF17848 Acetyl-coA carboxylase zinc finger domain XCQ_13875 PF00290 Tryptophan synthase alpha chain XCQ_13885 PF00291 Pyridoxal-phosphate dependent enzyme XCQ_13890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_13890 PF03466 LysR substrate binding domain XCQ_13895 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase XCQ_13900 PF01416 tRNA pseudouridine synthase XCQ_13920 PF01118 Semialdehyde dehydrogenase, NAD binding domain XCQ_13920 PF02774 Semialdehyde dehydrogenase, dimerisation domain XCQ_13925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XCQ_13925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XCQ_13930 PF01264 Chorismate synthase XCQ_13935 PF05175 Methyltransferase small domain XCQ_13940 PF02630 SCO1/SenC XCQ_13945 PF02666 Phosphatidylserine decarboxylase XCQ_13955 PF05872 Bacterial protein of unknown function (DUF853) XCQ_13960 PF00293 NUDIX domain XCQ_13975 PF03449 Transcription elongation factor, N-terminal XCQ_13975 PF01272 Transcription elongation factor, GreA/GreB, C-term XCQ_13980 PF00919 Uncharacterized protein family UPF0004 XCQ_13980 PF18693 TRAM domain XCQ_13980 PF04055 Radical SAM superfamily XCQ_13985 PF01738 Dienelactone hydrolase family XCQ_14005 PF00692 dUTPase XCQ_14010 PF10609 NUBPL iron-transfer P-loop NTPase XCQ_14015 PF00593 TonB dependent receptor XCQ_14015 PF07715 TonB-dependent Receptor Plug Domain XCQ_14030 PF01431 Peptidase family M13 XCQ_14030 PF05649 Peptidase family M13 XCQ_14035 PF01431 Peptidase family M13 XCQ_14035 PF05649 Peptidase family M13 XCQ_14050 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain XCQ_14055 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCQ_14055 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XCQ_14060 PF01266 FAD dependent oxidoreductase XCQ_14065 PF04235 Protein of unknown function (DUF418) XCQ_14070 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XCQ_14075 PF00877 NlpC/P60 family XCQ_14080 PF00877 NlpC/P60 family XCQ_14095 PF00375 Sodium:dicarboxylate symporter family XCQ_14100 PF00245 Alkaline phosphatase XCQ_14105 PF01171 PP-loop family XCQ_14105 PF09179 TilS substrate binding domain XCQ_14105 PF11734 TilS substrate C-terminal domain XCQ_14110 PF02609 Exonuclease VII small subunit XCQ_14115 PF00348 Polyprenyl synthetase XCQ_14120 PF14521 Lysine-specific metallo-endopeptidase XCQ_14130 PF01523 Putative modulator of DNA gyrase XCQ_14135 PF04751 Protein of unknown function (DUF615) XCQ_14140 PF01523 Putative modulator of DNA gyrase XCQ_14150 PF13116 Protein of unknown function XCQ_14150 PF13502 AsmA-like C-terminal region XCQ_14155 PF00575 S1 RNA binding domain XCQ_14155 PF10150 Ribonuclease E/G family XCQ_14160 PF02545 Maf-like protein XCQ_14165 PF04402 Protein of unknown function (DUF541) XCQ_14180 PF02590 Predicted SPOUT methyltransferase XCQ_14195 PF01467 Cytidylyltransferase-like XCQ_14210 PF08264 Anticodon-binding domain of tRNA XCQ_14210 PF00133 tRNA synthetases class I (I, L, M and V) XCQ_14210 PF13603 Leucyl-tRNA synthetase, Domain 2 XCQ_14220 PF00085 Thioredoxin XCQ_14245 PF04070 Domain of unknown function (DUF378) XCQ_14250 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XCQ_14260 PF03466 LysR substrate binding domain XCQ_14260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_14290 PF00005 ABC transporter XCQ_14290 PF00664 ABC transporter transmembrane region XCQ_14305 PF00873 AcrB/AcrD/AcrF family XCQ_14320 PF02321 Outer membrane efflux protein XCQ_14325 PF00486 Transcriptional regulatory protein, C terminal XCQ_14325 PF00072 Response regulator receiver domain XCQ_14330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_14330 PF00512 His Kinase A (phospho-acceptor) domain XCQ_14330 PF00672 HAMP domain XCQ_14335 PF00999 Sodium/hydrogen exchanger family XCQ_14340 PF00144 Beta-lactamase XCQ_14345 PF03737 Aldolase/RraA XCQ_14360 PF00990 Diguanylate cyclase, GGDEF domain XCQ_14365 PF01479 S4 domain XCQ_14365 PF00849 RNA pseudouridylate synthase XCQ_14370 PF00563 EAL domain XCQ_14370 PF00990 Diguanylate cyclase, GGDEF domain XCQ_14370 PF08448 PAS fold XCQ_14375 PF03880 DbpA RNA binding domain XCQ_14375 PF00270 DEAD/DEAH box helicase XCQ_14375 PF00271 Helicase conserved C-terminal domain XCQ_14425 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain XCQ_14425 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain XCQ_14435 PF00654 Voltage gated chloride channel XCQ_14440 PF08240 Alcohol dehydrogenase GroES-like domain XCQ_14440 PF00107 Zinc-binding dehydrogenase XCQ_14460 PF07715 TonB-dependent Receptor Plug Domain XCQ_14460 PF00593 TonB dependent receptor XCQ_14470 PF00082 Subtilase family XCQ_14470 PF01483 Proprotein convertase P-domain XCQ_14490 PF00248 Aldo/keto reductase family XCQ_14500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_14500 PF03466 LysR substrate binding domain XCQ_14510 PF06719 AraC-type transcriptional regulator N-terminus XCQ_14510 PF12833 Helix-turn-helix domain XCQ_14520 PF00440 Bacterial regulatory proteins, tetR family XCQ_14520 PF16859 Tetracyclin repressor-like, C-terminal domain XCQ_14525 PF02321 Outer membrane efflux protein XCQ_14530 PF00873 AcrB/AcrD/AcrF family XCQ_14535 PF00529 HlyD membrane-fusion protein of T1SS XCQ_14535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCQ_14545 PF01475 Ferric uptake regulator family XCQ_14550 PF00749 tRNA synthetases class I (E and Q), catalytic domain XCQ_14575 PF06123 Inner membrane protein CreD XCQ_14590 PF00512 His Kinase A (phospho-acceptor) domain XCQ_14590 PF00672 HAMP domain XCQ_14590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_14595 PF00072 Response regulator receiver domain XCQ_14595 PF00486 Transcriptional regulatory protein, C terminal XCQ_14600 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ XCQ_14610 PF00271 Helicase conserved C-terminal domain XCQ_14610 PF00270 DEAD/DEAH box helicase XCQ_14610 PF02559 CarD-like/TRCF domain XCQ_14610 PF17757 UvrB interaction domain XCQ_14610 PF03461 TRCF domain XCQ_14640 PF09078 CheY binding XCQ_14640 PF02895 Signal transducing histidine kinase, homodimeric domain XCQ_14640 PF01584 CheW-like domain XCQ_14640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_14640 PF01627 Hpt domain XCQ_14645 PF00672 HAMP domain XCQ_14645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_14645 PF02203 Tar ligand binding domain homologue XCQ_14650 PF01584 CheW-like domain XCQ_14655 PF00990 Diguanylate cyclase, GGDEF domain XCQ_14655 PF00563 EAL domain XCQ_14655 PF13426 PAS domain XCQ_14660 PF01739 CheR methyltransferase, SAM binding domain XCQ_14660 PF03705 CheR methyltransferase, all-alpha domain XCQ_14665 PF01339 CheB methylesterase XCQ_14665 PF00072 Response regulator receiver domain XCQ_14670 PF13091 PLD-like domain XCQ_14675 PF05649 Peptidase family M13 XCQ_14675 PF01431 Peptidase family M13 XCQ_14685 PF00300 Histidine phosphatase superfamily (branch 1) XCQ_14690 PF04493 Endonuclease V XCQ_14700 PF02678 Pirin XCQ_14700 PF05726 Pirin C-terminal cupin domain XCQ_14715 PF02678 Pirin XCQ_14715 PF05726 Pirin C-terminal cupin domain XCQ_14720 PF13722 5TM C-terminal transporter carbon starvation CstA XCQ_14720 PF02554 Carbon starvation protein CstA XCQ_14725 PF04328 Selenoprotein, putative XCQ_14765 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XCQ_14765 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XCQ_14770 PF03450 CO dehydrogenase flavoprotein C-terminal domain XCQ_14770 PF00941 FAD binding domain in molybdopterin dehydrogenase XCQ_14775 PF00111 2Fe-2S iron-sulfur cluster binding domain XCQ_14775 PF01799 [2Fe-2S] binding domain XCQ_14775 PF10518 TAT (twin-arginine translocation) pathway signal sequence XCQ_14785 PF08240 Alcohol dehydrogenase GroES-like domain XCQ_14785 PF14765 Polyketide synthase dehydratase XCQ_14785 PF00550 Phosphopantetheine attachment site XCQ_14785 PF08659 KR domain XCQ_14785 PF02801 Beta-ketoacyl synthase, C-terminal domain XCQ_14785 PF00109 Beta-ketoacyl synthase, N-terminal domain XCQ_14785 PF16197 Ketoacyl-synthetase C-terminal extension XCQ_14785 PF09277 Erythronolide synthase, docking XCQ_14785 PF08990 Erythronolide synthase docking XCQ_14785 PF00698 Acyl transferase domain XCQ_14790 PF00990 Diguanylate cyclase, GGDEF domain XCQ_14790 PF00563 EAL domain XCQ_14790 PF01590 GAF domain XCQ_14790 PF00360 Phytochrome region XCQ_14795 PF00436 Single-strand binding protein family XCQ_14800 PF00348 Polyprenyl synthetase XCQ_14810 PF02875 Mur ligase family, glutamate ligase domain XCQ_14810 PF08245 Mur ligase middle domain XCQ_14825 PF00696 Amino acid kinase family XCQ_14825 PF01842 ACT domain XCQ_14830 PF02567 Phenazine biosynthesis-like protein XCQ_14835 PF02567 Phenazine biosynthesis-like protein XCQ_14845 PF02566 OsmC-like protein XCQ_14850 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XCQ_14850 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XCQ_14855 PF03652 Holliday junction resolvase XCQ_14860 PF02622 Uncharacterized ACR, COG1678 XCQ_14865 PF00117 Glutamine amidotransferase class-I XCQ_14865 PF00958 GMP synthase C terminal domain XCQ_14865 PF03352 Methyladenine glycosylase XCQ_14865 PF13302 Acetyltransferase (GNAT) domain XCQ_14865 PF13673 Acetyltransferase (GNAT) domain XCQ_14880 PF03211 Pectate lyase XCQ_14885 PF00437 Type II/IV secretion system protein XCQ_14890 PF00437 Type II/IV secretion system protein XCQ_14895 PF01168 Alanine racemase, N-terminal domain XCQ_14900 PF03807 NADP oxidoreductase coenzyme F420-dependent XCQ_14900 PF14748 Pyrroline-5-carboxylate reductase dimerisation XCQ_14910 PF01551 Peptidase family M23 XCQ_14930 PF01965 DJ-1/PfpI family XCQ_14940 PF02082 Transcriptional regulator XCQ_14945 PF01458 Uncharacterized protein family (UPF0051) XCQ_14950 PF00005 ABC transporter XCQ_14955 PF01458 Uncharacterized protein family (UPF0051) XCQ_14960 PF00266 Aminotransferase class-V XCQ_14970 PF00355 Rieske [2Fe-2S] domain XCQ_14975 PF00593 TonB dependent receptor XCQ_14975 PF07715 TonB-dependent Receptor Plug Domain XCQ_14980 PF13640 2OG-Fe(II) oxygenase superfamily XCQ_14980 PF18331 PKHD-type hydroxylase C-terminal domain XCQ_15005 PF02424 ApbE family XCQ_15010 PF00667 FAD binding domain XCQ_15010 PF00258 Flavodoxin XCQ_15010 PF00175 Oxidoreductase NAD-binding domain XCQ_15030 PF01546 Peptidase family M20/M25/M40 XCQ_15030 PF07687 Peptidase dimerisation domain XCQ_15040 PF01636 Phosphotransferase enzyme family XCQ_15045 PF00483 Nucleotidyl transferase XCQ_15050 PF00308 Bacterial dnaA protein XCQ_15055 PF01594 AI-2E family transporter XCQ_15065 PF02769 AIR synthase related protein, C-terminal domain XCQ_15065 PF00586 AIR synthase related protein, N-terminal domain XCQ_15075 PF00551 Formyl transferase XCQ_15095 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XCQ_15100 PF01722 BolA-like protein XCQ_15105 PF01380 SIS domain XCQ_15105 PF00571 CBS domain XCQ_15120 PF03968 OstA-like protein XCQ_15125 PF00005 ABC transporter XCQ_15130 PF04963 Sigma-54 factor, core binding domain XCQ_15130 PF00309 Sigma-54 factor, Activator interacting domain (AID) XCQ_15130 PF04552 Sigma-54, DNA binding domain XCQ_15135 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein XCQ_15140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XCQ_15145 PF02603 HPr Serine kinase N terminus XCQ_15145 PF07475 HPr Serine kinase C-terminal domain XCQ_15150 PF03668 P-loop ATPase protein family XCQ_15160 PF00381 PTS HPr component phosphorylation site XCQ_15165 PF05524 PEP-utilising enzyme, N-terminal XCQ_15165 PF00391 PEP-utilising enzyme, mobile domain XCQ_15165 PF02896 PEP-utilising enzyme, TIM barrel domain XCQ_15170 PF03448 MgtE intracellular N domain XCQ_15170 PF00571 CBS domain XCQ_15170 PF01769 Divalent cation transporter XCQ_15175 PF00756 Putative esterase XCQ_15185 PF02322 Cytochrome bd terminal oxidase subunit II XCQ_15190 PF01654 Cytochrome bd terminal oxidase subunit I XCQ_15200 PF00324 Amino acid permease XCQ_15205 PF00544 Pectate lyase XCQ_15210 PF00561 alpha/beta hydrolase fold XCQ_15220 PF00196 Bacterial regulatory proteins, luxR family XCQ_15230 PF00324 Amino acid permease XCQ_15250 PF12706 Beta-lactamase superfamily domain XCQ_15255 PF04820 Tryptophan halogenase XCQ_15280 PF09278 MerR, DNA binding XCQ_15280 PF00376 MerR family regulatory protein XCQ_15285 PF07690 Major Facilitator Superfamily XCQ_15295 PF03738 Glutathionylspermidine synthase preATP-grasp XCQ_15320 PF04012 PspA/IM30 family XCQ_15330 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region XCQ_15330 PF01243 Pyridoxamine 5'-phosphate oxidase XCQ_15335 PF01202 Shikimate kinase XCQ_15340 PF01761 3-dehydroquinate synthase XCQ_15350 PF01208 Uroporphyrinogen decarboxylase (URO-D) XCQ_15420 PF00158 Sigma-54 interaction domain XCQ_15420 PF02954 Bacterial regulatory protein, Fis family XCQ_15420 PF01590 GAF domain XCQ_15425 PF07690 Major Facilitator Superfamily XCQ_15430 PF00072 Response regulator receiver domain XCQ_15430 PF01627 Hpt domain XCQ_15430 PF00512 His Kinase A (phospho-acceptor) domain XCQ_15430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_15430 PF00672 HAMP domain XCQ_15430 PF17149 Periplasmic sensor domain found in signal transduction proteins XCQ_15435 PF00512 His Kinase A (phospho-acceptor) domain XCQ_15435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_15435 PF00672 HAMP domain XCQ_15435 PF17149 Periplasmic sensor domain found in signal transduction proteins XCQ_15435 PF01627 Hpt domain XCQ_15435 PF00072 Response regulator receiver domain XCQ_15445 PF00512 His Kinase A (phospho-acceptor) domain XCQ_15445 PF00072 Response regulator receiver domain XCQ_15445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_15445 PF01627 Hpt domain XCQ_15450 PF04264 YceI-like domain XCQ_15470 PF03313 Serine dehydratase alpha chain XCQ_15470 PF03315 Serine dehydratase beta chain XCQ_15475 PF12697 Alpha/beta hydrolase family XCQ_15480 PF00742 Homoserine dehydrogenase XCQ_15480 PF03447 Homoserine dehydrogenase, NAD binding domain XCQ_15480 PF00696 Amino acid kinase family XCQ_15485 PF01053 Cys/Met metabolism PLP-dependent enzyme XCQ_15490 PF00561 alpha/beta hydrolase fold XCQ_15495 PF01476 LysM domain XCQ_15495 PF01551 Peptidase family M23 XCQ_15495 PF08525 Opacity-associated protein A N-terminal motif XCQ_15500 PF00009 Elongation factor Tu GTP binding domain XCQ_15500 PF16658 Class II release factor RF3, C-terminal domain XCQ_15505 PF03006 Haemolysin-III related XCQ_15510 PF05170 AsmA family XCQ_15515 PF00571 CBS domain XCQ_15515 PF00478 IMP dehydrogenase / GMP reductase domain XCQ_15520 PF00535 Glycosyl transferase family 2 XCQ_15525 PF00912 Transglycosylase XCQ_15530 PF01430 Hsp33 protein XCQ_15540 PF07715 TonB-dependent Receptor Plug Domain XCQ_15540 PF00593 TonB dependent receptor XCQ_15550 PF00440 Bacterial regulatory proteins, tetR family XCQ_15555 PF00561 alpha/beta hydrolase fold XCQ_15560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XCQ_15560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XCQ_15560 PF09317 Domain of unknown function (DUF1974) XCQ_15590 PF01597 Glycine cleavage H-protein XCQ_15595 PF01571 Aminomethyltransferase folate-binding domain XCQ_15595 PF08669 Glycine cleavage T-protein C-terminal barrel domain XCQ_15610 PF02694 Uncharacterised BCR, YnfA/UPF0060 family XCQ_15615 PF03819 MazG nucleotide pyrophosphohydrolase domain XCQ_15620 PF00459 Inositol monophosphatase family XCQ_15625 PF00293 NUDIX domain XCQ_15630 PF00202 Aminotransferase class-III XCQ_15635 PF04452 RNA methyltransferase XCQ_15640 PF02685 Glucokinase XCQ_15655 PF01476 LysM domain XCQ_15655 PF00704 Glycosyl hydrolases family 18 XCQ_15660 PF07691 PA14 domain XCQ_15660 PF02838 Glycosyl hydrolase family 20, domain 2 XCQ_15660 PF00728 Glycosyl hydrolase family 20, catalytic domain XCQ_15670 PF14310 Fibronectin type III-like domain XCQ_15670 PF07691 PA14 domain XCQ_15670 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCQ_15670 PF00933 Glycosyl hydrolase family 3 N terminal domain XCQ_15680 PF01301 Glycosyl hydrolases family 35 XCQ_15685 PF13520 Amino acid permease XCQ_15695 PF11975 Family 4 glycosyl hydrolase C-terminal domain XCQ_15695 PF02056 Family 4 glycosyl hydrolase XCQ_15705 PF07971 Glycosyl hydrolase family 92 XCQ_15705 PF17678 Glycosyl hydrolase family 92 N-terminal domain XCQ_15710 PF01301 Glycosyl hydrolases family 35 XCQ_15740 PF03932 CutC family XCQ_15745 PF01112 Asparaginase XCQ_15750 PF13302 Acetyltransferase (GNAT) domain XCQ_15765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_15765 PF01627 Hpt domain XCQ_15765 PF01584 CheW-like domain XCQ_15765 PF02895 Signal transducing histidine kinase, homodimeric domain XCQ_15765 PF00072 Response regulator receiver domain XCQ_15770 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term XCQ_15770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_15775 PF01584 CheW-like domain XCQ_15780 PF00072 Response regulator receiver domain XCQ_15785 PF00072 Response regulator receiver domain XCQ_15790 PF02951 Prokaryotic glutathione synthetase, N-terminal domain XCQ_15790 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain XCQ_15800 PF03747 ADP-ribosylglycohydrolase XCQ_15805 PF00814 Glycoprotease family XCQ_15810 PF13307 Helicase C-terminal domain XCQ_15810 PF04851 Type III restriction enzyme, res subunit XCQ_15820 PF14814 Bifunctional transglycosylase second domain XCQ_15820 PF00905 Penicillin binding protein transpeptidase domain XCQ_15820 PF00912 Transglycosylase XCQ_15825 PF00535 Glycosyl transferase family 2 XCQ_15835 PF13291 ACT domain XCQ_15835 PF04607 Region found in RelA / SpoT proteins XCQ_15835 PF02824 TGS domain XCQ_15840 PF08042 PqqA family XCQ_15845 PF12706 Beta-lactamase superfamily domain XCQ_15850 PF03070 TENA/THI-4/PQQC family XCQ_15855 PF05402 Coenzyme PQQ synthesis protein D (PqqD) XCQ_15860 PF13186 Iron-sulfur cluster-binding domain XCQ_15860 PF04055 Radical SAM superfamily XCQ_15875 PF02685 Glucokinase XCQ_15890 PF04408 Helicase associated domain (HA2) XCQ_15890 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold XCQ_15890 PF00271 Helicase conserved C-terminal domain XCQ_15890 PF11898 Domain of unknown function (DUF3418) XCQ_15890 PF00270 DEAD/DEAH box helicase XCQ_15895 PF00210 Ferritin-like domain XCQ_15900 PF09382 RQC domain XCQ_15900 PF16124 RecQ zinc-binding XCQ_15900 PF00570 HRDC domain XCQ_15900 PF00271 Helicase conserved C-terminal domain XCQ_15900 PF00270 DEAD/DEAH box helicase XCQ_15930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_15930 PF02203 Tar ligand binding domain homologue XCQ_15930 PF00672 HAMP domain XCQ_15935 PF01810 LysE type translocator XCQ_15940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_15940 PF03466 LysR substrate binding domain XCQ_15950 PF13581 Histidine kinase-like ATPase domain XCQ_15950 PF07536 HWE histidine kinase XCQ_15950 PF13426 PAS domain XCQ_15955 PF06508 Queuosine biosynthesis protein QueC XCQ_15965 PF04055 Radical SAM superfamily XCQ_15975 PF00691 OmpA family XCQ_15980 PF04052 TolB amino-terminal domain XCQ_15980 PF07676 WD40-like Beta Propeller Repeat XCQ_15990 PF02472 Biopolymer transport protein ExbD/TolR XCQ_15995 PF01618 MotA/TolQ/ExbB proton channel family XCQ_16000 PF03061 Thioesterase superfamily XCQ_16005 PF17864 RuvB AAA lid domain XCQ_16005 PF05491 RuvB C-terminal winged helix domain XCQ_16005 PF05496 Holliday junction DNA helicase RuvB P-loop domain XCQ_16015 PF02705 K+ potassium transporter XCQ_16020 PF07499 RuvA, C-terminal domain XCQ_16020 PF01330 RuvA N terminal domain XCQ_16025 PF02075 Crossover junction endodeoxyribonuclease RuvC XCQ_16030 PF01709 Transcriptional regulator XCQ_16045 PF02938 GAD domain XCQ_16045 PF00152 tRNA synthetases class II (D, K and N) XCQ_16045 PF01336 OB-fold nucleic acid binding domain XCQ_16060 PF07690 Major Facilitator Superfamily XCQ_16095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_16095 PF03466 LysR substrate binding domain XCQ_16105 PF00005 ABC transporter XCQ_16105 PF12848 ABC transporter XCQ_16110 PF07715 TonB-dependent Receptor Plug Domain XCQ_16110 PF00593 TonB dependent receptor XCQ_16120 PF00593 TonB dependent receptor XCQ_16120 PF07715 TonB-dependent Receptor Plug Domain XCQ_16125 PF07715 TonB-dependent Receptor Plug Domain XCQ_16125 PF00593 TonB dependent receptor XCQ_16130 PF00067 Cytochrome P450 XCQ_16135 PF00999 Sodium/hydrogen exchanger family XCQ_16135 PF02254 TrkA-N domain XCQ_16160 PF07715 TonB-dependent Receptor Plug Domain XCQ_16160 PF07660 Secretin and TonB N terminus short domain XCQ_16160 PF00593 TonB dependent receptor XCQ_16170 PF06276 Ferric iron reductase FhuF-like transporter XCQ_16170 PF04183 IucA / IucC family XCQ_16175 PF07690 Major Facilitator Superfamily XCQ_16180 PF04183 IucA / IucC family XCQ_16180 PF06276 Ferric iron reductase FhuF-like transporter XCQ_16185 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain XCQ_16185 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XCQ_16200 PF02654 Cobalamin-5-phosphate synthase XCQ_16210 PF02277 Phosphoribosyltransferase XCQ_16215 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase XCQ_16220 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XCQ_16220 PF07685 CobB/CobQ-like glutamine amidotransferase domain XCQ_16225 PF00155 Aminotransferase class I and II XCQ_16230 PF17113 Regulatory signalling modulator protein AmpE XCQ_16230 PF03186 CobD/Cbib protein XCQ_16235 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP XCQ_16235 PF12557 Cob(I)alamin adenosyltransferase N terminal XCQ_16250 PF00593 TonB dependent receptor XCQ_16250 PF07715 TonB-dependent Receptor Plug Domain XCQ_16255 PF07724 AAA domain (Cdc48 subfamily) XCQ_16255 PF02861 Clp amino terminal domain, pathogenicity island component XCQ_16255 PF10431 C-terminal, D2-small domain, of ClpB protein XCQ_16255 PF17871 AAA lid domain XCQ_16255 PF00004 ATPase family associated with various cellular activities (AAA) XCQ_16260 PF00005 ABC transporter XCQ_16265 PF00528 Binding-protein-dependent transport system inner membrane component XCQ_16270 PF09084 NMT1/THI5 like XCQ_16275 PF00248 Aldo/keto reductase family XCQ_16280 PF00296 Luciferase-like monooxygenase XCQ_16285 PF07715 TonB-dependent Receptor Plug Domain XCQ_16285 PF00593 TonB dependent receptor XCQ_16290 PF01541 GIY-YIG catalytic domain XCQ_16325 PF00593 TonB dependent receptor XCQ_16325 PF07715 TonB-dependent Receptor Plug Domain XCQ_16330 PF02358 Trehalose-phosphatase XCQ_16335 PF00723 Glycosyl hydrolases family 15 XCQ_16340 PF00982 Glycosyltransferase family 20 XCQ_16345 PF01011 PQQ enzyme repeat XCQ_16350 PF02203 Tar ligand binding domain homologue XCQ_16350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_16350 PF00672 HAMP domain XCQ_16355 PF04134 Protein of unknown function, DUF393 XCQ_16365 PF02578 Multi-copper polyphenol oxidoreductase laccase XCQ_16370 PF00849 RNA pseudouridylate synthase XCQ_16375 PF13525 Outer membrane lipoprotein XCQ_16385 PF00795 Carbon-nitrogen hydrolase XCQ_16385 PF02540 NAD synthase XCQ_16405 PF13406 Transglycosylase SLT domain XCQ_16410 PF01526 Tn3 transposase DDE domain XCQ_16410 PF13700 Domain of unknown function (DUF4158) XCQ_16425 PF01129 NAD:arginine ADP-ribosyltransferase XCQ_16445 PF00549 CoA-ligase XCQ_16445 PF02629 CoA binding domain XCQ_16450 PF08442 ATP-grasp domain XCQ_16450 PF00549 CoA-ligase XCQ_16455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_16455 PF00512 His Kinase A (phospho-acceptor) domain XCQ_16460 PF02954 Bacterial regulatory protein, Fis family XCQ_16460 PF00072 Response regulator receiver domain XCQ_16460 PF00158 Sigma-54 interaction domain XCQ_16465 PF00437 Type II/IV secretion system protein XCQ_16465 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XCQ_16470 PF00437 Type II/IV secretion system protein XCQ_16470 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XCQ_16475 PF00437 Type II/IV secretion system protein XCQ_16475 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XCQ_16480 PF07963 Prokaryotic N-terminal methylation motif XCQ_16480 PF00114 Pilin (bacterial filament) XCQ_16485 PF07963 Prokaryotic N-terminal methylation motif XCQ_16485 PF00114 Pilin (bacterial filament) XCQ_16490 PF00482 Type II secretion system (T2SS), protein F XCQ_16495 PF06750 Bacterial Peptidase A24 N-terminal domain XCQ_16495 PF01478 Type IV leader peptidase family XCQ_16500 PF01121 Dephospho-CoA kinase XCQ_16525 PF00512 His Kinase A (phospho-acceptor) domain XCQ_16525 PF16736 Single Cache-like XCQ_16525 PF00989 PAS fold XCQ_16525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_16530 PF00072 Response regulator receiver domain XCQ_16530 PF00486 Transcriptional regulatory protein, C terminal XCQ_16545 PF00128 Alpha amylase, catalytic domain XCQ_16545 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XCQ_16610 PF04002 RadC-like JAB domain XCQ_16640 PF13426 PAS domain XCQ_16640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_16640 PF00072 Response regulator receiver domain XCQ_16645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_16645 PF13426 PAS domain XCQ_16645 PF00072 Response regulator receiver domain XCQ_16725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_16725 PF08448 PAS fold XCQ_16725 PF13188 PAS domain XCQ_16725 PF00072 Response regulator receiver domain XCQ_16725 PF00512 His Kinase A (phospho-acceptor) domain XCQ_16755 PF13676 TIR domain XCQ_16775 PF00657 GDSL-like Lipase/Acylhydrolase XCQ_16775 PF03797 Autotransporter beta-domain XCQ_16785 PF05690 Thiazole biosynthesis protein ThiG XCQ_16790 PF02390 Putative methyltransferase XCQ_16795 PF02080 TrkA-C domain XCQ_16795 PF03600 Citrate transporter XCQ_16810 PF01557 Fumarylacetoacetate (FAA) hydrolase family XCQ_16815 PF01741 Large-conductance mechanosensitive channel, MscL XCQ_16825 PF00356 Bacterial regulatory proteins, lacI family XCQ_16835 PF00703 Glycosyl hydrolases family 2 XCQ_16835 PF02837 Glycosyl hydrolases family 2, sugar binding domain XCQ_16835 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain XCQ_16840 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation XCQ_16840 PF14508 Glycosyl-hydrolase 97 N-terminal XCQ_16840 PF10566 Glycoside hydrolase 97 XCQ_16850 PF00135 Carboxylesterase family XCQ_16855 PF00588 SpoU rRNA Methylase family XCQ_16855 PF08032 RNA 2'-O ribose methyltransferase substrate binding XCQ_16865 PF01433 Peptidase family M1 domain XCQ_16865 PF11838 ERAP1-like C-terminal domain XCQ_16900 PF00873 AcrB/AcrD/AcrF family XCQ_16905 PF00529 HlyD membrane-fusion protein of T1SS XCQ_16905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCQ_16910 PF00009 Elongation factor Tu GTP binding domain XCQ_16915 PF01507 Phosphoadenosine phosphosulfate reductase family XCQ_16920 PF00175 Oxidoreductase NAD-binding domain XCQ_16920 PF00667 FAD binding domain XCQ_16920 PF00258 Flavodoxin XCQ_16925 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XCQ_16925 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XCQ_16930 PF01507 Phosphoadenosine phosphosulfate reductase family XCQ_16950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_16950 PF00072 Response regulator receiver domain XCQ_16950 PF01627 Hpt domain XCQ_16950 PF00512 His Kinase A (phospho-acceptor) domain XCQ_16960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_16960 PF03466 LysR substrate binding domain XCQ_16965 PF10414 Sirohaem synthase dimerisation region XCQ_16965 PF14824 Sirohaem biosynthesis protein central XCQ_16965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XCQ_16970 PF00291 Pyridoxal-phosphate dependent enzyme XCQ_16980 PF01661 Macro domain XCQ_16985 PF00274 Fructose-bisphosphate aldolase class-I XCQ_16990 PF00224 Pyruvate kinase, barrel domain XCQ_16990 PF02887 Pyruvate kinase, alpha/beta domain XCQ_16995 PF13419 Haloacid dehalogenase-like hydrolase XCQ_17000 PF00162 Phosphoglycerate kinase XCQ_17020 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain XCQ_17020 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XCQ_17030 PF03922 OmpW family XCQ_17035 PF03922 OmpW family XCQ_17045 PF04273 Putative phosphatase (DUF442) XCQ_17045 PF00753 Metallo-beta-lactamase superfamily XCQ_17055 PF00528 Binding-protein-dependent transport system inner membrane component XCQ_17060 PF03459 TOBE domain XCQ_17060 PF00005 ABC transporter XCQ_17095 PF01476 LysM domain XCQ_17095 PF03734 L,D-transpeptidase catalytic domain XCQ_17100 PF01551 Peptidase family M23 XCQ_17100 PF04225 Opacity-associated protein A LysM-like domain XCQ_17110 PF07715 TonB-dependent Receptor Plug Domain XCQ_17110 PF00593 TonB dependent receptor XCQ_17120 PF02779 Transketolase, pyrimidine binding domain XCQ_17120 PF02780 Transketolase, C-terminal domain XCQ_17120 PF00456 Transketolase, thiamine diphosphate binding domain XCQ_17125 PF00375 Sodium:dicarboxylate symporter family XCQ_17135 PF00092 von Willebrand factor type A domain XCQ_17135 PF07584 Aerotolerance regulator N-terminal XCQ_17155 PF07726 ATPase family associated with various cellular activities (AAA) XCQ_17155 PF17863 AAA lid domain XCQ_17165 PF00263 Bacterial type II and III secretion system protein XCQ_17165 PF03958 Bacterial type II/III secretion system short domain XCQ_17165 PF07660 Secretin and TonB N terminus short domain XCQ_17165 PF11741 AMIN domain XCQ_17170 PF04351 Pilus assembly protein, PilP XCQ_17175 PF04350 Pilus assembly protein, PilO XCQ_17180 PF05137 Fimbrial assembly protein (PilN) XCQ_17185 PF11104 Type IV pilus assembly protein PilM; XCQ_17190 PF17092 Penicillin-binding protein OB-like domain XCQ_17190 PF00912 Transglycosylase XCQ_17190 PF00905 Penicillin binding protein transpeptidase domain XCQ_17200 PF00285 Citrate synthase, C-terminal domain XCQ_17205 PF01197 Ribosomal protein L31 XCQ_17210 PF01156 Inosine-uridine preferring nucleoside hydrolase XCQ_17215 PF00271 Helicase conserved C-terminal domain XCQ_17215 PF00270 DEAD/DEAH box helicase XCQ_17215 PF17191 RecG wedge domain XCQ_17220 PF01042 Endoribonuclease L-PSP XCQ_17225 PF13291 ACT domain XCQ_17225 PF02824 TGS domain XCQ_17225 PF04607 Region found in RelA / SpoT proteins XCQ_17230 PF01192 RNA polymerase Rpb6 XCQ_17235 PF00625 Guanylate kinase XCQ_17240 PF03755 YicC-like family, N-terminal region XCQ_17240 PF08340 Domain of unknown function (DUF1732) XCQ_17245 PF03725 3' exoribonuclease family, domain 2 XCQ_17245 PF01138 3' exoribonuclease family, domain 1 XCQ_17255 PF01725 Ham1 family XCQ_17260 PF06969 HemN C-terminal domain XCQ_17260 PF04055 Radical SAM superfamily XCQ_17275 PF00557 Metallopeptidase family M24 XCQ_17285 PF05195 Aminopeptidase P, N-terminal domain XCQ_17285 PF00557 Metallopeptidase family M24 XCQ_17290 PF03695 Uncharacterised protein family (UPF0149) XCQ_17300 PF05164 Cell division protein ZapA XCQ_17310 PF01812 5-formyltetrahydrofolate cyclo-ligase family XCQ_17320 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) XCQ_17330 PF13369 Transglutaminase-like superfamily XCQ_17335 PF00301 Rubredoxin XCQ_17340 PF02581 Thiamine monophosphate synthase XCQ_17350 PF00202 Aminotransferase class-III XCQ_17355 PF00196 Bacterial regulatory proteins, luxR family XCQ_17355 PF17874 MalT-like TPR region XCQ_17360 PF00127 Copper binding proteins, plastocyanin/azurin family XCQ_17365 PF00155 Aminotransferase class I and II XCQ_17375 PF00034 Cytochrome c XCQ_17375 PF13442 Cytochrome C oxidase, cbb3-type, subunit III XCQ_17380 PF01593 Flavin containing amine oxidoreductase XCQ_17395 PF00202 Aminotransferase class-III XCQ_17400 PF00520 Ion transport protein XCQ_17400 PF00027 Cyclic nucleotide-binding domain XCQ_17420 PF01569 PAP2 superfamily XCQ_17425 PF01062 Bestrophin, RFP-TM, chloride channel XCQ_17435 PF01225 Mur ligase family, catalytic domain XCQ_17435 PF02875 Mur ligase family, glutamate ligase domain XCQ_17435 PF08245 Mur ligase middle domain XCQ_17445 PF00365 Phosphofructokinase XCQ_17455 PF03030 Inorganic H+ pyrophosphatase XCQ_17465 PF00719 Inorganic pyrophosphatase XCQ_17475 PF07715 TonB-dependent Receptor Plug Domain XCQ_17475 PF00593 TonB dependent receptor XCQ_17480 PF12833 Helix-turn-helix domain XCQ_17490 PF01964 Radical SAM ThiC family XCQ_17490 PF13667 ThiC-associated domain XCQ_17495 PF00593 TonB dependent receptor XCQ_17495 PF07715 TonB-dependent Receptor Plug Domain XCQ_17500 PF00672 HAMP domain XCQ_17500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_17510 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain XCQ_17510 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain XCQ_17515 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XCQ_17515 PF00205 Thiamine pyrophosphate enzyme, central domain XCQ_17515 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XCQ_17525 PF00291 Pyridoxal-phosphate dependent enzyme XCQ_17530 PF08502 LeuA allosteric (dimerisation) domain XCQ_17530 PF00682 HMGL-like XCQ_17535 PF00180 Isocitrate/isopropylmalate dehydrogenase XCQ_17540 PF00694 Aconitase C-terminal domain XCQ_17545 PF00330 Aconitase family (aconitate hydratase) XCQ_17550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_17555 PF00990 Diguanylate cyclase, GGDEF domain XCQ_17570 PF02321 Outer membrane efflux protein XCQ_17575 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) XCQ_17580 PF03279 Bacterial lipid A biosynthesis acyltransferase XCQ_17605 PF00390 Malic enzyme, N-terminal domain XCQ_17605 PF03949 Malic enzyme, NAD binding domain XCQ_17605 PF01515 Phosphate acetyl/butaryl transferase XCQ_17610 PF00375 Sodium:dicarboxylate symporter family XCQ_17620 PF02743 Cache domain XCQ_17620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_17620 PF00512 His Kinase A (phospho-acceptor) domain XCQ_17625 PF07690 Major Facilitator Superfamily XCQ_17635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_17635 PF03466 LysR substrate binding domain XCQ_17640 PF00248 Aldo/keto reductase family XCQ_17655 PF00196 Bacterial regulatory proteins, luxR family XCQ_17655 PF00072 Response regulator receiver domain XCQ_17665 PF08521 Two-component sensor kinase N-terminal XCQ_17665 PF00512 His Kinase A (phospho-acceptor) domain XCQ_17665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_17670 PF00072 Response regulator receiver domain XCQ_17670 PF00486 Transcriptional regulatory protein, C terminal XCQ_17680 PF03600 Citrate transporter XCQ_17685 PF00106 short chain dehydrogenase XCQ_17690 PF00356 Bacterial regulatory proteins, lacI family XCQ_17705 PF00128 Alpha amylase, catalytic domain XCQ_17720 PF03193 RsgA GTPase XCQ_17725 PF00155 Aminotransferase class I and II XCQ_17740 PF07715 TonB-dependent Receptor Plug Domain XCQ_17740 PF00593 TonB dependent receptor XCQ_17745 PF01522 Polysaccharide deacetylase XCQ_17750 PF00462 Glutaredoxin XCQ_17780 PF02645 Uncharacterised protein, DegV family COG1307 XCQ_17785 PF01327 Polypeptide deformylase XCQ_17790 PF03960 ArsC family XCQ_17805 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) XCQ_17810 PF01270 Glycosyl hydrolases family 8 XCQ_17815 PF03170 Bacterial cellulose synthase subunit XCQ_17820 PF00535 Glycosyl transferase family 2 XCQ_17820 PF07238 PilZ domain XCQ_17820 PF03552 Cellulose synthase XCQ_17835 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain XCQ_17835 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family XCQ_17870 PF07715 TonB-dependent Receptor Plug Domain XCQ_17870 PF00593 TonB dependent receptor XCQ_17880 PF00392 Bacterial regulatory proteins, gntR family XCQ_17880 PF07702 UTRA domain XCQ_17895 PF00263 Bacterial type II and III secretion system protein XCQ_17895 PF03958 Bacterial type II/III secretion system short domain XCQ_17905 PF10741 Type II secretion system (T2SS), protein M subtype b XCQ_17910 PF05137 Fimbrial assembly protein (PilN) XCQ_17915 PF03934 Type II secretion system (T2SS), protein K XCQ_17925 PF07963 Prokaryotic N-terminal methylation motif XCQ_17930 PF12019 Type II transport protein GspH XCQ_17935 PF08334 Type II secretion system (T2SS), protein G XCQ_17940 PF00482 Type II secretion system (T2SS), protein F XCQ_17945 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XCQ_17945 PF00437 Type II/IV secretion system protein XCQ_17950 PF00082 Subtilase family XCQ_17950 PF04151 Bacterial pre-peptidase C-terminal domain XCQ_17955 PF05658 Head domain of trimeric autotransporter adhesin XCQ_17955 PF05662 Coiled stalk of trimeric autotransporter adhesin XCQ_17955 PF03895 YadA-like membrane anchor domain XCQ_17955 PF13018 Extended Signal Peptide of Type V secretion system XCQ_17960 PF00082 Subtilase family XCQ_17960 PF04151 Bacterial pre-peptidase C-terminal domain XCQ_17965 PF03895 YadA-like membrane anchor domain XCQ_17965 PF05662 Coiled stalk of trimeric autotransporter adhesin XCQ_17965 PF05658 Head domain of trimeric autotransporter adhesin XCQ_17965 PF13018 Extended Signal Peptide of Type V secretion system XCQ_17970 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal XCQ_17970 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain XCQ_17970 PF02769 AIR synthase related protein, C-terminal domain XCQ_17975 PF13098 Thioredoxin-like domain XCQ_17975 PF10411 Disulfide bond isomerase protein N-terminus XCQ_17980 PF02899 Phage integrase, N-terminal SAM-like domain XCQ_17980 PF00589 Phage integrase family XCQ_17995 PF03739 Lipopolysaccharide export system permease LptF/LptG XCQ_18005 PF02789 Cytosol aminopeptidase family, N-terminal domain XCQ_18005 PF00883 Cytosol aminopeptidase family, catalytic domain XCQ_18020 PF00133 tRNA synthetases class I (I, L, M and V) XCQ_18020 PF08264 Anticodon-binding domain of tRNA XCQ_18020 PF10458 Valyl tRNA synthetase tRNA binding arm XCQ_18025 PF07715 TonB-dependent Receptor Plug Domain XCQ_18025 PF00593 TonB dependent receptor XCQ_18030 PF01464 Transglycosylase SLT domain XCQ_18030 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain XCQ_18035 PF00544 Pectate lyase XCQ_18055 PF01066 CDP-alcohol phosphatidyltransferase XCQ_18065 PF03129 Anticodon binding domain XCQ_18065 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XCQ_18065 PF04073 Aminoacyl-tRNA editing domain XCQ_18070 PF00816 H-NS histone family XCQ_18080 PF02405 Permease MlaE XCQ_18085 PF00005 ABC transporter XCQ_18090 PF03886 ABC-type transport auxiliary lipoprotein component XCQ_18090 PF02470 MlaD protein XCQ_18110 PF05045 Rhamnan synthesis protein F XCQ_18110 PF14307 Glycosyltransferase WbsX XCQ_18115 PF01144 Coenzyme A transferase XCQ_18120 PF01144 Coenzyme A transferase XCQ_18125 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XCQ_18125 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XCQ_18125 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XCQ_18125 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XCQ_18130 PF01050 Mannose-6-phosphate isomerase XCQ_18130 PF00483 Nucleotidyl transferase XCQ_18135 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XCQ_18135 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XCQ_18135 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XCQ_18140 PF04321 RmlD substrate binding domain XCQ_18145 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase XCQ_18150 PF00483 Nucleotidyl transferase XCQ_18155 PF16363 GDP-mannose 4,6 dehydratase XCQ_18160 PF01012 Electron transfer flavoprotein domain XCQ_18165 PF01012 Electron transfer flavoprotein domain XCQ_18165 PF00766 Electron transfer flavoprotein FAD-binding domain XCQ_18175 PF01040 UbiA prenyltransferase family XCQ_18180 PF01565 FAD binding domain XCQ_18180 PF04030 D-arabinono-1,4-lactone oxidase XCQ_18185 PF00106 short chain dehydrogenase XCQ_18195 PF01370 NAD dependent epimerase/dehydratase family XCQ_18200 PF01593 Flavin containing amine oxidoreductase XCQ_18225 PF00535 Glycosyl transferase family 2 XCQ_18235 PF00005 ABC transporter XCQ_18235 PF14524 Wzt C-terminal domain XCQ_18245 PF01053 Cys/Met metabolism PLP-dependent enzyme XCQ_18250 PF00291 Pyridoxal-phosphate dependent enzyme XCQ_18250 PF00571 CBS domain XCQ_18270 PF00437 Type II/IV secretion system protein XCQ_18275 PF02798 Glutathione S-transferase, N-terminal domain XCQ_18275 PF14497 Glutathione S-transferase, C-terminal domain XCQ_18285 PF00270 DEAD/DEAH box helicase XCQ_18285 PF00271 Helicase conserved C-terminal domain XCQ_18300 PF00593 TonB dependent receptor XCQ_18300 PF07715 TonB-dependent Receptor Plug Domain XCQ_18305 PF01242 6-pyruvoyl tetrahydropterin synthase XCQ_18325 PF13185 GAF domain XCQ_18335 PF00756 Putative esterase XCQ_18340 PF07715 TonB-dependent Receptor Plug Domain XCQ_18340 PF00593 TonB dependent receptor XCQ_18345 PF13419 Haloacid dehalogenase-like hydrolase XCQ_18350 PF11799 impB/mucB/samB family C-terminal domain XCQ_18350 PF00817 impB/mucB/samB family XCQ_18355 PF07977 FabA-like domain XCQ_18360 PF02801 Beta-ketoacyl synthase, C-terminal domain XCQ_18360 PF00109 Beta-ketoacyl synthase, N-terminal domain XCQ_18370 PF01432 Peptidase family M3 XCQ_18385 PF00394 Multicopper oxidase XCQ_18385 PF07731 Multicopper oxidase XCQ_18385 PF07732 Multicopper oxidase XCQ_18390 PF05275 Copper resistance protein B precursor (CopB) XCQ_18395 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XCQ_18425 PF01380 SIS domain XCQ_18430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCQ_18435 PF00005 ABC transporter XCQ_18435 PF02687 FtsX-like permease family XCQ_18435 PF12704 MacB-like periplasmic core domain XCQ_18440 PF12704 MacB-like periplasmic core domain XCQ_18440 PF00005 ABC transporter XCQ_18440 PF02687 FtsX-like permease family XCQ_18445 PF02687 FtsX-like permease family XCQ_18445 PF12704 MacB-like periplasmic core domain XCQ_18460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_18460 PF00512 His Kinase A (phospho-acceptor) domain XCQ_18465 PF00132 Bacterial transferase hexapeptide (six repeats) XCQ_18465 PF14602 Hexapeptide repeat of succinyl-transferase XCQ_18465 PF12804 MobA-like NTP transferase domain XCQ_18480 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain XCQ_18480 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain XCQ_18485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCQ_18485 PF02874 ATP synthase alpha/beta family, beta-barrel domain XCQ_18490 PF00231 ATP synthase XCQ_18495 PF00306 ATP synthase alpha/beta chain, C terminal domain XCQ_18495 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCQ_18495 PF02874 ATP synthase alpha/beta family, beta-barrel domain XCQ_18500 PF00213 ATP synthase delta (OSCP) subunit XCQ_18505 PF00430 ATP synthase B/B' CF(0) XCQ_18510 PF00137 ATP synthase subunit C XCQ_18515 PF00119 ATP synthase A chain XCQ_18535 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCQ_18535 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XCQ_18545 PF02817 e3 binding domain XCQ_18545 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XCQ_18545 PF00364 Biotin-requiring enzyme XCQ_18580 PF03180 NLPA lipoprotein XCQ_18585 PF00528 Binding-protein-dependent transport system inner membrane component XCQ_18590 PF00005 ABC transporter XCQ_18590 PF09383 NIL domain XCQ_18595 PF00892 EamA-like transporter family XCQ_18600 PF04461 Protein of unknown function (DUF520) XCQ_18610 PF18415 Histidine kinase receptor ArcB trans-membrane domain XCQ_18610 PF00989 PAS fold XCQ_18610 PF00072 Response regulator receiver domain XCQ_18610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_18610 PF00512 His Kinase A (phospho-acceptor) domain XCQ_18610 PF01627 Hpt domain XCQ_18630 PF13419 Haloacid dehalogenase-like hydrolase XCQ_18635 PF00849 RNA pseudouridylate synthase XCQ_18635 PF01479 S4 domain XCQ_18640 PF05175 Methyltransferase small domain XCQ_18640 PF08468 Methyltransferase small domain N-terminal XCQ_18650 PF07995 Glucose / Sorbosone dehydrogenase XCQ_18660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_18660 PF00512 His Kinase A (phospho-acceptor) domain XCQ_18660 PF00989 PAS fold XCQ_18680 PF01168 Alanine racemase, N-terminal domain XCQ_18680 PF00842 Alanine racemase, C-terminal domain XCQ_18685 PF01266 FAD dependent oxidoreductase XCQ_18690 PF01037 Lrp/AsnC ligand binding domain XCQ_18700 PF01641 SelR domain XCQ_18710 PF01618 MotA/TolQ/ExbB proton channel family XCQ_18715 PF00691 OmpA family XCQ_18715 PF13677 Membrane MotB of proton-channel complex MotA/MotB XCQ_18740 PF01061 ABC-2 type transporter XCQ_18745 PF00005 ABC transporter XCQ_18750 PF00999 Sodium/hydrogen exchanger family XCQ_18755 PF02469 Fasciclin domain XCQ_18760 PF03167 Uracil DNA glycosylase superfamily XCQ_18770 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XCQ_18780 PF03466 LysR substrate binding domain XCQ_18780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_18785 PF03358 NADPH-dependent FMN reductase XCQ_18790 PF00248 Aldo/keto reductase family XCQ_18820 PF13520 Amino acid permease XCQ_18830 PF04397 LytTr DNA-binding domain XCQ_18830 PF00072 Response regulator receiver domain XCQ_18835 PF02743 Cache domain XCQ_18835 PF00672 HAMP domain XCQ_18835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_18835 PF06580 Histidine kinase XCQ_18850 PF05974 Domain of unknown function (DUF892) XCQ_18855 PF05067 Manganese containing catalase XCQ_18875 PF08448 PAS fold XCQ_18875 PF03705 CheR methyltransferase, all-alpha domain XCQ_18875 PF01739 CheR methyltransferase, SAM binding domain XCQ_18875 PF01339 CheB methylesterase XCQ_18890 PF02954 Bacterial regulatory protein, Fis family XCQ_18890 PF00072 Response regulator receiver domain XCQ_18890 PF00158 Sigma-54 interaction domain XCQ_18900 PF01654 Cytochrome bd terminal oxidase subunit I XCQ_18905 PF02322 Cytochrome bd terminal oxidase subunit II XCQ_18925 PF16363 GDP-mannose 4,6 dehydratase XCQ_18935 PF03275 UDP-galactopyranose mutase XCQ_18945 PF00664 ABC transporter transmembrane region XCQ_18945 PF00005 ABC transporter XCQ_18960 PF08240 Alcohol dehydrogenase GroES-like domain XCQ_18960 PF13823 Alcohol dehydrogenase GroES-associated XCQ_18960 PF00107 Zinc-binding dehydrogenase XCQ_19005 PF00593 TonB dependent receptor XCQ_19005 PF07715 TonB-dependent Receptor Plug Domain XCQ_19025 PF00005 ABC transporter XCQ_19035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_19035 PF03466 LysR substrate binding domain XCQ_19040 PF01042 Endoribonuclease L-PSP XCQ_19065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XCQ_19065 PF00672 HAMP domain XCQ_19080 PF03466 LysR substrate binding domain XCQ_19080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_19085 PF02525 Flavodoxin-like fold XCQ_19125 PF00557 Metallopeptidase family M24 XCQ_19155 PF04546 Sigma-70, non-essential region XCQ_19155 PF03979 Sigma-70 factor, region 1.1 XCQ_19155 PF00140 Sigma-70 factor, region 1.2 XCQ_19155 PF04542 Sigma-70 region 2 XCQ_19155 PF04539 Sigma-70 region 3 XCQ_19155 PF04545 Sigma-70, region 4 XCQ_19160 PF02580 D-Tyr-tRNA(Tyr) deacylase XCQ_19165 PF03279 Bacterial lipid A biosynthesis acyltransferase XCQ_19180 PF00925 GTP cyclohydrolase II XCQ_19200 PF00535 Glycosyl transferase family 2 XCQ_19215 PF01189 16S rRNA methyltransferase RsmB/F XCQ_19215 PF01029 NusB family XCQ_19220 PF02911 Formyl transferase, C-terminal domain XCQ_19220 PF00551 Formyl transferase XCQ_19225 PF01327 Polypeptide deformylase XCQ_19230 PF01476 LysM domain XCQ_19235 PF17782 DprA winged helix domain XCQ_19235 PF02481 DNA recombination-mediator protein A XCQ_19240 PF04361 Protein of unknown function (DUF494) XCQ_19245 PF07963 Prokaryotic N-terminal methylation motif XCQ_19245 PF00114 Pilin (bacterial filament) XCQ_19255 PF01131 DNA topoisomerase XCQ_19255 PF01751 Toprim domain XCQ_19255 PF13368 Topoisomerase C-terminal repeat XCQ_19260 PF01300 Telomere recombination XCQ_19285 PF01343 Peptidase family S49 XCQ_19290 PF01554 MatE XCQ_19310 PF17764 3′ DNA-binding domain (3′BD) XCQ_19310 PF18074 Primosomal protein N C-terminal domain XCQ_19310 PF18319 PriA DNA helicase Cys-rich region (CRR) domain XCQ_19310 PF00271 Helicase conserved C-terminal domain XCQ_19310 PF00270 DEAD/DEAH box helicase XCQ_19315 PF00043 Glutathione S-transferase, C-terminal domain XCQ_19315 PF13417 Glutathione S-transferase, N-terminal domain XCQ_19330 PF07992 Pyridine nucleotide-disulphide oxidoreductase XCQ_19335 PF03458 UPF0126 domain XCQ_19340 PF04542 Sigma-70 region 2 XCQ_19340 PF04545 Sigma-70, region 4 XCQ_19345 PF03167 Uracil DNA glycosylase superfamily XCQ_19350 PF00072 Response regulator receiver domain XCQ_19350 PF01339 CheB methylesterase XCQ_19355 PF18075 FtsX extracellular domain XCQ_19360 PF00005 ABC transporter XCQ_19365 PF00270 DEAD/DEAH box helicase XCQ_19365 PF12300 ATP-dependent RNA helicase RhlB XCQ_19365 PF00271 Helicase conserved C-terminal domain XCQ_19370 PF00085 Thioredoxin XCQ_19375 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XCQ_19375 PF07498 Rho termination factor, N-terminal domain XCQ_19375 PF07497 Rho termination factor, RNA-binding domain XCQ_19380 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) XCQ_19385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_19385 PF03466 LysR substrate binding domain XCQ_19395 PF03971 Monomeric isocitrate dehydrogenase XCQ_19410 PF09704 CRISPR-associated protein (Cas_Cas5) XCQ_19430 PF01867 CRISPR associated protein Cas1 XCQ_19435 PF09827 CRISPR associated protein Cas2 XCQ_19445 PF04972 BON domain XCQ_19445 PF01476 LysM domain XCQ_19450 PF14489 QueF-like protein XCQ_19450 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term XCQ_19455 PF01546 Peptidase family M20/M25/M40 XCQ_19455 PF07687 Peptidase dimerisation domain XCQ_19460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCQ_19465 PF00873 AcrB/AcrD/AcrF family XCQ_19470 PF00873 AcrB/AcrD/AcrF family XCQ_19475 PF07063 Domain of unknown function (DUF1338) XCQ_19515 PF01427 D-ala-D-ala dipeptidase XCQ_19520 PF01510 N-acetylmuramoyl-L-alanine amidase XCQ_19530 PF13378 Enolase C-terminal domain-like XCQ_19530 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XCQ_19540 PF13520 Amino acid permease XCQ_19555 PF05360 yiaA/B two helix domain XCQ_19560 PF07995 Glucose / Sorbosone dehydrogenase XCQ_19565 PF14310 Fibronectin type III-like domain XCQ_19565 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCQ_19565 PF00933 Glycosyl hydrolase family 3 N terminal domain XCQ_19570 PF02152 Dihydroneopterin aldolase XCQ_19575 PF00814 Glycoprotease family XCQ_19580 PF01165 Ribosomal protein S21 XCQ_19585 PF09424 Yqey-like protein XCQ_19590 PF03631 Virulence factor BrkB XCQ_19595 PF10410 DnaB-helicase binding domain of primase XCQ_19595 PF08278 DNA primase DnaG DnaB-binding XCQ_19595 PF01807 CHC2 zinc finger XCQ_19595 PF08275 DNA primase catalytic core, N-terminal domain XCQ_19600 PF13593 SBF-like CPA transporter family (DUF4137) XCQ_19610 PF01040 UbiA prenyltransferase family XCQ_19635 PF00510 Cytochrome c oxidase subunit III XCQ_19640 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 XCQ_19650 PF00115 Cytochrome C and Quinol oxidase polypeptide I XCQ_19655 PF02790 Cytochrome C oxidase subunit II, transmembrane domain XCQ_19655 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XCQ_19665 PF01619 Proline dehydrogenase XCQ_19665 PF00171 Aldehyde dehydrogenase family XCQ_19665 PF14850 DNA-binding domain of Proline dehydrogenase XCQ_19665 PF18327 Proline utilization A proline dehydrogenase N-terminal domain XCQ_19695 PF00579 tRNA synthetases class I (W and Y) XCQ_19700 PF04225 Opacity-associated protein A LysM-like domain XCQ_19700 PF01551 Peptidase family M23 XCQ_19705 PF03702 Anhydro-N-acetylmuramic acid kinase XCQ_19715 PF07690 Major Facilitator Superfamily XCQ_19720 PF03372 Endonuclease/Exonuclease/phosphatase family XCQ_19725 PF00156 Phosphoribosyl transferase domain XCQ_19735 PF13614 AAA domain XCQ_19740 PF02195 ParB-like nuclease domain XCQ_19740 PF17762 HTH domain found in ParB protein XCQ_19750 PF01370 NAD dependent epimerase/dehydratase family XCQ_19755 PF00535 Glycosyl transferase family 2 XCQ_19770 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XCQ_19770 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XCQ_19770 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XCQ_19770 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XCQ_19775 PF00692 dUTPase XCQ_19780 PF04127 DNA / pantothenate metabolism flavoprotein XCQ_19780 PF02441 Flavoprotein XCQ_19785 PF04002 RadC-like JAB domain XCQ_19790 PF03485 Arginyl tRNA synthetase N terminal domain XCQ_19790 PF05746 DALR anticodon binding domain XCQ_19790 PF00750 tRNA synthetases class I (R) XCQ_19805 PF00106 short chain dehydrogenase XCQ_19810 PF01757 Acyltransferase family XCQ_19815 PF03033 Glycosyltransferase family 28 N-terminal domain XCQ_19820 PF00550 Phosphopantetheine attachment site XCQ_19820 PF00975 Thioesterase domain XCQ_19820 PF00501 AMP-binding enzyme XCQ_19820 PF00975 Thioesterase domain XCQ_19820 PF00550 Phosphopantetheine attachment site XCQ_19820 PF00668 Condensation domain XCQ_19820 PF13193 AMP-binding enzyme C-terminal domain XCQ_19820 PF00501 AMP-binding enzyme XCQ_19820 PF00668 Condensation domain XCQ_19820 PF13193 AMP-binding enzyme C-terminal domain XCQ_19825 PF17810 Arginine decarboxylase helical bundle domain XCQ_19825 PF17944 Arginine decarboxylase C-terminal helical extension XCQ_19825 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XCQ_19830 PF17284 Spermidine synthase tetramerisation domain XCQ_19855 PF00543 Nitrogen regulatory protein P-II XCQ_19860 PF04380 Membrane fusogenic activity XCQ_19865 PF13335 Magnesium chelatase, subunit ChlI C-terminal XCQ_19865 PF01078 Magnesium chelatase, subunit ChlI XCQ_19880 PF12792 CSS motif domain associated with EAL XCQ_19880 PF00563 EAL domain XCQ_19885 PF00487 Fatty acid desaturase XCQ_19890 PF00970 Oxidoreductase FAD-binding domain XCQ_19890 PF00111 2Fe-2S iron-sulfur cluster binding domain XCQ_19890 PF00175 Oxidoreductase NAD-binding domain XCQ_19895 PF00440 Bacterial regulatory proteins, tetR family XCQ_19905 PF01139 tRNA-splicing ligase RtcB XCQ_19940 PF08338 Domain of unknown function (DUF1731) XCQ_19940 PF01370 NAD dependent epimerase/dehydratase family XCQ_19945 PF00072 Response regulator receiver domain XCQ_19945 PF00486 Transcriptional regulatory protein, C terminal XCQ_19950 PF00512 His Kinase A (phospho-acceptor) domain XCQ_19950 PF08521 Two-component sensor kinase N-terminal XCQ_19950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_19975 PF00595 PDZ domain XCQ_19995 PF01594 AI-2E family transporter XCQ_20000 PF13419 Haloacid dehalogenase-like hydrolase XCQ_20005 PF00883 Cytosol aminopeptidase family, catalytic domain XCQ_20005 PF02789 Cytosol aminopeptidase family, N-terminal domain XCQ_20015 PF08281 Sigma-70, region 4 XCQ_20015 PF04542 Sigma-70 region 2 XCQ_20020 PF00199 Catalase XCQ_20035 PF00196 Bacterial regulatory proteins, luxR family XCQ_20035 PF00072 Response regulator receiver domain XCQ_20040 PF07730 Histidine kinase XCQ_20045 PF13533 Biotin-lipoyl like XCQ_20050 PF00005 ABC transporter XCQ_20075 PF00892 EamA-like transporter family XCQ_20090 PF00753 Metallo-beta-lactamase superfamily XCQ_20095 PF00579 tRNA synthetases class I (W and Y) XCQ_20100 PF05532 CsbD-like XCQ_20115 PF00491 Arginase family XCQ_20140 PF02223 Thymidylate kinase XCQ_20155 PF03309 Type III pantothenate kinase XCQ_20160 PF02237 Biotin protein ligase C terminal domain XCQ_20160 PF03099 Biotin/lipoate A/B protein ligase family XCQ_20160 PF08279 HTH domain XCQ_20170 PF06167 Glucose-regulated metallo-peptidase M90 XCQ_20185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_20190 PF00072 Response regulator receiver domain XCQ_20190 PF00486 Transcriptional regulatory protein, C terminal XCQ_20200 PF01207 Dihydrouridine synthase (Dus) XCQ_20220 PF06733 DEAD_2 XCQ_20220 PF13307 Helicase C-terminal domain XCQ_20235 PF08501 Shikimate dehydrogenase substrate binding domain XCQ_20235 PF01488 Shikimate / quinate 5-dehydrogenase XCQ_20235 PF18317 Shikimate 5'-dehydrogenase C-terminal domain XCQ_20245 PF00175 Oxidoreductase NAD-binding domain XCQ_20245 PF00258 Flavodoxin XCQ_20245 PF00667 FAD binding domain XCQ_20255 PF03466 LysR substrate binding domain XCQ_20255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_20270 PF00490 Delta-aminolevulinic acid dehydratase XCQ_20295 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XCQ_20295 PF00326 Prolyl oligopeptidase family XCQ_20300 PF02798 Glutathione S-transferase, N-terminal domain XCQ_20300 PF00043 Glutathione S-transferase, C-terminal domain XCQ_20325 PF04820 Tryptophan halogenase XCQ_20340 PF00005 ABC transporter XCQ_20350 PF01381 Helix-turn-helix XCQ_20360 PF01229 Glycosyl hydrolases family 39 XCQ_20365 PF02583 Metal-sensitive transcriptional repressor XCQ_20370 PF01545 Cation efflux family XCQ_20370 PF16916 Dimerisation domain of Zinc Transporter XCQ_20380 PF00593 TonB dependent receptor XCQ_20380 PF07715 TonB-dependent Receptor Plug Domain XCQ_20390 PF01965 DJ-1/PfpI family XCQ_20390 PF12833 Helix-turn-helix domain XCQ_20395 PF00111 2Fe-2S iron-sulfur cluster binding domain XCQ_20395 PF00175 Oxidoreductase NAD-binding domain XCQ_20395 PF00970 Oxidoreductase FAD-binding domain XCQ_20400 PF00005 ABC transporter XCQ_20405 PF01061 ABC-2 type transporter XCQ_20415 PF02558 Ketopantoate reductase PanE/ApbA XCQ_20415 PF08546 Ketopantoate reductase PanE/ApbA C terminal XCQ_20450 PF00268 Ribonucleotide reductase, small chain XCQ_20455 PF03477 ATP cone domain XCQ_20455 PF02867 Ribonucleotide reductase, barrel domain XCQ_20455 PF00317 Ribonucleotide reductase, all-alpha domain XCQ_20465 PF00583 Acetyltransferase (GNAT) family XCQ_20465 PF13380 CoA binding domain XCQ_20465 PF13607 Succinyl-CoA ligase like flavodoxin domain XCQ_20470 PF01769 Divalent cation transporter XCQ_20470 PF03448 MgtE intracellular N domain XCQ_20470 PF00571 CBS domain XCQ_20480 PF00999 Sodium/hydrogen exchanger family XCQ_20480 PF02254 TrkA-N domain XCQ_20485 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XCQ_20485 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XCQ_20490 PF00723 Glycosyl hydrolases family 15 XCQ_20505 PF05166 YcgL domain XCQ_20510 PF00109 Beta-ketoacyl synthase, N-terminal domain XCQ_20510 PF02801 Beta-ketoacyl synthase, C-terminal domain XCQ_20520 PF00535 Glycosyl transferase family 2 XCQ_20585 PF01553 Acyltransferase XCQ_20595 PF00550 Phosphopantetheine attachment site XCQ_20600 PF04820 Tryptophan halogenase XCQ_20620 PF07676 WD40-like Beta Propeller Repeat XCQ_20620 PF00326 Prolyl oligopeptidase family XCQ_20635 PF01218 Coproporphyrinogen III oxidase XCQ_20640 PF00476 DNA polymerase family A XCQ_20640 PF01367 5'-3' exonuclease, C-terminal SAM fold XCQ_20640 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XCQ_20640 PF01612 3'-5' exonuclease XCQ_20650 PF06812 ImpA, N-terminal, type VI secretion system XCQ_20670 PF03793 PASTA domain XCQ_20670 PF00069 Protein kinase domain XCQ_20685 PF14331 ImcF-related N-terminal domain XCQ_20685 PF06761 Intracellular multiplication and human macrophage-killing XCQ_20685 PF06744 Type VI secretion protein IcmF C-terminal XCQ_20695 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE XCQ_20710 PF04717 Type VI secretion system, phage-baseplate injector XCQ_20745 PF04542 Sigma-70 region 2 XCQ_20745 PF08281 Sigma-70, region 4 XCQ_20760 PF00328 Histidine phosphatase superfamily (branch 2) XCQ_20795 PF17871 AAA lid domain XCQ_20795 PF00004 ATPase family associated with various cellular activities (AAA) XCQ_20795 PF07724 AAA domain (Cdc48 subfamily) XCQ_20795 PF10431 C-terminal, D2-small domain, of ClpB protein XCQ_20805 PF05947 Type VI secretion system, TssF XCQ_20810 PF04965 Gene 25-like lysozyme XCQ_20815 PF07024 ImpE protein XCQ_20820 PF05638 Type VI secretion system effector, Hcp XCQ_20825 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath XCQ_20830 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 XCQ_20845 PF14602 Hexapeptide repeat of succinyl-transferase XCQ_20845 PF12464 Maltose acetyltransferase XCQ_20855 PF13361 UvrD-like helicase C-terminal domain XCQ_20855 PF00580 UvrD/REP helicase N-terminal domain XCQ_20865 PF13396 Phospholipase_D-nuclease N-terminal XCQ_20865 PF13091 PLD-like domain XCQ_20870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_20870 PF03466 LysR substrate binding domain XCQ_20875 PF03737 Aldolase/RraA XCQ_20880 PF04303 PrpF protein XCQ_20885 PF04909 Amidohydrolase XCQ_20890 PF00471 Ribosomal protein L33 XCQ_20895 PF00830 Ribosomal L28 family XCQ_20900 PF00873 AcrB/AcrD/AcrF family XCQ_20905 PF13533 Biotin-lipoyl like XCQ_20925 PF02527 rRNA small subunit methyltransferase G XCQ_20930 PF09423 PhoD-like phosphatase XCQ_20930 PF16655 PhoD-like phosphatase, N-terminal domain XCQ_20935 PF16655 PhoD-like phosphatase, N-terminal domain XCQ_20935 PF09423 PhoD-like phosphatase XCQ_20945 PF04226 Transglycosylase associated protein XCQ_20955 PF03372 Endonuclease/Exonuclease/phosphatase family XCQ_20960 PF00480 ROK family XCQ_20970 PF09312 SurA N-terminal domain XCQ_20980 PF00474 Sodium:solute symporter family XCQ_20985 PF04341 Protein of unknown function, DUF485 XCQ_20995 PF00501 AMP-binding enzyme XCQ_20995 PF16177 Acetyl-coenzyme A synthetase N-terminus XCQ_20995 PF13193 AMP-binding enzyme C-terminal domain XCQ_21000 PF00196 Bacterial regulatory proteins, luxR family XCQ_21000 PF00072 Response regulator receiver domain XCQ_21020 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XCQ_21020 PF04616 Glycosyl hydrolases family 43 XCQ_21030 PF00248 Aldo/keto reductase family XCQ_21045 PF01557 Fumarylacetoacetate (FAA) hydrolase family XCQ_21050 PF13378 Enolase C-terminal domain-like XCQ_21050 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XCQ_21055 PF05336 L-rhamnose mutarotase XCQ_21060 PF07690 Major Facilitator Superfamily XCQ_21065 PF09339 IclR helix-turn-helix domain XCQ_21065 PF01614 Bacterial transcriptional regulator XCQ_21070 PF02659 Putative manganese efflux pump XCQ_21075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_21075 PF00512 His Kinase A (phospho-acceptor) domain XCQ_21085 PF06165 Glycosyltransferase family 36 XCQ_21085 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain XCQ_21100 PF01011 PQQ enzyme repeat XCQ_21100 PF13570 PQQ-like domain XCQ_21100 PF13360 PQQ-like domain XCQ_21120 PF04357 TamB, inner membrane protein subunit of TAM complex XCQ_21125 PF01103 Surface antigen XCQ_21125 PF17243 POTRA domain TamA domain 1 XCQ_21145 PF03412 Peptidase C39 family XCQ_21145 PF00664 ABC transporter transmembrane region XCQ_21145 PF00005 ABC transporter XCQ_21150 PF05746 DALR anticodon binding domain XCQ_21150 PF02092 Glycyl-tRNA synthetase beta subunit XCQ_21155 PF02091 Glycyl-tRNA synthetase alpha subunit XCQ_21160 PF00437 Type II/IV secretion system protein XCQ_21160 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XCQ_21170 PF00958 GMP synthase C terminal domain XCQ_21170 PF00117 Glutamine amidotransferase class-I XCQ_21180 PF00902 Sec-independent protein translocase protein (TatC) XCQ_21185 PF02416 mttA/Hcf106 family XCQ_21190 PF02416 mttA/Hcf106 family XCQ_21200 PF00762 Ferrochelatase XCQ_21205 PF12697 Alpha/beta hydrolase family XCQ_21220 PF04381 Putative exonuclease, RdgC XCQ_21225 PF01171 PP-loop family XCQ_21235 PF00356 Bacterial regulatory proteins, lacI family XCQ_21245 PF07477 Glycosyl hydrolase family 67 C-terminus XCQ_21245 PF07488 Glycosyl hydrolase family 67 middle domain XCQ_21245 PF03648 Glycosyl hydrolase family 67 N-terminus XCQ_21255 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XCQ_21255 PF13378 Enolase C-terminal domain-like XCQ_21260 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XCQ_21260 PF04616 Glycosyl hydrolases family 43 XCQ_21265 PF07691 PA14 domain XCQ_21265 PF01915 Glycosyl hydrolase family 3 C-terminal domain XCQ_21265 PF00933 Glycosyl hydrolase family 3 N terminal domain XCQ_21265 PF14310 Fibronectin type III-like domain XCQ_21270 PF08125 Mannitol dehydrogenase C-terminal domain XCQ_21270 PF01232 Mannitol dehydrogenase Rossmann domain XCQ_21300 PF00171 Aldehyde dehydrogenase family XCQ_21325 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XCQ_21325 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XCQ_21345 PF08450 SMP-30/Gluconolactonase/LRE-like region XCQ_21350 PF00331 Glycosyl hydrolase family 10 XCQ_21355 PF00703 Glycosyl hydrolases family 2 XCQ_21355 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XCQ_21355 PF16355 Domain of unknown function (DUF4982) XCQ_21355 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XCQ_21355 PF02837 Glycosyl hydrolases family 2, sugar binding domain XCQ_21360 PF02614 Glucuronate isomerase XCQ_21380 PF00553 Cellulose binding domain XCQ_21380 PF03422 Carbohydrate binding module (family 6) XCQ_21380 PF00331 Glycosyl hydrolase family 10 XCQ_21400 PF04616 Glycosyl hydrolases family 43 XCQ_21465 PF16197 Ketoacyl-synthetase C-terminal extension XCQ_21465 PF00550 Phosphopantetheine attachment site XCQ_21465 PF08659 KR domain XCQ_21465 PF02801 Beta-ketoacyl synthase, C-terminal domain XCQ_21465 PF00109 Beta-ketoacyl synthase, N-terminal domain XCQ_21465 PF00107 Zinc-binding dehydrogenase XCQ_21465 PF08240 Alcohol dehydrogenase GroES-like domain XCQ_21465 PF00698 Acyl transferase domain XCQ_21465 PF14765 Polyketide synthase dehydratase XCQ_21470 PF01553 Acyltransferase XCQ_21480 PF00356 Bacterial regulatory proteins, lacI family XCQ_21495 PF04820 Tryptophan halogenase XCQ_21500 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family XCQ_21505 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) XCQ_21510 PF04337 Protein of unknown function, DUF480 XCQ_21525 PF13361 UvrD-like helicase C-terminal domain XCQ_21525 PF00580 UvrD/REP helicase N-terminal domain XCQ_21530 PF00265 Thymidine kinase XCQ_21535 PF01590 GAF domain XCQ_21535 PF08446 PAS fold XCQ_21535 PF00512 His Kinase A (phospho-acceptor) domain XCQ_21535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XCQ_21535 PF00360 Phytochrome region XCQ_21540 PF04349 Periplasmic glucan biosynthesis protein, MdoG XCQ_21550 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XCQ_21550 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XCQ_21550 PF06827 Zinc finger found in FPG and IleRS XCQ_21580 PF03594 Benzoate membrane transport protein XCQ_21585 PF00360 Phytochrome region XCQ_21585 PF08446 PAS fold XCQ_21585 PF13426 PAS domain XCQ_21585 PF01590 GAF domain XCQ_21590 PF01126 Heme oxygenase XCQ_21595 PF07690 Major Facilitator Superfamily XCQ_21600 PF01263 Aldose 1-epimerase XCQ_21610 PF02810 SEC-C motif XCQ_21615 PF01925 Sulfite exporter TauE/SafE XCQ_21635 PF01227 GTP cyclohydrolase I XCQ_21645 PF07869 Protein of unknown function (DUF1656) XCQ_21650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XCQ_21650 PF00529 HlyD membrane-fusion protein of T1SS XCQ_21655 PF02321 Outer membrane efflux protein XCQ_21660 PF04632 Fusaric acid resistance protein family XCQ_21665 PF00083 Sugar (and other) transporter XCQ_21670 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family XCQ_21675 PF13396 Phospholipase_D-nuclease N-terminal XCQ_21675 PF13091 PLD-like domain XCQ_21700 PF01850 PIN domain XCQ_21735 PF00849 RNA pseudouridylate synthase XCQ_21760 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XCQ_21760 PF00289 Biotin carboxylase, N-terminal domain XCQ_21760 PF02785 Biotin carboxylase C-terminal domain XCQ_21765 PF01425 Amidase XCQ_21800 PF13538 UvrD-like helicase C-terminal domain XCQ_21805 PF00580 UvrD/REP helicase N-terminal domain XCQ_21805 PF13361 UvrD-like helicase C-terminal domain XCQ_21805 PF12705 PD-(D/E)XK nuclease superfamily XCQ_21810 PF17946 RecC C-terminal domain XCQ_21825 PF00005 ABC transporter XCQ_21830 PF02405 Permease MlaE XCQ_21835 PF02470 MlaD protein XCQ_21840 PF05494 MlaC protein XCQ_21850 PF04333 MlaA lipoprotein XCQ_21860 PF00255 Glutathione peroxidase XCQ_21870 PF02646 RmuC family XCQ_21875 PF00107 Zinc-binding dehydrogenase XCQ_21875 PF08240 Alcohol dehydrogenase GroES-like domain XCQ_21880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XCQ_21880 PF03466 LysR substrate binding domain XCQ_21890 PF00043 Glutathione S-transferase, C-terminal domain XCQ_21890 PF13417 Glutathione S-transferase, N-terminal domain XCQ_21900 PF13520 Amino acid permease XCQ_21905 PF17678 Glycosyl hydrolase family 92 N-terminal domain XCQ_21905 PF07971 Glycosyl hydrolase family 92 XCQ_21910 PF10947 Protein of unknown function (DUF2628) XCQ_21915 PF00990 Diguanylate cyclase, GGDEF domain XCQ_21920 PF17853 GGDEF-like domain XCQ_21920 PF05651 Putative sugar diacid recognition XCQ_21920 PF13556 PucR C-terminal helix-turn-helix domain XCQ_21925 PF02595 Glycerate kinase family XCQ_21930 PF07690 Major Facilitator Superfamily XCQ_21945 PF17785 PUA-like domain XCQ_21945 PF10672 S-adenosylmethionine-dependent methyltransferase XCQ_21950 PF03741 Integral membrane protein TerC family XCQ_21955 PF01694 Rhomboid family XCQ_21960 PF03009 Glycerophosphoryl diester phosphodiesterase family XCQ_21970 PF01569 PAP2 superfamily XCQ_21975 PF01926 50S ribosome-binding GTPase XCQ_21975 PF12631 MnmE helical domain XCQ_21975 PF10396 GTP-binding protein TrmE N-terminus XCQ_21980 PF01522 Polysaccharide deacetylase XCQ_21985 PF14849 YidC periplasmic domain XCQ_21985 PF02096 60Kd inner membrane protein XCQ_21990 PF00825 Ribonuclease P XCQ_21995 PF00468 Ribosomal protein L34 XCQ_22005 PF03377 TAL effector repeat XCQ_22030 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system XCQ_22040 PF02796 Helix-turn-helix domain of resolvase XCQ_22040 PF00239 Resolvase, N terminal domain XCQ_22070 PF01526 Tn3 transposase DDE domain XCQ_22070 PF13700 Domain of unknown function (DUF4158) XCQ_22085 PF00239 Resolvase, N terminal domain XCQ_22085 PF02796 Helix-turn-helix domain of resolvase XCQ_22090 PF03377 TAL effector repeat XCQ_22100 PF13614 AAA domain XCQ_22125 PF02796 Helix-turn-helix domain of resolvase XCQ_22125 PF00239 Resolvase, N terminal domain XCQ_22195 PF07015 VirC1 protein XCQ_22250 PF13406 Transglycosylase SLT domain XCQ_22255 PF13700 Domain of unknown function (DUF4158) XCQ_22255 PF01526 Tn3 transposase DDE domain XCQ_22280 PF03377 TAL effector repeat XCQ_22300 PF07015 VirC1 protein XCQ_22360 PF08751 TrwC relaxase XCQ_22360 PF18340 DNA relaxase TraI 2B/2B-like domain XCQ_22360 PF07057 DNA helicase TraI XCQ_22360 PF08751 TrwC relaxase XCQ_22360 PF18340 DNA relaxase TraI 2B/2B-like domain XCQ_22360 PF07057 DNA helicase TraI XCQ_22360 PF18272 single-stranded DNA binding TraI N-terminal subdomain XCQ_22360 PF18272 single-stranded DNA binding TraI N-terminal subdomain XCQ_22385 PF01464 Transglycosylase SLT domain XCQ_22390 PF00437 Type II/IV secretion system protein XCQ_22395 PF03743 Bacterial conjugation TrbI-like protein XCQ_22400 PF03524 Conjugal transfer protein XCQ_22470 PF08535 KorB domain XCQ_22470 PF06613 KorB C-terminal beta-barrel domain XCQ_22470 PF02195 ParB-like nuclease domain XCQ_22475 PF13614 AAA domain XCQ_22500 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin XCQ_22505 PF00239 Resolvase, N terminal domain XCQ_22505 PF02796 Helix-turn-helix domain of resolvase XCQ_22515 PF03377 TAL effector repeat XCQ_22525 PF03695 Uncharacterised protein family (UPF0149) XCQ_22525 PF02810 SEC-C motif XCQ_22530 PF13700 Domain of unknown function (DUF4158) XCQ_22530 PF01526 Tn3 transposase DDE domain XCQ_22545 PF02796 Helix-turn-helix domain of resolvase XCQ_22545 PF00239 Resolvase, N terminal domain