locus-tag	class	description
BJD09_00040	COG1446	asparaginase
BJD09_00045	COG3142	Participates in the control of copper homeostasis
BJD09_00085	COG3537	Alpha-1,2-mannosidase
BJD09_00095	COG1486	melibiose metabolic process
BJD09_00105	COG0531	amino acid
BJD09_00120	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD09_00135	COG3858	chitin binding
BJD09_00135	COG1388	LysM domain
BJD09_00150	COG0837	glucose binding
BJD09_00155	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BJD09_00165	COG0494	nUDIX hydrolase
BJD09_00175	COG3956	TIGRFAM MazG family protein
BJD09_00180	COG1742	UPF0060 membrane protein
BJD09_00185	COG0330	HflC and HflK could
BJD09_00195	COG0404	The glycine cleavage system catalyzes the degradation of glycine
BJD09_00200	COG0509	glycine decarboxylation via glycine cleavage system
BJD09_00225	COG1960	acyl-CoA dehydrogenase activity
BJD09_00230	COG2267	carboxylic ester hydrolase activity
BJD09_00235	COG1309	transcriptional regulator
BJD09_00245	COG4771	TonB-dependent receptor
BJD09_00255	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
BJD09_00260	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BJD09_00265	COG0463	Glycosyl transferase, family 2
BJD09_00270	COG0516	GMP reductase activity
BJD09_00270	COG0517	IMP dehydrogenase activity
BJD09_00275	COG2982	Protein involved in outer membrane biogenesis
BJD09_00280	COG1272	protein, Hemolysin III
BJD09_00285	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
BJD09_00290	COG0739	heme binding
BJD09_00295	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD09_00300	COG0626	cystathionine gamma-synthase activity
BJD09_00305	COG0460	homoserine dehydrogenase
BJD09_00305	COG0527	aspartate kinase activity
BJD09_00320	COG1760	l-serine dehydratase
BJD09_00340	COG2353	YceI-like domain
BJD09_00345	COG0784	Response regulator, receiver
BJD09_00345	COG2198	Histidine kinase
BJD09_00345	COG2205	protein histidine kinase activity
BJD09_00370	COG2814	Major facilitator Superfamily
BJD09_00445	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
BJD09_00455	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
BJD09_00460	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
BJD09_00465	COG0259	pyridoxamine-phosphate oxidase activity
BJD09_00475	COG1842	Phage shock protein A
BJD09_00500	COG0754	glutathionylspermidine amidase activity
BJD09_00510	COG2814	Major facilitator Superfamily
BJD09_00555	COG1234	tRNA 3'-trailer cleavage
BJD09_00590	COG0531	amino acid
BJD09_00595	COG2197	response regulator
BJD09_00625	COG1113	amino acid transport
BJD09_00635	COG1271	oxidase subunit
BJD09_00640	COG1294	oxidase, subunit
BJD09_00655	COG2239	Acts as a magnesium transporter
BJD09_00660	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BJD09_00665	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD09_00675	COG1660	Displays ATPase and GTPase activities
BJD09_00680	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
BJD09_00685	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD09_00700	COG1137	ATPase activity
BJD09_00705	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
BJD09_00715	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
BJD09_00725	COG0271	Belongs to the BolA IbaG family
BJD09_00730	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
BJD09_00750	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BJD09_00760	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
BJD09_00770	COG0628	permease
BJD09_00780	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
BJD09_00785	COG3178	'Phosphotransferase
BJD09_00795	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BJD09_00800	COG1555	photosystem II stabilization
BJD09_00815	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BJD09_00820	COG1477	protein flavinylation
BJD09_00845	COG3128	pkhd-type hydroxylase
BJD09_00850	COG4774	siderophore transport
BJD09_00865	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BJD09_00870	COG0719	Fe-S assembly protein
BJD09_00875	COG0396	ATPase activity
BJD09_00880	COG0719	Fe-S assembly protein
BJD09_00885	COG1959	2 iron, 2 sulfur cluster binding
BJD09_00895	COG0693	protein deglycase activity
BJD09_00915	COG0739	heme binding
BJD09_00930	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
BJD09_00945	COG5297	Belongs to the glycosyl hydrolase family 6
BJD09_00955	COG0519	Catalyzes the synthesis of GMP from XMP
BJD09_00965	COG1678	Uncharacterized ACR, COG1678
BJD09_00970	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
BJD09_00975	COG0540	Belongs to the ATCase OTCase family
BJD09_00980	COG1764	response to oxidative stress
BJD09_00990	COG0384	phenazine biosynthesis protein PhzF
BJD09_00995	COG0384	phenazine biosynthesis protein PhzF
BJD09_01000	COG0527	aspartate kinase activity
BJD09_01015	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
BJD09_01030	COG0142	geranyltranstransferase activity
BJD09_01035	COG0629	single-stranded DNA binding
BJD09_01040	COG4251	negative regulation of phosphorylation
BJD09_01040	COG5001	Diguanylate cyclase
BJD09_01040	COG2203	Gaf domain
BJD09_01040	COG3706	GGDEF domain
BJD09_01050	COG2080	2 iron, 2 sulfur cluster binding
BJD09_01055	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
BJD09_01060	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BJD09_01105	COG2879	small protein
BJD09_01110	COG1966	Carbon starvation protein
BJD09_01115	COG1741	Belongs to the pirin family
BJD09_01130	COG1741	Belongs to the pirin family
BJD09_01140	COG1515	deoxyribonuclease V activity
BJD09_01145	COG0588	phosphoglycerate mutase activity
BJD09_01155	COG3590	peptidase
BJD09_01160	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD09_01165	COG2201	protein-glutamate methylesterase activity
BJD09_01170	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BJD09_01175	COG2202	Pas domain
BJD09_01175	COG2200	EAL domain
BJD09_01175	COG2199	diguanylate cyclase activity
BJD09_01180	COG0835	chemotaxis
BJD09_01185	COG0840	transmembrane signaling receptor activity
BJD09_01195	COG0643	Histidine kinase
BJD09_01195	COG2198	Histidine kinase
BJD09_01230	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BJD09_01240	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
BJD09_01245	COG0745	RESPONSE REGULATOR receiver
BJD09_01250	COG2205	protein histidine kinase activity
BJD09_01260	COG4452	Inner membrane protein CreD
BJD09_01285	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD09_01290	COG0735	belongs to the Fur family
BJD09_01310	COG1538	Outer membrane efflux protein
BJD09_01315	COG1309	transcriptional regulator
BJD09_01325	COG2207	Transcriptional regulator
BJD09_01335	COG0583	DNA-binding transcription factor activity
BJD09_01340	COG2814	Major facilitator Superfamily
BJD09_01350	COG0667	Aldo Keto reductase
BJD09_01475	COG5002	protein histidine kinase activity
BJD09_01475	COG5001	Diguanylate cyclase
BJD09_01480	COG1187	pseudouridine synthase activity
BJD09_01485	COG3706	GGDEF domain
BJD09_01485	COG0745	RESPONSE REGULATOR receiver
BJD09_01505	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BJD09_01510	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
BJD09_01515	COG0475	glutathione-regulated potassium exporter activity
BJD09_01520	COG5000	phosphorelay sensor kinase activity
BJD09_01520	COG5002	protein histidine kinase activity
BJD09_01525	COG0745	RESPONSE REGULATOR receiver
BJD09_01530	COG1538	Outer membrane efflux protein
BJD09_01560	COG1132	(ABC) transporter
BJD09_01600	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BJD09_01605	COG2155	Conserved Protein
BJD09_01635	COG3118	belongs to the thioredoxin family
BJD09_01645	COG0495	leucyl-tRNA aminoacylation
BJD09_01660	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
BJD09_01675	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
BJD09_01690	COG2968	Membrane
BJD09_01695	COG0424	maF-like protein
BJD09_01700	COG1530	ribonuclease E activity
BJD09_01705	COG3164	Protein of unknown function
BJD09_01715	COG0312	modulator of DNA gyrase
BJD09_01720	COG3028	Belongs to the UPF0307 family
BJD09_01725	COG0312	modulator of DNA gyrase
BJD09_01735	COG4104	PAAR repeat-containing protein
BJD09_01740	COG0142	geranyltranstransferase activity
BJD09_01745	COG1722	exodeoxyribonuclease VII activity
BJD09_01750	COG0037	tRNA processing
BJD09_01760	COG1785	Belongs to the alkaline phosphatase family
BJD09_01770	COG4106	trans-aconitate 2-methyltransferase activity
BJD09_01780	COG0791	NLP P60 protein
BJD09_01785	COG0791	NLP P60 protein
BJD09_01790	COG1047	Peptidyl-prolyl cis-trans
BJD09_01795	COG2311	Membrane
BJD09_01800	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD09_01805	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BJD09_01825	COG3590	peptidase
BJD09_01835	COG3590	peptidase
BJD09_01855	COG0489	protein tyrosine kinase activity
BJD09_01865	COG0717	Belongs to the dCTP deaminase family
BJD09_01890	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BJD09_01895	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD09_01915	COG0494	nUDIX hydrolase
BJD09_01920	COG0433	COG0433 Predicted ATPase
BJD09_01935	COG0688	phosphatidylethanolamine metabolic process
BJD09_01945	COG2890	protein-(glutamine-N5) methyltransferase activity
BJD09_01950	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
BJD09_01955	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BJD09_01960	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BJD09_01980	COG0101	tRNA pseudouridine synthase activity
BJD09_01985	COG0135	phosphoribosylanthranilate isomerase activity
BJD09_01995	COG0133	tryptophan synthase activity
BJD09_02005	COG0159	tryptophan synthase activity
BJD09_02010	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
BJD09_02015	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BJD09_02045	COG0300	oxidoreductase activity
BJD09_02050	COG0149	triose-phosphate isomerase activity
BJD09_02065	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD09_02070	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD09_02075	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD09_02080	COG0649	NAD binding
BJD09_02085	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
BJD09_02090	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
BJD09_02100	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
BJD09_02105	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD09_02115	COG0713	ATP synthesis coupled electron transport
BJD09_02130	COG1007	ATP synthesis coupled electron transport
BJD09_02140	COG0779	Required for maturation of 30S ribosomal subunits
BJD09_02145	COG0195	Participates in both transcription termination and antitermination
BJD09_02150	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
BJD09_02155	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
BJD09_02160	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BJD09_02165	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
BJD09_02170	COG1185	polyribonucleotide nucleotidyltransferase activity
BJD09_02200	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BJD09_02205	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BJD09_02215	COG2095	MarC family integral membrane protein
BJD09_02230	COG1611	Belongs to the LOG family
BJD09_02235	COG3275	phosphorelay sensor kinase activity
BJD09_02335	COG3179	chitinase
BJD09_02380	COG4695	Portal protein
BJD09_02495	COG0556	nucleotide-excision repair
BJD09_02510	COG3505	Type IV secretory pathway VirD4
BJD09_02530	COG2948	multi-organism process
BJD09_02550	COG3702	type iv secretory pathway
BJD09_02610	COG2963	transposase activity
BJD09_02615	COG0366	Alpha amylase catalytic
BJD09_02640	COG1082	Xylose isomerase domain protein TIM barrel
BJD09_02665	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
BJD09_02670	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
BJD09_02675	COG0291	Belongs to the bacterial ribosomal protein bL35 family
BJD09_02680	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
BJD09_02685	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BJD09_02690	COG0072	phenylalanine-tRNA ligase activity
BJD09_02690	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD09_02695	COG0776	regulation of translation
BJD09_02740	COG0438	transferase activity, transferring glycosyl groups
BJD09_02745	COG0438	transferase activity, transferring glycosyl groups
BJD09_02780	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD09_02785	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD09_02790	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BJD09_02810	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
BJD09_02820	COG1960	acyl-CoA dehydrogenase activity
BJD09_02835	COG3040	lipid binding
BJD09_02850	COG0322	excinuclease ABC activity
BJD09_02865	COG0784	Response regulator, receiver
BJD09_02865	COG4191	Histidine kinase
BJD09_02870	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
BJD09_02875	COG1194	a g-specific adenine glycosylase
BJD09_02885	COG0552	protein localization to endoplasmic reticulum
BJD09_02895	COG3938	Belongs to the proline racemase family
BJD09_02900	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD09_02915	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BJD09_02925	COG0006	proline dipeptidase activity
BJD09_02940	COG0531	amino acid
BJD09_03020	COG0326	Molecular chaperone. Has ATPase activity
BJD09_03025	COG0742	ribosomal rna small subunit methyltransferase
BJD09_03030	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
BJD09_03045	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BJD09_03050	COG0405	Gamma-glutamyltransferase
BJD09_03055	COG3291	Pkd domain containing protein
BJD09_03060	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
BJD09_03095	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
BJD09_03100	COG0343	queuine tRNA-ribosyltransferase activity
BJD09_03105	COG1862	Preprotein translocase
BJD09_03115	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BJD09_03160	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD09_03160	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD09_03165	COG1105	Belongs to the carbohydrate kinase PfkB family
BJD09_03170	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD09_03170	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BJD09_03175	COG1609	Transcriptional regulator
BJD09_03180	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD09_03185	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD09_03195	COG2902	Dehydrogenase
BJD09_03205	COG0477	Major facilitator Superfamily
BJD09_03215	COG2205	protein histidine kinase activity
BJD09_03215	COG0784	Response regulator, receiver
BJD09_03215	COG5002	protein histidine kinase activity
BJD09_03220	COG2733	membrane
BJD09_03250	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
BJD09_03255	COG0243	molybdopterin cofactor binding
BJD09_03265	COG0477	Major facilitator Superfamily
BJD09_03270	COG2703	oxygen carrier activity
BJD09_03275	COG0745	RESPONSE REGULATOR receiver
BJD09_03275	COG3706	GGDEF domain
BJD09_03280	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD09_03285	COG0174	glutamine synthetase
BJD09_03290	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BJD09_03305	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
BJD09_03325	COG3842	ATPase activity
BJD09_03330	COG1176	ABC-type spermidine putrescine transport system, permease component I
BJD09_03335	COG1177	transmembrane transport
BJD09_03340	COG1012	belongs to the aldehyde dehydrogenase family
BJD09_03355	COG4535	Mg2 and Co2 transporter CorC
BJD09_03365	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
BJD09_03375	COG1702	phosphate starvation-inducible protein PhoH
BJD09_03380	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BJD09_03395	COG0741	lytic transglycosylase activity
BJD09_03405	COG0723	plastoquinol--plastocyanin reductase activity
BJD09_03410	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BJD09_03415	COG2857	Cytochrome c1
BJD09_03420	COG0625	glutathione transferase activity
BJD09_03425	COG2969	positive regulation of protein catabolic process
BJD09_03445	COG1201	RNA secondary structure unwinding
BJD09_03450	COG2094	Belongs to the DNA glycosylase MPG family
BJD09_03455	COG0840	transmembrane signaling receptor activity
BJD09_03460	COG0835	chemotaxis
BJD09_03645	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BJD09_03655	COG1570	exodeoxyribonuclease VII activity
BJD09_03660	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BJD09_03665	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BJD09_03665	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
BJD09_03670	COG0802	atpase or kinase
BJD09_03675	COG0860	N-Acetylmuramoyl-L-alanine amidase
BJD09_03680	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BJD09_03705	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_03710	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD09_03715	COG0501	Belongs to the peptidase M48B family
BJD09_03725	COG2081	HI0933 family
BJD09_03730	COG4681	YaeQ
BJD09_03740	COG0625	glutathione transferase activity
BJD09_03750	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
BJD09_03755	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BJD09_03760	COG0513	Belongs to the DEAD box helicase family
BJD09_03790	COG0483	inositol monophosphate 1-phosphatase activity
BJD09_03805	COG5001	Diguanylate cyclase
BJD09_03805	COG3300	MHYT domain
BJD09_03810	COG1509	lysine 2,3-aminomutase activity
BJD09_03815	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BJD09_03825	COG0402	S-adenosylhomocysteine deaminase activity
BJD09_03830	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BJD09_03860	COG2963	transposase activity
BJD09_03895	COG4302	ethanolamine ammonia-lyase activity
BJD09_03925	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
BJD09_03930	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
BJD09_03935	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BJD09_03945	COG2166	iron-sulfur cluster assembly
BJD09_03950	COG0215	cysteine-tRNA ligase activity
BJD09_03960	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
BJD09_03965	COG0137	argininosuccinate synthase activity
BJD09_03980	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BJD09_03990	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
BJD09_03995	COG0165	Argininosuccinate lyase
BJD09_04010	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
BJD09_04040	COG1294	oxidase, subunit
BJD09_04050	COG4988	ABC transporter
BJD09_04055	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
BJD09_04060	COG1278	Cold shock
BJD09_04065	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD09_04085	COG1138	Cytochrome C-type biogenesis protein
BJD09_04090	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
BJD09_04110	COG4133	protoheme IX ABC transporter activity
BJD09_04115	COG0436	Aminotransferase
BJD09_04135	COG1187	pseudouridine synthase activity
BJD09_04140	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
BJD09_04145	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
BJD09_04150	COG2350	Protein conserved in bacteria
BJD09_04180	COG1175	transmembrane transport
BJD09_04185	COG0395	ABC-type sugar transport system, permease component
BJD09_04210	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BJD09_04215	COG2957	Belongs to the agmatine deiminase family
BJD09_04230	COG0257	Belongs to the bacterial ribosomal protein bL36 family
BJD09_04235	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
BJD09_04240	COG0539	negative regulation of cytoplasmic translation
BJD09_04245	COG0776	regulation of translation
BJD09_04255	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
BJD09_04260	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BJD09_04270	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BJD09_04275	COG0475	glutathione-regulated potassium exporter activity
BJD09_04275	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BJD09_04285	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
BJD09_04295	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BJD09_04295	COG0519	Catalyzes the synthesis of GMP from XMP
BJD09_04300	COG0582	viral genome integration into host DNA
BJD09_04335	COG2003	Belongs to the UPF0758 family
BJD09_04355	COG2084	Dehydrogenase
BJD09_04435	COG0210	DNA helicase
BJD09_04585	COG2207	Transcriptional regulator
BJD09_04590	COG2807	transmembrane transport
BJD09_04600	COG0655	NAD(P)H dehydrogenase (quinone) activity
BJD09_04605	COG3938	Belongs to the proline racemase family
BJD09_04615	COG2249	NAD(P)H dehydrogenase (quinone) activity
BJD09_04630	COG5006	permease, DMT superfamily
BJD09_04645	COG4804	nuclease activity
BJD09_04695	COG0270	DNA (cytosine-5-)-methyltransferase activity
BJD09_04740	COG1192	Involved in chromosome partitioning
BJD09_04750	COG2274	protein secretion by the type I secretion system
BJD09_04770	COG2273	Hydrolase Family 16
BJD09_04770	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
BJD09_04790	COG4206	TonB-dependent receptor
BJD09_04815	COG2336	PFAM SpoVT AbrB
BJD09_04835	COG4774	siderophore transport
BJD09_04850	COG0582	viral genome integration into host DNA
BJD09_04875	COG2003	Belongs to the UPF0758 family
BJD09_04880	COG5489	Protein of unknown function (DUF736)
BJD09_04885	COG1396	sequence-specific DNA binding
BJD09_04900	COG3002	Belongs to the UPF0753 family
BJD09_04905	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BJD09_04910	COG0583	DNA-binding transcription factor activity
BJD09_04925	COG2197	response regulator
BJD09_04940	COG1335	isochorismatase
BJD09_04955	COG2814	Major facilitator Superfamily
BJD09_04970	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BJD09_04970	COG1648	precorrin-2 dehydrogenase activity
BJD09_04995	COG3685	Protein conserved in bacteria
BJD09_05015	COG5001	Diguanylate cyclase
BJD09_05025	COG4566	intracellular signal transduction
BJD09_05075	COG3279	Response regulator of the LytR AlgR family
BJD09_05110	COG1238	metal cluster binding
BJD09_05195	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_05250	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
BJD09_05250	COG0316	Belongs to the HesB IscA family
BJD09_05255	COG2154	pterin-4-alpha-carbinolamine dehydratase
BJD09_05265	COG0428	transporter
BJD09_05270	COG3064	Membrane
BJD09_05280	COG1530	ribonuclease E activity
BJD09_05310	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
BJD09_05320	COG0582	viral genome integration into host DNA
BJD09_05330	COG2801	Transposase and inactivated derivatives
BJD09_05355	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BJD09_05360	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BJD09_05380	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BJD09_05385	COG0322	excinuclease ABC activity
BJD09_05395	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BJD09_05400	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
BJD09_05405	COG1663	tetraacyldisaccharide 4'-kinase activity
BJD09_05410	COG1132	(ABC) transporter
BJD09_05420	COG0811	peptide transport
BJD09_05435	COG1136	(ABC) transporter
BJD09_05440	COG4591	ABC-type transport system involved in lipoprotein release permease component
BJD09_05450	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
BJD09_05455	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BJD09_05470	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
BJD09_05495	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BJD09_05500	COG0837	glucose binding
BJD09_05505	COG0363	glucosamine-6-phosphate deaminase activity
BJD09_05510	COG0129	dihydroxy-acid dehydratase activity
BJD09_05515	COG0800	Aldolase
BJD09_05595	COG0784	Response regulator, receiver
BJD09_05595	COG2205	protein histidine kinase activity
BJD09_05600	COG2183	response to ionizing radiation
BJD09_05610	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD09_05610	COG0723	plastoquinol--plastocyanin reductase activity
BJD09_05625	COG3243	poly(R)-hydroxyalkanoic acid synthase
BJD09_05635	COG1183	phosphatidylcholine synthase activity
BJD09_05640	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_05655	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
BJD09_05665	COG0668	transmembrane transport
BJD09_05670	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
BJD09_05675	COG0590	tRNA wobble adenosine to inosine editing
BJD09_05680	COG1321	iron dependent repressor
BJD09_05685	COG1914	H( )-stimulated, divalent metal cation uptake system
BJD09_05700	COG0746	molybdenum cofactor guanylyltransferase activity
BJD09_05705	COG0303	'Molybdopterin
BJD09_05715	COG0708	Exodeoxyribonuclease III
BJD09_05755	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BJD09_05760	COG0303	'Molybdopterin
BJD09_05765	COG1160	GTP binding
BJD09_05770	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD09_05780	COG1426	Protein conserved in bacteria
BJD09_05790	COG0820	rRNA (adenine-C2-)-methyltransferase activity
BJD09_05795	COG0105	UTP biosynthetic process
BJD09_05805	COG1250	3-hydroxyacyl-CoA dehydrogenase
BJD09_05805	COG1024	Enoyl-CoA hydratase
BJD09_05810	COG0183	Belongs to the thiolase family
BJD09_05820	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BJD09_05825	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BJD09_05835	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
BJD09_05845	COG1674	ftsk spoiiie
BJD09_05850	COG0492	ferredoxin-NADP+ reductase activity
BJD09_05860	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
BJD09_05865	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BJD09_05870	COG0542	response to heat
BJD09_05875	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
BJD09_05885	COG0482	sulfurtransferase activity
BJD09_05890	COG2915	High frequency lysogenization protein hflD homolog
BJD09_05920	COG5002	protein histidine kinase activity
BJD09_05940	COG0784	Response regulator, receiver
BJD09_05940	COG0835	chemotaxis
BJD09_05950	COG1558	bacterial-type flagellum-dependent cell motility
BJD09_05955	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
BJD09_05960	COG1749	Flagellar hook protein flgE
BJD09_05965	COG4787	bacterial-type flagellum-dependent cell motility
BJD09_05975	COG4786	Flagellar basal body rod
BJD09_05980	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
BJD09_05985	COG1706	bacterial-type flagellum-dependent cell motility
BJD09_05990	COG1705	Flagellar rod assembly protein muramidase FlgJ
BJD09_05990	COG3951	Flagellar rod assembly protein muramidase FlgJ
BJD09_06000	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD09_06005	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD09_06010	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
BJD09_06040	COG2201	protein-glutamate methylesterase activity
BJD09_06045	COG2204	response regulator
BJD09_06060	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD09_06065	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_06070	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_06100	COG1677	Flagellar hook-basal body complex protein FliE
BJD09_06150	COG3190	flagellar
BJD09_06165	COG1987	bacterial-type flagellum assembly
BJD09_06170	COG1684	flagellar biosynthetic protein fliR
BJD09_06175	COG5001	Diguanylate cyclase
BJD09_06175	COG3300	MHYT domain
BJD09_06185	COG5001	Diguanylate cyclase
BJD09_06185	COG3300	MHYT domain
BJD09_06200	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BJD09_06210	COG0455	bacterial-type flagellum organization
BJD09_06230	COG2198	Histidine kinase
BJD09_06230	COG0643	Histidine kinase
BJD09_06250	COG0641	radical SAM
BJD09_06285	COG2801	Transposase and inactivated derivatives
BJD09_06290	COG3002	Belongs to the UPF0753 family
BJD09_06365	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
BJD09_06370	COG1360	Flagellar Motor Protein
BJD09_06375	COG1192	Involved in chromosome partitioning
BJD09_06380	COG0835	chemotaxis
BJD09_06390	COG0745	RESPONSE REGULATOR receiver
BJD09_06395	COG2198	Histidine kinase
BJD09_06395	COG0643	Histidine kinase
BJD09_06400	COG0840	transmembrane signaling receptor activity
BJD09_06410	COG0840	transmembrane signaling receptor activity
BJD09_06415	COG0840	transmembrane signaling receptor activity
BJD09_06430	COG0840	transmembrane signaling receptor activity
BJD09_06435	COG0840	transmembrane signaling receptor activity
BJD09_06440	COG0840	transmembrane signaling receptor activity
BJD09_06445	COG0840	transmembrane signaling receptor activity
BJD09_06455	COG0840	transmembrane signaling receptor activity
BJD09_06460	COG0840	transmembrane signaling receptor activity
BJD09_06465	COG0840	transmembrane signaling receptor activity
BJD09_06470	COG0840	transmembrane signaling receptor activity
BJD09_06475	COG0840	transmembrane signaling receptor activity
BJD09_06500	COG0840	transmembrane signaling receptor activity
BJD09_06510	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
BJD09_06515	COG2201	protein-glutamate methylesterase activity
BJD09_06525	COG2267	carboxylic ester hydrolase activity
BJD09_06555	COG0318	PFAM AMP-dependent synthetase and ligase
BJD09_06560	COG1024	Enoyl-CoA hydratase
BJD09_06565	COG2205	protein histidine kinase activity
BJD09_06565	COG2198	Histidine kinase
BJD09_06565	COG0784	Response regulator, receiver
BJD09_06575	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
BJD09_06580	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BJD09_06585	COG3279	Response regulator of the LytR AlgR family
BJD09_06625	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BJD09_06635	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD09_06640	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BJD09_06650	COG0505	Belongs to the CarA family
BJD09_06655	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
BJD09_06660	COG2258	MOSC domain
BJD09_06665	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BJD09_06710	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BJD09_06730	COG0277	FAD linked oxidase domain protein
BJD09_06735	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BJD09_06745	COG0531	amino acid
BJD09_06750	COG0531	amino acid
BJD09_06755	COG0235	Class ii aldolase
BJD09_06760	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
BJD09_06765	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
BJD09_06780	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
BJD09_06780	COG0140	phosphoribosyl-ATP diphosphatase activity
BJD09_06785	COG0107	imidazoleglycerol-phosphate synthase activity
BJD09_06790	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
BJD09_06795	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BJD09_06800	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
BJD09_06800	COG0131	Imidazoleglycerol-phosphate dehydratase
BJD09_06805	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD09_06810	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
BJD09_06815	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
BJD09_06825	COG0124	histidyl-tRNA synthetase
BJD09_06830	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD09_06880	COG3210	domain, Protein
BJD09_06890	COG3210	domain, Protein
BJD09_06905	COG1649	PFAM Uncharacterised BCR, COG1649
BJD09_06905	COG0726	polysaccharide deacetylase
BJD09_06910	COG1215	transferase activity, transferring glycosyl groups
BJD09_06925	COG1012	belongs to the aldehyde dehydrogenase family
BJD09_06945	COG0167	dihydroorotate dehydrogenase activity
BJD09_06950	COG0812	UDP-N-acetylmuramate dehydrogenase activity
BJD09_06955	COG0697	spore germination
BJD09_06960	COG1794	racemase activity, acting on amino acids and derivatives
BJD09_06975	COG0671	phosphoesterase, PA-phosphatase related
BJD09_06980	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
BJD09_06995	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
BJD09_07000	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD09_07010	COG5001	Diguanylate cyclase
BJD09_07010	COG3706	GGDEF domain
BJD09_07010	COG4251	negative regulation of phosphorylation
BJD09_07010	COG2203	Gaf domain
BJD09_07025	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD09_07050	COG0166	Belongs to the GPI family
BJD09_07055	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
BJD09_07060	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
BJD09_07065	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
BJD09_07085	COG1469	GTP cyclohydrolase I activity
BJD09_07090	COG0860	N-Acetylmuramoyl-L-alanine amidase
BJD09_07110	COG0477	Major facilitator Superfamily
BJD09_07115	COG2115	Belongs to the xylose isomerase family
BJD09_07120	COG1070	Carbohydrate kinase
BJD09_07130	COG1501	Belongs to the glycosyl hydrolase 31 family
BJD09_07170	COG0800	Aldolase
BJD09_07175	COG4948	Mandelate Racemase Muconate Lactonizing
BJD09_07185	COG3734	2-keto-3-deoxy-galactonokinase
BJD09_07190	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
BJD09_07200	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BJD09_07215	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BJD09_07220	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
BJD09_07235	COG0352	thiamine-phosphate diphosphorylase activity
BJD09_07235	COG0351	phosphomethylpyrimidine kinase
BJD09_07260	COG0583	DNA-binding transcription factor activity
BJD09_07265	COG1741	Belongs to the pirin family
BJD09_07285	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
BJD09_07290	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BJD09_07295	COG2137	regulation of response to DNA damage stimulus
BJD09_07305	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
BJD09_07310	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BJD09_07320	COG1546	Belongs to the CinA family
BJD09_07325	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BJD09_07330	COG1923	regulation of RNA biosynthetic process
BJD09_07335	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
BJD09_07340	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
BJD09_07345	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BJD09_07350	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
BJD09_07355	COG1534	Rna-binding protein
BJD09_07370	COG1238	metal cluster binding
BJD09_07375	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BJD09_07380	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
BJD09_07385	COG2840	Smr protein MutS2
BJD09_07390	COG0585	pseudouridine synthase activity
BJD09_07395	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
BJD09_07400	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
BJD09_07405	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
BJD09_07410	COG0148	phosphopyruvate hydratase activity
BJD09_07420	COG2877	3-deoxy-8-phosphooctulonate synthase activity
BJD09_07425	COG0504	CTP synthase activity
BJD09_07450	COG0306	phosphate transporter
BJD09_07465	COG1253	flavin adenine dinucleotide binding
BJD09_07480	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BJD09_07485	COG0477	Major facilitator Superfamily
BJD09_07495	COG1136	(ABC) transporter
BJD09_07510	COG0438	transferase activity, transferring glycosyl groups
BJD09_07520	COG2264	protein methyltransferase activity
BJD09_07555	COG2244	polysaccharide biosynthetic process
BJD09_07610	COG1595	DNA-templated transcription, initiation
BJD09_07625	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BJD09_07635	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
BJD09_07645	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD09_07660	COG0784	Response regulator, receiver
BJD09_07660	COG4191	Histidine kinase
BJD09_07665	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
BJD09_07675	COG0745	RESPONSE REGULATOR receiver
BJD09_07700	COG0840	transmembrane signaling receptor activity
BJD09_07760	COG0583	DNA-binding transcription factor activity
BJD09_07765	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BJD09_07770	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
BJD09_07785	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
BJD09_07790	COG1605	Chorismate mutase
BJD09_07790	COG0077	Prephenate dehydratase
BJD09_07795	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
BJD09_07800	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
BJD09_07805	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
BJD09_07850	COG1228	amidohydrolase
BJD09_07855	COG2986	histidine ammonia-lyase
BJD09_07865	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
BJD09_07880	COG4993	Dehydrogenase
BJD09_07890	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
BJD09_07905	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
BJD09_07910	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
BJD09_07915	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD09_07925	COG3115	cell septum assembly
BJD09_07935	COG0359	binds to the 23S rRNA
BJD09_07940	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
BJD09_07945	COG0360	Binds together with S18 to 16S ribosomal RNA
BJD09_07950	COG0316	Belongs to the HesB IscA family
BJD09_07960	COG0017	Asparaginyl-tRNA synthetase
BJD09_07980	COG2808	Putative FMN-binding domain
BJD09_08045	COG0288	reversible hydration of carbon dioxide
BJD09_08050	COG0662	Cupin 2, conserved barrel domain protein
BJD09_08060	COG3844	kynureninase activity
BJD09_08065	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD09_08075	COG2925	Exonuclease
BJD09_08100	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BJD09_08105	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BJD09_08105	COG0116	Belongs to the methyltransferase superfamily
BJD09_08150	COG0494	nUDIX hydrolase
BJD09_08160	COG1024	Enoyl-CoA hydratase
BJD09_08170	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BJD09_08175	COG0659	secondary active sulfate transmembrane transporter activity
BJD09_08200	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BJD09_08205	COG0573	inorganic phosphate transmembrane transporter activity
BJD09_08210	COG0581	inorganic phosphate transmembrane transporter activity
BJD09_08215	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BJD09_08220	COG0704	Plays a role in the regulation of phosphate uptake
BJD09_08230	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BJD09_08235	COG3706	GGDEF domain
BJD09_08240	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BJD09_08250	COG0557	exoribonuclease II activity
BJD09_08270	COG1960	acyl-CoA dehydrogenase activity
BJD09_08275	COG1960	acyl-CoA dehydrogenase activity
BJD09_08280	COG1960	acyl-CoA dehydrogenase activity
BJD09_08285	COG1960	acyl-CoA dehydrogenase activity
BJD09_08295	COG0646	methionine synthase
BJD09_08295	COG1410	methionine synthase
BJD09_08300	COG1410	methionine synthase
BJD09_08300	COG0646	methionine synthase
BJD09_08310	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD09_08335	COG2900	Belongs to the SlyX family
BJD09_08350	COG0386	Belongs to the glutathione peroxidase family
BJD09_08360	COG1725	Transcriptional regulator
BJD09_08365	COG1131	(ABC) transporter
BJD09_08395	COG1253	flavin adenine dinucleotide binding
BJD09_08415	COG2850	peptidyl-arginine hydroxylation
BJD09_08450	COG1132	(ABC) transporter
BJD09_08455	COG0583	DNA-binding transcription factor activity
BJD09_08485	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
BJD09_08495	COG0484	heat shock protein binding
BJD09_08500	COG0443	Heat shock 70 kDa protein
BJD09_08505	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BJD09_08510	COG1420	regulation of RNA biosynthetic process
BJD09_08515	COG0497	DNA recombination
BJD09_08525	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD09_08540	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
BJD09_08665	COG3706	GGDEF domain
BJD09_08675	COG3706	GGDEF domain
BJD09_08710	COG0583	DNA-binding transcription factor activity
BJD09_08735	COG0415	Belongs to the DNA photolyase family
BJD09_08740	COG0305	Participates in initiation and elongation during chromosome replication
BJD09_08750	COG0367	asparagine synthase
BJD09_08770	COG1960	acyl-CoA dehydrogenase activity
BJD09_08790	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BJD09_08845	COG0386	Belongs to the glutathione peroxidase family
BJD09_08855	COG0339	signal peptide processing
BJD09_08885	COG3104	oligopeptide transport
BJD09_08905	COG2814	Major facilitator Superfamily
BJD09_08910	COG1566	PFAM secretion protein HlyD family protein
BJD09_08940	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BJD09_08960	COG4774	siderophore transport
BJD09_08970	COG0367	asparagine synthase
BJD09_08975	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BJD09_08980	COG1393	Belongs to the ArsC family
BJD09_08990	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
BJD09_08995	COG0024	Methionine aminopeptidase
BJD09_09030	COG0052	Belongs to the universal ribosomal protein uS2 family
BJD09_09035	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
BJD09_09040	COG0745	RESPONSE REGULATOR receiver
BJD09_09040	COG3706	GGDEF domain
BJD09_09045	COG0528	UMP kinase activity
BJD09_09050	COG0233	cytoplasmic translational termination
BJD09_09055	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
BJD09_09060	COG0575	Belongs to the CDS family
BJD09_09065	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
BJD09_09070	COG0750	zinc metalloprotease
BJD09_09085	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD09_09090	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BJD09_09095	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD09_09100	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD09_09105	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
BJD09_09115	COG0825	malonyl-CoA metabolic process
BJD09_09150	COG1695	Transcriptional regulator
BJD09_09170	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
BJD09_09180	COG2040	homocysteine
BJD09_09185	COG0833	amino acid
BJD09_09190	COG0346	lactoylglutathione lyase activity
BJD09_09195	COG1131	(ABC) transporter
BJD09_09210	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD09_09210	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD09_09220	COG2878	Part of a membrane complex involved in electron transport
BJD09_09240	COG1595	DNA-templated transcription, initiation
BJD09_09265	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BJD09_09280	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BJD09_09285	COG0251	oxidation-reduction process
BJD09_09330	COG2814	Major facilitator Superfamily
BJD09_09335	COG1902	pentaerythritol trinitrate reductase activity
BJD09_09345	COG2824	Alkylphosphonate utilization operon protein PhnA
BJD09_09355	COG1047	Peptidyl-prolyl cis-trans
BJD09_09360	COG1077	Cell shape determining protein MreB Mrl
BJD09_09375	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BJD09_09385	COG5487	UPF0391 membrane protein
BJD09_09390	COG1451	nucleotide metabolic process
BJD09_09415	COG0183	Belongs to the thiolase family
BJD09_09435	COG3706	GGDEF domain
BJD09_09435	COG0745	RESPONSE REGULATOR receiver
BJD09_09450	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
BJD09_09450	COG1793	dna ligase
BJD09_09460	COG1793	dna ligase
BJD09_09465	COG1201	RNA secondary structure unwinding
BJD09_09475	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD09_09480	COG1278	Cold shock
BJD09_09485	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
BJD09_09495	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD09_09500	COG3046	protein related to deoxyribodipyrimidine photolyase
BJD09_09505	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
BJD09_09510	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
BJD09_09520	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BJD09_09530	COG1381	Involved in DNA repair and RecF pathway recombination
BJD09_09535	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
BJD09_09540	COG0571	ribonuclease III activity
BJD09_09555	COG0481	GTPase activity
BJD09_09560	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BJD09_09575	COG1024	Enoyl-CoA hydratase
BJD09_09575	COG1250	3-hydroxyacyl-CoA dehydrogenase
BJD09_09595	COG1024	Enoyl-CoA hydratase
BJD09_09600	COG1960	acyl-CoA dehydrogenase activity
BJD09_09620	COG3867	Arabinogalactan endo-beta-1,4-galactanase
BJD09_09625	COG3250	beta-galactosidase activity
BJD09_09650	COG3209	COG3209 Rhs family protein
BJD09_09670	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
BJD09_09680	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
BJD09_09700	COG0534	Mate efflux family protein
BJD09_09705	COG0534	Mate efflux family protein
BJD09_09710	COG0335	large ribosomal subunit rRNA binding
BJD09_09715	COG0336	Belongs to the RNA methyltransferase TrmD family
BJD09_09720	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
BJD09_09725	COG0228	four-way junction DNA binding
BJD09_09730	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BJD09_09740	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BJD09_09745	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BJD09_09770	COG4191	Histidine kinase
BJD09_09770	COG0784	Response regulator, receiver
BJD09_09775	COG2205	protein histidine kinase activity
BJD09_09775	COG4999	Histidine kinase
BJD09_09775	COG3850	Histidine kinase
BJD09_09775	COG3437	response regulator, receiver
BJD09_09780	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BJD09_09790	COG2205	protein histidine kinase activity
BJD09_09795	COG5507	3-demethylubiquinone-9 3-methyltransferase
BJD09_09805	COG4771	TonB-dependent receptor
BJD09_09830	COG2172	sigma factor antagonist activity
BJD09_09835	COG1366	Belongs to the anti-sigma-factor antagonist family
BJD09_09840	COG1366	Belongs to the anti-sigma-factor antagonist family
BJD09_09855	COG0326	Molecular chaperone. Has ATPase activity
BJD09_09860	COG2207	Transcriptional regulator
BJD09_09870	COG3152	Membrane
BJD09_09885	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BJD09_09890	COG1845	cytochrome c oxidase, subunit III
BJD09_09895	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BJD09_09910	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
BJD09_09915	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
BJD09_09920	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BJD09_09925	COG0196	riboflavin kinase activity
BJD09_09935	COG0268	Binds directly to 16S ribosomal RNA
BJD09_09940	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
BJD09_09945	COG0211	Belongs to the bacterial ribosomal protein bL27 family
BJD09_09950	COG0261	This protein binds to 23S rRNA in the presence of protein L20
BJD09_09955	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
BJD09_09960	COG0824	Thioesterase
BJD09_09975	COG1946	Acyl-CoA thioesterase
BJD09_09995	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
BJD09_10005	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
BJD09_10035	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
BJD09_10050	COG2197	response regulator
BJD09_10055	COG4585	Histidine kinase
BJD09_10070	COG0850	regulation of cytokinetic process
BJD09_10075	COG2894	cell division
BJD09_10080	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
BJD09_10090	COG0642	Histidine kinase
BJD09_10095	COG0745	RESPONSE REGULATOR receiver
BJD09_10110	COG2194	sulfuric ester hydrolase activity
BJD09_10125	COG2814	Major facilitator Superfamily
BJD09_10130	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BJD09_10130	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BJD09_10140	COG0656	L-ascorbic acid biosynthetic process
BJD09_10145	COG0753	catalase activity
BJD09_10160	COG1917	Cupin 2, conserved barrel domain protein
BJD09_10160	COG2207	Transcriptional regulator
BJD09_10180	COG0823	Involved in the tonB-independent uptake of proteins
BJD09_10180	COG1506	peptidase
BJD09_10195	COG1297	OPT oligopeptide transporter protein
BJD09_10215	COG0587	DNA-directed DNA polymerase activity
BJD09_10230	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BJD09_10265	COG2080	2 iron, 2 sulfur cluster binding
BJD09_10270	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
BJD09_10275	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BJD09_10300	COG0492	ferredoxin-NADP+ reductase activity
BJD09_10320	COG3537	Alpha-1,2-mannosidase
BJD09_10330	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_10335	COG3387	PFAM Glycoside hydrolase 15-related
BJD09_10345	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BJD09_10350	COG0406	alpha-ribazole phosphatase activity
BJD09_10350	COG0328	RNA-DNA hybrid ribonuclease activity
BJD09_10380	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
BJD09_10425	COG1309	transcriptional regulator
BJD09_10430	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_10435	COG0308	aminopeptidase N
BJD09_10440	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
BJD09_10455	COG0330	HflC and HflK could
BJD09_10460	COG0330	HflC and HflK could
BJD09_10480	COG0678	peroxiredoxin activity
BJD09_10490	COG4953	penicillin-binding protein 1C
BJD09_10510	COG2373	Large extracellular alpha-helical protein
BJD09_10540	COG3609	addiction module antidote protein, CC2985 family
BJD09_10560	COG3829	transcription factor binding
BJD09_10585	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BJD09_10590	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BJD09_10600	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BJD09_10605	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_10620	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD09_10625	COG0333	Belongs to the bacterial ribosomal protein bL32 family
BJD09_10630	COG1399	metal-binding, possibly nucleic acid-binding protein
BJD09_10635	COG0424	maF-like protein
BJD09_10660	COG0714	Associated with various cellular activities
BJD09_10680	COG0537	adenosine 5'-monophosphoramidase activity
BJD09_10685	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
BJD09_10690	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BJD09_10745	COG0314	molybdopterin synthase activity
BJD09_10750	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
BJD09_10755	COG0315	cyclic pyranopterin monophosphate synthase activity
BJD09_10765	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
BJD09_10770	COG1234	tRNA 3'-trailer cleavage
BJD09_10775	COG3642	lipopolysaccharide core region biosynthetic process
BJD09_10780	COG0859	PFAM glycosyl transferase family 9
BJD09_10795	COG0631	protein serine/threonine phosphatase activity
BJD09_10800	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BJD09_10805	COG0328	RNA-DNA hybrid ribonuclease activity
BJD09_10815	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD09_10825	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BJD09_10850	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
BJD09_10855	COG0740	serine-type endopeptidase activity
BJD09_10860	COG0544	peptidyl-prolyl cis-trans isomerase activity
BJD09_11020	COG0473	3-isopropylmalate dehydrogenase activity
BJD09_11035	COG4783	chaperone-mediated protein folding
BJD09_11050	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
BJD09_11060	COG0438	transferase activity, transferring glycosyl groups
BJD09_11065	COG0671	phosphoesterase, PA-phosphatase related
BJD09_11070	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD09_11080	COG3291	Pkd domain containing protein
BJD09_11090	COG2833	Protein of unknown function (DUF455)
BJD09_11110	COG0285	dihydrofolate synthase activity
BJD09_11115	COG0406	alpha-ribazole phosphatase activity
BJD09_11145	COG1063	alcohol dehydrogenase
BJD09_11155	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
BJD09_11160	COG4208	sulfate ABC transporter
BJD09_11165	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
BJD09_11170	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
BJD09_11175	COG0156	8-amino-7-oxononanoate synthase activity
BJD09_11205	COG0604	alcohol dehydrogenase
BJD09_11210	COG1902	pentaerythritol trinitrate reductase activity
BJD09_11210	COG0446	pyridine nucleotide-disulphide oxidoreductase
BJD09_11225	COG0625	glutathione transferase activity
BJD09_11230	COG0039	L-malate dehydrogenase activity
BJD09_11235	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BJD09_11250	COG0154	amidase activity
BJD09_11260	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
BJD09_11280	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
BJD09_11285	COG0203	ribosomal protein L17
BJD09_11290	COG0202	RNA polymerase activity
BJD09_11295	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
BJD09_11300	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
BJD09_11305	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
BJD09_11310	COG0201	protein transport
BJD09_11315	COG0200	Binds to the 23S rRNA
BJD09_11320	COG1841	ribosomal large subunit assembly
BJD09_11325	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
BJD09_11330	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
BJD09_11335	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
BJD09_11340	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
BJD09_11345	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
BJD09_11350	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
BJD09_11355	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
BJD09_11360	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
BJD09_11365	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
BJD09_11370	COG0255	Belongs to the universal ribosomal protein uL29 family
BJD09_11375	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
BJD09_11380	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
BJD09_11385	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
BJD09_11390	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BJD09_11395	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
BJD09_11400	COG0089	rRNA binding
BJD09_11405	COG0088	Forms part of the polypeptide exit tunnel
BJD09_11410	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
BJD09_11415	COG0051	transcription antitermination factor activity, RNA binding
BJD09_11420	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BJD09_11425	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BJD09_11430	COG0049	tRNA binding
BJD09_11435	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
BJD09_11440	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BJD09_11445	COG0085	RNA polymerase activity
BJD09_11450	COG0222	ribosome binding
BJD09_11455	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
BJD09_11460	COG0081	regulation of translation
BJD09_11465	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
BJD09_11470	COG0250	Participates in transcription elongation, termination and antitermination
BJD09_11475	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BJD09_11485	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BJD09_11505	COG0012	GTP binding
BJD09_11510	COG0193	aminoacyl-tRNA hydrolase activity
BJD09_11515	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
BJD09_11520	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BJD09_11530	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
BJD09_11535	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
BJD09_11550	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
BJD09_11560	COG0521	Mo-molybdopterin cofactor biosynthetic process
BJD09_11580	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD09_11585	COG1295	ribonuclease BN
BJD09_11610	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BJD09_11615	COG1404	Belongs to the peptidase S8 family
BJD09_11620	COG1404	Belongs to the peptidase S8 family
BJD09_11625	COG1404	Belongs to the peptidase S8 family
BJD09_11630	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BJD09_11645	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
BJD09_11650	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BJD09_11700	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BJD09_11700	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BJD09_11720	COG2890	protein-(glutamine-N5) methyltransferase activity
BJD09_11730	COG3634	alkyl hydroperoxide reductase activity
BJD09_11735	COG0583	DNA-binding transcription factor activity
BJD09_11745	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD09_11750	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BJD09_11760	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BJD09_11770	COG2197	response regulator
BJD09_11775	COG2205	protein histidine kinase activity
BJD09_11775	COG0784	Response regulator, receiver
BJD09_11775	COG5002	protein histidine kinase activity
BJD09_11780	COG0745	RESPONSE REGULATOR receiver
BJD09_11780	COG3706	GGDEF domain
BJD09_11795	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD09_11805	COG0697	spore germination
BJD09_11830	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
BJD09_11845	COG3386	PFAM SMP-30 Gluconolaconase
BJD09_11865	COG1024	Enoyl-CoA hydratase
BJD09_11880	COG0583	DNA-binding transcription factor activity
BJD09_11885	COG3384	dioxygenase
BJD09_11915	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD09_11920	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD09_11935	COG2096	Adenosyltransferase
BJD09_11940	COG0123	including yeast histone deacetylase and acetoin utilization protein
BJD09_11955	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
BJD09_11960	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BJD09_11965	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
BJD09_11970	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
BJD09_11975	COG2967	ApaG domain
BJD09_11980	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
BJD09_12000	COG0747	negative chemotaxis
BJD09_12025	COG0431	NADPH-dependent FMN reductase
BJD09_12030	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BJD09_12040	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BJD09_12045	COG1116	anion transmembrane transporter activity
BJD09_12055	COG3829	transcription factor binding
BJD09_12070	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
BJD09_12075	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
BJD09_12095	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
BJD09_12105	COG0642	Histidine kinase
BJD09_12120	COG4181	ATPase activity
BJD09_12130	COG2175	clavaminate synthase activity
BJD09_12140	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
BJD09_12145	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BJD09_12165	COG4771	TonB-dependent receptor
BJD09_12175	COG0667	Aldo Keto reductase
BJD09_12185	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BJD09_12190	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD09_12200	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BJD09_12205	COG4106	trans-aconitate 2-methyltransferase activity
BJD09_12215	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
BJD09_12260	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
BJD09_12275	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
BJD09_12280	COG2226	methyltransferase
BJD09_12315	COG0366	Alpha amylase catalytic
BJD09_12345	COG0604	alcohol dehydrogenase
BJD09_12345	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_12345	COG3321	synthase
BJD09_12360	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BJD09_12370	COG0494	nUDIX hydrolase
BJD09_12375	COG0653	protein targeting
BJD09_12380	COG0739	heme binding
BJD09_12390	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
BJD09_12405	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BJD09_12410	COG1181	Belongs to the D-alanine--D-alanine ligase family
BJD09_12415	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BJD09_12420	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BJD09_12430	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BJD09_12435	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BJD09_12440	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BJD09_12450	COG3116	cell division
BJD09_12455	COG0275	rRNA processing
BJD09_12460	COG2001	Belongs to the MraZ family
BJD09_12490	COG0792	nuclease activity
BJD09_12495	COG1988	membrane-bound metal-dependent
BJD09_12500	COG0277	FAD linked oxidase domain protein
BJD09_12515	COG0745	RESPONSE REGULATOR receiver
BJD09_12520	COG2205	protein histidine kinase activity
BJD09_12525	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
BJD09_12530	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
BJD09_12535	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
BJD09_12560	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
BJD09_12565	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BJD09_12570	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
BJD09_12590	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BJD09_12590	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BJD09_12600	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
BJD09_12605	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BJD09_12615	COG0488	(ABC) transporter
BJD09_12625	COG0697	spore germination
BJD09_12635	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BJD09_12650	COG3791	Glutathione-dependent formaldehyde-activating
BJD09_12675	COG0745	RESPONSE REGULATOR receiver
BJD09_12680	COG2205	protein histidine kinase activity
BJD09_12700	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
BJD09_12705	COG0218	Necessary for normal cell division and for the maintenance of normal septation
BJD09_12720	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BJD09_12735	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BJD09_12740	COG1012	belongs to the aldehyde dehydrogenase family
BJD09_12745	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
BJD09_12750	COG0617	tRNA 3'-terminal CCA addition
BJD09_12760	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BJD09_12765	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BJD09_12770	COG1609	Transcriptional regulator
BJD09_12845	COG1459	type II secretion system
BJD09_12905	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BJD09_12910	COG4191	Histidine kinase
BJD09_12915	COG0784	Response regulator, receiver
BJD09_12920	COG4251	negative regulation of phosphorylation
BJD09_12925	COG2823	Periplasmic or secreted lipoprotein
BJD09_12930	COG0673	inositol 2-dehydrogenase activity
BJD09_12935	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
BJD09_12970	COG1056	cytidyltransferase-related domain
BJD09_12970	COG1051	belongs to the nudix hydrolase family
BJD09_12980	COG0583	DNA-binding transcription factor activity
BJD09_12995	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
BJD09_13000	COG0321	lipoyl(octanoyl) transferase activity
BJD09_13005	COG2921	Belongs to the UPF0250 family
BJD09_13015	COG1686	Belongs to the peptidase S11 family
BJD09_13025	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
BJD09_13030	COG2951	lytic endotransglycosylase activity
BJD09_13040	COG0772	Belongs to the SEDS family
BJD09_13055	COG1792	Involved in formation and maintenance of cell shape
BJD09_13060	COG1077	Cell shape determining protein MreB Mrl
BJD09_13070	COG3284	Transcriptional regulator
BJD09_13120	COG0308	aminopeptidase N
BJD09_13125	COG5001	Diguanylate cyclase
BJD09_13125	COG3300	MHYT domain
BJD09_13130	COG2226	methyltransferase
BJD09_13155	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
BJD09_13160	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
BJD09_13165	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
BJD09_13175	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
BJD09_13185	COG2832	Protein of unknown function (DUF454)
BJD09_13205	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
BJD09_13210	COG1505	serine-type exopeptidase activity
BJD09_13240	COG0181	hydroxymethylbilane synthase activity
BJD09_13250	COG3275	phosphorelay sensor kinase activity
BJD09_13260	COG2943	transferase activity, transferring hexosyl groups
BJD09_13280	COG3706	GGDEF domain
BJD09_13290	COG0659	secondary active sulfate transmembrane transporter activity
BJD09_13295	COG5297	Belongs to the glycosyl hydrolase family 6
BJD09_13295	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD09_13300	COG0840	transmembrane signaling receptor activity
BJD09_13350	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
BJD09_13360	COG0598	Magnesium transport protein CorA
BJD09_13370	COG1113	amino acid transport
BJD09_13385	COG0697	spore germination
BJD09_13410	COG3706	GGDEF domain
BJD09_13425	COG0823	Involved in the tonB-independent uptake of proteins
BJD09_13425	COG1506	peptidase
BJD09_13435	COG2409	Drug exporters of the RND superfamily
BJD09_13460	COG0435	Glutathione S-transferase
BJD09_13470	COG4221	oxidoreductase activity
BJD09_13485	COG4221	oxidoreductase activity
BJD09_13495	COG2801	Transposase and inactivated derivatives
BJD09_13545	COG1802	Transcriptional regulator
BJD09_13555	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
BJD09_13560	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
BJD09_13580	COG3052	prosthetic group binding
BJD09_13610	COG2353	YceI-like domain
BJD09_13615	COG0778	Nitroreductase
BJD09_13635	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
BJD09_13640	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
BJD09_13650	COG3386	PFAM SMP-30 Gluconolaconase
BJD09_13665	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BJD09_13680	COG0459	protein refolding
BJD09_13685	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
BJD09_13695	COG2356	endonuclease I
BJD09_13700	COG0300	oxidoreductase activity
BJD09_13730	COG1324	tolerance protein
BJD09_13740	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
BJD09_13745	COG0511	ligase activity, forming carbon-carbon bonds
BJD09_13755	COG0439	Biotin carboxylase
BJD09_13775	COG2264	protein methyltransferase activity
BJD09_13795	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
BJD09_13800	COG4589	Belongs to the CDS family
BJD09_13825	COG2453	phosphatase
BJD09_13825	COG0671	phosphoesterase, PA-phosphatase related
BJD09_13830	COG2267	carboxylic ester hydrolase activity
BJD09_13835	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BJD09_13840	COG0138	bifunctional purine biosynthesis protein purh
BJD09_13850	COG0151	Belongs to the GarS family
BJD09_13865	COG2814	Major facilitator Superfamily
BJD09_13870	COG0583	DNA-binding transcription factor activity
BJD09_13875	COG2814	Major facilitator Superfamily
BJD09_13895	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
BJD09_13925	COG0316	Belongs to the HesB IscA family
BJD09_13965	COG1051	belongs to the nudix hydrolase family
BJD09_13980	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BJD09_13985	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
BJD09_13990	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
BJD09_14000	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
BJD09_14005	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD09_14015	COG0134	indole-3-glycerol-phosphate synthase activity
BJD09_14020	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BJD09_14045	COG1597	lipid kinase activity
BJD09_14050	COG0456	acetyltransferase
BJD09_14065	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
BJD09_14070	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
BJD09_14090	COG3179	chitinase
BJD09_14115	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BJD09_14115	COG2111	Na H antiporter
BJD09_14120	COG1006	Multisubunit Na H antiporter MnhC subunit
BJD09_14125	COG0651	ATP synthesis coupled electron transport
BJD09_14135	COG2212	antiporter activity
BJD09_14140	COG1320	monovalent cation:proton antiporter activity
BJD09_14160	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
BJD09_14190	COG3483	tryptophan 2,3-dioxygenase activity
BJD09_14200	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BJD09_14220	COG0513	Belongs to the DEAD box helicase family
BJD09_14230	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_14235	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD09_14270	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_14275	COG0702	epimerase
BJD09_14300	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BJD09_14305	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BJD09_14310	COG0297	glycogen (starch) synthase activity
BJD09_14315	COG0745	RESPONSE REGULATOR receiver
BJD09_14315	COG3706	GGDEF domain
BJD09_14320	COG2354	Protein conserved in bacteria
BJD09_14325	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BJD09_14335	COG1368	sulfuric ester hydrolase activity
BJD09_14340	COG3264	Mechanosensitive ion channel
BJD09_14340	COG1511	domain protein
BJD09_14410	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BJD09_14495	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
BJD09_14500	COG1040	competence protein
BJD09_14505	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
BJD09_14510	COG0156	8-amino-7-oxononanoate synthase activity
BJD09_14520	COG2267	carboxylic ester hydrolase activity
BJD09_14560	COG0445	tRNA wobble uridine modification
BJD09_14580	COG1414	Transcriptional regulator
BJD09_14590	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BJD09_14595	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD09_14605	COG3485	protocatechuate 3,4-dioxygenase
BJD09_14610	COG3485	protocatechuate 3,4-dioxygenase
BJD09_14620	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BJD09_14625	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
BJD09_14650	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BJD09_14655	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BJD09_14710	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BJD09_14725	COG0129	dihydroxy-acid dehydratase activity
BJD09_14765	COG1733	regulation of RNA biosynthetic process
BJD09_14770	COG0702	epimerase
BJD09_14805	COG0583	DNA-binding transcription factor activity
BJD09_14810	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BJD09_14815	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BJD09_14825	COG1538	Outer membrane efflux protein
BJD09_14835	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD09_14840	COG2205	protein histidine kinase activity
BJD09_14845	COG0745	RESPONSE REGULATOR receiver
BJD09_14865	COG1902	pentaerythritol trinitrate reductase activity
BJD09_14870	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BJD09_14885	COG2814	Major facilitator Superfamily
BJD09_14890	COG0583	DNA-binding transcription factor activity
BJD09_14905	COG0084	hydrolase, TatD family'
BJD09_14930	COG2252	PERMEase
BJD09_14975	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BJD09_14995	COG2072	flavoprotein involved in K transport
BJD09_15000	COG2351	hydroxyisourate hydrolase activity
BJD09_15005	COG4807	Protein conserved in bacteria
BJD09_15015	COG1643	Atp-dependent helicase
BJD09_15030	COG1187	pseudouridine synthase activity
BJD09_15045	COG2130	NADP-dependent
BJD09_15075	COG1764	response to oxidative stress
BJD09_15080	COG1846	Transcriptional regulator
BJD09_15085	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
BJD09_15095	COG0697	spore germination
BJD09_15105	COG0523	cobalamin synthesis protein
BJD09_15165	COG1960	acyl-CoA dehydrogenase activity
BJD09_15170	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BJD09_15200	COG3706	GGDEF domain
BJD09_15205	COG2224	Isocitrate lyase
BJD09_15210	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
BJD09_15215	COG0583	DNA-binding transcription factor activity
BJD09_15220	COG0475	glutathione-regulated potassium exporter activity
BJD09_15250	COG0339	signal peptide processing
BJD09_15275	COG0564	pseudouridine synthase activity
BJD09_15285	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BJD09_15300	COG1181	Belongs to the D-alanine--D-alanine ligase family
BJD09_15315	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BJD09_15320	COG0318	PFAM AMP-dependent synthetase and ligase
BJD09_15330	COG0596	Alpha beta hydrolase
BJD09_15340	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD09_15355	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BJD09_15380	COG2205	protein histidine kinase activity
BJD09_15385	COG0028	Belongs to the TPP enzyme family
BJD09_15400	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
BJD09_15405	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
BJD09_15410	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BJD09_15445	COG0183	Belongs to the thiolase family
BJD09_15455	COG0346	lactoylglutathione lyase activity
BJD09_15465	COG2032	superoxide dismutase activity
BJD09_15470	COG2032	superoxide dismutase activity
BJD09_15475	COG2204	response regulator
BJD09_15480	COG3852	Histidine kinase
BJD09_15485	COG0004	ammonium transporteR
BJD09_15490	COG0347	Belongs to the P(II) protein family
BJD09_15495	COG0174	glutamine synthetase
BJD09_15505	COG1968	undecaprenyl-diphosphatase activity
BJD09_15550	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD09_15560	COG2062	phosphohistidine phosphatase, SixA
BJD09_15565	COG0489	protein tyrosine kinase activity
BJD09_15590	COG1396	sequence-specific DNA binding
BJD09_15610	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BJD09_15625	COG1125	glycine betaine transport
BJD09_15640	COG1119	ATPase activity
BJD09_15650	COG1752	Esterase of the alpha-beta hydrolase superfamily
BJD09_15660	COG1522	sequence-specific DNA binding
BJD09_15665	COG3186	Phenylalanine-4-hydroxylase
BJD09_15680	COG2755	lipolytic protein G-D-S-L family
BJD09_15690	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_15695	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
BJD09_15705	COG1609	Transcriptional regulator
BJD09_15710	COG3507	Belongs to the glycosyl hydrolase 43 family
BJD09_15725	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
BJD09_15735	COG2755	lipolytic protein G-D-S-L family
BJD09_15735	COG0657	acetylesterase activity
BJD09_15760	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BJD09_15765	COG0366	Alpha amylase catalytic
BJD09_15770	COG0366	Alpha amylase catalytic
BJD09_15860	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BJD09_15865	COG3710	Transcriptional regulator
BJD09_15885	COG2197	response regulator
BJD09_15890	COG4585	Histidine kinase
BJD09_15905	COG1304	FMN binding
BJD09_15930	COG1012	belongs to the aldehyde dehydrogenase family
BJD09_15935	COG0662	Cupin 2, conserved barrel domain protein
BJD09_15945	COG4772	TonB-dependent receptor
BJD09_15955	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
BJD09_15985	COG0714	Associated with various cellular activities
BJD09_16025	COG0477	Major facilitator Superfamily
BJD09_16035	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD09_16085	COG3237	CsbD-like
BJD09_16155	COG2249	NAD(P)H dehydrogenase (quinone) activity
BJD09_16180	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_16185	COG0300	oxidoreductase activity
BJD09_16205	COG1272	protein, Hemolysin III
BJD09_16210	COG1205	dead DEAH box helicase
BJD09_16210	COG1111	helicase
BJD09_16335	COG1132	(ABC) transporter
BJD09_16365	COG0367	asparagine synthase
BJD09_16385	COG0297	glycogen (starch) synthase activity
BJD09_16385	COG0438	transferase activity, transferring glycosyl groups
BJD09_16390	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
BJD09_16405	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
BJD09_16455	COG0070	glutamate synthase
BJD09_16455	COG0067	glutamate synthase
BJD09_16455	COG0069	glutamate synthase activity
BJD09_16460	COG0493	'glutamate synthase
BJD09_16470	COG1064	alcohol dehydrogenase
BJD09_16485	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD09_16495	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD09_16505	COG2234	aminopeptidase activity
BJD09_16515	COG4942	peptidase
BJD09_16520	COG0793	Belongs to the peptidase S41A family
BJD09_16565	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD09_16575	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
BJD09_16605	COG0501	Belongs to the peptidase M48B family
BJD09_16615	COG0187	DNA topoisomerase II activity
BJD09_16620	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BJD09_16630	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
BJD09_16640	COG0230	Belongs to the bacterial ribosomal protein bL34 family
BJD09_16645	COG0594	ribonuclease P activity
BJD09_16650	COG0706	membrane insertase activity
BJD09_16655	COG0726	polysaccharide deacetylase
BJD09_16660	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
BJD09_16675	COG0584	glycerophosphoryl diester phosphodiesterase
BJD09_16690	COG0861	Integral membrane protein TerC family
BJD09_16700	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BJD09_16715	COG2271	Major facilitator Superfamily
BJD09_16720	COG1929	Belongs to the glycerate kinase type-1 family
BJD09_16725	COG3835	regulator
BJD09_16730	COG3706	GGDEF domain
BJD09_16745	COG3537	Alpha-1,2-mannosidase
BJD09_16750	COG0531	amino acid
BJD09_16760	COG0625	glutathione transferase activity
BJD09_16775	COG0583	DNA-binding transcription factor activity
BJD09_16780	COG0604	alcohol dehydrogenase
BJD09_16785	COG1322	Protein conserved in bacteria
BJD09_16795	COG0386	Belongs to the glutathione peroxidase family
BJD09_16805	COG2853	Lipoprotein
BJD09_16820	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BJD09_16825	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BJD09_16830	COG1127	ABC transporter
BJD09_16845	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
BJD09_16850	COG1074	ATP-dependent DNA helicase activity
BJD09_16890	COG0439	Biotin carboxylase
BJD09_16940	COG0564	pseudouridine synthase activity
BJD09_16965	COG1487	ribonuclease activity
BJD09_16970	COG4691	Plasmid stability protein
BJD09_16990	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD09_17000	COG0477	Major facilitator Superfamily
BJD09_17005	COG1289	transmembrane transporter activity
BJD09_17015	COG1566	PFAM secretion protein HlyD family protein
BJD09_17030	COG0302	gtp cyclohydrolase
BJD09_17050	COG0730	response to heat
BJD09_17055	COG3012	SEC-C Motif Domain Protein
BJD09_17065	COG0676	glucose-6-phosphate 1-epimerase activity
BJD09_17085	COG3135	benzoate transporter
BJD09_17120	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
BJD09_17130	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
BJD09_17140	COG1435	thymidine kinase activity
BJD09_17145	COG0210	DNA helicase
BJD09_17160	COG3132	Protein of unknown function, DUF480
BJD09_17170	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
BJD09_17175	COG0284	orotidine-5'-phosphate decarboxylase activity
BJD09_17205	COG2937	Belongs to the GPAT DAPAT family
BJD09_17270	COG2211	Major facilitator Superfamily
BJD09_17285	COG3693	PFAM glycoside hydrolase, family 10
BJD09_17300	COG1904	glucuronate isomerase
BJD09_17305	COG3250	beta-galactosidase activity
BJD09_17315	COG3386	PFAM SMP-30 Gluconolaconase
BJD09_17390	COG0246	Mannitol dehydrogenase
BJD09_17395	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD09_17405	COG4948	Mandelate Racemase Muconate Lactonizing
BJD09_17415	COG3661	Belongs to the glycosyl hydrolase 67 family
BJD09_17425	COG2115	Belongs to the xylose isomerase family
BJD09_17435	COG0037	tRNA processing
BJD09_17440	COG2974	May be involved in recombination
BJD09_17465	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
BJD09_17475	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BJD09_17480	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BJD09_17485	COG0805	protein transport
BJD09_17495	COG0519	Catalyzes the synthesis of GMP from XMP
BJD09_17495	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BJD09_17510	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD09_17515	COG0752	glycyl-tRNA synthetase alpha subunit
BJD09_17550	COG0729	surface antigen
BJD09_17555	COG2911	Protein conserved in bacteria
BJD09_17575	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD09_17585	COG3265	gluconokinase activity
BJD09_17590	COG2211	Major facilitator Superfamily
BJD09_17595	COG3459	Glycosyltransferase 36 associated
BJD09_17610	COG2205	protein histidine kinase activity
BJD09_17615	COG1971	Probably functions as a manganese efflux pump
BJD09_17620	COG1414	Transcriptional regulator
BJD09_17625	COG0738	Major facilitator superfamily
BJD09_17630	COG3254	rhamnose metabolic process
BJD09_17640	COG4948	Mandelate Racemase Muconate Lactonizing
BJD09_17650	COG0179	Fumarylacetoacetate (FAA) hydrolase
BJD09_17655	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_17675	COG3507	Belongs to the glycosyl hydrolase 43 family
BJD09_17705	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BJD09_17715	COG3162	membrane
BJD09_17720	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BJD09_17730	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BJD09_17740	COG1846	Transcriptional regulator
BJD09_17740	COG1940	carbohydrate kinase activity
BJD09_17745	COG0708	Exodeoxyribonuclease III
BJD09_17760	COG2091	lysine biosynthetic process via aminoadipic acid
BJD09_17770	COG3540	Alkaline phosphatase
BJD09_17775	COG0357	Ribosomal RNA small subunit methyltransferase G
BJD09_17795	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD09_17805	COG0227	Belongs to the bacterial ribosomal protein bL28 family
BJD09_17810	COG0267	Belongs to the bacterial ribosomal protein bL33 family
BJD09_17815	COG2159	amidohydrolase
BJD09_17830	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BJD09_17835	COG0583	DNA-binding transcription factor activity
BJD09_17840	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD09_17855	COG0210	DNA helicase
BJD09_17990	COG3501	Rhs element vgr protein
BJD09_18025	COG0631	protein serine/threonine phosphatase activity
BJD09_18030	COG0515	serine threonine protein kinase
BJD09_18030	COG2815	serine threonine protein kinase
BJD09_18070	COG0408	coproporphyrinogen oxidase activity
BJD09_18090	COG1506	peptidase
BJD09_18090	COG0823	Involved in the tonB-independent uptake of proteins
BJD09_18090	COG4946	Tricorn protease homolog
BJD09_18120	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BJD09_18135	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BJD09_18175	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_18195	COG0463	Glycosyl transferase, family 2
BJD09_18205	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BJD09_18210	COG3100	YcgL domain-containing protein
BJD09_18225	COG3387	PFAM Glycoside hydrolase 15-related
BJD09_18230	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BJD09_18250	COG2239	Acts as a magnesium transporter
BJD09_18255	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BJD09_18255	COG1042	CoA-binding domain protein
BJD09_18255	COG0045	succinate-CoA ligase (ADP-forming) activity
BJD09_18270	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BJD09_18280	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BJD09_18315	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BJD09_18325	COG0842	Transport permease protein
BJD09_18330	COG1131	(ABC) transporter
BJD09_18335	COG0633	Ferredoxin
BJD09_18335	COG0543	2 iron, 2 sulfur cluster binding
BJD09_18380	COG1476	TRANSCRIPTIONal
BJD09_18390	COG4555	ABC transporter
BJD09_18430	COG0625	glutathione transferase activity
BJD09_18495	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BJD09_18510	COG1199	ATP-dependent helicase activity
BJD09_18550	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BJD09_18560	COG0745	RESPONSE REGULATOR receiver
BJD09_18565	COG2205	protein histidine kinase activity
BJD09_18600	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
BJD09_18615	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
BJD09_18660	COG3237	CsbD-like
BJD09_18665	COG0180	Tryptophanyl-tRNA synthetase
BJD09_18690	COG0697	spore germination
BJD09_18715	COG1136	(ABC) transporter
BJD09_18720	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD09_18725	COG4585	Histidine kinase
BJD09_18730	COG2197	response regulator
BJD09_18745	COG0753	catalase activity
BJD09_18760	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BJD09_18765	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BJD09_18790	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BJD09_18820	COG0642	Histidine kinase
BJD09_18825	COG0745	RESPONSE REGULATOR receiver
BJD09_18830	COG1090	epimerase
BJD09_18865	COG1690	Belongs to the RtcB family
BJD09_18905	COG4943	cyclic-guanylate-specific phosphodiesterase activity
BJD09_18920	COG0606	chelatase, subunit chli
BJD09_18960	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
BJD09_18965	COG1166	arginine decarboxylase activity
BJD09_18970	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BJD09_18980	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
BJD09_18980	COG2755	lipolytic protein G-D-S-L family
BJD09_18985	COG4221	oxidoreductase activity
BJD09_19000	COG0018	arginyl-trna synthetase
BJD09_19005	COG2003	Belongs to the UPF0758 family
BJD09_19010	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BJD09_19015	COG0756	dUTP diphosphatase activity
BJD09_19035	COG0463	Glycosyl transferase, family 2
BJD09_19055	COG1475	DNA binding
BJD09_19060	COG1192	Involved in chromosome partitioning
BJD09_19070	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
BJD09_19075	COG0708	Exodeoxyribonuclease III
BJD09_19080	COG2211	Major facilitator Superfamily
BJD09_19090	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
BJD09_19095	COG0739	heme binding
BJD09_19100	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BJD09_19145	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BJD09_19160	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
BJD09_19190	COG0109	protoheme IX farnesyltransferase activity
BJD09_19205	COG0358	DNA primase activity
BJD09_19210	COG1295	ribonuclease BN
BJD09_19220	COG1610	YqeY-like protein
BJD09_19225	COG0828	Belongs to the bacterial ribosomal protein bS21 family
BJD09_19230	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
BJD09_19235	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BJD09_19245	COG2133	pyrroloquinoline quinone binding
BJD09_19250	COG4682	membrane
BJD09_19265	COG0531	amino acid
BJD09_19275	COG4948	Mandelate Racemase Muconate Lactonizing
BJD09_19285	COG3023	N-Acetylmuramoyl-L-alanine amidase
BJD09_19290	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
BJD09_19335	COG5383	Protein conserved in bacteria
BJD09_19345	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD09_19350	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD09_19355	COG1473	amidohydrolase
BJD09_19360	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BJD09_19360	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BJD09_19365	COG1652	LysM domain
BJD09_19375	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
BJD09_19380	COG1518	maintenance of DNA repeat elements
BJD09_19425	COG0583	DNA-binding transcription factor activity
BJD09_19430	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
BJD09_19435	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
BJD09_19440	COG3118	belongs to the thioredoxin family
BJD09_19445	COG0513	Belongs to the DEAD box helicase family
BJD09_19450	COG2884	Cell division ATP-binding protein ftsE
BJD09_19455	COG2177	Part of the ABC transporter FtsEX involved in
BJD09_19460	COG3437	response regulator, receiver
BJD09_19465	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
BJD09_19470	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BJD09_19475	COG2860	membrane
BJD09_19480	COG1252	NADH dehydrogenase
BJD09_19495	COG0625	glutathione transferase activity
BJD09_19500	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BJD09_19520	COG0534	Mate efflux family protein
BJD09_19525	COG0616	signal peptide processing
BJD09_19535	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_19550	COG0009	L-threonylcarbamoyladenylate synthase
BJD09_19555	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BJD09_19555	COG1754	DNA topoisomerase type I activity
BJD09_19570	COG2922	Belongs to the Smg family
BJD09_19575	COG0758	DNA mediated transformation
BJD09_19580	COG1652	LysM domain
BJD09_19585	COG0242	peptide deformylase activity
BJD09_19590	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BJD09_19595	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BJD09_19595	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BJD09_19650	COG1560	Kdo2-lipid A biosynthetic process
BJD09_19655	COG1490	D-aminoacyl-tRNA deacylase activity
BJD09_19660	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BJD09_19695	COG0024	Methionine aminopeptidase
BJD09_19740	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BJD09_19760	COG0840	transmembrane signaling receptor activity
BJD09_19790	COG0251	oxidation-reduction process
BJD09_19865	COG1063	alcohol dehydrogenase
BJD09_19880	COG1132	(ABC) transporter
BJD09_19900	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BJD09_19905	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_19920	COG1294	oxidase, subunit
BJD09_19925	COG1271	oxidase subunit
BJD09_19940	COG2204	response regulator
BJD09_19975	COG3546	catalase activity
BJD09_19980	COG3685	Protein conserved in bacteria
BJD09_20005	COG2972	Histidine kinase
BJD09_20020	COG0531	amino acid
BJD09_20055	COG0667	Aldo Keto reductase
BJD09_20065	COG0583	DNA-binding transcription factor activity
BJD09_20075	COG3384	dioxygenase
BJD09_20085	COG1573	uracil-dna glycosylase
BJD09_20090	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
BJD09_20100	COG0025	NhaP-type Na H and K H
BJD09_20105	COG1131	(ABC) transporter
BJD09_20110	COG0842	Transport permease protein
BJD09_20165	COG1522	sequence-specific DNA binding
BJD09_20170	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD09_20175	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BJD09_20195	COG2202	Pas domain
BJD09_20195	COG2205	protein histidine kinase activity
BJD09_20215	COG2813	Specifically methylates the guanine in position
BJD09_20220	COG1187	pseudouridine synthase activity
BJD09_20225	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BJD09_20245	COG5002	protein histidine kinase activity
BJD09_20245	COG2198	Histidine kinase
BJD09_20245	COG0784	Response regulator, receiver
BJD09_20255	COG1666	GTP binding
BJD09_20260	COG0697	spore germination
BJD09_20265	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BJD09_20270	COG2011	ABC-type metal ion transport system permease component
BJD09_20310	COG0508	dehydrogenase complex catalyzes the overall conversion of
BJD09_20320	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BJD09_20340	COG0356	it plays a direct role in the translocation of protons across the membrane
BJD09_20350	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
BJD09_20355	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BJD09_20360	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
BJD09_20365	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
BJD09_20370	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
BJD09_20375	COG0355	proton-transporting ATP synthase activity, rotational mechanism
BJD09_20390	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
BJD09_20410	COG0577	efflux transmembrane transporter activity
BJD09_20415	COG1136	(ABC) transporter
BJD09_20415	COG0577	efflux transmembrane transporter activity
BJD09_20420	COG4591	ABC-type transport system involved in lipoprotein release permease component
BJD09_20420	COG1136	(ABC) transporter
BJD09_20425	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD09_20430	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BJD09_20470	COG2132	Multicopper oxidase
BJD09_20485	COG0339	signal peptide processing
BJD09_20500	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BJD09_20505	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BJD09_20520	COG2819	hydrolase of the alpha beta superfamily
BJD09_20530	COG1956	GAF domain-containing protein
BJD09_20535	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
BJD09_20545	COG0720	synthase
BJD09_20555	COG4206	TonB-dependent receptor
BJD09_20565	COG0513	Belongs to the DEAD box helicase family
BJD09_20580	COG0625	glutathione transferase activity
BJD09_20615	COG0626	cystathionine gamma-synthase activity
BJD09_20635	COG1216	Glycosyl transferase, family 2
BJD09_20635	COG0438	transferase activity, transferring glycosyl groups
BJD09_20665	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BJD09_20680	COG0277	FAD linked oxidase domain protein
BJD09_20685	COG0546	phosphoglycolate phosphatase activity
BJD09_20685	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
BJD09_20700	COG2086	electron transfer activity
BJD09_20735	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
BJD09_20735	COG0662	Cupin 2, conserved barrel domain protein
BJD09_20740	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BJD09_20775	COG3218	ABC-type transport auxiliary lipoprotein component
BJD09_20775	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BJD09_20780	COG1127	ABC transporter
BJD09_20785	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BJD09_20800	COG0442	prolyl-tRNA aminoacylation
BJD09_20810	COG1183	phosphatidylcholine synthase activity
BJD09_20840	COG0525	valine-tRNA ligase activity
BJD09_20855	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BJD09_20865	COG0795	lipopolysaccharide-transporting ATPase activity
BJD09_20880	COG4974	Belongs to the 'phage' integrase family
BJD09_20890	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BJD09_20905	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BJD09_20905	COG0047	phosphoribosylformylglycinamidine synthase activity
BJD09_20915	COG5295	Hep Hag repeat protein
BJD09_20920	COG1404	Belongs to the peptidase S8 family
BJD09_20925	COG5295	Hep Hag repeat protein
BJD09_20930	COG1404	Belongs to the peptidase S8 family
BJD09_20935	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD09_20945	COG1459	type II secretion system
BJD09_20950	COG2165	general secretion pathway protein
BJD09_20955	COG4970	Tfp pilus assembly protein FimT
BJD09_20960	COG2165	general secretion pathway protein
BJD09_20965	COG4795	General secretion pathway protein
BJD09_20970	COG3156	type II secretion system protein K
BJD09_20975	COG3166	PFAM Fimbrial assembly family protein
BJD09_20990	COG1450	Type ii and iii secretion system protein
BJD09_21000	COG2188	Transcriptional regulator
BJD09_21055	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
BJD09_21070	COG1215	transferase activity, transferring glycosyl groups
BJD09_21075	COG1215	transferase activity, transferring glycosyl groups
BJD09_21080	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
BJD09_21085	COG0457	Tetratricopeptide repeat
BJD09_21115	COG0242	peptide deformylase activity
BJD09_21120	COG1307	EDD domain protein, DegV family
BJD09_21145	COG2801	Transposase and inactivated derivatives
BJD09_21150	COG2963	transposase activity
BJD09_21165	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BJD09_21170	COG0726	polysaccharide deacetylase
BJD09_21175	COG4773	Receptor
BJD09_21205	COG1162	GTPase activity
BJD09_21230	COG2211	Major facilitator Superfamily
BJD09_21235	COG1609	Transcriptional regulator
BJD09_21240	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_21245	COG2851	Citrate transporter
BJD09_21265	COG0642	Histidine kinase
BJD09_21270	COG1840	ABC-type Fe3 transport system, periplasmic component
BJD09_21280	COG2197	response regulator
BJD09_21295	COG0667	Aldo Keto reductase
BJD09_21305	COG0583	DNA-binding transcription factor activity
BJD09_21330	COG1301	dicarboxylic acid transport
BJD09_21335	COG0281	malic enzyme
BJD09_21335	COG0280	phosphate acetyltransferase
BJD09_21360	COG1560	Kdo2-lipid A biosynthetic process
BJD09_21370	COG1519	Transferase
BJD09_21375	COG1538	Outer membrane efflux protein
BJD09_21380	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BJD09_21400	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
BJD09_21405	COG0066	3-isopropylmalate dehydratase activity
BJD09_21410	COG0473	3-isopropylmalate dehydrogenase activity
BJD09_21435	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
BJD09_21440	COG0405	Gamma-glutamyltransferase
BJD09_21445	COG0840	transmembrane signaling receptor activity
BJD09_21460	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
BJD09_21465	COG3710	Transcriptional regulator
BJD09_21485	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
BJD09_21495	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
BJD09_21510	COG0563	adenylate kinase activity
BJD09_21515	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BJD09_21525	COG3781	membrane
BJD09_21530	COG0671	phosphoesterase, PA-phosphatase related
BJD09_21540	COG1028	Short-chain dehydrogenase reductase Sdr
BJD09_21550	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD09_21555	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BJD09_21585	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD09_21600	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
BJD09_21615	COG0352	thiamine-phosphate diphosphorylase activity
BJD09_21620	COG1773	rubredoxin
BJD09_21625	COG2912	Transglutaminase-like superfamily
BJD09_21635	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
BJD09_21645	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BJD09_21665	COG3079	Belongs to the UPF0149 family
BJD09_21670	COG0006	proline dipeptidase activity
BJD09_21680	COG0006	proline dipeptidase activity
BJD09_21695	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BJD09_21700	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
BJD09_21710	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
BJD09_21715	COG1561	YicC-like family, N-terminal region
BJD09_21720	COG0194	GDP metabolic process
BJD09_21725	COG1758	RNA polymerase activity
BJD09_21730	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BJD09_21740	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BJD09_21750	COG0254	rRNA binding
BJD09_21765	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
BJD09_21800	COG0714	Associated with various cellular activities
BJD09_21820	COG2304	oxidoreductase activity
BJD09_21835	COG1301	dicarboxylic acid transport
BJD09_21840	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BJD09_21845	COG0596	Alpha beta hydrolase
BJD09_21850	COG4773	Receptor
BJD09_21860	COG0739	heme binding
BJD09_21865	COG1376	ErfK ybiS ycfS ynhG family protein
BJD09_21900	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
BJD09_21905	COG4149	molybdate abc transporter
BJD09_21910	COG0725	ABC transporter, periplasmic molybdate-binding protein
BJD09_21915	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD09_21915	COG3453	Protein conserved in bacteria
BJD09_21925	COG3047	cAMP biosynthetic process
BJD09_21930	COG3047	cAMP biosynthetic process
BJD09_21940	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BJD09_21965	COG0126	phosphoglycerate kinase activity
BJD09_21975	COG0469	pyruvate kinase activity
BJD09_21990	COG3588	fructose-bisphosphate aldolase
BJD09_21995	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
BJD09_22010	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BJD09_22010	COG1648	precorrin-2 dehydrogenase activity
BJD09_22050	COG0175	sulfate reduction
BJD09_22055	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BJD09_22060	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BJD09_22065	COG0175	sulfate reduction
BJD09_22070	COG0529	Catalyzes the synthesis of activated sulfate
BJD09_22070	COG2895	sulfate adenylyltransferase (ATP) activity
BJD09_22080	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD09_22120	COG0308	aminopeptidase N
BJD09_22130	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BJD09_22145	COG4948	Mandelate Racemase Muconate Lactonizing
BJD09_22150	COG3250	beta-galactosidase activity
BJD09_22160	COG1609	Transcriptional regulator
BJD09_22170	COG1970	mechanosensitive ion channel activity
BJD09_22195	COG0471	metal ion transport
BJD09_22195	COG3273	potassium ion transport
BJD09_22200	COG0220	tRNA (guanine-N7-)-methyltransferase activity
BJD09_22210	COG2022	thiamine diphosphate biosynthetic process
BJD09_22240	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BJD09_22365	COG0784	Response regulator, receiver
BJD09_22365	COG4191	Histidine kinase
BJD09_22370	COG4191	Histidine kinase
BJD09_22370	COG0784	Response regulator, receiver
BJD09_22395	COG2003	Belongs to the UPF0758 family
BJD09_22480	COG0745	RESPONSE REGULATOR receiver
BJD09_22485	COG5002	protein histidine kinase activity
BJD09_22495	COG2801	Transposase and inactivated derivatives
BJD09_22515	COG0237	dephospho-CoA kinase activity
BJD09_22520	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
BJD09_22555	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD09_22570	COG0045	succinate-CoA ligase (ADP-forming) activity
BJD09_22575	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
BJD09_22600	COG2369	cell adhesion
BJD09_22630	COG2951	lytic endotransglycosylase activity
BJD09_22660	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BJD09_22660	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
BJD09_22670	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD09_22675	COG0564	pseudouridine synthase activity
BJD09_22690	COG3011	Protein conserved in bacteria
BJD09_22695	COG0840	transmembrane signaling receptor activity
BJD09_22715	COG3387	PFAM Glycoside hydrolase 15-related
BJD09_22720	COG1877	trehalose-phosphatase activity
BJD09_22760	COG2827	Endonuclease containing a URI domain
BJD09_22765	COG4771	TonB-dependent receptor
BJD09_22775	COG0667	Aldo Keto reductase
BJD09_22780	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BJD09_22785	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BJD09_22790	COG1116	anion transmembrane transporter activity
BJD09_22795	COG0542	response to heat
BJD09_22800	COG4206	TonB-dependent receptor
BJD09_22820	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
BJD09_22830	COG1492	cobalamin metabolic process
BJD09_22840	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
BJD09_22865	COG0019	diaminopimelate decarboxylase activity
BJD09_22880	COG4264	IucA IucC family
BJD09_22890	COG4772	TonB-dependent receptor
BJD09_22915	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BJD09_22915	COG4651	solute:proton antiporter activity
BJD09_22955	COG0488	(ABC) transporter
BJD09_23000	COG0477	Major facilitator Superfamily
BJD09_23015	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
BJD09_23030	COG0217	transcriptional regulatory protein
BJD09_23035	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
BJD09_23040	COG0632	four-way junction helicase activity
BJD09_23045	COG3158	transport of potassium into the cell
BJD09_23055	COG2255	four-way junction helicase activity
BJD09_23060	COG0824	Thioesterase
BJD09_23070	COG0848	biopolymer transport protein
BJD09_23080	COG0823	Involved in the tonB-independent uptake of proteins
BJD09_23085	COG2885	chlorophyll binding
BJD09_23095	COG0602	queuosine metabolic process
BJD09_23105	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
BJD09_23110	COG3920	Histidine kinase
BJD09_23130	COG0840	transmembrane signaling receptor activity
BJD09_23165	COG0514	ATP-dependent DNA helicase (RecQ)
BJD09_23175	COG0783	Belongs to the Dps family
BJD09_23180	COG1643	Atp-dependent helicase
BJD09_23195	COG0837	glucose binding
BJD09_23215	COG0535	radical SAM domain protein
BJD09_23220	COG0535	radical SAM domain protein
BJD09_23225	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
BJD09_23230	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
BJD09_23240	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BJD09_23255	COG1215	transferase activity, transferring glycosyl groups
BJD09_23260	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BJD09_23270	COG1199	ATP-dependent helicase activity
BJD09_23280	COG1397	ADP-ribosylglycohydrolase
BJD09_23290	COG0189	ligase activity
BJD09_23310	COG0840	transmembrane signaling receptor activity
BJD09_23465	COG1199	ATP-dependent helicase activity
BJD09_23475	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
BJD09_23485	COG0745	RESPONSE REGULATOR receiver
BJD09_23565	COG1525	nuclease
BJD09_23600	COG2801	Transposase and inactivated derivatives
BJD09_23605	COG2963	transposase activity
BJD09_23635	COG1475	DNA binding
BJD09_23670	COG0629	single-stranded DNA binding
BJD09_23695	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BJD09_23795	COG4232	protein-disulfide reductase activity
BJD09_23885	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD09_23890	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD09_23905	COG0010	Belongs to the arginase family
BJD09_23960	COG2132	Multicopper oxidase
BJD09_23990	COG0653	protein targeting
BJD09_24015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BJD09_24030	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BJD09_24040	COG0431	NADPH-dependent FMN reductase
BJD09_24045	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
BJD09_24090	COG4644	lycopene metabolic process
BJD09_24115	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BJD09_24430	COG3012	SEC-C Motif Domain Protein
BJD09_24430	COG3318	Belongs to the UPF0149 family
BJD09_24495	COG3012	SEC-C Motif Domain Protein
BJD09_24495	COG3318	Belongs to the UPF0149 family
BJD09_24515	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BJD09_24560	COG2951	lytic endotransglycosylase activity
BJD09_24670	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BJD09_24700	COG1192	Involved in chromosome partitioning
BJD09_24825	COG2948	multi-organism process
BJD09_24830	COG3504	Conjugal transfer protein
BJD09_24940	COG4456	Virulence-associated protein
BJD09_24945	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BJD09_24950	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs