J171_00001 SM00966 SpoVT / AbrB like domain J171_00023 SM00857 Resolvase, N terminal domain J171_00030 SM00670 Large family of predicted nucleotide-binding domains J171_00032 SM00857 Resolvase, N terminal domain J171_00088 SM00470 ParB-like nuclease domain J171_00095 SM00857 Resolvase, N terminal domain J171_00101 SM00670 Large family of predicted nucleotide-binding domains J171_00103 SM00857 Resolvase, N terminal domain J171_00104 SM00382 ATPases associated with a variety of cellular activities J171_00104 SM00760 Bacterial dnaA protein helix-turn-helix domain J171_00105 SM00480 DNA polymerase III beta subunit J171_00108 SM00387 Histidine kinase-like ATPases J171_00108 SM00433 TopoisomeraseII J171_00111 SM00028 Tetratricopeptide repeats J171_00118 SM00155 Phospholipase D. Active site motifs. J171_00121 SM00729 Elongator protein 3, MiaB family, Radical SAM J171_00127 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J171_00127 SM00245 tail specific protease J171_00135 SM00829 Enoylreductase J171_00160 SM00382 ATPases associated with a variety of cellular activities J171_00184 SM00487 DEAD-like helicases superfamily J171_00184 SM00490 helicase superfamily c-terminal domain J171_00188 SM00822 J171_00188 J171_00189 SM00822 J171_00189 J171_00238 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen J171_00242 SM00421 helix_turn_helix, Lux Regulon J171_00242 SM00448 cheY-homologous receiver domain J171_00246 SM00862 Transcriptional regulatory protein, C terminal J171_00262 SM00642 Alpha-amylase domain J171_00263 SM00642 Alpha-amylase domain J171_00264 SM00642 Alpha-amylase domain J171_00274 SM00354 helix_turn _helix lactose operon repressor J171_00282 SM00344 helix_turn_helix ASNC type J171_00286 SM00382 ATPases associated with a variety of cellular activities J171_00289 SM00382 ATPases associated with a variety of cellular activities J171_00295 SM00530 Helix-turn-helix XRE-family like proteins J171_00300 SM00855 Phosphoglycerate mutase family J171_00301 SM00867 YceI-like domain J171_00302 SM00155 Phospholipase D. Active site motifs. J171_00304 SM00563 Phosphate acyltransferases J171_00307 SM00028 Tetratricopeptide repeats J171_00309 SM00829 Enoylreductase J171_00312 SM01230 J171_00312 J171_00313 SM00938 Nitrogen regulatory protein P-II J171_00315 SM00387 Histidine kinase-like ATPases J171_00315 SM00388 His Kinase A (phosphoacceptor) domain J171_00316 SM00382 ATPases associated with a variety of cellular activities J171_00316 SM00448 cheY-homologous receiver domain J171_00328 SM00450 Rhodanese Homology Domain J171_00333 SM00387 Histidine kinase-like ATPases J171_00333 SM00388 His Kinase A (phosphoacceptor) domain J171_00334 SM00382 ATPases associated with a variety of cellular activities J171_00334 SM00448 cheY-homologous receiver domain J171_00356 SM00563 Phosphate acyltransferases J171_00362 SM00342 helix_turn_helix, arabinose operon control protein J171_00367 SM00100 Cyclic nucleotide-monophosphate binding domain J171_00367 SM00267 diguanylate cyclase J171_00373 SM00878 Biotin carboxylase C-terminal domain J171_00378 SM00953 J171_00378 J171_00386 SM00833 Cobalamin synthesis protein cobW C-terminal domain J171_00391 SM00347 helix_turn_helix multiple antibiotic resistance protein J171_00397 SM00829 Enoylreductase J171_00403 SM00487 DEAD-like helicases superfamily J171_00403 SM00490 helicase superfamily c-terminal domain J171_00403 SM00847 Helicase associated domain (HA2) Add an annotation J171_00428 SM00422 helix_turn_helix, mercury resistance J171_00435 SM00448 cheY-homologous receiver domain J171_00435 SM00862 Transcriptional regulatory protein, C terminal J171_00436 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_00436 SM00387 Histidine kinase-like ATPases J171_00436 SM00388 His Kinase A (phosphoacceptor) domain J171_00462 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J171_00463 SM00347 helix_turn_helix multiple antibiotic resistance protein J171_00467 SM00342 helix_turn_helix, arabinose operon control protein J171_00474 SM00420 helix_turn_helix, Deoxyribose operon repressor J171_00474 SM01134 J171_00474 J171_00477 SM00882 Coenzyme A transferase J171_00478 SM00882 Coenzyme A transferase J171_00482 SM00998 Adenylosuccinate lyase C-terminus J171_00486 SM00346 helix_turn_helix isocitrate lyase regulation J171_00487 SM00090 RIO-like kinase J171_00490 SM01228 J171_00490 J171_00501 SM00729 Elongator protein 3, MiaB family, Radical SAM J171_00501 SM00876 Biotin and Thiamin Synthesis associated domain J171_00506 SM00369 Leucine-rich repeats, typical (most populated) subfamily J171_00526 SM00382 ATPases associated with a variety of cellular activities J171_00538 SM00267 diguanylate cyclase J171_00540 SM00642 Alpha-amylase domain J171_00541 SM00642 Alpha-amylase domain J171_00543 SM00642 Alpha-amylase domain J171_00545 SM00642 Alpha-amylase domain J171_00554 SM00822 J171_00554 J171_00557 SM00487 DEAD-like helicases superfamily J171_00557 SM00490 helicase superfamily c-terminal domain J171_00560 SM00326 Src homology 3 domains J171_00561 SM00861 Transketolase, pyrimidine binding domain J171_00563 SM00237 Domains in Na-Ca exchangers and integrin-beta4 J171_00567 SM00347 helix_turn_helix multiple antibiotic resistance protein J171_00586 SM00271 DnaJ molecular chaperone homology domain J171_00590 SM00046 Diacylglycerol kinase catalytic domain (presumed) J171_00594 SM00903 Flavin reductase like domain J171_00598 SM00100 Cyclic nucleotide-monophosphate binding domain J171_00598 SM00419 helix_turn_helix, cAMP Regulatory protein J171_00608 SM00387 Histidine kinase-like ATPases J171_00608 SM00388 His Kinase A (phosphoacceptor) domain J171_00608 SM00448 cheY-homologous receiver domain J171_00609 SM00052 Putative diguanylate phosphodiesterase J171_00609 SM00267 diguanylate cyclase J171_00609 SM00448 cheY-homologous receiver domain J171_00620 SM00563 Phosphate acyltransferases J171_00624 SM01209 J171_00624 J171_00624 SM01210 J171_00624 J171_00626 SM00798 AICARFT/IMPCHase bienzyme J171_00626 SM00851 MGS-like domain J171_00629 SM00195 Dual specificity phosphatase, catalytic domain J171_00633 SM00563 Phosphate acyltransferases J171_00638 SM00530 Helix-turn-helix XRE-family like proteins J171_00643 SM00878 Biotin carboxylase C-terminal domain J171_00649 SM00342 helix_turn_helix, arabinose operon control protein J171_00651 SM00234 in StAR and phosphatidylcholine transfer protein J171_00655 SM00883 Chaperonin 10 Kd subunit J171_00666 SM00944 Pro-kumamolisin, activation domain J171_00669 SM00867 YceI-like domain J171_00680 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. J171_00682 SM00345 helix_turn_helix gluconate operon transcriptional repressor J171_00682 SM00895 J171_00682 J171_00686 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_00686 SM00331 Sigma factor PP2C-like phosphatases J171_00694 SM00342 helix_turn_helix, arabinose operon control protein J171_00706 SM00267 diguanylate cyclase J171_00711 SM00062 Bacterial periplasmic substrate-binding proteins J171_00720 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain J171_00720 SM01232 J171_00720 J171_00722 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J171_00725 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J171_00725 SM00091 PAS domain J171_00725 SM00267 diguanylate cyclase J171_00726 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_00726 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_00726 SM01049 J171_00726 J171_00727 SM00637 J171_00727 J171_00729 SM00267 diguanylate cyclase J171_00735 SM00448 cheY-homologous receiver domain J171_00735 SM00850 LytTr DNA-binding domain J171_00751 SM00382 ATPases associated with a variety of cellular activities J171_00751 SM01086 C-terminal, D2-small domain, of ClpB protein J171_00757 SM00267 diguanylate cyclase J171_00758 SM01263 J171_00758 J171_00761 SM00564 beta-propeller repeat J171_00762 SM00062 Bacterial periplasmic substrate-binding proteins J171_00762 SM00248 ankyrin repeats J171_00765 SM00829 Enoylreductase J171_00767 SM00382 ATPases associated with a variety of cellular activities J171_00769 SM00268 Actin J171_00774 SM00710 Parallel beta-helix repeats J171_00777 SM00936 Penicillin-binding protein 5, C-terminal domain J171_00781 SM00729 Elongator protein 3, MiaB family, Radical SAM J171_00782 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J171_00782 SM00245 tail specific protease J171_00793 SM01350 J171_00793 J171_00795 SM00749 bacterial OsmY and nodulation domain J171_00796 SM00387 Histidine kinase-like ATPases J171_00796 SM00388 His Kinase A (phosphoacceptor) domain J171_00797 SM00448 cheY-homologous receiver domain J171_00798 SM00387 Histidine kinase-like ATPases J171_00798 SM00388 His Kinase A (phosphoacceptor) domain J171_00798 SM00448 cheY-homologous receiver domain J171_00804 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. J171_00809 SM00382 ATPases associated with a variety of cellular activities J171_00825 SM00345 helix_turn_helix gluconate operon transcriptional repressor J171_00825 SM00866 J171_00825 J171_00827 SM00354 helix_turn _helix lactose operon repressor J171_00841 SM00849 Metallo-beta-lactamase superfamily J171_00842 SM00342 helix_turn_helix, arabinose operon control protein J171_00844 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_00844 SM00387 Histidine kinase-like ATPases J171_00844 SM00388 His Kinase A (phosphoacceptor) domain J171_00845 SM00448 cheY-homologous receiver domain J171_00845 SM00862 Transcriptional regulatory protein, C terminal J171_00849 SM00829 Enoylreductase J171_00852 SM00345 helix_turn_helix gluconate operon transcriptional repressor J171_00856 SM00382 ATPases associated with a variety of cellular activities J171_00869 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J171_00875 SM00387 Histidine kinase-like ATPases J171_00875 SM00388 His Kinase A (phosphoacceptor) domain J171_00876 SM00448 cheY-homologous receiver domain J171_00876 SM00862 Transcriptional regulatory protein, C terminal J171_00900 SM00842 Cell division protein FtsA J171_00901 SM00864 Tubulin/FtsZ family, GTPase domain J171_00901 SM00865 Tubulin/FtsZ family, C-terminal domain J171_00905 SM00957 SecA DEAD-like domain J171_00905 SM00958 SecA preprotein cross-linking domain J171_00911 SM00829 Enoylreductase J171_00912 SM00944 Pro-kumamolisin, activation domain J171_00915 SM00642 Alpha-amylase domain J171_00922 SM00996 S-adenosyl-L-homocysteine hydrolase J171_00922 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain J171_00947 SM00382 ATPases associated with a variety of cellular activities J171_00951 SM00382 ATPases associated with a variety of cellular activities J171_00953 SM00448 cheY-homologous receiver domain J171_00953 SM00862 Transcriptional regulatory protein, C terminal J171_00954 SM00387 Histidine kinase-like ATPases J171_00954 SM00388 His Kinase A (phosphoacceptor) domain J171_00964 SM00382 ATPases associated with a variety of cellular activities J171_00966 SM00382 ATPases associated with a variety of cellular activities J171_00979 SM00382 ATPases associated with a variety of cellular activities J171_00982 SM00650 Ribosomal RNA adenine dimethylases J171_00987 SM00108 Bulb-type mannose-specific lectin J171_00996 SM00345 helix_turn_helix gluconate operon transcriptional repressor J171_00996 SM00895 J171_00996 J171_01003 SM00347 helix_turn_helix multiple antibiotic resistance protein J171_01015 SM00448 cheY-homologous receiver domain J171_01016 SM00387 Histidine kinase-like ATPases J171_01016 SM00388 His Kinase A (phosphoacceptor) domain J171_01016 SM00448 cheY-homologous receiver domain J171_01017 SM00421 helix_turn_helix, Lux Regulon J171_01030 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs J171_01030 SM00475 5'-3' exonuclease J171_01036 SM01002 Alanine dehydrogenase/PNT, C-terminal domain J171_01036 SM01003 Alanine dehydrogenase/PNT, N-terminal domain J171_01060 SM00852 Probable molybdopterin binding domain J171_01061 SM00028 Tetratricopeptide repeats J171_01062 SM00937 J171_01062 J171_01064 SM00028 Tetratricopeptide repeats J171_01068 SM01400 J171_01068 J171_01078 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. J171_01078 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. J171_01079 SM00649 Ribosomal protein L11/L12 J171_01085 SM00663 RNA polymerase I subunit A N-terminus J171_01088 SM00838 Elongation factor G C-terminus J171_01088 SM00889 Elongation factor G, domain IV J171_01090 SM01403 J171_01090 J171_01094 SM01382 J171_01094 J171_01094 SM01383 J171_01094 J171_01097 SM00322 K homology RNA-binding domain J171_01101 SM01374 J171_01101 J171_01102 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. J171_01114 SM00363 S4 RNA-binding domain J171_01114 SM01390 J171_01114 J171_01115 SM00662 RNA polymerases D J171_01123 SM00838 Elongation factor G C-terminus J171_01129 SM00829 Enoylreductase J171_01138 SM00382 ATPases associated with a variety of cellular activities J171_01140 SM00829 Enoylreductase J171_01145 SM00855 Phosphoglycerate mutase family J171_01156 SM00014 Acid phosphatase homologues J171_01160 SM00091 PAS domain J171_01160 SM00387 Histidine kinase-like ATPases J171_01160 SM00388 His Kinase A (phosphoacceptor) domain J171_01161 SM00448 cheY-homologous receiver domain J171_01161 SM00862 Transcriptional regulatory protein, C terminal J171_01165 SM01329 J171_01165 J171_01199 SM00387 Histidine kinase-like ATPases J171_01200 SM00091 PAS domain J171_01204 SM00382 ATPases associated with a variety of cellular activities J171_01204 SM00994 ClpX C4-type zinc finger J171_01204 SM01086 C-terminal, D2-small domain, of ClpB protein J171_01205 SM00382 ATPases associated with a variety of cellular activities J171_01205 SM00464 Found in ATP-dependent protease La (LON) J171_01206 SM00411 bacterial (prokaryotic) histone like domain J171_01212 SM00257 Lysin motif J171_01213 SM00849 Metallo-beta-lactamase superfamily J171_01216 SM00479 J171_01216 J171_01217 SM00331 Sigma factor PP2C-like phosphatases J171_01217 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain J171_01222 SM00849 Metallo-beta-lactamase superfamily J171_01223 SM00729 Elongator protein 3, MiaB family, Radical SAM J171_01236 SM00382 ATPases associated with a variety of cellular activities J171_01238 SM00493 J171_01238 J171_01241 SM00460 Transglutaminase/protease-like homologues J171_01243 SM00382 ATPases associated with a variety of cellular activities J171_01252 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. J171_01253 SM00822 J171_01253 J171_01255 SM00825 Beta-ketoacyl synthase J171_01262 SM00382 ATPases associated with a variety of cellular activities J171_01271 SM01359 J171_01271 J171_01271 SM01360 J171_01271 J171_01278 SM00271 DnaJ molecular chaperone homology domain J171_01280 SM00448 cheY-homologous receiver domain J171_01282 SM00244 prohibitin homologues J171_01283 SM00244 prohibitin homologues J171_01284 SM01321 J171_01284 J171_01285 SM00788 Adenylosuccinate synthetase J171_01288 SM00822 J171_01288 J171_01298 SM00220 Serine/Threonine protein kinases, catalytic domain J171_01302 SM00855 Phosphoglycerate mutase family J171_01313 SM00052 Putative diguanylate phosphodiesterase J171_01314 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J171_01316 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J171_01317 SM01092 CO dehydrogenase flavoprotein C-terminal domain J171_01320 SM00974 J171_01320 J171_01324 SM00966 SpoVT / AbrB like domain J171_01328 SM00481 DNA polymerase alpha chain like domain J171_01330 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J171_01337 SM00091 PAS domain J171_01337 SM00342 helix_turn_helix, arabinose operon control protein J171_01342 SM01060 J171_01342 J171_01354 SM00448 cheY-homologous receiver domain J171_01354 SM00862 Transcriptional regulatory protein, C terminal J171_01355 SM00387 Histidine kinase-like ATPases J171_01355 SM00388 His Kinase A (phosphoacceptor) domain J171_01362 SM00421 helix_turn_helix, Lux Regulon J171_01362 SM00448 cheY-homologous receiver domain J171_01365 SM00478 endonuclease III J171_01369 SM00244 prohibitin homologues J171_01387 SM00904 Riboflavin kinase J171_01396 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J171_01397 SM00382 ATPases associated with a variety of cellular activities J171_01399 SM00862 Transcriptional regulatory protein, C terminal J171_01400 SM00342 helix_turn_helix, arabinose operon control protein J171_01407 SM00387 Histidine kinase-like ATPases J171_01407 SM00388 His Kinase A (phosphoacceptor) domain J171_01408 SM00387 Histidine kinase-like ATPases J171_01408 SM00388 His Kinase A (phosphoacceptor) domain J171_01408 SM00448 cheY-homologous receiver domain J171_01413 SM00387 Histidine kinase-like ATPases J171_01413 SM00388 His Kinase A (phosphoacceptor) domain J171_01413 SM00448 cheY-homologous receiver domain J171_01415 SM00138 Methyltransferase, chemotaxis proteins J171_01416 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J171_01416 SM00387 Histidine kinase-like ATPases J171_01416 SM00388 His Kinase A (phosphoacceptor) domain J171_01416 SM00448 cheY-homologous receiver domain J171_01417 SM00091 PAS domain J171_01417 SM00387 Histidine kinase-like ATPases J171_01417 SM00388 His Kinase A (phosphoacceptor) domain J171_01418 SM00448 cheY-homologous receiver domain J171_01420 SM00813 Alpha-L-arabinofuranosidase C-terminus J171_01423 SM00382 ATPases associated with a variety of cellular activities J171_01423 SM00962 SRP54-type protein, GTPase domain J171_01423 SM00963 SRP54-type protein, helical bundle domain J171_01437 SM00533 DNA-binding domain of DNA mismatch repair MUTS family J171_01437 SM00534 ATPase domain of DNA mismatch repair MUTS family J171_01442 SM00812 Alpha-L-fucosidase J171_01447 SM00530 Helix-turn-helix XRE-family like proteins J171_01457 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J171_01458 SM00838 Elongation factor G C-terminus J171_01461 SM00358 Double-stranded RNA binding motif J171_01461 SM00535 Ribonuclease III family J171_01464 SM00448 cheY-homologous receiver domain J171_01466 SM01118 J171_01466 J171_01473 SM00357 Cold shock protein domain J171_01476 SM00487 DEAD-like helicases superfamily J171_01476 SM00490 helicase superfamily c-terminal domain J171_01482 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J171_01482 SM00267 diguanylate cyclase J171_01486 SM00869 Autotransporter beta-domain J171_01487 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J171_01488 SM00671 Sel1-like repeats. J171_01488 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. J171_01527 SM00382 ATPases associated with a variety of cellular activities J171_01544 SM00481 DNA polymerase alpha chain like domain J171_01552 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J171_01558 SM00267 diguanylate cyclase J171_01563 SM00972 Spore Coat Protein U domain J171_01566 SM00972 Spore Coat Protein U domain J171_01568 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J171_01572 SM01172 J171_01572 J171_01573 SM00710 Parallel beta-helix repeats J171_01573 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses J171_01580 SM00434 DNA Topoisomerase IV J171_01581 SM00342 helix_turn_helix, arabinose operon control protein J171_01582 SM00347 helix_turn_helix multiple antibiotic resistance protein J171_01587 SM01217 J171_01587 J171_01588 SM00631 J171_01588 J171_01594 SM00347 helix_turn_helix multiple antibiotic resistance protein J171_01598 SM00382 ATPases associated with a variety of cellular activities J171_01601 SM00947 Carbonic anhydrase J171_01604 SM00357 Cold shock protein domain J171_01627 SM00267 diguanylate cyclase J171_01629 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J171_01629 SM00267 diguanylate cyclase J171_01665 SM00271 DnaJ molecular chaperone homology domain J171_01675 SM00382 ATPases associated with a variety of cellular activities J171_01680 SM00861 Transketolase, pyrimidine binding domain J171_01682 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. J171_01686 SM00116 Domain in cystathionine beta-synthase and other proteins. J171_01686 SM01091 Transporter associated domain J171_01692 SM00382 ATPases associated with a variety of cellular activities J171_01693 SM00345 helix_turn_helix gluconate operon transcriptional repressor J171_01697 SM00984 UDP binding domain J171_01701 SM00354 helix_turn _helix lactose operon repressor J171_01705 SM01018 B12 binding domain J171_01707 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor J171_01711 SM00316 Ribosomal protein S1-like RNA-binding domain J171_01711 SM00357 Cold shock protein domain J171_01711 SM00955 J171_01711 J171_01713 SM00967 RNA 2'-O ribose methyltransferase substrate binding J171_01714 SM00267 diguanylate cyclase J171_01715 SM00479 J171_01715 J171_01718 SM00382 ATPases associated with a variety of cellular activities J171_01725 SM00947 Carbonic anhydrase J171_01727 SM00478 endonuclease III J171_01732 SM00450 Rhodanese Homology Domain J171_01734 SM00644 J171_01734 J171_01738 SM00382 ATPases associated with a variety of cellular activities J171_01739 SM00981 J171_01739 J171_01744 SM00479 J171_01744 J171_01749 SM00947 Carbonic anhydrase J171_01758 SM00421 helix_turn_helix, Lux Regulon J171_01758 SM00448 cheY-homologous receiver domain J171_01770 SM00968 SMC proteins Flexible Hinge Domain J171_01771 SM00771 ZipA, C-terminal domain (FtsZ-binding) J171_01774 SM00292 breast cancer carboxy-terminal domain J171_01774 SM00532 Ligase N family J171_01778 SM00434 DNA Topoisomerase IV J171_01779 SM00564 beta-propeller repeat J171_01786 SM00345 helix_turn_helix gluconate operon transcriptional repressor J171_01786 SM00866 J171_01786 J171_01791 SM00240 Forkhead associated domain J171_01795 SM00830 Chorismate mutase type II J171_01812 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_01812 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_01814 SM00347 helix_turn_helix multiple antibiotic resistance protein J171_01815 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J171_01815 SM00091 PAS domain J171_01815 SM00387 Histidine kinase-like ATPases J171_01815 SM00388 His Kinase A (phosphoacceptor) domain J171_01815 SM00448 cheY-homologous receiver domain J171_01816 SM00448 cheY-homologous receiver domain J171_01817 SM00382 ATPases associated with a variety of cellular activities J171_01818 SM00091 PAS domain J171_01818 SM00387 Histidine kinase-like ATPases J171_01818 SM00388 His Kinase A (phosphoacceptor) domain J171_01818 SM00448 cheY-homologous receiver domain J171_01849 SM00729 Elongator protein 3, MiaB family, Radical SAM J171_01851 SM00382 ATPases associated with a variety of cellular activities J171_01856 SM00116 Domain in cystathionine beta-synthase and other proteins. J171_01856 SM01091 Transporter associated domain J171_01861 SM00387 Histidine kinase-like ATPases J171_01861 SM00433 TopoisomeraseII J171_01866 SM01192 J171_01866 J171_01866 SM01193 J171_01866 J171_01871 SM00463 Small MutS-related domain J171_01875 SM00257 Lysin motif J171_01878 SM01103 J171_01878 J171_01880 SM00382 ATPases associated with a variety of cellular activities J171_01888 SM00382 ATPases associated with a variety of cellular activities J171_01890 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain J171_01893 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J171_01893 SM00091 PAS domain J171_01893 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_01903 SM00670 Large family of predicted nucleotide-binding domains J171_01907 SM01130 J171_01907 J171_01912 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J171_01921 SM00758 J171_01921 J171_01928 SM00646 J171_01928 J171_01944 SM00052 Putative diguanylate phosphodiesterase J171_01944 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J171_01944 SM00267 diguanylate cyclase J171_01946 SM00448 cheY-homologous receiver domain J171_01947 SM00387 Histidine kinase-like ATPases J171_01949 SM00014 Acid phosphatase homologues J171_01964 SM00912 haemagglutination activity domain J171_01974 SM00100 Cyclic nucleotide-monophosphate binding domain J171_01974 SM00419 helix_turn_helix, cAMP Regulatory protein J171_01989 SM01007 Class II Aldolase and Adducin N-terminal domain J171_01998 SM00841 Elongation factor P, C-terminal J171_01998 SM01185 J171_01998 J171_01999 SM00822 J171_01999 J171_02003 SM00899 J171_02003 J171_02010 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain J171_02012 SM00851 MGS-like domain J171_02012 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J171_02023 SM00850 LytTr DNA-binding domain J171_02024 SM00937 J171_02024 J171_02026 SM00448 cheY-homologous receiver domain J171_02026 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J171_02027 SM00073 Histidine Phosphotransfer domain J171_02027 SM00387 Histidine kinase-like ATPases J171_02027 SM00388 His Kinase A (phosphoacceptor) domain J171_02027 SM00448 cheY-homologous receiver domain J171_02032 SM00966 SpoVT / AbrB like domain J171_02036 SM00052 Putative diguanylate phosphodiesterase J171_02036 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J171_02036 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J171_02036 SM00091 PAS domain J171_02036 SM00267 diguanylate cyclase J171_02037 SM00448 cheY-homologous receiver domain J171_02039 SM00138 Methyltransferase, chemotaxis proteins J171_02040 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_02040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_02041 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_02041 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_02042 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_02042 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_02043 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_02043 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_02044 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_02044 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_02045 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_02045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_02046 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_02048 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_02048 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_02049 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_02049 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_02049 SM01049 J171_02049 J171_02051 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_02051 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_02052 SM00073 Histidine Phosphotransfer domain J171_02052 SM00260 Two component signalling adaptor domain J171_02052 SM00387 Histidine kinase-like ATPases J171_02052 SM01231 J171_02052 J171_02053 SM00448 cheY-homologous receiver domain J171_02055 SM00260 Two component signalling adaptor domain J171_02061 SM00220 Serine/Threonine protein kinases, catalytic domain J171_02075 SM00530 Helix-turn-helix XRE-family like proteins J171_02080 SM00073 Histidine Phosphotransfer domain J171_02080 SM00260 Two component signalling adaptor domain J171_02080 SM00387 Histidine kinase-like ATPases J171_02080 SM01231 J171_02080 J171_02082 SM00448 cheY-homologous receiver domain J171_02085 SM00382 ATPases associated with a variety of cellular activities J171_02085 SM00962 SRP54-type protein, GTPase domain J171_02088 SM00052 Putative diguanylate phosphodiesterase J171_02088 SM00267 diguanylate cyclase J171_02089 SM00267 diguanylate cyclase J171_02090 SM00267 diguanylate cyclase J171_02101 SM00382 ATPases associated with a variety of cellular activities J171_02112 SM00822 J171_02112 J171_02117 SM00382 ATPases associated with a variety of cellular activities J171_02118 SM00448 cheY-homologous receiver domain J171_02120 SM00421 helix_turn_helix, Lux Regulon J171_02120 SM00448 cheY-homologous receiver domain J171_02128 SM00047 Lysozyme subfamily 2 J171_02137 SM00260 Two component signalling adaptor domain J171_02137 SM00448 cheY-homologous receiver domain J171_02138 SM00858 J171_02138 J171_02141 SM00387 Histidine kinase-like ATPases J171_02142 SM00052 Putative diguanylate phosphodiesterase J171_02142 SM00267 diguanylate cyclase J171_02142 SM00448 cheY-homologous receiver domain J171_02143 SM00091 PAS domain J171_02143 SM00387 Histidine kinase-like ATPases J171_02144 SM00052 Putative diguanylate phosphodiesterase J171_02144 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J171_02144 SM00091 PAS domain J171_02144 SM00267 diguanylate cyclase J171_02146 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_02151 SM00382 ATPases associated with a variety of cellular activities J171_02151 SM01086 C-terminal, D2-small domain, of ClpB protein J171_02152 SM00316 Ribosomal protein S1-like RNA-binding domain J171_02156 SM00382 ATPases associated with a variety of cellular activities J171_02156 SM00843 J171_02156 J171_02160 SM00382 ATPases associated with a variety of cellular activities J171_02167 SM00562 J171_02167 J171_02169 SM00028 Tetratricopeptide repeats J171_02172 SM00564 beta-propeller repeat J171_02173 SM00382 ATPases associated with a variety of cellular activities J171_02174 SM00852 Probable molybdopterin binding domain J171_02175 SM00450 Rhodanese Homology Domain J171_02184 SM00852 Probable molybdopterin binding domain J171_02189 SM00529 Helix-turn-helix diphteria tox regulatory element J171_02191 SM00479 J171_02191 J171_02205 SM00316 Ribosomal protein S1-like RNA-binding domain J171_02205 SM00732 Likely ribonuclease with RNase H fold. J171_02206 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J171_02206 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J171_02206 SM00091 PAS domain J171_02206 SM00387 Histidine kinase-like ATPases J171_02206 SM00388 His Kinase A (phosphoacceptor) domain J171_02206 SM00448 cheY-homologous receiver domain J171_02207 SM00448 cheY-homologous receiver domain J171_02224 SM00382 ATPases associated with a variety of cellular activities J171_02235 SM00382 ATPases associated with a variety of cellular activities J171_02237 SM00849 Metallo-beta-lactamase superfamily J171_02240 SM00382 ATPases associated with a variety of cellular activities J171_02243 SM00226 Low molecular weight phosphatase family J171_02245 SM00278 Helix-hairpin-helix DNA-binding motif class 1 J171_02245 SM00465 GIY-YIG type nucleases (URI domain) J171_02251 SM00823 Phosphopantetheine attachment site J171_02258 SM00984 UDP binding domain J171_02262 SM00450 Rhodanese Homology Domain J171_02263 SM00421 helix_turn_helix, Lux Regulon J171_02263 SM00448 cheY-homologous receiver domain J171_02264 SM00316 Ribosomal protein S1-like RNA-binding domain J171_02265 SM00363 S4 RNA-binding domain J171_02273 SM01034 Sensors of blue-light using FAD J171_02294 SM00448 cheY-homologous receiver domain J171_02294 SM00850 LytTr DNA-binding domain J171_02297 SM00869 Autotransporter beta-domain J171_02301 SM00387 Histidine kinase-like ATPases J171_02301 SM00388 His Kinase A (phosphoacceptor) domain J171_02302 SM00421 helix_turn_helix, Lux Regulon J171_02302 SM00448 cheY-homologous receiver domain J171_02303 SM00869 Autotransporter beta-domain J171_02304 SM00052 Putative diguanylate phosphodiesterase J171_02309 SM01012 J171_02309 J171_02318 SM00342 helix_turn_helix, arabinose operon control protein J171_02319 SM00387 Histidine kinase-like ATPases J171_02320 SM00421 helix_turn_helix, Lux Regulon J171_02320 SM00448 cheY-homologous receiver domain J171_02321 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_02328 SM00530 Helix-turn-helix XRE-family like proteins J171_02342 SM00966 SpoVT / AbrB like domain J171_02347 SM00965 Secretin and TonB N terminus short domain J171_02352 SM00736 Dystroglycan-type cadherin-like domains. J171_02357 SM00382 ATPases associated with a variety of cellular activities J171_02367 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain J171_02367 SM00437 Bacterial DNA topoisomerase I DNA-binding domain J171_02367 SM00493 J171_02367 J171_02392 SM00342 helix_turn_helix, arabinose operon control protein J171_02401 SM00487 DEAD-like helicases superfamily J171_02452 SM00116 Domain in cystathionine beta-synthase and other proteins. J171_02452 SM01240 J171_02452 J171_02457 SM00822 J171_02457 J171_02459 SM00028 Tetratricopeptide repeats J171_02461 SM00411 bacterial (prokaryotic) histone like domain J171_02462 SM00316 Ribosomal protein S1-like RNA-binding domain J171_02478 SM00354 helix_turn _helix lactose operon repressor J171_02483 SM00363 S4 RNA-binding domain J171_02488 SM00382 ATPases associated with a variety of cellular activities J171_02498 SM00357 Cold shock protein domain J171_02499 SM00382 ATPases associated with a variety of cellular activities J171_02500 SM00382 ATPases associated with a variety of cellular activities J171_02506 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J171_02508 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase J171_02511 SM00859 Semialdehyde dehydrogenase, NAD binding domain J171_02519 SM00840 J171_02519 J171_02523 SM01234 J171_02523 J171_02531 SM00849 Metallo-beta-lactamase superfamily J171_02536 SM00656 J171_02536 J171_02544 SM00841 Elongation factor P, C-terminal J171_02544 SM01185 J171_02544 J171_02546 SM00052 Putative diguanylate phosphodiesterase J171_02546 SM00267 diguanylate cyclase J171_02546 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_02553 SM00382 ATPases associated with a variety of cellular activities J171_02554 SM00487 DEAD-like helicases superfamily J171_02554 SM00490 helicase superfamily c-terminal domain J171_02559 SM00357 Cold shock protein domain J171_02560 SM01322 J171_02560 J171_02562 SM00052 Putative diguanylate phosphodiesterase J171_02562 SM00267 diguanylate cyclase J171_02565 SM00822 J171_02565 J171_02569 SM00853 MutL C terminal dimerisation domain J171_02569 SM01340 J171_02569 J171_02570 SM00646 J171_02570 J171_02577 SM00474 3'-5' exonuclease J171_02581 SM00528 Domain in histone-like proteins of HNS family J171_02599 SM00857 Resolvase, N terminal domain J171_02614 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J171_02614 SM00267 diguanylate cyclase J171_02615 SM00260 Two component signalling adaptor domain J171_02616 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_02616 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_02618 SM00487 DEAD-like helicases superfamily J171_02618 SM00490 helicase superfamily c-terminal domain J171_02629 SM00729 Elongator protein 3, MiaB family, Radical SAM J171_02634 SM00116 Domain in cystathionine beta-synthase and other proteins. J171_02634 SM01091 Transporter associated domain J171_02640 SM00382 ATPases associated with a variety of cellular activities J171_02646 SM01230 J171_02646 J171_02648 SM01230 J171_02648 J171_02650 SM00267 diguanylate cyclase J171_02650 SM00448 cheY-homologous receiver domain J171_02660 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J171_02660 SM00091 PAS domain J171_02660 SM00387 Histidine kinase-like ATPases J171_02660 SM00388 His Kinase A (phosphoacceptor) domain J171_02660 SM00448 cheY-homologous receiver domain J171_02660 SM01079 J171_02660 J171_02661 SM00448 cheY-homologous receiver domain J171_02661 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J171_02667 SM00354 helix_turn _helix lactose operon repressor J171_02680 SM01323 J171_02680 J171_02683 SM00344 helix_turn_helix ASNC type J171_02698 SM00387 Histidine kinase-like ATPases J171_02708 SM00944 Pro-kumamolisin, activation domain J171_02719 SM01130 J171_02719 J171_02724 SM00342 helix_turn_helix, arabinose operon control protein J171_02725 SM00382 ATPases associated with a variety of cellular activities J171_02725 SM00962 SRP54-type protein, GTPase domain J171_02725 SM00963 SRP54-type protein, helical bundle domain J171_02726 SM00478 endonuclease III J171_02728 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J171_02728 SM00091 PAS domain J171_02728 SM00387 Histidine kinase-like ATPases J171_02728 SM00388 His Kinase A (phosphoacceptor) domain J171_02728 SM00448 cheY-homologous receiver domain J171_02731 SM00465 GIY-YIG type nucleases (URI domain) J171_02737 SM00507 HNH nucleases J171_02738 SM00861 Transketolase, pyrimidine binding domain J171_02743 SM00849 Metallo-beta-lactamase superfamily J171_02760 SM00422 helix_turn_helix, mercury resistance J171_02761 SM00411 bacterial (prokaryotic) histone like domain J171_02762 SM00873 B3/4 domain J171_02762 SM00874 tRNA synthetase B5 domain J171_02762 SM00896 Ferredoxin-fold anticodon binding domain J171_02768 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain J171_02769 SM00354 helix_turn _helix lactose operon repressor J171_02770 SM00642 Alpha-amylase domain J171_02777 SM00642 Alpha-amylase domain J171_02788 SM00382 ATPases associated with a variety of cellular activities J171_02800 SM00487 DEAD-like helicases superfamily J171_02800 SM00490 helicase superfamily c-terminal domain J171_02852 SM01001 AIR carboxylase J171_02856 SM00316 Ribosomal protein S1-like RNA-binding domain J171_02856 SM00322 K homology RNA-binding domain J171_02857 SM01387 J171_02857 J171_02861 SM00316 Ribosomal protein S1-like RNA-binding domain J171_02861 SM00322 K homology RNA-binding domain J171_02871 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J171_02872 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J171_02881 SM00822 J171_02881 J171_02884 SM00052 Putative diguanylate phosphodiesterase J171_02884 SM00267 diguanylate cyclase J171_02884 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_02898 SM00859 Semialdehyde dehydrogenase, NAD binding domain J171_02904 SM00257 Lysin motif J171_02910 SM00729 Elongator protein 3, MiaB family, Radical SAM J171_02923 SM01160 J171_02923 J171_02934 SM00098 Alkaline phosphatase homologues J171_02935 SM00977 TilS substrate C-terminal domain J171_02938 SM01351 J171_02938 J171_02945 SM00316 Ribosomal protein S1-like RNA-binding domain J171_02971 SM00382 ATPases associated with a variety of cellular activities J171_02978 SM00448 cheY-homologous receiver domain J171_02978 SM00862 Transcriptional regulatory protein, C terminal J171_02979 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_02979 SM00387 Histidine kinase-like ATPases J171_02979 SM00388 His Kinase A (phosphoacceptor) domain J171_02985 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J171_02985 SM00267 diguanylate cyclase J171_02986 SM00363 S4 RNA-binding domain J171_02987 SM00052 Putative diguanylate phosphodiesterase J171_02987 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J171_02987 SM00091 PAS domain J171_02987 SM00267 diguanylate cyclase J171_02988 SM00487 DEAD-like helicases superfamily J171_02988 SM00490 helicase superfamily c-terminal domain J171_02997 SM00342 helix_turn_helix, arabinose operon control protein J171_02997 SM00478 endonuclease III J171_02997 SM01009 AlkA N-terminal domain J171_03001 SM00829 Enoylreductase J171_03015 SM00342 helix_turn_helix, arabinose operon control protein J171_03029 SM00645 Papain family cysteine protease J171_03030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_03030 SM00387 Histidine kinase-like ATPases J171_03030 SM00388 His Kinase A (phosphoacceptor) domain J171_03031 SM00448 cheY-homologous receiver domain J171_03031 SM00862 Transcriptional regulatory protein, C terminal J171_03034 SM00487 DEAD-like helicases superfamily J171_03034 SM00490 helicase superfamily c-terminal domain J171_03034 SM00982 J171_03034 J171_03034 SM01058 CarD-like/TRCF domain J171_03041 SM00073 Histidine Phosphotransfer domain J171_03041 SM00260 Two component signalling adaptor domain J171_03041 SM00387 Histidine kinase-like ATPases J171_03041 SM01231 J171_03041 J171_03042 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_03042 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_03043 SM00260 Two component signalling adaptor domain J171_03044 SM00052 Putative diguanylate phosphodiesterase J171_03044 SM00448 cheY-homologous receiver domain J171_03045 SM00138 Methyltransferase, chemotaxis proteins J171_03046 SM00448 cheY-homologous receiver domain J171_03047 SM00155 Phospholipase D. Active site motifs. J171_03050 SM00855 Phosphoglycerate mutase family J171_03060 SM00248 ankyrin repeats J171_03070 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J171_03071 SM01092 CO dehydrogenase flavoprotein C-terminal domain J171_03073 SM00829 Enoylreductase J171_03074 SM00267 diguanylate cyclase J171_03075 SM00487 DEAD-like helicases superfamily J171_03095 SM00732 Likely ribonuclease with RNase H fold. J171_03102 SM00382 ATPases associated with a variety of cellular activities J171_03105 SM00411 bacterial (prokaryotic) histone like domain J171_03111 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain J171_03114 SM00382 ATPases associated with a variety of cellular activities J171_03120 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. J171_03121 SM00671 Sel1-like repeats. J171_03127 SM00054 EF-hand, calcium binding motif J171_03145 SM00116 Domain in cystathionine beta-synthase and other proteins. J171_03149 SM00382 ATPases associated with a variety of cellular activities J171_03158 SM00924 MgtE intracellular N domain J171_03164 SM00656 J171_03164 J171_03166 SM00421 helix_turn_helix, Lux Regulon J171_03172 SM00849 Metallo-beta-lactamase superfamily J171_03174 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. J171_03178 SM00422 helix_turn_helix, mercury resistance J171_03205 SM00342 helix_turn_helix, arabinose operon control protein J171_03207 SM00387 Histidine kinase-like ATPases J171_03207 SM00388 His Kinase A (phosphoacceptor) domain J171_03207 SM00448 cheY-homologous receiver domain J171_03208 SM00387 Histidine kinase-like ATPases J171_03208 SM00388 His Kinase A (phosphoacceptor) domain J171_03208 SM00448 cheY-homologous receiver domain J171_03210 SM00387 Histidine kinase-like ATPases J171_03210 SM00388 His Kinase A (phosphoacceptor) domain J171_03210 SM00448 cheY-homologous receiver domain J171_03211 SM00867 YceI-like domain J171_03213 SM00867 YceI-like domain J171_03225 SM00116 Domain in cystathionine beta-synthase and other proteins. J171_03231 SM00028 Tetratricopeptide repeats J171_03251 SM00812 Alpha-L-fucosidase J171_03252 SM00636 J171_03252 J171_03255 SM00758 J171_03255 J171_03255 SM01217 J171_03255 J171_03261 SM01149 J171_03261 J171_03268 SM00369 Leucine-rich repeats, typical (most populated) subfamily J171_03272 SM00260 Two component signalling adaptor domain J171_03274 SM00073 Histidine Phosphotransfer domain J171_03274 SM00260 Two component signalling adaptor domain J171_03274 SM00387 Histidine kinase-like ATPases J171_03274 SM00448 cheY-homologous receiver domain J171_03274 SM01231 J171_03274 J171_03275 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_03276 SM00260 Two component signalling adaptor domain J171_03277 SM00448 cheY-homologous receiver domain J171_03278 SM00448 cheY-homologous receiver domain J171_03283 SM00491 J171_03283 J171_03288 SM00954 Region found in RelA / SpoT proteins J171_03297 SM00382 ATPases associated with a variety of cellular activities J171_03297 SM00487 DEAD-like helicases superfamily J171_03297 SM00490 helicase superfamily c-terminal domain J171_03297 SM00847 Helicase associated domain (HA2) Add an annotation J171_03299 SM00341 Helicase and RNase D C-terminal J171_03299 SM00487 DEAD-like helicases superfamily J171_03299 SM00490 helicase superfamily c-terminal domain J171_03299 SM00956 J171_03299 J171_03301 SM00448 cheY-homologous receiver domain J171_03306 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_03306 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_03309 SM00448 cheY-homologous receiver domain J171_03310 SM00091 PAS domain J171_03310 SM00911 HWE histidine kinase J171_03321 SM00382 ATPases associated with a variety of cellular activities J171_03324 SM00278 Helix-hairpin-helix DNA-binding motif class 1 J171_03331 SM00834 Putative regulatory protein J171_03340 SM00382 ATPases associated with a variety of cellular activities J171_03360 SM00855 Phosphoglycerate mutase family J171_03372 SM00382 ATPases associated with a variety of cellular activities J171_03372 SM01086 C-terminal, D2-small domain, of ClpB protein J171_03373 SM00382 ATPases associated with a variety of cellular activities J171_03375 SM00062 Bacterial periplasmic substrate-binding proteins J171_03390 SM00564 beta-propeller repeat J171_03391 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_03412 SM01126 J171_03412 J171_03414 SM00881 CoA binding domain J171_03416 SM00387 Histidine kinase-like ATPases J171_03416 SM00388 His Kinase A (phosphoacceptor) domain J171_03417 SM00382 ATPases associated with a variety of cellular activities J171_03417 SM00448 cheY-homologous receiver domain J171_03431 SM00387 Histidine kinase-like ATPases J171_03431 SM00388 His Kinase A (phosphoacceptor) domain J171_03432 SM00448 cheY-homologous receiver domain J171_03432 SM00862 Transcriptional regulatory protein, C terminal J171_03435 SM00642 Alpha-amylase domain J171_03436 SM00528 Domain in histone-like proteins of HNS family J171_03438 SM00318 Staphylococcal nuclease homologues J171_03453 SM00387 Histidine kinase-like ATPases J171_03453 SM00388 His Kinase A (phosphoacceptor) domain J171_03454 SM00448 cheY-homologous receiver domain J171_03456 SM00646 J171_03456 J171_03465 SM00530 Helix-turn-helix XRE-family like proteins J171_03469 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J171_03469 SM00387 Histidine kinase-like ATPases J171_03473 SM00255 Toll - interleukin 1 - resistance J171_03477 SM00869 Autotransporter beta-domain J171_03487 SM00354 helix_turn _helix lactose operon repressor J171_03493 SM00967 RNA 2'-O ribose methyltransferase substrate binding J171_03514 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J171_03514 SM00387 Histidine kinase-like ATPases J171_03520 SM00506 Appr-1"-p processing enzyme J171_03529 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J171_03534 SM00849 Metallo-beta-lactamase superfamily J171_03537 SM00382 ATPases associated with a variety of cellular activities J171_03549 SM00861 Transketolase, pyrimidine binding domain J171_03552 SM00028 Tetratricopeptide repeats J171_03552 SM00327 von Willebrand factor (vWF) type A domain J171_03553 SM00327 von Willebrand factor (vWF) type A domain J171_03556 SM00382 ATPases associated with a variety of cellular activities J171_03558 SM00965 Secretin and TonB N terminus short domain J171_03569 SM00487 DEAD-like helicases superfamily J171_03569 SM00490 helicase superfamily c-terminal domain J171_03571 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J171_03571 SM00954 Region found in RelA / SpoT proteins J171_03572 SM01409 J171_03572 J171_03573 SM00072 Guanylate kinase homologues. J171_03578 SM00729 Elongator protein 3, MiaB family, Radical SAM J171_03583 SM01011 Aminopeptidase P, N-terminal domain J171_03598 SM00028 Tetratricopeptide repeats J171_03598 SM00382 ATPases associated with a variety of cellular activities J171_03598 SM00421 helix_turn_helix, Lux Regulon J171_03612 SM00464 Found in ATP-dependent protease La (LON) J171_03622 SM00342 helix_turn_helix, arabinose operon control protein J171_03623 SM00862 Transcriptional regulatory protein, C terminal J171_03627 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_03633 SM00917 LeuA allosteric (dimerisation) domain J171_03634 SM01329 J171_03634 J171_03638 SM00267 diguanylate cyclase J171_03648 SM00919 Malic enzyme, NAD binding domain J171_03648 SM01274 J171_03648 J171_03651 SM00387 Histidine kinase-like ATPases J171_03651 SM00388 His Kinase A (phosphoacceptor) domain J171_03651 SM00448 cheY-homologous receiver domain J171_03659 SM00421 helix_turn_helix, Lux Regulon J171_03659 SM00448 cheY-homologous receiver domain J171_03661 SM00387 Histidine kinase-like ATPases J171_03661 SM00388 His Kinase A (phosphoacceptor) domain J171_03662 SM00448 cheY-homologous receiver domain J171_03662 SM00862 Transcriptional regulatory protein, C terminal J171_03666 SM00822 J171_03666 J171_03667 SM00354 helix_turn _helix lactose operon repressor J171_03670 SM00642 Alpha-amylase domain J171_03672 SM01154 J171_03672 J171_03679 SM00450 Rhodanese Homology Domain J171_03692 SM00028 Tetratricopeptide repeats J171_03709 SM00345 helix_turn_helix gluconate operon transcriptional repressor J171_03709 SM00866 J171_03709 J171_03721 SM00382 ATPases associated with a variety of cellular activities J171_03726 SM01211 J171_03726 J171_03739 SM00656 J171_03739 J171_03745 SM00528 Domain in histone-like proteins of HNS family J171_03748 SM00382 ATPases associated with a variety of cellular activities J171_03754 SM00882 Coenzyme A transferase J171_03755 SM00882 Coenzyme A transferase J171_03758 SM00984 UDP binding domain J171_03763 SM00893 Electron transfer flavoprotein domain J171_03764 SM00893 Electron transfer flavoprotein domain J171_03778 SM00382 ATPases associated with a variety of cellular activities J171_03781 SM00116 Domain in cystathionine beta-synthase and other proteins. J171_03788 SM00487 DEAD-like helicases superfamily J171_03788 SM00490 helicase superfamily c-terminal domain J171_03795 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J171_03802 SM00825 Beta-ketoacyl synthase J171_03817 SM00382 ATPases associated with a variety of cellular activities J171_03821 SM00382 ATPases associated with a variety of cellular activities J171_03821 SM00387 Histidine kinase-like ATPases J171_03821 SM00448 cheY-homologous receiver domain J171_03824 SM00830 Chorismate mutase type II J171_03826 SM00382 ATPases associated with a variety of cellular activities J171_03840 SM00986 Uracil DNA glycosylase superfamily J171_03840 SM00987 UreE urease accessory protein, C-terminal domain J171_03846 SM00382 ATPases associated with a variety of cellular activities J171_03846 SM00930 J171_03846 J171_03850 SM00387 Histidine kinase-like ATPases J171_03850 SM00388 His Kinase A (phosphoacceptor) domain J171_03850 SM00448 cheY-homologous receiver domain J171_03860 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J171_03860 SM00091 PAS domain J171_03860 SM00387 Histidine kinase-like ATPases J171_03860 SM00388 His Kinase A (phosphoacceptor) domain J171_03860 SM00448 cheY-homologous receiver domain J171_03864 SM01005 Alanine racemase, C-terminal domain J171_03866 SM00344 helix_turn_helix ASNC type J171_03877 SM00382 ATPases associated with a variety of cellular activities J171_03879 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. J171_03880 SM00986 Uracil DNA glycosylase superfamily J171_03880 SM00987 UreE urease accessory protein, C-terminal domain J171_03881 SM00729 Elongator protein 3, MiaB family, Radical SAM J171_03894 SM00448 cheY-homologous receiver domain J171_03894 SM00850 LytTr DNA-binding domain J171_03895 SM00387 Histidine kinase-like ATPases J171_03902 SM00091 PAS domain J171_03902 SM00138 Methyltransferase, chemotaxis proteins J171_03902 SM00911 HWE histidine kinase J171_03903 SM00448 cheY-homologous receiver domain J171_03905 SM00382 ATPases associated with a variety of cellular activities J171_03905 SM00448 cheY-homologous receiver domain J171_03916 SM00382 ATPases associated with a variety of cellular activities J171_03931 SM00382 ATPases associated with a variety of cellular activities J171_03932 SM00631 J171_03932 J171_03940 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J171_03940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_03941 SM00477 DNA/RNA non-specific endonuclease J171_03941 SM00892 DNA/RNA non-specific endonuclease J171_03972 SM00257 Lysin motif J171_03977 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain J171_03977 SM00437 Bacterial DNA topoisomerase I DNA-binding domain J171_03977 SM00493 J171_03977 J171_03988 SM00487 DEAD-like helicases superfamily J171_03988 SM00490 helicase superfamily c-terminal domain J171_03995 SM00986 Uracil DNA glycosylase superfamily J171_03995 SM00987 UreE urease accessory protein, C-terminal domain J171_03996 SM00448 cheY-homologous receiver domain J171_03998 SM00382 ATPases associated with a variety of cellular activities J171_03999 SM00487 DEAD-like helicases superfamily J171_03999 SM00490 helicase superfamily c-terminal domain J171_04001 SM00357 Cold shock protein domain J171_04001 SM00382 ATPases associated with a variety of cellular activities J171_04001 SM00959 Rho termination factor, N-terminal domain J171_04007 SM00487 DEAD-like helicases superfamily J171_04016 SM00257 Lysin motif J171_04022 SM01150 J171_04022 J171_04031 SM00644 J171_04031 J171_04033 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J171_04040 SM01217 J171_04040 J171_04041 SM00905 Dihydroneopterin aldolase J171_04046 SM00400 zinc finger J171_04046 SM00493 J171_04046 J171_04046 SM00766 DNA primase DnaG DnaB-binding J171_04068 SM00363 S4 RNA-binding domain J171_04077 SM00470 ParB-like nuclease domain J171_04081 SM01259 J171_04081 J171_04087 SM00836 DALR anticodon binding domain J171_04087 SM01016 Arginyl tRNA synthetase N terminal dom J171_04093 SM00823 Phosphopantetheine attachment site J171_04093 SM00824 Thioesterase J171_04100 SM00938 Nitrogen regulatory protein P-II J171_04102 SM00382 ATPases associated with a variety of cellular activities J171_04128 SM00052 Putative diguanylate phosphodiesterase J171_04136 SM00244 prohibitin homologues J171_04146 SM00448 cheY-homologous receiver domain J171_04146 SM00862 Transcriptional regulatory protein, C terminal J171_04147 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J171_04147 SM00387 Histidine kinase-like ATPases J171_04147 SM00388 His Kinase A (phosphoacceptor) domain J171_04151 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J171_04160 SM01060 J171_04160 J171_04163 SM00421 helix_turn_helix, Lux Regulon J171_04163 SM00448 cheY-homologous receiver domain J171_04166 SM00382 ATPases associated with a variety of cellular activities J171_04175 SM00849 Metallo-beta-lactamase superfamily J171_04181 SM00960 Roadblock/LC7 domain J171_04194 SM00387 Histidine kinase-like ATPases J171_04194 SM00388 His Kinase A (phosphoacceptor) domain J171_04195 SM00448 cheY-homologous receiver domain J171_04195 SM00862 Transcriptional regulatory protein, C terminal J171_04199 SM00248 ankyrin repeats J171_04200 SM01060 J171_04200 J171_04201 SM00491 J171_04201 J171_04207 SM00477 DNA/RNA non-specific endonuclease J171_04207 SM00892 DNA/RNA non-specific endonuclease J171_04210 SM01004 Delta-aminolevulinic acid dehydratase J171_04218 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. J171_04222 SM00382 ATPases associated with a variety of cellular activities J171_04224 SM00530 Helix-turn-helix XRE-family like proteins J171_04232 SM00342 helix_turn_helix, arabinose operon control protein J171_04234 SM00382 ATPases associated with a variety of cellular activities J171_04247 SM00881 CoA binding domain J171_04248 SM00116 Domain in cystathionine beta-synthase and other proteins. J171_04248 SM00924 MgtE intracellular N domain J171_04249 SM01057 Eukaryotic-type carbonic anhydrase J171_04254 SM00248 ankyrin repeats J171_04256 SM00825 Beta-ketoacyl synthase J171_04261 SM00822 J171_04261 J171_04270 SM00563 Phosphate acyltransferases J171_04281 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs J171_04281 SM00474 3'-5' exonuclease J171_04281 SM00475 5'-3' exonuclease J171_04281 SM00482 DNA polymerase A domain J171_04284 SM00912 haemagglutination activity domain J171_04288 SM00331 Sigma factor PP2C-like phosphatases J171_04288 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain J171_04293 SM00240 Forkhead associated domain J171_04296 SM00028 Tetratricopeptide repeats J171_04298 SM00220 Serine/Threonine protein kinases, catalytic domain J171_04302 SM00965 Secretin and TonB N terminus short domain J171_04304 SM00915 Jacalin-like lectin domain J171_04310 SM00382 ATPases associated with a variety of cellular activities J171_04310 SM01086 C-terminal, D2-small domain, of ClpB protein J171_04318 SM00342 helix_turn_helix, arabinose operon control protein J171_04320 SM01266 J171_04320 J171_04323 SM00155 Phospholipase D. Active site motifs. J171_04352 SM00421 helix_turn_helix, Lux Regulon J171_04352 SM00448 cheY-homologous receiver domain J171_04362 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J171_04366 SM00346 helix_turn_helix isocitrate lyase regulation J171_04368 SM00091 PAS domain J171_04368 SM00387 Histidine kinase-like ATPases J171_04368 SM00388 His Kinase A (phosphoacceptor) domain J171_04368 SM00448 cheY-homologous receiver domain J171_04373 SM00564 beta-propeller repeat J171_04383 SM00382 ATPases associated with a variety of cellular activities J171_04385 SM00836 DALR anticodon binding domain J171_04387 SM00382 ATPases associated with a variety of cellular activities J171_04401 SM00354 helix_turn _helix lactose operon repressor J171_04404 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J171_04406 SM00758 J171_04406 J171_04406 SM01217 J171_04406 J171_04410 SM00612 J171_04410 J171_04417 SM01007 Class II Aldolase and Adducin N-terminal domain J171_04422 SM00633 Glycosyl hydrolase family 10 J171_04425 SM00633 Glycosyl hydrolase family 10 J171_04427 SM00633 Glycosyl hydrolase family 10 J171_04441 SM00829 Enoylreductase J171_04442 SM00563 Phosphate acyltransferases J171_04444 SM00354 helix_turn _helix lactose operon repressor J171_04448 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family J171_04456 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J171_04456 SM00388 His Kinase A (phosphoacceptor) domain J171_04459 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain J171_04459 SM01232 J171_04459 J171_04467 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J171_04467 SM00091 PAS domain J171_04478 SM00347 helix_turn_helix multiple antibiotic resistance protein J171_04485 SM00155 Phospholipase D. Active site motifs. J171_04501 SM00796 Allophanate hydrolase subunit 1 J171_04501 SM00797 Allophanate hydrolase subunit 2 J171_04501 SM00878 Biotin carboxylase C-terminal domain J171_04515 SM00382 ATPases associated with a variety of cellular activities J171_04525 SM00829 Enoylreductase J171_04533 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J171_04533 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J171_04533 SM00091 PAS domain J171_04533 SM00267 diguanylate cyclase J171_04539 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase J171_04545 SM00014 Acid phosphatase homologues J171_04547 SM00028 Tetratricopeptide repeats