locus-tag class description J171_00013 PF07015 VirC1 protein J171_00017 PF03377 TAL effector repeat J171_00021 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system J171_00023 PF00239 Resolvase, N terminal domain J171_00023 PF02796 Helix-turn-helix domain of resolvase J171_00028 PF13700 Domain of unknown function (DUF4158) J171_00028 PF01526 Tn3 transposase DDE domain J171_00029 PF01526 Tn3 transposase DDE domain J171_00029 PF13700 Domain of unknown function (DUF4158) J171_00032 PF00239 Resolvase, N terminal domain J171_00032 PF02796 Helix-turn-helix domain of resolvase J171_00033 PF03377 TAL effector repeat J171_00041 PF13406 Transglycosylase SLT domain J171_00042 PF13700 Domain of unknown function (DUF4158) J171_00042 PF01526 Tn3 transposase DDE domain J171_00047 PF01527 Transposase J171_00048 PF03377 TAL effector repeat J171_00052 PF07015 VirC1 protein J171_00065 PF08751 TrwC relaxase J171_00065 PF07057 DNA helicase TraI J171_00065 PF18272 single-stranded DNA binding TraI N-terminal subdomain J171_00065 PF18272 single-stranded DNA binding TraI N-terminal subdomain J171_00065 PF07057 DNA helicase TraI J171_00065 PF18340 DNA relaxase TraI 2B/2B-like domain J171_00065 PF08751 TrwC relaxase J171_00065 PF18340 DNA relaxase TraI 2B/2B-like domain J171_00070 PF01464 Transglycosylase SLT domain J171_00071 PF00437 Type II/IV secretion system protein J171_00072 PF03743 Bacterial conjugation TrbI-like protein J171_00073 PF03524 Conjugal transfer protein J171_00085 PF01527 Transposase J171_00088 PF06613 KorB C-terminal beta-barrel domain J171_00088 PF08535 KorB domain J171_00088 PF02195 ParB-like nuclease domain J171_00089 PF13614 AAA domain J171_00094 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin J171_00095 PF00239 Resolvase, N terminal domain J171_00095 PF02796 Helix-turn-helix domain of resolvase J171_00096 PF13333 Integrase core domain J171_00096 PF13276 HTH-like domain J171_00096 PF00665 Integrase core domain J171_00098 PF03377 TAL effector repeat J171_00099 PF13700 Domain of unknown function (DUF4158) J171_00099 PF01526 Tn3 transposase DDE domain J171_00100 PF13700 Domain of unknown function (DUF4158) J171_00100 PF01526 Tn3 transposase DDE domain J171_00103 PF00239 Resolvase, N terminal domain J171_00103 PF02796 Helix-turn-helix domain of resolvase J171_00104 PF00308 Bacterial dnaA protein J171_00104 PF11638 DnaA N-terminal domain J171_00104 PF08299 Bacterial dnaA protein helix-turn-helix J171_00105 PF00712 DNA polymerase III beta subunit, N-terminal domain J171_00105 PF02767 DNA polymerase III beta subunit, central domain J171_00105 PF02768 DNA polymerase III beta subunit, C-terminal domain J171_00106 PF02463 RecF/RecN/SMC N terminal domain J171_00108 PF00986 DNA gyrase B subunit, carboxyl terminus J171_00108 PF00204 DNA gyrase B J171_00108 PF01751 Toprim domain J171_00108 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_00108 PF18053 DNA gyrase B subunit insert domain J171_00110 PF01435 Peptidase family M48 J171_00112 PF03544 Gram-negative bacterial TonB protein C-terminal J171_00113 PF01618 MotA/TolQ/ExbB proton channel family J171_00114 PF02472 Biopolymer transport protein ExbD/TolR J171_00115 PF02472 Biopolymer transport protein ExbD/TolR J171_00116 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ J171_00118 PF13396 Phospholipase_D-nuclease N-terminal J171_00118 PF13091 PLD-like domain J171_00121 PF04055 Radical SAM superfamily J171_00123 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J171_00126 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J171_00126 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J171_00127 PF03572 Peptidase family S41 J171_00127 PF13180 PDZ domain J171_00128 PF01551 Peptidase family M23 J171_00130 PF04389 Peptidase family M28 J171_00132 PF00150 Cellulase (glycosyl hydrolase family 5) J171_00133 PF00150 Cellulase (glycosyl hydrolase family 5) J171_00134 PF00150 Cellulase (glycosyl hydrolase family 5) J171_00135 PF08240 Alcohol dehydrogenase GroES-like domain J171_00135 PF00107 Zinc-binding dehydrogenase J171_00136 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J171_00136 PF07992 Pyridine nucleotide-disulphide oxidoreductase J171_00137 PF01493 GXGXG motif J171_00137 PF01645 Conserved region in glutamate synthase J171_00137 PF00310 Glutamine amidotransferases class-II J171_00137 PF04898 Glutamate synthase central domain J171_00141 PF01804 Penicillin amidase J171_00143 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_00143 PF03466 LysR substrate binding domain J171_00146 PF02397 Bacterial sugar transferase J171_00147 PF02350 UDP-N-acetylglucosamine 2-epimerase J171_00149 PF03808 Glycosyl transferase WecB/TagA/CpsF family J171_00150 PF00534 Glycosyl transferases group 1 J171_00150 PF13439 Glycosyltransferase Family 4 J171_00154 PF00733 Asparagine synthase J171_00154 PF13537 Glutamine amidotransferase domain J171_00157 PF16363 GDP-mannose 4,6 dehydratase J171_00160 PF00664 ABC transporter transmembrane region J171_00160 PF00005 ABC transporter J171_00162 PF00733 Asparagine synthase J171_00162 PF13537 Glutamine amidotransferase domain J171_00167 PF00685 Sulfotransferase domain J171_00184 PF00271 Helicase conserved C-terminal domain J171_00184 PF09369 Domain of unknown function (DUF1998) J171_00184 PF00270 DEAD/DEAH box helicase J171_00185 PF03006 Haemolysin-III related J171_00188 PF00106 short chain dehydrogenase J171_00190 PF03466 LysR substrate binding domain J171_00190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_00194 PF02525 Flavodoxin-like fold J171_00196 PF01527 Transposase J171_00205 PF05532 CsbD-like J171_00209 PF16485 Protealysin propeptide J171_00209 PF02868 Thermolysin metallopeptidase, alpha-helical domain J171_00209 PF01447 Thermolysin metallopeptidase, catalytic domain J171_00211 PF13344 Haloacid dehalogenase-like hydrolase J171_00211 PF00293 NUDIX domain J171_00214 PF00085 Thioredoxin J171_00215 PF00083 Sugar (and other) transporter J171_00215 PF08946 Osmosensory transporter coiled coil J171_00223 PF17863 AAA lid domain J171_00223 PF07726 ATPase family associated with various cellular activities (AAA) J171_00229 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain J171_00230 PF00155 Aminotransferase class I and II J171_00231 PF07715 TonB-dependent Receptor Plug Domain J171_00231 PF00593 TonB dependent receptor J171_00233 PF07883 Cupin domain J171_00234 PF00171 Aldehyde dehydrogenase family J171_00238 PF02735 Ku70/Ku80 beta-barrel domain J171_00239 PF01070 FMN-dependent dehydrogenase J171_00240 PF00144 Beta-lactamase J171_00241 PF07730 Histidine kinase J171_00242 PF00072 Response regulator receiver domain J171_00242 PF00196 Bacterial regulatory proteins, luxR family J171_00246 PF18500 CadC C-terminal domain 1 J171_00246 PF00486 Transcriptional regulatory protein, C terminal J171_00247 PF07055 Enoyl reductase FAD binding domain J171_00247 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J171_00247 PF12241 Trans-2-enoyl-CoA reductase catalytic region J171_00249 PF00294 pfkB family carbohydrate kinase J171_00260 PF01527 Transposase J171_00261 PF00665 Integrase core domain J171_00261 PF13333 Integrase core domain J171_00261 PF13276 HTH-like domain J171_00262 PF00128 Alpha amylase, catalytic domain J171_00262 PF11896 Domain of unknown function (DUF3416) J171_00263 PF16657 Maltogenic Amylase, C-terminal domain J171_00263 PF00128 Alpha amylase, catalytic domain J171_00264 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J171_00264 PF02806 Alpha amylase, C-terminal all-beta domain J171_00264 PF00128 Alpha amylase, catalytic domain J171_00266 PF00248 Aldo/keto reductase family J171_00267 PF00135 Carboxylesterase family J171_00268 PF07859 alpha/beta hydrolase fold J171_00268 PF13472 GDSL-like Lipase/Acylhydrolase family J171_00270 PF03480 Bacterial extracellular solute-binding protein, family 7 J171_00272 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J171_00273 PF04616 Glycosyl hydrolases family 43 J171_00273 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J171_00274 PF00356 Bacterial regulatory proteins, lacI family J171_00275 PF04962 KduI/IolB family J171_00278 PF00657 GDSL-like Lipase/Acylhydrolase J171_00281 PF00351 Biopterin-dependent aromatic amino acid hydroxylase J171_00282 PF01037 Lrp/AsnC ligand binding domain J171_00283 PF07715 TonB-dependent Receptor Plug Domain J171_00283 PF07660 Secretin and TonB N terminus short domain J171_00283 PF00593 TonB dependent receptor J171_00284 PF01734 Patatin-like phospholipase J171_00286 PF00005 ABC transporter J171_00289 PF00005 ABC transporter J171_00290 PF00528 Binding-protein-dependent transport system inner membrane component J171_00292 PF12867 DinB superfamily J171_00292 PF03781 Sulfatase-modifying factor enzyme 1 J171_00295 PF01381 Helix-turn-helix J171_00299 PF10609 NUBPL iron-transfer P-loop NTPase J171_00299 PF01883 Iron-sulfur cluster assembly protein J171_00302 PF13091 PLD-like domain J171_00303 PF03061 Thioesterase superfamily J171_00309 PF08240 Alcohol dehydrogenase GroES-like domain J171_00309 PF00107 Zinc-binding dehydrogenase J171_00311 PF02673 Bacitracin resistance protein BacA J171_00312 PF03951 Glutamine synthetase, beta-Grasp domain J171_00312 PF00120 Glutamine synthetase, catalytic domain J171_00313 PF00543 Nitrogen regulatory protein P-II J171_00314 PF00909 Ammonium Transporter Family J171_00315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_00315 PF00989 PAS fold J171_00315 PF00512 His Kinase A (phospho-acceptor) domain J171_00316 PF00158 Sigma-54 interaction domain J171_00316 PF00072 Response regulator receiver domain J171_00316 PF02954 Bacterial regulatory protein, Fis family J171_00317 PF00080 Copper/zinc superoxide dismutase (SODC) J171_00318 PF00080 Copper/zinc superoxide dismutase (SODC) J171_00319 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J171_00321 PF00108 Thiolase, N-terminal domain J171_00321 PF02803 Thiolase, C-terminal domain J171_00328 PF00581 Rhodanese-like domain J171_00329 PF02556 Preprotein translocase subunit SecB J171_00330 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J171_00330 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J171_00332 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J171_00332 PF00205 Thiamine pyrophosphate enzyme, central domain J171_00332 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J171_00333 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_00334 PF02954 Bacterial regulatory protein, Fis family J171_00334 PF00072 Response regulator receiver domain J171_00334 PF00158 Sigma-54 interaction domain J171_00337 PF07690 Major Facilitator Superfamily J171_00338 PF00588 SpoU rRNA Methylase family J171_00341 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J171_00341 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J171_00342 PF02661 Fic/DOC family J171_00342 PF13784 Fic/DOC family N-terminal J171_00343 PF00561 alpha/beta hydrolase fold J171_00344 PF03692 Putative zinc- or iron-chelating domain J171_00345 PF00501 AMP-binding enzyme J171_00347 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family J171_00349 PF07478 D-ala D-ala ligase C-terminus J171_00349 PF01820 D-ala D-ala ligase N-terminus J171_00351 PF03109 ABC1 family J171_00353 PF00849 RNA pseudouridylate synthase J171_00355 PF00472 RF-1 domain J171_00357 PF01112 Asparaginase J171_00358 PF01432 Peptidase family M3 J171_00359 PF12706 Beta-lactamase superfamily domain J171_00362 PF12833 Helix-turn-helix domain J171_00363 PF00999 Sodium/hydrogen exchanger family J171_00364 PF03466 LysR substrate binding domain J171_00364 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_00365 PF01274 Malate synthase J171_00366 PF00463 Isocitrate lyase family J171_00367 PF00990 Diguanylate cyclase, GGDEF domain J171_00372 PF00326 Prolyl oligopeptidase family J171_00373 PF00289 Biotin carboxylase, N-terminal domain J171_00373 PF00364 Biotin-requiring enzyme J171_00373 PF02785 Biotin carboxylase C-terminal domain J171_00373 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J171_00374 PF01039 Carboxyl transferase domain J171_00375 PF02770 Acyl-CoA dehydrogenase, middle domain J171_00375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J171_00375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J171_00386 PF07683 Cobalamin synthesis protein cobW C-terminal domain J171_00386 PF02492 CobW/HypB/UreG, nucleotide-binding domain J171_00390 PF03969 AFG1-like ATPase J171_00391 PF01047 MarR family J171_00392 PF02566 OsmC-like protein J171_00397 PF16884 N-terminal domain of oxidoreductase J171_00397 PF00107 Zinc-binding dehydrogenase J171_00400 PF00849 RNA pseudouridylate synthase J171_00401 PF00593 TonB dependent receptor J171_00403 PF00271 Helicase conserved C-terminal domain J171_00403 PF08482 ATP-dependent helicase C-terminal J171_00403 PF04408 Helicase associated domain (HA2) J171_00403 PF00270 DEAD/DEAH box helicase J171_00404 PF07308 Protein of unknown function (DUF1456) J171_00405 PF00576 HIUase/Transthyretin family J171_00406 PF13454 FAD-NAD(P)-binding J171_00407 PF09349 OHCU decarboxylase J171_00407 PF01014 Uricase J171_00410 PF00266 Aminotransferase class-V J171_00411 PF07687 Peptidase dimerisation domain J171_00411 PF01546 Peptidase family M20/M25/M40 J171_00412 PF03466 LysR substrate binding domain J171_00412 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_00413 PF07690 Major Facilitator Superfamily J171_00416 PF01425 Amidase J171_00417 PF01156 Inosine-uridine preferring nucleoside hydrolase J171_00419 PF00860 Permease family J171_00420 PF00111 2Fe-2S iron-sulfur cluster binding domain J171_00421 PF00355 Rieske [2Fe-2S] domain J171_00422 PF03466 LysR substrate binding domain J171_00422 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_00423 PF01026 TatD related DNase J171_00426 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_00426 PF03466 LysR substrate binding domain J171_00427 PF07690 Major Facilitator Superfamily J171_00430 PF02146 Sir2 family J171_00431 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J171_00432 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J171_00432 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J171_00434 PF00551 Formyl transferase J171_00435 PF00486 Transcriptional regulatory protein, C terminal J171_00435 PF00072 Response regulator receiver domain J171_00436 PF00672 HAMP domain J171_00436 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_00436 PF00512 His Kinase A (phospho-acceptor) domain J171_00437 PF00529 HlyD membrane-fusion protein of T1SS J171_00437 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J171_00438 PF00873 AcrB/AcrD/AcrF family J171_00439 PF02321 Outer membrane efflux protein J171_00441 PF02219 Methylenetetrahydrofolate reductase J171_00442 PF02677 Epoxyqueuosine reductase QueH J171_00443 PF03466 LysR substrate binding domain J171_00443 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_00444 PF03358 NADPH-dependent FMN reductase J171_00446 PF08267 Cobalamin-independent synthase, N-terminal domain J171_00446 PF01717 Cobalamin-independent synthase, Catalytic domain J171_00447 PF03812 2-keto-3-deoxygluconate permease J171_00449 PF05368 NmrA-like family J171_00450 PF01638 HxlR-like helix-turn-helix J171_00454 PF13333 Integrase core domain J171_00454 PF13276 HTH-like domain J171_00454 PF00665 Integrase core domain J171_00455 PF01527 Transposase J171_00456 PF00589 Phage integrase family J171_00456 PF13495 Phage integrase, N-terminal SAM-like domain J171_00457 PF00920 Dehydratase family J171_00460 PF00132 Bacterial transferase hexapeptide (six repeats) J171_00461 PF07690 Major Facilitator Superfamily J171_00462 PF11871 Domain of unknown function (DUF3391) J171_00462 PF01966 HD domain J171_00466 PF00171 Aldehyde dehydrogenase family J171_00468 PF01494 FAD binding domain J171_00471 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J171_00471 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J171_00472 PF00230 Major intrinsic protein J171_00473 PF16901 C-terminal domain of alpha-glycerophosphate oxidase J171_00473 PF01266 FAD dependent oxidoreductase J171_00474 PF08220 DeoR-like helix-turn-helix domain J171_00474 PF00455 DeoR C terminal sensor domain J171_00476 PF00355 Rieske [2Fe-2S] domain J171_00477 PF01144 Coenzyme A transferase J171_00478 PF01144 Coenzyme A transferase J171_00479 PF02803 Thiolase, C-terminal domain J171_00479 PF00108 Thiolase, N-terminal domain J171_00480 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal J171_00480 PF00775 Dioxygenase J171_00482 PF10397 Adenylosuccinate lyase C-terminus J171_00482 PF00206 Lyase J171_00483 PF12146 Serine aminopeptidase, S33 J171_00484 PF02627 Carboxymuconolactone decarboxylase family J171_00486 PF01614 Bacterial transcriptional regulator J171_00486 PF09339 IclR helix-turn-helix domain J171_00488 PF07859 alpha/beta hydrolase fold J171_00489 PF10677 Protein of unknown function (DUF2490) J171_00490 PF01134 Glucose inhibited division protein A J171_00490 PF13932 GidA associated domain J171_00492 PF00291 Pyridoxal-phosphate dependent enzyme J171_00496 PF13649 Methyltransferase domain J171_00498 PF12697 Alpha/beta hydrolase family J171_00500 PF00155 Aminotransferase class I and II J171_00501 PF04055 Radical SAM superfamily J171_00501 PF06968 Biotin and Thiamin Synthesis associated domain J171_00503 PF01040 UbiA prenyltransferase family J171_00507 PF05819 NolX protein J171_00515 PF01313 Bacterial export proteins, family 3 J171_00516 PF00813 FliP family J171_00519 PF00771 FHIPEP family J171_00520 PF01312 FlhB HrpN YscU SpaS Family J171_00523 PF01514 Secretory protein of YscJ/FliF family J171_00526 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J171_00526 PF18269 T3SS EscN ATPase C-terminal domain J171_00526 PF02874 ATP synthase alpha/beta family, beta-barrel domain J171_00528 PF01311 Bacterial export proteins, family 1 J171_00531 PF01464 Transglycosylase SLT domain J171_00534 PF12794 Mechanosensitive ion channel inner membrane domain 1 J171_00534 PF00924 Mechanosensitive ion channel J171_00534 PF12795 Mechanosensitive ion channel porin domain J171_00535 PF00884 Sulfatase J171_00536 PF03109 ABC1 family J171_00537 PF05661 Protein of unknown function (DUF808) J171_00538 PF00990 Diguanylate cyclase, GGDEF domain J171_00538 PF00072 Response regulator receiver domain J171_00539 PF08323 Starch synthase catalytic domain J171_00539 PF00534 Glycosyl transferases group 1 J171_00540 PF02806 Alpha amylase, C-terminal all-beta domain J171_00540 PF00128 Alpha amylase, catalytic domain J171_00540 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J171_00541 PF11941 Domain of unknown function (DUF3459) J171_00541 PF00128 Alpha amylase, catalytic domain J171_00541 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J171_00542 PF02446 4-alpha-glucanotransferase J171_00543 PF00128 Alpha amylase, catalytic domain J171_00545 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J171_00545 PF00128 Alpha amylase, catalytic domain J171_00546 PF13460 NAD(P)H-binding J171_00549 PF06903 VirK protein J171_00550 PF02321 Outer membrane efflux protein J171_00553 PF00873 AcrB/AcrD/AcrF family J171_00557 PF00271 Helicase conserved C-terminal domain J171_00557 PF00270 DEAD/DEAH box helicase J171_00559 PF00364 Biotin-requiring enzyme J171_00559 PF02817 e3 binding domain J171_00559 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J171_00561 PF02780 Transketolase, C-terminal domain J171_00561 PF02779 Transketolase, pyrimidine binding domain J171_00562 PF00676 Dehydrogenase E1 component J171_00564 PF03301 Tryptophan 2,3-dioxygenase J171_00565 PF00854 POT family J171_00567 PF01047 MarR family J171_00568 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J171_00569 PF04209 homogentisate 1,2-dioxygenase J171_00572 PF03334 Na+/H+ antiporter subunit J171_00573 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) J171_00575 PF00361 Proton-conducting membrane transporter J171_00576 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J171_00577 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J171_00577 PF13244 Domain of unknown function (DUF4040) J171_00577 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J171_00577 PF00361 Proton-conducting membrane transporter J171_00580 PF07504 Fungalysin/Thermolysin Propeptide Motif J171_00580 PF01483 Proprotein convertase P-domain J171_00580 PF02868 Thermolysin metallopeptidase, alpha-helical domain J171_00580 PF01447 Thermolysin metallopeptidase, catalytic domain J171_00581 PF00182 Chitinase class I J171_00585 PF01259 SAICAR synthetase J171_00586 PF00226 DnaJ domain J171_00586 PF05099 Tellurite resistance protein TerB J171_00588 PF00834 Ribulose-phosphate 3 epimerase family J171_00589 PF00583 Acetyltransferase (GNAT) family J171_00590 PF00781 Diacylglycerol kinase catalytic domain J171_00591 PF00425 chorismate binding enzyme J171_00591 PF04715 Anthranilate synthase component I, N terminal region J171_00593 PF00117 Glutamine amidotransferase class-I J171_00595 PF02885 Glycosyl transferase family, helical bundle domain J171_00595 PF00591 Glycosyl transferase family, a/b domain J171_00596 PF00218 Indole-3-glycerol phosphate synthase J171_00598 PF00325 Bacterial regulatory proteins, crp family J171_00598 PF00027 Cyclic nucleotide-binding domain J171_00599 PF02675 S-adenosylmethionine decarboxylase J171_00600 PF00893 Small Multidrug Resistance protein J171_00601 PF03232 Ubiquinone biosynthesis protein COQ7 J171_00602 PF00572 Ribosomal protein L13 J171_00603 PF00380 Ribosomal protein S9/S16 J171_00606 PF00293 NUDIX domain J171_00607 PF00210 Ferritin-like domain J171_00608 PF00672 HAMP domain J171_00608 PF00512 His Kinase A (phospho-acceptor) domain J171_00608 PF00072 Response regulator receiver domain J171_00608 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_00608 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J171_00608 PF01627 Hpt domain J171_00609 PF00072 Response regulator receiver domain J171_00609 PF00486 Transcriptional regulatory protein, C terminal J171_00613 PF01521 Iron-sulphur cluster biosynthesis J171_00616 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain J171_00616 PF00293 NUDIX domain J171_00616 PF09297 NADH pyrophosphatase zinc ribbon domain J171_00617 PF03186 CobD/Cbib protein J171_00617 PF17113 Regulatory signalling modulator protein AmpE J171_00620 PF07690 Major Facilitator Superfamily J171_00621 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_00621 PF03466 LysR substrate binding domain J171_00622 PF07690 Major Facilitator Superfamily J171_00623 PF12805 FUSC-like inner membrane protein yccS J171_00624 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J171_00624 PF02843 Phosphoribosylglycinamide synthetase, C domain J171_00624 PF02844 Phosphoribosylglycinamide synthetase, N domain J171_00626 PF01808 AICARFT/IMPCHase bienzyme J171_00626 PF02142 MGS-like domain J171_00627 PF01066 CDP-alcohol phosphatidyltransferase J171_00628 PF12147 Putative methyltransferase J171_00628 PF12146 Serine aminopeptidase, S33 J171_00629 PF00782 Dual specificity phosphatase, catalytic domain J171_00635 PF02954 Bacterial regulatory protein, Fis family J171_00638 PF01381 Helix-turn-helix J171_00643 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J171_00643 PF00289 Biotin carboxylase, N-terminal domain J171_00643 PF02785 Biotin carboxylase C-terminal domain J171_00645 PF00364 Biotin-requiring enzyme J171_00646 PF01220 Dehydroquinase class II J171_00647 PF11412 Disulphide bond corrector protein DsbC J171_00647 PF02683 Cytochrome C biogenesis protein transmembrane region J171_00648 PF03091 CutA1 divalent ion tolerance protein J171_00651 PF01852 START domain J171_00653 PF00106 short chain dehydrogenase J171_00654 PF04231 Endonuclease I J171_00655 PF00166 Chaperonin 10 Kd subunit J171_00656 PF00118 TCP-1/cpn60 chaperonin family J171_00658 PF07715 TonB-dependent Receptor Plug Domain J171_00658 PF00593 TonB dependent receptor J171_00659 PF00793 DAHP synthetase I family J171_00662 PF08450 SMP-30/Gluconolactonase/LRE-like region J171_00664 PF08335 GlnD PII-uridylyltransferase J171_00664 PF03710 Glutamate-ammonia ligase adenylyltransferase J171_00665 PF02592 Putative vitamin uptake transporter J171_00668 PF00881 Nitroreductase family J171_00669 PF04264 YceI-like domain J171_00673 PF16957 Malonate decarboxylase, alpha subunit, transporter J171_00674 PF06857 Malonate decarboxylase delta subunit (MdcD) J171_00675 PF01039 Carboxyl transferase domain J171_00677 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG J171_00678 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase J171_00680 PF00698 Acyl transferase domain J171_00682 PF00392 Bacterial regulatory proteins, gntR family J171_00682 PF07729 FCD domain J171_00683 PF13419 Haloacid dehalogenase-like hydrolase J171_00689 PF07745 Glycosyl hydrolase family 53 J171_00690 PF00456 Transketolase, thiamine diphosphate binding domain J171_00690 PF17831 Pyruvate dehydrogenase E1 component middle domain J171_00691 PF13333 Integrase core domain J171_00691 PF00665 Integrase core domain J171_00691 PF13276 HTH-like domain J171_00692 PF01527 Transposase J171_00693 PF00106 short chain dehydrogenase J171_00696 PF00106 short chain dehydrogenase J171_00698 PF13409 Glutathione S-transferase, N-terminal domain J171_00703 PF12823 Domain of unknown function (DUF3817) J171_00703 PF03176 MMPL family J171_00704 PF00326 Prolyl oligopeptidase family J171_00704 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J171_00705 PF07759 Protein of unknown function (DUF1615) J171_00706 PF05230 MASE2 domain J171_00706 PF00990 Diguanylate cyclase, GGDEF domain J171_00710 PF00892 EamA-like transporter family J171_00711 PF00497 Bacterial extracellular solute-binding proteins, family 3 J171_00714 PF00324 Amino acid permease J171_00716 PF01544 CorA-like Mg2+ transporter protein J171_00718 PF01204 Trehalase J171_00720 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J171_00720 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J171_00725 PF08447 PAS fold J171_00725 PF08448 PAS fold J171_00725 PF00990 Diguanylate cyclase, GGDEF domain J171_00725 PF00563 EAL domain J171_00726 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_00726 PF02203 Tar ligand binding domain homologue J171_00726 PF00672 HAMP domain J171_00727 PF00553 Cellulose binding domain J171_00727 PF00150 Cellulase (glycosyl hydrolase family 5) J171_00728 PF00916 Sulfate permease family J171_00728 PF01740 STAS domain J171_00729 PF00990 Diguanylate cyclase, GGDEF domain J171_00729 PF08448 PAS fold J171_00732 PF13632 Glycosyl transferase family group 2 J171_00734 PF06580 Histidine kinase J171_00734 PF07694 5TMR of 5TMR-LYT J171_00735 PF00072 Response regulator receiver domain J171_00735 PF04397 LytTr DNA-binding domain J171_00736 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J171_00736 PF03900 Porphobilinogen deaminase, C-terminal domain J171_00741 PF00326 Prolyl oligopeptidase family J171_00741 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J171_00743 PF00155 Aminotransferase class I and II J171_00744 PF00326 Prolyl oligopeptidase family J171_00744 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J171_00745 PF04304 Protein of unknown function (DUF454) J171_00747 PF01678 Diaminopimelate epimerase J171_00749 PF02899 Phage integrase, N-terminal SAM-like domain J171_00749 PF00589 Phage integrase family J171_00750 PF00227 Proteasome subunit J171_00751 PF07724 AAA domain (Cdc48 subfamily) J171_00751 PF00004 ATPase family associated with various cellular activities (AAA) J171_00751 PF10431 C-terminal, D2-small domain, of ClpB protein J171_00753 PF13673 Acetyltransferase (GNAT) domain J171_00754 PF13533 Biotin-lipoyl like J171_00756 PF01209 ubiE/COQ5 methyltransferase family J171_00757 PF00990 Diguanylate cyclase, GGDEF domain J171_00757 PF03707 Bacterial signalling protein N terminal repeat J171_00757 PF00563 EAL domain J171_00758 PF11838 ERAP1-like C-terminal domain J171_00758 PF01433 Peptidase family M1 domain J171_00761 PF13360 PQQ-like domain J171_00762 PF00497 Bacterial extracellular solute-binding proteins, family 3 J171_00765 PF08240 Alcohol dehydrogenase GroES-like domain J171_00765 PF00107 Zinc-binding dehydrogenase J171_00767 PF00158 Sigma-54 interaction domain J171_00767 PF02954 Bacterial regulatory protein, Fis family J171_00767 PF01590 GAF domain J171_00768 PF00294 pfkB family carbohydrate kinase J171_00770 PF04085 rod shape-determining protein MreC J171_00772 PF03717 Penicillin-binding Protein dimerisation domain J171_00772 PF00905 Penicillin binding protein transpeptidase domain J171_00773 PF01098 Cell cycle protein J171_00774 PF00295 Glycosyl hydrolases family 28 J171_00775 PF13406 Transglycosylase SLT domain J171_00776 PF05036 Sporulation related domain J171_00776 PF03330 Lytic transglycolase J171_00777 PF00768 D-alanyl-D-alanine carboxypeptidase J171_00777 PF07943 Penicillin-binding protein 5, C-terminal domain J171_00779 PF04359 Protein of unknown function (DUF493) J171_00780 PF03099 Biotin/lipoate A/B protein ligase family J171_00781 PF04055 Radical SAM superfamily J171_00781 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family J171_00782 PF03572 Peptidase family S41 J171_00782 PF11818 C-terminal domain of tail specific protease (DUF3340) J171_00782 PF00595 PDZ domain J171_00782 PF17804 Tail specific protease N-terminal domain J171_00784 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_00784 PF03466 LysR substrate binding domain J171_00786 PF00293 NUDIX domain J171_00786 PF01467 Cytidylyltransferase-like J171_00793 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J171_00793 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J171_00794 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J171_00794 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J171_00795 PF04972 BON domain J171_00796 PF01590 GAF domain J171_00796 PF08446 PAS fold J171_00796 PF00512 His Kinase A (phospho-acceptor) domain J171_00796 PF00360 Phytochrome region J171_00796 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_00797 PF00072 Response regulator receiver domain J171_00798 PF00512 His Kinase A (phospho-acceptor) domain J171_00798 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_00799 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J171_00808 PF00263 Bacterial type II and III secretion system protein J171_00808 PF03958 Bacterial type II/III secretion system short domain J171_00809 PF00437 Type II/IV secretion system protein J171_00810 PF00482 Type II secretion system (T2SS), protein F J171_00811 PF08334 Type II secretion system (T2SS), protein G J171_00811 PF07963 Prokaryotic N-terminal methylation motif J171_00812 PF07963 Prokaryotic N-terminal methylation motif J171_00812 PF12019 Type II transport protein GspH J171_00814 PF11612 Type II secretion system (T2SS), protein J J171_00814 PF07963 Prokaryotic N-terminal methylation motif J171_00815 PF03934 Type II secretion system (T2SS), protein K J171_00821 PF02837 Glycosyl hydrolases family 2, sugar binding domain J171_00821 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J171_00821 PF00703 Glycosyl hydrolases family 2 J171_00821 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J171_00821 PF16355 Domain of unknown function (DUF4982) J171_00826 PF07690 Major Facilitator Superfamily J171_00827 PF00356 Bacterial regulatory proteins, lacI family J171_00828 PF01380 SIS domain J171_00829 PF01979 Amidohydrolase family J171_00831 PF01966 HD domain J171_00831 PF01743 Poly A polymerase head domain J171_00831 PF12627 Probable RNA and SrmB- binding site of polymerase A J171_00832 PF05199 GMC oxidoreductase J171_00832 PF00732 GMC oxidoreductase J171_00833 PF00171 Aldehyde dehydrogenase family J171_00834 PF02028 BCCT, betaine/carnitine/choline family transporter J171_00836 PF01323 DSBA-like thioredoxin domain J171_00839 PF00034 Cytochrome c J171_00840 PF01926 50S ribosome-binding GTPase J171_00841 PF10996 Beta-Casp domain J171_00841 PF00753 Metallo-beta-lactamase superfamily J171_00841 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain J171_00843 PF04107 Glutamate-cysteine ligase family 2(GCS2) J171_00844 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_00844 PF00512 His Kinase A (phospho-acceptor) domain J171_00844 PF00672 HAMP domain J171_00845 PF00072 Response regulator receiver domain J171_00845 PF00486 Transcriptional regulatory protein, C terminal J171_00848 PF02583 Metal-sensitive transcriptional repressor J171_00849 PF08240 Alcohol dehydrogenase GroES-like domain J171_00849 PF00107 Zinc-binding dehydrogenase J171_00850 PF04828 Glutathione-dependent formaldehyde-activating enzyme J171_00851 PF00756 Putative esterase J171_00852 PF00155 Aminotransferase class I and II J171_00852 PF00392 Bacterial regulatory proteins, gntR family J171_00853 PF02567 Phenazine biosynthesis-like protein J171_00854 PF00892 EamA-like transporter family J171_00856 PF12848 ABC transporter J171_00856 PF00005 ABC transporter J171_00858 PF00464 Serine hydroxymethyltransferase J171_00859 PF03477 ATP cone domain J171_00861 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J171_00861 PF01872 RibD C-terminal domain J171_00864 PF00677 Lumazine binding domain J171_00865 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J171_00865 PF00925 GTP cyclohydrolase II J171_00866 PF00885 6,7-dimethyl-8-ribityllumazine synthase J171_00867 PF01029 NusB family J171_00868 PF00586 AIR synthase related protein, N-terminal domain J171_00868 PF02769 AIR synthase related protein, C-terminal domain J171_00872 PF03814 Potassium-transporting ATPase A subunit J171_00874 PF02669 K+-transporting ATPase, c chain J171_00875 PF00512 His Kinase A (phospho-acceptor) domain J171_00875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_00875 PF13492 GAF domain J171_00875 PF13493 Domain of unknown function (DUF4118) J171_00875 PF02702 Osmosensitive K+ channel His kinase sensor domain J171_00876 PF00486 Transcriptional regulatory protein, C terminal J171_00876 PF00072 Response regulator receiver domain J171_00879 PF02913 FAD linked oxidases, C-terminal domain J171_00879 PF01565 FAD binding domain J171_00880 PF04307 LexA-binding, inner membrane-associated putative hydrolase J171_00881 PF02021 Uncharacterised protein family UPF0102 J171_00883 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J171_00888 PF02381 MraZ protein, putative antitoxin-like J171_00889 PF01795 MraW methylase family J171_00890 PF04999 Cell division protein FtsL J171_00891 PF00905 Penicillin binding protein transpeptidase domain J171_00891 PF03717 Penicillin-binding Protein dimerisation domain J171_00892 PF01225 Mur ligase family, catalytic domain J171_00892 PF02875 Mur ligase family, glutamate ligase domain J171_00892 PF08245 Mur ligase middle domain J171_00893 PF01225 Mur ligase family, catalytic domain J171_00893 PF02875 Mur ligase family, glutamate ligase domain J171_00893 PF08245 Mur ligase middle domain J171_00894 PF00953 Glycosyl transferase family 4 J171_00895 PF01098 Cell cycle protein J171_00896 PF03033 Glycosyltransferase family 28 N-terminal domain J171_00896 PF04101 Glycosyltransferase family 28 C-terminal domain J171_00897 PF01225 Mur ligase family, catalytic domain J171_00897 PF02875 Mur ligase family, glutamate ligase domain J171_00897 PF08245 Mur ligase middle domain J171_00898 PF01820 D-ala D-ala ligase N-terminus J171_00898 PF07478 D-ala D-ala ligase C-terminus J171_00899 PF03799 Cell division protein FtsQ J171_00899 PF08478 POTRA domain, FtsQ-type J171_00900 PF02491 SHS2 domain inserted in FTSA J171_00901 PF00091 Tubulin/FtsZ family, GTPase domain J171_00901 PF12327 FtsZ family, C-terminal domain J171_00902 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase J171_00904 PF01551 Peptidase family M23 J171_00904 PF01476 LysM domain J171_00904 PF08525 Opacity-associated protein A N-terminal motif J171_00905 PF01043 SecA preprotein cross-linking domain J171_00905 PF02810 SEC-C motif J171_00905 PF07517 SecA DEAD-like domain J171_00905 PF07516 SecA Wing and Scaffold domain J171_00906 PF00293 NUDIX domain J171_00908 PF02219 Methylenetetrahydrofolate reductase J171_00911 PF00109 Beta-ketoacyl synthase, N-terminal domain J171_00911 PF00698 Acyl transferase domain J171_00911 PF00550 Phosphopantetheine attachment site J171_00911 PF08659 KR domain J171_00911 PF14765 Polyketide synthase dehydratase J171_00911 PF16197 Ketoacyl-synthetase C-terminal extension J171_00911 PF08240 Alcohol dehydrogenase GroES-like domain J171_00911 PF02801 Beta-ketoacyl synthase, C-terminal domain J171_00911 PF00107 Zinc-binding dehydrogenase J171_00912 PF09286 Pro-kumamolisin, activation domain J171_00912 PF00082 Subtilase family J171_00914 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J171_00915 PF00128 Alpha amylase, catalytic domain J171_00921 PF13649 Methyltransferase domain J171_00922 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain J171_00922 PF05221 S-adenosyl-L-homocysteine hydrolase J171_00925 PF00311 Phosphoenolpyruvate carboxylase J171_00930 PF00328 Histidine phosphatase superfamily (branch 2) J171_00931 PF02772 S-adenosylmethionine synthetase, central domain J171_00931 PF02773 S-adenosylmethionine synthetase, C-terminal domain J171_00931 PF00438 S-adenosylmethionine synthetase, N-terminal domain J171_00933 PF13649 Methyltransferase domain J171_00934 PF01207 Dihydrouridine synthase (Dus) J171_00937 PF00294 pfkB family carbohydrate kinase J171_00938 PF01773 Na+ dependent nucleoside transporter N-terminus J171_00938 PF07670 Nucleoside recognition J171_00938 PF07662 Na+ dependent nucleoside transporter C-terminus J171_00939 PF00248 Aldo/keto reductase family J171_00941 PF00593 TonB dependent receptor J171_00941 PF07715 TonB-dependent Receptor Plug Domain J171_00946 PF00528 Binding-protein-dependent transport system inner membrane component J171_00947 PF00005 ABC transporter J171_00949 PF02668 Taurine catabolism dioxygenase TauD, TfdA family J171_00951 PF00005 ABC transporter J171_00952 PF13472 GDSL-like Lipase/Acylhydrolase family J171_00953 PF00072 Response regulator receiver domain J171_00953 PF00486 Transcriptional regulatory protein, C terminal J171_00954 PF00512 His Kinase A (phospho-acceptor) domain J171_00954 PF08521 Two-component sensor kinase N-terminal J171_00954 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_00956 PF01219 Prokaryotic diacylglycerol kinase J171_00960 PF01790 Prolipoprotein diacylglyceryl transferase J171_00961 PF00303 Thymidylate synthase J171_00963 PF00186 Dihydrofolate reductase J171_00964 PF00158 Sigma-54 interaction domain J171_00965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J171_00965 PF08028 Acyl-CoA dehydrogenase, C-terminal domain J171_00966 PF00005 ABC transporter J171_00967 PF00528 Binding-protein-dependent transport system inner membrane component J171_00969 PF00296 Luciferase-like monooxygenase J171_00970 PF03358 NADPH-dependent FMN reductase J171_00974 PF00296 Luciferase-like monooxygenase J171_00975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J171_00976 PF00528 Binding-protein-dependent transport system inner membrane component J171_00979 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J171_00979 PF00005 ABC transporter J171_00980 PF00149 Calcineurin-like phosphoesterase J171_00981 PF04379 ApaG domain J171_00982 PF00398 Ribosomal RNA adenine dimethylase J171_00983 PF04166 Pyridoxal phosphate biosynthetic protein PdxA J171_00984 PF00639 PPIC-type PPIASE domain J171_00984 PF09312 SurA N-terminal domain J171_00985 PF03968 OstA-like protein J171_00985 PF04453 LPS transport system D J171_00988 PF00850 Histone deacetylase domain J171_00989 PF01923 Cobalamin adenosyltransferase J171_00991 PF01494 FAD binding domain J171_00992 PF01494 FAD binding domain J171_00996 PF00392 Bacterial regulatory proteins, gntR family J171_00996 PF07729 FCD domain J171_00997 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J171_00998 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit J171_00998 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J171_00999 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_00999 PF03466 LysR substrate binding domain J171_01000 PF13193 AMP-binding enzyme C-terminal domain J171_01000 PF00501 AMP-binding enzyme J171_01001 PF00171 Aldehyde dehydrogenase family J171_01002 PF00378 Enoyl-CoA hydratase/isomerase J171_01006 PF08450 SMP-30/Gluconolactonase/LRE-like region J171_01007 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J171_01007 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J171_01008 PF18125 RlmM ferredoxin-like domain J171_01008 PF01728 FtsJ-like methyltransferase J171_01011 PF00892 EamA-like transporter family J171_01012 PF00749 tRNA synthetases class I (E and Q), catalytic domain J171_01012 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J171_01015 PF00072 Response regulator receiver domain J171_01015 PF00990 Diguanylate cyclase, GGDEF domain J171_01016 PF00672 HAMP domain J171_01016 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J171_01016 PF00072 Response regulator receiver domain J171_01016 PF01627 Hpt domain J171_01016 PF00512 His Kinase A (phospho-acceptor) domain J171_01016 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_01017 PF00196 Bacterial regulatory proteins, luxR family J171_01017 PF00072 Response regulator receiver domain J171_01019 PF01625 Peptide methionine sulfoxide reductase J171_01021 PF00923 Transaldolase/Fructose-6-phosphate aldolase J171_01022 PF14760 Rnk N-terminus J171_01022 PF01272 Transcription elongation factor, GreA/GreB, C-term J171_01023 PF03466 LysR substrate binding domain J171_01023 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_01024 PF07992 Pyridine nucleotide-disulphide oxidoreductase J171_01024 PF13192 Thioredoxin domain J171_01025 PF10417 C-terminal domain of 1-Cys peroxiredoxin J171_01025 PF00578 AhpC/TSA family J171_01026 PF17827 PrmC N-terminal domain J171_01026 PF05175 Methyltransferase small domain J171_01027 PF00561 alpha/beta hydrolase fold J171_01029 PF00293 NUDIX domain J171_01030 PF01367 5'-3' exonuclease, C-terminal SAM fold J171_01030 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J171_01030 PF00476 DNA polymerase family A J171_01030 PF01612 3'-5' exonuclease J171_01036 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J171_01036 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J171_01036 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J171_01041 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J171_01042 PF02233 NAD(P) transhydrogenase beta subunit J171_01045 PF01063 Amino-transferase class IV J171_01046 PF00082 Subtilase family J171_01046 PF04151 Bacterial pre-peptidase C-terminal domain J171_01047 PF04151 Bacterial pre-peptidase C-terminal domain J171_01047 PF00082 Subtilase family J171_01048 PF00082 Subtilase family J171_01048 PF04151 Bacterial pre-peptidase C-terminal domain J171_01049 PF04073 Aminoacyl-tRNA editing domain J171_01051 PF17189 Glycosyl hydrolase family 30 beta sandwich domain J171_01051 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain J171_01054 PF03358 NADPH-dependent FMN reductase J171_01055 PF03631 Virulence factor BrkB J171_01056 PF08534 Redoxin J171_01057 PF00708 Acylphosphatase J171_01059 PF03976 Polyphosphate kinase 2 (PPK2) J171_01060 PF00994 Probable molybdopterin binding domain J171_01062 PF03462 PCRF domain J171_01062 PF00472 RF-1 domain J171_01063 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J171_01063 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J171_01063 PF01488 Shikimate / quinate 5-dehydrogenase J171_01065 PF03550 Outer membrane lipoprotein LolB J171_01066 PF00288 GHMP kinases N terminal domain J171_01066 PF08544 GHMP kinases C terminal J171_01068 PF14572 Phosphoribosyl synthetase-associated domain J171_01068 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J171_01069 PF01386 Ribosomal L25p family J171_01069 PF14693 Ribosomal protein TL5, C-terminal domain J171_01070 PF01195 Peptidyl-tRNA hydrolase J171_01071 PF06071 Protein of unknown function (DUF933) J171_01071 PF01926 50S ribosome-binding GTPase J171_01075 PF00009 Elongation factor Tu GTP binding domain J171_01075 PF03144 Elongation factor Tu domain 2 J171_01075 PF03143 Elongation factor Tu C-terminal domain J171_01077 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J171_01078 PF02357 Transcription termination factor nusG J171_01078 PF00467 KOW motif J171_01079 PF03946 Ribosomal protein L11, N-terminal domain J171_01079 PF00298 Ribosomal protein L11, RNA binding domain J171_01080 PF00687 Ribosomal protein L1p/L10e family J171_01081 PF00466 Ribosomal protein L10 J171_01082 PF00542 Ribosomal protein L7/L12 C-terminal domain J171_01082 PF16320 Ribosomal protein L7/L12 dimerisation domain J171_01084 PF00562 RNA polymerase Rpb2, domain 6 J171_01084 PF04560 RNA polymerase Rpb2, domain 7 J171_01084 PF04561 RNA polymerase Rpb2, domain 2 J171_01084 PF10385 RNA polymerase beta subunit external 1 domain J171_01084 PF04563 RNA polymerase beta subunit J171_01084 PF04565 RNA polymerase Rpb2, domain 3 J171_01085 PF04983 RNA polymerase Rpb1, domain 3 J171_01085 PF05000 RNA polymerase Rpb1, domain 4 J171_01085 PF00623 RNA polymerase Rpb1, domain 2 J171_01085 PF04997 RNA polymerase Rpb1, domain 1 J171_01085 PF04998 RNA polymerase Rpb1, domain 5 J171_01086 PF00164 Ribosomal protein S12/S23 J171_01087 PF00177 Ribosomal protein S7p/S5e J171_01088 PF03764 Elongation factor G, domain IV J171_01088 PF03144 Elongation factor Tu domain 2 J171_01088 PF14492 Elongation Factor G, domain II J171_01088 PF00009 Elongation factor Tu GTP binding domain J171_01088 PF00679 Elongation factor G C-terminus J171_01089 PF00009 Elongation factor Tu GTP binding domain J171_01089 PF03144 Elongation factor Tu domain 2 J171_01089 PF03143 Elongation factor Tu C-terminal domain J171_01090 PF00338 Ribosomal protein S10p/S20e J171_01091 PF00297 Ribosomal protein L3 J171_01092 PF00573 Ribosomal protein L4/L1 family J171_01093 PF00276 Ribosomal protein L23 J171_01094 PF00181 Ribosomal Proteins L2, RNA binding domain J171_01094 PF03947 Ribosomal Proteins L2, C-terminal domain J171_01095 PF00203 Ribosomal protein S19 J171_01096 PF00237 Ribosomal protein L22p/L17e J171_01097 PF00189 Ribosomal protein S3, C-terminal domain J171_01097 PF07650 KH domain J171_01098 PF00252 Ribosomal protein L16p/L10e J171_01099 PF00831 Ribosomal L29 protein J171_01100 PF00366 Ribosomal protein S17 J171_01101 PF00238 Ribosomal protein L14p/L23e J171_01102 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J171_01102 PF00467 KOW motif J171_01103 PF00673 ribosomal L5P family C-terminus J171_01103 PF00281 Ribosomal protein L5 J171_01104 PF00253 Ribosomal protein S14p/S29e J171_01105 PF00410 Ribosomal protein S8 J171_01106 PF00347 Ribosomal protein L6 J171_01107 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J171_01108 PF00333 Ribosomal protein S5, N-terminal domain J171_01108 PF03719 Ribosomal protein S5, C-terminal domain J171_01109 PF00327 Ribosomal protein L30p/L7e J171_01110 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J171_01111 PF00344 SecY translocase J171_01112 PF00416 Ribosomal protein S13/S18 J171_01113 PF00411 Ribosomal protein S11 J171_01114 PF01479 S4 domain J171_01114 PF00163 Ribosomal protein S4/S9 N-terminal domain J171_01115 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J171_01115 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J171_01115 PF01000 RNA polymerase Rpb3/RpoA insert domain J171_01116 PF01196 Ribosomal protein L17 J171_01117 PF02600 Disulfide bond formation protein DsbB J171_01119 PF01474 Class-II DAHP synthetase family J171_01121 PF01425 Amidase J171_01124 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J171_01125 PF00056 lactate/malate dehydrogenase, NAD binding domain J171_01125 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J171_01126 PF00043 Glutathione S-transferase, C-terminal domain J171_01126 PF02798 Glutathione S-transferase, N-terminal domain J171_01128 PF07992 Pyridine nucleotide-disulphide oxidoreductase J171_01128 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J171_01129 PF08240 Alcohol dehydrogenase GroES-like domain J171_01129 PF00107 Zinc-binding dehydrogenase J171_01130 PF05736 OprF membrane domain J171_01130 PF00691 OmpA family J171_01132 PF00849 RNA pseudouridylate synthase J171_01134 PF00155 Aminotransferase class I and II J171_01136 PF00528 Binding-protein-dependent transport system inner membrane component J171_01137 PF00528 Binding-protein-dependent transport system inner membrane component J171_01138 PF12857 TOBE-like domain J171_01138 PF17850 CysA C-terminal regulatory domain J171_01138 PF00005 ABC transporter J171_01140 PF08240 Alcohol dehydrogenase GroES-like domain J171_01140 PF00107 Zinc-binding dehydrogenase J171_01142 PF05506 Domain of unknown function (DUF756) J171_01142 PF04185 Phosphoesterase family J171_01143 PF10459 Peptidase S46 J171_01144 PF10459 Peptidase S46 J171_01145 PF00300 Histidine phosphatase superfamily (branch 1) J171_01146 PF08245 Mur ligase middle domain J171_01146 PF02875 Mur ligase family, glutamate ligase domain J171_01149 PF00156 Phosphoribosyl transferase domain J171_01150 PF04305 Protein of unknown function (DUF455) J171_01154 PF00149 Calcineurin-like phosphoesterase J171_01156 PF01569 PAP2 superfamily J171_01157 PF13439 Glycosyltransferase Family 4 J171_01157 PF00534 Glycosyl transferases group 1 J171_01158 PF02541 Ppx/GppA phosphatase family J171_01159 PF13089 Polyphosphate kinase N-terminal domain J171_01159 PF02503 Polyphosphate kinase middle domain J171_01159 PF13090 Polyphosphate kinase C-terminal domain 2 J171_01159 PF17941 Polyphosphate kinase C-terminal domain 1 J171_01160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_01160 PF00989 PAS fold J171_01160 PF11808 Phosphate regulon sensor protein PhoR J171_01160 PF00512 His Kinase A (phospho-acceptor) domain J171_01161 PF00072 Response regulator receiver domain J171_01161 PF00486 Transcriptional regulatory protein, C terminal J171_01162 PF13181 Tetratricopeptide repeat J171_01162 PF01435 Peptidase family M48 J171_01163 PF00462 Glutaredoxin J171_01165 PF00180 Isocitrate/isopropylmalate dehydrogenase J171_01172 PF01527 Transposase J171_01195 PF01527 Transposase J171_01196 PF00665 Integrase core domain J171_01196 PF13276 HTH-like domain J171_01196 PF13333 Integrase core domain J171_01199 PF00512 His Kinase A (phospho-acceptor) domain J171_01199 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_01199 PF00989 PAS fold J171_01202 PF05697 Bacterial trigger factor protein (TF) J171_01202 PF05698 Bacterial trigger factor protein (TF) C-terminus J171_01203 PF00574 Clp protease J171_01204 PF10431 C-terminal, D2-small domain, of ClpB protein J171_01204 PF07724 AAA domain (Cdc48 subfamily) J171_01204 PF06689 ClpX C4-type zinc finger J171_01205 PF05362 Lon protease (S16) C-terminal proteolytic domain J171_01205 PF00004 ATPase family associated with various cellular activities (AAA) J171_01205 PF02190 ATP-dependent protease La (LON) substrate-binding domain J171_01206 PF00216 Bacterial DNA-binding protein J171_01212 PF05257 CHAP domain J171_01212 PF01476 LysM domain J171_01213 PF16123 Hydroxyacylglutathione hydrolase C-terminus J171_01213 PF00753 Metallo-beta-lactamase superfamily J171_01215 PF00075 RNase H J171_01216 PF00929 Exonuclease J171_01220 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J171_01222 PF00753 Metallo-beta-lactamase superfamily J171_01222 PF12706 Beta-lactamase superfamily domain J171_01223 PF06463 Molybdenum Cofactor Synthesis C J171_01223 PF04055 Radical SAM superfamily J171_01224 PF01967 MoaC family J171_01225 PF02597 ThiS family J171_01226 PF02391 MoaE protein J171_01229 PF01527 Transposase J171_01236 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding J171_01236 PF12169 DNA polymerase III subunits gamma and tau domain III J171_01236 PF12170 DNA polymerase III tau subunit V interacting with alpha J171_01237 PF02575 YbaB/EbfC DNA-binding family J171_01238 PF02132 RecR protein J171_01238 PF13662 Toprim domain J171_01239 PF01230 HIT domain J171_01241 PF11992 Domain of unknown function (DUF3488) J171_01241 PF13559 Domain of unknown function (DUF4129) J171_01241 PF01841 Transglutaminase-like superfamily J171_01243 PF17863 AAA lid domain J171_01243 PF07726 ATPase family associated with various cellular activities (AAA) J171_01247 PF02545 Maf-like protein J171_01248 PF02620 Large ribosomal RNA subunit accumulation protein YceD J171_01249 PF01783 Ribosomal L32p protein family J171_01250 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J171_01250 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J171_01252 PF00698 Acyl transferase domain J171_01254 PF00550 Phosphopantetheine attachment site J171_01255 PF00109 Beta-ketoacyl synthase, N-terminal domain J171_01255 PF02801 Beta-ketoacyl synthase, C-terminal domain J171_01256 PF04715 Anthranilate synthase component I, N terminal region J171_01256 PF00425 chorismate binding enzyme J171_01257 PF02618 YceG-like family J171_01258 PF09115 DNA polymerase III, delta subunit, C terminal J171_01262 PF00158 Sigma-54 interaction domain J171_01262 PF06506 Propionate catabolism activator J171_01262 PF02954 Bacterial regulatory protein, Fis family J171_01264 PF00285 Citrate synthase, C-terminal domain J171_01265 PF00330 Aconitase family (aconitate hydratase) J171_01265 PF00694 Aconitase C-terminal domain J171_01266 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH J171_01268 PF04303 PrpF protein J171_01269 PF00593 TonB dependent receptor J171_01269 PF07715 TonB-dependent Receptor Plug Domain J171_01271 PF17962 Bacterial macroglobulin domain 6 J171_01271 PF01835 MG2 domain J171_01271 PF11974 Bacterial alpha-2-macroglobulin MG3 domain J171_01271 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain J171_01271 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain J171_01271 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain J171_01271 PF00207 Alpha-2-macroglobulin family J171_01271 PF07703 Alpha-2-macroglobulin bait region domain J171_01274 PF00912 Transglycosylase J171_01274 PF00905 Penicillin binding protein transpeptidase domain J171_01274 PF06832 Penicillin-Binding Protein C-terminus Family J171_01276 PF08534 Redoxin J171_01278 PF00226 DnaJ domain J171_01278 PF01556 DnaJ C terminal domain J171_01280 PF00072 Response regulator receiver domain J171_01282 PF12221 Bacterial membrane protein N terminal J171_01282 PF01145 SPFH domain / Band 7 family J171_01283 PF01145 SPFH domain / Band 7 family J171_01285 PF00709 Adenylosuccinate synthetase J171_01286 PF01433 Peptidase family M1 domain J171_01286 PF11838 ERAP1-like C-terminal domain J171_01289 PF00440 Bacterial regulatory proteins, tetR family J171_01302 PF00300 Histidine phosphatase superfamily (branch 1) J171_01302 PF13456 Reverse transcriptase-like J171_01303 PF01256 Carbohydrate kinase J171_01305 PF00723 Glycosyl hydrolases family 15 J171_01307 PF17678 Glycosyl hydrolase family 92 N-terminal domain J171_01307 PF07971 Glycosyl hydrolase family 92 J171_01311 PF07992 Pyridine nucleotide-disulphide oxidoreductase J171_01315 PF17755 UvrA DNA-binding domain J171_01316 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J171_01316 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J171_01317 PF03450 CO dehydrogenase flavoprotein C-terminal domain J171_01317 PF00941 FAD binding domain in molybdopterin dehydrogenase J171_01318 PF01799 [2Fe-2S] binding domain J171_01318 PF00111 2Fe-2S iron-sulfur cluster binding domain J171_01325 PF00717 Peptidase S24-like J171_01325 PF01726 LexA DNA binding domain J171_01328 PF14579 Helix-hairpin-helix motif J171_01328 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J171_01328 PF07733 Bacterial DNA polymerase III alpha NTPase domain J171_01328 PF02811 PHP domain J171_01329 PF00326 Prolyl oligopeptidase family J171_01331 PF03169 OPT oligopeptide transporter protein J171_01334 PF00326 Prolyl oligopeptidase family J171_01334 PF07676 WD40-like Beta Propeller Repeat J171_01334 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J171_01337 PF02311 AraC-like ligand binding domain J171_01337 PF12833 Helix-turn-helix domain J171_01342 PF00199 Catalase J171_01342 PF06628 Catalase-related immune-responsive J171_01342 PF18011 C-terminal domain found in long catalases J171_01343 PF00248 Aldo/keto reductase family J171_01344 PF00135 Carboxylesterase family J171_01345 PF02347 Glycine cleavage system P-protein J171_01348 PF07690 Major Facilitator Superfamily J171_01351 PF00884 Sulfatase J171_01351 PF08019 Phosphoethanolamine transferase EptA/EptB J171_01354 PF00486 Transcriptional regulatory protein, C terminal J171_01354 PF00072 Response regulator receiver domain J171_01355 PF00512 His Kinase A (phospho-acceptor) domain J171_01355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_01355 PF08521 Two-component sensor kinase N-terminal J171_01357 PF03776 Septum formation topological specificity factor MinE J171_01358 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J171_01359 PF03775 Septum formation inhibitor MinC, C-terminal domain J171_01359 PF05209 Septum formation inhibitor MinC, N-terminal domain J171_01361 PF07730 Histidine kinase J171_01362 PF00072 Response regulator receiver domain J171_01362 PF00196 Bacterial regulatory proteins, luxR family J171_01365 PF00730 HhH-GPD superfamily base excision DNA repair protein J171_01370 PF02222 ATP-grasp domain J171_01372 PF04376 Arginine-tRNA-protein transferase, N terminus J171_01372 PF04377 Arginine-tRNA-protein transferase, C terminus J171_01378 PF00378 Enoyl-CoA hydratase/isomerase J171_01381 PF17755 UvrA DNA-binding domain J171_01381 PF17760 UvrA interaction domain J171_01381 PF00005 ABC transporter J171_01382 PF00829 Ribosomal prokaryotic L21 protein J171_01383 PF01016 Ribosomal L27 protein J171_01384 PF01926 50S ribosome-binding GTPase J171_01384 PF01018 GTP1/OBG J171_01385 PF01649 Ribosomal protein S20 J171_01386 PF03023 Lipid II flippase MurJ J171_01387 PF06574 FAD synthetase J171_01387 PF01687 Riboflavin kinase J171_01388 PF06827 Zinc finger found in FPG and IleRS J171_01388 PF08264 Anticodon-binding domain of tRNA J171_01388 PF00133 tRNA synthetases class I (I, L, M and V) J171_01389 PF01252 Signal peptidase (SPase) II J171_01390 PF02401 LytB protein J171_01392 PF06481 COX Aromatic Rich Motif J171_01392 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J171_01393 PF00115 Cytochrome C and Quinol oxidase polypeptide I J171_01394 PF00510 Cytochrome c oxidase subunit III J171_01395 PF03626 Prokaryotic Cytochrome C oxidase subunit IV J171_01397 PF18073 Rubredoxin metal binding domain J171_01398 PF05656 Protein of unknown function (DUF805) J171_01400 PF12833 Helix-turn-helix domain J171_01401 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_01401 PF00183 Hsp90 protein J171_01403 PF01740 STAS domain J171_01403 PF08678 Rsbr N terminal J171_01404 PF01740 STAS domain J171_01405 PF13581 Histidine kinase-like ATPase domain J171_01407 PF01627 Hpt domain J171_01407 PF17149 Periplasmic sensor domain found in signal transduction proteins J171_01407 PF00672 HAMP domain J171_01407 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_01407 PF00512 His Kinase A (phospho-acceptor) domain J171_01407 PF00072 Response regulator receiver domain J171_01408 PF00072 Response regulator receiver domain J171_01408 PF13188 PAS domain J171_01408 PF08448 PAS fold J171_01408 PF00512 His Kinase A (phospho-acceptor) domain J171_01408 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_01409 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J171_01409 PF04616 Glycosyl hydrolases family 43 J171_01410 PF07715 TonB-dependent Receptor Plug Domain J171_01410 PF00593 TonB dependent receptor J171_01411 PF00085 Thioredoxin J171_01412 PF07237 Protein of unknown function (DUF1428) J171_01413 PF00512 His Kinase A (phospho-acceptor) domain J171_01413 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_01413 PF13492 GAF domain J171_01413 PF13493 Domain of unknown function (DUF4118) J171_01413 PF02702 Osmosensitive K+ channel His kinase sensor domain J171_01414 PF01339 CheB methylesterase J171_01415 PF01739 CheR methyltransferase, SAM binding domain J171_01415 PF03705 CheR methyltransferase, all-alpha domain J171_01416 PF00672 HAMP domain J171_01416 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_01416 PF00512 His Kinase A (phospho-acceptor) domain J171_01416 PF01627 Hpt domain J171_01416 PF00072 Response regulator receiver domain J171_01416 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J171_01417 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_01417 PF00072 Response regulator receiver domain J171_01417 PF13426 PAS domain J171_01418 PF00072 Response regulator receiver domain J171_01419 PF00722 Glycosyl hydrolases family 16 J171_01420 PF06964 Alpha-L-arabinofuranosidase C-terminal domain J171_01421 PF01263 Aldose 1-epimerase J171_01422 PF01578 Cytochrome C assembly protein J171_01423 PF02881 SRP54-type protein, helical bundle domain J171_01423 PF00448 SRP54-type protein, GTPase domain J171_01423 PF02978 Signal peptide binding domain J171_01424 PF03060 Nitronate monooxygenase J171_01425 PF01063 Amino-transferase class IV J171_01426 PF00886 Ribosomal protein S16 J171_01427 PF01782 RimM N-terminal domain J171_01427 PF05239 PRC-barrel domain J171_01428 PF01746 tRNA (Guanine-1)-methyltransferase J171_01429 PF01245 Ribosomal protein L19 J171_01430 PF01554 MatE J171_01431 PF01554 MatE J171_01434 PF01479 S4 domain J171_01435 PF00141 Peroxidase J171_01437 PF05192 MutS domain III J171_01437 PF00488 MutS domain V J171_01437 PF05190 MutS family domain IV J171_01437 PF05188 MutS domain II J171_01437 PF01624 MutS domain I J171_01440 PF03527 RHS protein J171_01440 PF05593 RHS Repeat J171_01444 PF02837 Glycosyl hydrolases family 2, sugar binding domain J171_01444 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J171_01444 PF00703 Glycosyl hydrolases family 2 J171_01444 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J171_01444 PF16355 Domain of unknown function (DUF4982) J171_01445 PF07745 Glycosyl hydrolase family 53 J171_01447 PF01381 Helix-turn-helix J171_01447 PF09856 Predicted transcriptional regulator (DUF2083) J171_01447 PF06114 IrrE N-terminal-like domain J171_01448 PF00171 Aldehyde dehydrogenase family J171_01449 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J171_01449 PF02770 Acyl-CoA dehydrogenase, middle domain J171_01449 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J171_01450 PF00378 Enoyl-CoA hydratase/isomerase J171_01451 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J171_01451 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J171_01451 PF00378 Enoyl-CoA hydratase/isomerase J171_01452 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J171_01452 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J171_01453 PF01545 Cation efflux family J171_01454 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J171_01454 PF00378 Enoyl-CoA hydratase/isomerase J171_01454 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J171_01455 PF08281 Sigma-70, region 4 J171_01455 PF04542 Sigma-70 region 2 J171_01457 PF13180 PDZ domain J171_01458 PF06421 GTP-binding protein LepA C-terminus J171_01458 PF00009 Elongation factor Tu GTP binding domain J171_01458 PF03144 Elongation factor Tu domain 2 J171_01458 PF00679 Elongation factor G C-terminus J171_01459 PF10502 Signal peptidase, peptidase S26 J171_01461 PF14622 Ribonuclease-III-like J171_01461 PF00035 Double-stranded RNA binding motif J171_01462 PF01926 50S ribosome-binding GTPase J171_01462 PF07650 KH domain J171_01463 PF11967 Recombination protein O N terminal J171_01463 PF02565 Recombination protein O C terminal J171_01465 PF05958 tRNA (Uracil-5-)-methyltransferase J171_01467 PF01323 DSBA-like thioredoxin domain J171_01468 PF01593 Flavin containing amine oxidoreductase J171_01469 PF04244 Deoxyribodipyrimidine photo-lyase-related protein J171_01470 PF00933 Glycosyl hydrolase family 3 N terminal domain J171_01472 PF01048 Phosphorylase superfamily J171_01473 PF00313 'Cold-shock' DNA-binding domain J171_01474 PF01494 FAD binding domain J171_01476 PF00270 DEAD/DEAH box helicase J171_01476 PF08494 DEAD/H associated J171_01476 PF00271 Helicase conserved C-terminal domain J171_01477 PF04675 DNA ligase N terminus J171_01477 PF01068 ATP dependent DNA ligase domain J171_01477 PF04679 ATP dependent DNA ligase C terminal region J171_01479 PF04675 DNA ligase N terminus J171_01479 PF04679 ATP dependent DNA ligase C terminal region J171_01479 PF01068 ATP dependent DNA ligase domain J171_01482 PF00990 Diguanylate cyclase, GGDEF domain J171_01482 PF00072 Response regulator receiver domain J171_01485 PF00108 Thiolase, N-terminal domain J171_01485 PF02803 Thiolase, C-terminal domain J171_01486 PF00082 Subtilase family J171_01486 PF03797 Autotransporter beta-domain J171_01486 PF12951 Passenger-associated-transport-repeat J171_01487 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J171_01487 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain J171_01489 PF01863 Protein of unknown function DUF45 J171_01490 PF07043 Protein of unknown function (DUF1328) J171_01492 PF01258 Prokaryotic dksA/traR C4-type zinc finger J171_01496 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J171_01498 PF03831 PhnA domain J171_01498 PF08274 PhnA Zinc-Ribbon J171_01499 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J171_01500 PF07690 Major Facilitator Superfamily J171_01507 PF03706 Lysylphosphatidylglycerol synthase TM region J171_01507 PF09924 Uncharacterised conserved protein (DUF2156) J171_01510 PF01042 Endoribonuclease L-PSP J171_01519 PF04545 Sigma-70, region 4 J171_01519 PF04542 Sigma-70 region 2 J171_01522 PF04060 Putative Fe-S cluster J171_01524 PF09334 tRNA synthetases class I (M) J171_01524 PF01588 Putative tRNA binding domain J171_01527 PF13732 Domain of unknown function (DUF4162) J171_01527 PF00005 ABC transporter J171_01528 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J171_01529 PF00324 Amino acid permease J171_01530 PF02574 Homocysteine S-methyltransferase J171_01532 PF02592 Putative vitamin uptake transporter J171_01536 PF03551 Transcriptional regulator PadR-like family J171_01543 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J171_01544 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J171_01544 PF01336 OB-fold nucleic acid binding domain J171_01544 PF07733 Bacterial DNA polymerase III alpha NTPase domain J171_01544 PF14579 Helix-hairpin-helix motif J171_01544 PF02811 PHP domain J171_01545 PF01351 Ribonuclease HII J171_01546 PF02684 Lipid-A-disaccharide synthetase J171_01547 PF00132 Bacterial transferase hexapeptide (six repeats) J171_01547 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 J171_01548 PF07977 FabA-like domain J171_01549 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD J171_01549 PF00132 Bacterial transferase hexapeptide (six repeats) J171_01551 PF07244 Surface antigen variable number repeat J171_01551 PF01103 Surface antigen J171_01552 PF02163 Peptidase family M50 J171_01552 PF17820 PDZ domain J171_01553 PF13288 DXP reductoisomerase C-terminal domain J171_01553 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J171_01553 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J171_01555 PF01255 Putative undecaprenyl diphosphate synthase J171_01556 PF01765 Ribosome recycling factor J171_01557 PF00696 Amino acid kinase family J171_01558 PF00990 Diguanylate cyclase, GGDEF domain J171_01558 PF00072 Response regulator receiver domain J171_01559 PF00889 Elongation factor TS J171_01560 PF00318 Ribosomal protein S2 J171_01567 PF00557 Metallopeptidase family M24 J171_01568 PF08335 GlnD PII-uridylyltransferase J171_01568 PF01966 HD domain J171_01568 PF01909 Nucleotidyltransferase domain J171_01569 PF14602 Hexapeptide repeat of succinyl-transferase J171_01569 PF00132 Bacterial transferase hexapeptide (six repeats) J171_01569 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal J171_01570 PF03960 ArsC family J171_01571 PF07687 Peptidase dimerisation domain J171_01571 PF01546 Peptidase family M20/M25/M40 J171_01572 PF00733 Asparagine synthase J171_01572 PF13537 Glutamine amidotransferase domain J171_01574 PF00593 TonB dependent receptor J171_01574 PF07715 TonB-dependent Receptor Plug Domain J171_01576 PF01804 Penicillin amidase J171_01577 PF00210 Ferritin-like domain J171_01578 PF05724 Thiopurine S-methyltransferase (TPMT) J171_01580 PF03989 DNA gyrase C-terminal domain, beta-propeller J171_01580 PF00521 DNA gyrase/topoisomerase IV, subunit A J171_01583 PF02321 Outer membrane efflux protein J171_01584 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J171_01584 PF00529 HlyD membrane-fusion protein of T1SS J171_01585 PF07690 Major Facilitator Superfamily J171_01587 PF01915 Glycosyl hydrolase family 3 C-terminal domain J171_01587 PF00933 Glycosyl hydrolase family 3 N terminal domain J171_01587 PF14310 Fibronectin type III-like domain J171_01589 PF00854 POT family J171_01594 PF12802 MarR family J171_01595 PF01432 Peptidase family M3 J171_01596 PF00255 Glutathione peroxidase J171_01597 PF00970 Oxidoreductase FAD-binding domain J171_01597 PF00175 Oxidoreductase NAD-binding domain J171_01598 PF00005 ABC transporter J171_01599 PF05681 Fumarate hydratase (Fumerase) J171_01599 PF05683 Fumarase C-terminus J171_01601 PF00484 Carbonic anhydrase J171_01602 PF02253 Phospholipase A1 J171_01604 PF00313 'Cold-shock' DNA-binding domain J171_01607 PF00899 ThiF family J171_01608 PF01026 TatD related DNase J171_01611 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J171_01611 PF02770 Acyl-CoA dehydrogenase, middle domain J171_01611 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J171_01613 PF02798 Glutathione S-transferase, N-terminal domain J171_01613 PF00043 Glutathione S-transferase, C-terminal domain J171_01614 PF13537 Glutamine amidotransferase domain J171_01614 PF00733 Asparagine synthase J171_01615 PF03358 NADPH-dependent FMN reductase J171_01616 PF00772 DnaB-like helicase N terminal domain J171_01616 PF03796 DnaB-like helicase C terminal domain J171_01617 PF00875 DNA photolyase J171_01617 PF03441 FAD binding domain of DNA photolyase J171_01618 PF05736 OprF membrane domain J171_01618 PF00691 OmpA family J171_01620 PF03466 LysR substrate binding domain J171_01620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_01623 PF00529 HlyD membrane-fusion protein of T1SS J171_01623 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J171_01624 PF00873 AcrB/AcrD/AcrF family J171_01625 PF00106 short chain dehydrogenase J171_01626 PF02321 Outer membrane efflux protein J171_01627 PF00990 Diguanylate cyclase, GGDEF domain J171_01627 PF08448 PAS fold J171_01629 PF00990 Diguanylate cyclase, GGDEF domain J171_01646 PF01527 Transposase J171_01655 PF00082 Subtilase family J171_01656 PF01668 SmpB protein J171_01657 PF03364 Polyketide cyclase / dehydrase and lipid transport J171_01658 PF03658 RnfH family Ubiquitin J171_01659 PF04355 SmpA / OmlA family J171_01660 PF01475 Ferric uptake regulator family J171_01661 PF02463 RecF/RecN/SMC N terminal domain J171_01662 PF01628 HrcA protein C terminal domain J171_01662 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding J171_01663 PF01025 GrpE J171_01664 PF00012 Hsp70 protein J171_01665 PF00226 DnaJ domain J171_01665 PF00684 DnaJ central domain J171_01665 PF01556 DnaJ C terminal domain J171_01667 PF08543 Phosphomethylpyrimidine kinase J171_01673 PF03412 Peptidase C39 family J171_01673 PF00664 ABC transporter transmembrane region J171_01673 PF00005 ABC transporter J171_01674 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_01674 PF03466 LysR substrate binding domain J171_01675 PF00005 ABC transporter J171_01675 PF00664 ABC transporter transmembrane region J171_01676 PF01205 Uncharacterized protein family UPF0029 J171_01677 PF03641 Possible lysine decarboxylase J171_01678 PF07992 Pyridine nucleotide-disulphide oxidoreductase J171_01678 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J171_01679 PF02817 e3 binding domain J171_01679 PF00364 Biotin-requiring enzyme J171_01679 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J171_01680 PF16078 2-oxoglutarate dehydrogenase N-terminus J171_01680 PF02779 Transketolase, pyrimidine binding domain J171_01680 PF16870 2-oxoglutarate dehydrogenase C-terminal J171_01680 PF00676 Dehydrogenase E1 component J171_01682 PF08007 Cupin superfamily protein J171_01684 PF08328 Adenylosuccinate lyase C-terminal J171_01684 PF00206 Lyase J171_01686 PF00571 CBS domain J171_01686 PF03471 Transporter associated domain J171_01686 PF01595 Cyclin M transmembrane N-terminal domain J171_01687 PF10415 Fumarase C C-terminus J171_01687 PF00206 Lyase J171_01692 PF00005 ABC transporter J171_01693 PF00392 Bacterial regulatory proteins, gntR family J171_01695 PF00255 Glutathione peroxidase J171_01696 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J171_01696 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J171_01697 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J171_01697 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J171_01697 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J171_01698 PF04102 SlyX J171_01701 PF00356 Bacterial regulatory proteins, lacI family J171_01702 PF07690 Major Facilitator Superfamily J171_01703 PF00294 pfkB family carbohydrate kinase J171_01705 PF02965 Vitamin B12 dependent methionine synthase, activation domain J171_01705 PF02607 B12 binding domain J171_01705 PF02310 B12 binding domain J171_01705 PF00809 Pterin binding enzyme J171_01705 PF02574 Homocysteine S-methyltransferase J171_01706 PF02574 Homocysteine S-methyltransferase J171_01706 PF00809 Pterin binding enzyme J171_01707 PF01209 ubiE/COQ5 methyltransferase family J171_01708 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J171_01708 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J171_01708 PF02770 Acyl-CoA dehydrogenase, middle domain J171_01711 PF17876 Cold shock domain J171_01711 PF08206 Ribonuclease B OB domain J171_01711 PF00773 RNB domain J171_01711 PF00575 S1 RNA binding domain J171_01711 PF08461 Ribonuclease R winged-helix domain J171_01713 PF00588 SpoU rRNA Methylase family J171_01713 PF08032 RNA 2'-O ribose methyltransferase substrate binding J171_01714 PF00990 Diguanylate cyclase, GGDEF domain J171_01714 PF07694 5TMR of 5TMR-LYT J171_01715 PF00929 Exonuclease J171_01717 PF01895 PhoU domain J171_01718 PF00005 ABC transporter J171_01719 PF00528 Binding-protein-dependent transport system inner membrane component J171_01720 PF00528 Binding-protein-dependent transport system inner membrane component J171_01721 PF12849 PBP superfamily domain J171_01722 PF12849 PBP superfamily domain J171_01725 PF00484 Carbonic anhydrase J171_01726 PF00916 Sulfate permease family J171_01726 PF01740 STAS domain J171_01727 PF10576 Iron-sulfur binding domain of endonuclease III J171_01727 PF00633 Helix-hairpin-helix motif J171_01727 PF00730 HhH-GPD superfamily base excision DNA repair protein J171_01729 PF00378 Enoyl-CoA hydratase/isomerase J171_01730 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J171_01730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J171_01731 PF00293 NUDIX domain J171_01732 PF00581 Rhodanese-like domain J171_01739 PF10672 S-adenosylmethionine-dependent methyltransferase J171_01739 PF02926 THUMP domain J171_01739 PF01170 Putative RNA methylase family UPF0020 J171_01740 PF01513 ATP-NAD kinase J171_01744 PF08411 Exonuclease C-terminal J171_01744 PF00929 Exonuclease J171_01745 PF01494 FAD binding domain J171_01746 PF00266 Aminotransferase class-V J171_01748 PF06052 3-hydroxyanthranilic acid dioxygenase J171_01749 PF00484 Carbonic anhydrase J171_01758 PF00072 Response regulator receiver domain J171_01758 PF00196 Bacterial regulatory proteins, luxR family J171_01761 PF04299 Putative FMN-binding domain J171_01765 PF00152 tRNA synthetases class II (D, K and N) J171_01765 PF01336 OB-fold nucleic acid binding domain J171_01766 PF01521 Iron-sulphur cluster biosynthesis J171_01767 PF01250 Ribosomal protein S6 J171_01768 PF01084 Ribosomal protein S18 J171_01769 PF01281 Ribosomal protein L9, N-terminal domain J171_01769 PF03948 Ribosomal protein L9, C-terminal domain J171_01770 PF02463 RecF/RecN/SMC N terminal domain J171_01771 PF04354 ZipA, C-terminal FtsZ-binding domain J171_01773 PF00155 Aminotransferase class I and II J171_01774 PF12826 Helix-hairpin-helix motif J171_01774 PF01653 NAD-dependent DNA ligase adenylation domain J171_01774 PF00533 BRCA1 C Terminus (BRCT) domain J171_01774 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J171_01774 PF03120 NAD-dependent DNA ligase OB-fold domain J171_01775 PF00152 tRNA synthetases class II (D, K and N) J171_01777 PF01008 Initiation factor 2 subunit family J171_01778 PF00521 DNA gyrase/topoisomerase IV, subunit A J171_01778 PF03989 DNA gyrase C-terminal domain, beta-propeller J171_01779 PF13360 PQQ-like domain J171_01781 PF17392 Urocanase C-terminal domain J171_01781 PF17391 Urocanase N-terminal domain J171_01781 PF01175 Urocanase Rossmann-like domain J171_01783 PF00221 Aromatic amino acid lyase J171_01784 PF07969 Amidohydrolase family J171_01786 PF00392 Bacterial regulatory proteins, gntR family J171_01786 PF07702 UTRA domain J171_01792 PF01794 Ferric reductase like transmembrane component J171_01793 PF00174 Oxidoreductase molybdopterin binding domain J171_01794 PF00266 Aminotransferase class-V J171_01795 PF01842 ACT domain J171_01795 PF00800 Prephenate dehydratase J171_01795 PF01817 Chorismate mutase type II J171_01796 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J171_01798 PF03544 Gram-negative bacterial TonB protein C-terminal J171_01799 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J171_01799 PF02403 Seryl-tRNA synthetase N-terminal domain J171_01800 PF02525 Flavodoxin-like fold J171_01801 PF03466 LysR substrate binding domain J171_01801 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_01806 PF01527 Transposase J171_01807 PF00665 Integrase core domain J171_01807 PF13276 HTH-like domain J171_01807 PF13333 Integrase core domain J171_01812 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_01812 PF02203 Tar ligand binding domain homologue J171_01812 PF00672 HAMP domain J171_01815 PF13188 PAS domain J171_01815 PF00512 His Kinase A (phospho-acceptor) domain J171_01815 PF08448 PAS fold J171_01815 PF00072 Response regulator receiver domain J171_01815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_01816 PF00072 Response regulator receiver domain J171_01816 PF00486 Transcriptional regulatory protein, C terminal J171_01817 PF06745 KaiC J171_01818 PF00072 Response regulator receiver domain J171_01818 PF13426 PAS domain J171_01818 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_01820 PF03918 Cytochrome C biogenesis protein J171_01821 PF08534 Redoxin J171_01822 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J171_01822 PF01578 Cytochrome C assembly protein J171_01823 PF03100 CcmE J171_01825 PF01578 Cytochrome C assembly protein J171_01826 PF00082 Subtilase family J171_01828 PF08281 Sigma-70, region 4 J171_01828 PF04542 Sigma-70 region 2 J171_01831 PF00034 Cytochrome c J171_01834 PF05523 WxcM-like, C-terminal J171_01838 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J171_01839 PF01943 Polysaccharide biosynthesis protein J171_01840 PF00535 Glycosyl transferase family 2 J171_01843 PF08241 Methyltransferase domain J171_01847 PF13579 Glycosyl transferase 4-like domain J171_01847 PF00534 Glycosyl transferases group 1 J171_01850 PF00005 ABC transporter J171_01851 PF00664 ABC transporter transmembrane region J171_01851 PF00005 ABC transporter J171_01852 PF07690 Major Facilitator Superfamily J171_01853 PF00296 Luciferase-like monooxygenase J171_01856 PF01595 Cyclin M transmembrane N-terminal domain J171_01856 PF03471 Transporter associated domain J171_01856 PF00571 CBS domain J171_01858 PF01384 Phosphate transporter family J171_01861 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_01861 PF01751 Toprim domain J171_01861 PF00204 DNA gyrase B J171_01861 PF00986 DNA gyrase B subunit, carboxyl terminus J171_01863 PF06418 CTP synthase N-terminus J171_01863 PF00117 Glutamine amidotransferase class-I J171_01864 PF00793 DAHP synthetase I family J171_01866 PF00113 Enolase, C-terminal TIM barrel domain J171_01866 PF03952 Enolase, N-terminal domain J171_01867 PF04977 Septum formation initiator J171_01868 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J171_01869 PF02542 YgbB family J171_01870 PF01142 tRNA pseudouridine synthase D (TruD) J171_01871 PF01713 Smr domain J171_01872 PF01975 Survival protein SurE J171_01874 PF09335 SNARE associated Golgi protein J171_01875 PF01476 LysM domain J171_01875 PF01551 Peptidase family M23 J171_01877 PF04430 Protein of unknown function (DUF498/DUF598) J171_01878 PF01985 CRS1 / YhbY (CRM) domain J171_01879 PF01728 FtsJ-like methyltransferase J171_01880 PF00004 ATPase family associated with various cellular activities (AAA) J171_01880 PF01434 Peptidase family M41 J171_01880 PF06480 FtsH Extracellular J171_01880 PF17862 AAA+ lid domain J171_01881 PF00809 Pterin binding enzyme J171_01883 PF17209 Hfq protein J171_01884 PF13167 GTP-binding GTPase N-terminal J171_01884 PF01926 50S ribosome-binding GTPase J171_01884 PF16360 GTP-binding GTPase Middle Region J171_01885 PF02464 Competence-damaged protein J171_01886 PF03109 ABC1 family J171_01887 PF00717 Peptidase S24-like J171_01887 PF01726 LexA DNA binding domain J171_01888 PF00154 recA bacterial DNA recombination protein J171_01889 PF02631 RecX family J171_01890 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J171_01890 PF01411 tRNA synthetases class II (A) J171_01890 PF02272 DHHA1 domain J171_01891 PF02599 Global regulator protein family J171_01893 PF08447 PAS fold J171_01893 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_01893 PF13426 PAS domain J171_01894 PF02678 Pirin J171_01894 PF17954 Quercetinase C-terminal cupin domain J171_01895 PF03466 LysR substrate binding domain J171_01895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_01900 PF08543 Phosphomethylpyrimidine kinase J171_01900 PF02581 Thiamine monophosphate synthase J171_01903 PF13638 PIN domain J171_01903 PF02562 PhoH-like protein J171_01904 PF00578 AhpC/TSA family J171_01907 PF00701 Dihydrodipicolinate synthetase family J171_01909 PF11953 Domain of unknown function (DUF3470) J171_01909 PF00037 4Fe-4S binding domain J171_01910 PF05035 2-keto-3-deoxy-galactonokinase J171_01911 PF08450 SMP-30/Gluconolactonase/LRE-like region J171_01912 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J171_01912 PF13378 Enolase C-terminal domain-like J171_01913 PF01081 KDPG and KHG aldolase J171_01915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_01915 PF03466 LysR substrate binding domain J171_01918 PF00942 Cellulose binding domain J171_01918 PF03442 Carbohydrate binding domain X2 J171_01921 PF01055 Glycosyl hydrolases family 31 J171_01921 PF17137 Domain of unknown function (DUF5110) J171_01921 PF16338 Domain of unknown function (DUF4968) J171_01923 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J171_01923 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J171_01925 PF00083 Sugar (and other) transporter J171_01928 PF01520 N-acetylmuramoyl-L-alanine amidase J171_01929 PF02649 Type I GTP cyclohydrolase folE2 J171_01933 PF01743 Poly A polymerase head domain J171_01933 PF12626 Polymerase A arginine-rich C-terminus J171_01933 PF12627 Probable RNA and SrmB- binding site of polymerase A J171_01934 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J171_01935 PF02548 Ketopantoate hydroxymethyltransferase J171_01936 PF02569 Pantoate-beta-alanine ligase J171_01937 PF02261 Aspartate decarboxylase J171_01938 PF00342 Phosphoglucose isomerase J171_01942 PF00933 Glycosyl hydrolase family 3 N terminal domain J171_01942 PF14310 Fibronectin type III-like domain J171_01942 PF01915 Glycosyl hydrolase family 3 C-terminal domain J171_01943 PF00474 Sodium:solute symporter family J171_01944 PF00563 EAL domain J171_01944 PF01590 GAF domain J171_01944 PF00990 Diguanylate cyclase, GGDEF domain J171_01944 PF00360 Phytochrome region J171_01945 PF00150 Cellulase (glycosyl hydrolase family 5) J171_01945 PF02013 Cellulose or protein binding domain J171_01946 PF00072 Response regulator receiver domain J171_01948 PF04551 GcpE protein J171_01949 PF01569 PAP2 superfamily J171_01950 PF07690 Major Facilitator Superfamily J171_01951 PF01177 Asp/Glu/Hydantoin racemase J171_01952 PF00892 EamA-like transporter family J171_01953 PF01565 FAD binding domain J171_01953 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J171_01954 PF01180 Dihydroorotate dehydrogenase J171_01957 PF00171 Aldehyde dehydrogenase family J171_01960 PF00535 Glycosyl transferase family 2 J171_01961 PF14883 Hypothetical glycosyl hydrolase family 13 J171_01961 PF01522 Polysaccharide deacetylase J171_01963 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB J171_01963 PF17287 POTRA domain J171_01963 PF08479 POTRA domain, ShlB-type J171_01964 PF13332 Hemagglutinin repeat J171_01964 PF04829 Pre-toxin domain with VENN motif J171_01964 PF05594 Haemagluttinin repeat J171_01965 PF13332 Hemagglutinin repeat J171_01965 PF05594 Haemagluttinin repeat J171_01965 PF04829 Pre-toxin domain with VENN motif J171_01967 PF05594 Haemagluttinin repeat J171_01967 PF13018 Extended Signal Peptide of Type V secretion system J171_01967 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain J171_01967 PF05860 haemagglutination activity domain J171_01967 PF13332 Hemagglutinin repeat J171_01969 PF03447 Homoserine dehydrogenase, NAD binding domain J171_01969 PF00742 Homoserine dehydrogenase J171_01969 PF13840 ACT domain J171_01969 PF01842 ACT domain J171_01969 PF00696 Amino acid kinase family J171_01970 PF00288 GHMP kinases N terminal domain J171_01970 PF08544 GHMP kinases C terminal J171_01972 PF00291 Pyridoxal-phosphate dependent enzyme J171_01972 PF14821 Threonine synthase N terminus J171_01974 PF13545 Crp-like helix-turn-helix domain J171_01974 PF00027 Cyclic nucleotide-binding domain J171_01975 PF03129 Anticodon binding domain J171_01975 PF13393 Histidyl-tRNA synthetase J171_01977 PF01634 ATP phosphoribosyltransferase J171_01977 PF08029 HisG, C-terminal domain J171_01978 PF00815 Histidinol dehydrogenase J171_01979 PF00155 Aminotransferase class I and II J171_01980 PF00475 Imidazoleglycerol-phosphate dehydratase J171_01981 PF00117 Glutamine amidotransferase class-I J171_01982 PF00977 Histidine biosynthesis protein J171_01983 PF00977 Histidine biosynthesis protein J171_01984 PF01502 Phosphoribosyl-AMP cyclohydrolase J171_01984 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J171_01988 PF03079 ARD/ARD' family J171_01989 PF00596 Class II Aldolase and Adducin N-terminal domain J171_01990 PF13520 Amino acid permease J171_01991 PF13520 Amino acid permease J171_01993 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J171_01993 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J171_01993 PF01842 ACT domain J171_01994 PF02913 FAD linked oxidases, C-terminal domain J171_01994 PF01565 FAD binding domain J171_01998 PF08207 Elongation factor P (EF-P) KOW-like domain J171_01998 PF09285 Elongation factor P, C-terminal J171_01998 PF01132 Elongation factor P (EF-P) OB domain J171_01999 PF00106 short chain dehydrogenase J171_02000 PF00682 HMGL-like J171_02002 PF00378 Enoyl-CoA hydratase/isomerase J171_02004 PF07664 Ferrous iron transport protein B C terminus J171_02004 PF02421 Ferrous iron transport protein B J171_02004 PF07670 Nucleoside recognition J171_02007 PF00155 Aminotransferase class I and II J171_02008 PF03475 3-alpha domain J171_02008 PF03473 MOSC domain J171_02009 PF05173 Dihydrodipicolinate reductase, C-terminus J171_02009 PF01113 Dihydrodipicolinate reductase, N-terminus J171_02010 PF00117 Glutamine amidotransferase class-I J171_02010 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J171_02012 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J171_02012 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J171_02012 PF02142 MGS-like domain J171_02013 PF03449 Transcription elongation factor, N-terminal J171_02013 PF01272 Transcription elongation factor, GreA/GreB, C-term J171_02015 PF01368 DHH family J171_02015 PF02272 DHHA1 domain J171_02015 PF17768 RecJ OB domain J171_02023 PF04397 LytTr DNA-binding domain J171_02023 PF00072 Response regulator receiver domain J171_02024 PF03462 PCRF domain J171_02024 PF00472 RF-1 domain J171_02025 PF00152 tRNA synthetases class II (D, K and N) J171_02025 PF01336 OB-fold nucleic acid binding domain J171_02026 PF00072 Response regulator receiver domain J171_02027 PF01627 Hpt domain J171_02027 PF00072 Response regulator receiver domain J171_02027 PF00512 His Kinase A (phospho-acceptor) domain J171_02027 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_02028 PF00378 Enoyl-CoA hydratase/isomerase J171_02029 PF13193 AMP-binding enzyme C-terminal domain J171_02029 PF00501 AMP-binding enzyme J171_02031 PF00330 Aconitase family (aconitate hydratase) J171_02031 PF00694 Aconitase C-terminal domain J171_02034 PF06434 Aconitate hydratase 2 N-terminus J171_02034 PF00330 Aconitase family (aconitate hydratase) J171_02034 PF11791 Aconitate B N-terminal domain J171_02035 PF00561 alpha/beta hydrolase fold J171_02036 PF00563 EAL domain J171_02036 PF00990 Diguanylate cyclase, GGDEF domain J171_02036 PF03707 Bacterial signalling protein N terminal repeat J171_02037 PF00072 Response regulator receiver domain J171_02037 PF01339 CheB methylesterase J171_02038 PF03975 CheD chemotactic sensory transduction J171_02039 PF01739 CheR methyltransferase, SAM binding domain J171_02039 PF03705 CheR methyltransferase, all-alpha domain J171_02040 PF02203 Tar ligand binding domain homologue J171_02040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_02040 PF00672 HAMP domain J171_02041 PF02203 Tar ligand binding domain homologue J171_02041 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_02041 PF00672 HAMP domain J171_02042 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_02042 PF00672 HAMP domain J171_02042 PF02203 Tar ligand binding domain homologue J171_02043 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_02043 PF00672 HAMP domain J171_02043 PF02203 Tar ligand binding domain homologue J171_02044 PF02203 Tar ligand binding domain homologue J171_02044 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_02044 PF00672 HAMP domain J171_02045 PF00672 HAMP domain J171_02045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_02046 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_02046 PF02203 Tar ligand binding domain homologue J171_02046 PF00672 HAMP domain J171_02048 PF00672 HAMP domain J171_02048 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_02048 PF02203 Tar ligand binding domain homologue J171_02049 PF00672 HAMP domain J171_02049 PF17200 Single Cache domain 2 J171_02049 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_02049 PF17200 Single Cache domain 2 J171_02049 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_02049 PF00672 HAMP domain J171_02051 PF02203 Tar ligand binding domain homologue J171_02051 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_02051 PF00672 HAMP domain J171_02052 PF09078 CheY binding J171_02052 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_02052 PF01627 Hpt domain J171_02052 PF01584 CheW-like domain J171_02052 PF02895 Signal transducing histidine kinase, homodimeric domain J171_02053 PF00072 Response regulator receiver domain J171_02055 PF01584 CheW-like domain J171_02056 PF13614 AAA domain J171_02057 PF00691 OmpA family J171_02057 PF13677 Membrane MotB of proton-channel complex MotA/MotB J171_02058 PF01618 MotA/TolQ/ExbB proton channel family J171_02061 PF00069 Protein kinase domain J171_02061 PF03793 PASTA domain J171_02071 PF01527 Transposase J171_02077 PF04055 Radical SAM superfamily J171_02077 PF13186 Iron-sulfur cluster-binding domain J171_02080 PF07194 P2 response regulator binding domain J171_02080 PF01584 CheW-like domain J171_02080 PF02895 Signal transducing histidine kinase, homodimeric domain J171_02080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_02080 PF01627 Hpt domain J171_02081 PF04344 Chemotaxis phosphatase, CheZ J171_02082 PF00072 Response regulator receiver domain J171_02083 PF04542 Sigma-70 region 2 J171_02083 PF04539 Sigma-70 region 3 J171_02083 PF04545 Sigma-70, region 4 J171_02084 PF10609 NUBPL iron-transfer P-loop NTPase J171_02085 PF00448 SRP54-type protein, GTPase domain J171_02086 PF00771 FHIPEP family J171_02087 PF01312 FlhB HrpN YscU SpaS Family J171_02088 PF00563 EAL domain J171_02088 PF03707 Bacterial signalling protein N terminal repeat J171_02088 PF00990 Diguanylate cyclase, GGDEF domain J171_02089 PF00563 EAL domain J171_02089 PF00990 Diguanylate cyclase, GGDEF domain J171_02089 PF03707 Bacterial signalling protein N terminal repeat J171_02089 PF13188 PAS domain J171_02090 PF13188 PAS domain J171_02090 PF00563 EAL domain J171_02090 PF03707 Bacterial signalling protein N terminal repeat J171_02090 PF00990 Diguanylate cyclase, GGDEF domain J171_02091 PF01311 Bacterial export proteins, family 1 J171_02092 PF01313 Bacterial export proteins, family 3 J171_02094 PF00813 FliP family J171_02095 PF04347 Flagellar biosynthesis protein, FliO J171_02096 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J171_02097 PF02154 Flagellar motor switch protein FliM J171_02097 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J171_02101 PF18269 T3SS EscN ATPase C-terminal domain J171_02101 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J171_02103 PF14842 FliG N-terminal domain J171_02103 PF14841 FliG middle domain J171_02103 PF01706 FliG C-terminal domain J171_02104 PF08345 Flagellar M-ring protein C-terminal J171_02104 PF01514 Secretory protein of YscJ/FliF family J171_02105 PF02049 Flagellar hook-basal body complex protein FliE J171_02106 PF00535 Glycosyl transferase family 2 J171_02106 PF00534 Glycosyl transferases group 1 J171_02114 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J171_02114 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J171_02116 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J171_02117 PF00158 Sigma-54 interaction domain J171_02117 PF00072 Response regulator receiver domain J171_02117 PF02954 Bacterial regulatory protein, Fis family J171_02118 PF00072 Response regulator receiver domain J171_02118 PF01339 CheB methylesterase J171_02119 PF04963 Sigma-54 factor, core binding domain J171_02119 PF00309 Sigma-54 factor, Activator interacting domain (AID) J171_02119 PF04552 Sigma-54, DNA binding domain J171_02120 PF00072 Response regulator receiver domain J171_02120 PF00196 Bacterial regulatory proteins, luxR family J171_02123 PF02561 Flagellar protein FliS J171_02124 PF07196 Flagellin hook IN motif J171_02124 PF07195 Flagellar hook-associated protein 2 C-terminus J171_02124 PF02465 Flagellar hook-associated protein 2 N-terminus J171_02125 PF00700 Bacterial flagellin C-terminal helical region J171_02125 PF00669 Bacterial flagellin N-terminal helical region J171_02126 PF00669 Bacterial flagellin N-terminal helical region J171_02126 PF00700 Bacterial flagellin C-terminal helical region J171_02127 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J171_02127 PF07196 Flagellin hook IN motif J171_02128 PF10135 Rod binding protein J171_02128 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J171_02129 PF02119 Flagellar P-ring protein J171_02130 PF02107 Flagellar L-ring protein J171_02131 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J171_02131 PF00460 Flagella basal body rod protein J171_02132 PF00460 Flagella basal body rod protein J171_02132 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J171_02133 PF00460 Flagella basal body rod protein J171_02133 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J171_02133 PF07559 Flagellar basal body protein FlaE J171_02134 PF03963 Flagellar hook capping protein - N-terminal region J171_02135 PF00460 Flagella basal body rod protein J171_02135 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J171_02137 PF00072 Response regulator receiver domain J171_02137 PF01584 CheW-like domain J171_02141 PF00512 His Kinase A (phospho-acceptor) domain J171_02141 PF00989 PAS fold J171_02141 PF13188 PAS domain J171_02141 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_02141 PF13426 PAS domain J171_02142 PF00563 EAL domain J171_02142 PF00990 Diguanylate cyclase, GGDEF domain J171_02142 PF03707 Bacterial signalling protein N terminal repeat J171_02143 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_02143 PF07730 Histidine kinase J171_02144 PF03707 Bacterial signalling protein N terminal repeat J171_02144 PF00990 Diguanylate cyclase, GGDEF domain J171_02144 PF00563 EAL domain J171_02146 PF12729 Four helix bundle sensory module for signal transduction J171_02146 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_02146 PF00672 HAMP domain J171_02147 PF04356 Protein of unknown function (DUF489) J171_02149 PF00293 NUDIX domain J171_02150 PF02617 ATP-dependent Clp protease adaptor protein ClpS J171_02151 PF07724 AAA domain (Cdc48 subfamily) J171_02151 PF00004 ATPase family associated with various cellular activities (AAA) J171_02151 PF02861 Clp amino terminal domain, pathogenicity island component J171_02151 PF17871 AAA lid domain J171_02151 PF10431 C-terminal, D2-small domain, of ClpB protein J171_02152 PF01176 Translation initiation factor 1A / IF-1 J171_02153 PF03588 Leucyl/phenylalanyl-tRNA protein transferase J171_02155 PF07992 Pyridine nucleotide-disulphide oxidoreductase J171_02156 PF17854 FtsK alpha domain J171_02156 PF09397 Ftsk gamma domain J171_02156 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J171_02156 PF01580 FtsK/SpoIIIE family J171_02158 PF03548 Outer membrane lipoprotein carrier protein LolA J171_02160 PF12002 MgsA AAA+ ATPase C terminal J171_02160 PF00004 ATPase family associated with various cellular activities (AAA) J171_02160 PF16193 AAA C-terminal domain J171_02162 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J171_02164 PF00108 Thiolase, N-terminal domain J171_02164 PF02803 Thiolase, C-terminal domain J171_02165 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J171_02165 PF00378 Enoyl-CoA hydratase/isomerase J171_02165 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J171_02167 PF00334 Nucleoside diphosphate kinase J171_02168 PF04055 Radical SAM superfamily J171_02170 PF13464 Domain of unknown function (DUF4115) J171_02172 PF01011 PQQ enzyme repeat J171_02172 PF13360 PQQ-like domain J171_02173 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J171_02173 PF01926 50S ribosome-binding GTPase J171_02174 PF03453 MoeA N-terminal region (domain I and II) J171_02174 PF03454 MoeA C-terminal region (domain IV) J171_02174 PF00994 Probable molybdopterin binding domain J171_02175 PF00899 ThiF family J171_02180 PF08240 Alcohol dehydrogenase GroES-like domain J171_02180 PF13823 Alcohol dehydrogenase GroES-associated J171_02180 PF00107 Zinc-binding dehydrogenase J171_02182 PF03372 Endonuclease/Exonuclease/phosphatase family J171_02184 PF03454 MoeA C-terminal region (domain IV) J171_02184 PF03453 MoeA N-terminal region (domain I and II) J171_02184 PF00994 Probable molybdopterin binding domain J171_02185 PF12804 MobA-like NTP transferase domain J171_02187 PF00561 alpha/beta hydrolase fold J171_02188 PF01566 Natural resistance-associated macrophage protein J171_02189 PF02742 Iron dependent repressor, metal binding and dimerisation domain J171_02189 PF01325 Iron dependent repressor, N-terminal DNA binding domain J171_02190 PF14437 MafB19-like deaminase J171_02191 PF00929 Exonuclease J171_02192 PF05552 Conserved TM helix J171_02192 PF00924 Mechanosensitive ion channel J171_02193 PF00391 PEP-utilising enzyme, mobile domain J171_02193 PF02896 PEP-utilising enzyme, TIM barrel domain J171_02193 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J171_02194 PF03618 Kinase/pyrophosphorylase J171_02198 PF01066 CDP-alcohol phosphatidyltransferase J171_02200 PF00561 alpha/beta hydrolase fold J171_02203 PF01266 FAD dependent oxidoreductase J171_02203 PF00355 Rieske [2Fe-2S] domain J171_02205 PF09371 Tex-like protein N-terminal domain J171_02205 PF16921 Tex protein YqgF-like domain J171_02205 PF17674 HHH domain J171_02205 PF00575 S1 RNA binding domain J171_02206 PF00072 Response regulator receiver domain J171_02206 PF00512 His Kinase A (phospho-acceptor) domain J171_02206 PF09308 LuxQ, periplasmic J171_02206 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_02214 PF00034 Cytochrome c J171_02216 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J171_02217 PF00873 AcrB/AcrD/AcrF family J171_02218 PF00873 AcrB/AcrD/AcrF family J171_02219 PF01081 KDPG and KHG aldolase J171_02220 PF00920 Dehydratase family J171_02221 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J171_02222 PF02685 Glucokinase J171_02223 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J171_02223 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J171_02224 PF00005 ABC transporter J171_02224 PF17912 MalK OB fold domain J171_02227 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J171_02228 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J171_02229 PF02910 Fumarate reductase flavoprotein C-term J171_02229 PF00890 FAD binding domain J171_02231 PF13085 2Fe-2S iron-sulfur cluster binding domain J171_02232 PF03937 Flavinator of succinate dehydrogenase J171_02234 PF02687 FtsX-like permease family J171_02234 PF12704 MacB-like periplasmic core domain J171_02235 PF00005 ABC transporter J171_02237 PF00753 Metallo-beta-lactamase superfamily J171_02237 PF03772 Competence protein J171_02238 PF01618 MotA/TolQ/ExbB proton channel family J171_02240 PF00005 ABC transporter J171_02240 PF00664 ABC transporter transmembrane region J171_02241 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J171_02242 PF02348 Cytidylyltransferase J171_02243 PF01451 Low molecular weight phosphotyrosine protein phosphatase J171_02245 PF02151 UvrB/uvrC motif J171_02245 PF08459 UvrC Helix-hairpin-helix N-terminal J171_02245 PF01541 GIY-YIG catalytic domain J171_02246 PF01066 CDP-alcohol phosphatidyltransferase J171_02250 PF00501 AMP-binding enzyme J171_02250 PF13193 AMP-binding enzyme C-terminal domain J171_02250 PF00668 Condensation domain J171_02250 PF00550 Phosphopantetheine attachment site J171_02251 PF00501 AMP-binding enzyme J171_02251 PF00668 Condensation domain J171_02251 PF13193 AMP-binding enzyme C-terminal domain J171_02251 PF00550 Phosphopantetheine attachment site J171_02251 PF00975 Thioesterase domain J171_02253 PF01527 Transposase J171_02255 PF01527 Transposase J171_02256 PF00589 Phage integrase family J171_02258 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J171_02258 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J171_02258 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J171_02260 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J171_02263 PF00196 Bacterial regulatory proteins, luxR family J171_02263 PF00072 Response regulator receiver domain J171_02264 PF00575 S1 RNA binding domain J171_02264 PF10150 Ribonuclease E/G family J171_02264 PF12111 Polyribonucleotide phosphorylase C terminal J171_02265 PF00849 RNA pseudouridylate synthase J171_02265 PF01479 S4 domain J171_02266 PF11737 Protein of unknown function (DUF3300) J171_02267 PF02535 ZIP Zinc transporter J171_02269 PF01329 Pterin 4 alpha carbinolamine dehydratase J171_02270 PF01106 NifU-like domain J171_02281 PF00106 short chain dehydrogenase J171_02286 PF01527 Transposase J171_02287 PF01494 FAD binding domain J171_02288 PF09335 SNARE associated Golgi protein J171_02290 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J171_02291 PF07995 Glucose / Sorbosone dehydrogenase J171_02293 PF00144 Beta-lactamase J171_02294 PF04397 LytTr DNA-binding domain J171_02294 PF00072 Response regulator receiver domain J171_02295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_02295 PF07694 5TMR of 5TMR-LYT J171_02295 PF06580 Histidine kinase J171_02297 PF03797 Autotransporter beta-domain J171_02297 PF00082 Subtilase family J171_02298 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J171_02299 PF00873 AcrB/AcrD/AcrF family J171_02301 PF00512 His Kinase A (phospho-acceptor) domain J171_02301 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_02301 PF13426 PAS domain J171_02301 PF08448 PAS fold J171_02301 PF00072 Response regulator receiver domain J171_02302 PF00196 Bacterial regulatory proteins, luxR family J171_02302 PF00072 Response regulator receiver domain J171_02303 PF12951 Passenger-associated-transport-repeat J171_02303 PF12951 Passenger-associated-transport-repeat J171_02304 PF00563 EAL domain J171_02304 PF00990 Diguanylate cyclase, GGDEF domain J171_02304 PF08448 PAS fold J171_02304 PF08447 PAS fold J171_02307 PF05974 Domain of unknown function (DUF892) J171_02309 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J171_02311 PF10414 Sirohaem synthase dimerisation region J171_02311 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J171_02311 PF14824 Sirohaem biosynthesis protein central J171_02314 PF05977 Transmembrane secretion effector J171_02315 PF07969 Amidohydrolase family J171_02317 PF00857 Isochorismatase family J171_02320 PF00072 Response regulator receiver domain J171_02320 PF00196 Bacterial regulatory proteins, luxR family J171_02323 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_02323 PF03466 LysR substrate binding domain J171_02324 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus J171_02324 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J171_02324 PF00361 Proton-conducting membrane transporter J171_02325 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) J171_02327 PF01527 Transposase J171_02328 PF01381 Helix-turn-helix J171_02329 PF05284 Protein of unknown function (DUF736) J171_02330 PF04002 RadC-like JAB domain J171_02335 PF00589 Phage integrase family J171_02335 PF13356 Arm DNA-binding domain J171_02338 PF00593 TonB dependent receptor J171_02338 PF07715 TonB-dependent Receptor Plug Domain J171_02342 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin J171_02347 PF07715 TonB-dependent Receptor Plug Domain J171_02347 PF00593 TonB dependent receptor J171_02350 PF10947 Protein of unknown function (DUF2628) J171_02352 PF00722 Glycosyl hydrolases family 16 J171_02352 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) J171_02357 PF03412 Peptidase C39 family J171_02357 PF00005 ABC transporter J171_02357 PF00664 ABC transporter transmembrane region J171_02359 PF13614 AAA domain J171_02367 PF01131 DNA topoisomerase J171_02367 PF01751 Toprim domain J171_02368 PF00145 C-5 cytosine-specific DNA methylase J171_02380 PF06250 YhcG PDDEXK nuclease domain J171_02380 PF17761 DUF1016 N-terminal domain J171_02381 PF01527 Transposase J171_02383 PF00892 EamA-like transporter family J171_02384 PF00892 EamA-like transporter family J171_02386 PF02525 Flavodoxin-like fold J171_02387 PF02798 Glutathione S-transferase, N-terminal domain J171_02387 PF00043 Glutathione S-transferase, C-terminal domain J171_02388 PF05544 Proline racemase J171_02389 PF03358 NADPH-dependent FMN reductase J171_02391 PF07690 Major Facilitator Superfamily J171_02392 PF12833 Helix-turn-helix domain J171_02392 PF02311 AraC-like ligand binding domain J171_02422 PF13361 UvrD-like helicase C-terminal domain J171_02422 PF12462 DNA helicase IV / RNA helicase N terminal J171_02422 PF00580 UvrD/REP helicase N-terminal domain J171_02437 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_02437 PF03466 LysR substrate binding domain J171_02438 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J171_02438 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J171_02439 PF03401 Tripartite tricarboxylate transporter family receptor J171_02443 PF04002 RadC-like JAB domain J171_02450 PF00589 Phage integrase family J171_02450 PF13356 Arm DNA-binding domain J171_02451 PF02540 NAD synthase J171_02451 PF00958 GMP synthase C terminal domain J171_02451 PF00117 Glutamine amidotransferase class-I J171_02452 PF00478 IMP dehydrogenase / GMP reductase domain J171_02452 PF00571 CBS domain J171_02453 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J171_02453 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J171_02455 PF00999 Sodium/hydrogen exchanger family J171_02455 PF02254 TrkA-N domain J171_02456 PF00483 Nucleotidyl transferase J171_02457 PF02719 Polysaccharide biosynthesis protein J171_02458 PF00953 Glycosyl transferase family 4 J171_02459 PF18073 Rubredoxin metal binding domain J171_02461 PF00216 Bacterial DNA-binding protein J171_02462 PF00575 S1 RNA binding domain J171_02463 PF02224 Cytidylate kinase J171_02464 PF00444 Ribosomal protein L36 J171_02467 PF04371 Porphyromonas-type peptidyl-arginine deiminase J171_02468 PF00795 Carbon-nitrogen hydrolase J171_02473 PF00528 Binding-protein-dependent transport system inner membrane component J171_02474 PF00528 Binding-protein-dependent transport system inner membrane component J171_02478 PF00356 Bacterial regulatory proteins, lacI family J171_02480 PF03795 YCII-related domain J171_02481 PF02616 Segregation and condensation protein ScpA J171_02482 PF04079 Segregation and condensation complex subunit ScpB J171_02483 PF01479 S4 domain J171_02483 PF00849 RNA pseudouridylate synthase J171_02486 PF00795 Carbon-nitrogen hydrolase J171_02487 PF00155 Aminotransferase class I and II J171_02488 PF00005 ABC transporter J171_02489 PF03379 CcmB protein J171_02490 PF01578 Cytochrome C assembly protein J171_02492 PF03100 CcmE J171_02493 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J171_02493 PF01578 Cytochrome C assembly protein J171_02494 PF08534 Redoxin J171_02495 PF03918 Cytochrome C biogenesis protein J171_02497 PF00561 alpha/beta hydrolase fold J171_02498 PF00313 'Cold-shock' DNA-binding domain J171_02499 PF00005 ABC transporter J171_02499 PF00664 ABC transporter transmembrane region J171_02500 PF00664 ABC transporter transmembrane region J171_02500 PF00005 ABC transporter J171_02501 PF01654 Cytochrome bd terminal oxidase subunit I J171_02502 PF02322 Cytochrome bd terminal oxidase subunit II J171_02506 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J171_02506 PF02129 X-Pro dipeptidyl-peptidase (S15 family) J171_02507 PF00171 Aldehyde dehydrogenase family J171_02508 PF01472 PUA domain J171_02508 PF00696 Amino acid kinase family J171_02510 PF00206 Lyase J171_02511 PF01118 Semialdehyde dehydrogenase, NAD binding domain J171_02513 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase J171_02513 PF00696 Amino acid kinase family J171_02516 PF00764 Arginosuccinate synthase J171_02517 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J171_02517 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J171_02519 PF09190 DALR domain J171_02519 PF01406 tRNA synthetases class I (C) catalytic domain J171_02520 PF02657 Fe-S metabolism associated domain J171_02522 PF01258 Prokaryotic dksA/traR C4-type zinc finger J171_02523 PF01809 Putative membrane protein insertion efficiency factor J171_02524 PF01979 Amidohydrolase family J171_02525 PF08460 Bacterial SH3 domain J171_02525 PF01551 Peptidase family M23 J171_02528 PF06751 Ethanolamine ammonia lyase large subunit (EutB) J171_02529 PF05985 Ethanolamine ammonia-lyase light chain (EutC) J171_02531 PF00753 Metallo-beta-lactamase superfamily J171_02535 PF01527 Transposase J171_02538 PF00295 Glycosyl hydrolases family 28 J171_02540 PF13419 Haloacid dehalogenase-like hydrolase J171_02542 PF01979 Amidohydrolase family J171_02544 PF01132 Elongation factor P (EF-P) OB domain J171_02544 PF08207 Elongation factor P (EF-P) KOW-like domain J171_02544 PF09285 Elongation factor P, C-terminal J171_02545 PF04055 Radical SAM superfamily J171_02546 PF13188 PAS domain J171_02546 PF03707 Bacterial signalling protein N terminal repeat J171_02546 PF00990 Diguanylate cyclase, GGDEF domain J171_02546 PF00563 EAL domain J171_02548 PF00588 SpoU rRNA Methylase family J171_02549 PF00459 Inositol monophosphatase family J171_02550 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J171_02550 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J171_02551 PF00545 ribonuclease J171_02554 PF03880 DbpA RNA binding domain J171_02554 PF00271 Helicase conserved C-terminal domain J171_02554 PF00270 DEAD/DEAH box helicase J171_02555 PF00156 Phosphoribosyl transferase domain J171_02556 PF02696 Uncharacterized ACR, YdiU/UPF0061 family J171_02557 PF00135 Carboxylesterase family J171_02558 PF14497 Glutathione S-transferase, C-terminal domain J171_02558 PF02798 Glutathione S-transferase, N-terminal domain J171_02559 PF00313 'Cold-shock' DNA-binding domain J171_02560 PF07152 YaeQ protein J171_02562 PF00563 EAL domain J171_02562 PF00990 Diguanylate cyclase, GGDEF domain J171_02562 PF00072 Response regulator receiver domain J171_02563 PF01435 Peptidase family M48 J171_02564 PF00749 tRNA synthetases class I (E and Q), catalytic domain J171_02565 PF00106 short chain dehydrogenase J171_02566 PF05233 PHB accumulation regulatory domain J171_02566 PF07879 PHB/PHA accumulation regulator DNA-binding domain J171_02569 PF01119 DNA mismatch repair protein, C-terminal domain J171_02569 PF08676 MutL C terminal dimerisation domain J171_02570 PF11741 AMIN domain J171_02570 PF01520 N-acetylmuramoyl-L-alanine amidase J171_02571 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J171_02572 PF03853 YjeF-related protein N-terminus J171_02572 PF01256 Carbohydrate kinase J171_02573 PF08331 Domain of unknown function (DUF1730) J171_02574 PF02601 Exonuclease VII, large subunit J171_02574 PF13742 OB-fold nucleic acid binding domain J171_02576 PF03781 Sulfatase-modifying factor enzyme 1 J171_02577 PF01612 3'-5' exonuclease J171_02577 PF00570 HRDC domain J171_02579 PF01068 ATP dependent DNA ligase domain J171_02579 PF04679 ATP dependent DNA ligase C terminal region J171_02579 PF13298 DNA polymerase Ligase (LigD) J171_02583 PF00589 Phage integrase family J171_02587 PF05598 Transposase domain (DUF772) J171_02589 PF01527 Transposase J171_02593 PF01619 Proline dehydrogenase J171_02593 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J171_02593 PF00171 Aldehyde dehydrogenase family J171_02593 PF14850 DNA-binding domain of Proline dehydrogenase J171_02595 PF01527 Transposase J171_02597 PF13333 Integrase core domain J171_02597 PF13276 HTH-like domain J171_02597 PF00665 Integrase core domain J171_02599 PF00239 Resolvase, N terminal domain J171_02599 PF02796 Helix-turn-helix domain of resolvase J171_02602 PF02384 N-6 DNA Methylase J171_02603 PF09572 XamI restriction endonuclease J171_02615 PF01584 CheW-like domain J171_02616 PF12729 Four helix bundle sensory module for signal transduction J171_02616 PF00672 HAMP domain J171_02616 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_02617 PF02245 Methylpurine-DNA glycosylase (MPG) J171_02618 PF00271 Helicase conserved C-terminal domain J171_02618 PF08494 DEAD/H associated J171_02618 PF00270 DEAD/DEAH box helicase J171_02621 PF04386 Stringent starvation protein B J171_02622 PF02798 Glutathione S-transferase, N-terminal domain J171_02622 PF00043 Glutathione S-transferase, C-terminal domain J171_02623 PF02167 Cytochrome C1 family J171_02624 PF00033 Cytochrome b/b6/petB J171_02624 PF00032 Cytochrome b(C-terminal)/b6/petD J171_02625 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal J171_02625 PF00355 Rieske [2Fe-2S] domain J171_02626 PF01464 Transglycosylase SLT domain J171_02629 PF00919 Uncharacterized protein family UPF0004 J171_02629 PF01938 TRAM domain J171_02629 PF04055 Radical SAM superfamily J171_02630 PF02562 PhoH-like protein J171_02632 PF02130 Uncharacterized protein family UPF0054 J171_02634 PF00571 CBS domain J171_02634 PF03471 Transporter associated domain J171_02637 PF00171 Aldehyde dehydrogenase family J171_02638 PF00528 Binding-protein-dependent transport system inner membrane component J171_02639 PF00528 Binding-protein-dependent transport system inner membrane component J171_02640 PF08402 TOBE domain J171_02640 PF00005 ABC transporter J171_02641 PF02321 Outer membrane efflux protein J171_02642 PF07690 Major Facilitator Superfamily J171_02643 PF13533 Biotin-lipoyl like J171_02644 PF13416 Bacterial extracellular solute-binding protein J171_02645 PF00202 Aminotransferase class-III J171_02646 PF00120 Glutamine synthetase, catalytic domain J171_02647 PF07722 Peptidase C26 J171_02648 PF00120 Glutamine synthetase, catalytic domain J171_02649 PF01266 FAD dependent oxidoreductase J171_02650 PF00990 Diguanylate cyclase, GGDEF domain J171_02650 PF00072 Response regulator receiver domain J171_02651 PF01814 Hemerythrin HHE cation binding domain J171_02652 PF00083 Sugar (and other) transporter J171_02652 PF07690 Major Facilitator Superfamily J171_02654 PF00384 Molybdopterin oxidoreductase J171_02655 PF02634 FdhD/NarQ family J171_02656 PF07690 Major Facilitator Superfamily J171_02657 PF00202 Aminotransferase class-III J171_02659 PF04286 Protein of unknown function (DUF445) J171_02660 PF00072 Response regulator receiver domain J171_02660 PF01627 Hpt domain J171_02660 PF00672 HAMP domain J171_02660 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J171_02660 PF00512 His Kinase A (phospho-acceptor) domain J171_02660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_02661 PF00072 Response regulator receiver domain J171_02662 PF07690 Major Facilitator Superfamily J171_02663 PF05088 Bacterial NAD-glutamate dehydrogenase J171_02665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J171_02665 PF00529 HlyD membrane-fusion protein of T1SS J171_02666 PF00873 AcrB/AcrD/AcrF family J171_02667 PF00356 Bacterial regulatory proteins, lacI family J171_02668 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J171_02668 PF00381 PTS HPr component phosphorylation site J171_02668 PF02896 PEP-utilising enzyme, TIM barrel domain J171_02668 PF00391 PEP-utilising enzyme, mobile domain J171_02668 PF05524 PEP-utilising enzyme, N-terminal J171_02669 PF00294 pfkB family carbohydrate kinase J171_02670 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J171_02678 PF07549 SecD/SecF GG Motif J171_02678 PF02355 Protein export membrane protein J171_02679 PF07549 SecD/SecF GG Motif J171_02679 PF13721 SecD export protein N-terminal TM region J171_02679 PF02355 Protein export membrane protein J171_02680 PF02699 Preprotein translocase subunit J171_02681 PF01702 Queuine tRNA-ribosyltransferase J171_02682 PF02547 Queuosine biosynthesis protein J171_02691 PF00759 Glycosyl hydrolase family 9 J171_02691 PF02927 Cellulase N-terminal ig-like domain J171_02693 PF00037 4Fe-4S binding domain J171_02696 PF01467 Cytidylyltransferase-like J171_02698 PF00183 Hsp90 protein J171_02698 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_02702 PF07715 TonB-dependent Receptor Plug Domain J171_02702 PF00593 TonB dependent receptor J171_02704 PF04616 Glycosyl hydrolases family 43 J171_02705 PF07532 Bacterial Ig-like domain (group 4) J171_02706 PF07715 TonB-dependent Receptor Plug Domain J171_02706 PF00593 TonB dependent receptor J171_02708 PF00082 Subtilase family J171_02708 PF09286 Pro-kumamolisin, activation domain J171_02714 PF13520 Amino acid permease J171_02717 PF00557 Metallopeptidase family M24 J171_02717 PF01321 Creatinase/Prolidase N-terminal domain J171_02718 PF00171 Aldehyde dehydrogenase family J171_02719 PF00701 Dihydrodipicolinate synthetase family J171_02720 PF07992 Pyridine nucleotide-disulphide oxidoreductase J171_02720 PF04324 BFD-like [2Fe-2S] binding domain J171_02722 PF01266 FAD dependent oxidoreductase J171_02723 PF05544 Proline racemase J171_02725 PF02881 SRP54-type protein, helical bundle domain J171_02725 PF00448 SRP54-type protein, GTPase domain J171_02726 PF00633 Helix-hairpin-helix motif J171_02726 PF14815 NUDIX domain J171_02726 PF10576 Iron-sulfur binding domain of endonuclease III J171_02726 PF00730 HhH-GPD superfamily base excision DNA repair protein J171_02727 PF04362 Bacterial Fe(2+) trafficking J171_02728 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_02728 PF13426 PAS domain J171_02728 PF00072 Response regulator receiver domain J171_02734 PF08212 Lipocalin-like domain J171_02736 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J171_02736 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J171_02736 PF12806 Acetyl-CoA dehydrogenase C-terminal like J171_02736 PF02770 Acyl-CoA dehydrogenase, middle domain J171_02738 PF02780 Transketolase, C-terminal domain J171_02738 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J171_02738 PF02779 Transketolase, pyrimidine binding domain J171_02742 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family J171_02743 PF16123 Hydroxyacylglutathione hydrolase C-terminus J171_02743 PF00753 Metallo-beta-lactamase superfamily J171_02744 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J171_02744 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J171_02747 PF03808 Glycosyl transferase WecB/TagA/CpsF family J171_02750 PF14667 Polysaccharide biosynthesis C-terminal domain J171_02752 PF00534 Glycosyl transferases group 1 J171_02752 PF13439 Glycosyltransferase Family 4 J171_02756 PF02397 Bacterial sugar transferase J171_02760 PF13411 MerR HTH family regulatory protein J171_02761 PF00216 Bacterial DNA-binding protein J171_02762 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J171_02762 PF03484 tRNA synthetase B5 domain J171_02762 PF03483 B3/4 domain J171_02762 PF01588 Putative tRNA binding domain J171_02762 PF03147 Ferredoxin-fold anticodon binding domain J171_02763 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J171_02763 PF01409 tRNA synthetases class II core domain (F) J171_02764 PF00453 Ribosomal protein L20 J171_02765 PF01632 Ribosomal protein L35 J171_02767 PF00707 Translation initiation factor IF-3, C-terminal domain J171_02767 PF05198 Translation initiation factor IF-3, N-terminal domain J171_02768 PF03129 Anticodon binding domain J171_02768 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J171_02768 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J171_02768 PF02824 TGS domain J171_02769 PF00356 Bacterial regulatory proteins, lacI family J171_02770 PF00128 Alpha amylase, catalytic domain J171_02770 PF00686 Starch binding domain J171_02771 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J171_02773 PF10566 Glycoside hydrolase 97 J171_02773 PF14508 Glycosyl-hydrolase 97 N-terminal J171_02773 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation J171_02777 PF00128 Alpha amylase, catalytic domain J171_02779 PF01527 Transposase J171_02788 PF03135 CagE, TrbE, VirB family, component of type IV transporter system J171_02789 PF05101 Type IV secretory pathway, VirB3-like protein J171_02791 PF01464 Transglycosylase SLT domain J171_02792 PF00437 Type II/IV secretion system protein J171_02793 PF03743 Bacterial conjugation TrbI-like protein J171_02797 PF02534 Type IV secretory system Conjugative DNA transfer J171_02800 PF17757 UvrB interaction domain J171_02800 PF12344 Ultra-violet resistance protein B J171_02800 PF02151 UvrB/uvrC motif J171_02800 PF04851 Type III restriction enzyme, res subunit J171_02800 PF00271 Helicase conserved C-terminal domain J171_02809 PF01527 Transposase J171_02818 PF01555 DNA methylase J171_02828 PF00182 Chitinase class I J171_02839 PF01527 Transposase J171_02840 PF07963 Prokaryotic N-terminal methylation motif J171_02840 PF00114 Pilin (bacterial filament) J171_02841 PF05567 Neisseria PilC beta-propeller domain J171_02844 PF06580 Histidine kinase J171_02844 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_02844 PF07694 5TMR of 5TMR-LYT J171_02845 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases J171_02845 PF03641 Possible lysine decarboxylase J171_02845 PF11892 Domain of unknown function (DUF3412) J171_02846 PF00593 TonB dependent receptor J171_02847 PF01914 MarC family integral membrane protein J171_02849 PF00462 Glutaredoxin J171_02850 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J171_02850 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J171_02851 PF02222 ATP-grasp domain J171_02851 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J171_02852 PF00731 AIR carboxylase J171_02854 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain J171_02854 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain J171_02856 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J171_02856 PF01138 3' exoribonuclease family, domain 1 J171_02856 PF03725 3' exoribonuclease family, domain 2 J171_02856 PF00575 S1 RNA binding domain J171_02856 PF00013 KH domain J171_02857 PF00312 Ribosomal protein S15 J171_02858 PF01509 TruB family pseudouridylate synthase (N terminal domain) J171_02858 PF09157 Pseudouridine synthase II TruB, C-terminal J171_02858 PF16198 tRNA pseudouridylate synthase B C-terminal domain J171_02859 PF02033 Ribosome-binding factor A J171_02860 PF08364 Bacterial translation initiation factor IF-2 associated region J171_02860 PF11987 Translation-initiation factor 2 J171_02860 PF04760 Translation initiation factor IF-2, N-terminal region J171_02860 PF00009 Elongation factor Tu GTP binding domain J171_02861 PF13184 NusA-like KH domain J171_02861 PF08529 NusA N-terminal domain J171_02861 PF00575 S1 RNA binding domain J171_02862 PF17384 RimP C-terminal SH3 domain J171_02862 PF02576 RimP N-terminal domain J171_02864 PF00361 Proton-conducting membrane transporter J171_02865 PF00361 Proton-conducting membrane transporter J171_02865 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus J171_02866 PF00361 Proton-conducting membrane transporter J171_02866 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J171_02867 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J171_02868 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 J171_02869 PF12838 4Fe-4S dicluster domain J171_02870 PF00146 NADH dehydrogenase J171_02871 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J171_02871 PF00384 Molybdopterin oxidoreductase J171_02871 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal J171_02872 PF10531 SLBB domain J171_02872 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J171_02872 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J171_02874 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit J171_02875 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit J171_02876 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit J171_02877 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 J171_02880 PF00121 Triosephosphate isomerase J171_02881 PF00106 short chain dehydrogenase J171_02884 PF00990 Diguanylate cyclase, GGDEF domain J171_02884 PF03707 Bacterial signalling protein N terminal repeat J171_02884 PF00563 EAL domain J171_02887 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J171_02887 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J171_02887 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J171_02887 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J171_02888 PF17848 Acetyl-coA carboxylase zinc finger domain J171_02888 PF01039 Carboxyl transferase domain J171_02889 PF00290 Tryptophan synthase alpha chain J171_02891 PF00291 Pyridoxal-phosphate dependent enzyme J171_02892 PF03466 LysR substrate binding domain J171_02892 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_02893 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase J171_02894 PF01416 tRNA pseudouridine synthase J171_02898 PF01118 Semialdehyde dehydrogenase, NAD binding domain J171_02898 PF02774 Semialdehyde dehydrogenase, dimerisation domain J171_02899 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J171_02899 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J171_02900 PF01264 Chorismate synthase J171_02901 PF05175 Methyltransferase small domain J171_02902 PF02630 SCO1/SenC J171_02903 PF02666 Phosphatidylserine decarboxylase J171_02905 PF05872 Bacterial protein of unknown function (DUF853) J171_02906 PF00293 NUDIX domain J171_02909 PF01272 Transcription elongation factor, GreA/GreB, C-term J171_02909 PF03449 Transcription elongation factor, N-terminal J171_02910 PF00919 Uncharacterized protein family UPF0004 J171_02910 PF18693 TRAM domain J171_02910 PF04055 Radical SAM superfamily J171_02911 PF01738 Dienelactone hydrolase family J171_02915 PF00692 dUTPase J171_02916 PF10609 NUBPL iron-transfer P-loop NTPase J171_02917 PF00593 TonB dependent receptor J171_02917 PF07715 TonB-dependent Receptor Plug Domain J171_02920 PF05649 Peptidase family M13 J171_02920 PF01431 Peptidase family M13 J171_02921 PF01431 Peptidase family M13 J171_02921 PF05649 Peptidase family M13 J171_02924 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J171_02925 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J171_02925 PF07992 Pyridine nucleotide-disulphide oxidoreductase J171_02926 PF01266 FAD dependent oxidoreductase J171_02927 PF04235 Protein of unknown function (DUF418) J171_02928 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J171_02929 PF00877 NlpC/P60 family J171_02930 PF00877 NlpC/P60 family J171_02933 PF00375 Sodium:dicarboxylate symporter family J171_02934 PF00245 Alkaline phosphatase J171_02935 PF09179 TilS substrate binding domain J171_02935 PF01171 PP-loop family J171_02935 PF11734 TilS substrate C-terminal domain J171_02936 PF02609 Exonuclease VII small subunit J171_02937 PF00348 Polyprenyl synthetase J171_02938 PF14521 Lysine-specific metallo-endopeptidase J171_02940 PF01523 Putative modulator of DNA gyrase J171_02941 PF04751 Protein of unknown function (DUF615) J171_02942 PF01523 Putative modulator of DNA gyrase J171_02944 PF13116 Protein of unknown function J171_02944 PF13502 AsmA-like C-terminal region J171_02945 PF10150 Ribonuclease E/G family J171_02945 PF00575 S1 RNA binding domain J171_02946 PF02545 Maf-like protein J171_02947 PF04402 Protein of unknown function (DUF541) J171_02950 PF02590 Predicted SPOUT methyltransferase J171_02953 PF01467 Cytidylyltransferase-like J171_02956 PF00133 tRNA synthetases class I (I, L, M and V) J171_02956 PF13603 Leucyl-tRNA synthetase, Domain 2 J171_02956 PF08264 Anticodon-binding domain of tRNA J171_02958 PF00085 Thioredoxin J171_02963 PF04070 Domain of unknown function (DUF378) J171_02964 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J171_02966 PF03466 LysR substrate binding domain J171_02966 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_02971 PF00664 ABC transporter transmembrane region J171_02971 PF00005 ABC transporter J171_02974 PF00873 AcrB/AcrD/AcrF family J171_02977 PF02321 Outer membrane efflux protein J171_02978 PF00072 Response regulator receiver domain J171_02978 PF00486 Transcriptional regulatory protein, C terminal J171_02979 PF00672 HAMP domain J171_02979 PF00512 His Kinase A (phospho-acceptor) domain J171_02979 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_02980 PF00999 Sodium/hydrogen exchanger family J171_02981 PF00144 Beta-lactamase J171_02982 PF03737 Aldolase/RraA J171_02985 PF00072 Response regulator receiver domain J171_02985 PF00990 Diguanylate cyclase, GGDEF domain J171_02986 PF01479 S4 domain J171_02986 PF00849 RNA pseudouridylate synthase J171_02987 PF00563 EAL domain J171_02987 PF00990 Diguanylate cyclase, GGDEF domain J171_02987 PF08448 PAS fold J171_02988 PF00270 DEAD/DEAH box helicase J171_02988 PF03880 DbpA RNA binding domain J171_02988 PF00271 Helicase conserved C-terminal domain J171_02997 PF06029 AlkA N-terminal domain J171_02997 PF00730 HhH-GPD superfamily base excision DNA repair protein J171_02998 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J171_02998 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J171_03000 PF00654 Voltage gated chloride channel J171_03001 PF08240 Alcohol dehydrogenase GroES-like domain J171_03001 PF00107 Zinc-binding dehydrogenase J171_03004 PF07715 TonB-dependent Receptor Plug Domain J171_03004 PF00593 TonB dependent receptor J171_03006 PF00082 Subtilase family J171_03006 PF01483 Proprotein convertase P-domain J171_03009 PF00082 Subtilase family J171_03009 PF01483 Proprotein convertase P-domain J171_03011 PF00248 Aldo/keto reductase family J171_03012 PF07690 Major Facilitator Superfamily J171_03013 PF03466 LysR substrate binding domain J171_03013 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_03015 PF12833 Helix-turn-helix domain J171_03015 PF06719 AraC-type transcriptional regulator N-terminus J171_03017 PF16859 Tetracyclin repressor-like, C-terminal domain J171_03017 PF00440 Bacterial regulatory proteins, tetR family J171_03018 PF02321 Outer membrane efflux protein J171_03019 PF00873 AcrB/AcrD/AcrF family J171_03020 PF00529 HlyD membrane-fusion protein of T1SS J171_03020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J171_03022 PF01475 Ferric uptake regulator family J171_03023 PF00749 tRNA synthetases class I (E and Q), catalytic domain J171_03028 PF06123 Inner membrane protein CreD J171_03030 PF00512 His Kinase A (phospho-acceptor) domain J171_03030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_03030 PF00672 HAMP domain J171_03031 PF00072 Response regulator receiver domain J171_03031 PF00486 Transcriptional regulatory protein, C terminal J171_03032 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ J171_03034 PF02559 CarD-like/TRCF domain J171_03034 PF00270 DEAD/DEAH box helicase J171_03034 PF00271 Helicase conserved C-terminal domain J171_03034 PF03461 TRCF domain J171_03034 PF17757 UvrB interaction domain J171_03041 PF01584 CheW-like domain J171_03041 PF09078 CheY binding J171_03041 PF02895 Signal transducing histidine kinase, homodimeric domain J171_03041 PF01627 Hpt domain J171_03041 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_03042 PF00672 HAMP domain J171_03042 PF02203 Tar ligand binding domain homologue J171_03042 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_03043 PF01584 CheW-like domain J171_03044 PF00563 EAL domain J171_03044 PF00990 Diguanylate cyclase, GGDEF domain J171_03044 PF13426 PAS domain J171_03045 PF03705 CheR methyltransferase, all-alpha domain J171_03045 PF01739 CheR methyltransferase, SAM binding domain J171_03046 PF00072 Response regulator receiver domain J171_03046 PF01339 CheB methylesterase J171_03047 PF13091 PLD-like domain J171_03048 PF05649 Peptidase family M13 J171_03048 PF01431 Peptidase family M13 J171_03050 PF00300 Histidine phosphatase superfamily (branch 1) J171_03051 PF04493 Endonuclease V J171_03053 PF02678 Pirin J171_03053 PF05726 Pirin C-terminal cupin domain J171_03056 PF02678 Pirin J171_03056 PF05726 Pirin C-terminal cupin domain J171_03057 PF13722 5TM C-terminal transporter carbon starvation CstA J171_03057 PF02554 Carbon starvation protein CstA J171_03058 PF04328 Selenoprotein, putative J171_03067 PF01527 Transposase J171_03069 PF13478 XdhC Rossmann domain J171_03069 PF02625 XdhC and CoxI family J171_03070 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J171_03070 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J171_03071 PF00941 FAD binding domain in molybdopterin dehydrogenase J171_03071 PF03450 CO dehydrogenase flavoprotein C-terminal domain J171_03072 PF01799 [2Fe-2S] binding domain J171_03072 PF00111 2Fe-2S iron-sulfur cluster binding domain J171_03072 PF10518 TAT (twin-arginine translocation) pathway signal sequence J171_03073 PF14765 Polyketide synthase dehydratase J171_03073 PF00550 Phosphopantetheine attachment site J171_03073 PF08659 KR domain J171_03073 PF02801 Beta-ketoacyl synthase, C-terminal domain J171_03073 PF16197 Ketoacyl-synthetase C-terminal extension J171_03073 PF00109 Beta-ketoacyl synthase, N-terminal domain J171_03073 PF09277 Erythronolide synthase, docking J171_03073 PF08990 Erythronolide synthase docking J171_03073 PF00698 Acyl transferase domain J171_03073 PF08240 Alcohol dehydrogenase GroES-like domain J171_03074 PF00360 Phytochrome region J171_03074 PF00990 Diguanylate cyclase, GGDEF domain J171_03074 PF01590 GAF domain J171_03074 PF00563 EAL domain J171_03077 PF02384 N-6 DNA Methylase J171_03077 PF12161 HsdM N-terminal domain J171_03083 PF00436 Single-strand binding protein family J171_03084 PF00348 Polyprenyl synthetase J171_03086 PF02875 Mur ligase family, glutamate ligase domain J171_03086 PF08245 Mur ligase middle domain J171_03089 PF00696 Amino acid kinase family J171_03089 PF01842 ACT domain J171_03090 PF02567 Phenazine biosynthesis-like protein J171_03091 PF02567 Phenazine biosynthesis-like protein J171_03093 PF02566 OsmC-like protein J171_03094 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J171_03094 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J171_03095 PF03652 Holliday junction resolvase J171_03096 PF02622 Uncharacterized ACR, COG1678 J171_03097 PF13673 Acetyltransferase (GNAT) domain J171_03097 PF13302 Acetyltransferase (GNAT) domain J171_03097 PF00117 Glutamine amidotransferase class-I J171_03097 PF00958 GMP synthase C terminal domain J171_03097 PF03352 Methyladenine glycosylase J171_03100 PF03211 Pectate lyase J171_03101 PF00437 Type II/IV secretion system protein J171_03102 PF00437 Type II/IV secretion system protein J171_03103 PF01168 Alanine racemase, N-terminal domain J171_03104 PF14748 Pyrroline-5-carboxylate reductase dimerisation J171_03104 PF03807 NADP oxidoreductase coenzyme F420-dependent J171_03106 PF01551 Peptidase family M23 J171_03110 PF01965 DJ-1/PfpI family J171_03112 PF02082 Transcriptional regulator J171_03113 PF01458 Uncharacterized protein family (UPF0051) J171_03114 PF00005 ABC transporter J171_03115 PF01458 Uncharacterized protein family (UPF0051) J171_03116 PF00266 Aminotransferase class-V J171_03118 PF00355 Rieske [2Fe-2S] domain J171_03119 PF00593 TonB dependent receptor J171_03119 PF07715 TonB-dependent Receptor Plug Domain J171_03120 PF13640 2OG-Fe(II) oxygenase superfamily J171_03120 PF18331 PKHD-type hydroxylase C-terminal domain J171_03125 PF02424 ApbE family J171_03126 PF00258 Flavodoxin J171_03126 PF00175 Oxidoreductase NAD-binding domain J171_03126 PF00667 FAD binding domain J171_03130 PF07687 Peptidase dimerisation domain J171_03130 PF01546 Peptidase family M20/M25/M40 J171_03132 PF01636 Phosphotransferase enzyme family J171_03133 PF00483 Nucleotidyl transferase J171_03134 PF00308 Bacterial dnaA protein J171_03135 PF01594 AI-2E family transporter J171_03137 PF02769 AIR synthase related protein, C-terminal domain J171_03137 PF00586 AIR synthase related protein, N-terminal domain J171_03139 PF00551 Formyl transferase J171_03143 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J171_03144 PF01722 BolA-like protein J171_03145 PF01380 SIS domain J171_03145 PF00571 CBS domain J171_03148 PF03968 OstA-like protein J171_03149 PF00005 ABC transporter J171_03150 PF04963 Sigma-54 factor, core binding domain J171_03150 PF00309 Sigma-54 factor, Activator interacting domain (AID) J171_03150 PF04552 Sigma-54, DNA binding domain J171_03151 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J171_03152 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J171_03153 PF07475 HPr Serine kinase C-terminal domain J171_03153 PF02603 HPr Serine kinase N terminus J171_03154 PF03668 P-loop ATPase protein family J171_03156 PF00381 PTS HPr component phosphorylation site J171_03157 PF00391 PEP-utilising enzyme, mobile domain J171_03157 PF05524 PEP-utilising enzyme, N-terminal J171_03157 PF02896 PEP-utilising enzyme, TIM barrel domain J171_03158 PF00571 CBS domain J171_03158 PF01769 Divalent cation transporter J171_03158 PF03448 MgtE intracellular N domain J171_03159 PF00756 Putative esterase J171_03160 PF02322 Cytochrome bd terminal oxidase subunit II J171_03161 PF01654 Cytochrome bd terminal oxidase subunit I J171_03163 PF00324 Amino acid permease J171_03164 PF00544 Pectate lyase J171_03165 PF00561 alpha/beta hydrolase fold J171_03166 PF00196 Bacterial regulatory proteins, luxR family J171_03167 PF00324 Amino acid permease J171_03172 PF12706 Beta-lactamase superfamily domain J171_03173 PF04820 Tryptophan halogenase J171_03178 PF09278 MerR, DNA binding J171_03178 PF00376 MerR family regulatory protein J171_03179 PF07690 Major Facilitator Superfamily J171_03181 PF03738 Glutathionylspermidine synthase preATP-grasp J171_03186 PF04012 PspA/IM30 family J171_03188 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J171_03188 PF01243 Pyridoxamine 5'-phosphate oxidase J171_03189 PF01202 Shikimate kinase J171_03190 PF01761 3-dehydroquinate synthase J171_03192 PF01208 Uroporphyrinogen decarboxylase (URO-D) J171_03205 PF01590 GAF domain J171_03205 PF02954 Bacterial regulatory protein, Fis family J171_03205 PF00158 Sigma-54 interaction domain J171_03206 PF07690 Major Facilitator Superfamily J171_03207 PF01627 Hpt domain J171_03207 PF17149 Periplasmic sensor domain found in signal transduction proteins J171_03207 PF00672 HAMP domain J171_03207 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_03207 PF00072 Response regulator receiver domain J171_03207 PF00512 His Kinase A (phospho-acceptor) domain J171_03208 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_03208 PF00512 His Kinase A (phospho-acceptor) domain J171_03208 PF01627 Hpt domain J171_03208 PF00072 Response regulator receiver domain J171_03208 PF00672 HAMP domain J171_03208 PF17149 Periplasmic sensor domain found in signal transduction proteins J171_03210 PF00072 Response regulator receiver domain J171_03210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_03210 PF00512 His Kinase A (phospho-acceptor) domain J171_03210 PF01627 Hpt domain J171_03211 PF04264 YceI-like domain J171_03215 PF03315 Serine dehydratase beta chain J171_03215 PF03313 Serine dehydratase alpha chain J171_03216 PF12697 Alpha/beta hydrolase family J171_03217 PF00696 Amino acid kinase family J171_03217 PF00742 Homoserine dehydrogenase J171_03217 PF03447 Homoserine dehydrogenase, NAD binding domain J171_03218 PF01053 Cys/Met metabolism PLP-dependent enzyme J171_03219 PF00561 alpha/beta hydrolase fold J171_03221 PF01476 LysM domain J171_03221 PF08525 Opacity-associated protein A N-terminal motif J171_03221 PF01551 Peptidase family M23 J171_03222 PF16658 Class II release factor RF3, C-terminal domain J171_03222 PF00009 Elongation factor Tu GTP binding domain J171_03223 PF03006 Haemolysin-III related J171_03224 PF05170 AsmA family J171_03225 PF00571 CBS domain J171_03225 PF00478 IMP dehydrogenase / GMP reductase domain J171_03226 PF00535 Glycosyl transferase family 2 J171_03227 PF00912 Transglycosylase J171_03228 PF01430 Hsp33 protein J171_03230 PF00593 TonB dependent receptor J171_03230 PF07715 TonB-dependent Receptor Plug Domain J171_03232 PF00440 Bacterial regulatory proteins, tetR family J171_03233 PF00561 alpha/beta hydrolase fold J171_03234 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J171_03234 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J171_03234 PF09317 Domain of unknown function (DUF1974) J171_03239 PF01597 Glycine cleavage H-protein J171_03240 PF01571 Aminomethyltransferase folate-binding domain J171_03240 PF08669 Glycine cleavage T-protein C-terminal barrel domain J171_03242 PF16200 C-terminal region of band_7 J171_03242 PF01145 SPFH domain / Band 7 family J171_03243 PF02694 Uncharacterised BCR, YnfA/UPF0060 family J171_03244 PF03819 MazG nucleotide pyrophosphohydrolase domain J171_03245 PF00459 Inositol monophosphatase family J171_03246 PF00293 NUDIX domain J171_03247 PF00202 Aminotransferase class-III J171_03248 PF04452 RNA methyltransferase J171_03249 PF02685 Glucokinase J171_03252 PF00704 Glycosyl hydrolases family 18 J171_03252 PF01476 LysM domain J171_03253 PF07691 PA14 domain J171_03253 PF00728 Glycosyl hydrolase family 20, catalytic domain J171_03253 PF02838 Glycosyl hydrolase family 20, domain 2 J171_03255 PF14310 Fibronectin type III-like domain J171_03255 PF00933 Glycosyl hydrolase family 3 N terminal domain J171_03255 PF01915 Glycosyl hydrolase family 3 C-terminal domain J171_03255 PF07691 PA14 domain J171_03257 PF01301 Glycosyl hydrolases family 35 J171_03258 PF13520 Amino acid permease J171_03260 PF11975 Family 4 glycosyl hydrolase C-terminal domain J171_03260 PF02056 Family 4 glycosyl hydrolase J171_03262 PF17678 Glycosyl hydrolase family 92 N-terminal domain J171_03262 PF07971 Glycosyl hydrolase family 92 J171_03263 PF01301 Glycosyl hydrolases family 35 J171_03269 PF03932 CutC family J171_03270 PF01112 Asparaginase J171_03271 PF13302 Acetyltransferase (GNAT) domain J171_03274 PF01584 CheW-like domain J171_03274 PF01627 Hpt domain J171_03274 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_03274 PF00072 Response regulator receiver domain J171_03275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_03275 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J171_03277 PF00072 Response regulator receiver domain J171_03278 PF00072 Response regulator receiver domain J171_03279 PF02951 Prokaryotic glutathione synthetase, N-terminal domain J171_03279 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain J171_03281 PF03747 ADP-ribosylglycohydrolase J171_03282 PF00814 Glycoprotease family J171_03283 PF04851 Type III restriction enzyme, res subunit J171_03283 PF13307 Helicase C-terminal domain J171_03285 PF00905 Penicillin binding protein transpeptidase domain J171_03285 PF14814 Bifunctional transglycosylase second domain J171_03285 PF00912 Transglycosylase J171_03286 PF00535 Glycosyl transferase family 2 J171_03288 PF13291 ACT domain J171_03288 PF04607 Region found in RelA / SpoT proteins J171_03288 PF02824 TGS domain J171_03289 PF12706 Beta-lactamase superfamily domain J171_03290 PF03070 TENA/THI-4/PQQC family J171_03291 PF05402 Coenzyme PQQ synthesis protein D (PqqD) J171_03292 PF04055 Radical SAM superfamily J171_03292 PF13186 Iron-sulfur cluster-binding domain J171_03295 PF02685 Glucokinase J171_03297 PF04408 Helicase associated domain (HA2) J171_03297 PF00271 Helicase conserved C-terminal domain J171_03297 PF00270 DEAD/DEAH box helicase J171_03297 PF11898 Domain of unknown function (DUF3418) J171_03297 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J171_03298 PF00210 Ferritin-like domain J171_03299 PF16124 RecQ zinc-binding J171_03299 PF00570 HRDC domain J171_03299 PF00271 Helicase conserved C-terminal domain J171_03299 PF00270 DEAD/DEAH box helicase J171_03299 PF09382 RQC domain J171_03306 PF00672 HAMP domain J171_03306 PF02203 Tar ligand binding domain homologue J171_03306 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_03310 PF13581 Histidine kinase-like ATPase domain J171_03310 PF07536 HWE histidine kinase J171_03310 PF13426 PAS domain J171_03311 PF06508 Queuosine biosynthesis protein QueC J171_03313 PF04055 Radical SAM superfamily J171_03315 PF00691 OmpA family J171_03316 PF07676 WD40-like Beta Propeller Repeat J171_03316 PF04052 TolB amino-terminal domain J171_03318 PF02472 Biopolymer transport protein ExbD/TolR J171_03319 PF01618 MotA/TolQ/ExbB proton channel family J171_03320 PF03061 Thioesterase superfamily J171_03321 PF17864 RuvB AAA lid domain J171_03321 PF05491 RuvB C-terminal winged helix domain J171_03321 PF05496 Holliday junction DNA helicase RuvB P-loop domain J171_03323 PF02705 K+ potassium transporter J171_03324 PF01330 RuvA N terminal domain J171_03324 PF07499 RuvA, C-terminal domain J171_03325 PF02075 Crossover junction endodeoxyribonuclease RuvC J171_03326 PF01709 Transcriptional regulator J171_03329 PF01336 OB-fold nucleic acid binding domain J171_03329 PF00152 tRNA synthetases class II (D, K and N) J171_03329 PF02938 GAD domain J171_03332 PF07690 Major Facilitator Superfamily J171_03335 PF04185 Phosphoesterase family J171_03335 PF05506 Domain of unknown function (DUF756) J171_03338 PF03466 LysR substrate binding domain J171_03338 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_03340 PF12848 ABC transporter J171_03340 PF00005 ABC transporter J171_03341 PF00593 TonB dependent receptor J171_03341 PF07715 TonB-dependent Receptor Plug Domain J171_03343 PF00593 TonB dependent receptor J171_03343 PF07715 TonB-dependent Receptor Plug Domain J171_03344 PF07715 TonB-dependent Receptor Plug Domain J171_03344 PF00593 TonB dependent receptor J171_03345 PF00067 Cytochrome P450 J171_03346 PF00999 Sodium/hydrogen exchanger family J171_03346 PF02254 TrkA-N domain J171_03351 PF07715 TonB-dependent Receptor Plug Domain J171_03351 PF07660 Secretin and TonB N terminus short domain J171_03351 PF00593 TonB dependent receptor J171_03353 PF06276 Ferric iron reductase FhuF-like transporter J171_03353 PF04183 IucA / IucC family J171_03354 PF07690 Major Facilitator Superfamily J171_03356 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J171_03356 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J171_03359 PF02654 Cobalamin-5-phosphate synthase J171_03361 PF02277 Phosphoribosyltransferase J171_03362 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase J171_03363 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J171_03363 PF07685 CobB/CobQ-like glutamine amidotransferase domain J171_03364 PF00155 Aminotransferase class I and II J171_03366 PF03186 CobD/Cbib protein J171_03366 PF17113 Regulatory signalling modulator protein AmpE J171_03367 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP J171_03367 PF12557 Cob(I)alamin adenosyltransferase N terminal J171_03370 PF07715 TonB-dependent Receptor Plug Domain J171_03370 PF00593 TonB dependent receptor J171_03372 PF02861 Clp amino terminal domain, pathogenicity island component J171_03372 PF00004 ATPase family associated with various cellular activities (AAA) J171_03372 PF17871 AAA lid domain J171_03372 PF07724 AAA domain (Cdc48 subfamily) J171_03372 PF10431 C-terminal, D2-small domain, of ClpB protein J171_03373 PF00005 ABC transporter J171_03374 PF00528 Binding-protein-dependent transport system inner membrane component J171_03375 PF09084 NMT1/THI5 like J171_03376 PF00248 Aldo/keto reductase family J171_03378 PF07715 TonB-dependent Receptor Plug Domain J171_03378 PF00593 TonB dependent receptor J171_03379 PF01541 GIY-YIG catalytic domain J171_03386 PF07715 TonB-dependent Receptor Plug Domain J171_03386 PF00593 TonB dependent receptor J171_03387 PF02358 Trehalose-phosphatase J171_03388 PF00723 Glycosyl hydrolases family 15 J171_03389 PF00982 Glycosyltransferase family 20 J171_03390 PF01011 PQQ enzyme repeat J171_03391 PF00672 HAMP domain J171_03391 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_03391 PF02203 Tar ligand binding domain homologue J171_03392 PF04134 Protein of unknown function, DUF393 J171_03395 PF00849 RNA pseudouridylate synthase J171_03396 PF13525 Outer membrane lipoprotein J171_03398 PF02540 NAD synthase J171_03398 PF00795 Carbon-nitrogen hydrolase J171_03400 PF01527 Transposase J171_03404 PF13406 Transglycosylase SLT domain J171_03405 PF13700 Domain of unknown function (DUF4158) J171_03405 PF01526 Tn3 transposase DDE domain J171_03409 PF01129 NAD:arginine ADP-ribosyltransferase J171_03414 PF00549 CoA-ligase J171_03414 PF02629 CoA binding domain J171_03415 PF00549 CoA-ligase J171_03415 PF08442 ATP-grasp domain J171_03416 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_03416 PF00512 His Kinase A (phospho-acceptor) domain J171_03417 PF00072 Response regulator receiver domain J171_03417 PF02954 Bacterial regulatory protein, Fis family J171_03417 PF00158 Sigma-54 interaction domain J171_03419 PF00437 Type II/IV secretion system protein J171_03419 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J171_03420 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J171_03420 PF00437 Type II/IV secretion system protein J171_03421 PF00437 Type II/IV secretion system protein J171_03421 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J171_03422 PF00114 Pilin (bacterial filament) J171_03422 PF07963 Prokaryotic N-terminal methylation motif J171_03423 PF00114 Pilin (bacterial filament) J171_03423 PF07963 Prokaryotic N-terminal methylation motif J171_03424 PF00482 Type II secretion system (T2SS), protein F J171_03425 PF06750 Bacterial Peptidase A24 N-terminal domain J171_03425 PF01478 Type IV leader peptidase family J171_03426 PF01121 Dephospho-CoA kinase J171_03429 PF01527 Transposase J171_03430 PF13276 HTH-like domain J171_03430 PF00665 Integrase core domain J171_03430 PF13333 Integrase core domain J171_03431 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_03431 PF00512 His Kinase A (phospho-acceptor) domain J171_03431 PF00989 PAS fold J171_03431 PF16736 Single Cache-like J171_03432 PF00072 Response regulator receiver domain J171_03432 PF00486 Transcriptional regulatory protein, C terminal J171_03434 PF18030 RimK PreATP-grasp domain J171_03434 PF08443 RimK-like ATP-grasp domain J171_03435 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J171_03435 PF00128 Alpha amylase, catalytic domain J171_03448 PF04002 RadC-like JAB domain J171_03453 PF00072 Response regulator receiver domain J171_03453 PF13426 PAS domain J171_03453 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_03454 PF00072 Response regulator receiver domain J171_03454 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_03454 PF13426 PAS domain J171_03460 PF01527 Transposase J171_03469 PF00512 His Kinase A (phospho-acceptor) domain J171_03469 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_03469 PF00072 Response regulator receiver domain J171_03469 PF13188 PAS domain J171_03469 PF08448 PAS fold J171_03473 PF13676 TIR domain J171_03477 PF03797 Autotransporter beta-domain J171_03477 PF00657 GDSL-like Lipase/Acylhydrolase J171_03479 PF05690 Thiazole biosynthesis protein ThiG J171_03480 PF02390 Putative methyltransferase J171_03481 PF03600 Citrate transporter J171_03481 PF02080 TrkA-C domain J171_03484 PF01557 Fumarylacetoacetate (FAA) hydrolase family J171_03485 PF01741 Large-conductance mechanosensitive channel, MscL J171_03487 PF00356 Bacterial regulatory proteins, lacI family J171_03489 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain J171_03489 PF00703 Glycosyl hydrolases family 2 J171_03489 PF02837 Glycosyl hydrolases family 2, sugar binding domain J171_03490 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation J171_03490 PF14508 Glycosyl-hydrolase 97 N-terminal J171_03490 PF10566 Glycoside hydrolase 97 J171_03492 PF00135 Carboxylesterase family J171_03493 PF00588 SpoU rRNA Methylase family J171_03493 PF08032 RNA 2'-O ribose methyltransferase substrate binding J171_03495 PF11838 ERAP1-like C-terminal domain J171_03495 PF01433 Peptidase family M1 domain J171_03498 PF01527 Transposase J171_03504 PF00873 AcrB/AcrD/AcrF family J171_03505 PF00529 HlyD membrane-fusion protein of T1SS J171_03505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J171_03506 PF00009 Elongation factor Tu GTP binding domain J171_03507 PF01507 Phosphoadenosine phosphosulfate reductase family J171_03508 PF00667 FAD binding domain J171_03508 PF00175 Oxidoreductase NAD-binding domain J171_03508 PF00258 Flavodoxin J171_03509 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J171_03509 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J171_03510 PF01507 Phosphoadenosine phosphosulfate reductase family J171_03514 PF01627 Hpt domain J171_03514 PF00512 His Kinase A (phospho-acceptor) domain J171_03514 PF00072 Response regulator receiver domain J171_03514 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_03516 PF03466 LysR substrate binding domain J171_03516 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_03517 PF14824 Sirohaem biosynthesis protein central J171_03517 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J171_03517 PF10414 Sirohaem synthase dimerisation region J171_03518 PF00291 Pyridoxal-phosphate dependent enzyme J171_03520 PF01661 Macro domain J171_03521 PF00274 Fructose-bisphosphate aldolase class-I J171_03522 PF02887 Pyruvate kinase, alpha/beta domain J171_03522 PF00224 Pyruvate kinase, barrel domain J171_03524 PF00162 Phosphoglycerate kinase J171_03529 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J171_03529 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J171_03531 PF03922 OmpW family J171_03532 PF03922 OmpW family J171_03534 PF04273 Putative phosphatase (DUF442) J171_03534 PF00753 Metallo-beta-lactamase superfamily J171_03536 PF00528 Binding-protein-dependent transport system inner membrane component J171_03537 PF00005 ABC transporter J171_03537 PF03459 TOBE domain J171_03544 PF01476 LysM domain J171_03544 PF03734 L,D-transpeptidase catalytic domain J171_03545 PF04225 Opacity-associated protein A LysM-like domain J171_03545 PF01551 Peptidase family M23 J171_03547 PF00593 TonB dependent receptor J171_03547 PF07715 TonB-dependent Receptor Plug Domain J171_03548 PF12146 Serine aminopeptidase, S33 J171_03549 PF02779 Transketolase, pyrimidine binding domain J171_03549 PF00456 Transketolase, thiamine diphosphate binding domain J171_03549 PF02780 Transketolase, C-terminal domain J171_03550 PF00375 Sodium:dicarboxylate symporter family J171_03552 PF00092 von Willebrand factor type A domain J171_03552 PF07584 Aerotolerance regulator N-terminal J171_03556 PF07726 ATPase family associated with various cellular activities (AAA) J171_03556 PF17863 AAA lid domain J171_03558 PF11741 AMIN domain J171_03558 PF00263 Bacterial type II and III secretion system protein J171_03558 PF03958 Bacterial type II/III secretion system short domain J171_03558 PF07660 Secretin and TonB N terminus short domain J171_03563 PF00905 Penicillin binding protein transpeptidase domain J171_03563 PF17092 Penicillin-binding protein OB-like domain J171_03563 PF00912 Transglycosylase J171_03566 PF00285 Citrate synthase, C-terminal domain J171_03567 PF01197 Ribosomal protein L31 J171_03568 PF01156 Inosine-uridine preferring nucleoside hydrolase J171_03569 PF17191 RecG wedge domain J171_03569 PF00271 Helicase conserved C-terminal domain J171_03569 PF00270 DEAD/DEAH box helicase J171_03570 PF01042 Endoribonuclease L-PSP J171_03571 PF02824 TGS domain J171_03571 PF13291 ACT domain J171_03571 PF04607 Region found in RelA / SpoT proteins J171_03572 PF01192 RNA polymerase Rpb6 J171_03573 PF00625 Guanylate kinase J171_03574 PF03755 YicC-like family, N-terminal region J171_03574 PF08340 Domain of unknown function (DUF1732) J171_03575 PF03725 3' exoribonuclease family, domain 2 J171_03575 PF01138 3' exoribonuclease family, domain 1 J171_03577 PF01725 Ham1 family J171_03578 PF04055 Radical SAM superfamily J171_03578 PF06969 HemN C-terminal domain J171_03581 PF00557 Metallopeptidase family M24 J171_03583 PF05195 Aminopeptidase P, N-terminal domain J171_03583 PF00557 Metallopeptidase family M24 J171_03584 PF03695 Uncharacterised protein family (UPF0149) J171_03586 PF05164 Cell division protein ZapA J171_03588 PF01812 5-formyltetrahydrofolate cyclo-ligase family J171_03590 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J171_03592 PF13369 Transglutaminase-like superfamily J171_03593 PF00301 Rubredoxin J171_03594 PF02581 Thiamine monophosphate synthase J171_03597 PF00202 Aminotransferase class-III J171_03598 PF00196 Bacterial regulatory proteins, luxR family J171_03598 PF17874 MalT-like TPR region J171_03599 PF00127 Copper binding proteins, plastocyanin/azurin family J171_03600 PF00155 Aminotransferase class I and II J171_03602 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J171_03602 PF00034 Cytochrome c J171_03603 PF01593 Flavin containing amine oxidoreductase J171_03606 PF00202 Aminotransferase class-III J171_03607 PF00027 Cyclic nucleotide-binding domain J171_03607 PF00520 Ion transport protein J171_03610 PF01569 PAP2 superfamily J171_03611 PF01062 Bestrophin, RFP-TM, chloride channel J171_03613 PF02875 Mur ligase family, glutamate ligase domain J171_03613 PF01225 Mur ligase family, catalytic domain J171_03613 PF08245 Mur ligase middle domain J171_03615 PF00365 Phosphofructokinase J171_03617 PF03030 Inorganic H+ pyrophosphatase J171_03619 PF00719 Inorganic pyrophosphatase J171_03621 PF07715 TonB-dependent Receptor Plug Domain J171_03621 PF00593 TonB dependent receptor J171_03622 PF12833 Helix-turn-helix domain J171_03623 PF00486 Transcriptional regulatory protein, C terminal J171_03623 PF18500 CadC C-terminal domain 1 J171_03624 PF13667 ThiC-associated domain J171_03624 PF01964 Radical SAM ThiC family J171_03626 PF07715 TonB-dependent Receptor Plug Domain J171_03626 PF00593 TonB dependent receptor J171_03627 PF02203 Tar ligand binding domain homologue J171_03627 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_03627 PF00672 HAMP domain J171_03629 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J171_03629 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J171_03630 PF00205 Thiamine pyrophosphate enzyme, central domain J171_03630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J171_03630 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J171_03632 PF00291 Pyridoxal-phosphate dependent enzyme J171_03633 PF08502 LeuA allosteric (dimerisation) domain J171_03633 PF00682 HMGL-like J171_03634 PF00180 Isocitrate/isopropylmalate dehydrogenase J171_03635 PF00694 Aconitase C-terminal domain J171_03636 PF00330 Aconitase family (aconitate hydratase) J171_03637 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_03638 PF17151 Periplasmic sensor domain J171_03638 PF00990 Diguanylate cyclase, GGDEF domain J171_03641 PF02321 Outer membrane efflux protein J171_03642 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) J171_03643 PF03279 Bacterial lipid A biosynthesis acyltransferase J171_03648 PF01515 Phosphate acetyl/butaryl transferase J171_03648 PF03949 Malic enzyme, NAD binding domain J171_03648 PF00390 Malic enzyme, N-terminal domain J171_03649 PF00375 Sodium:dicarboxylate symporter family J171_03651 PF00512 His Kinase A (phospho-acceptor) domain J171_03651 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_03651 PF02743 Cache domain J171_03652 PF07690 Major Facilitator Superfamily J171_03654 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_03654 PF03466 LysR substrate binding domain J171_03655 PF00248 Aldo/keto reductase family J171_03659 PF00196 Bacterial regulatory proteins, luxR family J171_03659 PF00072 Response regulator receiver domain J171_03661 PF08521 Two-component sensor kinase N-terminal J171_03661 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_03661 PF00512 His Kinase A (phospho-acceptor) domain J171_03662 PF00072 Response regulator receiver domain J171_03662 PF00486 Transcriptional regulatory protein, C terminal J171_03664 PF03600 Citrate transporter J171_03666 PF00106 short chain dehydrogenase J171_03667 PF00356 Bacterial regulatory proteins, lacI family J171_03670 PF00128 Alpha amylase, catalytic domain J171_03673 PF03193 RsgA GTPase J171_03677 PF00593 TonB dependent receptor J171_03677 PF07715 TonB-dependent Receptor Plug Domain J171_03678 PF01522 Polysaccharide deacetylase J171_03679 PF00462 Glutaredoxin J171_03682 PF01527 Transposase J171_03687 PF02645 Uncharacterised protein, DegV family COG1307 J171_03688 PF01327 Polypeptide deformylase J171_03689 PF03960 ArsC family J171_03692 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) J171_03693 PF01270 Glycosyl hydrolases family 8 J171_03694 PF03170 Bacterial cellulose synthase subunit J171_03695 PF07238 PilZ domain J171_03695 PF03552 Cellulose synthase J171_03695 PF00535 Glycosyl transferase family 2 J171_03699 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain J171_03699 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family J171_03707 PF07715 TonB-dependent Receptor Plug Domain J171_03707 PF00593 TonB dependent receptor J171_03709 PF07702 UTRA domain J171_03709 PF00392 Bacterial regulatory proteins, gntR family J171_03711 PF00263 Bacterial type II and III secretion system protein J171_03711 PF03958 Bacterial type II/III secretion system short domain J171_03713 PF10741 Type II secretion system (T2SS), protein M subtype b J171_03714 PF05137 Fimbrial assembly protein (PilN) J171_03715 PF03934 Type II secretion system (T2SS), protein K J171_03717 PF07963 Prokaryotic N-terminal methylation motif J171_03718 PF12019 Type II transport protein GspH J171_03719 PF08334 Type II secretion system (T2SS), protein G J171_03720 PF00482 Type II secretion system (T2SS), protein F J171_03721 PF00437 Type II/IV secretion system protein J171_03721 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J171_03722 PF00082 Subtilase family J171_03722 PF04151 Bacterial pre-peptidase C-terminal domain J171_03723 PF13018 Extended Signal Peptide of Type V secretion system J171_03723 PF05658 Head domain of trimeric autotransporter adhesin J171_03723 PF05662 Coiled stalk of trimeric autotransporter adhesin J171_03723 PF03895 YadA-like membrane anchor domain J171_03724 PF04151 Bacterial pre-peptidase C-terminal domain J171_03724 PF00082 Subtilase family J171_03725 PF05658 Head domain of trimeric autotransporter adhesin J171_03725 PF03895 YadA-like membrane anchor domain J171_03725 PF13018 Extended Signal Peptide of Type V secretion system J171_03725 PF05662 Coiled stalk of trimeric autotransporter adhesin J171_03726 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal J171_03726 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J171_03726 PF02769 AIR synthase related protein, C-terminal domain J171_03727 PF10411 Disulfide bond isomerase protein N-terminus J171_03727 PF13098 Thioredoxin-like domain J171_03728 PF02899 Phage integrase, N-terminal SAM-like domain J171_03728 PF00589 Phage integrase family J171_03731 PF03739 Lipopolysaccharide export system permease LptF/LptG J171_03733 PF00883 Cytosol aminopeptidase family, catalytic domain J171_03733 PF02789 Cytosol aminopeptidase family, N-terminal domain J171_03736 PF08264 Anticodon-binding domain of tRNA J171_03736 PF10458 Valyl tRNA synthetase tRNA binding arm J171_03736 PF00133 tRNA synthetases class I (I, L, M and V) J171_03737 PF00593 TonB dependent receptor J171_03737 PF07715 TonB-dependent Receptor Plug Domain J171_03738 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J171_03738 PF01464 Transglycosylase SLT domain J171_03739 PF00544 Pectate lyase J171_03742 PF01066 CDP-alcohol phosphatidyltransferase J171_03744 PF04073 Aminoacyl-tRNA editing domain J171_03744 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J171_03744 PF03129 Anticodon binding domain J171_03745 PF00816 H-NS histone family J171_03747 PF02405 Permease MlaE J171_03748 PF00005 ABC transporter J171_03749 PF02470 MlaD protein J171_03749 PF03886 ABC-type transport auxiliary lipoprotein component J171_03753 PF14307 Glycosyltransferase WbsX J171_03753 PF05045 Rhamnan synthesis protein F J171_03754 PF01144 Coenzyme A transferase J171_03755 PF01144 Coenzyme A transferase J171_03756 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J171_03756 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J171_03756 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J171_03756 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J171_03757 PF01050 Mannose-6-phosphate isomerase J171_03757 PF00483 Nucleotidyl transferase J171_03758 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J171_03758 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J171_03758 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J171_03759 PF04321 RmlD substrate binding domain J171_03760 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase J171_03761 PF00483 Nucleotidyl transferase J171_03762 PF16363 GDP-mannose 4,6 dehydratase J171_03763 PF01012 Electron transfer flavoprotein domain J171_03764 PF01012 Electron transfer flavoprotein domain J171_03764 PF00766 Electron transfer flavoprotein FAD-binding domain J171_03766 PF01040 UbiA prenyltransferase family J171_03767 PF04030 D-arabinono-1,4-lactone oxidase J171_03767 PF01565 FAD binding domain J171_03768 PF00106 short chain dehydrogenase J171_03770 PF01370 NAD dependent epimerase/dehydratase family J171_03771 PF07992 Pyridine nucleotide-disulphide oxidoreductase J171_03771 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J171_03776 PF00535 Glycosyl transferase family 2 J171_03778 PF14524 Wzt C-terminal domain J171_03778 PF00005 ABC transporter J171_03780 PF01053 Cys/Met metabolism PLP-dependent enzyme J171_03781 PF00571 CBS domain J171_03781 PF00291 Pyridoxal-phosphate dependent enzyme J171_03785 PF00437 Type II/IV secretion system protein J171_03786 PF02798 Glutathione S-transferase, N-terminal domain J171_03786 PF14497 Glutathione S-transferase, C-terminal domain J171_03788 PF00270 DEAD/DEAH box helicase J171_03788 PF00271 Helicase conserved C-terminal domain J171_03791 PF07715 TonB-dependent Receptor Plug Domain J171_03791 PF00593 TonB dependent receptor J171_03792 PF01242 6-pyruvoyl tetrahydropterin synthase J171_03795 PF13185 GAF domain J171_03797 PF00756 Putative esterase J171_03798 PF07715 TonB-dependent Receptor Plug Domain J171_03798 PF00593 TonB dependent receptor J171_03799 PF13419 Haloacid dehalogenase-like hydrolase J171_03800 PF00817 impB/mucB/samB family J171_03800 PF11799 impB/mucB/samB family C-terminal domain J171_03801 PF07977 FabA-like domain J171_03802 PF00109 Beta-ketoacyl synthase, N-terminal domain J171_03802 PF02801 Beta-ketoacyl synthase, C-terminal domain J171_03804 PF01432 Peptidase family M3 J171_03807 PF07731 Multicopper oxidase J171_03807 PF07732 Multicopper oxidase J171_03807 PF00394 Multicopper oxidase J171_03808 PF05275 Copper resistance protein B precursor (CopB) J171_03809 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J171_03815 PF01380 SIS domain J171_03816 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J171_03817 PF00005 ABC transporter J171_03817 PF02687 FtsX-like permease family J171_03817 PF12704 MacB-like periplasmic core domain J171_03818 PF02687 FtsX-like permease family J171_03818 PF00005 ABC transporter J171_03818 PF12704 MacB-like periplasmic core domain J171_03819 PF12704 MacB-like periplasmic core domain J171_03819 PF02687 FtsX-like permease family J171_03821 PF00158 Sigma-54 interaction domain J171_03821 PF00072 Response regulator receiver domain J171_03822 PF14602 Hexapeptide repeat of succinyl-transferase J171_03822 PF12804 MobA-like NTP transferase domain J171_03822 PF00132 Bacterial transferase hexapeptide (six repeats) J171_03825 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J171_03825 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J171_03826 PF02874 ATP synthase alpha/beta family, beta-barrel domain J171_03826 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J171_03827 PF00231 ATP synthase J171_03828 PF00306 ATP synthase alpha/beta chain, C terminal domain J171_03828 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J171_03828 PF02874 ATP synthase alpha/beta family, beta-barrel domain J171_03829 PF00213 ATP synthase delta (OSCP) subunit J171_03830 PF00430 ATP synthase B/B' CF(0) J171_03831 PF00137 ATP synthase subunit C J171_03832 PF00119 ATP synthase A chain J171_03836 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J171_03836 PF07992 Pyridine nucleotide-disulphide oxidoreductase J171_03838 PF02817 e3 binding domain J171_03838 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J171_03838 PF00364 Biotin-requiring enzyme J171_03844 PF03180 NLPA lipoprotein J171_03845 PF00528 Binding-protein-dependent transport system inner membrane component J171_03846 PF09383 NIL domain J171_03846 PF00005 ABC transporter J171_03847 PF00892 EamA-like transporter family J171_03848 PF04461 Protein of unknown function (DUF520) J171_03850 PF18415 Histidine kinase receptor ArcB trans-membrane domain J171_03850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_03850 PF00989 PAS fold J171_03850 PF01627 Hpt domain J171_03850 PF00512 His Kinase A (phospho-acceptor) domain J171_03850 PF00072 Response regulator receiver domain J171_03854 PF13419 Haloacid dehalogenase-like hydrolase J171_03855 PF01479 S4 domain J171_03855 PF00849 RNA pseudouridylate synthase J171_03856 PF08468 Methyltransferase small domain N-terminal J171_03856 PF05175 Methyltransferase small domain J171_03858 PF07995 Glucose / Sorbosone dehydrogenase J171_03860 PF00989 PAS fold J171_03860 PF00512 His Kinase A (phospho-acceptor) domain J171_03860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_03864 PF01168 Alanine racemase, N-terminal domain J171_03864 PF00842 Alanine racemase, C-terminal domain J171_03865 PF01266 FAD dependent oxidoreductase J171_03866 PF01037 Lrp/AsnC ligand binding domain J171_03868 PF01641 SelR domain J171_03870 PF01618 MotA/TolQ/ExbB proton channel family J171_03871 PF00691 OmpA family J171_03871 PF13677 Membrane MotB of proton-channel complex MotA/MotB J171_03876 PF01061 ABC-2 type transporter J171_03877 PF00005 ABC transporter J171_03878 PF00999 Sodium/hydrogen exchanger family J171_03879 PF02469 Fasciclin domain J171_03880 PF03167 Uracil DNA glycosylase superfamily J171_03882 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J171_03884 PF03466 LysR substrate binding domain J171_03884 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_03885 PF03358 NADPH-dependent FMN reductase J171_03886 PF00248 Aldo/keto reductase family J171_03888 PF05649 Peptidase family M13 J171_03888 PF01431 Peptidase family M13 J171_03892 PF13520 Amino acid permease J171_03894 PF04397 LytTr DNA-binding domain J171_03894 PF00072 Response regulator receiver domain J171_03895 PF06580 Histidine kinase J171_03895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_03895 PF00672 HAMP domain J171_03895 PF02743 Cache domain J171_03898 PF05974 Domain of unknown function (DUF892) J171_03899 PF05067 Manganese containing catalase J171_03902 PF01339 CheB methylesterase J171_03902 PF03705 CheR methyltransferase, all-alpha domain J171_03902 PF08448 PAS fold J171_03902 PF01739 CheR methyltransferase, SAM binding domain J171_03905 PF00158 Sigma-54 interaction domain J171_03905 PF00072 Response regulator receiver domain J171_03905 PF02954 Bacterial regulatory protein, Fis family J171_03907 PF01654 Cytochrome bd terminal oxidase subunit I J171_03908 PF02322 Cytochrome bd terminal oxidase subunit II J171_03912 PF16363 GDP-mannose 4,6 dehydratase J171_03914 PF03275 UDP-galactopyranose mutase J171_03916 PF00005 ABC transporter J171_03916 PF00664 ABC transporter transmembrane region J171_03919 PF13823 Alcohol dehydrogenase GroES-associated J171_03919 PF08240 Alcohol dehydrogenase GroES-like domain J171_03919 PF00107 Zinc-binding dehydrogenase J171_03928 PF00593 TonB dependent receptor J171_03928 PF07715 TonB-dependent Receptor Plug Domain J171_03931 PF00005 ABC transporter J171_03933 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_03933 PF03466 LysR substrate binding domain J171_03934 PF01042 Endoribonuclease L-PSP J171_03936 PF01527 Transposase J171_03940 PF00672 HAMP domain J171_03940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J171_03940 PF02203 Tar ligand binding domain homologue J171_03943 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_03943 PF03466 LysR substrate binding domain J171_03944 PF02525 Flavodoxin-like fold J171_03953 PF00557 Metallopeptidase family M24 J171_03958 PF04545 Sigma-70, region 4 J171_03958 PF04546 Sigma-70, non-essential region J171_03958 PF04542 Sigma-70 region 2 J171_03958 PF03979 Sigma-70 factor, region 1.1 J171_03958 PF00140 Sigma-70 factor, region 1.2 J171_03958 PF04539 Sigma-70 region 3 J171_03959 PF02580 D-Tyr-tRNA(Tyr) deacylase J171_03960 PF03279 Bacterial lipid A biosynthesis acyltransferase J171_03962 PF00925 GTP cyclohydrolase II J171_03966 PF00535 Glycosyl transferase family 2 J171_03969 PF01029 NusB family J171_03969 PF01189 16S rRNA methyltransferase RsmB/F J171_03970 PF00551 Formyl transferase J171_03970 PF02911 Formyl transferase, C-terminal domain J171_03971 PF01327 Polypeptide deformylase J171_03972 PF01476 LysM domain J171_03973 PF02481 DNA recombination-mediator protein A J171_03973 PF17782 DprA winged helix domain J171_03974 PF04361 Protein of unknown function (DUF494) J171_03975 PF00114 Pilin (bacterial filament) J171_03975 PF07963 Prokaryotic N-terminal methylation motif J171_03977 PF13368 Topoisomerase C-terminal repeat J171_03977 PF01131 DNA topoisomerase J171_03977 PF01751 Toprim domain J171_03978 PF01300 Telomere recombination J171_03983 PF01343 Peptidase family S49 J171_03984 PF01554 MatE J171_03988 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J171_03988 PF18074 Primosomal protein N C-terminal domain J171_03988 PF17764 3′ DNA-binding domain (3′BD) J171_03988 PF00271 Helicase conserved C-terminal domain J171_03988 PF00270 DEAD/DEAH box helicase J171_03989 PF00043 Glutathione S-transferase, C-terminal domain J171_03989 PF13417 Glutathione S-transferase, N-terminal domain J171_03992 PF07992 Pyridine nucleotide-disulphide oxidoreductase J171_03993 PF03458 UPF0126 domain J171_03994 PF04545 Sigma-70, region 4 J171_03994 PF04542 Sigma-70 region 2 J171_03995 PF03167 Uracil DNA glycosylase superfamily J171_03996 PF01339 CheB methylesterase J171_03996 PF00072 Response regulator receiver domain J171_03997 PF18075 FtsX extracellular domain J171_03998 PF00005 ABC transporter J171_03999 PF00270 DEAD/DEAH box helicase J171_03999 PF00271 Helicase conserved C-terminal domain J171_03999 PF12300 ATP-dependent RNA helicase RhlB J171_04000 PF00085 Thioredoxin J171_04001 PF07497 Rho termination factor, RNA-binding domain J171_04001 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J171_04001 PF07498 Rho termination factor, N-terminal domain J171_04002 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) J171_04003 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_04003 PF03466 LysR substrate binding domain J171_04005 PF03971 Monomeric isocitrate dehydrogenase J171_04008 PF09704 CRISPR-associated protein (Cas_Cas5) J171_04013 PF01867 CRISPR associated protein Cas1 J171_04014 PF09827 CRISPR associated protein Cas2 J171_04016 PF04972 BON domain J171_04016 PF01476 LysM domain J171_04017 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J171_04017 PF14489 QueF-like protein J171_04018 PF07687 Peptidase dimerisation domain J171_04018 PF01546 Peptidase family M20/M25/M40 J171_04019 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J171_04020 PF00873 AcrB/AcrD/AcrF family J171_04021 PF00873 AcrB/AcrD/AcrF family J171_04022 PF07063 Domain of unknown function (DUF1338) J171_04030 PF01427 D-ala-D-ala dipeptidase J171_04031 PF01510 N-acetylmuramoyl-L-alanine amidase J171_04033 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J171_04033 PF13378 Enolase C-terminal domain-like J171_04035 PF13520 Amino acid permease J171_04038 PF05360 yiaA/B two helix domain J171_04039 PF07995 Glucose / Sorbosone dehydrogenase J171_04040 PF01915 Glycosyl hydrolase family 3 C-terminal domain J171_04040 PF00933 Glycosyl hydrolase family 3 N terminal domain J171_04040 PF14310 Fibronectin type III-like domain J171_04041 PF02152 Dihydroneopterin aldolase J171_04042 PF00814 Glycoprotease family J171_04043 PF01165 Ribosomal protein S21 J171_04044 PF09424 Yqey-like protein J171_04045 PF03631 Virulence factor BrkB J171_04046 PF01807 CHC2 zinc finger J171_04046 PF08275 DNA primase catalytic core, N-terminal domain J171_04046 PF08278 DNA primase DnaG DnaB-binding J171_04046 PF10410 DnaB-helicase binding domain of primase J171_04047 PF13593 SBF-like CPA transporter family (DUF4137) J171_04049 PF01040 UbiA prenyltransferase family J171_04054 PF00510 Cytochrome c oxidase subunit III J171_04055 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 J171_04057 PF00115 Cytochrome C and Quinol oxidase polypeptide I J171_04058 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J171_04058 PF02790 Cytochrome C oxidase subunit II, transmembrane domain J171_04060 PF01619 Proline dehydrogenase J171_04060 PF14850 DNA-binding domain of Proline dehydrogenase J171_04060 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J171_04060 PF00171 Aldehyde dehydrogenase family J171_04068 PF00579 tRNA synthetases class I (W and Y) J171_04069 PF01551 Peptidase family M23 J171_04069 PF04225 Opacity-associated protein A LysM-like domain J171_04070 PF03702 Anhydro-N-acetylmuramic acid kinase J171_04072 PF07690 Major Facilitator Superfamily J171_04073 PF03372 Endonuclease/Exonuclease/phosphatase family J171_04074 PF00156 Phosphoribosyl transferase domain J171_04076 PF13614 AAA domain J171_04077 PF17762 HTH domain found in ParB protein J171_04077 PF02195 ParB-like nuclease domain J171_04079 PF01370 NAD dependent epimerase/dehydratase family J171_04080 PF00535 Glycosyl transferase family 2 J171_04083 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J171_04083 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J171_04083 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J171_04083 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J171_04084 PF00692 dUTPase J171_04085 PF04127 DNA / pantothenate metabolism flavoprotein J171_04085 PF02441 Flavoprotein J171_04086 PF04002 RadC-like JAB domain J171_04087 PF00750 tRNA synthetases class I (R) J171_04087 PF05746 DALR anticodon binding domain J171_04087 PF03485 Arginyl tRNA synthetase N terminal domain J171_04090 PF00106 short chain dehydrogenase J171_04091 PF01757 Acyltransferase family J171_04092 PF03033 Glycosyltransferase family 28 N-terminal domain J171_04093 PF00501 AMP-binding enzyme J171_04093 PF00668 Condensation domain J171_04093 PF00550 Phosphopantetheine attachment site J171_04093 PF00975 Thioesterase domain J171_04093 PF13193 AMP-binding enzyme C-terminal domain J171_04094 PF17944 Arginine decarboxylase C-terminal helical extension J171_04094 PF17810 Arginine decarboxylase helical bundle domain J171_04094 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J171_04095 PF17284 Spermidine synthase tetramerisation domain J171_04100 PF00543 Nitrogen regulatory protein P-II J171_04101 PF04380 Membrane fusogenic activity J171_04102 PF13335 Magnesium chelatase, subunit ChlI C-terminal J171_04102 PF01078 Magnesium chelatase, subunit ChlI J171_04108 PF13276 HTH-like domain J171_04108 PF13683 Integrase core domain J171_04112 PF13361 UvrD-like helicase C-terminal domain J171_04112 PF00580 UvrD/REP helicase N-terminal domain J171_04112 PF00570 HRDC domain J171_04115 PF01527 Transposase J171_04116 PF02463 RecF/RecN/SMC N terminal domain J171_04125 PF13335 Magnesium chelatase, subunit ChlI C-terminal J171_04125 PF01078 Magnesium chelatase, subunit ChlI J171_04128 PF00563 EAL domain J171_04128 PF12792 CSS motif domain associated with EAL J171_04129 PF00487 Fatty acid desaturase J171_04130 PF00111 2Fe-2S iron-sulfur cluster binding domain J171_04130 PF00175 Oxidoreductase NAD-binding domain J171_04130 PF00970 Oxidoreductase FAD-binding domain J171_04131 PF00440 Bacterial regulatory proteins, tetR family J171_04137 PF01139 tRNA-splicing ligase RtcB J171_04145 PF01370 NAD dependent epimerase/dehydratase family J171_04145 PF08338 Domain of unknown function (DUF1731) J171_04146 PF00486 Transcriptional regulatory protein, C terminal J171_04146 PF00072 Response regulator receiver domain J171_04147 PF08521 Two-component sensor kinase N-terminal J171_04147 PF00512 His Kinase A (phospho-acceptor) domain J171_04147 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_04151 PF00595 PDZ domain J171_04155 PF01594 AI-2E family transporter J171_04156 PF13419 Haloacid dehalogenase-like hydrolase J171_04157 PF02789 Cytosol aminopeptidase family, N-terminal domain J171_04157 PF00883 Cytosol aminopeptidase family, catalytic domain J171_04159 PF04542 Sigma-70 region 2 J171_04159 PF08281 Sigma-70, region 4 J171_04160 PF00199 Catalase J171_04163 PF00072 Response regulator receiver domain J171_04163 PF00196 Bacterial regulatory proteins, luxR family J171_04164 PF07730 Histidine kinase J171_04165 PF13533 Biotin-lipoyl like J171_04166 PF00005 ABC transporter J171_04170 PF00892 EamA-like transporter family J171_04171 PF00892 EamA-like transporter family J171_04172 PF00892 EamA-like transporter family J171_04175 PF00753 Metallo-beta-lactamase superfamily J171_04176 PF00579 tRNA synthetases class I (W and Y) J171_04177 PF05532 CsbD-like J171_04180 PF00491 Arginase family J171_04185 PF02223 Thymidylate kinase J171_04188 PF03309 Type III pantothenate kinase J171_04189 PF08279 HTH domain J171_04189 PF02237 Biotin protein ligase C terminal domain J171_04189 PF03099 Biotin/lipoate A/B protein ligase family J171_04191 PF06167 Glucose-regulated metallo-peptidase M90 J171_04194 PF00512 His Kinase A (phospho-acceptor) domain J171_04194 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_04194 PF00672 HAMP domain J171_04195 PF00486 Transcriptional regulatory protein, C terminal J171_04195 PF00072 Response regulator receiver domain J171_04197 PF01207 Dihydrouridine synthase (Dus) J171_04200 PF06628 Catalase-related immune-responsive J171_04200 PF00199 Catalase J171_04201 PF06733 DEAD_2 J171_04201 PF13307 Helicase C-terminal domain J171_04204 PF01488 Shikimate / quinate 5-dehydrogenase J171_04204 PF08501 Shikimate dehydrogenase substrate binding domain J171_04204 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J171_04206 PF00258 Flavodoxin J171_04206 PF00667 FAD binding domain J171_04206 PF00175 Oxidoreductase NAD-binding domain J171_04208 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_04208 PF03466 LysR substrate binding domain J171_04210 PF00490 Delta-aminolevulinic acid dehydratase J171_04214 PF00326 Prolyl oligopeptidase family J171_04214 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J171_04215 PF00043 Glutathione S-transferase, C-terminal domain J171_04215 PF02798 Glutathione S-transferase, N-terminal domain J171_04219 PF04820 Tryptophan halogenase J171_04222 PF00005 ABC transporter J171_04224 PF01381 Helix-turn-helix J171_04226 PF01229 Glycosyl hydrolases family 39 J171_04227 PF02583 Metal-sensitive transcriptional repressor J171_04228 PF16916 Dimerisation domain of Zinc Transporter J171_04228 PF01545 Cation efflux family J171_04230 PF07715 TonB-dependent Receptor Plug Domain J171_04230 PF00593 TonB dependent receptor J171_04232 PF01965 DJ-1/PfpI family J171_04232 PF12833 Helix-turn-helix domain J171_04233 PF00111 2Fe-2S iron-sulfur cluster binding domain J171_04233 PF00970 Oxidoreductase FAD-binding domain J171_04233 PF00175 Oxidoreductase NAD-binding domain J171_04234 PF00005 ABC transporter J171_04235 PF01061 ABC-2 type transporter J171_04238 PF08546 Ketopantoate reductase PanE/ApbA C terminal J171_04238 PF02558 Ketopantoate reductase PanE/ApbA J171_04244 PF00268 Ribonucleotide reductase, small chain J171_04245 PF03477 ATP cone domain J171_04245 PF00317 Ribonucleotide reductase, all-alpha domain J171_04245 PF02867 Ribonucleotide reductase, barrel domain J171_04247 PF00583 Acetyltransferase (GNAT) family J171_04247 PF13380 CoA binding domain J171_04247 PF13607 Succinyl-CoA ligase like flavodoxin domain J171_04248 PF00571 CBS domain J171_04248 PF01769 Divalent cation transporter J171_04248 PF03448 MgtE intracellular N domain J171_04249 PF00194 Eukaryotic-type carbonic anhydrase J171_04250 PF00999 Sodium/hydrogen exchanger family J171_04250 PF02254 TrkA-N domain J171_04251 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J171_04251 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J171_04252 PF00723 Glycosyl hydrolases family 15 J171_04255 PF05166 YcgL domain J171_04256 PF00109 Beta-ketoacyl synthase, N-terminal domain J171_04256 PF02801 Beta-ketoacyl synthase, C-terminal domain J171_04258 PF00535 Glycosyl transferase family 2 J171_04269 PF07977 FabA-like domain J171_04270 PF01553 Acyltransferase J171_04272 PF00550 Phosphopantetheine attachment site J171_04273 PF04820 Tryptophan halogenase J171_04277 PF00326 Prolyl oligopeptidase family J171_04277 PF07676 WD40-like Beta Propeller Repeat J171_04280 PF01218 Coproporphyrinogen III oxidase J171_04281 PF01612 3'-5' exonuclease J171_04281 PF00476 DNA polymerase family A J171_04281 PF01367 5'-3' exonuclease, C-terminal SAM fold J171_04281 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J171_04287 PF03793 PASTA domain J171_04287 PF00069 Protein kinase domain J171_04295 PF04717 Type VI secretion system, phage-baseplate injector J171_04298 PF03793 PASTA domain J171_04298 PF00069 Protein kinase domain J171_04300 PF08281 Sigma-70, region 4 J171_04300 PF04542 Sigma-70 region 2 J171_04303 PF00328 Histidine phosphatase superfamily (branch 2) J171_04310 PF00004 ATPase family associated with various cellular activities (AAA) J171_04310 PF07724 AAA domain (Cdc48 subfamily) J171_04310 PF10431 C-terminal, D2-small domain, of ClpB protein J171_04310 PF17871 AAA lid domain J171_04315 PF05638 Type VI secretion system effector, Hcp J171_04320 PF14602 Hexapeptide repeat of succinyl-transferase J171_04320 PF12464 Maltose acetyltransferase J171_04321 PF13361 UvrD-like helicase C-terminal domain J171_04321 PF00580 UvrD/REP helicase N-terminal domain J171_04323 PF13091 PLD-like domain J171_04323 PF13396 Phospholipase_D-nuclease N-terminal J171_04324 PF03466 LysR substrate binding domain J171_04324 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_04325 PF03737 Aldolase/RraA J171_04326 PF04303 PrpF protein J171_04327 PF04909 Amidohydrolase J171_04328 PF00471 Ribosomal protein L33 J171_04329 PF00830 Ribosomal L28 family J171_04330 PF00873 AcrB/AcrD/AcrF family J171_04331 PF13533 Biotin-lipoyl like J171_04335 PF02527 rRNA small subunit methyltransferase G J171_04336 PF09423 PhoD-like phosphatase J171_04336 PF16655 PhoD-like phosphatase, N-terminal domain J171_04338 PF09423 PhoD-like phosphatase J171_04338 PF16655 PhoD-like phosphatase, N-terminal domain J171_04339 PF01648 4'-phosphopantetheinyl transferase superfamily J171_04340 PF04226 Transglycosylase associated protein J171_04342 PF03372 Endonuclease/Exonuclease/phosphatase family J171_04344 PF00480 ROK family J171_04346 PF09312 SurA N-terminal domain J171_04348 PF00474 Sodium:solute symporter family J171_04349 PF04341 Protein of unknown function, DUF485 J171_04351 PF16177 Acetyl-coenzyme A synthetase N-terminus J171_04351 PF00501 AMP-binding enzyme J171_04351 PF13193 AMP-binding enzyme C-terminal domain J171_04352 PF00072 Response regulator receiver domain J171_04352 PF00196 Bacterial regulatory proteins, luxR family J171_04357 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J171_04357 PF04616 Glycosyl hydrolases family 43 J171_04358 PF00248 Aldo/keto reductase family J171_04361 PF01557 Fumarylacetoacetate (FAA) hydrolase family J171_04362 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J171_04362 PF13378 Enolase C-terminal domain-like J171_04364 PF05336 L-rhamnose mutarotase J171_04365 PF07690 Major Facilitator Superfamily J171_04366 PF09339 IclR helix-turn-helix domain J171_04366 PF01614 Bacterial transcriptional regulator J171_04367 PF02659 Putative manganese efflux pump J171_04368 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_04368 PF00512 His Kinase A (phospho-acceptor) domain J171_04370 PF06165 Glycosyltransferase family 36 J171_04370 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J171_04373 PF13360 PQQ-like domain J171_04373 PF13570 PQQ-like domain J171_04373 PF01011 PQQ enzyme repeat J171_04377 PF04357 TamB, inner membrane protein subunit of TAM complex J171_04378 PF01103 Surface antigen J171_04378 PF17243 POTRA domain TamA domain 1 J171_04381 PF01527 Transposase J171_04383 PF00005 ABC transporter J171_04383 PF03412 Peptidase C39 family J171_04383 PF00664 ABC transporter transmembrane region J171_04385 PF02092 Glycyl-tRNA synthetase beta subunit J171_04385 PF05746 DALR anticodon binding domain J171_04386 PF02091 Glycyl-tRNA synthetase alpha subunit J171_04387 PF00437 Type II/IV secretion system protein J171_04387 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J171_04389 PF00958 GMP synthase C terminal domain J171_04389 PF00117 Glutamine amidotransferase class-I J171_04391 PF00902 Sec-independent protein translocase protein (TatC) J171_04392 PF02416 mttA/Hcf106 family J171_04393 PF02416 mttA/Hcf106 family J171_04395 PF00762 Ferrochelatase J171_04396 PF12697 Alpha/beta hydrolase family J171_04398 PF04381 Putative exonuclease, RdgC J171_04399 PF01171 PP-loop family J171_04401 PF00356 Bacterial regulatory proteins, lacI family J171_04402 PF03648 Glycosyl hydrolase family 67 N-terminus J171_04402 PF07488 Glycosyl hydrolase family 67 middle domain J171_04402 PF07477 Glycosyl hydrolase family 67 C-terminus J171_04404 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J171_04404 PF13378 Enolase C-terminal domain-like J171_04405 PF04616 Glycosyl hydrolases family 43 J171_04405 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J171_04406 PF01915 Glycosyl hydrolase family 3 C-terminal domain J171_04406 PF00933 Glycosyl hydrolase family 3 N terminal domain J171_04406 PF14310 Fibronectin type III-like domain J171_04406 PF07691 PA14 domain J171_04407 PF01232 Mannitol dehydrogenase Rossmann domain J171_04407 PF08125 Mannitol dehydrogenase C-terminal domain J171_04412 PF00171 Aldehyde dehydrogenase family J171_04415 PF00202 Aminotransferase class-III J171_04416 PF00202 Aminotransferase class-III J171_04418 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J171_04418 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J171_04421 PF08450 SMP-30/Gluconolactonase/LRE-like region J171_04422 PF00331 Glycosyl hydrolase family 10 J171_04423 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J171_04423 PF00703 Glycosyl hydrolases family 2 J171_04423 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J171_04423 PF02837 Glycosyl hydrolases family 2, sugar binding domain J171_04423 PF16355 Domain of unknown function (DUF4982) J171_04424 PF02614 Glucuronate isomerase J171_04425 PF03422 Carbohydrate binding module (family 6) J171_04425 PF00331 Glycosyl hydrolase family 10 J171_04425 PF00553 Cellulose binding domain J171_04427 PF00331 Glycosyl hydrolase family 10 J171_04427 PF03422 Carbohydrate binding module (family 6) J171_04427 PF00553 Cellulose binding domain J171_04431 PF04616 Glycosyl hydrolases family 43 J171_04441 PF00109 Beta-ketoacyl synthase, N-terminal domain J171_04441 PF14765 Polyketide synthase dehydratase J171_04441 PF16197 Ketoacyl-synthetase C-terminal extension J171_04441 PF08659 KR domain J171_04441 PF08240 Alcohol dehydrogenase GroES-like domain J171_04441 PF00698 Acyl transferase domain J171_04441 PF00107 Zinc-binding dehydrogenase J171_04441 PF00550 Phosphopantetheine attachment site J171_04441 PF02801 Beta-ketoacyl synthase, C-terminal domain J171_04442 PF01553 Acyltransferase J171_04444 PF00356 Bacterial regulatory proteins, lacI family J171_04447 PF04820 Tryptophan halogenase J171_04448 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J171_04449 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) J171_04451 PF04337 Protein of unknown function, DUF480 J171_04454 PF13361 UvrD-like helicase C-terminal domain J171_04454 PF00580 UvrD/REP helicase N-terminal domain J171_04455 PF00265 Thymidine kinase J171_04456 PF01590 GAF domain J171_04456 PF00360 Phytochrome region J171_04456 PF00512 His Kinase A (phospho-acceptor) domain J171_04456 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J171_04456 PF08446 PAS fold J171_04457 PF04349 Periplasmic glucan biosynthesis protein, MdoG J171_04459 PF06827 Zinc finger found in FPG and IleRS J171_04459 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J171_04459 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J171_04466 PF03594 Benzoate membrane transport protein J171_04467 PF13426 PAS domain J171_04467 PF01590 GAF domain J171_04467 PF00360 Phytochrome region J171_04467 PF08446 PAS fold J171_04468 PF01126 Heme oxygenase J171_04469 PF07690 Major Facilitator Superfamily J171_04470 PF01263 Aldose 1-epimerase J171_04472 PF02810 SEC-C motif J171_04473 PF01925 Sulfite exporter TauE/SafE J171_04477 PF01227 GTP cyclohydrolase I J171_04479 PF07869 Protein of unknown function (DUF1656) J171_04480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J171_04480 PF00529 HlyD membrane-fusion protein of T1SS J171_04481 PF02321 Outer membrane efflux protein J171_04482 PF04632 Fusaric acid resistance protein family J171_04483 PF00083 Sugar (and other) transporter J171_04484 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family J171_04485 PF13396 Phospholipase_D-nuclease N-terminal J171_04485 PF13091 PLD-like domain J171_04490 PF01850 PIN domain J171_04495 PF00849 RNA pseudouridylate synthase J171_04497 PF01527 Transposase J171_04501 PF02785 Biotin carboxylase C-terminal domain J171_04501 PF00289 Biotin carboxylase, N-terminal domain J171_04501 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J171_04502 PF01425 Amidase J171_04509 PF13538 UvrD-like helicase C-terminal domain J171_04512 PF13361 UvrD-like helicase C-terminal domain J171_04512 PF00580 UvrD/REP helicase N-terminal domain J171_04512 PF12705 PD-(D/E)XK nuclease superfamily J171_04513 PF17946 RecC C-terminal domain J171_04515 PF00005 ABC transporter J171_04516 PF02405 Permease MlaE J171_04517 PF02470 MlaD protein J171_04518 PF05494 MlaC protein J171_04520 PF04333 MlaA lipoprotein J171_04522 PF00255 Glutathione peroxidase J171_04524 PF02646 RmuC family J171_04525 PF08240 Alcohol dehydrogenase GroES-like domain J171_04525 PF00107 Zinc-binding dehydrogenase J171_04526 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J171_04526 PF03466 LysR substrate binding domain J171_04528 PF13417 Glutathione S-transferase, N-terminal domain J171_04528 PF00043 Glutathione S-transferase, C-terminal domain J171_04530 PF13520 Amino acid permease J171_04531 PF17678 Glycosyl hydrolase family 92 N-terminal domain J171_04531 PF07971 Glycosyl hydrolase family 92 J171_04532 PF10947 Protein of unknown function (DUF2628) J171_04533 PF00990 Diguanylate cyclase, GGDEF domain J171_04534 PF13556 PucR C-terminal helix-turn-helix domain J171_04534 PF17853 GGDEF-like domain J171_04534 PF05651 Putative sugar diacid recognition J171_04535 PF02595 Glycerate kinase family J171_04536 PF07690 Major Facilitator Superfamily J171_04539 PF17785 PUA-like domain J171_04539 PF10672 S-adenosylmethionine-dependent methyltransferase J171_04541 PF03741 Integral membrane protein TerC family J171_04542 PF01694 Rhomboid family J171_04543 PF03009 Glycerophosphoryl diester phosphodiesterase family J171_04545 PF01569 PAP2 superfamily J171_04546 PF10396 GTP-binding protein TrmE N-terminus J171_04546 PF01926 50S ribosome-binding GTPase J171_04546 PF12631 MnmE helical domain J171_04547 PF01522 Polysaccharide deacetylase J171_04548 PF14849 YidC periplasmic domain J171_04548 PF02096 60Kd inner membrane protein J171_04549 PF00825 Ribonuclease P J171_04550 PF00468 Ribosomal protein L34