locus-tag class description BJD09_00005 PF01584 CheW-like domain BJD09_00005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_00005 PF01627 Hpt domain BJD09_00005 PF00072 Response regulator receiver domain BJD09_00020 PF13302 Acetyltransferase (GNAT) domain BJD09_00040 PF01112 Asparaginase BJD09_00045 PF03932 CutC family BJD09_00080 PF01301 Glycosyl hydrolases family 35 BJD09_00085 PF07971 Glycosyl hydrolase family 92 BJD09_00085 PF17678 Glycosyl hydrolase family 92 N-terminal domain BJD09_00095 PF02056 Family 4 glycosyl hydrolase BJD09_00095 PF11975 Family 4 glycosyl hydrolase C-terminal domain BJD09_00105 PF13520 Amino acid permease BJD09_00110 PF01301 Glycosyl hydrolases family 35 BJD09_00120 PF07691 PA14 domain BJD09_00120 PF01915 Glycosyl hydrolase family 3 C-terminal domain BJD09_00120 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD09_00120 PF14310 Fibronectin type III-like domain BJD09_00135 PF01476 LysM domain BJD09_00135 PF00704 Glycosyl hydrolases family 18 BJD09_00150 PF02685 Glucokinase BJD09_00155 PF04452 RNA methyltransferase BJD09_00160 PF00202 Aminotransferase class-III BJD09_00165 PF00293 NUDIX domain BJD09_00170 PF00459 Inositol monophosphatase family BJD09_00175 PF03819 MazG nucleotide pyrophosphohydrolase domain BJD09_00180 PF02694 Uncharacterised BCR, YnfA/UPF0060 family BJD09_00185 PF16200 C-terminal region of band_7 BJD09_00185 PF01145 SPFH domain / Band 7 family BJD09_00195 PF01571 Aminomethyltransferase folate-binding domain BJD09_00195 PF08669 Glycine cleavage T-protein C-terminal barrel domain BJD09_00200 PF01597 Glycine cleavage H-protein BJD09_00225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD09_00225 PF09317 Domain of unknown function (DUF1974) BJD09_00225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD09_00230 PF00561 alpha/beta hydrolase fold BJD09_00235 PF00440 Bacterial regulatory proteins, tetR family BJD09_00245 PF07715 TonB-dependent Receptor Plug Domain BJD09_00245 PF00593 TonB dependent receptor BJD09_00255 PF01430 Hsp33 protein BJD09_00260 PF00912 Transglycosylase BJD09_00265 PF00535 Glycosyl transferase family 2 BJD09_00270 PF00478 IMP dehydrogenase / GMP reductase domain BJD09_00270 PF00571 CBS domain BJD09_00275 PF05170 AsmA family BJD09_00280 PF03006 Haemolysin-III related BJD09_00285 PF16658 Class II release factor RF3, C-terminal domain BJD09_00285 PF00009 Elongation factor Tu GTP binding domain BJD09_00290 PF01476 LysM domain BJD09_00290 PF08525 Opacity-associated protein A N-terminal motif BJD09_00290 PF01551 Peptidase family M23 BJD09_00295 PF00561 alpha/beta hydrolase fold BJD09_00300 PF01053 Cys/Met metabolism PLP-dependent enzyme BJD09_00305 PF03447 Homoserine dehydrogenase, NAD binding domain BJD09_00305 PF00696 Amino acid kinase family BJD09_00305 PF00742 Homoserine dehydrogenase BJD09_00315 PF12697 Alpha/beta hydrolase family BJD09_00320 PF03313 Serine dehydratase alpha chain BJD09_00320 PF03315 Serine dehydratase beta chain BJD09_00340 PF04264 YceI-like domain BJD09_00345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_00345 PF00072 Response regulator receiver domain BJD09_00345 PF00512 His Kinase A (phospho-acceptor) domain BJD09_00345 PF01627 Hpt domain BJD09_00350 PF01627 Hpt domain BJD09_00350 PF00512 His Kinase A (phospho-acceptor) domain BJD09_00350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_00350 PF00072 Response regulator receiver domain BJD09_00360 PF17149 Periplasmic sensor domain found in signal transduction proteins BJD09_00360 PF00672 HAMP domain BJD09_00360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_00360 PF00072 Response regulator receiver domain BJD09_00360 PF00512 His Kinase A (phospho-acceptor) domain BJD09_00360 PF01627 Hpt domain BJD09_00365 PF00072 Response regulator receiver domain BJD09_00365 PF17149 Periplasmic sensor domain found in signal transduction proteins BJD09_00365 PF00672 HAMP domain BJD09_00365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_00365 PF00512 His Kinase A (phospho-acceptor) domain BJD09_00365 PF01627 Hpt domain BJD09_00370 PF07690 Major Facilitator Superfamily BJD09_00375 PF02954 Bacterial regulatory protein, Fis family BJD09_00375 PF00158 Sigma-54 interaction domain BJD09_00375 PF01590 GAF domain BJD09_00445 PF01208 Uroporphyrinogen decarboxylase (URO-D) BJD09_00455 PF01761 3-dehydroquinate synthase BJD09_00460 PF01202 Shikimate kinase BJD09_00465 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BJD09_00465 PF01243 Pyridoxamine 5'-phosphate oxidase BJD09_00475 PF04012 PspA/IM30 family BJD09_00500 PF03738 Glutathionylspermidine synthase preATP-grasp BJD09_00510 PF07690 Major Facilitator Superfamily BJD09_00515 PF00376 MerR family regulatory protein BJD09_00515 PF09278 MerR, DNA binding BJD09_00550 PF04820 Tryptophan halogenase BJD09_00555 PF12706 Beta-lactamase superfamily domain BJD09_00590 PF00324 Amino acid permease BJD09_00595 PF00196 Bacterial regulatory proteins, luxR family BJD09_00605 PF00561 alpha/beta hydrolase fold BJD09_00615 PF00544 Pectate lyase BJD09_00625 PF00324 Amino acid permease BJD09_00635 PF01654 Cytochrome bd terminal oxidase subunit I BJD09_00640 PF02322 Cytochrome bd terminal oxidase subunit II BJD09_00650 PF00756 Putative esterase BJD09_00655 PF01769 Divalent cation transporter BJD09_00655 PF00571 CBS domain BJD09_00655 PF03448 MgtE intracellular N domain BJD09_00660 PF00391 PEP-utilising enzyme, mobile domain BJD09_00660 PF02896 PEP-utilising enzyme, TIM barrel domain BJD09_00660 PF05524 PEP-utilising enzyme, N-terminal BJD09_00665 PF00381 PTS HPr component phosphorylation site BJD09_00675 PF03668 P-loop ATPase protein family BJD09_00680 PF07475 HPr Serine kinase C-terminal domain BJD09_00680 PF02603 HPr Serine kinase N terminus BJD09_00685 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BJD09_00690 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BJD09_00695 PF04552 Sigma-54, DNA binding domain BJD09_00695 PF04963 Sigma-54 factor, core binding domain BJD09_00695 PF00309 Sigma-54 factor, Activator interacting domain (AID) BJD09_00700 PF00005 ABC transporter BJD09_00705 PF03968 OstA-like protein BJD09_00720 PF01380 SIS domain BJD09_00720 PF00571 CBS domain BJD09_00725 PF01722 BolA-like protein BJD09_00730 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BJD09_00750 PF00551 Formyl transferase BJD09_00760 PF02769 AIR synthase related protein, C-terminal domain BJD09_00760 PF00586 AIR synthase related protein, N-terminal domain BJD09_00770 PF01594 AI-2E family transporter BJD09_00775 PF00308 Bacterial dnaA protein BJD09_00780 PF00483 Nucleotidyl transferase BJD09_00785 PF01636 Phosphotransferase enzyme family BJD09_00795 PF07687 Peptidase dimerisation domain BJD09_00795 PF01546 Peptidase family M20/M25/M40 BJD09_00815 PF00175 Oxidoreductase NAD-binding domain BJD09_00815 PF00258 Flavodoxin BJD09_00815 PF00667 FAD binding domain BJD09_00820 PF02424 ApbE family BJD09_00845 PF18331 PKHD-type hydroxylase C-terminal domain BJD09_00845 PF13640 2OG-Fe(II) oxygenase superfamily BJD09_00850 PF07715 TonB-dependent Receptor Plug Domain BJD09_00850 PF00593 TonB dependent receptor BJD09_00855 PF00355 Rieske [2Fe-2S] domain BJD09_00865 PF00266 Aminotransferase class-V BJD09_00870 PF01458 Uncharacterized protein family (UPF0051) BJD09_00875 PF00005 ABC transporter BJD09_00880 PF01458 Uncharacterized protein family (UPF0051) BJD09_00885 PF02082 Transcriptional regulator BJD09_00895 PF01965 DJ-1/PfpI family BJD09_00915 PF01551 Peptidase family M23 BJD09_00925 PF14748 Pyrroline-5-carboxylate reductase dimerisation BJD09_00925 PF03807 NADP oxidoreductase coenzyme F420-dependent BJD09_00930 PF01168 Alanine racemase, N-terminal domain BJD09_00935 PF00437 Type II/IV secretion system protein BJD09_00940 PF00437 Type II/IV secretion system protein BJD09_00945 PF03211 Pectate lyase BJD09_00955 PF00117 Glutamine amidotransferase class-I BJD09_00955 PF03352 Methyladenine glycosylase BJD09_00955 PF00958 GMP synthase C terminal domain BJD09_00955 PF13302 Acetyltransferase (GNAT) domain BJD09_00955 PF13673 Acetyltransferase (GNAT) domain BJD09_00965 PF02622 Uncharacterized ACR, COG1678 BJD09_00970 PF03652 Holliday junction resolvase BJD09_00975 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BJD09_00975 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BJD09_00980 PF02566 OsmC-like protein BJD09_00990 PF02567 Phenazine biosynthesis-like protein BJD09_00995 PF02567 Phenazine biosynthesis-like protein BJD09_01000 PF01842 ACT domain BJD09_01000 PF00696 Amino acid kinase family BJD09_01015 PF08245 Mur ligase middle domain BJD09_01015 PF02875 Mur ligase family, glutamate ligase domain BJD09_01030 PF00348 Polyprenyl synthetase BJD09_01035 PF00436 Single-strand binding protein family BJD09_01040 PF00563 EAL domain BJD09_01040 PF01590 GAF domain BJD09_01040 PF00990 Diguanylate cyclase, GGDEF domain BJD09_01040 PF00360 Phytochrome region BJD09_01045 PF00698 Acyl transferase domain BJD09_01045 PF14765 Polyketide synthase dehydratase BJD09_01045 PF00550 Phosphopantetheine attachment site BJD09_01045 PF08659 KR domain BJD09_01045 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD09_01045 PF16197 Ketoacyl-synthetase C-terminal extension BJD09_01045 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD09_01045 PF08240 Alcohol dehydrogenase GroES-like domain BJD09_01045 PF08990 Erythronolide synthase docking BJD09_01045 PF09277 Erythronolide synthase, docking BJD09_01050 PF10518 TAT (twin-arginine translocation) pathway signal sequence BJD09_01050 PF01799 [2Fe-2S] binding domain BJD09_01050 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD09_01055 PF03450 CO dehydrogenase flavoprotein C-terminal domain BJD09_01055 PF00941 FAD binding domain in molybdopterin dehydrogenase BJD09_01060 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BJD09_01060 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BJD09_01105 PF04328 Selenoprotein, putative BJD09_01110 PF02554 Carbon starvation protein CstA BJD09_01110 PF13722 5TM C-terminal transporter carbon starvation CstA BJD09_01115 PF02678 Pirin BJD09_01115 PF05726 Pirin C-terminal cupin domain BJD09_01130 PF02678 Pirin BJD09_01130 PF05726 Pirin C-terminal cupin domain BJD09_01140 PF04493 Endonuclease V BJD09_01145 PF00300 Histidine phosphatase superfamily (branch 1) BJD09_01155 PF05649 Peptidase family M13 BJD09_01155 PF01431 Peptidase family M13 BJD09_01160 PF13091 PLD-like domain BJD09_01165 PF01339 CheB methylesterase BJD09_01165 PF00072 Response regulator receiver domain BJD09_01170 PF01739 CheR methyltransferase, SAM binding domain BJD09_01170 PF03705 CheR methyltransferase, all-alpha domain BJD09_01175 PF00990 Diguanylate cyclase, GGDEF domain BJD09_01175 PF00563 EAL domain BJD09_01175 PF13426 PAS domain BJD09_01180 PF01584 CheW-like domain BJD09_01185 PF00672 HAMP domain BJD09_01185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_01185 PF02203 Tar ligand binding domain homologue BJD09_01195 PF09078 CheY binding BJD09_01195 PF01627 Hpt domain BJD09_01195 PF01584 CheW-like domain BJD09_01195 PF02895 Signal transducing histidine kinase, homodimeric domain BJD09_01195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_01230 PF02559 CarD-like/TRCF domain BJD09_01230 PF00270 DEAD/DEAH box helicase BJD09_01230 PF00271 Helicase conserved C-terminal domain BJD09_01230 PF03461 TRCF domain BJD09_01230 PF17757 UvrB interaction domain BJD09_01240 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BJD09_01245 PF00486 Transcriptional regulatory protein, C terminal BJD09_01245 PF00072 Response regulator receiver domain BJD09_01250 PF00512 His Kinase A (phospho-acceptor) domain BJD09_01250 PF00672 HAMP domain BJD09_01250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_01260 PF06123 Inner membrane protein CreD BJD09_01285 PF00749 tRNA synthetases class I (E and Q), catalytic domain BJD09_01290 PF01475 Ferric uptake regulator family BJD09_01300 PF00529 HlyD membrane-fusion protein of T1SS BJD09_01300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD09_01305 PF00873 AcrB/AcrD/AcrF family BJD09_01310 PF02321 Outer membrane efflux protein BJD09_01315 PF00440 Bacterial regulatory proteins, tetR family BJD09_01315 PF16859 Tetracyclin repressor-like, C-terminal domain BJD09_01325 PF06719 AraC-type transcriptional regulator N-terminus BJD09_01325 PF12833 Helix-turn-helix domain BJD09_01335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_01335 PF03466 LysR substrate binding domain BJD09_01340 PF07690 Major Facilitator Superfamily BJD09_01350 PF00248 Aldo/keto reductase family BJD09_01360 PF01483 Proprotein convertase P-domain BJD09_01360 PF00082 Subtilase family BJD09_01370 PF00082 Subtilase family BJD09_01370 PF01483 Proprotein convertase P-domain BJD09_01380 PF00593 TonB dependent receptor BJD09_01380 PF07715 TonB-dependent Receptor Plug Domain BJD09_01400 PF00107 Zinc-binding dehydrogenase BJD09_01400 PF08240 Alcohol dehydrogenase GroES-like domain BJD09_01405 PF00654 Voltage gated chloride channel BJD09_01415 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BJD09_01415 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BJD09_01470 PF00271 Helicase conserved C-terminal domain BJD09_01470 PF03880 DbpA RNA binding domain BJD09_01470 PF00270 DEAD/DEAH box helicase BJD09_01475 PF00990 Diguanylate cyclase, GGDEF domain BJD09_01475 PF00563 EAL domain BJD09_01475 PF08448 PAS fold BJD09_01480 PF00849 RNA pseudouridylate synthase BJD09_01480 PF01479 S4 domain BJD09_01485 PF00990 Diguanylate cyclase, GGDEF domain BJD09_01485 PF00072 Response regulator receiver domain BJD09_01505 PF03737 Aldolase/RraA BJD09_01510 PF00144 Beta-lactamase BJD09_01515 PF00999 Sodium/hydrogen exchanger family BJD09_01520 PF00672 HAMP domain BJD09_01520 PF00512 His Kinase A (phospho-acceptor) domain BJD09_01520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_01525 PF00486 Transcriptional regulatory protein, C terminal BJD09_01525 PF00072 Response regulator receiver domain BJD09_01530 PF02321 Outer membrane efflux protein BJD09_01545 PF00873 AcrB/AcrD/AcrF family BJD09_01560 PF00005 ABC transporter BJD09_01560 PF00664 ABC transporter transmembrane region BJD09_01590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_01590 PF03466 LysR substrate binding domain BJD09_01600 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BJD09_01605 PF04070 Domain of unknown function (DUF378) BJD09_01635 PF00085 Thioredoxin BJD09_01645 PF00133 tRNA synthetases class I (I, L, M and V) BJD09_01645 PF13603 Leucyl-tRNA synthetase, Domain 2 BJD09_01645 PF08264 Anticodon-binding domain of tRNA BJD09_01660 PF01467 Cytidylyltransferase-like BJD09_01675 PF02590 Predicted SPOUT methyltransferase BJD09_01690 PF04402 Protein of unknown function (DUF541) BJD09_01695 PF02545 Maf-like protein BJD09_01700 PF10150 Ribonuclease E/G family BJD09_01700 PF00575 S1 RNA binding domain BJD09_01705 PF13502 AsmA-like C-terminal region BJD09_01705 PF13116 Protein of unknown function BJD09_01715 PF01523 Putative modulator of DNA gyrase BJD09_01720 PF04751 Protein of unknown function (DUF615) BJD09_01725 PF01523 Putative modulator of DNA gyrase BJD09_01735 PF14521 Lysine-specific metallo-endopeptidase BJD09_01740 PF00348 Polyprenyl synthetase BJD09_01745 PF02609 Exonuclease VII small subunit BJD09_01750 PF11734 TilS substrate C-terminal domain BJD09_01750 PF09179 TilS substrate binding domain BJD09_01750 PF01171 PP-loop family BJD09_01760 PF00245 Alkaline phosphatase BJD09_01780 PF00877 NlpC/P60 family BJD09_01785 PF00877 NlpC/P60 family BJD09_01790 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD09_01795 PF04235 Protein of unknown function (DUF418) BJD09_01800 PF01266 FAD dependent oxidoreductase BJD09_01805 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BJD09_01805 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD09_01810 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BJD09_01825 PF05649 Peptidase family M13 BJD09_01825 PF01431 Peptidase family M13 BJD09_01835 PF01431 Peptidase family M13 BJD09_01835 PF05649 Peptidase family M13 BJD09_01850 PF00593 TonB dependent receptor BJD09_01850 PF07715 TonB-dependent Receptor Plug Domain BJD09_01855 PF10609 NUBPL iron-transfer P-loop NTPase BJD09_01865 PF00692 dUTPase BJD09_01885 PF01738 Dienelactone hydrolase family BJD09_01890 PF04055 Radical SAM superfamily BJD09_01890 PF18693 TRAM domain BJD09_01890 PF00919 Uncharacterized protein family UPF0004 BJD09_01895 PF03449 Transcription elongation factor, N-terminal BJD09_01895 PF01272 Transcription elongation factor, GreA/GreB, C-term BJD09_01915 PF00293 NUDIX domain BJD09_01920 PF05872 Bacterial protein of unknown function (DUF853) BJD09_01935 PF02666 Phosphatidylserine decarboxylase BJD09_01940 PF02630 SCO1/SenC BJD09_01945 PF05175 Methyltransferase small domain BJD09_01950 PF01264 Chorismate synthase BJD09_01955 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BJD09_01955 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BJD09_01960 PF02774 Semialdehyde dehydrogenase, dimerisation domain BJD09_01960 PF01118 Semialdehyde dehydrogenase, NAD binding domain BJD09_01980 PF01416 tRNA pseudouridine synthase BJD09_01985 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BJD09_01990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_01990 PF03466 LysR substrate binding domain BJD09_01995 PF00291 Pyridoxal-phosphate dependent enzyme BJD09_02005 PF00290 Tryptophan synthase alpha chain BJD09_02010 PF17848 Acetyl-coA carboxylase zinc finger domain BJD09_02010 PF01039 Carboxyl transferase domain BJD09_02015 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BJD09_02015 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BJD09_02015 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BJD09_02015 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BJD09_02030 PF03707 Bacterial signalling protein N terminal repeat BJD09_02030 PF00990 Diguanylate cyclase, GGDEF domain BJD09_02030 PF00563 EAL domain BJD09_02045 PF00106 short chain dehydrogenase BJD09_02050 PF00121 Triosephosphate isomerase BJD09_02065 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BJD09_02070 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BJD09_02075 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BJD09_02080 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BJD09_02090 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BJD09_02090 PF10531 SLBB domain BJD09_02090 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BJD09_02095 PF00384 Molybdopterin oxidoreductase BJD09_02095 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BJD09_02095 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal BJD09_02100 PF00146 NADH dehydrogenase BJD09_02105 PF12838 4Fe-4S dicluster domain BJD09_02110 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BJD09_02115 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BJD09_02120 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BJD09_02120 PF00361 Proton-conducting membrane transporter BJD09_02125 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus BJD09_02125 PF00361 Proton-conducting membrane transporter BJD09_02130 PF00361 Proton-conducting membrane transporter BJD09_02140 PF17384 RimP C-terminal SH3 domain BJD09_02140 PF02576 RimP N-terminal domain BJD09_02145 PF00575 S1 RNA binding domain BJD09_02145 PF08529 NusA N-terminal domain BJD09_02145 PF13184 NusA-like KH domain BJD09_02150 PF04760 Translation initiation factor IF-2, N-terminal region BJD09_02150 PF00009 Elongation factor Tu GTP binding domain BJD09_02150 PF08364 Bacterial translation initiation factor IF-2 associated region BJD09_02150 PF11987 Translation-initiation factor 2 BJD09_02155 PF02033 Ribosome-binding factor A BJD09_02160 PF09157 Pseudouridine synthase II TruB, C-terminal BJD09_02160 PF16198 tRNA pseudouridylate synthase B C-terminal domain BJD09_02160 PF01509 TruB family pseudouridylate synthase (N terminal domain) BJD09_02165 PF00312 Ribosomal protein S15 BJD09_02170 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BJD09_02170 PF00575 S1 RNA binding domain BJD09_02170 PF00013 KH domain BJD09_02170 PF01138 3' exoribonuclease family, domain 1 BJD09_02170 PF03725 3' exoribonuclease family, domain 2 BJD09_02180 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BJD09_02180 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BJD09_02190 PF00731 AIR carboxylase BJD09_02195 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BJD09_02195 PF02222 ATP-grasp domain BJD09_02200 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BJD09_02200 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BJD09_02205 PF00462 Glutaredoxin BJD09_02215 PF01914 MarC family integral membrane protein BJD09_02225 PF00593 TonB dependent receptor BJD09_02230 PF03641 Possible lysine decarboxylase BJD09_02230 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases BJD09_02230 PF11892 Domain of unknown function (DUF3412) BJD09_02235 PF06580 Histidine kinase BJD09_02235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_02235 PF07694 5TMR of 5TMR-LYT BJD09_02260 PF05567 Neisseria PilC beta-propeller domain BJD09_02265 PF00114 Pilin (bacterial filament) BJD09_02265 PF07963 Prokaryotic N-terminal methylation motif BJD09_02335 PF00182 Chitinase class I BJD09_02395 PF01527 Transposase BJD09_02495 PF00271 Helicase conserved C-terminal domain BJD09_02495 PF12344 Ultra-violet resistance protein B BJD09_02495 PF02151 UvrB/uvrC motif BJD09_02495 PF04851 Type III restriction enzyme, res subunit BJD09_02495 PF17757 UvrB interaction domain BJD09_02510 PF02534 Type IV secretory system Conjugative DNA transfer BJD09_02530 PF03743 Bacterial conjugation TrbI-like protein BJD09_02535 PF00437 Type II/IV secretion system protein BJD09_02540 PF01464 Transglycosylase SLT domain BJD09_02550 PF05101 Type IV secretory pathway, VirB3-like protein BJD09_02555 PF03135 CagE, TrbE, VirB family, component of type IV transporter system BJD09_02610 PF01527 Transposase BJD09_02615 PF00128 Alpha amylase, catalytic domain BJD09_02625 PF01527 Transposase BJD09_02640 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation BJD09_02640 PF14508 Glycosyl-hydrolase 97 N-terminal BJD09_02640 PF10566 Glycoside hydrolase 97 BJD09_02650 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BJD09_02655 PF00686 Starch binding domain BJD09_02655 PF00128 Alpha amylase, catalytic domain BJD09_02660 PF00356 Bacterial regulatory proteins, lacI family BJD09_02665 PF03129 Anticodon binding domain BJD09_02665 PF02824 TGS domain BJD09_02665 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BJD09_02665 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BJD09_02670 PF00707 Translation initiation factor IF-3, C-terminal domain BJD09_02670 PF05198 Translation initiation factor IF-3, N-terminal domain BJD09_02675 PF01632 Ribosomal protein L35 BJD09_02680 PF00453 Ribosomal protein L20 BJD09_02685 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BJD09_02685 PF01409 tRNA synthetases class II core domain (F) BJD09_02690 PF01588 Putative tRNA binding domain BJD09_02690 PF03147 Ferredoxin-fold anticodon binding domain BJD09_02690 PF03484 tRNA synthetase B5 domain BJD09_02690 PF03483 B3/4 domain BJD09_02690 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BJD09_02695 PF00216 Bacterial DNA-binding protein BJD09_02700 PF13411 MerR HTH family regulatory protein BJD09_02720 PF02397 Bacterial sugar transferase BJD09_02740 PF00534 Glycosyl transferases group 1 BJD09_02740 PF13439 Glycosyltransferase Family 4 BJD09_02750 PF14667 Polysaccharide biosynthesis C-terminal domain BJD09_02765 PF03808 Glycosyl transferase WecB/TagA/CpsF family BJD09_02780 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BJD09_02780 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BJD09_02785 PF00753 Metallo-beta-lactamase superfamily BJD09_02785 PF16123 Hydroxyacylglutathione hydrolase C-terminus BJD09_02790 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BJD09_02810 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BJD09_02810 PF02779 Transketolase, pyrimidine binding domain BJD09_02810 PF02780 Transketolase, C-terminal domain BJD09_02820 PF12806 Acetyl-CoA dehydrogenase C-terminal like BJD09_02820 PF02770 Acyl-CoA dehydrogenase, middle domain BJD09_02820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD09_02820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD09_02835 PF08212 Lipocalin-like domain BJD09_02865 PF00072 Response regulator receiver domain BJD09_02865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_02865 PF13426 PAS domain BJD09_02870 PF04362 Bacterial Fe(2+) trafficking BJD09_02875 PF00633 Helix-hairpin-helix motif BJD09_02875 PF10576 Iron-sulfur binding domain of endonuclease III BJD09_02875 PF14815 NUDIX domain BJD09_02875 PF00730 HhH-GPD superfamily base excision DNA repair protein BJD09_02885 PF02881 SRP54-type protein, helical bundle domain BJD09_02885 PF00448 SRP54-type protein, GTPase domain BJD09_02895 PF05544 Proline racemase BJD09_02900 PF01266 FAD dependent oxidoreductase BJD09_02910 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD09_02910 PF04324 BFD-like [2Fe-2S] binding domain BJD09_02915 PF00701 Dihydrodipicolinate synthetase family BJD09_02920 PF00171 Aldehyde dehydrogenase family BJD09_02925 PF01321 Creatinase/Prolidase N-terminal domain BJD09_02925 PF00557 Metallopeptidase family M24 BJD09_02940 PF13520 Amino acid permease BJD09_02970 PF00082 Subtilase family BJD09_02970 PF09286 Pro-kumamolisin, activation domain BJD09_02980 PF00593 TonB dependent receptor BJD09_02980 PF07715 TonB-dependent Receptor Plug Domain BJD09_02985 PF07532 Bacterial Ig-like domain (group 4) BJD09_02990 PF04616 Glycosyl hydrolases family 43 BJD09_03000 PF07715 TonB-dependent Receptor Plug Domain BJD09_03000 PF00593 TonB dependent receptor BJD09_03020 PF00183 Hsp90 protein BJD09_03020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_03030 PF01467 Cytidylyltransferase-like BJD09_03045 PF00037 4Fe-4S binding domain BJD09_03055 PF00759 Glycosyl hydrolase family 9 BJD09_03055 PF02927 Cellulase N-terminal ig-like domain BJD09_03095 PF02547 Queuosine biosynthesis protein BJD09_03100 PF01702 Queuine tRNA-ribosyltransferase BJD09_03105 PF02699 Preprotein translocase subunit BJD09_03110 PF13721 SecD export protein N-terminal TM region BJD09_03110 PF07549 SecD/SecF GG Motif BJD09_03110 PF02355 Protein export membrane protein BJD09_03115 PF02355 Protein export membrane protein BJD09_03115 PF07549 SecD/SecF GG Motif BJD09_03160 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BJD09_03165 PF00294 pfkB family carbohydrate kinase BJD09_03170 PF00391 PEP-utilising enzyme, mobile domain BJD09_03170 PF05524 PEP-utilising enzyme, N-terminal BJD09_03170 PF02896 PEP-utilising enzyme, TIM barrel domain BJD09_03170 PF00381 PTS HPr component phosphorylation site BJD09_03170 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BJD09_03175 PF00356 Bacterial regulatory proteins, lacI family BJD09_03180 PF00873 AcrB/AcrD/AcrF family BJD09_03185 PF00529 HlyD membrane-fusion protein of T1SS BJD09_03185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD09_03195 PF05088 Bacterial NAD-glutamate dehydrogenase BJD09_03205 PF07690 Major Facilitator Superfamily BJD09_03210 PF00072 Response regulator receiver domain BJD09_03215 PF01627 Hpt domain BJD09_03215 PF00512 His Kinase A (phospho-acceptor) domain BJD09_03215 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BJD09_03215 PF00672 HAMP domain BJD09_03215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_03215 PF00072 Response regulator receiver domain BJD09_03220 PF04286 Protein of unknown function (DUF445) BJD09_03230 PF00202 Aminotransferase class-III BJD09_03245 PF07690 Major Facilitator Superfamily BJD09_03250 PF02634 FdhD/NarQ family BJD09_03255 PF00384 Molybdopterin oxidoreductase BJD09_03265 PF07690 Major Facilitator Superfamily BJD09_03265 PF00083 Sugar (and other) transporter BJD09_03270 PF01814 Hemerythrin HHE cation binding domain BJD09_03275 PF00072 Response regulator receiver domain BJD09_03275 PF00990 Diguanylate cyclase, GGDEF domain BJD09_03280 PF01266 FAD dependent oxidoreductase BJD09_03285 PF00120 Glutamine synthetase, catalytic domain BJD09_03290 PF07722 Peptidase C26 BJD09_03295 PF00120 Glutamine synthetase, catalytic domain BJD09_03300 PF00202 Aminotransferase class-III BJD09_03305 PF13416 Bacterial extracellular solute-binding protein BJD09_03310 PF13533 Biotin-lipoyl like BJD09_03315 PF07690 Major Facilitator Superfamily BJD09_03320 PF02321 Outer membrane efflux protein BJD09_03325 PF08402 TOBE domain BJD09_03325 PF00005 ABC transporter BJD09_03330 PF00528 Binding-protein-dependent transport system inner membrane component BJD09_03335 PF00528 Binding-protein-dependent transport system inner membrane component BJD09_03340 PF00171 Aldehyde dehydrogenase family BJD09_03355 PF03471 Transporter associated domain BJD09_03355 PF00571 CBS domain BJD09_03365 PF02130 Uncharacterized protein family UPF0054 BJD09_03375 PF02562 PhoH-like protein BJD09_03380 PF01938 TRAM domain BJD09_03380 PF04055 Radical SAM superfamily BJD09_03380 PF00919 Uncharacterized protein family UPF0004 BJD09_03395 PF01464 Transglycosylase SLT domain BJD09_03405 PF00355 Rieske [2Fe-2S] domain BJD09_03405 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BJD09_03410 PF00032 Cytochrome b(C-terminal)/b6/petD BJD09_03410 PF00033 Cytochrome b/b6/petB BJD09_03415 PF02167 Cytochrome C1 family BJD09_03420 PF02798 Glutathione S-transferase, N-terminal domain BJD09_03420 PF00043 Glutathione S-transferase, C-terminal domain BJD09_03425 PF04386 Stringent starvation protein B BJD09_03445 PF00270 DEAD/DEAH box helicase BJD09_03445 PF08494 DEAD/H associated BJD09_03445 PF00271 Helicase conserved C-terminal domain BJD09_03450 PF02245 Methylpurine-DNA glycosylase (MPG) BJD09_03455 PF02743 Cache domain BJD09_03455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_03455 PF00672 HAMP domain BJD09_03460 PF01584 CheW-like domain BJD09_03510 PF09572 XamI restriction endonuclease BJD09_03515 PF02384 N-6 DNA Methylase BJD09_03530 PF02796 Helix-turn-helix domain of resolvase BJD09_03530 PF00239 Resolvase, N terminal domain BJD09_03535 PF13333 Integrase core domain BJD09_03535 PF00665 Integrase core domain BJD09_03535 PF13276 HTH-like domain BJD09_03550 PF00171 Aldehyde dehydrogenase family BJD09_03550 PF14850 DNA-binding domain of Proline dehydrogenase BJD09_03550 PF01619 Proline dehydrogenase BJD09_03550 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BJD09_03570 PF01527 Transposase BJD09_03580 PF05598 Transposase domain (DUF772) BJD09_03605 PF00589 Phage integrase family BJD09_03625 PF13298 DNA polymerase Ligase (LigD) BJD09_03625 PF01068 ATP dependent DNA ligase domain BJD09_03625 PF04679 ATP dependent DNA ligase C terminal region BJD09_03630 PF00570 HRDC domain BJD09_03630 PF01612 3'-5' exonuclease BJD09_03645 PF03781 Sulfatase-modifying factor enzyme 1 BJD09_03655 PF13742 OB-fold nucleic acid binding domain BJD09_03655 PF02601 Exonuclease VII, large subunit BJD09_03660 PF08331 Domain of unknown function (DUF1730) BJD09_03665 PF03853 YjeF-related protein N-terminus BJD09_03665 PF01256 Carbohydrate kinase BJD09_03670 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BJD09_03675 PF11741 AMIN domain BJD09_03675 PF01520 N-acetylmuramoyl-L-alanine amidase BJD09_03680 PF01119 DNA mismatch repair protein, C-terminal domain BJD09_03680 PF08676 MutL C terminal dimerisation domain BJD09_03700 PF07879 PHB/PHA accumulation regulator DNA-binding domain BJD09_03700 PF05233 PHB accumulation regulatory domain BJD09_03705 PF00106 short chain dehydrogenase BJD09_03710 PF00749 tRNA synthetases class I (E and Q), catalytic domain BJD09_03715 PF01435 Peptidase family M48 BJD09_03720 PF00072 Response regulator receiver domain BJD09_03720 PF00990 Diguanylate cyclase, GGDEF domain BJD09_03720 PF00563 EAL domain BJD09_03730 PF07152 YaeQ protein BJD09_03735 PF00313 'Cold-shock' DNA-binding domain BJD09_03740 PF02798 Glutathione S-transferase, N-terminal domain BJD09_03740 PF14497 Glutathione S-transferase, C-terminal domain BJD09_03745 PF00135 Carboxylesterase family BJD09_03750 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BJD09_03755 PF00156 Phosphoribosyl transferase domain BJD09_03760 PF03880 DbpA RNA binding domain BJD09_03760 PF00270 DEAD/DEAH box helicase BJD09_03760 PF00271 Helicase conserved C-terminal domain BJD09_03780 PF00545 ribonuclease BJD09_03790 PF00459 Inositol monophosphatase family BJD09_03795 PF00588 SpoU rRNA Methylase family BJD09_03805 PF00990 Diguanylate cyclase, GGDEF domain BJD09_03805 PF00563 EAL domain BJD09_03805 PF13188 PAS domain BJD09_03805 PF03707 Bacterial signalling protein N terminal repeat BJD09_03810 PF04055 Radical SAM superfamily BJD09_03815 PF08207 Elongation factor P (EF-P) KOW-like domain BJD09_03815 PF01132 Elongation factor P (EF-P) OB domain BJD09_03815 PF09285 Elongation factor P, C-terminal BJD09_03825 PF01979 Amidohydrolase family BJD09_03835 PF13419 Haloacid dehalogenase-like hydrolase BJD09_03845 PF00295 Glycosyl hydrolases family 28 BJD09_03860 PF01527 Transposase BJD09_03885 PF00753 Metallo-beta-lactamase superfamily BJD09_03895 PF05985 Ethanolamine ammonia-lyase light chain (EutC) BJD09_03900 PF06751 Ethanolamine ammonia lyase large subunit (EutB) BJD09_03920 PF08460 Bacterial SH3 domain BJD09_03920 PF01551 Peptidase family M23 BJD09_03925 PF01979 Amidohydrolase family BJD09_03930 PF01809 Putative membrane protein insertion efficiency factor BJD09_03935 PF01258 Prokaryotic dksA/traR C4-type zinc finger BJD09_03945 PF02657 Fe-S metabolism associated domain BJD09_03950 PF09190 DALR domain BJD09_03950 PF01406 tRNA synthetases class I (C) catalytic domain BJD09_03960 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BJD09_03960 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BJD09_03965 PF00764 Arginosuccinate synthase BJD09_03980 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase BJD09_03980 PF00696 Amino acid kinase family BJD09_03990 PF01118 Semialdehyde dehydrogenase, NAD binding domain BJD09_03995 PF00206 Lyase BJD09_04010 PF00171 Aldehyde dehydrogenase family BJD09_04040 PF02322 Cytochrome bd terminal oxidase subunit II BJD09_04045 PF01654 Cytochrome bd terminal oxidase subunit I BJD09_04050 PF00664 ABC transporter transmembrane region BJD09_04050 PF00005 ABC transporter BJD09_04055 PF00005 ABC transporter BJD09_04055 PF00664 ABC transporter transmembrane region BJD09_04060 PF00313 'Cold-shock' DNA-binding domain BJD09_04065 PF00561 alpha/beta hydrolase fold BJD09_04075 PF03918 Cytochrome C biogenesis protein BJD09_04080 PF08534 Redoxin BJD09_04085 PF01578 Cytochrome C assembly protein BJD09_04085 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BJD09_04090 PF03100 CcmE BJD09_04100 PF01578 Cytochrome C assembly protein BJD09_04105 PF03379 CcmB protein BJD09_04110 PF00005 ABC transporter BJD09_04115 PF00155 Aminotransferase class I and II BJD09_04120 PF00795 Carbon-nitrogen hydrolase BJD09_04135 PF00849 RNA pseudouridylate synthase BJD09_04135 PF01479 S4 domain BJD09_04140 PF04079 Segregation and condensation complex subunit ScpB BJD09_04145 PF02616 Segregation and condensation protein ScpA BJD09_04150 PF03795 YCII-related domain BJD09_04160 PF00356 Bacterial regulatory proteins, lacI family BJD09_04180 PF00528 Binding-protein-dependent transport system inner membrane component BJD09_04185 PF00528 Binding-protein-dependent transport system inner membrane component BJD09_04210 PF00795 Carbon-nitrogen hydrolase BJD09_04215 PF04371 Porphyromonas-type peptidyl-arginine deiminase BJD09_04230 PF00444 Ribosomal protein L36 BJD09_04235 PF02224 Cytidylate kinase BJD09_04240 PF00575 S1 RNA binding domain BJD09_04245 PF00216 Bacterial DNA-binding protein BJD09_04255 PF18073 Rubredoxin metal binding domain BJD09_04260 PF00953 Glycosyl transferase family 4 BJD09_04265 PF02719 Polysaccharide biosynthesis protein BJD09_04270 PF00483 Nucleotidyl transferase BJD09_04275 PF02254 TrkA-N domain BJD09_04275 PF00999 Sodium/hydrogen exchanger family BJD09_04285 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BJD09_04285 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BJD09_04290 PF00478 IMP dehydrogenase / GMP reductase domain BJD09_04290 PF00571 CBS domain BJD09_04295 PF02540 NAD synthase BJD09_04295 PF00117 Glutamine amidotransferase class-I BJD09_04295 PF00958 GMP synthase C terminal domain BJD09_04300 PF00589 Phage integrase family BJD09_04300 PF13356 Arm DNA-binding domain BJD09_04335 PF04002 RadC-like JAB domain BJD09_04350 PF03401 Tripartite tricarboxylate transporter family receptor BJD09_04355 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BJD09_04355 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BJD09_04360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_04360 PF03466 LysR substrate binding domain BJD09_04435 PF12462 DNA helicase IV / RNA helicase N terminal BJD09_04435 PF00580 UvrD/REP helicase N-terminal domain BJD09_04435 PF13361 UvrD-like helicase C-terminal domain BJD09_04585 PF12833 Helix-turn-helix domain BJD09_04585 PF02311 AraC-like ligand binding domain BJD09_04590 PF07690 Major Facilitator Superfamily BJD09_04600 PF03358 NADPH-dependent FMN reductase BJD09_04605 PF05544 Proline racemase BJD09_04610 PF00043 Glutathione S-transferase, C-terminal domain BJD09_04610 PF02798 Glutathione S-transferase, N-terminal domain BJD09_04615 PF02525 Flavodoxin-like fold BJD09_04625 PF00892 EamA-like transporter family BJD09_04630 PF00892 EamA-like transporter family BJD09_04645 PF17761 DUF1016 N-terminal domain BJD09_04645 PF06250 YhcG PDDEXK nuclease domain BJD09_04695 PF00145 C-5 cytosine-specific DNA methylase BJD09_04700 PF01751 Toprim domain BJD09_04700 PF01131 DNA topoisomerase BJD09_04740 PF13614 AAA domain BJD09_04750 PF00664 ABC transporter transmembrane region BJD09_04750 PF00005 ABC transporter BJD09_04750 PF03412 Peptidase C39 family BJD09_04770 PF00722 Glycosyl hydrolases family 16 BJD09_04770 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) BJD09_04780 PF10947 Protein of unknown function (DUF2628) BJD09_04790 PF07715 TonB-dependent Receptor Plug Domain BJD09_04790 PF00593 TonB dependent receptor BJD09_04815 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BJD09_04835 PF07715 TonB-dependent Receptor Plug Domain BJD09_04835 PF00593 TonB dependent receptor BJD09_04850 PF13356 Arm DNA-binding domain BJD09_04850 PF00589 Phage integrase family BJD09_04875 PF04002 RadC-like JAB domain BJD09_04880 PF05284 Protein of unknown function (DUF736) BJD09_04885 PF01381 Helix-turn-helix BJD09_04900 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) BJD09_04905 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BJD09_04905 PF00361 Proton-conducting membrane transporter BJD09_04905 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus BJD09_04910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_04910 PF03466 LysR substrate binding domain BJD09_04925 PF00072 Response regulator receiver domain BJD09_04925 PF00196 Bacterial regulatory proteins, luxR family BJD09_04940 PF00857 Isochorismatase family BJD09_04955 PF05977 Transmembrane secretion effector BJD09_04970 PF10414 Sirohaem synthase dimerisation region BJD09_04970 PF14824 Sirohaem biosynthesis protein central BJD09_04970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BJD09_04995 PF05974 Domain of unknown function (DUF892) BJD09_05015 PF08448 PAS fold BJD09_05015 PF08447 PAS fold BJD09_05015 PF00563 EAL domain BJD09_05015 PF00990 Diguanylate cyclase, GGDEF domain BJD09_05020 PF12951 Passenger-associated-transport-repeat BJD09_05020 PF12951 Passenger-associated-transport-repeat BJD09_05025 PF00072 Response regulator receiver domain BJD09_05025 PF00196 Bacterial regulatory proteins, luxR family BJD09_05030 PF08448 PAS fold BJD09_05030 PF13426 PAS domain BJD09_05030 PF00072 Response regulator receiver domain BJD09_05030 PF00512 His Kinase A (phospho-acceptor) domain BJD09_05030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_05040 PF00873 AcrB/AcrD/AcrF family BJD09_05045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD09_05055 PF03797 Autotransporter beta-domain BJD09_05055 PF00082 Subtilase family BJD09_05070 PF06580 Histidine kinase BJD09_05070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_05070 PF07694 5TMR of 5TMR-LYT BJD09_05075 PF00072 Response regulator receiver domain BJD09_05075 PF04397 LytTr DNA-binding domain BJD09_05085 PF00144 Beta-lactamase BJD09_05095 PF07995 Glucose / Sorbosone dehydrogenase BJD09_05110 PF09335 SNARE associated Golgi protein BJD09_05115 PF01494 FAD binding domain BJD09_05160 PF02303 Helix-destabilising protein BJD09_05195 PF00106 short chain dehydrogenase BJD09_05250 PF01106 NifU-like domain BJD09_05255 PF01329 Pterin 4 alpha carbinolamine dehydratase BJD09_05265 PF02535 ZIP Zinc transporter BJD09_05270 PF11737 Protein of unknown function (DUF3300) BJD09_05275 PF01479 S4 domain BJD09_05275 PF00849 RNA pseudouridylate synthase BJD09_05280 PF00575 S1 RNA binding domain BJD09_05280 PF10150 Ribonuclease E/G family BJD09_05280 PF12111 Polyribonucleotide phosphorylase C terminal BJD09_05285 PF00196 Bacterial regulatory proteins, luxR family BJD09_05285 PF00072 Response regulator receiver domain BJD09_05300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD09_05310 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BJD09_05310 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BJD09_05310 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BJD09_05320 PF00589 Phage integrase family BJD09_05330 PF13276 HTH-like domain BJD09_05330 PF00665 Integrase core domain BJD09_05330 PF13333 Integrase core domain BJD09_05340 PF01527 Transposase BJD09_05350 PF17837 4'-phosphopantetheinyl transferase N-terminal domain BJD09_05350 PF01648 4'-phosphopantetheinyl transferase superfamily BJD09_05355 PF00668 Condensation domain BJD09_05355 PF00501 AMP-binding enzyme BJD09_05355 PF13193 AMP-binding enzyme C-terminal domain BJD09_05355 PF00975 Thioesterase domain BJD09_05355 PF00550 Phosphopantetheine attachment site BJD09_05360 PF00501 AMP-binding enzyme BJD09_05360 PF13193 AMP-binding enzyme C-terminal domain BJD09_05360 PF00668 Condensation domain BJD09_05360 PF00550 Phosphopantetheine attachment site BJD09_05380 PF01066 CDP-alcohol phosphatidyltransferase BJD09_05385 PF01541 GIY-YIG catalytic domain BJD09_05385 PF08459 UvrC Helix-hairpin-helix N-terminal BJD09_05385 PF02151 UvrB/uvrC motif BJD09_05395 PF01451 Low molecular weight phosphotyrosine protein phosphatase BJD09_05400 PF02348 Cytidylyltransferase BJD09_05405 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BJD09_05410 PF00664 ABC transporter transmembrane region BJD09_05410 PF00005 ABC transporter BJD09_05420 PF01618 MotA/TolQ/ExbB proton channel family BJD09_05425 PF03772 Competence protein BJD09_05425 PF00753 Metallo-beta-lactamase superfamily BJD09_05435 PF00005 ABC transporter BJD09_05440 PF12704 MacB-like periplasmic core domain BJD09_05440 PF02687 FtsX-like permease family BJD09_05450 PF03937 Flavinator of succinate dehydrogenase BJD09_05455 PF13085 2Fe-2S iron-sulfur cluster binding domain BJD09_05465 PF00890 FAD binding domain BJD09_05465 PF02910 Fumarate reductase flavoprotein C-term BJD09_05470 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BJD09_05475 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BJD09_05490 PF00005 ABC transporter BJD09_05490 PF17912 MalK OB fold domain BJD09_05495 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BJD09_05495 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BJD09_05500 PF02685 Glucokinase BJD09_05505 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BJD09_05510 PF00920 Dehydratase family BJD09_05515 PF01081 KDPG and KHG aldolase BJD09_05525 PF00873 AcrB/AcrD/AcrF family BJD09_05530 PF00873 AcrB/AcrD/AcrF family BJD09_05535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD09_05545 PF00034 Cytochrome c BJD09_05595 PF00072 Response regulator receiver domain BJD09_05595 PF00512 His Kinase A (phospho-acceptor) domain BJD09_05595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_05595 PF09308 LuxQ, periplasmic BJD09_05600 PF16921 Tex protein YqgF-like domain BJD09_05600 PF09371 Tex-like protein N-terminal domain BJD09_05600 PF00575 S1 RNA binding domain BJD09_05600 PF17674 HHH domain BJD09_05610 PF00355 Rieske [2Fe-2S] domain BJD09_05610 PF01266 FAD dependent oxidoreductase BJD09_05625 PF00561 alpha/beta hydrolase fold BJD09_05635 PF01066 CDP-alcohol phosphatidyltransferase BJD09_05655 PF03618 Kinase/pyrophosphorylase BJD09_05660 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BJD09_05660 PF02896 PEP-utilising enzyme, TIM barrel domain BJD09_05660 PF00391 PEP-utilising enzyme, mobile domain BJD09_05665 PF00924 Mechanosensitive ion channel BJD09_05665 PF05552 Conserved TM helix BJD09_05670 PF00929 Exonuclease BJD09_05675 PF14437 MafB19-like deaminase BJD09_05680 PF02742 Iron dependent repressor, metal binding and dimerisation domain BJD09_05680 PF01325 Iron dependent repressor, N-terminal DNA binding domain BJD09_05685 PF01566 Natural resistance-associated macrophage protein BJD09_05690 PF00561 alpha/beta hydrolase fold BJD09_05700 PF12804 MobA-like NTP transferase domain BJD09_05705 PF00994 Probable molybdopterin binding domain BJD09_05705 PF03453 MoeA N-terminal region (domain I and II) BJD09_05705 PF03454 MoeA C-terminal region (domain IV) BJD09_05715 PF03372 Endonuclease/Exonuclease/phosphatase family BJD09_05725 PF13823 Alcohol dehydrogenase GroES-associated BJD09_05725 PF00107 Zinc-binding dehydrogenase BJD09_05725 PF08240 Alcohol dehydrogenase GroES-like domain BJD09_05755 PF00899 ThiF family BJD09_05760 PF00994 Probable molybdopterin binding domain BJD09_05760 PF03454 MoeA C-terminal region (domain IV) BJD09_05760 PF03453 MoeA N-terminal region (domain I and II) BJD09_05765 PF01926 50S ribosome-binding GTPase BJD09_05765 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BJD09_05770 PF01011 PQQ enzyme repeat BJD09_05770 PF13360 PQQ-like domain BJD09_05780 PF13464 Domain of unknown function (DUF4115) BJD09_05790 PF04055 Radical SAM superfamily BJD09_05795 PF00334 Nucleoside diphosphate kinase BJD09_05805 PF00378 Enoyl-CoA hydratase/isomerase BJD09_05805 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BJD09_05805 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BJD09_05810 PF02803 Thiolase, C-terminal domain BJD09_05810 PF00108 Thiolase, N-terminal domain BJD09_05820 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BJD09_05825 PF16193 AAA C-terminal domain BJD09_05825 PF00004 ATPase family associated with various cellular activities (AAA) BJD09_05825 PF12002 MgsA AAA+ ATPase C terminal BJD09_05835 PF03548 Outer membrane lipoprotein carrier protein LolA BJD09_05845 PF09397 Ftsk gamma domain BJD09_05845 PF17854 FtsK alpha domain BJD09_05845 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BJD09_05845 PF01580 FtsK/SpoIIIE family BJD09_05850 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD09_05860 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BJD09_05865 PF01176 Translation initiation factor 1A / IF-1 BJD09_05870 PF02861 Clp amino terminal domain, pathogenicity island component BJD09_05870 PF17871 AAA lid domain BJD09_05870 PF07724 AAA domain (Cdc48 subfamily) BJD09_05870 PF10431 C-terminal, D2-small domain, of ClpB protein BJD09_05870 PF00004 ATPase family associated with various cellular activities (AAA) BJD09_05875 PF02617 ATP-dependent Clp protease adaptor protein ClpS BJD09_05880 PF00293 NUDIX domain BJD09_05890 PF04356 Protein of unknown function (DUF489) BJD09_05895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_05895 PF00672 HAMP domain BJD09_05895 PF12729 Four helix bundle sensory module for signal transduction BJD09_05905 PF00990 Diguanylate cyclase, GGDEF domain BJD09_05905 PF00563 EAL domain BJD09_05905 PF03707 Bacterial signalling protein N terminal repeat BJD09_05910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_05910 PF07730 Histidine kinase BJD09_05915 PF03707 Bacterial signalling protein N terminal repeat BJD09_05915 PF00563 EAL domain BJD09_05915 PF00990 Diguanylate cyclase, GGDEF domain BJD09_05920 PF00989 PAS fold BJD09_05920 PF13188 PAS domain BJD09_05920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_05920 PF00512 His Kinase A (phospho-acceptor) domain BJD09_05920 PF13426 PAS domain BJD09_05940 PF00072 Response regulator receiver domain BJD09_05940 PF01584 CheW-like domain BJD09_05950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BJD09_05950 PF00460 Flagella basal body rod protein BJD09_05955 PF03963 Flagellar hook capping protein - N-terminal region BJD09_05960 PF00460 Flagella basal body rod protein BJD09_05960 PF07559 Flagellar basal body protein FlaE BJD09_05960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BJD09_05965 PF00460 Flagella basal body rod protein BJD09_05965 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BJD09_05975 PF00460 Flagella basal body rod protein BJD09_05975 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BJD09_05980 PF02107 Flagellar L-ring protein BJD09_05985 PF02119 Flagellar P-ring protein BJD09_05990 PF10135 Rod binding protein BJD09_05990 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BJD09_05995 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BJD09_05995 PF07196 Flagellin hook IN motif BJD09_06000 PF00669 Bacterial flagellin N-terminal helical region BJD09_06000 PF00700 Bacterial flagellin C-terminal helical region BJD09_06005 PF00700 Bacterial flagellin C-terminal helical region BJD09_06005 PF00669 Bacterial flagellin N-terminal helical region BJD09_06010 PF07196 Flagellin hook IN motif BJD09_06010 PF07195 Flagellar hook-associated protein 2 C-terminus BJD09_06010 PF02465 Flagellar hook-associated protein 2 N-terminus BJD09_06015 PF02561 Flagellar protein FliS BJD09_06030 PF00196 Bacterial regulatory proteins, luxR family BJD09_06030 PF00072 Response regulator receiver domain BJD09_06035 PF04963 Sigma-54 factor, core binding domain BJD09_06035 PF04552 Sigma-54, DNA binding domain BJD09_06035 PF00309 Sigma-54 factor, Activator interacting domain (AID) BJD09_06040 PF00072 Response regulator receiver domain BJD09_06040 PF01339 CheB methylesterase BJD09_06045 PF00072 Response regulator receiver domain BJD09_06045 PF00158 Sigma-54 interaction domain BJD09_06045 PF02954 Bacterial regulatory protein, Fis family BJD09_06050 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BJD09_06060 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BJD09_06060 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BJD09_06095 PF00535 Glycosyl transferase family 2 BJD09_06095 PF00534 Glycosyl transferases group 1 BJD09_06100 PF02049 Flagellar hook-basal body complex protein FliE BJD09_06105 PF08345 Flagellar M-ring protein C-terminal BJD09_06105 PF01514 Secretory protein of YscJ/FliF family BJD09_06110 PF01706 FliG C-terminal domain BJD09_06110 PF14842 FliG N-terminal domain BJD09_06110 PF14841 FliG middle domain BJD09_06120 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BJD09_06120 PF18269 T3SS EscN ATPase C-terminal domain BJD09_06140 PF02154 Flagellar motor switch protein FliM BJD09_06140 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BJD09_06145 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BJD09_06150 PF04347 Flagellar biosynthesis protein, FliO BJD09_06155 PF00813 FliP family BJD09_06165 PF01313 Bacterial export proteins, family 3 BJD09_06170 PF01311 Bacterial export proteins, family 1 BJD09_06175 PF00563 EAL domain BJD09_06175 PF00990 Diguanylate cyclase, GGDEF domain BJD09_06175 PF13188 PAS domain BJD09_06175 PF03707 Bacterial signalling protein N terminal repeat BJD09_06185 PF00563 EAL domain BJD09_06185 PF00990 Diguanylate cyclase, GGDEF domain BJD09_06185 PF03707 Bacterial signalling protein N terminal repeat BJD09_06185 PF13188 PAS domain BJD09_06190 PF00990 Diguanylate cyclase, GGDEF domain BJD09_06190 PF03707 Bacterial signalling protein N terminal repeat BJD09_06190 PF00563 EAL domain BJD09_06195 PF01312 FlhB HrpN YscU SpaS Family BJD09_06200 PF00771 FHIPEP family BJD09_06205 PF00448 SRP54-type protein, GTPase domain BJD09_06210 PF10609 NUBPL iron-transfer P-loop NTPase BJD09_06215 PF04539 Sigma-70 region 3 BJD09_06215 PF04542 Sigma-70 region 2 BJD09_06215 PF04545 Sigma-70, region 4 BJD09_06220 PF00072 Response regulator receiver domain BJD09_06225 PF04344 Chemotaxis phosphatase, CheZ BJD09_06230 PF02895 Signal transducing histidine kinase, homodimeric domain BJD09_06230 PF01584 CheW-like domain BJD09_06230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_06230 PF01627 Hpt domain BJD09_06230 PF07194 P2 response regulator binding domain BJD09_06250 PF13186 Iron-sulfur cluster-binding domain BJD09_06250 PF04055 Radical SAM superfamily BJD09_06285 PF00665 Integrase core domain BJD09_06285 PF13333 Integrase core domain BJD09_06285 PF13276 HTH-like domain BJD09_06290 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) BJD09_06345 PF03793 PASTA domain BJD09_06345 PF00069 Protein kinase domain BJD09_06365 PF01618 MotA/TolQ/ExbB proton channel family BJD09_06370 PF00691 OmpA family BJD09_06370 PF13677 Membrane MotB of proton-channel complex MotA/MotB BJD09_06375 PF13614 AAA domain BJD09_06380 PF01584 CheW-like domain BJD09_06390 PF00072 Response regulator receiver domain BJD09_06395 PF02895 Signal transducing histidine kinase, homodimeric domain BJD09_06395 PF01584 CheW-like domain BJD09_06395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_06395 PF09078 CheY binding BJD09_06395 PF01627 Hpt domain BJD09_06400 PF00672 HAMP domain BJD09_06400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_06400 PF02203 Tar ligand binding domain homologue BJD09_06410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_06410 PF17200 Single Cache domain 2 BJD09_06410 PF00672 HAMP domain BJD09_06415 PF02203 Tar ligand binding domain homologue BJD09_06415 PF00672 HAMP domain BJD09_06415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_06430 PF02203 Tar ligand binding domain homologue BJD09_06430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_06430 PF00672 HAMP domain BJD09_06435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_06435 PF02203 Tar ligand binding domain homologue BJD09_06435 PF00672 HAMP domain BJD09_06440 PF02203 Tar ligand binding domain homologue BJD09_06440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_06440 PF00672 HAMP domain BJD09_06445 PF02203 Tar ligand binding domain homologue BJD09_06445 PF00672 HAMP domain BJD09_06445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_06455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_06455 PF00672 HAMP domain BJD09_06455 PF02203 Tar ligand binding domain homologue BJD09_06460 PF02203 Tar ligand binding domain homologue BJD09_06460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_06460 PF00672 HAMP domain BJD09_06465 PF02203 Tar ligand binding domain homologue BJD09_06465 PF00672 HAMP domain BJD09_06465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_06470 PF02203 Tar ligand binding domain homologue BJD09_06470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_06470 PF00672 HAMP domain BJD09_06475 PF00672 HAMP domain BJD09_06475 PF02203 Tar ligand binding domain homologue BJD09_06475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_06485 PF07317 Flagellar regulator YcgR BJD09_06485 PF07238 PilZ domain BJD09_06500 PF00672 HAMP domain BJD09_06500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_06500 PF02203 Tar ligand binding domain homologue BJD09_06505 PF03705 CheR methyltransferase, all-alpha domain BJD09_06505 PF01739 CheR methyltransferase, SAM binding domain BJD09_06510 PF03975 CheD chemotactic sensory transduction BJD09_06515 PF00072 Response regulator receiver domain BJD09_06515 PF01339 CheB methylesterase BJD09_06520 PF03707 Bacterial signalling protein N terminal repeat BJD09_06520 PF00563 EAL domain BJD09_06520 PF00990 Diguanylate cyclase, GGDEF domain BJD09_06525 PF00561 alpha/beta hydrolase fold BJD09_06530 PF00330 Aconitase family (aconitate hydratase) BJD09_06530 PF11791 Aconitate B N-terminal domain BJD09_06530 PF06434 Aconitate hydratase 2 N-terminus BJD09_06545 PF00330 Aconitase family (aconitate hydratase) BJD09_06545 PF00694 Aconitase C-terminal domain BJD09_06555 PF13193 AMP-binding enzyme C-terminal domain BJD09_06555 PF00501 AMP-binding enzyme BJD09_06560 PF00378 Enoyl-CoA hydratase/isomerase BJD09_06565 PF00512 His Kinase A (phospho-acceptor) domain BJD09_06565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_06565 PF00072 Response regulator receiver domain BJD09_06565 PF01627 Hpt domain BJD09_06570 PF00072 Response regulator receiver domain BJD09_06575 PF01336 OB-fold nucleic acid binding domain BJD09_06575 PF00152 tRNA synthetases class II (D, K and N) BJD09_06580 PF00472 RF-1 domain BJD09_06580 PF03462 PCRF domain BJD09_06585 PF04397 LytTr DNA-binding domain BJD09_06585 PF00072 Response regulator receiver domain BJD09_06625 PF02272 DHHA1 domain BJD09_06625 PF01368 DHH family BJD09_06625 PF17768 RecJ OB domain BJD09_06635 PF01272 Transcription elongation factor, GreA/GreB, C-term BJD09_06635 PF03449 Transcription elongation factor, N-terminal BJD09_06640 PF02142 MGS-like domain BJD09_06640 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BJD09_06640 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BJD09_06650 PF00117 Glutamine amidotransferase class-I BJD09_06650 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BJD09_06655 PF05173 Dihydrodipicolinate reductase, C-terminus BJD09_06655 PF01113 Dihydrodipicolinate reductase, N-terminus BJD09_06660 PF03473 MOSC domain BJD09_06660 PF03475 3-alpha domain BJD09_06665 PF00155 Aminotransferase class I and II BJD09_06680 PF07670 Nucleoside recognition BJD09_06680 PF07664 Ferrous iron transport protein B C terminus BJD09_06680 PF02421 Ferrous iron transport protein B BJD09_06690 PF00378 Enoyl-CoA hydratase/isomerase BJD09_06700 PF00682 HMGL-like BJD09_06705 PF00106 short chain dehydrogenase BJD09_06710 PF09285 Elongation factor P, C-terminal BJD09_06710 PF08207 Elongation factor P (EF-P) KOW-like domain BJD09_06710 PF01132 Elongation factor P (EF-P) OB domain BJD09_06730 PF02913 FAD linked oxidases, C-terminal domain BJD09_06730 PF01565 FAD binding domain BJD09_06735 PF01842 ACT domain BJD09_06735 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BJD09_06735 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BJD09_06745 PF13520 Amino acid permease BJD09_06750 PF13520 Amino acid permease BJD09_06755 PF00596 Class II Aldolase and Adducin N-terminal domain BJD09_06760 PF03079 ARD/ARD' family BJD09_06780 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BJD09_06780 PF01502 Phosphoribosyl-AMP cyclohydrolase BJD09_06785 PF00977 Histidine biosynthesis protein BJD09_06790 PF00977 Histidine biosynthesis protein BJD09_06795 PF00117 Glutamine amidotransferase class-I BJD09_06800 PF00475 Imidazoleglycerol-phosphate dehydratase BJD09_06805 PF00155 Aminotransferase class I and II BJD09_06810 PF00815 Histidinol dehydrogenase BJD09_06815 PF01634 ATP phosphoribosyltransferase BJD09_06815 PF08029 HisG, C-terminal domain BJD09_06825 PF13393 Histidyl-tRNA synthetase BJD09_06825 PF03129 Anticodon binding domain BJD09_06830 PF00027 Cyclic nucleotide-binding domain BJD09_06830 PF13545 Crp-like helix-turn-helix domain BJD09_06840 PF00291 Pyridoxal-phosphate dependent enzyme BJD09_06840 PF14821 Threonine synthase N terminus BJD09_06850 PF00288 GHMP kinases N terminal domain BJD09_06850 PF08544 GHMP kinases C terminal BJD09_06855 PF01842 ACT domain BJD09_06855 PF00696 Amino acid kinase family BJD09_06855 PF03447 Homoserine dehydrogenase, NAD binding domain BJD09_06855 PF00742 Homoserine dehydrogenase BJD09_06855 PF13840 ACT domain BJD09_06870 PF13332 Hemagglutinin repeat BJD09_06870 PF05860 haemagglutination activity domain BJD09_06870 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain BJD09_06870 PF05594 Haemagluttinin repeat BJD09_06870 PF13018 Extended Signal Peptide of Type V secretion system BJD09_06880 PF13332 Hemagglutinin repeat BJD09_06880 PF04829 Pre-toxin domain with VENN motif BJD09_06880 PF05594 Haemagluttinin repeat BJD09_06890 PF05594 Haemagluttinin repeat BJD09_06890 PF13332 Hemagglutinin repeat BJD09_06890 PF04829 Pre-toxin domain with VENN motif BJD09_06895 PF08479 POTRA domain, ShlB-type BJD09_06895 PF17287 POTRA domain BJD09_06895 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BJD09_06905 PF01522 Polysaccharide deacetylase BJD09_06905 PF14883 Hypothetical glycosyl hydrolase family 13 BJD09_06910 PF00535 Glycosyl transferase family 2 BJD09_06925 PF00171 Aldehyde dehydrogenase family BJD09_06945 PF01180 Dihydroorotate dehydrogenase BJD09_06950 PF01565 FAD binding domain BJD09_06950 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BJD09_06955 PF00892 EamA-like transporter family BJD09_06960 PF01177 Asp/Glu/Hydantoin racemase BJD09_06965 PF07690 Major Facilitator Superfamily BJD09_06975 PF01569 PAP2 superfamily BJD09_06980 PF04551 GcpE protein BJD09_06995 PF00072 Response regulator receiver domain BJD09_07000 PF02013 Cellulose or protein binding domain BJD09_07000 PF00150 Cellulase (glycosyl hydrolase family 5) BJD09_07010 PF01590 GAF domain BJD09_07010 PF00360 Phytochrome region BJD09_07010 PF00990 Diguanylate cyclase, GGDEF domain BJD09_07010 PF00563 EAL domain BJD09_07015 PF00474 Sodium:solute symporter family BJD09_07025 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD09_07025 PF14310 Fibronectin type III-like domain BJD09_07025 PF01915 Glycosyl hydrolase family 3 C-terminal domain BJD09_07050 PF00342 Phosphoglucose isomerase BJD09_07055 PF02261 Aspartate decarboxylase BJD09_07060 PF02569 Pantoate-beta-alanine ligase BJD09_07065 PF02548 Ketopantoate hydroxymethyltransferase BJD09_07070 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BJD09_07075 PF12627 Probable RNA and SrmB- binding site of polymerase A BJD09_07075 PF01743 Poly A polymerase head domain BJD09_07075 PF12626 Polymerase A arginine-rich C-terminus BJD09_07085 PF02649 Type I GTP cyclohydrolase folE2 BJD09_07090 PF01520 N-acetylmuramoyl-L-alanine amidase BJD09_07110 PF00083 Sugar (and other) transporter BJD09_07120 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BJD09_07120 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BJD09_07130 PF16338 Domain of unknown function (DUF4968) BJD09_07130 PF01055 Glycosyl hydrolases family 31 BJD09_07130 PF17137 Domain of unknown function (DUF5110) BJD09_07160 PF03466 LysR substrate binding domain BJD09_07160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_07170 PF01081 KDPG and KHG aldolase BJD09_07175 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BJD09_07175 PF13378 Enolase C-terminal domain-like BJD09_07180 PF08450 SMP-30/Gluconolactonase/LRE-like region BJD09_07185 PF05035 2-keto-3-deoxy-galactonokinase BJD09_07190 PF11953 Domain of unknown function (DUF3470) BJD09_07190 PF00037 4Fe-4S binding domain BJD09_07200 PF00701 Dihydrodipicolinate synthetase family BJD09_07215 PF00578 AhpC/TSA family BJD09_07220 PF02562 PhoH-like protein BJD09_07220 PF13638 PIN domain BJD09_07235 PF08543 Phosphomethylpyrimidine kinase BJD09_07235 PF02581 Thiamine monophosphate synthase BJD09_07260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_07260 PF03466 LysR substrate binding domain BJD09_07265 PF17954 Quercetinase C-terminal cupin domain BJD09_07265 PF02678 Pirin BJD09_07270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_07270 PF13426 PAS domain BJD09_07270 PF08447 PAS fold BJD09_07285 PF02599 Global regulator protein family BJD09_07290 PF01411 tRNA synthetases class II (A) BJD09_07290 PF02272 DHHA1 domain BJD09_07290 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BJD09_07295 PF02631 RecX family BJD09_07305 PF00154 recA bacterial DNA recombination protein BJD09_07310 PF01726 LexA DNA binding domain BJD09_07310 PF00717 Peptidase S24-like BJD09_07315 PF03109 ABC1 family BJD09_07320 PF02464 Competence-damaged protein BJD09_07325 PF16360 GTP-binding GTPase Middle Region BJD09_07325 PF13167 GTP-binding GTPase N-terminal BJD09_07325 PF01926 50S ribosome-binding GTPase BJD09_07330 PF17209 Hfq protein BJD09_07340 PF00809 Pterin binding enzyme BJD09_07345 PF01434 Peptidase family M41 BJD09_07345 PF06480 FtsH Extracellular BJD09_07345 PF17862 AAA+ lid domain BJD09_07345 PF00004 ATPase family associated with various cellular activities (AAA) BJD09_07350 PF01728 FtsJ-like methyltransferase BJD09_07355 PF01985 CRS1 / YhbY (CRM) domain BJD09_07360 PF04430 Protein of unknown function (DUF498/DUF598) BJD09_07365 PF01551 Peptidase family M23 BJD09_07365 PF01476 LysM domain BJD09_07370 PF09335 SNARE associated Golgi protein BJD09_07380 PF01975 Survival protein SurE BJD09_07385 PF01713 Smr domain BJD09_07390 PF01142 tRNA pseudouridine synthase D (TruD) BJD09_07395 PF02542 YgbB family BJD09_07400 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BJD09_07405 PF04977 Septum formation initiator BJD09_07410 PF00113 Enolase, C-terminal TIM barrel domain BJD09_07410 PF03952 Enolase, N-terminal domain BJD09_07420 PF00793 DAHP synthetase I family BJD09_07425 PF00117 Glutamine amidotransferase class-I BJD09_07425 PF06418 CTP synthase N-terminus BJD09_07435 PF00204 DNA gyrase B BJD09_07435 PF01751 Toprim domain BJD09_07435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_07435 PF00986 DNA gyrase B subunit, carboxyl terminus BJD09_07450 PF01384 Phosphate transporter family BJD09_07465 PF03471 Transporter associated domain BJD09_07465 PF01595 Cyclin M transmembrane N-terminal domain BJD09_07465 PF00571 CBS domain BJD09_07480 PF00296 Luciferase-like monooxygenase BJD09_07485 PF07690 Major Facilitator Superfamily BJD09_07490 PF00664 ABC transporter transmembrane region BJD09_07490 PF00005 ABC transporter BJD09_07495 PF00005 ABC transporter BJD09_07510 PF00534 Glycosyl transferases group 1 BJD09_07510 PF13579 Glycosyl transferase 4-like domain BJD09_07535 PF08241 Methyltransferase domain BJD09_07550 PF00535 Glycosyl transferase family 2 BJD09_07555 PF01943 Polysaccharide biosynthesis protein BJD09_07560 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BJD09_07580 PF05523 WxcM-like, C-terminal BJD09_07595 PF00034 Cytochrome c BJD09_07610 PF08281 Sigma-70, region 4 BJD09_07610 PF04542 Sigma-70 region 2 BJD09_07620 PF00082 Subtilase family BJD09_07625 PF01578 Cytochrome C assembly protein BJD09_07635 PF03100 CcmE BJD09_07640 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BJD09_07640 PF01578 Cytochrome C assembly protein BJD09_07645 PF08534 Redoxin BJD09_07650 PF03918 Cytochrome C biogenesis protein BJD09_07660 PF00072 Response regulator receiver domain BJD09_07660 PF13426 PAS domain BJD09_07660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_07665 PF06745 KaiC BJD09_07675 PF00486 Transcriptional regulatory protein, C terminal BJD09_07675 PF00072 Response regulator receiver domain BJD09_07680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_07680 PF13188 PAS domain BJD09_07680 PF08448 PAS fold BJD09_07680 PF00512 His Kinase A (phospho-acceptor) domain BJD09_07680 PF00072 Response regulator receiver domain BJD09_07700 PF00672 HAMP domain BJD09_07700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_07700 PF02203 Tar ligand binding domain homologue BJD09_07760 PF03466 LysR substrate binding domain BJD09_07760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_07765 PF02525 Flavodoxin-like fold BJD09_07770 PF02403 Seryl-tRNA synthetase N-terminal domain BJD09_07770 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BJD09_07775 PF03544 Gram-negative bacterial TonB protein C-terminal BJD09_07785 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BJD09_07790 PF00800 Prephenate dehydratase BJD09_07790 PF01817 Chorismate mutase type II BJD09_07790 PF01842 ACT domain BJD09_07795 PF00266 Aminotransferase class-V BJD09_07800 PF00174 Oxidoreductase molybdopterin binding domain BJD09_07805 PF01794 Ferric reductase like transmembrane component BJD09_07835 PF00392 Bacterial regulatory proteins, gntR family BJD09_07835 PF07702 UTRA domain BJD09_07850 PF07969 Amidohydrolase family BJD09_07855 PF00221 Aromatic amino acid lyase BJD09_07865 PF17391 Urocanase N-terminal domain BJD09_07865 PF17392 Urocanase C-terminal domain BJD09_07865 PF01175 Urocanase Rossmann-like domain BJD09_07880 PF13360 PQQ-like domain BJD09_07885 PF00521 DNA gyrase/topoisomerase IV, subunit A BJD09_07885 PF03989 DNA gyrase C-terminal domain, beta-propeller BJD09_07890 PF01008 Initiation factor 2 subunit family BJD09_07905 PF00152 tRNA synthetases class II (D, K and N) BJD09_07910 PF00533 BRCA1 C Terminus (BRCT) domain BJD09_07910 PF12826 Helix-hairpin-helix motif BJD09_07910 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BJD09_07910 PF03120 NAD-dependent DNA ligase OB-fold domain BJD09_07910 PF01653 NAD-dependent DNA ligase adenylation domain BJD09_07915 PF00155 Aminotransferase class I and II BJD09_07925 PF04354 ZipA, C-terminal FtsZ-binding domain BJD09_07930 PF02463 RecF/RecN/SMC N terminal domain BJD09_07935 PF01281 Ribosomal protein L9, N-terminal domain BJD09_07935 PF03948 Ribosomal protein L9, C-terminal domain BJD09_07940 PF01084 Ribosomal protein S18 BJD09_07945 PF01250 Ribosomal protein S6 BJD09_07950 PF01521 Iron-sulphur cluster biosynthesis BJD09_07960 PF00152 tRNA synthetases class II (D, K and N) BJD09_07960 PF01336 OB-fold nucleic acid binding domain BJD09_07980 PF04299 Putative FMN-binding domain BJD09_08000 PF00196 Bacterial regulatory proteins, luxR family BJD09_08000 PF00072 Response regulator receiver domain BJD09_08045 PF00484 Carbonic anhydrase BJD09_08050 PF06052 3-hydroxyanthranilic acid dioxygenase BJD09_08060 PF00266 Aminotransferase class-V BJD09_08065 PF01494 FAD binding domain BJD09_08075 PF00929 Exonuclease BJD09_08075 PF08411 Exonuclease C-terminal BJD09_08100 PF01513 ATP-NAD kinase BJD09_08105 PF01170 Putative RNA methylase family UPF0020 BJD09_08105 PF10672 S-adenosylmethionine-dependent methyltransferase BJD09_08105 PF02926 THUMP domain BJD09_08145 PF00581 Rhodanese-like domain BJD09_08150 PF00293 NUDIX domain BJD09_08155 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD09_08155 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BJD09_08160 PF00378 Enoyl-CoA hydratase/isomerase BJD09_08170 PF00730 HhH-GPD superfamily base excision DNA repair protein BJD09_08170 PF00633 Helix-hairpin-helix motif BJD09_08170 PF10576 Iron-sulfur binding domain of endonuclease III BJD09_08175 PF00916 Sulfate permease family BJD09_08175 PF01740 STAS domain BJD09_08180 PF00484 Carbonic anhydrase BJD09_08195 PF12849 PBP superfamily domain BJD09_08200 PF12849 PBP superfamily domain BJD09_08205 PF00528 Binding-protein-dependent transport system inner membrane component BJD09_08210 PF00528 Binding-protein-dependent transport system inner membrane component BJD09_08215 PF00005 ABC transporter BJD09_08220 PF01895 PhoU domain BJD09_08230 PF00929 Exonuclease BJD09_08235 PF07694 5TMR of 5TMR-LYT BJD09_08235 PF00990 Diguanylate cyclase, GGDEF domain BJD09_08240 PF00588 SpoU rRNA Methylase family BJD09_08240 PF08032 RNA 2'-O ribose methyltransferase substrate binding BJD09_08250 PF08461 Ribonuclease R winged-helix domain BJD09_08250 PF08206 Ribonuclease B OB domain BJD09_08250 PF00773 RNB domain BJD09_08250 PF00575 S1 RNA binding domain BJD09_08250 PF17876 Cold shock domain BJD09_08270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD09_08270 PF02770 Acyl-CoA dehydrogenase, middle domain BJD09_08270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD09_08275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD09_08275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD09_08275 PF02770 Acyl-CoA dehydrogenase, middle domain BJD09_08280 PF02770 Acyl-CoA dehydrogenase, middle domain BJD09_08280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD09_08280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD09_08285 PF02770 Acyl-CoA dehydrogenase, middle domain BJD09_08285 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD09_08285 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD09_08290 PF01209 ubiE/COQ5 methyltransferase family BJD09_08295 PF00809 Pterin binding enzyme BJD09_08295 PF02574 Homocysteine S-methyltransferase BJD09_08300 PF00809 Pterin binding enzyme BJD09_08300 PF02574 Homocysteine S-methyltransferase BJD09_08300 PF02965 Vitamin B12 dependent methionine synthase, activation domain BJD09_08300 PF02310 B12 binding domain BJD09_08300 PF02607 B12 binding domain BJD09_08310 PF00294 pfkB family carbohydrate kinase BJD09_08315 PF07690 Major Facilitator Superfamily BJD09_08320 PF00356 Bacterial regulatory proteins, lacI family BJD09_08335 PF04102 SlyX BJD09_08340 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BJD09_08340 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BJD09_08340 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BJD09_08345 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BJD09_08345 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD09_08350 PF00255 Glutathione peroxidase BJD09_08360 PF00392 Bacterial regulatory proteins, gntR family BJD09_08365 PF00005 ABC transporter BJD09_08390 PF00206 Lyase BJD09_08390 PF10415 Fumarase C C-terminus BJD09_08395 PF01595 Cyclin M transmembrane N-terminal domain BJD09_08395 PF00571 CBS domain BJD09_08395 PF03471 Transporter associated domain BJD09_08405 PF00206 Lyase BJD09_08405 PF08328 Adenylosuccinate lyase C-terminal BJD09_08415 PF08007 Cupin superfamily protein BJD09_08425 PF00676 Dehydrogenase E1 component BJD09_08425 PF16078 2-oxoglutarate dehydrogenase N-terminus BJD09_08425 PF02779 Transketolase, pyrimidine binding domain BJD09_08425 PF16870 2-oxoglutarate dehydrogenase C-terminal BJD09_08430 PF02817 e3 binding domain BJD09_08430 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BJD09_08430 PF00364 Biotin-requiring enzyme BJD09_08435 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD09_08435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BJD09_08440 PF03641 Possible lysine decarboxylase BJD09_08445 PF01205 Uncharacterized protein family UPF0029 BJD09_08450 PF00005 ABC transporter BJD09_08450 PF00664 ABC transporter transmembrane region BJD09_08455 PF03466 LysR substrate binding domain BJD09_08455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_08460 PF00005 ABC transporter BJD09_08460 PF00664 ABC transporter transmembrane region BJD09_08460 PF03412 Peptidase C39 family BJD09_08485 PF08543 Phosphomethylpyrimidine kinase BJD09_08495 PF00226 DnaJ domain BJD09_08495 PF00684 DnaJ central domain BJD09_08495 PF01556 DnaJ C terminal domain BJD09_08500 PF00012 Hsp70 protein BJD09_08505 PF01025 GrpE BJD09_08510 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding BJD09_08510 PF01628 HrcA protein C terminal domain BJD09_08515 PF02463 RecF/RecN/SMC N terminal domain BJD09_08520 PF01475 Ferric uptake regulator family BJD09_08525 PF04355 SmpA / OmlA family BJD09_08530 PF03658 RnfH family Ubiquitin BJD09_08535 PF03364 Polyketide cyclase / dehydrase and lipid transport BJD09_08540 PF01668 SmpB protein BJD09_08545 PF00082 Subtilase family BJD09_08665 PF00990 Diguanylate cyclase, GGDEF domain BJD09_08675 PF08448 PAS fold BJD09_08675 PF00990 Diguanylate cyclase, GGDEF domain BJD09_08680 PF02321 Outer membrane efflux protein BJD09_08685 PF00106 short chain dehydrogenase BJD09_08690 PF00873 AcrB/AcrD/AcrF family BJD09_08695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD09_08695 PF00529 HlyD membrane-fusion protein of T1SS BJD09_08710 PF03466 LysR substrate binding domain BJD09_08710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_08725 PF05736 OprF membrane domain BJD09_08725 PF00691 OmpA family BJD09_08735 PF00875 DNA photolyase BJD09_08735 PF03441 FAD binding domain of DNA photolyase BJD09_08740 PF03796 DnaB-like helicase C terminal domain BJD09_08740 PF00772 DnaB-like helicase N terminal domain BJD09_08745 PF03358 NADPH-dependent FMN reductase BJD09_08750 PF00733 Asparagine synthase BJD09_08750 PF13537 Glutamine amidotransferase domain BJD09_08760 PF02798 Glutathione S-transferase, N-terminal domain BJD09_08760 PF00043 Glutathione S-transferase, C-terminal domain BJD09_08770 PF02770 Acyl-CoA dehydrogenase, middle domain BJD09_08770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD09_08770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD09_08790 PF00899 ThiF family BJD09_08805 PF00313 'Cold-shock' DNA-binding domain BJD09_08815 PF02253 Phospholipase A1 BJD09_08820 PF00484 Carbonic anhydrase BJD09_08830 PF05681 Fumarate hydratase (Fumerase) BJD09_08830 PF05683 Fumarase C-terminus BJD09_08835 PF00005 ABC transporter BJD09_08840 PF00175 Oxidoreductase NAD-binding domain BJD09_08840 PF00970 Oxidoreductase FAD-binding domain BJD09_08845 PF00255 Glutathione peroxidase BJD09_08855 PF01432 Peptidase family M3 BJD09_08860 PF12802 MarR family BJD09_08885 PF00854 POT family BJD09_08895 PF14310 Fibronectin type III-like domain BJD09_08895 PF01915 Glycosyl hydrolase family 3 C-terminal domain BJD09_08895 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD09_08905 PF07690 Major Facilitator Superfamily BJD09_08910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD09_08910 PF00529 HlyD membrane-fusion protein of T1SS BJD09_08915 PF02321 Outer membrane efflux protein BJD09_08930 PF00521 DNA gyrase/topoisomerase IV, subunit A BJD09_08930 PF03989 DNA gyrase C-terminal domain, beta-propeller BJD09_08940 PF05724 Thiopurine S-methyltransferase (TPMT) BJD09_08945 PF00210 Ferritin-like domain BJD09_08950 PF01804 Penicillin amidase BJD09_08960 PF07715 TonB-dependent Receptor Plug Domain BJD09_08960 PF00593 TonB dependent receptor BJD09_08970 PF00733 Asparagine synthase BJD09_08970 PF13537 Glutamine amidotransferase domain BJD09_08975 PF07687 Peptidase dimerisation domain BJD09_08975 PF01546 Peptidase family M20/M25/M40 BJD09_08980 PF03960 ArsC family BJD09_08985 PF14602 Hexapeptide repeat of succinyl-transferase BJD09_08985 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BJD09_08985 PF00132 Bacterial transferase hexapeptide (six repeats) BJD09_08990 PF08335 GlnD PII-uridylyltransferase BJD09_08990 PF01966 HD domain BJD09_08990 PF01909 Nucleotidyltransferase domain BJD09_08995 PF00557 Metallopeptidase family M24 BJD09_09030 PF00318 Ribosomal protein S2 BJD09_09035 PF00889 Elongation factor TS BJD09_09040 PF00072 Response regulator receiver domain BJD09_09040 PF00990 Diguanylate cyclase, GGDEF domain BJD09_09045 PF00696 Amino acid kinase family BJD09_09050 PF01765 Ribosome recycling factor BJD09_09055 PF01255 Putative undecaprenyl diphosphate synthase BJD09_09065 PF13288 DXP reductoisomerase C-terminal domain BJD09_09065 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BJD09_09065 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BJD09_09070 PF17820 PDZ domain BJD09_09070 PF02163 Peptidase family M50 BJD09_09075 PF01103 Surface antigen BJD09_09075 PF07244 Surface antigen variable number repeat BJD09_09085 PF00132 Bacterial transferase hexapeptide (six repeats) BJD09_09085 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BJD09_09090 PF07977 FabA-like domain BJD09_09095 PF00132 Bacterial transferase hexapeptide (six repeats) BJD09_09095 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BJD09_09100 PF02684 Lipid-A-disaccharide synthetase BJD09_09105 PF01351 Ribonuclease HII BJD09_09110 PF01336 OB-fold nucleic acid binding domain BJD09_09110 PF14579 Helix-hairpin-helix motif BJD09_09110 PF02811 PHP domain BJD09_09110 PF07733 Bacterial DNA polymerase III alpha NTPase domain BJD09_09110 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BJD09_09115 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BJD09_09150 PF03551 Transcriptional regulator PadR-like family BJD09_09170 PF02592 Putative vitamin uptake transporter BJD09_09180 PF02574 Homocysteine S-methyltransferase BJD09_09185 PF00324 Amino acid permease BJD09_09190 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BJD09_09195 PF13732 Domain of unknown function (DUF4162) BJD09_09195 PF00005 ABC transporter BJD09_09210 PF01588 Putative tRNA binding domain BJD09_09210 PF09334 tRNA synthetases class I (M) BJD09_09220 PF04060 Putative Fe-S cluster BJD09_09240 PF04542 Sigma-70 region 2 BJD09_09240 PF04545 Sigma-70, region 4 BJD09_09285 PF01042 Endoribonuclease L-PSP BJD09_09330 PF07690 Major Facilitator Superfamily BJD09_09335 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BJD09_09345 PF03831 PhnA domain BJD09_09345 PF08274 PhnA Zinc-Ribbon BJD09_09355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD09_09375 PF01258 Prokaryotic dksA/traR C4-type zinc finger BJD09_09385 PF07043 Protein of unknown function (DUF1328) BJD09_09390 PF01863 Protein of unknown function DUF45 BJD09_09405 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BJD09_09405 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BJD09_09410 PF00082 Subtilase family BJD09_09410 PF12951 Passenger-associated-transport-repeat BJD09_09410 PF03797 Autotransporter beta-domain BJD09_09415 PF00108 Thiolase, N-terminal domain BJD09_09415 PF02803 Thiolase, C-terminal domain BJD09_09435 PF00990 Diguanylate cyclase, GGDEF domain BJD09_09435 PF00072 Response regulator receiver domain BJD09_09450 PF04679 ATP dependent DNA ligase C terminal region BJD09_09450 PF01068 ATP dependent DNA ligase domain BJD09_09450 PF04675 DNA ligase N terminus BJD09_09460 PF04675 DNA ligase N terminus BJD09_09460 PF01068 ATP dependent DNA ligase domain BJD09_09460 PF04679 ATP dependent DNA ligase C terminal region BJD09_09465 PF00271 Helicase conserved C-terminal domain BJD09_09465 PF08494 DEAD/H associated BJD09_09465 PF00270 DEAD/DEAH box helicase BJD09_09475 PF01494 FAD binding domain BJD09_09480 PF00313 'Cold-shock' DNA-binding domain BJD09_09485 PF01048 Phosphorylase superfamily BJD09_09495 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD09_09500 PF04244 Deoxyribodipyrimidine photo-lyase-related protein BJD09_09505 PF01593 Flavin containing amine oxidoreductase BJD09_09510 PF01323 DSBA-like thioredoxin domain BJD09_09520 PF05958 tRNA (Uracil-5-)-methyltransferase BJD09_09530 PF11967 Recombination protein O N terminal BJD09_09530 PF02565 Recombination protein O C terminal BJD09_09535 PF07650 KH domain BJD09_09535 PF01926 50S ribosome-binding GTPase BJD09_09540 PF00035 Double-stranded RNA binding motif BJD09_09540 PF14622 Ribonuclease-III-like BJD09_09550 PF10502 Signal peptidase, peptidase S26 BJD09_09555 PF03144 Elongation factor Tu domain 2 BJD09_09555 PF06421 GTP-binding protein LepA C-terminus BJD09_09555 PF00009 Elongation factor Tu GTP binding domain BJD09_09555 PF00679 Elongation factor G C-terminus BJD09_09560 PF13180 PDZ domain BJD09_09570 PF04542 Sigma-70 region 2 BJD09_09570 PF08281 Sigma-70, region 4 BJD09_09575 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BJD09_09575 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BJD09_09575 PF00378 Enoyl-CoA hydratase/isomerase BJD09_09580 PF01545 Cation efflux family BJD09_09585 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BJD09_09585 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BJD09_09590 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BJD09_09590 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BJD09_09590 PF00378 Enoyl-CoA hydratase/isomerase BJD09_09595 PF00378 Enoyl-CoA hydratase/isomerase BJD09_09600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD09_09600 PF02770 Acyl-CoA dehydrogenase, middle domain BJD09_09600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD09_09605 PF00171 Aldehyde dehydrogenase family BJD09_09610 PF09856 Predicted transcriptional regulator (DUF2083) BJD09_09610 PF06114 IrrE N-terminal-like domain BJD09_09610 PF01381 Helix-turn-helix BJD09_09620 PF07745 Glycosyl hydrolase family 53 BJD09_09625 PF02837 Glycosyl hydrolases family 2, sugar binding domain BJD09_09625 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BJD09_09625 PF00703 Glycosyl hydrolases family 2 BJD09_09625 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 BJD09_09625 PF16355 Domain of unknown function (DUF4982) BJD09_09650 PF03527 RHS protein BJD09_09650 PF05593 RHS Repeat BJD09_09670 PF00488 MutS domain V BJD09_09670 PF05190 MutS family domain IV BJD09_09670 PF05192 MutS domain III BJD09_09670 PF05188 MutS domain II BJD09_09670 PF01624 MutS domain I BJD09_09680 PF00141 Peroxidase BJD09_09685 PF01479 S4 domain BJD09_09700 PF01554 MatE BJD09_09705 PF01554 MatE BJD09_09710 PF01245 Ribosomal protein L19 BJD09_09715 PF01746 tRNA (Guanine-1)-methyltransferase BJD09_09720 PF01782 RimM N-terminal domain BJD09_09720 PF05239 PRC-barrel domain BJD09_09725 PF00886 Ribosomal protein S16 BJD09_09730 PF01063 Amino-transferase class IV BJD09_09735 PF03060 Nitronate monooxygenase BJD09_09740 PF00448 SRP54-type protein, GTPase domain BJD09_09740 PF02881 SRP54-type protein, helical bundle domain BJD09_09740 PF02978 Signal peptide binding domain BJD09_09745 PF01578 Cytochrome C assembly protein BJD09_09750 PF01263 Aldose 1-epimerase BJD09_09755 PF06964 Alpha-L-arabinofuranosidase C-terminal domain BJD09_09760 PF00722 Glycosyl hydrolases family 16 BJD09_09765 PF00072 Response regulator receiver domain BJD09_09770 PF00072 Response regulator receiver domain BJD09_09770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_09770 PF13426 PAS domain BJD09_09775 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BJD09_09775 PF00072 Response regulator receiver domain BJD09_09775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_09775 PF00672 HAMP domain BJD09_09775 PF00512 His Kinase A (phospho-acceptor) domain BJD09_09775 PF01627 Hpt domain BJD09_09780 PF03705 CheR methyltransferase, all-alpha domain BJD09_09780 PF01739 CheR methyltransferase, SAM binding domain BJD09_09785 PF01339 CheB methylesterase BJD09_09790 PF02702 Osmosensitive K+ channel His kinase sensor domain BJD09_09790 PF13493 Domain of unknown function (DUF4118) BJD09_09790 PF00512 His Kinase A (phospho-acceptor) domain BJD09_09790 PF13492 GAF domain BJD09_09790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_09795 PF07237 Protein of unknown function (DUF1428) BJD09_09800 PF00085 Thioredoxin BJD09_09805 PF00593 TonB dependent receptor BJD09_09805 PF07715 TonB-dependent Receptor Plug Domain BJD09_09810 PF04616 Glycosyl hydrolases family 43 BJD09_09810 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BJD09_09815 PF13188 PAS domain BJD09_09815 PF00072 Response regulator receiver domain BJD09_09815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_09815 PF00512 His Kinase A (phospho-acceptor) domain BJD09_09815 PF08448 PAS fold BJD09_09820 PF00512 His Kinase A (phospho-acceptor) domain BJD09_09820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_09820 PF17149 Periplasmic sensor domain found in signal transduction proteins BJD09_09820 PF01627 Hpt domain BJD09_09820 PF00672 HAMP domain BJD09_09820 PF00072 Response regulator receiver domain BJD09_09830 PF13581 Histidine kinase-like ATPase domain BJD09_09835 PF01740 STAS domain BJD09_09840 PF08678 Rsbr N terminal BJD09_09840 PF01740 STAS domain BJD09_09855 PF00183 Hsp90 protein BJD09_09855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_09860 PF12833 Helix-turn-helix domain BJD09_09870 PF05656 Protein of unknown function (DUF805) BJD09_09875 PF18073 Rubredoxin metal binding domain BJD09_09885 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BJD09_09890 PF00510 Cytochrome c oxidase subunit III BJD09_09895 PF00115 Cytochrome C and Quinol oxidase polypeptide I BJD09_09910 PF02401 LytB protein BJD09_09915 PF01252 Signal peptidase (SPase) II BJD09_09920 PF06827 Zinc finger found in FPG and IleRS BJD09_09920 PF08264 Anticodon-binding domain of tRNA BJD09_09920 PF00133 tRNA synthetases class I (I, L, M and V) BJD09_09925 PF06574 FAD synthetase BJD09_09925 PF01687 Riboflavin kinase BJD09_09930 PF03023 Lipid II flippase MurJ BJD09_09935 PF01649 Ribosomal protein S20 BJD09_09940 PF01018 GTP1/OBG BJD09_09940 PF01926 50S ribosome-binding GTPase BJD09_09945 PF01016 Ribosomal L27 protein BJD09_09950 PF00829 Ribosomal prokaryotic L21 protein BJD09_09955 PF00005 ABC transporter BJD09_09955 PF17755 UvrA DNA-binding domain BJD09_09955 PF17760 UvrA interaction domain BJD09_09970 PF00378 Enoyl-CoA hydratase/isomerase BJD09_09995 PF04377 Arginine-tRNA-protein transferase, C terminus BJD09_09995 PF04376 Arginine-tRNA-protein transferase, N terminus BJD09_10005 PF02222 ATP-grasp domain BJD09_10035 PF00730 HhH-GPD superfamily base excision DNA repair protein BJD09_10050 PF00072 Response regulator receiver domain BJD09_10050 PF00196 Bacterial regulatory proteins, luxR family BJD09_10055 PF07730 Histidine kinase BJD09_10070 PF05209 Septum formation inhibitor MinC, N-terminal domain BJD09_10070 PF03775 Septum formation inhibitor MinC, C-terminal domain BJD09_10075 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BJD09_10080 PF03776 Septum formation topological specificity factor MinE BJD09_10090 PF00512 His Kinase A (phospho-acceptor) domain BJD09_10090 PF08521 Two-component sensor kinase N-terminal BJD09_10090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_10095 PF00072 Response regulator receiver domain BJD09_10095 PF00486 Transcriptional regulatory protein, C terminal BJD09_10110 PF08019 Phosphoethanolamine transferase EptA/EptB BJD09_10110 PF00884 Sulfatase BJD09_10125 PF07690 Major Facilitator Superfamily BJD09_10130 PF02347 Glycine cleavage system P-protein BJD09_10135 PF00135 Carboxylesterase family BJD09_10140 PF00248 Aldo/keto reductase family BJD09_10145 PF18011 C-terminal domain found in long catalases BJD09_10145 PF06628 Catalase-related immune-responsive BJD09_10145 PF00199 Catalase BJD09_10160 PF02311 AraC-like ligand binding domain BJD09_10160 PF12833 Helix-turn-helix domain BJD09_10180 PF00326 Prolyl oligopeptidase family BJD09_10180 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BJD09_10180 PF07676 WD40-like Beta Propeller Repeat BJD09_10195 PF03169 OPT oligopeptide transporter protein BJD09_10205 PF00326 Prolyl oligopeptidase family BJD09_10215 PF02811 PHP domain BJD09_10215 PF07733 Bacterial DNA polymerase III alpha NTPase domain BJD09_10215 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BJD09_10215 PF14579 Helix-hairpin-helix motif BJD09_10230 PF01726 LexA DNA binding domain BJD09_10230 PF00717 Peptidase S24-like BJD09_10265 PF10518 TAT (twin-arginine translocation) pathway signal sequence BJD09_10265 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD09_10265 PF01799 [2Fe-2S] binding domain BJD09_10270 PF03450 CO dehydrogenase flavoprotein C-terminal domain BJD09_10270 PF00941 FAD binding domain in molybdopterin dehydrogenase BJD09_10275 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BJD09_10275 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BJD09_10280 PF17755 UvrA DNA-binding domain BJD09_10300 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD09_10320 PF17678 Glycosyl hydrolase family 92 N-terminal domain BJD09_10320 PF07971 Glycosyl hydrolase family 92 BJD09_10335 PF00723 Glycosyl hydrolases family 15 BJD09_10345 PF01256 Carbohydrate kinase BJD09_10350 PF13456 Reverse transcriptase-like BJD09_10350 PF00300 Histidine phosphatase superfamily (branch 1) BJD09_10380 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BJD09_10380 PF18766 SWI2/SNF2 ATPase BJD09_10380 PF11867 Domain of unknown function (DUF3387) BJD09_10425 PF00440 Bacterial regulatory proteins, tetR family BJD09_10435 PF01433 Peptidase family M1 domain BJD09_10435 PF11838 ERAP1-like C-terminal domain BJD09_10440 PF00709 Adenylosuccinate synthetase BJD09_10455 PF01145 SPFH domain / Band 7 family BJD09_10460 PF12221 Bacterial membrane protein N terminal BJD09_10460 PF01145 SPFH domain / Band 7 family BJD09_10465 PF00072 Response regulator receiver domain BJD09_10470 PF01556 DnaJ C terminal domain BJD09_10470 PF00226 DnaJ domain BJD09_10480 PF08534 Redoxin BJD09_10490 PF06832 Penicillin-Binding Protein C-terminus Family BJD09_10490 PF00912 Transglycosylase BJD09_10490 PF00905 Penicillin binding protein transpeptidase domain BJD09_10510 PF00207 Alpha-2-macroglobulin family BJD09_10510 PF01835 MG2 domain BJD09_10510 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain BJD09_10510 PF17962 Bacterial macroglobulin domain 6 BJD09_10510 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain BJD09_10510 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain BJD09_10510 PF07703 Alpha-2-macroglobulin bait region domain BJD09_10510 PF11974 Bacterial alpha-2-macroglobulin MG3 domain BJD09_10525 PF07715 TonB-dependent Receptor Plug Domain BJD09_10525 PF00593 TonB dependent receptor BJD09_10530 PF04303 PrpF protein BJD09_10540 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH BJD09_10545 PF00694 Aconitase C-terminal domain BJD09_10545 PF00330 Aconitase family (aconitate hydratase) BJD09_10550 PF00285 Citrate synthase, C-terminal domain BJD09_10560 PF02954 Bacterial regulatory protein, Fis family BJD09_10560 PF00158 Sigma-54 interaction domain BJD09_10560 PF06506 Propionate catabolism activator BJD09_10580 PF09115 DNA polymerase III, delta subunit, C terminal BJD09_10585 PF02618 YceG-like family BJD09_10590 PF04715 Anthranilate synthase component I, N terminal region BJD09_10590 PF00425 chorismate binding enzyme BJD09_10595 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD09_10595 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD09_10600 PF00550 Phosphopantetheine attachment site BJD09_10610 PF00698 Acyl transferase domain BJD09_10620 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BJD09_10620 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BJD09_10625 PF01783 Ribosomal L32p protein family BJD09_10630 PF02620 Large ribosomal RNA subunit accumulation protein YceD BJD09_10635 PF02545 Maf-like protein BJD09_10660 PF07726 ATPase family associated with various cellular activities (AAA) BJD09_10660 PF17863 AAA lid domain BJD09_10670 PF11992 Domain of unknown function (DUF3488) BJD09_10670 PF13559 Domain of unknown function (DUF4129) BJD09_10670 PF01841 Transglutaminase-like superfamily BJD09_10680 PF01230 HIT domain BJD09_10685 PF13662 Toprim domain BJD09_10685 PF02132 RecR protein BJD09_10690 PF02575 YbaB/EbfC DNA-binding family BJD09_10695 PF12170 DNA polymerase III tau subunit V interacting with alpha BJD09_10695 PF12169 DNA polymerase III subunits gamma and tau domain III BJD09_10695 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BJD09_10745 PF02391 MoaE protein BJD09_10750 PF02597 ThiS family BJD09_10755 PF01967 MoaC family BJD09_10765 PF04055 Radical SAM superfamily BJD09_10765 PF06463 Molybdenum Cofactor Synthesis C BJD09_10770 PF00753 Metallo-beta-lactamase superfamily BJD09_10770 PF12706 Beta-lactamase superfamily domain BJD09_10780 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BJD09_10800 PF00929 Exonuclease BJD09_10805 PF00075 RNase H BJD09_10815 PF16123 Hydroxyacylglutathione hydrolase C-terminus BJD09_10815 PF00753 Metallo-beta-lactamase superfamily BJD09_10820 PF01476 LysM domain BJD09_10820 PF05257 CHAP domain BJD09_10840 PF00216 Bacterial DNA-binding protein BJD09_10845 PF02190 ATP-dependent protease La (LON) substrate-binding domain BJD09_10845 PF00004 ATPase family associated with various cellular activities (AAA) BJD09_10845 PF05362 Lon protease (S16) C-terminal proteolytic domain BJD09_10850 PF07724 AAA domain (Cdc48 subfamily) BJD09_10850 PF10431 C-terminal, D2-small domain, of ClpB protein BJD09_10850 PF06689 ClpX C4-type zinc finger BJD09_10855 PF00574 Clp protease BJD09_10860 PF05697 Bacterial trigger factor protein (TF) BJD09_10860 PF05698 Bacterial trigger factor protein (TF) C-terminus BJD09_11020 PF00180 Isocitrate/isopropylmalate dehydrogenase BJD09_11030 PF00462 Glutaredoxin BJD09_11035 PF13181 Tetratricopeptide repeat BJD09_11035 PF01435 Peptidase family M48 BJD09_11040 PF00072 Response regulator receiver domain BJD09_11040 PF00486 Transcriptional regulatory protein, C terminal BJD09_11045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_11045 PF00512 His Kinase A (phospho-acceptor) domain BJD09_11045 PF11808 Phosphate regulon sensor protein PhoR BJD09_11045 PF00989 PAS fold BJD09_11050 PF02503 Polyphosphate kinase middle domain BJD09_11050 PF13090 Polyphosphate kinase C-terminal domain 2 BJD09_11050 PF17941 Polyphosphate kinase C-terminal domain 1 BJD09_11050 PF13089 Polyphosphate kinase N-terminal domain BJD09_11055 PF02541 Ppx/GppA phosphatase family BJD09_11060 PF13439 Glycosyltransferase Family 4 BJD09_11060 PF00534 Glycosyl transferases group 1 BJD09_11065 PF01569 PAP2 superfamily BJD09_11070 PF00149 Calcineurin-like phosphoesterase BJD09_11090 PF04305 Protein of unknown function (DUF455) BJD09_11095 PF00156 Phosphoribosyl transferase domain BJD09_11110 PF08245 Mur ligase middle domain BJD09_11110 PF02875 Mur ligase family, glutamate ligase domain BJD09_11115 PF00300 Histidine phosphatase superfamily (branch 1) BJD09_11120 PF10459 Peptidase S46 BJD09_11125 PF10459 Peptidase S46 BJD09_11130 PF04185 Phosphoesterase family BJD09_11130 PF05506 Domain of unknown function (DUF756) BJD09_11145 PF08240 Alcohol dehydrogenase GroES-like domain BJD09_11145 PF00107 Zinc-binding dehydrogenase BJD09_11155 PF00005 ABC transporter BJD09_11155 PF17850 CysA C-terminal regulatory domain BJD09_11155 PF12857 TOBE-like domain BJD09_11160 PF00528 Binding-protein-dependent transport system inner membrane component BJD09_11165 PF00528 Binding-protein-dependent transport system inner membrane component BJD09_11175 PF00155 Aminotransferase class I and II BJD09_11185 PF00849 RNA pseudouridylate synthase BJD09_11195 PF00691 OmpA family BJD09_11195 PF05736 OprF membrane domain BJD09_11205 PF00107 Zinc-binding dehydrogenase BJD09_11205 PF08240 Alcohol dehydrogenase GroES-like domain BJD09_11210 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BJD09_11210 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD09_11225 PF02798 Glutathione S-transferase, N-terminal domain BJD09_11225 PF00043 Glutathione S-transferase, C-terminal domain BJD09_11230 PF00056 lactate/malate dehydrogenase, NAD binding domain BJD09_11230 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BJD09_11235 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BJD09_11250 PF01425 Amidase BJD09_11260 PF01474 Class-II DAHP synthetase family BJD09_11280 PF02600 Disulfide bond formation protein DsbB BJD09_11285 PF01196 Ribosomal protein L17 BJD09_11290 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BJD09_11290 PF01000 RNA polymerase Rpb3/RpoA insert domain BJD09_11290 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BJD09_11295 PF01479 S4 domain BJD09_11295 PF00163 Ribosomal protein S4/S9 N-terminal domain BJD09_11300 PF00411 Ribosomal protein S11 BJD09_11305 PF00416 Ribosomal protein S13/S18 BJD09_11310 PF00344 SecY translocase BJD09_11315 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BJD09_11320 PF00327 Ribosomal protein L30p/L7e BJD09_11325 PF03719 Ribosomal protein S5, C-terminal domain BJD09_11325 PF00333 Ribosomal protein S5, N-terminal domain BJD09_11330 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BJD09_11335 PF00347 Ribosomal protein L6 BJD09_11340 PF00410 Ribosomal protein S8 BJD09_11345 PF00253 Ribosomal protein S14p/S29e BJD09_11350 PF00673 ribosomal L5P family C-terminus BJD09_11350 PF00281 Ribosomal protein L5 BJD09_11355 PF00467 KOW motif BJD09_11355 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BJD09_11360 PF00238 Ribosomal protein L14p/L23e BJD09_11365 PF00366 Ribosomal protein S17 BJD09_11370 PF00831 Ribosomal L29 protein BJD09_11375 PF00252 Ribosomal protein L16p/L10e BJD09_11380 PF07650 KH domain BJD09_11380 PF00189 Ribosomal protein S3, C-terminal domain BJD09_11385 PF00237 Ribosomal protein L22p/L17e BJD09_11390 PF00203 Ribosomal protein S19 BJD09_11395 PF00181 Ribosomal Proteins L2, RNA binding domain BJD09_11395 PF03947 Ribosomal Proteins L2, C-terminal domain BJD09_11400 PF00276 Ribosomal protein L23 BJD09_11405 PF00573 Ribosomal protein L4/L1 family BJD09_11410 PF00297 Ribosomal protein L3 BJD09_11415 PF00338 Ribosomal protein S10p/S20e BJD09_11420 PF00009 Elongation factor Tu GTP binding domain BJD09_11420 PF03144 Elongation factor Tu domain 2 BJD09_11420 PF03143 Elongation factor Tu C-terminal domain BJD09_11425 PF00009 Elongation factor Tu GTP binding domain BJD09_11425 PF14492 Elongation Factor G, domain II BJD09_11425 PF03764 Elongation factor G, domain IV BJD09_11425 PF03144 Elongation factor Tu domain 2 BJD09_11425 PF00679 Elongation factor G C-terminus BJD09_11430 PF00177 Ribosomal protein S7p/S5e BJD09_11435 PF00164 Ribosomal protein S12/S23 BJD09_11440 PF04998 RNA polymerase Rpb1, domain 5 BJD09_11440 PF04997 RNA polymerase Rpb1, domain 1 BJD09_11440 PF00623 RNA polymerase Rpb1, domain 2 BJD09_11440 PF05000 RNA polymerase Rpb1, domain 4 BJD09_11440 PF04983 RNA polymerase Rpb1, domain 3 BJD09_11445 PF04560 RNA polymerase Rpb2, domain 7 BJD09_11445 PF10385 RNA polymerase beta subunit external 1 domain BJD09_11445 PF04565 RNA polymerase Rpb2, domain 3 BJD09_11445 PF04561 RNA polymerase Rpb2, domain 2 BJD09_11445 PF04563 RNA polymerase beta subunit BJD09_11445 PF00562 RNA polymerase Rpb2, domain 6 BJD09_11450 PF00542 Ribosomal protein L7/L12 C-terminal domain BJD09_11450 PF16320 Ribosomal protein L7/L12 dimerisation domain BJD09_11455 PF00466 Ribosomal protein L10 BJD09_11460 PF00687 Ribosomal protein L1p/L10e family BJD09_11465 PF00298 Ribosomal protein L11, RNA binding domain BJD09_11465 PF03946 Ribosomal protein L11, N-terminal domain BJD09_11470 PF00467 KOW motif BJD09_11470 PF02357 Transcription termination factor nusG BJD09_11475 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BJD09_11485 PF03143 Elongation factor Tu C-terminal domain BJD09_11485 PF00009 Elongation factor Tu GTP binding domain BJD09_11485 PF03144 Elongation factor Tu domain 2 BJD09_11505 PF06071 Protein of unknown function (DUF933) BJD09_11505 PF01926 50S ribosome-binding GTPase BJD09_11510 PF01195 Peptidyl-tRNA hydrolase BJD09_11515 PF01386 Ribosomal L25p family BJD09_11515 PF14693 Ribosomal protein TL5, C-terminal domain BJD09_11520 PF14572 Phosphoribosyl synthetase-associated domain BJD09_11520 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BJD09_11530 PF00288 GHMP kinases N terminal domain BJD09_11530 PF08544 GHMP kinases C terminal BJD09_11535 PF03550 Outer membrane lipoprotein LolB BJD09_11550 PF03462 PCRF domain BJD09_11550 PF00472 RF-1 domain BJD09_11560 PF00994 Probable molybdopterin binding domain BJD09_11565 PF03976 Polyphosphate kinase 2 (PPK2) BJD09_11580 PF08534 Redoxin BJD09_11585 PF03631 Virulence factor BrkB BJD09_11590 PF03358 NADPH-dependent FMN reductase BJD09_11610 PF04073 Aminoacyl-tRNA editing domain BJD09_11615 PF04151 Bacterial pre-peptidase C-terminal domain BJD09_11615 PF00082 Subtilase family BJD09_11620 PF04151 Bacterial pre-peptidase C-terminal domain BJD09_11620 PF00082 Subtilase family BJD09_11625 PF04151 Bacterial pre-peptidase C-terminal domain BJD09_11625 PF00082 Subtilase family BJD09_11630 PF01063 Amino-transferase class IV BJD09_11645 PF02233 NAD(P) transhydrogenase beta subunit BJD09_11650 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BJD09_11700 PF01612 3'-5' exonuclease BJD09_11700 PF00476 DNA polymerase family A BJD09_11700 PF01367 5'-3' exonuclease, C-terminal SAM fold BJD09_11700 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BJD09_11705 PF00293 NUDIX domain BJD09_11715 PF00561 alpha/beta hydrolase fold BJD09_11720 PF17827 PrmC N-terminal domain BJD09_11720 PF05175 Methyltransferase small domain BJD09_11725 PF00578 AhpC/TSA family BJD09_11725 PF10417 C-terminal domain of 1-Cys peroxiredoxin BJD09_11730 PF13192 Thioredoxin domain BJD09_11730 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD09_11735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_11735 PF03466 LysR substrate binding domain BJD09_11745 PF01272 Transcription elongation factor, GreA/GreB, C-term BJD09_11745 PF14760 Rnk N-terminus BJD09_11750 PF00923 Transaldolase/Fructose-6-phosphate aldolase BJD09_11760 PF01625 Peptide methionine sulfoxide reductase BJD09_11770 PF00196 Bacterial regulatory proteins, luxR family BJD09_11770 PF00072 Response regulator receiver domain BJD09_11775 PF00512 His Kinase A (phospho-acceptor) domain BJD09_11775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_11775 PF01627 Hpt domain BJD09_11775 PF00672 HAMP domain BJD09_11775 PF00072 Response regulator receiver domain BJD09_11775 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BJD09_11780 PF00990 Diguanylate cyclase, GGDEF domain BJD09_11780 PF00072 Response regulator receiver domain BJD09_11795 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BJD09_11795 PF00749 tRNA synthetases class I (E and Q), catalytic domain BJD09_11805 PF00892 EamA-like transporter family BJD09_11830 PF18125 RlmM ferredoxin-like domain BJD09_11830 PF01728 FtsJ-like methyltransferase BJD09_11840 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BJD09_11840 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BJD09_11845 PF08450 SMP-30/Gluconolactonase/LRE-like region BJD09_11865 PF00378 Enoyl-CoA hydratase/isomerase BJD09_11870 PF00171 Aldehyde dehydrogenase family BJD09_11875 PF13193 AMP-binding enzyme C-terminal domain BJD09_11875 PF00501 AMP-binding enzyme BJD09_11880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_11880 PF03466 LysR substrate binding domain BJD09_11885 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BJD09_11885 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit BJD09_11890 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BJD09_11895 PF07729 FCD domain BJD09_11895 PF00392 Bacterial regulatory proteins, gntR family BJD09_11915 PF01494 FAD binding domain BJD09_11920 PF01494 FAD binding domain BJD09_11935 PF01923 Cobalamin adenosyltransferase BJD09_11940 PF00850 Histone deacetylase domain BJD09_11955 PF03968 OstA-like protein BJD09_11955 PF04453 LPS transport system D BJD09_11960 PF09312 SurA N-terminal domain BJD09_11960 PF00639 PPIC-type PPIASE domain BJD09_11965 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BJD09_11970 PF00398 Ribosomal RNA adenine dimethylase BJD09_11975 PF04379 ApaG domain BJD09_11980 PF00149 Calcineurin-like phosphoesterase BJD09_11985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BJD09_11985 PF00005 ABC transporter BJD09_11995 PF00528 Binding-protein-dependent transport system inner membrane component BJD09_12000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BJD09_12005 PF00296 Luciferase-like monooxygenase BJD09_12025 PF03358 NADPH-dependent FMN reductase BJD09_12030 PF00296 Luciferase-like monooxygenase BJD09_12040 PF00528 Binding-protein-dependent transport system inner membrane component BJD09_12045 PF00005 ABC transporter BJD09_12050 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BJD09_12050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD09_12055 PF00158 Sigma-54 interaction domain BJD09_12060 PF00186 Dihydrofolate reductase BJD09_12070 PF00303 Thymidylate synthase BJD09_12075 PF01790 Prolipoprotein diacylglyceryl transferase BJD09_12095 PF01219 Prokaryotic diacylglycerol kinase BJD09_12105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_12105 PF08521 Two-component sensor kinase N-terminal BJD09_12105 PF00512 His Kinase A (phospho-acceptor) domain BJD09_12110 PF00486 Transcriptional regulatory protein, C terminal BJD09_12110 PF00072 Response regulator receiver domain BJD09_12115 PF13472 GDSL-like Lipase/Acylhydrolase family BJD09_12120 PF00005 ABC transporter BJD09_12130 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BJD09_12140 PF00005 ABC transporter BJD09_12145 PF00528 Binding-protein-dependent transport system inner membrane component BJD09_12165 PF00593 TonB dependent receptor BJD09_12165 PF07715 TonB-dependent Receptor Plug Domain BJD09_12175 PF00248 Aldo/keto reductase family BJD09_12185 PF01773 Na+ dependent nucleoside transporter N-terminus BJD09_12185 PF07662 Na+ dependent nucleoside transporter C-terminus BJD09_12185 PF07670 Nucleoside recognition BJD09_12190 PF00294 pfkB family carbohydrate kinase BJD09_12200 PF01207 Dihydrouridine synthase (Dus) BJD09_12205 PF13649 Methyltransferase domain BJD09_12215 PF00438 S-adenosylmethionine synthetase, N-terminal domain BJD09_12215 PF02772 S-adenosylmethionine synthetase, central domain BJD09_12215 PF02773 S-adenosylmethionine synthetase, C-terminal domain BJD09_12225 PF00328 Histidine phosphatase superfamily (branch 2) BJD09_12260 PF00311 Phosphoenolpyruvate carboxylase BJD09_12275 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BJD09_12275 PF05221 S-adenosyl-L-homocysteine hydrolase BJD09_12280 PF13649 Methyltransferase domain BJD09_12315 PF00128 Alpha amylase, catalytic domain BJD09_12320 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BJD09_12340 PF00082 Subtilase family BJD09_12340 PF09286 Pro-kumamolisin, activation domain BJD09_12345 PF08659 KR domain BJD09_12345 PF14765 Polyketide synthase dehydratase BJD09_12345 PF00698 Acyl transferase domain BJD09_12345 PF00550 Phosphopantetheine attachment site BJD09_12345 PF00107 Zinc-binding dehydrogenase BJD09_12345 PF08240 Alcohol dehydrogenase GroES-like domain BJD09_12345 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD09_12345 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD09_12345 PF16197 Ketoacyl-synthetase C-terminal extension BJD09_12360 PF02219 Methylenetetrahydrofolate reductase BJD09_12370 PF00293 NUDIX domain BJD09_12375 PF07516 SecA Wing and Scaffold domain BJD09_12375 PF01043 SecA preprotein cross-linking domain BJD09_12375 PF07517 SecA DEAD-like domain BJD09_12375 PF02810 SEC-C motif BJD09_12380 PF01476 LysM domain BJD09_12380 PF08525 Opacity-associated protein A N-terminal motif BJD09_12380 PF01551 Peptidase family M23 BJD09_12390 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BJD09_12395 PF12327 FtsZ family, C-terminal domain BJD09_12395 PF00091 Tubulin/FtsZ family, GTPase domain BJD09_12400 PF02491 SHS2 domain inserted in FTSA BJD09_12405 PF08478 POTRA domain, FtsQ-type BJD09_12405 PF03799 Cell division protein FtsQ BJD09_12410 PF01820 D-ala D-ala ligase N-terminus BJD09_12410 PF07478 D-ala D-ala ligase C-terminus BJD09_12415 PF02875 Mur ligase family, glutamate ligase domain BJD09_12415 PF08245 Mur ligase middle domain BJD09_12415 PF01225 Mur ligase family, catalytic domain BJD09_12420 PF03033 Glycosyltransferase family 28 N-terminal domain BJD09_12420 PF04101 Glycosyltransferase family 28 C-terminal domain BJD09_12425 PF01098 Cell cycle protein BJD09_12430 PF00953 Glycosyl transferase family 4 BJD09_12435 PF01225 Mur ligase family, catalytic domain BJD09_12435 PF02875 Mur ligase family, glutamate ligase domain BJD09_12435 PF08245 Mur ligase middle domain BJD09_12440 PF01225 Mur ligase family, catalytic domain BJD09_12440 PF02875 Mur ligase family, glutamate ligase domain BJD09_12440 PF08245 Mur ligase middle domain BJD09_12445 PF03717 Penicillin-binding Protein dimerisation domain BJD09_12445 PF00905 Penicillin binding protein transpeptidase domain BJD09_12450 PF04999 Cell division protein FtsL BJD09_12455 PF01795 MraW methylase family BJD09_12460 PF02381 MraZ protein, putative antitoxin-like BJD09_12480 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BJD09_12490 PF02021 Uncharacterised protein family UPF0102 BJD09_12495 PF04307 LexA-binding, inner membrane-associated putative hydrolase BJD09_12500 PF01565 FAD binding domain BJD09_12500 PF02913 FAD linked oxidases, C-terminal domain BJD09_12515 PF00072 Response regulator receiver domain BJD09_12515 PF00486 Transcriptional regulatory protein, C terminal BJD09_12520 PF02702 Osmosensitive K+ channel His kinase sensor domain BJD09_12520 PF13493 Domain of unknown function (DUF4118) BJD09_12520 PF13492 GAF domain BJD09_12520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_12520 PF00512 His Kinase A (phospho-acceptor) domain BJD09_12525 PF02669 K+-transporting ATPase, c chain BJD09_12535 PF03814 Potassium-transporting ATPase A subunit BJD09_12560 PF02769 AIR synthase related protein, C-terminal domain BJD09_12560 PF00586 AIR synthase related protein, N-terminal domain BJD09_12565 PF01029 NusB family BJD09_12570 PF00885 6,7-dimethyl-8-ribityllumazine synthase BJD09_12575 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BJD09_12575 PF00925 GTP cyclohydrolase II BJD09_12580 PF00677 Lumazine binding domain BJD09_12590 PF01872 RibD C-terminal domain BJD09_12590 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BJD09_12600 PF03477 ATP cone domain BJD09_12605 PF00464 Serine hydroxymethyltransferase BJD09_12615 PF00005 ABC transporter BJD09_12615 PF12848 ABC transporter BJD09_12625 PF00892 EamA-like transporter family BJD09_12630 PF02567 Phenazine biosynthesis-like protein BJD09_12635 PF00155 Aminotransferase class I and II BJD09_12635 PF00392 Bacterial regulatory proteins, gntR family BJD09_12645 PF00756 Putative esterase BJD09_12650 PF04828 Glutathione-dependent formaldehyde-activating enzyme BJD09_12655 PF08240 Alcohol dehydrogenase GroES-like domain BJD09_12655 PF00107 Zinc-binding dehydrogenase BJD09_12660 PF02583 Metal-sensitive transcriptional repressor BJD09_12675 PF00486 Transcriptional regulatory protein, C terminal BJD09_12675 PF00072 Response regulator receiver domain BJD09_12680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_12680 PF00512 His Kinase A (phospho-acceptor) domain BJD09_12680 PF00672 HAMP domain BJD09_12685 PF04107 Glutamate-cysteine ligase family 2(GCS2) BJD09_12700 PF10996 Beta-Casp domain BJD09_12700 PF00753 Metallo-beta-lactamase superfamily BJD09_12700 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BJD09_12705 PF01926 50S ribosome-binding GTPase BJD09_12710 PF00034 Cytochrome c BJD09_12720 PF01323 DSBA-like thioredoxin domain BJD09_12735 PF02028 BCCT, betaine/carnitine/choline family transporter BJD09_12740 PF00171 Aldehyde dehydrogenase family BJD09_12745 PF05199 GMC oxidoreductase BJD09_12745 PF00732 GMC oxidoreductase BJD09_12750 PF01966 HD domain BJD09_12750 PF01743 Poly A polymerase head domain BJD09_12750 PF12627 Probable RNA and SrmB- binding site of polymerase A BJD09_12760 PF01979 Amidohydrolase family BJD09_12765 PF01380 SIS domain BJD09_12770 PF00356 Bacterial regulatory proteins, lacI family BJD09_12775 PF07690 Major Facilitator Superfamily BJD09_12820 PF03934 Type II secretion system (T2SS), protein K BJD09_12825 PF11612 Type II secretion system (T2SS), protein J BJD09_12825 PF07963 Prokaryotic N-terminal methylation motif BJD09_12830 PF02501 Type II secretion system (T2SS), protein I BJD09_12830 PF07963 Prokaryotic N-terminal methylation motif BJD09_12835 PF12019 Type II transport protein GspH BJD09_12835 PF07963 Prokaryotic N-terminal methylation motif BJD09_12840 PF08334 Type II secretion system (T2SS), protein G BJD09_12840 PF07963 Prokaryotic N-terminal methylation motif BJD09_12845 PF00482 Type II secretion system (T2SS), protein F BJD09_12850 PF00437 Type II/IV secretion system protein BJD09_12855 PF00263 Bacterial type II and III secretion system protein BJD09_12855 PF03958 Bacterial type II/III secretion system short domain BJD09_12905 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BJD09_12910 PF00512 His Kinase A (phospho-acceptor) domain BJD09_12910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_12915 PF00072 Response regulator receiver domain BJD09_12920 PF01590 GAF domain BJD09_12920 PF00360 Phytochrome region BJD09_12920 PF08446 PAS fold BJD09_12920 PF00512 His Kinase A (phospho-acceptor) domain BJD09_12920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_12925 PF04972 BON domain BJD09_12930 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BJD09_12930 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BJD09_12935 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BJD09_12935 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BJD09_12970 PF01467 Cytidylyltransferase-like BJD09_12970 PF00293 NUDIX domain BJD09_12980 PF03466 LysR substrate binding domain BJD09_12980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_12990 PF03572 Peptidase family S41 BJD09_12990 PF00595 PDZ domain BJD09_12990 PF11818 C-terminal domain of tail specific protease (DUF3340) BJD09_12990 PF17804 Tail specific protease N-terminal domain BJD09_12995 PF04055 Radical SAM superfamily BJD09_12995 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BJD09_13000 PF03099 Biotin/lipoate A/B protein ligase family BJD09_13005 PF04359 Protein of unknown function (DUF493) BJD09_13015 PF00768 D-alanyl-D-alanine carboxypeptidase BJD09_13015 PF07943 Penicillin-binding protein 5, C-terminal domain BJD09_13025 PF03330 Lytic transglycolase BJD09_13025 PF05036 Sporulation related domain BJD09_13030 PF13406 Transglycosylase SLT domain BJD09_13035 PF00295 Glycosyl hydrolases family 28 BJD09_13040 PF01098 Cell cycle protein BJD09_13045 PF00905 Penicillin binding protein transpeptidase domain BJD09_13045 PF03717 Penicillin-binding Protein dimerisation domain BJD09_13055 PF04085 rod shape-determining protein MreC BJD09_13065 PF00294 pfkB family carbohydrate kinase BJD09_13070 PF01590 GAF domain BJD09_13070 PF02954 Bacterial regulatory protein, Fis family BJD09_13070 PF00158 Sigma-54 interaction domain BJD09_13080 PF00107 Zinc-binding dehydrogenase BJD09_13080 PF08240 Alcohol dehydrogenase GroES-like domain BJD09_13095 PF00497 Bacterial extracellular solute-binding proteins, family 3 BJD09_13100 PF13360 PQQ-like domain BJD09_13120 PF01433 Peptidase family M1 domain BJD09_13120 PF11838 ERAP1-like C-terminal domain BJD09_13125 PF00563 EAL domain BJD09_13125 PF00990 Diguanylate cyclase, GGDEF domain BJD09_13125 PF03707 Bacterial signalling protein N terminal repeat BJD09_13130 PF01209 ubiE/COQ5 methyltransferase family BJD09_13140 PF13533 Biotin-lipoyl like BJD09_13145 PF13673 Acetyltransferase (GNAT) domain BJD09_13155 PF00004 ATPase family associated with various cellular activities (AAA) BJD09_13155 PF10431 C-terminal, D2-small domain, of ClpB protein BJD09_13155 PF07724 AAA domain (Cdc48 subfamily) BJD09_13160 PF00227 Proteasome subunit BJD09_13165 PF02899 Phage integrase, N-terminal SAM-like domain BJD09_13165 PF00589 Phage integrase family BJD09_13175 PF01678 Diaminopimelate epimerase BJD09_13185 PF04304 Protein of unknown function (DUF454) BJD09_13190 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BJD09_13190 PF00326 Prolyl oligopeptidase family BJD09_13200 PF00155 Aminotransferase class I and II BJD09_13210 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BJD09_13210 PF00326 Prolyl oligopeptidase family BJD09_13240 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BJD09_13240 PF03900 Porphobilinogen deaminase, C-terminal domain BJD09_13245 PF00072 Response regulator receiver domain BJD09_13245 PF04397 LytTr DNA-binding domain BJD09_13250 PF06580 Histidine kinase BJD09_13250 PF07694 5TMR of 5TMR-LYT BJD09_13260 PF13632 Glycosyl transferase family group 2 BJD09_13280 PF08448 PAS fold BJD09_13280 PF00990 Diguanylate cyclase, GGDEF domain BJD09_13290 PF01740 STAS domain BJD09_13290 PF00916 Sulfate permease family BJD09_13295 PF00150 Cellulase (glycosyl hydrolase family 5) BJD09_13295 PF00553 Cellulose binding domain BJD09_13300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_13300 PF00672 HAMP domain BJD09_13300 PF02203 Tar ligand binding domain homologue BJD09_13305 PF00990 Diguanylate cyclase, GGDEF domain BJD09_13305 PF03707 Bacterial signalling protein N terminal repeat BJD09_13305 PF00563 EAL domain BJD09_13335 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BJD09_13335 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BJD09_13350 PF01204 Trehalase BJD09_13360 PF01544 CorA-like Mg2+ transporter protein BJD09_13370 PF00324 Amino acid permease BJD09_13380 PF00497 Bacterial extracellular solute-binding proteins, family 3 BJD09_13385 PF00892 EamA-like transporter family BJD09_13410 PF00990 Diguanylate cyclase, GGDEF domain BJD09_13410 PF05230 MASE2 domain BJD09_13420 PF07759 Protein of unknown function (DUF1615) BJD09_13425 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BJD09_13425 PF00326 Prolyl oligopeptidase family BJD09_13435 PF03176 MMPL family BJD09_13435 PF12823 Domain of unknown function (DUF3817) BJD09_13460 PF13409 Glutathione S-transferase, N-terminal domain BJD09_13470 PF00106 short chain dehydrogenase BJD09_13485 PF00106 short chain dehydrogenase BJD09_13495 PF13276 HTH-like domain BJD09_13495 PF00665 Integrase core domain BJD09_13495 PF13333 Integrase core domain BJD09_13500 PF00145 C-5 cytosine-specific DNA methylase BJD09_13505 PF00456 Transketolase, thiamine diphosphate binding domain BJD09_13505 PF17831 Pyruvate dehydrogenase E1 component middle domain BJD09_13510 PF07745 Glycosyl hydrolase family 53 BJD09_13540 PF13419 Haloacid dehalogenase-like hydrolase BJD09_13545 PF07729 FCD domain BJD09_13545 PF00392 Bacterial regulatory proteins, gntR family BJD09_13555 PF00698 Acyl transferase domain BJD09_13560 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BJD09_13565 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG BJD09_13575 PF01039 Carboxyl transferase domain BJD09_13580 PF06857 Malonate decarboxylase delta subunit (MdcD) BJD09_13585 PF16957 Malonate decarboxylase, alpha subunit, transporter BJD09_13610 PF04264 YceI-like domain BJD09_13615 PF00881 Nitroreductase family BJD09_13635 PF02592 Putative vitamin uptake transporter BJD09_13640 PF03710 Glutamate-ammonia ligase adenylyltransferase BJD09_13640 PF08335 GlnD PII-uridylyltransferase BJD09_13650 PF08450 SMP-30/Gluconolactonase/LRE-like region BJD09_13665 PF00793 DAHP synthetase I family BJD09_13670 PF07715 TonB-dependent Receptor Plug Domain BJD09_13670 PF00593 TonB dependent receptor BJD09_13680 PF00118 TCP-1/cpn60 chaperonin family BJD09_13685 PF00166 Chaperonin 10 Kd subunit BJD09_13695 PF04231 Endonuclease I BJD09_13700 PF00106 short chain dehydrogenase BJD09_13715 PF01852 START domain BJD09_13730 PF03091 CutA1 divalent ion tolerance protein BJD09_13735 PF02683 Cytochrome C biogenesis protein transmembrane region BJD09_13735 PF11412 Disulphide bond corrector protein DsbC BJD09_13740 PF01220 Dehydroquinase class II BJD09_13745 PF00364 Biotin-requiring enzyme BJD09_13755 PF02785 Biotin carboxylase C-terminal domain BJD09_13755 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BJD09_13755 PF00289 Biotin carboxylase, N-terminal domain BJD09_13785 PF01381 Helix-turn-helix BJD09_13795 PF02954 Bacterial regulatory protein, Fis family BJD09_13825 PF00782 Dual specificity phosphatase, catalytic domain BJD09_13830 PF12146 Serine aminopeptidase, S33 BJD09_13830 PF12147 Putative methyltransferase BJD09_13835 PF01066 CDP-alcohol phosphatidyltransferase BJD09_13840 PF02142 MGS-like domain BJD09_13840 PF01808 AICARFT/IMPCHase bienzyme BJD09_13850 PF02844 Phosphoribosylglycinamide synthetase, N domain BJD09_13850 PF02843 Phosphoribosylglycinamide synthetase, C domain BJD09_13850 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BJD09_13865 PF07690 Major Facilitator Superfamily BJD09_13870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_13870 PF03466 LysR substrate binding domain BJD09_13875 PF07690 Major Facilitator Superfamily BJD09_13895 PF17113 Regulatory signalling modulator protein AmpE BJD09_13895 PF03186 CobD/Cbib protein BJD09_13900 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain BJD09_13900 PF09297 NADH pyrophosphatase zinc ribbon domain BJD09_13900 PF00293 NUDIX domain BJD09_13925 PF01521 Iron-sulphur cluster biosynthesis BJD09_13945 PF00072 Response regulator receiver domain BJD09_13945 PF00486 Transcriptional regulatory protein, C terminal BJD09_13950 PF00672 HAMP domain BJD09_13950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_13950 PF00512 His Kinase A (phospho-acceptor) domain BJD09_13950 PF01627 Hpt domain BJD09_13950 PF00072 Response regulator receiver domain BJD09_13950 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BJD09_13955 PF00210 Ferritin-like domain BJD09_13965 PF00293 NUDIX domain BJD09_13980 PF00380 Ribosomal protein S9/S16 BJD09_13985 PF00572 Ribosomal protein L13 BJD09_13990 PF03232 Ubiquinone biosynthesis protein COQ7 BJD09_13995 PF00893 Small Multidrug Resistance protein BJD09_14000 PF02675 S-adenosylmethionine decarboxylase BJD09_14005 PF00027 Cyclic nucleotide-binding domain BJD09_14005 PF00325 Bacterial regulatory proteins, crp family BJD09_14015 PF00218 Indole-3-glycerol phosphate synthase BJD09_14020 PF00591 Glycosyl transferase family, a/b domain BJD09_14020 PF02885 Glycosyl transferase family, helical bundle domain BJD09_14030 PF00117 Glutamine amidotransferase class-I BJD09_14040 PF00425 chorismate binding enzyme BJD09_14040 PF04715 Anthranilate synthase component I, N terminal region BJD09_14045 PF00781 Diacylglycerol kinase catalytic domain BJD09_14050 PF00583 Acetyltransferase (GNAT) family BJD09_14055 PF00834 Ribulose-phosphate 3 epimerase family BJD09_14065 PF00226 DnaJ domain BJD09_14065 PF05099 Tellurite resistance protein TerB BJD09_14070 PF01259 SAICAR synthetase BJD09_14090 PF00182 Chitinase class I BJD09_14115 PF13244 Domain of unknown function (DUF4040) BJD09_14115 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BJD09_14115 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BJD09_14115 PF00361 Proton-conducting membrane transporter BJD09_14120 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BJD09_14125 PF00361 Proton-conducting membrane transporter BJD09_14135 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BJD09_14140 PF03334 Na+/H+ antiporter subunit BJD09_14160 PF04209 homogentisate 1,2-dioxygenase BJD09_14170 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BJD09_14175 PF01047 MarR family BJD09_14190 PF03301 Tryptophan 2,3-dioxygenase BJD09_14200 PF00676 Dehydrogenase E1 component BJD09_14205 PF02779 Transketolase, pyrimidine binding domain BJD09_14205 PF02780 Transketolase, C-terminal domain BJD09_14215 PF02817 e3 binding domain BJD09_14215 PF00364 Biotin-requiring enzyme BJD09_14215 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BJD09_14220 PF00271 Helicase conserved C-terminal domain BJD09_14220 PF00270 DEAD/DEAH box helicase BJD09_14235 PF00873 AcrB/AcrD/AcrF family BJD09_14250 PF02321 Outer membrane efflux protein BJD09_14255 PF06903 VirK protein BJD09_14275 PF13460 NAD(P)H-binding BJD09_14280 PF00128 Alpha amylase, catalytic domain BJD09_14280 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BJD09_14290 PF00128 Alpha amylase, catalytic domain BJD09_14295 PF02446 4-alpha-glucanotransferase BJD09_14300 PF00128 Alpha amylase, catalytic domain BJD09_14300 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BJD09_14300 PF11941 Domain of unknown function (DUF3459) BJD09_14305 PF00128 Alpha amylase, catalytic domain BJD09_14305 PF02806 Alpha amylase, C-terminal all-beta domain BJD09_14305 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BJD09_14310 PF08323 Starch synthase catalytic domain BJD09_14310 PF00534 Glycosyl transferases group 1 BJD09_14315 PF00990 Diguanylate cyclase, GGDEF domain BJD09_14315 PF00072 Response regulator receiver domain BJD09_14320 PF05661 Protein of unknown function (DUF808) BJD09_14325 PF03109 ABC1 family BJD09_14335 PF00884 Sulfatase BJD09_14340 PF12795 Mechanosensitive ion channel porin domain BJD09_14340 PF00924 Mechanosensitive ion channel BJD09_14340 PF12794 Mechanosensitive ion channel inner membrane domain 1 BJD09_14370 PF01311 Bacterial export proteins, family 1 BJD09_14380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BJD09_14380 PF18269 T3SS EscN ATPase C-terminal domain BJD09_14380 PF02874 ATP synthase alpha/beta family, beta-barrel domain BJD09_14395 PF01514 Secretory protein of YscJ/FliF family BJD09_14410 PF01312 FlhB HrpN YscU SpaS Family BJD09_14415 PF00771 FHIPEP family BJD09_14430 PF00813 FliP family BJD09_14435 PF01313 Bacterial export proteins, family 3 BJD09_14470 PF05819 NolX protein BJD09_14495 PF01040 UbiA prenyltransferase family BJD09_14505 PF04055 Radical SAM superfamily BJD09_14505 PF06968 Biotin and Thiamin Synthesis associated domain BJD09_14510 PF00155 Aminotransferase class I and II BJD09_14520 PF12697 Alpha/beta hydrolase family BJD09_14530 PF13649 Methyltransferase domain BJD09_14550 PF00291 Pyridoxal-phosphate dependent enzyme BJD09_14560 PF13932 GidA associated domain BJD09_14560 PF01134 Glucose inhibited division protein A BJD09_14565 PF10677 Protein of unknown function (DUF2490) BJD09_14570 PF07859 alpha/beta hydrolase fold BJD09_14580 PF09339 IclR helix-turn-helix domain BJD09_14580 PF01614 Bacterial transcriptional regulator BJD09_14590 PF02627 Carboxymuconolactone decarboxylase family BJD09_14595 PF12146 Serine aminopeptidase, S33 BJD09_14600 PF10397 Adenylosuccinate lyase C-terminus BJD09_14600 PF00206 Lyase BJD09_14610 PF00775 Dioxygenase BJD09_14610 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal BJD09_14615 PF02803 Thiolase, C-terminal domain BJD09_14615 PF00108 Thiolase, N-terminal domain BJD09_14620 PF01144 Coenzyme A transferase BJD09_14625 PF01144 Coenzyme A transferase BJD09_14630 PF00355 Rieske [2Fe-2S] domain BJD09_14640 PF00455 DeoR C terminal sensor domain BJD09_14640 PF08220 DeoR-like helix-turn-helix domain BJD09_14645 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BJD09_14645 PF01266 FAD dependent oxidoreductase BJD09_14650 PF00230 Major intrinsic protein BJD09_14655 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BJD09_14655 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BJD09_14665 PF01494 FAD binding domain BJD09_14675 PF00171 Aldehyde dehydrogenase family BJD09_14695 PF01966 HD domain BJD09_14695 PF11871 Domain of unknown function (DUF3391) BJD09_14700 PF07690 Major Facilitator Superfamily BJD09_14710 PF00132 Bacterial transferase hexapeptide (six repeats) BJD09_14725 PF00920 Dehydratase family BJD09_14730 PF00589 Phage integrase family BJD09_14730 PF13495 Phage integrase, N-terminal SAM-like domain BJD09_14765 PF01638 HxlR-like helix-turn-helix BJD09_14770 PF05368 NmrA-like family BJD09_14785 PF03812 2-keto-3-deoxygluconate permease BJD09_14790 PF08267 Cobalamin-independent synthase, N-terminal domain BJD09_14790 PF01717 Cobalamin-independent synthase, Catalytic domain BJD09_14800 PF03358 NADPH-dependent FMN reductase BJD09_14805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_14805 PF03466 LysR substrate binding domain BJD09_14810 PF02677 Epoxyqueuosine reductase QueH BJD09_14815 PF02219 Methylenetetrahydrofolate reductase BJD09_14825 PF02321 Outer membrane efflux protein BJD09_14830 PF00873 AcrB/AcrD/AcrF family BJD09_14835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD09_14835 PF00529 HlyD membrane-fusion protein of T1SS BJD09_14840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_14840 PF00672 HAMP domain BJD09_14840 PF00512 His Kinase A (phospho-acceptor) domain BJD09_14845 PF00072 Response regulator receiver domain BJD09_14845 PF00486 Transcriptional regulatory protein, C terminal BJD09_14850 PF00551 Formyl transferase BJD09_14860 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BJD09_14860 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BJD09_14865 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BJD09_14870 PF02146 Sir2 family BJD09_14885 PF07690 Major Facilitator Superfamily BJD09_14890 PF03466 LysR substrate binding domain BJD09_14890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_14905 PF01026 TatD related DNase BJD09_14910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_14910 PF03466 LysR substrate binding domain BJD09_14915 PF00355 Rieske [2Fe-2S] domain BJD09_14920 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD09_14930 PF00860 Permease family BJD09_14945 PF01425 Amidase BJD09_14960 PF07690 Major Facilitator Superfamily BJD09_14965 PF03466 LysR substrate binding domain BJD09_14965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_14970 PF01546 Peptidase family M20/M25/M40 BJD09_14970 PF07687 Peptidase dimerisation domain BJD09_14975 PF00266 Aminotransferase class-V BJD09_14990 PF01014 Uricase BJD09_14990 PF09349 OHCU decarboxylase BJD09_14995 PF13454 FAD-NAD(P)-binding BJD09_15000 PF00576 HIUase/Transthyretin family BJD09_15005 PF07308 Protein of unknown function (DUF1456) BJD09_15015 PF00271 Helicase conserved C-terminal domain BJD09_15015 PF00270 DEAD/DEAH box helicase BJD09_15015 PF08482 ATP-dependent helicase C-terminal BJD09_15015 PF04408 Helicase associated domain (HA2) BJD09_15025 PF00593 TonB dependent receptor BJD09_15030 PF00849 RNA pseudouridylate synthase BJD09_15045 PF16884 N-terminal domain of oxidoreductase BJD09_15045 PF00107 Zinc-binding dehydrogenase BJD09_15075 PF02566 OsmC-like protein BJD09_15080 PF01047 MarR family BJD09_15085 PF03969 AFG1-like ATPase BJD09_15105 PF02492 CobW/HypB/UreG, nucleotide-binding domain BJD09_15105 PF07683 Cobalamin synthesis protein cobW C-terminal domain BJD09_15165 PF02770 Acyl-CoA dehydrogenase, middle domain BJD09_15165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD09_15165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD09_15170 PF01039 Carboxyl transferase domain BJD09_15175 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BJD09_15175 PF00364 Biotin-requiring enzyme BJD09_15175 PF00289 Biotin carboxylase, N-terminal domain BJD09_15175 PF02785 Biotin carboxylase C-terminal domain BJD09_15180 PF00326 Prolyl oligopeptidase family BJD09_15200 PF00990 Diguanylate cyclase, GGDEF domain BJD09_15205 PF00463 Isocitrate lyase family BJD09_15210 PF01274 Malate synthase BJD09_15215 PF03466 LysR substrate binding domain BJD09_15215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_15220 PF00999 Sodium/hydrogen exchanger family BJD09_15225 PF12833 Helix-turn-helix domain BJD09_15245 PF12706 Beta-lactamase superfamily domain BJD09_15250 PF01432 Peptidase family M3 BJD09_15255 PF01112 Asparaginase BJD09_15265 PF00472 RF-1 domain BJD09_15275 PF00849 RNA pseudouridylate synthase BJD09_15285 PF03109 ABC1 family BJD09_15300 PF07478 D-ala D-ala ligase C-terminus BJD09_15300 PF01820 D-ala D-ala ligase N-terminus BJD09_15315 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BJD09_15320 PF00501 AMP-binding enzyme BJD09_15325 PF03692 Putative zinc- or iron-chelating domain BJD09_15330 PF00561 alpha/beta hydrolase fold BJD09_15335 PF13784 Fic/DOC family N-terminal BJD09_15335 PF02661 Fic/DOC family BJD09_15340 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BJD09_15340 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BJD09_15355 PF00588 SpoU rRNA Methylase family BJD09_15360 PF07690 Major Facilitator Superfamily BJD09_15375 PF02954 Bacterial regulatory protein, Fis family BJD09_15375 PF00158 Sigma-54 interaction domain BJD09_15375 PF00072 Response regulator receiver domain BJD09_15380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_15385 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BJD09_15385 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BJD09_15385 PF00205 Thiamine pyrophosphate enzyme, central domain BJD09_15400 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BJD09_15400 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BJD09_15405 PF02556 Preprotein translocase subunit SecB BJD09_15410 PF00581 Rhodanese-like domain BJD09_15445 PF02803 Thiolase, C-terminal domain BJD09_15445 PF00108 Thiolase, N-terminal domain BJD09_15455 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BJD09_15465 PF00080 Copper/zinc superoxide dismutase (SODC) BJD09_15470 PF00080 Copper/zinc superoxide dismutase (SODC) BJD09_15475 PF00158 Sigma-54 interaction domain BJD09_15475 PF00072 Response regulator receiver domain BJD09_15475 PF02954 Bacterial regulatory protein, Fis family BJD09_15480 PF00512 His Kinase A (phospho-acceptor) domain BJD09_15480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_15480 PF00989 PAS fold BJD09_15485 PF00909 Ammonium Transporter Family BJD09_15490 PF00543 Nitrogen regulatory protein P-II BJD09_15495 PF03951 Glutamine synthetase, beta-Grasp domain BJD09_15495 PF00120 Glutamine synthetase, catalytic domain BJD09_15505 PF02673 Bacitracin resistance protein BacA BJD09_15515 PF00107 Zinc-binding dehydrogenase BJD09_15515 PF08240 Alcohol dehydrogenase GroES-like domain BJD09_15545 PF03061 Thioesterase superfamily BJD09_15550 PF13091 PLD-like domain BJD09_15565 PF01883 Iron-sulfur cluster assembly protein BJD09_15565 PF10609 NUBPL iron-transfer P-loop NTPase BJD09_15590 PF01381 Helix-turn-helix BJD09_15610 PF12867 DinB superfamily BJD09_15610 PF03781 Sulfatase-modifying factor enzyme 1 BJD09_15620 PF00528 Binding-protein-dependent transport system inner membrane component BJD09_15625 PF00005 ABC transporter BJD09_15640 PF00005 ABC transporter BJD09_15650 PF01734 Patatin-like phospholipase BJD09_15655 PF07715 TonB-dependent Receptor Plug Domain BJD09_15655 PF07660 Secretin and TonB N terminus short domain BJD09_15655 PF00593 TonB dependent receptor BJD09_15660 PF01037 Lrp/AsnC ligand binding domain BJD09_15665 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BJD09_15680 PF00657 GDSL-like Lipase/Acylhydrolase BJD09_15695 PF04962 KduI/IolB family BJD09_15705 PF00356 Bacterial regulatory proteins, lacI family BJD09_15710 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BJD09_15710 PF04616 Glycosyl hydrolases family 43 BJD09_15715 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BJD09_15725 PF03480 Bacterial extracellular solute-binding protein, family 7 BJD09_15735 PF07859 alpha/beta hydrolase fold BJD09_15735 PF13472 GDSL-like Lipase/Acylhydrolase family BJD09_15740 PF00135 Carboxylesterase family BJD09_15745 PF00248 Aldo/keto reductase family BJD09_15760 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BJD09_15760 PF02806 Alpha amylase, C-terminal all-beta domain BJD09_15760 PF00128 Alpha amylase, catalytic domain BJD09_15765 PF16657 Maltogenic Amylase, C-terminal domain BJD09_15765 PF00128 Alpha amylase, catalytic domain BJD09_15770 PF00128 Alpha amylase, catalytic domain BJD09_15770 PF11896 Domain of unknown function (DUF3416) BJD09_15850 PF00294 pfkB family carbohydrate kinase BJD09_15860 PF12241 Trans-2-enoyl-CoA reductase catalytic region BJD09_15860 PF07055 Enoyl reductase FAD binding domain BJD09_15860 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BJD09_15865 PF00486 Transcriptional regulatory protein, C terminal BJD09_15865 PF18500 CadC C-terminal domain 1 BJD09_15885 PF00072 Response regulator receiver domain BJD09_15885 PF00196 Bacterial regulatory proteins, luxR family BJD09_15890 PF07730 Histidine kinase BJD09_15895 PF00144 Beta-lactamase BJD09_15905 PF01070 FMN-dependent dehydrogenase BJD09_15910 PF02735 Ku70/Ku80 beta-barrel domain BJD09_15930 PF00171 Aldehyde dehydrogenase family BJD09_15935 PF07883 Cupin domain BJD09_15945 PF00593 TonB dependent receptor BJD09_15945 PF07715 TonB-dependent Receptor Plug Domain BJD09_15950 PF00155 Aminotransferase class I and II BJD09_15955 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BJD09_15985 PF07726 ATPase family associated with various cellular activities (AAA) BJD09_15985 PF17863 AAA lid domain BJD09_16025 PF00083 Sugar (and other) transporter BJD09_16025 PF08946 Osmosensory transporter coiled coil BJD09_16035 PF00085 Thioredoxin BJD09_16055 PF13344 Haloacid dehalogenase-like hydrolase BJD09_16055 PF00293 NUDIX domain BJD09_16065 PF16485 Protealysin propeptide BJD09_16065 PF01447 Thermolysin metallopeptidase, catalytic domain BJD09_16065 PF02868 Thermolysin metallopeptidase, alpha-helical domain BJD09_16085 PF05532 CsbD-like BJD09_16155 PF02525 Flavodoxin-like fold BJD09_16175 PF03466 LysR substrate binding domain BJD09_16175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_16185 PF00106 short chain dehydrogenase BJD09_16205 PF03006 Haemolysin-III related BJD09_16210 PF00270 DEAD/DEAH box helicase BJD09_16210 PF00271 Helicase conserved C-terminal domain BJD09_16210 PF09369 Domain of unknown function (DUF1998) BJD09_16300 PF00685 Sulfotransferase domain BJD09_16320 PF13537 Glutamine amidotransferase domain BJD09_16320 PF00733 Asparagine synthase BJD09_16335 PF00005 ABC transporter BJD09_16335 PF00664 ABC transporter transmembrane region BJD09_16350 PF16363 GDP-mannose 4,6 dehydratase BJD09_16365 PF13537 Glutamine amidotransferase domain BJD09_16365 PF00733 Asparagine synthase BJD09_16385 PF13439 Glycosyltransferase Family 4 BJD09_16385 PF00534 Glycosyl transferases group 1 BJD09_16390 PF03808 Glycosyl transferase WecB/TagA/CpsF family BJD09_16400 PF02350 UDP-N-acetylglucosamine 2-epimerase BJD09_16405 PF02397 Bacterial sugar transferase BJD09_16425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_16425 PF03466 LysR substrate binding domain BJD09_16455 PF01645 Conserved region in glutamate synthase BJD09_16455 PF00310 Glutamine amidotransferases class-II BJD09_16455 PF04898 Glutamate synthase central domain BJD09_16455 PF01493 GXGXG motif BJD09_16460 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BJD09_16460 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD09_16470 PF00107 Zinc-binding dehydrogenase BJD09_16470 PF08240 Alcohol dehydrogenase GroES-like domain BJD09_16485 PF00150 Cellulase (glycosyl hydrolase family 5) BJD09_16495 PF00150 Cellulase (glycosyl hydrolase family 5) BJD09_16505 PF04389 Peptidase family M28 BJD09_16515 PF01551 Peptidase family M23 BJD09_16520 PF03572 Peptidase family S41 BJD09_16520 PF13180 PDZ domain BJD09_16525 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BJD09_16525 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BJD09_16540 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BJD09_16550 PF04055 Radical SAM superfamily BJD09_16565 PF13396 Phospholipase_D-nuclease N-terminal BJD09_16565 PF13091 PLD-like domain BJD09_16575 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BJD09_16580 PF02472 Biopolymer transport protein ExbD/TolR BJD09_16585 PF02472 Biopolymer transport protein ExbD/TolR BJD09_16590 PF01618 MotA/TolQ/ExbB proton channel family BJD09_16595 PF03544 Gram-negative bacterial TonB protein C-terminal BJD09_16605 PF01435 Peptidase family M48 BJD09_16615 PF00204 DNA gyrase B BJD09_16615 PF00986 DNA gyrase B subunit, carboxyl terminus BJD09_16615 PF18053 DNA gyrase B subunit insert domain BJD09_16615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_16615 PF01751 Toprim domain BJD09_16620 PF02463 RecF/RecN/SMC N terminal domain BJD09_16625 PF00712 DNA polymerase III beta subunit, N-terminal domain BJD09_16625 PF02767 DNA polymerase III beta subunit, central domain BJD09_16625 PF02768 DNA polymerase III beta subunit, C-terminal domain BJD09_16630 PF11638 DnaA N-terminal domain BJD09_16630 PF00308 Bacterial dnaA protein BJD09_16630 PF08299 Bacterial dnaA protein helix-turn-helix BJD09_16640 PF00468 Ribosomal protein L34 BJD09_16645 PF00825 Ribonuclease P BJD09_16650 PF14849 YidC periplasmic domain BJD09_16650 PF02096 60Kd inner membrane protein BJD09_16655 PF01522 Polysaccharide deacetylase BJD09_16660 PF01926 50S ribosome-binding GTPase BJD09_16660 PF12631 MnmE helical domain BJD09_16660 PF10396 GTP-binding protein TrmE N-terminus BJD09_16665 PF01569 PAP2 superfamily BJD09_16675 PF03009 Glycerophosphoryl diester phosphodiesterase family BJD09_16680 PF01694 Rhomboid family BJD09_16690 PF03741 Integral membrane protein TerC family BJD09_16700 PF10672 S-adenosylmethionine-dependent methyltransferase BJD09_16700 PF17785 PUA-like domain BJD09_16715 PF07690 Major Facilitator Superfamily BJD09_16720 PF02595 Glycerate kinase family BJD09_16725 PF05651 Putative sugar diacid recognition BJD09_16725 PF17853 GGDEF-like domain BJD09_16725 PF13556 PucR C-terminal helix-turn-helix domain BJD09_16730 PF00990 Diguanylate cyclase, GGDEF domain BJD09_16735 PF10947 Protein of unknown function (DUF2628) BJD09_16745 PF17678 Glycosyl hydrolase family 92 N-terminal domain BJD09_16745 PF07971 Glycosyl hydrolase family 92 BJD09_16750 PF13520 Amino acid permease BJD09_16760 PF13417 Glutathione S-transferase, N-terminal domain BJD09_16760 PF00043 Glutathione S-transferase, C-terminal domain BJD09_16775 PF03466 LysR substrate binding domain BJD09_16775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_16780 PF08240 Alcohol dehydrogenase GroES-like domain BJD09_16780 PF00107 Zinc-binding dehydrogenase BJD09_16785 PF02646 RmuC family BJD09_16795 PF00255 Glutathione peroxidase BJD09_16805 PF04333 MlaA lipoprotein BJD09_16815 PF05494 MlaC protein BJD09_16820 PF02470 MlaD protein BJD09_16825 PF02405 Permease MlaE BJD09_16830 PF00005 ABC transporter BJD09_16845 PF17946 RecC C-terminal domain BJD09_16850 PF13361 UvrD-like helicase C-terminal domain BJD09_16850 PF00580 UvrD/REP helicase N-terminal domain BJD09_16850 PF12705 PD-(D/E)XK nuclease superfamily BJD09_16885 PF01425 Amidase BJD09_16890 PF02785 Biotin carboxylase C-terminal domain BJD09_16890 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BJD09_16890 PF00289 Biotin carboxylase, N-terminal domain BJD09_16940 PF00849 RNA pseudouridylate synthase BJD09_16965 PF01850 PIN domain BJD09_16990 PF13396 Phospholipase_D-nuclease N-terminal BJD09_16990 PF13091 PLD-like domain BJD09_16995 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family BJD09_17000 PF00083 Sugar (and other) transporter BJD09_17005 PF04632 Fusaric acid resistance protein family BJD09_17010 PF02321 Outer membrane efflux protein BJD09_17015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD09_17015 PF00529 HlyD membrane-fusion protein of T1SS BJD09_17020 PF07869 Protein of unknown function (DUF1656) BJD09_17030 PF01227 GTP cyclohydrolase I BJD09_17050 PF01925 Sulfite exporter TauE/SafE BJD09_17055 PF02810 SEC-C motif BJD09_17065 PF01263 Aldose 1-epimerase BJD09_17070 PF07690 Major Facilitator Superfamily BJD09_17075 PF01126 Heme oxygenase BJD09_17080 PF13426 PAS domain BJD09_17080 PF08446 PAS fold BJD09_17080 PF01590 GAF domain BJD09_17080 PF00360 Phytochrome region BJD09_17085 PF03594 Benzoate membrane transport protein BJD09_17120 PF06827 Zinc finger found in FPG and IleRS BJD09_17120 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BJD09_17120 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BJD09_17130 PF04349 Periplasmic glucan biosynthesis protein, MdoG BJD09_17135 PF00512 His Kinase A (phospho-acceptor) domain BJD09_17135 PF00360 Phytochrome region BJD09_17135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_17135 PF01590 GAF domain BJD09_17135 PF08446 PAS fold BJD09_17140 PF00265 Thymidine kinase BJD09_17145 PF00580 UvrD/REP helicase N-terminal domain BJD09_17145 PF13361 UvrD-like helicase C-terminal domain BJD09_17160 PF04337 Protein of unknown function, DUF480 BJD09_17170 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BJD09_17175 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BJD09_17180 PF04820 Tryptophan halogenase BJD09_17195 PF00356 Bacterial regulatory proteins, lacI family BJD09_17205 PF01553 Acyltransferase BJD09_17210 PF14765 Polyketide synthase dehydratase BJD09_17210 PF00550 Phosphopantetheine attachment site BJD09_17210 PF08659 KR domain BJD09_17210 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD09_17210 PF00698 Acyl transferase domain BJD09_17210 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD09_17210 PF08240 Alcohol dehydrogenase GroES-like domain BJD09_17210 PF00107 Zinc-binding dehydrogenase BJD09_17210 PF16197 Ketoacyl-synthetase C-terminal extension BJD09_17265 PF04616 Glycosyl hydrolases family 43 BJD09_17285 PF03422 Carbohydrate binding module (family 6) BJD09_17285 PF00553 Cellulose binding domain BJD09_17285 PF00331 Glycosyl hydrolase family 10 BJD09_17300 PF02614 Glucuronate isomerase BJD09_17305 PF00703 Glycosyl hydrolases family 2 BJD09_17305 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 BJD09_17305 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BJD09_17305 PF02837 Glycosyl hydrolases family 2, sugar binding domain BJD09_17305 PF16355 Domain of unknown function (DUF4982) BJD09_17310 PF00331 Glycosyl hydrolase family 10 BJD09_17315 PF08450 SMP-30/Gluconolactonase/LRE-like region BJD09_17335 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BJD09_17335 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BJD09_17360 PF00171 Aldehyde dehydrogenase family BJD09_17390 PF08125 Mannitol dehydrogenase C-terminal domain BJD09_17390 PF01232 Mannitol dehydrogenase Rossmann domain BJD09_17395 PF14310 Fibronectin type III-like domain BJD09_17395 PF07691 PA14 domain BJD09_17395 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD09_17395 PF01915 Glycosyl hydrolase family 3 C-terminal domain BJD09_17400 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BJD09_17400 PF04616 Glycosyl hydrolases family 43 BJD09_17405 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BJD09_17405 PF13378 Enolase C-terminal domain-like BJD09_17415 PF03648 Glycosyl hydrolase family 67 N-terminus BJD09_17415 PF07477 Glycosyl hydrolase family 67 C-terminus BJD09_17415 PF07488 Glycosyl hydrolase family 67 middle domain BJD09_17420 PF00356 Bacterial regulatory proteins, lacI family BJD09_17435 PF01171 PP-loop family BJD09_17440 PF04381 Putative exonuclease, RdgC BJD09_17460 PF12697 Alpha/beta hydrolase family BJD09_17465 PF00762 Ferrochelatase BJD09_17475 PF02416 mttA/Hcf106 family BJD09_17480 PF02416 mttA/Hcf106 family BJD09_17485 PF00902 Sec-independent protein translocase protein (TatC) BJD09_17495 PF00117 Glutamine amidotransferase class-I BJD09_17495 PF00958 GMP synthase C terminal domain BJD09_17510 PF00437 Type II/IV secretion system protein BJD09_17510 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BJD09_17515 PF02091 Glycyl-tRNA synthetase alpha subunit BJD09_17520 PF02092 Glycyl-tRNA synthetase beta subunit BJD09_17520 PF05746 DALR anticodon binding domain BJD09_17550 PF01103 Surface antigen BJD09_17550 PF17243 POTRA domain TamA domain 1 BJD09_17555 PF04357 TamB, inner membrane protein subunit of TAM complex BJD09_17575 PF01011 PQQ enzyme repeat BJD09_17575 PF13360 PQQ-like domain BJD09_17575 PF13570 PQQ-like domain BJD09_17595 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain BJD09_17595 PF06165 Glycosyltransferase family 36 BJD09_17610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_17610 PF00512 His Kinase A (phospho-acceptor) domain BJD09_17615 PF02659 Putative manganese efflux pump BJD09_17620 PF09339 IclR helix-turn-helix domain BJD09_17620 PF01614 Bacterial transcriptional regulator BJD09_17625 PF07690 Major Facilitator Superfamily BJD09_17630 PF05336 L-rhamnose mutarotase BJD09_17640 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BJD09_17640 PF13378 Enolase C-terminal domain-like BJD09_17650 PF01557 Fumarylacetoacetate (FAA) hydrolase family BJD09_17665 PF00248 Aldo/keto reductase family BJD09_17675 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BJD09_17675 PF04616 Glycosyl hydrolases family 43 BJD09_17700 PF00196 Bacterial regulatory proteins, luxR family BJD09_17700 PF00072 Response regulator receiver domain BJD09_17705 PF00501 AMP-binding enzyme BJD09_17705 PF13193 AMP-binding enzyme C-terminal domain BJD09_17705 PF16177 Acetyl-coenzyme A synthetase N-terminus BJD09_17715 PF04341 Protein of unknown function, DUF485 BJD09_17720 PF00474 Sodium:solute symporter family BJD09_17730 PF09312 SurA N-terminal domain BJD09_17740 PF00480 ROK family BJD09_17745 PF03372 Endonuclease/Exonuclease/phosphatase family BJD09_17755 PF04226 Transglycosylase associated protein BJD09_17760 PF01648 4'-phosphopantetheinyl transferase superfamily BJD09_17765 PF09423 PhoD-like phosphatase BJD09_17765 PF16655 PhoD-like phosphatase, N-terminal domain BJD09_17770 PF16655 PhoD-like phosphatase, N-terminal domain BJD09_17770 PF09423 PhoD-like phosphatase BJD09_17775 PF02527 rRNA small subunit methyltransferase G BJD09_17795 PF13533 Biotin-lipoyl like BJD09_17800 PF00873 AcrB/AcrD/AcrF family BJD09_17805 PF00830 Ribosomal L28 family BJD09_17810 PF00471 Ribosomal protein L33 BJD09_17815 PF04909 Amidohydrolase BJD09_17825 PF04303 PrpF protein BJD09_17830 PF03737 Aldolase/RraA BJD09_17835 PF03466 LysR substrate binding domain BJD09_17835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_17840 PF13091 PLD-like domain BJD09_17840 PF13396 Phospholipase_D-nuclease N-terminal BJD09_17855 PF13361 UvrD-like helicase C-terminal domain BJD09_17855 PF00580 UvrD/REP helicase N-terminal domain BJD09_17860 PF14602 Hexapeptide repeat of succinyl-transferase BJD09_17860 PF12464 Maltose acetyltransferase BJD09_17885 PF05638 Type VI secretion system effector, Hcp BJD09_17910 PF07724 AAA domain (Cdc48 subfamily) BJD09_17910 PF00004 ATPase family associated with various cellular activities (AAA) BJD09_17910 PF10431 C-terminal, D2-small domain, of ClpB protein BJD09_17910 PF17871 AAA lid domain BJD09_17945 PF00328 Histidine phosphatase superfamily (branch 2) BJD09_17965 PF04542 Sigma-70 region 2 BJD09_17965 PF08281 Sigma-70, region 4 BJD09_17975 PF00069 Protein kinase domain BJD09_17975 PF03793 PASTA domain BJD09_17990 PF04717 Type VI secretion system, phage-baseplate injector BJD09_18030 PF03793 PASTA domain BJD09_18030 PF00069 Protein kinase domain BJD09_18060 PF00476 DNA polymerase family A BJD09_18060 PF01612 3'-5' exonuclease BJD09_18060 PF01367 5'-3' exonuclease, C-terminal SAM fold BJD09_18060 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BJD09_18070 PF01218 Coproporphyrinogen III oxidase BJD09_18090 PF07676 WD40-like Beta Propeller Repeat BJD09_18090 PF00326 Prolyl oligopeptidase family BJD09_18115 PF04820 Tryptophan halogenase BJD09_18120 PF00550 Phosphopantetheine attachment site BJD09_18130 PF01553 Acyltransferase BJD09_18135 PF07977 FabA-like domain BJD09_18195 PF00535 Glycosyl transferase family 2 BJD09_18205 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD09_18205 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD09_18210 PF05166 YcgL domain BJD09_18225 PF00723 Glycosyl hydrolases family 15 BJD09_18230 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BJD09_18230 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BJD09_18235 PF00999 Sodium/hydrogen exchanger family BJD09_18235 PF02254 TrkA-N domain BJD09_18250 PF00571 CBS domain BJD09_18250 PF01769 Divalent cation transporter BJD09_18250 PF03448 MgtE intracellular N domain BJD09_18255 PF13380 CoA binding domain BJD09_18255 PF13607 Succinyl-CoA ligase like flavodoxin domain BJD09_18255 PF00583 Acetyltransferase (GNAT) family BJD09_18270 PF00317 Ribonucleotide reductase, all-alpha domain BJD09_18270 PF02867 Ribonucleotide reductase, barrel domain BJD09_18270 PF03477 ATP cone domain BJD09_18280 PF00268 Ribonucleotide reductase, small chain BJD09_18315 PF08546 Ketopantoate reductase PanE/ApbA C terminal BJD09_18315 PF02558 Ketopantoate reductase PanE/ApbA BJD09_18325 PF01061 ABC-2 type transporter BJD09_18330 PF00005 ABC transporter BJD09_18335 PF00970 Oxidoreductase FAD-binding domain BJD09_18335 PF00175 Oxidoreductase NAD-binding domain BJD09_18335 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD09_18340 PF01965 DJ-1/PfpI family BJD09_18340 PF12833 Helix-turn-helix domain BJD09_18350 PF00593 TonB dependent receptor BJD09_18350 PF07715 TonB-dependent Receptor Plug Domain BJD09_18360 PF16916 Dimerisation domain of Zinc Transporter BJD09_18360 PF01545 Cation efflux family BJD09_18365 PF02583 Metal-sensitive transcriptional repressor BJD09_18370 PF01229 Glycosyl hydrolases family 39 BJD09_18380 PF01381 Helix-turn-helix BJD09_18390 PF00005 ABC transporter BJD09_18405 PF04820 Tryptophan halogenase BJD09_18430 PF02798 Glutathione S-transferase, N-terminal domain BJD09_18430 PF00043 Glutathione S-transferase, C-terminal domain BJD09_18435 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BJD09_18435 PF00326 Prolyl oligopeptidase family BJD09_18460 PF00490 Delta-aminolevulinic acid dehydratase BJD09_18475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_18475 PF03466 LysR substrate binding domain BJD09_18485 PF00258 Flavodoxin BJD09_18485 PF00667 FAD binding domain BJD09_18485 PF00175 Oxidoreductase NAD-binding domain BJD09_18495 PF08501 Shikimate dehydrogenase substrate binding domain BJD09_18495 PF01488 Shikimate / quinate 5-dehydrogenase BJD09_18495 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BJD09_18510 PF13307 Helicase C-terminal domain BJD09_18510 PF06733 DEAD_2 BJD09_18520 PF00199 Catalase BJD09_18520 PF06628 Catalase-related immune-responsive BJD09_18525 PF00199 Catalase BJD09_18525 PF06628 Catalase-related immune-responsive BJD09_18550 PF01207 Dihydrouridine synthase (Dus) BJD09_18560 PF00072 Response regulator receiver domain BJD09_18560 PF00486 Transcriptional regulatory protein, C terminal BJD09_18565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_18565 PF00672 HAMP domain BJD09_18565 PF00512 His Kinase A (phospho-acceptor) domain BJD09_18580 PF06167 Glucose-regulated metallo-peptidase M90 BJD09_18595 PF02237 Biotin protein ligase C terminal domain BJD09_18595 PF08279 HTH domain BJD09_18595 PF03099 Biotin/lipoate A/B protein ligase family BJD09_18600 PF03309 Type III pantothenate kinase BJD09_18615 PF02223 Thymidylate kinase BJD09_18645 PF00491 Arginase family BJD09_18660 PF05532 CsbD-like BJD09_18665 PF00579 tRNA synthetases class I (W and Y) BJD09_18690 PF00892 EamA-like transporter family BJD09_18715 PF00005 ABC transporter BJD09_18720 PF13533 Biotin-lipoyl like BJD09_18725 PF07730 Histidine kinase BJD09_18730 PF00196 Bacterial regulatory proteins, luxR family BJD09_18730 PF00072 Response regulator receiver domain BJD09_18745 PF00199 Catalase BJD09_18750 PF08281 Sigma-70, region 4 BJD09_18750 PF04542 Sigma-70 region 2 BJD09_18760 PF00883 Cytosol aminopeptidase family, catalytic domain BJD09_18760 PF02789 Cytosol aminopeptidase family, N-terminal domain BJD09_18765 PF13419 Haloacid dehalogenase-like hydrolase BJD09_18770 PF01594 AI-2E family transporter BJD09_18790 PF00595 PDZ domain BJD09_18820 PF00512 His Kinase A (phospho-acceptor) domain BJD09_18820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_18820 PF08521 Two-component sensor kinase N-terminal BJD09_18825 PF00072 Response regulator receiver domain BJD09_18825 PF00486 Transcriptional regulatory protein, C terminal BJD09_18830 PF01370 NAD dependent epimerase/dehydratase family BJD09_18830 PF08338 Domain of unknown function (DUF1731) BJD09_18865 PF01139 tRNA-splicing ligase RtcB BJD09_18890 PF00440 Bacterial regulatory proteins, tetR family BJD09_18895 PF00175 Oxidoreductase NAD-binding domain BJD09_18895 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD09_18895 PF00970 Oxidoreductase FAD-binding domain BJD09_18900 PF00487 Fatty acid desaturase BJD09_18905 PF00563 EAL domain BJD09_18905 PF12792 CSS motif domain associated with EAL BJD09_18920 PF13335 Magnesium chelatase, subunit ChlI C-terminal BJD09_18920 PF01078 Magnesium chelatase, subunit ChlI BJD09_18925 PF04380 Membrane fusogenic activity BJD09_18930 PF00543 Nitrogen regulatory protein P-II BJD09_18960 PF17284 Spermidine synthase tetramerisation domain BJD09_18965 PF17810 Arginine decarboxylase helical bundle domain BJD09_18965 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BJD09_18965 PF17944 Arginine decarboxylase C-terminal helical extension BJD09_18970 PF00501 AMP-binding enzyme BJD09_18970 PF13193 AMP-binding enzyme C-terminal domain BJD09_18970 PF00668 Condensation domain BJD09_18970 PF00975 Thioesterase domain BJD09_18970 PF00550 Phosphopantetheine attachment site BJD09_18975 PF03033 Glycosyltransferase family 28 N-terminal domain BJD09_18980 PF01757 Acyltransferase family BJD09_18985 PF00106 short chain dehydrogenase BJD09_19000 PF00750 tRNA synthetases class I (R) BJD09_19000 PF03485 Arginyl tRNA synthetase N terminal domain BJD09_19000 PF05746 DALR anticodon binding domain BJD09_19005 PF04002 RadC-like JAB domain BJD09_19010 PF02441 Flavoprotein BJD09_19010 PF04127 DNA / pantothenate metabolism flavoprotein BJD09_19015 PF00692 dUTPase BJD09_19020 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BJD09_19020 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BJD09_19020 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BJD09_19020 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BJD09_19035 PF00535 Glycosyl transferase family 2 BJD09_19040 PF01370 NAD dependent epimerase/dehydratase family BJD09_19055 PF17762 HTH domain found in ParB protein BJD09_19055 PF02195 ParB-like nuclease domain BJD09_19060 PF13614 AAA domain BJD09_19070 PF00156 Phosphoribosyl transferase domain BJD09_19075 PF03372 Endonuclease/Exonuclease/phosphatase family BJD09_19080 PF07690 Major Facilitator Superfamily BJD09_19090 PF03702 Anhydro-N-acetylmuramic acid kinase BJD09_19095 PF01551 Peptidase family M23 BJD09_19095 PF04225 Opacity-associated protein A LysM-like domain BJD09_19100 PF00579 tRNA synthetases class I (W and Y) BJD09_19135 PF14850 DNA-binding domain of Proline dehydrogenase BJD09_19135 PF01619 Proline dehydrogenase BJD09_19135 PF00171 Aldehyde dehydrogenase family BJD09_19135 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BJD09_19145 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BJD09_19145 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BJD09_19150 PF00115 Cytochrome C and Quinol oxidase polypeptide I BJD09_19160 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 BJD09_19165 PF00510 Cytochrome c oxidase subunit III BJD09_19190 PF01040 UbiA prenyltransferase family BJD09_19200 PF13593 SBF-like CPA transporter family (DUF4137) BJD09_19205 PF01807 CHC2 zinc finger BJD09_19205 PF08275 DNA primase catalytic core, N-terminal domain BJD09_19205 PF08278 DNA primase DnaG DnaB-binding BJD09_19205 PF10410 DnaB-helicase binding domain of primase BJD09_19210 PF03631 Virulence factor BrkB BJD09_19220 PF09424 Yqey-like protein BJD09_19225 PF01165 Ribosomal protein S21 BJD09_19230 PF00814 Glycoprotease family BJD09_19235 PF02152 Dihydroneopterin aldolase BJD09_19240 PF01915 Glycosyl hydrolase family 3 C-terminal domain BJD09_19240 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD09_19240 PF14310 Fibronectin type III-like domain BJD09_19245 PF07995 Glucose / Sorbosone dehydrogenase BJD09_19250 PF05360 yiaA/B two helix domain BJD09_19265 PF13520 Amino acid permease BJD09_19275 PF13378 Enolase C-terminal domain-like BJD09_19275 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BJD09_19285 PF01510 N-acetylmuramoyl-L-alanine amidase BJD09_19290 PF01427 D-ala-D-ala dipeptidase BJD09_19335 PF07063 Domain of unknown function (DUF1338) BJD09_19340 PF00873 AcrB/AcrD/AcrF family BJD09_19345 PF00873 AcrB/AcrD/AcrF family BJD09_19350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD09_19355 PF07687 Peptidase dimerisation domain BJD09_19355 PF01546 Peptidase family M20/M25/M40 BJD09_19360 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BJD09_19360 PF14489 QueF-like protein BJD09_19365 PF01476 LysM domain BJD09_19365 PF04972 BON domain BJD09_19375 PF09827 CRISPR associated protein Cas2 BJD09_19380 PF01867 CRISPR associated protein Cas1 BJD09_19400 PF09704 CRISPR-associated protein (Cas_Cas5) BJD09_19415 PF03971 Monomeric isocitrate dehydrogenase BJD09_19425 PF03466 LysR substrate binding domain BJD09_19425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_19430 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) BJD09_19435 PF07497 Rho termination factor, RNA-binding domain BJD09_19435 PF07498 Rho termination factor, N-terminal domain BJD09_19435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BJD09_19440 PF00085 Thioredoxin BJD09_19445 PF00271 Helicase conserved C-terminal domain BJD09_19445 PF12300 ATP-dependent RNA helicase RhlB BJD09_19445 PF00270 DEAD/DEAH box helicase BJD09_19450 PF00005 ABC transporter BJD09_19455 PF18075 FtsX extracellular domain BJD09_19460 PF00072 Response regulator receiver domain BJD09_19465 PF03167 Uracil DNA glycosylase superfamily BJD09_19470 PF04542 Sigma-70 region 2 BJD09_19470 PF04545 Sigma-70, region 4 BJD09_19475 PF03458 UPF0126 domain BJD09_19480 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD09_19495 PF13417 Glutathione S-transferase, N-terminal domain BJD09_19495 PF00043 Glutathione S-transferase, C-terminal domain BJD09_19500 PF17764 3′ DNA-binding domain (3′BD) BJD09_19500 PF00271 Helicase conserved C-terminal domain BJD09_19500 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BJD09_19500 PF00270 DEAD/DEAH box helicase BJD09_19500 PF18074 Primosomal protein N C-terminal domain BJD09_19520 PF01554 MatE BJD09_19525 PF01343 Peptidase family S49 BJD09_19550 PF01300 Telomere recombination BJD09_19555 PF01751 Toprim domain BJD09_19555 PF01131 DNA topoisomerase BJD09_19555 PF13368 Topoisomerase C-terminal repeat BJD09_19565 PF00114 Pilin (bacterial filament) BJD09_19565 PF07963 Prokaryotic N-terminal methylation motif BJD09_19570 PF04361 Protein of unknown function (DUF494) BJD09_19575 PF17782 DprA winged helix domain BJD09_19575 PF02481 DNA recombination-mediator protein A BJD09_19580 PF01476 LysM domain BJD09_19585 PF01327 Polypeptide deformylase BJD09_19590 PF02911 Formyl transferase, C-terminal domain BJD09_19590 PF00551 Formyl transferase BJD09_19595 PF01029 NusB family BJD09_19595 PF01189 16S rRNA methyltransferase RsmB/F BJD09_19610 PF00535 Glycosyl transferase family 2 BJD09_19630 PF00925 GTP cyclohydrolase II BJD09_19650 PF03279 Bacterial lipid A biosynthesis acyltransferase BJD09_19655 PF02580 D-Tyr-tRNA(Tyr) deacylase BJD09_19660 PF04545 Sigma-70, region 4 BJD09_19660 PF04539 Sigma-70 region 3 BJD09_19660 PF04542 Sigma-70 region 2 BJD09_19660 PF03979 Sigma-70 factor, region 1.1 BJD09_19660 PF04546 Sigma-70, non-essential region BJD09_19660 PF00140 Sigma-70 factor, region 1.2 BJD09_19695 PF00557 Metallopeptidase family M24 BJD09_19740 PF02525 Flavodoxin-like fold BJD09_19760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_19760 PF02203 Tar ligand binding domain homologue BJD09_19760 PF00672 HAMP domain BJD09_19780 PF01527 Transposase BJD09_19790 PF01042 Endoribonuclease L-PSP BJD09_19795 PF03466 LysR substrate binding domain BJD09_19795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_19805 PF00005 ABC transporter BJD09_19820 PF00593 TonB dependent receptor BJD09_19820 PF07715 TonB-dependent Receptor Plug Domain BJD09_19865 PF08240 Alcohol dehydrogenase GroES-like domain BJD09_19865 PF00107 Zinc-binding dehydrogenase BJD09_19865 PF13823 Alcohol dehydrogenase GroES-associated BJD09_19880 PF00005 ABC transporter BJD09_19880 PF00664 ABC transporter transmembrane region BJD09_19890 PF03275 UDP-galactopyranose mutase BJD09_19900 PF16363 GDP-mannose 4,6 dehydratase BJD09_19920 PF02322 Cytochrome bd terminal oxidase subunit II BJD09_19925 PF01654 Cytochrome bd terminal oxidase subunit I BJD09_19940 PF02954 Bacterial regulatory protein, Fis family BJD09_19940 PF00158 Sigma-54 interaction domain BJD09_19940 PF00072 Response regulator receiver domain BJD09_19955 PF01339 CheB methylesterase BJD09_19955 PF01739 CheR methyltransferase, SAM binding domain BJD09_19955 PF03705 CheR methyltransferase, all-alpha domain BJD09_19955 PF08448 PAS fold BJD09_19975 PF05067 Manganese containing catalase BJD09_19980 PF05974 Domain of unknown function (DUF892) BJD09_20005 PF06580 Histidine kinase BJD09_20005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_20005 PF00672 HAMP domain BJD09_20005 PF02743 Cache domain BJD09_20010 PF00072 Response regulator receiver domain BJD09_20010 PF04397 LytTr DNA-binding domain BJD09_20020 PF13520 Amino acid permease BJD09_20055 PF00248 Aldo/keto reductase family BJD09_20060 PF03358 NADPH-dependent FMN reductase BJD09_20065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_20065 PF03466 LysR substrate binding domain BJD09_20075 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BJD09_20085 PF03167 Uracil DNA glycosylase superfamily BJD09_20090 PF02469 Fasciclin domain BJD09_20100 PF00999 Sodium/hydrogen exchanger family BJD09_20105 PF00005 ABC transporter BJD09_20110 PF01061 ABC-2 type transporter BJD09_20140 PF00691 OmpA family BJD09_20140 PF13677 Membrane MotB of proton-channel complex MotA/MotB BJD09_20145 PF01618 MotA/TolQ/ExbB proton channel family BJD09_20155 PF01641 SelR domain BJD09_20165 PF01037 Lrp/AsnC ligand binding domain BJD09_20170 PF01266 FAD dependent oxidoreductase BJD09_20175 PF00842 Alanine racemase, C-terminal domain BJD09_20175 PF01168 Alanine racemase, N-terminal domain BJD09_20195 PF00989 PAS fold BJD09_20195 PF00512 His Kinase A (phospho-acceptor) domain BJD09_20195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_20205 PF07995 Glucose / Sorbosone dehydrogenase BJD09_20215 PF08468 Methyltransferase small domain N-terminal BJD09_20215 PF05175 Methyltransferase small domain BJD09_20220 PF01479 S4 domain BJD09_20220 PF00849 RNA pseudouridylate synthase BJD09_20225 PF13419 Haloacid dehalogenase-like hydrolase BJD09_20245 PF18415 Histidine kinase receptor ArcB trans-membrane domain BJD09_20245 PF01627 Hpt domain BJD09_20245 PF00989 PAS fold BJD09_20245 PF00072 Response regulator receiver domain BJD09_20245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_20245 PF00512 His Kinase A (phospho-acceptor) domain BJD09_20255 PF04461 Protein of unknown function (DUF520) BJD09_20260 PF00892 EamA-like transporter family BJD09_20265 PF00005 ABC transporter BJD09_20265 PF09383 NIL domain BJD09_20270 PF00528 Binding-protein-dependent transport system inner membrane component BJD09_20275 PF03180 NLPA lipoprotein BJD09_20310 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BJD09_20310 PF02817 e3 binding domain BJD09_20310 PF00364 Biotin-requiring enzyme BJD09_20320 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BJD09_20320 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD09_20340 PF00119 ATP synthase A chain BJD09_20345 PF00137 ATP synthase subunit C BJD09_20350 PF00430 ATP synthase B/B' CF(0) BJD09_20355 PF00213 ATP synthase delta (OSCP) subunit BJD09_20360 PF02874 ATP synthase alpha/beta family, beta-barrel domain BJD09_20360 PF00306 ATP synthase alpha/beta chain, C terminal domain BJD09_20360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BJD09_20365 PF00231 ATP synthase BJD09_20370 PF02874 ATP synthase alpha/beta family, beta-barrel domain BJD09_20370 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BJD09_20375 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BJD09_20375 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BJD09_20390 PF12804 MobA-like NTP transferase domain BJD09_20390 PF00132 Bacterial transferase hexapeptide (six repeats) BJD09_20390 PF14602 Hexapeptide repeat of succinyl-transferase BJD09_20410 PF02687 FtsX-like permease family BJD09_20410 PF12704 MacB-like periplasmic core domain BJD09_20415 PF02687 FtsX-like permease family BJD09_20415 PF00005 ABC transporter BJD09_20415 PF12704 MacB-like periplasmic core domain BJD09_20420 PF02687 FtsX-like permease family BJD09_20420 PF12704 MacB-like periplasmic core domain BJD09_20420 PF00005 ABC transporter BJD09_20425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD09_20430 PF01380 SIS domain BJD09_20460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BJD09_20465 PF05275 Copper resistance protein B precursor (CopB) BJD09_20470 PF07732 Multicopper oxidase BJD09_20470 PF07731 Multicopper oxidase BJD09_20470 PF00394 Multicopper oxidase BJD09_20485 PF01432 Peptidase family M3 BJD09_20495 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD09_20495 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD09_20500 PF07977 FabA-like domain BJD09_20505 PF11799 impB/mucB/samB family C-terminal domain BJD09_20505 PF00817 impB/mucB/samB family BJD09_20510 PF13419 Haloacid dehalogenase-like hydrolase BJD09_20515 PF07715 TonB-dependent Receptor Plug Domain BJD09_20515 PF00593 TonB dependent receptor BJD09_20520 PF00756 Putative esterase BJD09_20530 PF13185 GAF domain BJD09_20545 PF01242 6-pyruvoyl tetrahydropterin synthase BJD09_20555 PF00593 TonB dependent receptor BJD09_20555 PF07715 TonB-dependent Receptor Plug Domain BJD09_20565 PF00271 Helicase conserved C-terminal domain BJD09_20565 PF00270 DEAD/DEAH box helicase BJD09_20580 PF02798 Glutathione S-transferase, N-terminal domain BJD09_20580 PF14497 Glutathione S-transferase, C-terminal domain BJD09_20590 PF00437 Type II/IV secretion system protein BJD09_20610 PF00571 CBS domain BJD09_20610 PF00291 Pyridoxal-phosphate dependent enzyme BJD09_20615 PF01053 Cys/Met metabolism PLP-dependent enzyme BJD09_20625 PF14524 Wzt C-terminal domain BJD09_20625 PF00005 ABC transporter BJD09_20635 PF00535 Glycosyl transferase family 2 BJD09_20660 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BJD09_20660 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD09_20665 PF01370 NAD dependent epimerase/dehydratase family BJD09_20675 PF00106 short chain dehydrogenase BJD09_20680 PF01565 FAD binding domain BJD09_20680 PF04030 D-arabinono-1,4-lactone oxidase BJD09_20685 PF01040 UbiA prenyltransferase family BJD09_20695 PF01012 Electron transfer flavoprotein domain BJD09_20695 PF00766 Electron transfer flavoprotein FAD-binding domain BJD09_20700 PF01012 Electron transfer flavoprotein domain BJD09_20705 PF16363 GDP-mannose 4,6 dehydratase BJD09_20710 PF00483 Nucleotidyl transferase BJD09_20715 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BJD09_20720 PF04321 RmlD substrate binding domain BJD09_20725 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BJD09_20725 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BJD09_20725 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BJD09_20735 PF01050 Mannose-6-phosphate isomerase BJD09_20735 PF00483 Nucleotidyl transferase BJD09_20740 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BJD09_20740 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BJD09_20740 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BJD09_20740 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BJD09_20745 PF01144 Coenzyme A transferase BJD09_20750 PF01144 Coenzyme A transferase BJD09_20755 PF14307 Glycosyltransferase WbsX BJD09_20755 PF05045 Rhamnan synthesis protein F BJD09_20775 PF03886 ABC-type transport auxiliary lipoprotein component BJD09_20775 PF02470 MlaD protein BJD09_20780 PF00005 ABC transporter BJD09_20785 PF02405 Permease MlaE BJD09_20795 PF00816 H-NS histone family BJD09_20800 PF04073 Aminoacyl-tRNA editing domain BJD09_20800 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BJD09_20800 PF03129 Anticodon binding domain BJD09_20810 PF01066 CDP-alcohol phosphatidyltransferase BJD09_20825 PF00544 Pectate lyase BJD09_20830 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BJD09_20830 PF01464 Transglycosylase SLT domain BJD09_20835 PF00593 TonB dependent receptor BJD09_20835 PF07715 TonB-dependent Receptor Plug Domain BJD09_20840 PF00133 tRNA synthetases class I (I, L, M and V) BJD09_20840 PF08264 Anticodon-binding domain of tRNA BJD09_20840 PF10458 Valyl tRNA synthetase tRNA binding arm BJD09_20855 PF02789 Cytosol aminopeptidase family, N-terminal domain BJD09_20855 PF00883 Cytosol aminopeptidase family, catalytic domain BJD09_20865 PF03739 Lipopolysaccharide export system permease LptF/LptG BJD09_20880 PF02899 Phage integrase, N-terminal SAM-like domain BJD09_20880 PF00589 Phage integrase family BJD09_20890 PF13098 Thioredoxin-like domain BJD09_20890 PF10411 Disulfide bond isomerase protein N-terminus BJD09_20905 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BJD09_20905 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BJD09_20905 PF02769 AIR synthase related protein, C-terminal domain BJD09_20915 PF03895 YadA-like membrane anchor domain BJD09_20915 PF13018 Extended Signal Peptide of Type V secretion system BJD09_20915 PF05658 Head domain of trimeric autotransporter adhesin BJD09_20915 PF05662 Coiled stalk of trimeric autotransporter adhesin BJD09_20920 PF04151 Bacterial pre-peptidase C-terminal domain BJD09_20920 PF00082 Subtilase family BJD09_20925 PF13018 Extended Signal Peptide of Type V secretion system BJD09_20925 PF03895 YadA-like membrane anchor domain BJD09_20925 PF05658 Head domain of trimeric autotransporter adhesin BJD09_20925 PF05662 Coiled stalk of trimeric autotransporter adhesin BJD09_20930 PF00082 Subtilase family BJD09_20930 PF04151 Bacterial pre-peptidase C-terminal domain BJD09_20935 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BJD09_20935 PF00437 Type II/IV secretion system protein BJD09_20945 PF00482 Type II secretion system (T2SS), protein F BJD09_20950 PF08334 Type II secretion system (T2SS), protein G BJD09_20955 PF12019 Type II transport protein GspH BJD09_20960 PF07963 Prokaryotic N-terminal methylation motif BJD09_20970 PF03934 Type II secretion system (T2SS), protein K BJD09_20975 PF05137 Fimbrial assembly protein (PilN) BJD09_20980 PF10741 Type II secretion system (T2SS), protein M subtype b BJD09_20990 PF00263 Bacterial type II and III secretion system protein BJD09_20990 PF03958 Bacterial type II/III secretion system short domain BJD09_21000 PF00392 Bacterial regulatory proteins, gntR family BJD09_21000 PF07702 UTRA domain BJD09_21010 PF07715 TonB-dependent Receptor Plug Domain BJD09_21010 PF00593 TonB dependent receptor BJD09_21055 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BJD09_21055 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BJD09_21070 PF03552 Cellulose synthase BJD09_21070 PF00535 Glycosyl transferase family 2 BJD09_21070 PF07238 PilZ domain BJD09_21075 PF03170 Bacterial cellulose synthase subunit BJD09_21080 PF01270 Glycosyl hydrolases family 8 BJD09_21085 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) BJD09_21105 PF03960 ArsC family BJD09_21115 PF01327 Polypeptide deformylase BJD09_21120 PF02645 Uncharacterised protein, DegV family COG1307 BJD09_21150 PF01527 Transposase BJD09_21165 PF00462 Glutaredoxin BJD09_21170 PF01522 Polysaccharide deacetylase BJD09_21175 PF00593 TonB dependent receptor BJD09_21175 PF07715 TonB-dependent Receptor Plug Domain BJD09_21205 PF03193 RsgA GTPase BJD09_21220 PF00128 Alpha amylase, catalytic domain BJD09_21235 PF00356 Bacterial regulatory proteins, lacI family BJD09_21240 PF00106 short chain dehydrogenase BJD09_21245 PF03600 Citrate transporter BJD09_21260 PF00072 Response regulator receiver domain BJD09_21260 PF00486 Transcriptional regulatory protein, C terminal BJD09_21265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_21265 PF08521 Two-component sensor kinase N-terminal BJD09_21265 PF00512 His Kinase A (phospho-acceptor) domain BJD09_21280 PF00072 Response regulator receiver domain BJD09_21280 PF00196 Bacterial regulatory proteins, luxR family BJD09_21295 PF00248 Aldo/keto reductase family BJD09_21305 PF03466 LysR substrate binding domain BJD09_21305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_21315 PF07690 Major Facilitator Superfamily BJD09_21320 PF02743 Cache domain BJD09_21320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_21320 PF00512 His Kinase A (phospho-acceptor) domain BJD09_21330 PF00375 Sodium:dicarboxylate symporter family BJD09_21335 PF01515 Phosphate acetyl/butaryl transferase BJD09_21335 PF03949 Malic enzyme, NAD binding domain BJD09_21335 PF00390 Malic enzyme, N-terminal domain BJD09_21360 PF03279 Bacterial lipid A biosynthesis acyltransferase BJD09_21370 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BJD09_21375 PF02321 Outer membrane efflux protein BJD09_21390 PF17151 Periplasmic sensor domain BJD09_21390 PF00990 Diguanylate cyclase, GGDEF domain BJD09_21395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_21400 PF00330 Aconitase family (aconitate hydratase) BJD09_21405 PF00694 Aconitase C-terminal domain BJD09_21410 PF00180 Isocitrate/isopropylmalate dehydrogenase BJD09_21420 PF00291 Pyridoxal-phosphate dependent enzyme BJD09_21430 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BJD09_21430 PF00205 Thiamine pyrophosphate enzyme, central domain BJD09_21430 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BJD09_21435 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BJD09_21435 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BJD09_21445 PF00672 HAMP domain BJD09_21445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_21450 PF07715 TonB-dependent Receptor Plug Domain BJD09_21450 PF00593 TonB dependent receptor BJD09_21460 PF01964 Radical SAM ThiC family BJD09_21460 PF13667 ThiC-associated domain BJD09_21465 PF18500 CadC C-terminal domain 1 BJD09_21465 PF00486 Transcriptional regulatory protein, C terminal BJD09_21470 PF12833 Helix-turn-helix domain BJD09_21475 PF00593 TonB dependent receptor BJD09_21475 PF07715 TonB-dependent Receptor Plug Domain BJD09_21485 PF00719 Inorganic pyrophosphatase BJD09_21495 PF03030 Inorganic H+ pyrophosphatase BJD09_21505 PF00365 Phosphofructokinase BJD09_21515 PF08245 Mur ligase middle domain BJD09_21515 PF02875 Mur ligase family, glutamate ligase domain BJD09_21515 PF01225 Mur ligase family, catalytic domain BJD09_21525 PF01062 Bestrophin, RFP-TM, chloride channel BJD09_21530 PF01569 PAP2 superfamily BJD09_21550 PF00520 Ion transport protein BJD09_21550 PF00027 Cyclic nucleotide-binding domain BJD09_21555 PF00202 Aminotransferase class-III BJD09_21570 PF01593 Flavin containing amine oxidoreductase BJD09_21575 PF00034 Cytochrome c BJD09_21575 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BJD09_21585 PF00155 Aminotransferase class I and II BJD09_21590 PF00127 Copper binding proteins, plastocyanin/azurin family BJD09_21595 PF17874 MalT-like TPR region BJD09_21595 PF00196 Bacterial regulatory proteins, luxR family BJD09_21600 PF00202 Aminotransferase class-III BJD09_21615 PF02581 Thiamine monophosphate synthase BJD09_21620 PF00301 Rubredoxin BJD09_21625 PF13369 Transglutaminase-like superfamily BJD09_21635 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BJD09_21645 PF01812 5-formyltetrahydrofolate cyclo-ligase family BJD09_21655 PF05164 Cell division protein ZapA BJD09_21665 PF03695 Uncharacterised protein family (UPF0149) BJD09_21670 PF00557 Metallopeptidase family M24 BJD09_21670 PF05195 Aminopeptidase P, N-terminal domain BJD09_21680 PF00557 Metallopeptidase family M24 BJD09_21695 PF04055 Radical SAM superfamily BJD09_21695 PF06969 HemN C-terminal domain BJD09_21700 PF01725 Ham1 family BJD09_21710 PF01138 3' exoribonuclease family, domain 1 BJD09_21710 PF03725 3' exoribonuclease family, domain 2 BJD09_21715 PF03755 YicC-like family, N-terminal region BJD09_21715 PF08340 Domain of unknown function (DUF1732) BJD09_21720 PF00625 Guanylate kinase BJD09_21725 PF01192 RNA polymerase Rpb6 BJD09_21730 PF13291 ACT domain BJD09_21730 PF04607 Region found in RelA / SpoT proteins BJD09_21730 PF02824 TGS domain BJD09_21735 PF01042 Endoribonuclease L-PSP BJD09_21740 PF00270 DEAD/DEAH box helicase BJD09_21740 PF00271 Helicase conserved C-terminal domain BJD09_21740 PF17191 RecG wedge domain BJD09_21745 PF01156 Inosine-uridine preferring nucleoside hydrolase BJD09_21750 PF01197 Ribosomal protein L31 BJD09_21755 PF00285 Citrate synthase, C-terminal domain BJD09_21765 PF17092 Penicillin-binding protein OB-like domain BJD09_21765 PF00905 Penicillin binding protein transpeptidase domain BJD09_21765 PF00912 Transglycosylase BJD09_21790 PF07660 Secretin and TonB N terminus short domain BJD09_21790 PF11741 AMIN domain BJD09_21790 PF03958 Bacterial type II/III secretion system short domain BJD09_21790 PF00263 Bacterial type II and III secretion system protein BJD09_21800 PF07726 ATPase family associated with various cellular activities (AAA) BJD09_21800 PF17863 AAA lid domain BJD09_21820 PF00092 von Willebrand factor type A domain BJD09_21820 PF07584 Aerotolerance regulator N-terminal BJD09_21835 PF00375 Sodium:dicarboxylate symporter family BJD09_21840 PF02779 Transketolase, pyrimidine binding domain BJD09_21840 PF02780 Transketolase, C-terminal domain BJD09_21840 PF00456 Transketolase, thiamine diphosphate binding domain BJD09_21845 PF12146 Serine aminopeptidase, S33 BJD09_21850 PF07715 TonB-dependent Receptor Plug Domain BJD09_21850 PF00593 TonB dependent receptor BJD09_21860 PF04225 Opacity-associated protein A LysM-like domain BJD09_21860 PF01551 Peptidase family M23 BJD09_21865 PF03734 L,D-transpeptidase catalytic domain BJD09_21865 PF01476 LysM domain BJD09_21900 PF03459 TOBE domain BJD09_21900 PF00005 ABC transporter BJD09_21905 PF00528 Binding-protein-dependent transport system inner membrane component BJD09_21915 PF04273 Putative phosphatase (DUF442) BJD09_21915 PF00753 Metallo-beta-lactamase superfamily BJD09_21925 PF03922 OmpW family BJD09_21930 PF03922 OmpW family BJD09_21940 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BJD09_21940 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BJD09_21965 PF00162 Phosphoglycerate kinase BJD09_21975 PF02887 Pyruvate kinase, alpha/beta domain BJD09_21975 PF00224 Pyruvate kinase, barrel domain BJD09_21990 PF00274 Fructose-bisphosphate aldolase class-I BJD09_21995 PF01661 Macro domain BJD09_22005 PF00291 Pyridoxal-phosphate dependent enzyme BJD09_22010 PF10414 Sirohaem synthase dimerisation region BJD09_22010 PF14824 Sirohaem biosynthesis protein central BJD09_22010 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BJD09_22015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_22015 PF03466 LysR substrate binding domain BJD09_22030 PF00072 Response regulator receiver domain BJD09_22030 PF01627 Hpt domain BJD09_22030 PF00512 His Kinase A (phospho-acceptor) domain BJD09_22030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_22050 PF01507 Phosphoadenosine phosphosulfate reductase family BJD09_22055 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BJD09_22055 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BJD09_22060 PF00667 FAD binding domain BJD09_22060 PF00258 Flavodoxin BJD09_22060 PF00175 Oxidoreductase NAD-binding domain BJD09_22065 PF01507 Phosphoadenosine phosphosulfate reductase family BJD09_22070 PF00009 Elongation factor Tu GTP binding domain BJD09_22075 PF00529 HlyD membrane-fusion protein of T1SS BJD09_22075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD09_22080 PF00873 AcrB/AcrD/AcrF family BJD09_22120 PF11838 ERAP1-like C-terminal domain BJD09_22120 PF01433 Peptidase family M1 domain BJD09_22130 PF08032 RNA 2'-O ribose methyltransferase substrate binding BJD09_22130 PF00588 SpoU rRNA Methylase family BJD09_22135 PF00135 Carboxylesterase family BJD09_22145 PF10566 Glycoside hydrolase 97 BJD09_22145 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation BJD09_22145 PF14508 Glycosyl-hydrolase 97 N-terminal BJD09_22150 PF00703 Glycosyl hydrolases family 2 BJD09_22150 PF02837 Glycosyl hydrolases family 2, sugar binding domain BJD09_22150 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain BJD09_22160 PF00356 Bacterial regulatory proteins, lacI family BJD09_22170 PF01741 Large-conductance mechanosensitive channel, MscL BJD09_22175 PF01557 Fumarylacetoacetate (FAA) hydrolase family BJD09_22195 PF02080 TrkA-C domain BJD09_22195 PF03600 Citrate transporter BJD09_22200 PF02390 Putative methyltransferase BJD09_22210 PF05690 Thiazole biosynthesis protein ThiG BJD09_22220 PF03797 Autotransporter beta-domain BJD09_22220 PF00657 GDSL-like Lipase/Acylhydrolase BJD09_22240 PF13676 TIR domain BJD09_22270 PF00512 His Kinase A (phospho-acceptor) domain BJD09_22270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_22270 PF13188 PAS domain BJD09_22270 PF08448 PAS fold BJD09_22270 PF00072 Response regulator receiver domain BJD09_22315 PF01527 Transposase BJD09_22365 PF13426 PAS domain BJD09_22365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_22365 PF00072 Response regulator receiver domain BJD09_22370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_22370 PF13426 PAS domain BJD09_22370 PF00072 Response regulator receiver domain BJD09_22395 PF04002 RadC-like JAB domain BJD09_22465 PF00128 Alpha amylase, catalytic domain BJD09_22465 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BJD09_22480 PF00072 Response regulator receiver domain BJD09_22480 PF00486 Transcriptional regulatory protein, C terminal BJD09_22485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_22485 PF00512 His Kinase A (phospho-acceptor) domain BJD09_22485 PF00989 PAS fold BJD09_22485 PF16736 Single Cache-like BJD09_22495 PF13276 HTH-like domain BJD09_22495 PF13333 Integrase core domain BJD09_22495 PF00665 Integrase core domain BJD09_22515 PF01121 Dephospho-CoA kinase BJD09_22520 PF06750 Bacterial Peptidase A24 N-terminal domain BJD09_22520 PF01478 Type IV leader peptidase family BJD09_22530 PF07963 Prokaryotic N-terminal methylation motif BJD09_22530 PF00114 Pilin (bacterial filament) BJD09_22535 PF07963 Prokaryotic N-terminal methylation motif BJD09_22535 PF00114 Pilin (bacterial filament) BJD09_22540 PF00437 Type II/IV secretion system protein BJD09_22540 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BJD09_22550 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BJD09_22550 PF00437 Type II/IV secretion system protein BJD09_22555 PF00437 Type II/IV secretion system protein BJD09_22555 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BJD09_22560 PF00158 Sigma-54 interaction domain BJD09_22560 PF00072 Response regulator receiver domain BJD09_22560 PF02954 Bacterial regulatory protein, Fis family BJD09_22565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD09_22565 PF00512 His Kinase A (phospho-acceptor) domain BJD09_22570 PF00549 CoA-ligase BJD09_22570 PF08442 ATP-grasp domain BJD09_22575 PF00549 CoA-ligase BJD09_22575 PF02629 CoA binding domain BJD09_22600 PF01129 NAD:arginine ADP-ribosyltransferase BJD09_22630 PF13406 Transglycosylase SLT domain BJD09_22660 PF02540 NAD synthase BJD09_22660 PF00795 Carbon-nitrogen hydrolase BJD09_22670 PF13525 Outer membrane lipoprotein BJD09_22675 PF00849 RNA pseudouridylate synthase BJD09_22690 PF04134 Protein of unknown function, DUF393 BJD09_22695 PF02203 Tar ligand binding domain homologue BJD09_22695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_22695 PF00672 HAMP domain BJD09_22705 PF01011 PQQ enzyme repeat BJD09_22710 PF00982 Glycosyltransferase family 20 BJD09_22715 PF00723 Glycosyl hydrolases family 15 BJD09_22720 PF02358 Trehalose-phosphatase BJD09_22725 PF00593 TonB dependent receptor BJD09_22725 PF07715 TonB-dependent Receptor Plug Domain BJD09_22760 PF01541 GIY-YIG catalytic domain BJD09_22765 PF07715 TonB-dependent Receptor Plug Domain BJD09_22765 PF00593 TonB dependent receptor BJD09_22775 PF00248 Aldo/keto reductase family BJD09_22780 PF09084 NMT1/THI5 like BJD09_22785 PF00528 Binding-protein-dependent transport system inner membrane component BJD09_22790 PF00005 ABC transporter BJD09_22795 PF10431 C-terminal, D2-small domain, of ClpB protein BJD09_22795 PF02861 Clp amino terminal domain, pathogenicity island component BJD09_22795 PF17871 AAA lid domain BJD09_22795 PF07724 AAA domain (Cdc48 subfamily) BJD09_22795 PF00004 ATPase family associated with various cellular activities (AAA) BJD09_22800 PF07715 TonB-dependent Receptor Plug Domain BJD09_22800 PF00593 TonB dependent receptor BJD09_22815 PF12557 Cob(I)alamin adenosyltransferase N terminal BJD09_22815 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BJD09_22820 PF03186 CobD/Cbib protein BJD09_22820 PF17113 Regulatory signalling modulator protein AmpE BJD09_22825 PF00155 Aminotransferase class I and II BJD09_22830 PF07685 CobB/CobQ-like glutamine amidotransferase domain BJD09_22830 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BJD09_22835 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase BJD09_22840 PF02277 Phosphoribosyltransferase BJD09_22850 PF02654 Cobalamin-5-phosphate synthase BJD09_22865 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BJD09_22865 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BJD09_22875 PF07690 Major Facilitator Superfamily BJD09_22880 PF04183 IucA / IucC family BJD09_22880 PF06276 Ferric iron reductase FhuF-like transporter BJD09_22890 PF00593 TonB dependent receptor BJD09_22890 PF07660 Secretin and TonB N terminus short domain BJD09_22890 PF07715 TonB-dependent Receptor Plug Domain BJD09_22915 PF02254 TrkA-N domain BJD09_22915 PF00999 Sodium/hydrogen exchanger family BJD09_22925 PF00067 Cytochrome P450 BJD09_22930 PF00593 TonB dependent receptor BJD09_22930 PF07715 TonB-dependent Receptor Plug Domain BJD09_22935 PF07715 TonB-dependent Receptor Plug Domain BJD09_22935 PF00593 TonB dependent receptor BJD09_22950 PF00593 TonB dependent receptor BJD09_22950 PF07715 TonB-dependent Receptor Plug Domain BJD09_22955 PF00005 ABC transporter BJD09_22955 PF12848 ABC transporter BJD09_22965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD09_22965 PF03466 LysR substrate binding domain BJD09_22985 PF04185 Phosphoesterase family BJD09_22985 PF05506 Domain of unknown function (DUF756) BJD09_22990 PF05506 Domain of unknown function (DUF756) BJD09_22990 PF04185 Phosphoesterase family BJD09_23000 PF07690 Major Facilitator Superfamily BJD09_23015 PF02938 GAD domain BJD09_23015 PF01336 OB-fold nucleic acid binding domain BJD09_23015 PF00152 tRNA synthetases class II (D, K and N) BJD09_23030 PF01709 Transcriptional regulator BJD09_23035 PF02075 Crossover junction endodeoxyribonuclease RuvC BJD09_23040 PF01330 RuvA N terminal domain BJD09_23040 PF07499 RuvA, C-terminal domain BJD09_23045 PF02705 K+ potassium transporter BJD09_23055 PF17864 RuvB AAA lid domain BJD09_23055 PF05496 Holliday junction DNA helicase RuvB P-loop domain BJD09_23055 PF05491 RuvB C-terminal winged helix domain BJD09_23060 PF03061 Thioesterase superfamily BJD09_23065 PF01618 MotA/TolQ/ExbB proton channel family BJD09_23070 PF02472 Biopolymer transport protein ExbD/TolR BJD09_23080 PF07676 WD40-like Beta Propeller Repeat BJD09_23080 PF04052 TolB amino-terminal domain BJD09_23085 PF00691 OmpA family BJD09_23095 PF04055 Radical SAM superfamily BJD09_23105 PF06508 Queuosine biosynthesis protein QueC BJD09_23110 PF13426 PAS domain BJD09_23110 PF13581 Histidine kinase-like ATPase domain BJD09_23110 PF07536 HWE histidine kinase BJD09_23130 PF00672 HAMP domain BJD09_23130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_23130 PF02203 Tar ligand binding domain homologue BJD09_23165 PF09382 RQC domain BJD09_23165 PF16124 RecQ zinc-binding BJD09_23165 PF00570 HRDC domain BJD09_23165 PF00271 Helicase conserved C-terminal domain BJD09_23165 PF00270 DEAD/DEAH box helicase BJD09_23175 PF00210 Ferritin-like domain BJD09_23180 PF04408 Helicase associated domain (HA2) BJD09_23180 PF00270 DEAD/DEAH box helicase BJD09_23180 PF11898 Domain of unknown function (DUF3418) BJD09_23180 PF00271 Helicase conserved C-terminal domain BJD09_23180 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BJD09_23195 PF02685 Glucokinase BJD09_23215 PF04055 Radical SAM superfamily BJD09_23215 PF13186 Iron-sulfur cluster-binding domain BJD09_23220 PF05402 Coenzyme PQQ synthesis protein D (PqqD) BJD09_23225 PF03070 TENA/THI-4/PQQC family BJD09_23230 PF12706 Beta-lactamase superfamily domain BJD09_23235 PF08042 PqqA family BJD09_23240 PF04607 Region found in RelA / SpoT proteins BJD09_23240 PF02824 TGS domain BJD09_23240 PF13291 ACT domain BJD09_23255 PF00535 Glycosyl transferase family 2 BJD09_23260 PF00905 Penicillin binding protein transpeptidase domain BJD09_23260 PF00912 Transglycosylase BJD09_23260 PF14814 Bifunctional transglycosylase second domain BJD09_23270 PF13307 Helicase C-terminal domain BJD09_23270 PF04851 Type III restriction enzyme, res subunit BJD09_23275 PF00814 Glycoprotease family BJD09_23280 PF03747 ADP-ribosylglycohydrolase BJD09_23290 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BJD09_23290 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BJD09_23295 PF00072 Response regulator receiver domain BJD09_23300 PF00072 Response regulator receiver domain BJD09_23310 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BJD09_23310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD09_23465 PF13307 Helicase C-terminal domain BJD09_23465 PF06733 DEAD_2 BJD09_23475 PF01966 HD domain BJD09_23485 PF00486 Transcriptional regulatory protein, C terminal BJD09_23485 PF00072 Response regulator receiver domain BJD09_23505 PF13098 Thioredoxin-like domain BJD09_23505 PF10411 Disulfide bond isomerase protein N-terminus BJD09_23530 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BJD09_23530 PF10135 Rod binding protein BJD09_23560 PF04381 Putative exonuclease, RdgC BJD09_23565 PF00565 Staphylococcal nuclease homologue BJD09_23600 PF13276 HTH-like domain BJD09_23600 PF13683 Integrase core domain BJD09_23605 PF01527 Transposase BJD09_23635 PF02195 ParB-like nuclease domain BJD09_23635 PF17762 HTH domain found in ParB protein BJD09_23670 PF00436 Single-strand binding protein family BJD09_23695 PF00271 Helicase conserved C-terminal domain BJD09_23695 PF04851 Type III restriction enzyme, res subunit BJD09_23725 PF13361 UvrD-like helicase C-terminal domain BJD09_23725 PF00580 UvrD/REP helicase N-terminal domain BJD09_23795 PF11412 Disulphide bond corrector protein DsbC BJD09_23795 PF02683 Cytochrome C biogenesis protein transmembrane region BJD09_23800 PF13361 UvrD-like helicase C-terminal domain BJD09_23800 PF00580 UvrD/REP helicase N-terminal domain BJD09_23885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD09_23885 PF00529 HlyD membrane-fusion protein of T1SS BJD09_23890 PF00873 AcrB/AcrD/AcrF family BJD09_23905 PF00491 Arginase family BJD09_23920 PF04945 YHS domain BJD09_23925 PF05425 Copper resistance protein D BJD09_23955 PF05275 Copper resistance protein B precursor (CopB) BJD09_23960 PF07731 Multicopper oxidase BJD09_23960 PF07732 Multicopper oxidase BJD09_23960 PF00394 Multicopper oxidase BJD09_23990 PF07516 SecA Wing and Scaffold domain BJD09_23990 PF01043 SecA preprotein cross-linking domain BJD09_23990 PF07517 SecA DEAD-like domain BJD09_23990 PF02810 SEC-C motif BJD09_23995 PF02583 Metal-sensitive transcriptional repressor BJD09_24000 PF01545 Cation efflux family BJD09_24000 PF16916 Dimerisation domain of Zinc Transporter BJD09_24015 PF13175 AAA ATPase domain BJD09_24030 PF01451 Low molecular weight phosphotyrosine protein phosphatase BJD09_24035 PF03960 ArsC family BJD09_24040 PF03358 NADPH-dependent FMN reductase BJD09_24045 PF02040 Arsenical pump membrane protein BJD09_24060 PF00529 HlyD membrane-fusion protein of T1SS BJD09_24060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD09_24080 PF09278 MerR, DNA binding BJD09_24080 PF00376 MerR family regulatory protein BJD09_24090 PF01526 Tn3 transposase DDE domain BJD09_24090 PF13700 Domain of unknown function (DUF4158) BJD09_24110 PF00717 Peptidase S24-like BJD09_24115 PF11798 IMS family HHH motif BJD09_24115 PF11799 impB/mucB/samB family C-terminal domain BJD09_24115 PF00817 impB/mucB/samB family BJD09_24115 PF13438 Domain of unknown function (DUF4113) BJD09_24215 PF01527 Transposase BJD09_24300 PF06834 TraU protein BJD09_24400 PF13614 AAA domain BJD09_24410 PF13700 Domain of unknown function (DUF4158) BJD09_24410 PF01526 Tn3 transposase DDE domain BJD09_24430 PF03695 Uncharacterised protein family (UPF0149) BJD09_24430 PF02810 SEC-C motif BJD09_24445 PF00239 Resolvase, N terminal domain BJD09_24445 PF02796 Helix-turn-helix domain of resolvase BJD09_24455 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BJD09_24485 PF03377 TAL effector repeat BJD09_24495 PF02810 SEC-C motif BJD09_24495 PF03695 Uncharacterised protein family (UPF0149) BJD09_24500 PF01526 Tn3 transposase DDE domain BJD09_24500 PF13700 Domain of unknown function (DUF4158) BJD09_24515 PF00239 Resolvase, N terminal domain BJD09_24515 PF02796 Helix-turn-helix domain of resolvase BJD09_24520 PF02796 Helix-turn-helix domain of resolvase BJD09_24520 PF00239 Resolvase, N terminal domain BJD09_24560 PF13406 Transglycosylase SLT domain BJD09_24590 PF03377 TAL effector repeat BJD09_24610 PF07015 VirC1 protein BJD09_24670 PF02796 Helix-turn-helix domain of resolvase BJD09_24670 PF00239 Resolvase, N terminal domain BJD09_24680 PF01527 Transposase BJD09_24700 PF13614 AAA domain BJD09_24715 PF03377 TAL effector repeat BJD09_24735 PF07015 VirC1 protein BJD09_24790 PF18340 DNA relaxase TraI 2B/2B-like domain BJD09_24790 PF08751 TrwC relaxase BJD09_24790 PF18272 single-stranded DNA binding TraI N-terminal subdomain BJD09_24790 PF18340 DNA relaxase TraI 2B/2B-like domain BJD09_24790 PF07057 DNA helicase TraI BJD09_24790 PF07057 DNA helicase TraI BJD09_24790 PF18272 single-stranded DNA binding TraI N-terminal subdomain BJD09_24790 PF08751 TrwC relaxase BJD09_24815 PF01464 Transglycosylase SLT domain BJD09_24820 PF00437 Type II/IV secretion system protein BJD09_24825 PF03743 Bacterial conjugation TrbI-like protein BJD09_24830 PF03524 Conjugal transfer protein BJD09_24890 PF01527 Transposase BJD09_24905 PF08535 KorB domain BJD09_24905 PF06613 KorB C-terminal beta-barrel domain BJD09_24905 PF02195 ParB-like nuclease domain BJD09_24910 PF13614 AAA domain BJD09_24940 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BJD09_24945 PF00239 Resolvase, N terminal domain BJD09_24945 PF02796 Helix-turn-helix domain of resolvase BJD09_24950 PF00239 Resolvase, N terminal domain BJD09_24950 PF02796 Helix-turn-helix domain of resolvase