locus-tag class description J162_00004 PF01527 Transposase J162_00006 PF02796 Helix-turn-helix domain of resolvase J162_00006 PF00239 Resolvase, N terminal domain J162_00019 PF07015 VirC1 protein J162_00023 PF03377 TAL effector repeat J162_00027 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system J162_00029 PF02796 Helix-turn-helix domain of resolvase J162_00029 PF00239 Resolvase, N terminal domain J162_00034 PF01526 Tn3 transposase DDE domain J162_00034 PF13700 Domain of unknown function (DUF4158) J162_00037 PF02796 Helix-turn-helix domain of resolvase J162_00037 PF00239 Resolvase, N terminal domain J162_00038 PF03377 TAL effector repeat J162_00042 PF13614 AAA domain J162_00050 PF13406 Transglycosylase SLT domain J162_00051 PF01526 Tn3 transposase DDE domain J162_00051 PF13700 Domain of unknown function (DUF4158) J162_00055 PF03377 TAL effector repeat J162_00059 PF07015 VirC1 protein J162_00072 PF18272 single-stranded DNA binding TraI N-terminal subdomain J162_00072 PF07057 DNA helicase TraI J162_00072 PF18340 DNA relaxase TraI 2B/2B-like domain J162_00072 PF08751 TrwC relaxase J162_00072 PF07057 DNA helicase TraI J162_00072 PF18272 single-stranded DNA binding TraI N-terminal subdomain J162_00072 PF18340 DNA relaxase TraI 2B/2B-like domain J162_00072 PF08751 TrwC relaxase J162_00077 PF01464 Transglycosylase SLT domain J162_00078 PF00437 Type II/IV secretion system protein J162_00079 PF03743 Bacterial conjugation TrbI-like protein J162_00080 PF03524 Conjugal transfer protein J162_00092 PF01527 Transposase J162_00095 PF06613 KorB C-terminal beta-barrel domain J162_00095 PF02195 ParB-like nuclease domain J162_00095 PF08535 KorB domain J162_00096 PF13614 AAA domain J162_00101 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin J162_00102 PF02796 Helix-turn-helix domain of resolvase J162_00102 PF00239 Resolvase, N terminal domain J162_00103 PF13276 HTH-like domain J162_00103 PF00665 Integrase core domain J162_00103 PF13333 Integrase core domain J162_00105 PF03377 TAL effector repeat J162_00106 PF01526 Tn3 transposase DDE domain J162_00106 PF13700 Domain of unknown function (DUF4158) J162_00109 PF00239 Resolvase, N terminal domain J162_00109 PF02796 Helix-turn-helix domain of resolvase J162_00110 PF00308 Bacterial dnaA protein J162_00110 PF11638 DnaA N-terminal domain J162_00110 PF08299 Bacterial dnaA protein helix-turn-helix J162_00111 PF02768 DNA polymerase III beta subunit, C-terminal domain J162_00111 PF00712 DNA polymerase III beta subunit, N-terminal domain J162_00111 PF02767 DNA polymerase III beta subunit, central domain J162_00112 PF02463 RecF/RecN/SMC N terminal domain J162_00114 PF01751 Toprim domain J162_00114 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_00114 PF18053 DNA gyrase B subunit insert domain J162_00114 PF00986 DNA gyrase B subunit, carboxyl terminus J162_00114 PF00204 DNA gyrase B J162_00116 PF01435 Peptidase family M48 J162_00118 PF03544 Gram-negative bacterial TonB protein C-terminal J162_00119 PF01618 MotA/TolQ/ExbB proton channel family J162_00120 PF02472 Biopolymer transport protein ExbD/TolR J162_00121 PF02472 Biopolymer transport protein ExbD/TolR J162_00122 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ J162_00124 PF13091 PLD-like domain J162_00124 PF13396 Phospholipase_D-nuclease N-terminal J162_00127 PF04055 Radical SAM superfamily J162_00129 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J162_00132 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J162_00132 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J162_00133 PF13180 PDZ domain J162_00133 PF03572 Peptidase family S41 J162_00134 PF01551 Peptidase family M23 J162_00136 PF04389 Peptidase family M28 J162_00138 PF00150 Cellulase (glycosyl hydrolase family 5) J162_00139 PF00150 Cellulase (glycosyl hydrolase family 5) J162_00140 PF00150 Cellulase (glycosyl hydrolase family 5) J162_00141 PF00107 Zinc-binding dehydrogenase J162_00141 PF08240 Alcohol dehydrogenase GroES-like domain J162_00142 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J162_00142 PF07992 Pyridine nucleotide-disulphide oxidoreductase J162_00143 PF04898 Glutamate synthase central domain J162_00143 PF01493 GXGXG motif J162_00143 PF00310 Glutamine amidotransferases class-II J162_00143 PF01645 Conserved region in glutamate synthase J162_00147 PF01804 Penicillin amidase J162_00149 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_00149 PF03466 LysR substrate binding domain J162_00152 PF02397 Bacterial sugar transferase J162_00153 PF02350 UDP-N-acetylglucosamine 2-epimerase J162_00155 PF03808 Glycosyl transferase WecB/TagA/CpsF family J162_00156 PF00534 Glycosyl transferases group 1 J162_00156 PF13439 Glycosyltransferase Family 4 J162_00160 PF00733 Asparagine synthase J162_00160 PF13537 Glutamine amidotransferase domain J162_00163 PF16363 GDP-mannose 4,6 dehydratase J162_00166 PF00005 ABC transporter J162_00166 PF00664 ABC transporter transmembrane region J162_00168 PF00733 Asparagine synthase J162_00168 PF13537 Glutamine amidotransferase domain J162_00173 PF00685 Sulfotransferase domain J162_00190 PF00271 Helicase conserved C-terminal domain J162_00190 PF00270 DEAD/DEAH box helicase J162_00190 PF09369 Domain of unknown function (DUF1998) J162_00191 PF03006 Haemolysin-III related J162_00194 PF00106 short chain dehydrogenase J162_00196 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_00196 PF03466 LysR substrate binding domain J162_00200 PF02525 Flavodoxin-like fold J162_00202 PF01527 Transposase J162_00211 PF05532 CsbD-like J162_00215 PF02868 Thermolysin metallopeptidase, alpha-helical domain J162_00215 PF01447 Thermolysin metallopeptidase, catalytic domain J162_00215 PF16485 Protealysin propeptide J162_00217 PF00293 NUDIX domain J162_00217 PF13344 Haloacid dehalogenase-like hydrolase J162_00220 PF00085 Thioredoxin J162_00221 PF08946 Osmosensory transporter coiled coil J162_00221 PF00083 Sugar (and other) transporter J162_00229 PF17863 AAA lid domain J162_00229 PF07726 ATPase family associated with various cellular activities (AAA) J162_00235 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain J162_00236 PF00155 Aminotransferase class I and II J162_00237 PF00593 TonB dependent receptor J162_00237 PF07715 TonB-dependent Receptor Plug Domain J162_00239 PF07883 Cupin domain J162_00240 PF00171 Aldehyde dehydrogenase family J162_00244 PF02735 Ku70/Ku80 beta-barrel domain J162_00245 PF01070 FMN-dependent dehydrogenase J162_00246 PF00144 Beta-lactamase J162_00247 PF07730 Histidine kinase J162_00248 PF00196 Bacterial regulatory proteins, luxR family J162_00248 PF00072 Response regulator receiver domain J162_00252 PF18500 CadC C-terminal domain 1 J162_00252 PF00486 Transcriptional regulatory protein, C terminal J162_00253 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J162_00253 PF07055 Enoyl reductase FAD binding domain J162_00253 PF12241 Trans-2-enoyl-CoA reductase catalytic region J162_00255 PF00294 pfkB family carbohydrate kinase J162_00266 PF01527 Transposase J162_00267 PF13276 HTH-like domain J162_00267 PF00665 Integrase core domain J162_00267 PF13333 Integrase core domain J162_00268 PF00128 Alpha amylase, catalytic domain J162_00268 PF11896 Domain of unknown function (DUF3416) J162_00269 PF16657 Maltogenic Amylase, C-terminal domain J162_00269 PF00128 Alpha amylase, catalytic domain J162_00270 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J162_00270 PF00128 Alpha amylase, catalytic domain J162_00270 PF02806 Alpha amylase, C-terminal all-beta domain J162_00272 PF00248 Aldo/keto reductase family J162_00273 PF00135 Carboxylesterase family J162_00274 PF13472 GDSL-like Lipase/Acylhydrolase family J162_00274 PF07859 alpha/beta hydrolase fold J162_00276 PF03480 Bacterial extracellular solute-binding protein, family 7 J162_00278 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J162_00279 PF04616 Glycosyl hydrolases family 43 J162_00279 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J162_00280 PF00356 Bacterial regulatory proteins, lacI family J162_00281 PF04962 KduI/IolB family J162_00284 PF00657 GDSL-like Lipase/Acylhydrolase J162_00287 PF00351 Biopterin-dependent aromatic amino acid hydroxylase J162_00288 PF01037 Lrp/AsnC ligand binding domain J162_00289 PF07660 Secretin and TonB N terminus short domain J162_00289 PF07715 TonB-dependent Receptor Plug Domain J162_00289 PF00593 TonB dependent receptor J162_00290 PF01734 Patatin-like phospholipase J162_00292 PF00005 ABC transporter J162_00295 PF00005 ABC transporter J162_00296 PF00528 Binding-protein-dependent transport system inner membrane component J162_00298 PF12867 DinB superfamily J162_00298 PF03781 Sulfatase-modifying factor enzyme 1 J162_00301 PF01381 Helix-turn-helix J162_00305 PF10609 NUBPL iron-transfer P-loop NTPase J162_00305 PF01883 Iron-sulfur cluster assembly protein J162_00308 PF13091 PLD-like domain J162_00309 PF03061 Thioesterase superfamily J162_00315 PF00107 Zinc-binding dehydrogenase J162_00315 PF08240 Alcohol dehydrogenase GroES-like domain J162_00317 PF02673 Bacitracin resistance protein BacA J162_00318 PF03951 Glutamine synthetase, beta-Grasp domain J162_00318 PF00120 Glutamine synthetase, catalytic domain J162_00319 PF00543 Nitrogen regulatory protein P-II J162_00320 PF00909 Ammonium Transporter Family J162_00321 PF00989 PAS fold J162_00321 PF00512 His Kinase A (phospho-acceptor) domain J162_00321 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_00322 PF02954 Bacterial regulatory protein, Fis family J162_00322 PF00072 Response regulator receiver domain J162_00322 PF00158 Sigma-54 interaction domain J162_00323 PF00080 Copper/zinc superoxide dismutase (SODC) J162_00324 PF00080 Copper/zinc superoxide dismutase (SODC) J162_00325 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J162_00327 PF02803 Thiolase, C-terminal domain J162_00327 PF00108 Thiolase, N-terminal domain J162_00334 PF00581 Rhodanese-like domain J162_00335 PF02556 Preprotein translocase subunit SecB J162_00336 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J162_00336 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J162_00338 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J162_00338 PF00205 Thiamine pyrophosphate enzyme, central domain J162_00338 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J162_00339 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_00340 PF00158 Sigma-54 interaction domain J162_00340 PF02954 Bacterial regulatory protein, Fis family J162_00340 PF00072 Response regulator receiver domain J162_00343 PF07690 Major Facilitator Superfamily J162_00344 PF00588 SpoU rRNA Methylase family J162_00347 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J162_00347 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J162_00348 PF13784 Fic/DOC family N-terminal J162_00348 PF02661 Fic/DOC family J162_00349 PF00561 alpha/beta hydrolase fold J162_00350 PF03692 Putative zinc- or iron-chelating domain J162_00351 PF00501 AMP-binding enzyme J162_00353 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family J162_00355 PF07478 D-ala D-ala ligase C-terminus J162_00355 PF01820 D-ala D-ala ligase N-terminus J162_00357 PF03109 ABC1 family J162_00359 PF00849 RNA pseudouridylate synthase J162_00361 PF00472 RF-1 domain J162_00363 PF01112 Asparaginase J162_00364 PF01432 Peptidase family M3 J162_00365 PF12706 Beta-lactamase superfamily domain J162_00368 PF12833 Helix-turn-helix domain J162_00369 PF00999 Sodium/hydrogen exchanger family J162_00370 PF03466 LysR substrate binding domain J162_00370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_00371 PF01274 Malate synthase J162_00372 PF00463 Isocitrate lyase family J162_00373 PF00990 Diguanylate cyclase, GGDEF domain J162_00377 PF00326 Prolyl oligopeptidase family J162_00378 PF00289 Biotin carboxylase, N-terminal domain J162_00378 PF00364 Biotin-requiring enzyme J162_00378 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J162_00378 PF02785 Biotin carboxylase C-terminal domain J162_00379 PF01039 Carboxyl transferase domain J162_00380 PF02770 Acyl-CoA dehydrogenase, middle domain J162_00380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J162_00380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J162_00391 PF07683 Cobalamin synthesis protein cobW C-terminal domain J162_00391 PF02492 CobW/HypB/UreG, nucleotide-binding domain J162_00395 PF03969 AFG1-like ATPase J162_00396 PF01047 MarR family J162_00397 PF02566 OsmC-like protein J162_00402 PF00107 Zinc-binding dehydrogenase J162_00402 PF16884 N-terminal domain of oxidoreductase J162_00405 PF00849 RNA pseudouridylate synthase J162_00406 PF00593 TonB dependent receptor J162_00408 PF00270 DEAD/DEAH box helicase J162_00408 PF04408 Helicase associated domain (HA2) J162_00408 PF00271 Helicase conserved C-terminal domain J162_00408 PF08482 ATP-dependent helicase C-terminal J162_00409 PF07308 Protein of unknown function (DUF1456) J162_00410 PF00576 HIUase/Transthyretin family J162_00411 PF13454 FAD-NAD(P)-binding J162_00412 PF01014 Uricase J162_00412 PF09349 OHCU decarboxylase J162_00415 PF00266 Aminotransferase class-V J162_00416 PF07687 Peptidase dimerisation domain J162_00416 PF01546 Peptidase family M20/M25/M40 J162_00417 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_00417 PF03466 LysR substrate binding domain J162_00418 PF07690 Major Facilitator Superfamily J162_00421 PF01425 Amidase J162_00422 PF01156 Inosine-uridine preferring nucleoside hydrolase J162_00424 PF00860 Permease family J162_00425 PF00111 2Fe-2S iron-sulfur cluster binding domain J162_00426 PF00355 Rieske [2Fe-2S] domain J162_00427 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_00427 PF03466 LysR substrate binding domain J162_00428 PF01026 TatD related DNase J162_00431 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_00431 PF03466 LysR substrate binding domain J162_00432 PF07690 Major Facilitator Superfamily J162_00435 PF02146 Sir2 family J162_00436 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J162_00437 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J162_00437 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J162_00439 PF00551 Formyl transferase J162_00440 PF00072 Response regulator receiver domain J162_00440 PF00486 Transcriptional regulatory protein, C terminal J162_00441 PF00512 His Kinase A (phospho-acceptor) domain J162_00441 PF00672 HAMP domain J162_00441 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_00442 PF00529 HlyD membrane-fusion protein of T1SS J162_00442 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J162_00443 PF00873 AcrB/AcrD/AcrF family J162_00444 PF02321 Outer membrane efflux protein J162_00446 PF02219 Methylenetetrahydrofolate reductase J162_00447 PF02677 Epoxyqueuosine reductase QueH J162_00448 PF03466 LysR substrate binding domain J162_00448 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_00449 PF03358 NADPH-dependent FMN reductase J162_00451 PF01717 Cobalamin-independent synthase, Catalytic domain J162_00451 PF08267 Cobalamin-independent synthase, N-terminal domain J162_00452 PF03812 2-keto-3-deoxygluconate permease J162_00454 PF05368 NmrA-like family J162_00455 PF01638 HxlR-like helix-turn-helix J162_00459 PF13276 HTH-like domain J162_00459 PF13333 Integrase core domain J162_00459 PF00665 Integrase core domain J162_00460 PF01527 Transposase J162_00461 PF13495 Phage integrase, N-terminal SAM-like domain J162_00461 PF00589 Phage integrase family J162_00462 PF00920 Dehydratase family J162_00465 PF00132 Bacterial transferase hexapeptide (six repeats) J162_00466 PF07690 Major Facilitator Superfamily J162_00467 PF01966 HD domain J162_00467 PF11871 Domain of unknown function (DUF3391) J162_00471 PF00171 Aldehyde dehydrogenase family J162_00473 PF01494 FAD binding domain J162_00476 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J162_00476 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J162_00477 PF00230 Major intrinsic protein J162_00478 PF16901 C-terminal domain of alpha-glycerophosphate oxidase J162_00478 PF01266 FAD dependent oxidoreductase J162_00479 PF08220 DeoR-like helix-turn-helix domain J162_00479 PF00455 DeoR C terminal sensor domain J162_00481 PF00355 Rieske [2Fe-2S] domain J162_00482 PF01144 Coenzyme A transferase J162_00483 PF01144 Coenzyme A transferase J162_00484 PF02803 Thiolase, C-terminal domain J162_00484 PF00108 Thiolase, N-terminal domain J162_00485 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal J162_00485 PF00775 Dioxygenase J162_00487 PF10397 Adenylosuccinate lyase C-terminus J162_00487 PF00206 Lyase J162_00488 PF12146 Serine aminopeptidase, S33 J162_00489 PF02627 Carboxymuconolactone decarboxylase family J162_00491 PF09339 IclR helix-turn-helix domain J162_00491 PF01614 Bacterial transcriptional regulator J162_00493 PF07859 alpha/beta hydrolase fold J162_00494 PF10677 Protein of unknown function (DUF2490) J162_00495 PF01134 Glucose inhibited division protein A J162_00495 PF13932 GidA associated domain J162_00497 PF00291 Pyridoxal-phosphate dependent enzyme J162_00501 PF13649 Methyltransferase domain J162_00503 PF12697 Alpha/beta hydrolase family J162_00505 PF00155 Aminotransferase class I and II J162_00506 PF06968 Biotin and Thiamin Synthesis associated domain J162_00506 PF04055 Radical SAM superfamily J162_00508 PF01040 UbiA prenyltransferase family J162_00512 PF05819 NolX protein J162_00520 PF01313 Bacterial export proteins, family 3 J162_00521 PF00813 FliP family J162_00524 PF00771 FHIPEP family J162_00525 PF01312 FlhB HrpN YscU SpaS Family J162_00528 PF01514 Secretory protein of YscJ/FliF family J162_00531 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J162_00531 PF02874 ATP synthase alpha/beta family, beta-barrel domain J162_00531 PF18269 T3SS EscN ATPase C-terminal domain J162_00533 PF01311 Bacterial export proteins, family 1 J162_00536 PF01464 Transglycosylase SLT domain J162_00539 PF12795 Mechanosensitive ion channel porin domain J162_00539 PF00924 Mechanosensitive ion channel J162_00539 PF12794 Mechanosensitive ion channel inner membrane domain 1 J162_00540 PF00884 Sulfatase J162_00541 PF03109 ABC1 family J162_00542 PF05661 Protein of unknown function (DUF808) J162_00543 PF00072 Response regulator receiver domain J162_00543 PF00990 Diguanylate cyclase, GGDEF domain J162_00544 PF00534 Glycosyl transferases group 1 J162_00544 PF08323 Starch synthase catalytic domain J162_00545 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J162_00545 PF00128 Alpha amylase, catalytic domain J162_00545 PF02806 Alpha amylase, C-terminal all-beta domain J162_00546 PF11941 Domain of unknown function (DUF3459) J162_00546 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J162_00546 PF00128 Alpha amylase, catalytic domain J162_00547 PF02446 4-alpha-glucanotransferase J162_00548 PF00128 Alpha amylase, catalytic domain J162_00550 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J162_00550 PF00128 Alpha amylase, catalytic domain J162_00551 PF13460 NAD(P)H-binding J162_00554 PF06903 VirK protein J162_00555 PF02321 Outer membrane efflux protein J162_00558 PF00873 AcrB/AcrD/AcrF family J162_00561 PF00270 DEAD/DEAH box helicase J162_00561 PF00271 Helicase conserved C-terminal domain J162_00563 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J162_00563 PF00364 Biotin-requiring enzyme J162_00563 PF02817 e3 binding domain J162_00565 PF02779 Transketolase, pyrimidine binding domain J162_00565 PF02780 Transketolase, C-terminal domain J162_00566 PF00676 Dehydrogenase E1 component J162_00568 PF03301 Tryptophan 2,3-dioxygenase J162_00569 PF00854 POT family J162_00571 PF01047 MarR family J162_00572 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J162_00573 PF04209 homogentisate 1,2-dioxygenase J162_00576 PF03334 Na+/H+ antiporter subunit J162_00577 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) J162_00579 PF00361 Proton-conducting membrane transporter J162_00580 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J162_00581 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J162_00581 PF00361 Proton-conducting membrane transporter J162_00581 PF13244 Domain of unknown function (DUF4040) J162_00581 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J162_00584 PF07504 Fungalysin/Thermolysin Propeptide Motif J162_00584 PF01483 Proprotein convertase P-domain J162_00584 PF01447 Thermolysin metallopeptidase, catalytic domain J162_00584 PF02868 Thermolysin metallopeptidase, alpha-helical domain J162_00585 PF00182 Chitinase class I J162_00589 PF01259 SAICAR synthetase J162_00590 PF00226 DnaJ domain J162_00590 PF05099 Tellurite resistance protein TerB J162_00592 PF00834 Ribulose-phosphate 3 epimerase family J162_00593 PF00583 Acetyltransferase (GNAT) family J162_00594 PF00781 Diacylglycerol kinase catalytic domain J162_00595 PF00425 chorismate binding enzyme J162_00595 PF04715 Anthranilate synthase component I, N terminal region J162_00597 PF00117 Glutamine amidotransferase class-I J162_00599 PF02885 Glycosyl transferase family, helical bundle domain J162_00599 PF00591 Glycosyl transferase family, a/b domain J162_00600 PF00218 Indole-3-glycerol phosphate synthase J162_00602 PF00325 Bacterial regulatory proteins, crp family J162_00602 PF00027 Cyclic nucleotide-binding domain J162_00603 PF02675 S-adenosylmethionine decarboxylase J162_00604 PF00893 Small Multidrug Resistance protein J162_00605 PF03232 Ubiquinone biosynthesis protein COQ7 J162_00606 PF00572 Ribosomal protein L13 J162_00607 PF00380 Ribosomal protein S9/S16 J162_00610 PF00293 NUDIX domain J162_00611 PF00210 Ferritin-like domain J162_00612 PF00672 HAMP domain J162_00612 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_00612 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J162_00612 PF00512 His Kinase A (phospho-acceptor) domain J162_00612 PF01627 Hpt domain J162_00612 PF00072 Response regulator receiver domain J162_00613 PF00072 Response regulator receiver domain J162_00613 PF00486 Transcriptional regulatory protein, C terminal J162_00617 PF01521 Iron-sulphur cluster biosynthesis J162_00620 PF00293 NUDIX domain J162_00620 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain J162_00620 PF09297 NADH pyrophosphatase zinc ribbon domain J162_00621 PF17113 Regulatory signalling modulator protein AmpE J162_00621 PF03186 CobD/Cbib protein J162_00624 PF07690 Major Facilitator Superfamily J162_00625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_00625 PF03466 LysR substrate binding domain J162_00626 PF07690 Major Facilitator Superfamily J162_00627 PF12805 FUSC-like inner membrane protein yccS J162_00628 PF02844 Phosphoribosylglycinamide synthetase, N domain J162_00628 PF02843 Phosphoribosylglycinamide synthetase, C domain J162_00628 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J162_00630 PF02142 MGS-like domain J162_00630 PF01808 AICARFT/IMPCHase bienzyme J162_00631 PF01066 CDP-alcohol phosphatidyltransferase J162_00632 PF12146 Serine aminopeptidase, S33 J162_00632 PF12147 Putative methyltransferase J162_00633 PF00782 Dual specificity phosphatase, catalytic domain J162_00639 PF02954 Bacterial regulatory protein, Fis family J162_00642 PF01381 Helix-turn-helix J162_00647 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J162_00647 PF02785 Biotin carboxylase C-terminal domain J162_00647 PF00289 Biotin carboxylase, N-terminal domain J162_00649 PF00364 Biotin-requiring enzyme J162_00650 PF01220 Dehydroquinase class II J162_00651 PF02683 Cytochrome C biogenesis protein transmembrane region J162_00651 PF11412 Disulphide bond corrector protein DsbC J162_00652 PF03091 CutA1 divalent ion tolerance protein J162_00655 PF01852 START domain J162_00657 PF00106 short chain dehydrogenase J162_00658 PF04231 Endonuclease I J162_00659 PF00166 Chaperonin 10 Kd subunit J162_00660 PF00118 TCP-1/cpn60 chaperonin family J162_00662 PF00593 TonB dependent receptor J162_00662 PF07715 TonB-dependent Receptor Plug Domain J162_00663 PF00793 DAHP synthetase I family J162_00666 PF08450 SMP-30/Gluconolactonase/LRE-like region J162_00668 PF03710 Glutamate-ammonia ligase adenylyltransferase J162_00668 PF08335 GlnD PII-uridylyltransferase J162_00669 PF02592 Putative vitamin uptake transporter J162_00672 PF00881 Nitroreductase family J162_00673 PF04264 YceI-like domain J162_00677 PF16957 Malonate decarboxylase, alpha subunit, transporter J162_00678 PF06857 Malonate decarboxylase delta subunit (MdcD) J162_00679 PF01039 Carboxyl transferase domain J162_00681 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG J162_00682 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase J162_00684 PF00698 Acyl transferase domain J162_00686 PF07729 FCD domain J162_00686 PF00392 Bacterial regulatory proteins, gntR family J162_00687 PF13419 Haloacid dehalogenase-like hydrolase J162_00693 PF07745 Glycosyl hydrolase family 53 J162_00694 PF17831 Pyruvate dehydrogenase E1 component middle domain J162_00694 PF00456 Transketolase, thiamine diphosphate binding domain J162_00695 PF13276 HTH-like domain J162_00695 PF00665 Integrase core domain J162_00695 PF13333 Integrase core domain J162_00696 PF01527 Transposase J162_00697 PF00106 short chain dehydrogenase J162_00700 PF00106 short chain dehydrogenase J162_00702 PF13409 Glutathione S-transferase, N-terminal domain J162_00707 PF12823 Domain of unknown function (DUF3817) J162_00707 PF03176 MMPL family J162_00708 PF00326 Prolyl oligopeptidase family J162_00708 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J162_00709 PF07759 Protein of unknown function (DUF1615) J162_00710 PF05230 MASE2 domain J162_00710 PF00990 Diguanylate cyclase, GGDEF domain J162_00714 PF00892 EamA-like transporter family J162_00715 PF00497 Bacterial extracellular solute-binding proteins, family 3 J162_00718 PF00324 Amino acid permease J162_00720 PF01544 CorA-like Mg2+ transporter protein J162_00722 PF01204 Trehalase J162_00724 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J162_00724 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J162_00729 PF00563 EAL domain J162_00729 PF00990 Diguanylate cyclase, GGDEF domain J162_00729 PF08447 PAS fold J162_00729 PF08448 PAS fold J162_00730 PF00672 HAMP domain J162_00730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_00730 PF02203 Tar ligand binding domain homologue J162_00731 PF00150 Cellulase (glycosyl hydrolase family 5) J162_00731 PF00553 Cellulose binding domain J162_00732 PF00916 Sulfate permease family J162_00732 PF01740 STAS domain J162_00733 PF08448 PAS fold J162_00733 PF00990 Diguanylate cyclase, GGDEF domain J162_00736 PF13632 Glycosyl transferase family group 2 J162_00738 PF07694 5TMR of 5TMR-LYT J162_00738 PF06580 Histidine kinase J162_00739 PF04397 LytTr DNA-binding domain J162_00739 PF00072 Response regulator receiver domain J162_00740 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J162_00740 PF03900 Porphobilinogen deaminase, C-terminal domain J162_00745 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J162_00745 PF00326 Prolyl oligopeptidase family J162_00747 PF00155 Aminotransferase class I and II J162_00748 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J162_00748 PF00326 Prolyl oligopeptidase family J162_00749 PF04304 Protein of unknown function (DUF454) J162_00751 PF01678 Diaminopimelate epimerase J162_00753 PF00589 Phage integrase family J162_00753 PF02899 Phage integrase, N-terminal SAM-like domain J162_00754 PF00227 Proteasome subunit J162_00755 PF10431 C-terminal, D2-small domain, of ClpB protein J162_00755 PF07724 AAA domain (Cdc48 subfamily) J162_00755 PF00004 ATPase family associated with various cellular activities (AAA) J162_00757 PF13673 Acetyltransferase (GNAT) domain J162_00758 PF13533 Biotin-lipoyl like J162_00760 PF01209 ubiE/COQ5 methyltransferase family J162_00761 PF00563 EAL domain J162_00761 PF03707 Bacterial signalling protein N terminal repeat J162_00761 PF00990 Diguanylate cyclase, GGDEF domain J162_00762 PF11838 ERAP1-like C-terminal domain J162_00762 PF01433 Peptidase family M1 domain J162_00765 PF13360 PQQ-like domain J162_00766 PF00497 Bacterial extracellular solute-binding proteins, family 3 J162_00769 PF08240 Alcohol dehydrogenase GroES-like domain J162_00769 PF00107 Zinc-binding dehydrogenase J162_00771 PF02954 Bacterial regulatory protein, Fis family J162_00771 PF00158 Sigma-54 interaction domain J162_00771 PF01590 GAF domain J162_00772 PF00294 pfkB family carbohydrate kinase J162_00774 PF04085 rod shape-determining protein MreC J162_00776 PF03717 Penicillin-binding Protein dimerisation domain J162_00776 PF00905 Penicillin binding protein transpeptidase domain J162_00777 PF01098 Cell cycle protein J162_00778 PF00295 Glycosyl hydrolases family 28 J162_00779 PF13406 Transglycosylase SLT domain J162_00780 PF03330 Lytic transglycolase J162_00780 PF05036 Sporulation related domain J162_00781 PF07943 Penicillin-binding protein 5, C-terminal domain J162_00781 PF00768 D-alanyl-D-alanine carboxypeptidase J162_00783 PF04359 Protein of unknown function (DUF493) J162_00784 PF03099 Biotin/lipoate A/B protein ligase family J162_00785 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family J162_00785 PF04055 Radical SAM superfamily J162_00786 PF00595 PDZ domain J162_00786 PF11818 C-terminal domain of tail specific protease (DUF3340) J162_00786 PF03572 Peptidase family S41 J162_00786 PF17804 Tail specific protease N-terminal domain J162_00788 PF03466 LysR substrate binding domain J162_00788 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_00790 PF01467 Cytidylyltransferase-like J162_00790 PF00293 NUDIX domain J162_00797 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J162_00797 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J162_00798 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J162_00798 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J162_00799 PF04972 BON domain J162_00800 PF00360 Phytochrome region J162_00800 PF00512 His Kinase A (phospho-acceptor) domain J162_00800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_00800 PF01590 GAF domain J162_00800 PF08446 PAS fold J162_00801 PF00072 Response regulator receiver domain J162_00802 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_00802 PF00512 His Kinase A (phospho-acceptor) domain J162_00803 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J162_00812 PF03958 Bacterial type II/III secretion system short domain J162_00812 PF00263 Bacterial type II and III secretion system protein J162_00813 PF00437 Type II/IV secretion system protein J162_00814 PF00482 Type II secretion system (T2SS), protein F J162_00815 PF07963 Prokaryotic N-terminal methylation motif J162_00815 PF08334 Type II secretion system (T2SS), protein G J162_00816 PF07963 Prokaryotic N-terminal methylation motif J162_00816 PF12019 Type II transport protein GspH J162_00818 PF07963 Prokaryotic N-terminal methylation motif J162_00818 PF11612 Type II secretion system (T2SS), protein J J162_00819 PF03934 Type II secretion system (T2SS), protein K J162_00825 PF00703 Glycosyl hydrolases family 2 J162_00825 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J162_00825 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J162_00825 PF16355 Domain of unknown function (DUF4982) J162_00825 PF02837 Glycosyl hydrolases family 2, sugar binding domain J162_00830 PF07690 Major Facilitator Superfamily J162_00831 PF00356 Bacterial regulatory proteins, lacI family J162_00832 PF01380 SIS domain J162_00833 PF01979 Amidohydrolase family J162_00835 PF12627 Probable RNA and SrmB- binding site of polymerase A J162_00835 PF01743 Poly A polymerase head domain J162_00835 PF01966 HD domain J162_00836 PF00732 GMC oxidoreductase J162_00836 PF05199 GMC oxidoreductase J162_00837 PF00171 Aldehyde dehydrogenase family J162_00838 PF02028 BCCT, betaine/carnitine/choline family transporter J162_00840 PF01323 DSBA-like thioredoxin domain J162_00843 PF00034 Cytochrome c J162_00844 PF01926 50S ribosome-binding GTPase J162_00845 PF00753 Metallo-beta-lactamase superfamily J162_00845 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain J162_00845 PF10996 Beta-Casp domain J162_00847 PF04107 Glutamate-cysteine ligase family 2(GCS2) J162_00848 PF00512 His Kinase A (phospho-acceptor) domain J162_00848 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_00848 PF00672 HAMP domain J162_00849 PF00072 Response regulator receiver domain J162_00849 PF00486 Transcriptional regulatory protein, C terminal J162_00852 PF02583 Metal-sensitive transcriptional repressor J162_00853 PF00107 Zinc-binding dehydrogenase J162_00853 PF08240 Alcohol dehydrogenase GroES-like domain J162_00854 PF04828 Glutathione-dependent formaldehyde-activating enzyme J162_00855 PF00756 Putative esterase J162_00856 PF00155 Aminotransferase class I and II J162_00856 PF00392 Bacterial regulatory proteins, gntR family J162_00857 PF02567 Phenazine biosynthesis-like protein J162_00858 PF00892 EamA-like transporter family J162_00860 PF12848 ABC transporter J162_00860 PF00005 ABC transporter J162_00862 PF00464 Serine hydroxymethyltransferase J162_00863 PF03477 ATP cone domain J162_00865 PF01872 RibD C-terminal domain J162_00865 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J162_00868 PF00677 Lumazine binding domain J162_00869 PF00925 GTP cyclohydrolase II J162_00869 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J162_00870 PF00885 6,7-dimethyl-8-ribityllumazine synthase J162_00871 PF01029 NusB family J162_00872 PF00586 AIR synthase related protein, N-terminal domain J162_00872 PF02769 AIR synthase related protein, C-terminal domain J162_00876 PF03814 Potassium-transporting ATPase A subunit J162_00878 PF02669 K+-transporting ATPase, c chain J162_00879 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_00879 PF00512 His Kinase A (phospho-acceptor) domain J162_00879 PF02702 Osmosensitive K+ channel His kinase sensor domain J162_00879 PF13493 Domain of unknown function (DUF4118) J162_00879 PF13492 GAF domain J162_00880 PF00072 Response regulator receiver domain J162_00880 PF00486 Transcriptional regulatory protein, C terminal J162_00883 PF01565 FAD binding domain J162_00883 PF02913 FAD linked oxidases, C-terminal domain J162_00884 PF04307 LexA-binding, inner membrane-associated putative hydrolase J162_00885 PF02021 Uncharacterised protein family UPF0102 J162_00887 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J162_00892 PF02381 MraZ protein, putative antitoxin-like J162_00893 PF01795 MraW methylase family J162_00894 PF04999 Cell division protein FtsL J162_00895 PF00905 Penicillin binding protein transpeptidase domain J162_00895 PF03717 Penicillin-binding Protein dimerisation domain J162_00896 PF02875 Mur ligase family, glutamate ligase domain J162_00896 PF08245 Mur ligase middle domain J162_00896 PF01225 Mur ligase family, catalytic domain J162_00897 PF01225 Mur ligase family, catalytic domain J162_00897 PF08245 Mur ligase middle domain J162_00897 PF02875 Mur ligase family, glutamate ligase domain J162_00898 PF00953 Glycosyl transferase family 4 J162_00899 PF01098 Cell cycle protein J162_00900 PF04101 Glycosyltransferase family 28 C-terminal domain J162_00900 PF03033 Glycosyltransferase family 28 N-terminal domain J162_00901 PF02875 Mur ligase family, glutamate ligase domain J162_00901 PF01225 Mur ligase family, catalytic domain J162_00901 PF08245 Mur ligase middle domain J162_00902 PF01820 D-ala D-ala ligase N-terminus J162_00902 PF07478 D-ala D-ala ligase C-terminus J162_00903 PF03799 Cell division protein FtsQ J162_00903 PF08478 POTRA domain, FtsQ-type J162_00904 PF02491 SHS2 domain inserted in FTSA J162_00905 PF12327 FtsZ family, C-terminal domain J162_00905 PF00091 Tubulin/FtsZ family, GTPase domain J162_00906 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase J162_00908 PF01476 LysM domain J162_00908 PF08525 Opacity-associated protein A N-terminal motif J162_00908 PF01551 Peptidase family M23 J162_00909 PF01043 SecA preprotein cross-linking domain J162_00909 PF07517 SecA DEAD-like domain J162_00909 PF07516 SecA Wing and Scaffold domain J162_00909 PF02810 SEC-C motif J162_00910 PF00293 NUDIX domain J162_00912 PF02219 Methylenetetrahydrofolate reductase J162_00915 PF00550 Phosphopantetheine attachment site J162_00915 PF14765 Polyketide synthase dehydratase J162_00915 PF02801 Beta-ketoacyl synthase, C-terminal domain J162_00915 PF08240 Alcohol dehydrogenase GroES-like domain J162_00915 PF00698 Acyl transferase domain J162_00915 PF00109 Beta-ketoacyl synthase, N-terminal domain J162_00915 PF16197 Ketoacyl-synthetase C-terminal extension J162_00915 PF08659 KR domain J162_00915 PF00107 Zinc-binding dehydrogenase J162_00916 PF09286 Pro-kumamolisin, activation domain J162_00916 PF00082 Subtilase family J162_00918 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J162_00919 PF00128 Alpha amylase, catalytic domain J162_00925 PF13649 Methyltransferase domain J162_00926 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain J162_00926 PF05221 S-adenosyl-L-homocysteine hydrolase J162_00929 PF00311 Phosphoenolpyruvate carboxylase J162_00934 PF00328 Histidine phosphatase superfamily (branch 2) J162_00935 PF00438 S-adenosylmethionine synthetase, N-terminal domain J162_00935 PF02772 S-adenosylmethionine synthetase, central domain J162_00935 PF02773 S-adenosylmethionine synthetase, C-terminal domain J162_00937 PF13649 Methyltransferase domain J162_00938 PF01207 Dihydrouridine synthase (Dus) J162_00941 PF00294 pfkB family carbohydrate kinase J162_00942 PF01773 Na+ dependent nucleoside transporter N-terminus J162_00942 PF07670 Nucleoside recognition J162_00942 PF07662 Na+ dependent nucleoside transporter C-terminus J162_00943 PF00248 Aldo/keto reductase family J162_00945 PF00593 TonB dependent receptor J162_00945 PF07715 TonB-dependent Receptor Plug Domain J162_00950 PF00528 Binding-protein-dependent transport system inner membrane component J162_00951 PF00005 ABC transporter J162_00953 PF02668 Taurine catabolism dioxygenase TauD, TfdA family J162_00955 PF00005 ABC transporter J162_00956 PF13472 GDSL-like Lipase/Acylhydrolase family J162_00957 PF00072 Response regulator receiver domain J162_00957 PF00486 Transcriptional regulatory protein, C terminal J162_00958 PF08521 Two-component sensor kinase N-terminal J162_00958 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_00958 PF00512 His Kinase A (phospho-acceptor) domain J162_00960 PF01219 Prokaryotic diacylglycerol kinase J162_00964 PF01790 Prolipoprotein diacylglyceryl transferase J162_00965 PF00303 Thymidylate synthase J162_00967 PF00186 Dihydrofolate reductase J162_00968 PF00158 Sigma-54 interaction domain J162_00969 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J162_00969 PF08028 Acyl-CoA dehydrogenase, C-terminal domain J162_00970 PF00005 ABC transporter J162_00971 PF00528 Binding-protein-dependent transport system inner membrane component J162_00973 PF00296 Luciferase-like monooxygenase J162_00974 PF03358 NADPH-dependent FMN reductase J162_00978 PF00296 Luciferase-like monooxygenase J162_00979 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J162_00980 PF00528 Binding-protein-dependent transport system inner membrane component J162_00983 PF00005 ABC transporter J162_00983 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J162_00984 PF00149 Calcineurin-like phosphoesterase J162_00985 PF04379 ApaG domain J162_00986 PF00398 Ribosomal RNA adenine dimethylase J162_00987 PF04166 Pyridoxal phosphate biosynthetic protein PdxA J162_00988 PF09312 SurA N-terminal domain J162_00988 PF00639 PPIC-type PPIASE domain J162_00989 PF04453 LPS transport system D J162_00989 PF03968 OstA-like protein J162_00992 PF00850 Histone deacetylase domain J162_00993 PF01923 Cobalamin adenosyltransferase J162_00995 PF01494 FAD binding domain J162_00996 PF01494 FAD binding domain J162_01000 PF00392 Bacterial regulatory proteins, gntR family J162_01000 PF07729 FCD domain J162_01001 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J162_01002 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J162_01002 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit J162_01003 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_01003 PF03466 LysR substrate binding domain J162_01004 PF00501 AMP-binding enzyme J162_01004 PF13193 AMP-binding enzyme C-terminal domain J162_01005 PF00171 Aldehyde dehydrogenase family J162_01006 PF00378 Enoyl-CoA hydratase/isomerase J162_01010 PF08450 SMP-30/Gluconolactonase/LRE-like region J162_01011 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J162_01011 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J162_01012 PF01728 FtsJ-like methyltransferase J162_01012 PF18125 RlmM ferredoxin-like domain J162_01015 PF00892 EamA-like transporter family J162_01016 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J162_01016 PF00749 tRNA synthetases class I (E and Q), catalytic domain J162_01019 PF00072 Response regulator receiver domain J162_01019 PF00990 Diguanylate cyclase, GGDEF domain J162_01020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_01020 PF00672 HAMP domain J162_01020 PF00512 His Kinase A (phospho-acceptor) domain J162_01020 PF01627 Hpt domain J162_01020 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J162_01020 PF00072 Response regulator receiver domain J162_01021 PF00196 Bacterial regulatory proteins, luxR family J162_01021 PF00072 Response regulator receiver domain J162_01023 PF01625 Peptide methionine sulfoxide reductase J162_01025 PF00923 Transaldolase/Fructose-6-phosphate aldolase J162_01026 PF14760 Rnk N-terminus J162_01026 PF01272 Transcription elongation factor, GreA/GreB, C-term J162_01027 PF03466 LysR substrate binding domain J162_01027 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_01028 PF07992 Pyridine nucleotide-disulphide oxidoreductase J162_01028 PF13192 Thioredoxin domain J162_01029 PF00578 AhpC/TSA family J162_01029 PF10417 C-terminal domain of 1-Cys peroxiredoxin J162_01030 PF05175 Methyltransferase small domain J162_01030 PF17827 PrmC N-terminal domain J162_01031 PF00561 alpha/beta hydrolase fold J162_01033 PF00293 NUDIX domain J162_01034 PF01367 5'-3' exonuclease, C-terminal SAM fold J162_01034 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J162_01034 PF00476 DNA polymerase family A J162_01034 PF01612 3'-5' exonuclease J162_01040 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J162_01040 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J162_01040 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J162_01045 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J162_01046 PF02233 NAD(P) transhydrogenase beta subunit J162_01049 PF01063 Amino-transferase class IV J162_01050 PF04151 Bacterial pre-peptidase C-terminal domain J162_01050 PF00082 Subtilase family J162_01051 PF04151 Bacterial pre-peptidase C-terminal domain J162_01051 PF00082 Subtilase family J162_01052 PF04151 Bacterial pre-peptidase C-terminal domain J162_01052 PF00082 Subtilase family J162_01053 PF04073 Aminoacyl-tRNA editing domain J162_01055 PF17189 Glycosyl hydrolase family 30 beta sandwich domain J162_01055 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain J162_01056 PF17189 Glycosyl hydrolase family 30 beta sandwich domain J162_01056 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain J162_01058 PF03358 NADPH-dependent FMN reductase J162_01059 PF03631 Virulence factor BrkB J162_01060 PF08534 Redoxin J162_01061 PF00708 Acylphosphatase J162_01063 PF03976 Polyphosphate kinase 2 (PPK2) J162_01064 PF00994 Probable molybdopterin binding domain J162_01066 PF00472 RF-1 domain J162_01066 PF03462 PCRF domain J162_01067 PF01488 Shikimate / quinate 5-dehydrogenase J162_01067 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J162_01067 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J162_01069 PF03550 Outer membrane lipoprotein LolB J162_01070 PF00288 GHMP kinases N terminal domain J162_01070 PF08544 GHMP kinases C terminal J162_01072 PF14572 Phosphoribosyl synthetase-associated domain J162_01072 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J162_01073 PF01386 Ribosomal L25p family J162_01073 PF14693 Ribosomal protein TL5, C-terminal domain J162_01074 PF01195 Peptidyl-tRNA hydrolase J162_01075 PF01926 50S ribosome-binding GTPase J162_01075 PF06071 Protein of unknown function (DUF933) J162_01079 PF03143 Elongation factor Tu C-terminal domain J162_01079 PF03144 Elongation factor Tu domain 2 J162_01079 PF00009 Elongation factor Tu GTP binding domain J162_01081 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J162_01082 PF00467 KOW motif J162_01082 PF02357 Transcription termination factor nusG J162_01083 PF00298 Ribosomal protein L11, RNA binding domain J162_01083 PF03946 Ribosomal protein L11, N-terminal domain J162_01084 PF00687 Ribosomal protein L1p/L10e family J162_01085 PF00466 Ribosomal protein L10 J162_01086 PF16320 Ribosomal protein L7/L12 dimerisation domain J162_01086 PF00542 Ribosomal protein L7/L12 C-terminal domain J162_01088 PF04563 RNA polymerase beta subunit J162_01088 PF04565 RNA polymerase Rpb2, domain 3 J162_01088 PF10385 RNA polymerase beta subunit external 1 domain J162_01088 PF00562 RNA polymerase Rpb2, domain 6 J162_01088 PF04560 RNA polymerase Rpb2, domain 7 J162_01088 PF04561 RNA polymerase Rpb2, domain 2 J162_01089 PF04998 RNA polymerase Rpb1, domain 5 J162_01089 PF00623 RNA polymerase Rpb1, domain 2 J162_01089 PF05000 RNA polymerase Rpb1, domain 4 J162_01089 PF04983 RNA polymerase Rpb1, domain 3 J162_01089 PF04997 RNA polymerase Rpb1, domain 1 J162_01090 PF00164 Ribosomal protein S12/S23 J162_01091 PF00177 Ribosomal protein S7p/S5e J162_01092 PF00679 Elongation factor G C-terminus J162_01092 PF14492 Elongation Factor G, domain II J162_01092 PF03764 Elongation factor G, domain IV J162_01092 PF00009 Elongation factor Tu GTP binding domain J162_01092 PF03144 Elongation factor Tu domain 2 J162_01093 PF03143 Elongation factor Tu C-terminal domain J162_01093 PF00009 Elongation factor Tu GTP binding domain J162_01093 PF03144 Elongation factor Tu domain 2 J162_01094 PF00338 Ribosomal protein S10p/S20e J162_01095 PF00297 Ribosomal protein L3 J162_01096 PF00573 Ribosomal protein L4/L1 family J162_01097 PF00276 Ribosomal protein L23 J162_01098 PF03947 Ribosomal Proteins L2, C-terminal domain J162_01098 PF00181 Ribosomal Proteins L2, RNA binding domain J162_01099 PF00203 Ribosomal protein S19 J162_01100 PF00237 Ribosomal protein L22p/L17e J162_01101 PF07650 KH domain J162_01101 PF00189 Ribosomal protein S3, C-terminal domain J162_01102 PF00252 Ribosomal protein L16p/L10e J162_01103 PF00831 Ribosomal L29 protein J162_01104 PF00366 Ribosomal protein S17 J162_01105 PF00238 Ribosomal protein L14p/L23e J162_01106 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J162_01106 PF00467 KOW motif J162_01107 PF00281 Ribosomal protein L5 J162_01107 PF00673 ribosomal L5P family C-terminus J162_01108 PF00253 Ribosomal protein S14p/S29e J162_01109 PF00410 Ribosomal protein S8 J162_01110 PF00347 Ribosomal protein L6 J162_01111 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J162_01112 PF03719 Ribosomal protein S5, C-terminal domain J162_01112 PF00333 Ribosomal protein S5, N-terminal domain J162_01113 PF00327 Ribosomal protein L30p/L7e J162_01114 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J162_01115 PF00344 SecY translocase J162_01116 PF00416 Ribosomal protein S13/S18 J162_01117 PF00411 Ribosomal protein S11 J162_01118 PF00163 Ribosomal protein S4/S9 N-terminal domain J162_01118 PF01479 S4 domain J162_01119 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J162_01119 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J162_01119 PF01000 RNA polymerase Rpb3/RpoA insert domain J162_01120 PF01196 Ribosomal protein L17 J162_01121 PF02600 Disulfide bond formation protein DsbB J162_01123 PF01474 Class-II DAHP synthetase family J162_01125 PF01425 Amidase J162_01128 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J162_01129 PF00056 lactate/malate dehydrogenase, NAD binding domain J162_01129 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J162_01130 PF00043 Glutathione S-transferase, C-terminal domain J162_01130 PF02798 Glutathione S-transferase, N-terminal domain J162_01132 PF07992 Pyridine nucleotide-disulphide oxidoreductase J162_01132 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J162_01133 PF00107 Zinc-binding dehydrogenase J162_01133 PF08240 Alcohol dehydrogenase GroES-like domain J162_01134 PF05736 OprF membrane domain J162_01134 PF00691 OmpA family J162_01136 PF00849 RNA pseudouridylate synthase J162_01138 PF00155 Aminotransferase class I and II J162_01140 PF00528 Binding-protein-dependent transport system inner membrane component J162_01141 PF00528 Binding-protein-dependent transport system inner membrane component J162_01142 PF12857 TOBE-like domain J162_01142 PF00005 ABC transporter J162_01142 PF17850 CysA C-terminal regulatory domain J162_01144 PF08240 Alcohol dehydrogenase GroES-like domain J162_01144 PF00107 Zinc-binding dehydrogenase J162_01146 PF04185 Phosphoesterase family J162_01146 PF05506 Domain of unknown function (DUF756) J162_01147 PF10459 Peptidase S46 J162_01148 PF10459 Peptidase S46 J162_01149 PF00300 Histidine phosphatase superfamily (branch 1) J162_01150 PF02875 Mur ligase family, glutamate ligase domain J162_01150 PF08245 Mur ligase middle domain J162_01153 PF00156 Phosphoribosyl transferase domain J162_01154 PF04305 Protein of unknown function (DUF455) J162_01158 PF00149 Calcineurin-like phosphoesterase J162_01160 PF01569 PAP2 superfamily J162_01161 PF00534 Glycosyl transferases group 1 J162_01161 PF13439 Glycosyltransferase Family 4 J162_01162 PF02541 Ppx/GppA phosphatase family J162_01163 PF13090 Polyphosphate kinase C-terminal domain 2 J162_01163 PF13089 Polyphosphate kinase N-terminal domain J162_01163 PF17941 Polyphosphate kinase C-terminal domain 1 J162_01163 PF02503 Polyphosphate kinase middle domain J162_01164 PF00989 PAS fold J162_01164 PF11808 Phosphate regulon sensor protein PhoR J162_01164 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_01164 PF00512 His Kinase A (phospho-acceptor) domain J162_01165 PF00486 Transcriptional regulatory protein, C terminal J162_01165 PF00072 Response regulator receiver domain J162_01166 PF13181 Tetratricopeptide repeat J162_01166 PF01435 Peptidase family M48 J162_01167 PF00462 Glutaredoxin J162_01169 PF00180 Isocitrate/isopropylmalate dehydrogenase J162_01176 PF01527 Transposase J162_01199 PF01527 Transposase J162_01200 PF00665 Integrase core domain J162_01200 PF13333 Integrase core domain J162_01200 PF13276 HTH-like domain J162_01203 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_01203 PF00512 His Kinase A (phospho-acceptor) domain J162_01203 PF00989 PAS fold J162_01206 PF05698 Bacterial trigger factor protein (TF) C-terminus J162_01206 PF05697 Bacterial trigger factor protein (TF) J162_01207 PF00574 Clp protease J162_01208 PF06689 ClpX C4-type zinc finger J162_01208 PF07724 AAA domain (Cdc48 subfamily) J162_01208 PF10431 C-terminal, D2-small domain, of ClpB protein J162_01209 PF02190 ATP-dependent protease La (LON) substrate-binding domain J162_01209 PF05362 Lon protease (S16) C-terminal proteolytic domain J162_01209 PF00004 ATPase family associated with various cellular activities (AAA) J162_01210 PF00216 Bacterial DNA-binding protein J162_01216 PF05257 CHAP domain J162_01216 PF01476 LysM domain J162_01217 PF00753 Metallo-beta-lactamase superfamily J162_01217 PF16123 Hydroxyacylglutathione hydrolase C-terminus J162_01219 PF00075 RNase H J162_01220 PF00929 Exonuclease J162_01224 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J162_01226 PF00753 Metallo-beta-lactamase superfamily J162_01226 PF12706 Beta-lactamase superfamily domain J162_01227 PF04055 Radical SAM superfamily J162_01227 PF06463 Molybdenum Cofactor Synthesis C J162_01228 PF01967 MoaC family J162_01229 PF02597 ThiS family J162_01230 PF02391 MoaE protein J162_01233 PF01527 Transposase J162_01240 PF12170 DNA polymerase III tau subunit V interacting with alpha J162_01240 PF12169 DNA polymerase III subunits gamma and tau domain III J162_01240 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding J162_01241 PF02575 YbaB/EbfC DNA-binding family J162_01242 PF02132 RecR protein J162_01242 PF13662 Toprim domain J162_01243 PF01230 HIT domain J162_01245 PF11992 Domain of unknown function (DUF3488) J162_01245 PF13559 Domain of unknown function (DUF4129) J162_01245 PF01841 Transglutaminase-like superfamily J162_01247 PF07726 ATPase family associated with various cellular activities (AAA) J162_01247 PF17863 AAA lid domain J162_01251 PF02545 Maf-like protein J162_01252 PF02620 Large ribosomal RNA subunit accumulation protein YceD J162_01253 PF01783 Ribosomal L32p protein family J162_01254 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J162_01254 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J162_01256 PF00698 Acyl transferase domain J162_01258 PF00550 Phosphopantetheine attachment site J162_01259 PF00109 Beta-ketoacyl synthase, N-terminal domain J162_01259 PF02801 Beta-ketoacyl synthase, C-terminal domain J162_01260 PF00425 chorismate binding enzyme J162_01260 PF04715 Anthranilate synthase component I, N terminal region J162_01261 PF02618 YceG-like family J162_01262 PF09115 DNA polymerase III, delta subunit, C terminal J162_01266 PF02954 Bacterial regulatory protein, Fis family J162_01266 PF06506 Propionate catabolism activator J162_01266 PF00158 Sigma-54 interaction domain J162_01268 PF00285 Citrate synthase, C-terminal domain J162_01269 PF00694 Aconitase C-terminal domain J162_01269 PF00330 Aconitase family (aconitate hydratase) J162_01270 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH J162_01272 PF04303 PrpF protein J162_01273 PF07715 TonB-dependent Receptor Plug Domain J162_01273 PF00593 TonB dependent receptor J162_01275 PF00207 Alpha-2-macroglobulin family J162_01275 PF01835 MG2 domain J162_01275 PF17962 Bacterial macroglobulin domain 6 J162_01275 PF07703 Alpha-2-macroglobulin bait region domain J162_01275 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain J162_01275 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain J162_01275 PF11974 Bacterial alpha-2-macroglobulin MG3 domain J162_01275 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain J162_01278 PF00912 Transglycosylase J162_01278 PF06832 Penicillin-Binding Protein C-terminus Family J162_01278 PF00905 Penicillin binding protein transpeptidase domain J162_01280 PF08534 Redoxin J162_01282 PF00226 DnaJ domain J162_01282 PF01556 DnaJ C terminal domain J162_01284 PF00072 Response regulator receiver domain J162_01286 PF01145 SPFH domain / Band 7 family J162_01286 PF12221 Bacterial membrane protein N terminal J162_01287 PF01145 SPFH domain / Band 7 family J162_01289 PF00709 Adenylosuccinate synthetase J162_01290 PF01433 Peptidase family M1 domain J162_01290 PF11838 ERAP1-like C-terminal domain J162_01293 PF00440 Bacterial regulatory proteins, tetR family J162_01306 PF13456 Reverse transcriptase-like J162_01306 PF00300 Histidine phosphatase superfamily (branch 1) J162_01307 PF01256 Carbohydrate kinase J162_01309 PF00723 Glycosyl hydrolases family 15 J162_01311 PF07971 Glycosyl hydrolase family 92 J162_01311 PF17678 Glycosyl hydrolase family 92 N-terminal domain J162_01315 PF07992 Pyridine nucleotide-disulphide oxidoreductase J162_01319 PF17755 UvrA DNA-binding domain J162_01320 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J162_01320 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J162_01321 PF00941 FAD binding domain in molybdopterin dehydrogenase J162_01321 PF03450 CO dehydrogenase flavoprotein C-terminal domain J162_01322 PF01799 [2Fe-2S] binding domain J162_01322 PF00111 2Fe-2S iron-sulfur cluster binding domain J162_01329 PF01726 LexA DNA binding domain J162_01329 PF00717 Peptidase S24-like J162_01332 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J162_01332 PF14579 Helix-hairpin-helix motif J162_01332 PF07733 Bacterial DNA polymerase III alpha NTPase domain J162_01332 PF02811 PHP domain J162_01333 PF00326 Prolyl oligopeptidase family J162_01335 PF03169 OPT oligopeptide transporter protein J162_01338 PF07676 WD40-like Beta Propeller Repeat J162_01338 PF00326 Prolyl oligopeptidase family J162_01338 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J162_01341 PF02311 AraC-like ligand binding domain J162_01341 PF12833 Helix-turn-helix domain J162_01346 PF06628 Catalase-related immune-responsive J162_01346 PF18011 C-terminal domain found in long catalases J162_01346 PF00199 Catalase J162_01347 PF00248 Aldo/keto reductase family J162_01348 PF00135 Carboxylesterase family J162_01349 PF02347 Glycine cleavage system P-protein J162_01352 PF07690 Major Facilitator Superfamily J162_01355 PF00884 Sulfatase J162_01355 PF08019 Phosphoethanolamine transferase EptA/EptB J162_01358 PF00486 Transcriptional regulatory protein, C terminal J162_01358 PF00072 Response regulator receiver domain J162_01359 PF00512 His Kinase A (phospho-acceptor) domain J162_01359 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_01359 PF08521 Two-component sensor kinase N-terminal J162_01361 PF03776 Septum formation topological specificity factor MinE J162_01362 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J162_01363 PF03775 Septum formation inhibitor MinC, C-terminal domain J162_01363 PF05209 Septum formation inhibitor MinC, N-terminal domain J162_01365 PF07730 Histidine kinase J162_01366 PF00072 Response regulator receiver domain J162_01366 PF00196 Bacterial regulatory proteins, luxR family J162_01369 PF00730 HhH-GPD superfamily base excision DNA repair protein J162_01374 PF02222 ATP-grasp domain J162_01376 PF04376 Arginine-tRNA-protein transferase, N terminus J162_01376 PF04377 Arginine-tRNA-protein transferase, C terminus J162_01382 PF00378 Enoyl-CoA hydratase/isomerase J162_01385 PF00005 ABC transporter J162_01385 PF17755 UvrA DNA-binding domain J162_01385 PF17760 UvrA interaction domain J162_01386 PF00829 Ribosomal prokaryotic L21 protein J162_01387 PF01016 Ribosomal L27 protein J162_01388 PF01926 50S ribosome-binding GTPase J162_01388 PF01018 GTP1/OBG J162_01389 PF01649 Ribosomal protein S20 J162_01390 PF03023 Lipid II flippase MurJ J162_01391 PF06574 FAD synthetase J162_01391 PF01687 Riboflavin kinase J162_01392 PF08264 Anticodon-binding domain of tRNA J162_01392 PF00133 tRNA synthetases class I (I, L, M and V) J162_01392 PF06827 Zinc finger found in FPG and IleRS J162_01393 PF01252 Signal peptidase (SPase) II J162_01394 PF02401 LytB protein J162_01396 PF06481 COX Aromatic Rich Motif J162_01396 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J162_01397 PF00115 Cytochrome C and Quinol oxidase polypeptide I J162_01398 PF00510 Cytochrome c oxidase subunit III J162_01399 PF03626 Prokaryotic Cytochrome C oxidase subunit IV J162_01401 PF18073 Rubredoxin metal binding domain J162_01402 PF05656 Protein of unknown function (DUF805) J162_01404 PF12833 Helix-turn-helix domain J162_01405 PF00183 Hsp90 protein J162_01405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_01407 PF08678 Rsbr N terminal J162_01407 PF01740 STAS domain J162_01408 PF01740 STAS domain J162_01409 PF13581 Histidine kinase-like ATPase domain J162_01411 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_01411 PF01627 Hpt domain J162_01411 PF00072 Response regulator receiver domain J162_01411 PF00672 HAMP domain J162_01411 PF00512 His Kinase A (phospho-acceptor) domain J162_01411 PF17149 Periplasmic sensor domain found in signal transduction proteins J162_01412 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_01412 PF08448 PAS fold J162_01412 PF00512 His Kinase A (phospho-acceptor) domain J162_01412 PF13188 PAS domain J162_01412 PF00072 Response regulator receiver domain J162_01413 PF04616 Glycosyl hydrolases family 43 J162_01413 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J162_01414 PF07715 TonB-dependent Receptor Plug Domain J162_01414 PF00593 TonB dependent receptor J162_01415 PF00085 Thioredoxin J162_01416 PF07237 Protein of unknown function (DUF1428) J162_01417 PF13493 Domain of unknown function (DUF4118) J162_01417 PF13492 GAF domain J162_01417 PF02702 Osmosensitive K+ channel His kinase sensor domain J162_01417 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_01417 PF00512 His Kinase A (phospho-acceptor) domain J162_01418 PF01339 CheB methylesterase J162_01419 PF01739 CheR methyltransferase, SAM binding domain J162_01419 PF03705 CheR methyltransferase, all-alpha domain J162_01420 PF00072 Response regulator receiver domain J162_01420 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J162_01420 PF00512 His Kinase A (phospho-acceptor) domain J162_01420 PF01627 Hpt domain J162_01420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_01420 PF00672 HAMP domain J162_01421 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_01421 PF00072 Response regulator receiver domain J162_01421 PF13426 PAS domain J162_01422 PF00072 Response regulator receiver domain J162_01423 PF00722 Glycosyl hydrolases family 16 J162_01424 PF06964 Alpha-L-arabinofuranosidase C-terminal domain J162_01425 PF01263 Aldose 1-epimerase J162_01426 PF01578 Cytochrome C assembly protein J162_01427 PF00448 SRP54-type protein, GTPase domain J162_01427 PF02881 SRP54-type protein, helical bundle domain J162_01427 PF02978 Signal peptide binding domain J162_01428 PF03060 Nitronate monooxygenase J162_01429 PF01063 Amino-transferase class IV J162_01430 PF00886 Ribosomal protein S16 J162_01431 PF01782 RimM N-terminal domain J162_01431 PF05239 PRC-barrel domain J162_01432 PF01746 tRNA (Guanine-1)-methyltransferase J162_01433 PF01245 Ribosomal protein L19 J162_01434 PF01554 MatE J162_01435 PF01554 MatE J162_01438 PF01479 S4 domain J162_01439 PF00141 Peroxidase J162_01441 PF05188 MutS domain II J162_01441 PF05192 MutS domain III J162_01441 PF05190 MutS family domain IV J162_01441 PF00488 MutS domain V J162_01441 PF01624 MutS domain I J162_01444 PF03527 RHS protein J162_01444 PF05593 RHS Repeat J162_01448 PF02837 Glycosyl hydrolases family 2, sugar binding domain J162_01448 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J162_01448 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J162_01448 PF00703 Glycosyl hydrolases family 2 J162_01448 PF16355 Domain of unknown function (DUF4982) J162_01449 PF07745 Glycosyl hydrolase family 53 J162_01451 PF09856 Predicted transcriptional regulator (DUF2083) J162_01451 PF06114 IrrE N-terminal-like domain J162_01451 PF01381 Helix-turn-helix J162_01452 PF00171 Aldehyde dehydrogenase family J162_01453 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J162_01453 PF02770 Acyl-CoA dehydrogenase, middle domain J162_01453 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J162_01454 PF00378 Enoyl-CoA hydratase/isomerase J162_01455 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J162_01455 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J162_01455 PF00378 Enoyl-CoA hydratase/isomerase J162_01456 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J162_01456 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J162_01457 PF01545 Cation efflux family J162_01458 PF00378 Enoyl-CoA hydratase/isomerase J162_01458 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J162_01458 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J162_01459 PF04542 Sigma-70 region 2 J162_01459 PF08281 Sigma-70, region 4 J162_01461 PF13180 PDZ domain J162_01462 PF00009 Elongation factor Tu GTP binding domain J162_01462 PF00679 Elongation factor G C-terminus J162_01462 PF06421 GTP-binding protein LepA C-terminus J162_01462 PF03144 Elongation factor Tu domain 2 J162_01463 PF10502 Signal peptidase, peptidase S26 J162_01465 PF14622 Ribonuclease-III-like J162_01465 PF00035 Double-stranded RNA binding motif J162_01466 PF07650 KH domain J162_01466 PF01926 50S ribosome-binding GTPase J162_01467 PF11967 Recombination protein O N terminal J162_01467 PF02565 Recombination protein O C terminal J162_01469 PF05958 tRNA (Uracil-5-)-methyltransferase J162_01471 PF01323 DSBA-like thioredoxin domain J162_01472 PF01593 Flavin containing amine oxidoreductase J162_01473 PF04244 Deoxyribodipyrimidine photo-lyase-related protein J162_01474 PF00933 Glycosyl hydrolase family 3 N terminal domain J162_01476 PF01048 Phosphorylase superfamily J162_01477 PF00313 'Cold-shock' DNA-binding domain J162_01478 PF01494 FAD binding domain J162_01480 PF08494 DEAD/H associated J162_01480 PF00271 Helicase conserved C-terminal domain J162_01480 PF00270 DEAD/DEAH box helicase J162_01481 PF04675 DNA ligase N terminus J162_01481 PF01068 ATP dependent DNA ligase domain J162_01481 PF04679 ATP dependent DNA ligase C terminal region J162_01483 PF01068 ATP dependent DNA ligase domain J162_01483 PF04679 ATP dependent DNA ligase C terminal region J162_01483 PF04675 DNA ligase N terminus J162_01486 PF00072 Response regulator receiver domain J162_01486 PF00990 Diguanylate cyclase, GGDEF domain J162_01489 PF02803 Thiolase, C-terminal domain J162_01489 PF00108 Thiolase, N-terminal domain J162_01490 PF00082 Subtilase family J162_01490 PF12951 Passenger-associated-transport-repeat J162_01490 PF03797 Autotransporter beta-domain J162_01491 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain J162_01491 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J162_01493 PF01863 Protein of unknown function DUF45 J162_01494 PF07043 Protein of unknown function (DUF1328) J162_01496 PF01258 Prokaryotic dksA/traR C4-type zinc finger J162_01500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J162_01502 PF03831 PhnA domain J162_01502 PF08274 PhnA Zinc-Ribbon J162_01503 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J162_01504 PF07690 Major Facilitator Superfamily J162_01511 PF09924 Uncharacterised conserved protein (DUF2156) J162_01511 PF03706 Lysylphosphatidylglycerol synthase TM region J162_01514 PF01042 Endoribonuclease L-PSP J162_01523 PF04542 Sigma-70 region 2 J162_01523 PF04545 Sigma-70, region 4 J162_01526 PF04060 Putative Fe-S cluster J162_01528 PF09334 tRNA synthetases class I (M) J162_01528 PF01588 Putative tRNA binding domain J162_01531 PF00005 ABC transporter J162_01531 PF13732 Domain of unknown function (DUF4162) J162_01532 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J162_01533 PF00324 Amino acid permease J162_01534 PF02574 Homocysteine S-methyltransferase J162_01536 PF02592 Putative vitamin uptake transporter J162_01540 PF03551 Transcriptional regulator PadR-like family J162_01547 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J162_01548 PF02811 PHP domain J162_01548 PF07733 Bacterial DNA polymerase III alpha NTPase domain J162_01548 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J162_01548 PF14579 Helix-hairpin-helix motif J162_01548 PF01336 OB-fold nucleic acid binding domain J162_01549 PF01351 Ribonuclease HII J162_01550 PF02684 Lipid-A-disaccharide synthetase J162_01551 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 J162_01551 PF00132 Bacterial transferase hexapeptide (six repeats) J162_01552 PF07977 FabA-like domain J162_01553 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD J162_01553 PF00132 Bacterial transferase hexapeptide (six repeats) J162_01555 PF01103 Surface antigen J162_01555 PF07244 Surface antigen variable number repeat J162_01556 PF17820 PDZ domain J162_01556 PF02163 Peptidase family M50 J162_01557 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J162_01557 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J162_01557 PF13288 DXP reductoisomerase C-terminal domain J162_01559 PF01255 Putative undecaprenyl diphosphate synthase J162_01560 PF01765 Ribosome recycling factor J162_01561 PF00696 Amino acid kinase family J162_01562 PF00990 Diguanylate cyclase, GGDEF domain J162_01562 PF00072 Response regulator receiver domain J162_01563 PF00889 Elongation factor TS J162_01564 PF00318 Ribosomal protein S2 J162_01571 PF00557 Metallopeptidase family M24 J162_01572 PF01909 Nucleotidyltransferase domain J162_01572 PF01966 HD domain J162_01572 PF08335 GlnD PII-uridylyltransferase J162_01573 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal J162_01573 PF14602 Hexapeptide repeat of succinyl-transferase J162_01573 PF00132 Bacterial transferase hexapeptide (six repeats) J162_01574 PF03960 ArsC family J162_01575 PF01546 Peptidase family M20/M25/M40 J162_01575 PF07687 Peptidase dimerisation domain J162_01576 PF00733 Asparagine synthase J162_01576 PF13537 Glutamine amidotransferase domain J162_01578 PF00593 TonB dependent receptor J162_01578 PF07715 TonB-dependent Receptor Plug Domain J162_01580 PF01804 Penicillin amidase J162_01581 PF00210 Ferritin-like domain J162_01582 PF05724 Thiopurine S-methyltransferase (TPMT) J162_01584 PF00521 DNA gyrase/topoisomerase IV, subunit A J162_01584 PF03989 DNA gyrase C-terminal domain, beta-propeller J162_01587 PF02321 Outer membrane efflux protein J162_01588 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J162_01588 PF00529 HlyD membrane-fusion protein of T1SS J162_01589 PF07690 Major Facilitator Superfamily J162_01591 PF00933 Glycosyl hydrolase family 3 N terminal domain J162_01591 PF01915 Glycosyl hydrolase family 3 C-terminal domain J162_01591 PF14310 Fibronectin type III-like domain J162_01593 PF00854 POT family J162_01598 PF12802 MarR family J162_01599 PF01432 Peptidase family M3 J162_01600 PF00255 Glutathione peroxidase J162_01601 PF00970 Oxidoreductase FAD-binding domain J162_01601 PF00175 Oxidoreductase NAD-binding domain J162_01602 PF00005 ABC transporter J162_01603 PF05683 Fumarase C-terminus J162_01603 PF05681 Fumarate hydratase (Fumerase) J162_01605 PF00484 Carbonic anhydrase J162_01606 PF02253 Phospholipase A1 J162_01608 PF00313 'Cold-shock' DNA-binding domain J162_01611 PF00899 ThiF family J162_01612 PF01026 TatD related DNase J162_01615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J162_01615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J162_01615 PF02770 Acyl-CoA dehydrogenase, middle domain J162_01617 PF02798 Glutathione S-transferase, N-terminal domain J162_01617 PF00043 Glutathione S-transferase, C-terminal domain J162_01618 PF00733 Asparagine synthase J162_01618 PF13537 Glutamine amidotransferase domain J162_01619 PF03358 NADPH-dependent FMN reductase J162_01620 PF03796 DnaB-like helicase C terminal domain J162_01620 PF00772 DnaB-like helicase N terminal domain J162_01621 PF00875 DNA photolyase J162_01621 PF03441 FAD binding domain of DNA photolyase J162_01622 PF05736 OprF membrane domain J162_01622 PF00691 OmpA family J162_01624 PF03466 LysR substrate binding domain J162_01624 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_01627 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J162_01627 PF00529 HlyD membrane-fusion protein of T1SS J162_01628 PF00873 AcrB/AcrD/AcrF family J162_01629 PF00106 short chain dehydrogenase J162_01630 PF02321 Outer membrane efflux protein J162_01631 PF00990 Diguanylate cyclase, GGDEF domain J162_01631 PF08448 PAS fold J162_01633 PF00990 Diguanylate cyclase, GGDEF domain J162_01650 PF01527 Transposase J162_01659 PF00082 Subtilase family J162_01660 PF01668 SmpB protein J162_01661 PF03364 Polyketide cyclase / dehydrase and lipid transport J162_01662 PF03658 RnfH family Ubiquitin J162_01663 PF04355 SmpA / OmlA family J162_01664 PF01475 Ferric uptake regulator family J162_01665 PF02463 RecF/RecN/SMC N terminal domain J162_01666 PF01628 HrcA protein C terminal domain J162_01666 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding J162_01667 PF01025 GrpE J162_01668 PF00012 Hsp70 protein J162_01669 PF01556 DnaJ C terminal domain J162_01669 PF00684 DnaJ central domain J162_01669 PF00226 DnaJ domain J162_01671 PF08543 Phosphomethylpyrimidine kinase J162_01676 PF00005 ABC transporter J162_01676 PF03412 Peptidase C39 family J162_01676 PF00664 ABC transporter transmembrane region J162_01677 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_01677 PF03466 LysR substrate binding domain J162_01678 PF00005 ABC transporter J162_01678 PF00664 ABC transporter transmembrane region J162_01679 PF01205 Uncharacterized protein family UPF0029 J162_01680 PF03641 Possible lysine decarboxylase J162_01681 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J162_01681 PF07992 Pyridine nucleotide-disulphide oxidoreductase J162_01682 PF02817 e3 binding domain J162_01682 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J162_01682 PF00364 Biotin-requiring enzyme J162_01683 PF02779 Transketolase, pyrimidine binding domain J162_01683 PF16870 2-oxoglutarate dehydrogenase C-terminal J162_01683 PF00676 Dehydrogenase E1 component J162_01683 PF16078 2-oxoglutarate dehydrogenase N-terminus J162_01685 PF08007 Cupin superfamily protein J162_01687 PF08328 Adenylosuccinate lyase C-terminal J162_01687 PF00206 Lyase J162_01689 PF01595 Cyclin M transmembrane N-terminal domain J162_01689 PF03471 Transporter associated domain J162_01689 PF00571 CBS domain J162_01690 PF00206 Lyase J162_01690 PF10415 Fumarase C C-terminus J162_01695 PF00005 ABC transporter J162_01696 PF00392 Bacterial regulatory proteins, gntR family J162_01698 PF00255 Glutathione peroxidase J162_01699 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J162_01699 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J162_01700 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J162_01700 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J162_01700 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J162_01701 PF04102 SlyX J162_01704 PF00356 Bacterial regulatory proteins, lacI family J162_01705 PF07690 Major Facilitator Superfamily J162_01706 PF00294 pfkB family carbohydrate kinase J162_01708 PF02574 Homocysteine S-methyltransferase J162_01708 PF00809 Pterin binding enzyme J162_01708 PF02965 Vitamin B12 dependent methionine synthase, activation domain J162_01708 PF02607 B12 binding domain J162_01708 PF02310 B12 binding domain J162_01709 PF02574 Homocysteine S-methyltransferase J162_01709 PF00809 Pterin binding enzyme J162_01710 PF01209 ubiE/COQ5 methyltransferase family J162_01711 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J162_01711 PF02770 Acyl-CoA dehydrogenase, middle domain J162_01711 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J162_01714 PF08461 Ribonuclease R winged-helix domain J162_01714 PF00773 RNB domain J162_01714 PF08206 Ribonuclease B OB domain J162_01714 PF00575 S1 RNA binding domain J162_01714 PF17876 Cold shock domain J162_01716 PF08032 RNA 2'-O ribose methyltransferase substrate binding J162_01716 PF00588 SpoU rRNA Methylase family J162_01717 PF07694 5TMR of 5TMR-LYT J162_01717 PF00990 Diguanylate cyclase, GGDEF domain J162_01718 PF00929 Exonuclease J162_01720 PF01895 PhoU domain J162_01721 PF00005 ABC transporter J162_01722 PF00528 Binding-protein-dependent transport system inner membrane component J162_01723 PF00528 Binding-protein-dependent transport system inner membrane component J162_01724 PF12849 PBP superfamily domain J162_01725 PF12849 PBP superfamily domain J162_01728 PF00484 Carbonic anhydrase J162_01729 PF00916 Sulfate permease family J162_01729 PF01740 STAS domain J162_01730 PF10576 Iron-sulfur binding domain of endonuclease III J162_01730 PF00730 HhH-GPD superfamily base excision DNA repair protein J162_01730 PF00633 Helix-hairpin-helix motif J162_01732 PF00378 Enoyl-CoA hydratase/isomerase J162_01733 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J162_01733 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J162_01734 PF00293 NUDIX domain J162_01735 PF00581 Rhodanese-like domain J162_01742 PF01170 Putative RNA methylase family UPF0020 J162_01742 PF02926 THUMP domain J162_01742 PF10672 S-adenosylmethionine-dependent methyltransferase J162_01743 PF01513 ATP-NAD kinase J162_01747 PF00929 Exonuclease J162_01747 PF08411 Exonuclease C-terminal J162_01748 PF01494 FAD binding domain J162_01749 PF00266 Aminotransferase class-V J162_01751 PF06052 3-hydroxyanthranilic acid dioxygenase J162_01752 PF00484 Carbonic anhydrase J162_01761 PF00196 Bacterial regulatory proteins, luxR family J162_01761 PF00072 Response regulator receiver domain J162_01764 PF04299 Putative FMN-binding domain J162_01768 PF00152 tRNA synthetases class II (D, K and N) J162_01768 PF01336 OB-fold nucleic acid binding domain J162_01769 PF01521 Iron-sulphur cluster biosynthesis J162_01770 PF01250 Ribosomal protein S6 J162_01771 PF01084 Ribosomal protein S18 J162_01772 PF01281 Ribosomal protein L9, N-terminal domain J162_01772 PF03948 Ribosomal protein L9, C-terminal domain J162_01773 PF02463 RecF/RecN/SMC N terminal domain J162_01774 PF04354 ZipA, C-terminal FtsZ-binding domain J162_01776 PF00155 Aminotransferase class I and II J162_01777 PF01653 NAD-dependent DNA ligase adenylation domain J162_01777 PF00533 BRCA1 C Terminus (BRCT) domain J162_01777 PF03120 NAD-dependent DNA ligase OB-fold domain J162_01777 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J162_01777 PF12826 Helix-hairpin-helix motif J162_01778 PF00152 tRNA synthetases class II (D, K and N) J162_01780 PF01008 Initiation factor 2 subunit family J162_01781 PF00521 DNA gyrase/topoisomerase IV, subunit A J162_01781 PF03989 DNA gyrase C-terminal domain, beta-propeller J162_01782 PF13360 PQQ-like domain J162_01784 PF17392 Urocanase C-terminal domain J162_01784 PF01175 Urocanase Rossmann-like domain J162_01784 PF17391 Urocanase N-terminal domain J162_01786 PF00221 Aromatic amino acid lyase J162_01787 PF07969 Amidohydrolase family J162_01789 PF00392 Bacterial regulatory proteins, gntR family J162_01789 PF07702 UTRA domain J162_01795 PF01794 Ferric reductase like transmembrane component J162_01796 PF00174 Oxidoreductase molybdopterin binding domain J162_01797 PF00266 Aminotransferase class-V J162_01798 PF01817 Chorismate mutase type II J162_01798 PF01842 ACT domain J162_01798 PF00800 Prephenate dehydratase J162_01799 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J162_01801 PF03544 Gram-negative bacterial TonB protein C-terminal J162_01802 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J162_01802 PF02403 Seryl-tRNA synthetase N-terminal domain J162_01803 PF02525 Flavodoxin-like fold J162_01804 PF03466 LysR substrate binding domain J162_01804 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_01807 PF02203 Tar ligand binding domain homologue J162_01807 PF00672 HAMP domain J162_01807 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_01810 PF00072 Response regulator receiver domain J162_01810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_01810 PF08448 PAS fold J162_01810 PF00512 His Kinase A (phospho-acceptor) domain J162_01810 PF13188 PAS domain J162_01811 PF00072 Response regulator receiver domain J162_01811 PF00486 Transcriptional regulatory protein, C terminal J162_01812 PF06745 KaiC J162_01813 PF00072 Response regulator receiver domain J162_01813 PF13426 PAS domain J162_01813 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_01815 PF03918 Cytochrome C biogenesis protein J162_01816 PF08534 Redoxin J162_01817 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J162_01817 PF01578 Cytochrome C assembly protein J162_01818 PF03100 CcmE J162_01820 PF01578 Cytochrome C assembly protein J162_01821 PF00082 Subtilase family J162_01823 PF08281 Sigma-70, region 4 J162_01823 PF04542 Sigma-70 region 2 J162_01826 PF00034 Cytochrome c J162_01829 PF05523 WxcM-like, C-terminal J162_01833 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J162_01834 PF01943 Polysaccharide biosynthesis protein J162_01835 PF00535 Glycosyl transferase family 2 J162_01838 PF08241 Methyltransferase domain J162_01842 PF00534 Glycosyl transferases group 1 J162_01842 PF13579 Glycosyl transferase 4-like domain J162_01845 PF00005 ABC transporter J162_01846 PF00664 ABC transporter transmembrane region J162_01846 PF00005 ABC transporter J162_01847 PF07690 Major Facilitator Superfamily J162_01848 PF00296 Luciferase-like monooxygenase J162_01851 PF00571 CBS domain J162_01851 PF03471 Transporter associated domain J162_01851 PF01595 Cyclin M transmembrane N-terminal domain J162_01853 PF01384 Phosphate transporter family J162_01856 PF00204 DNA gyrase B J162_01856 PF00986 DNA gyrase B subunit, carboxyl terminus J162_01856 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_01856 PF01751 Toprim domain J162_01858 PF00117 Glutamine amidotransferase class-I J162_01858 PF06418 CTP synthase N-terminus J162_01859 PF00793 DAHP synthetase I family J162_01861 PF00113 Enolase, C-terminal TIM barrel domain J162_01861 PF03952 Enolase, N-terminal domain J162_01862 PF04977 Septum formation initiator J162_01863 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J162_01864 PF02542 YgbB family J162_01865 PF01142 tRNA pseudouridine synthase D (TruD) J162_01866 PF01713 Smr domain J162_01867 PF01975 Survival protein SurE J162_01869 PF09335 SNARE associated Golgi protein J162_01870 PF01476 LysM domain J162_01870 PF01551 Peptidase family M23 J162_01872 PF04430 Protein of unknown function (DUF498/DUF598) J162_01873 PF01985 CRS1 / YhbY (CRM) domain J162_01874 PF01728 FtsJ-like methyltransferase J162_01875 PF00004 ATPase family associated with various cellular activities (AAA) J162_01875 PF06480 FtsH Extracellular J162_01875 PF01434 Peptidase family M41 J162_01875 PF17862 AAA+ lid domain J162_01876 PF00809 Pterin binding enzyme J162_01878 PF17209 Hfq protein J162_01879 PF13167 GTP-binding GTPase N-terminal J162_01879 PF16360 GTP-binding GTPase Middle Region J162_01879 PF01926 50S ribosome-binding GTPase J162_01880 PF02464 Competence-damaged protein J162_01881 PF03109 ABC1 family J162_01882 PF00717 Peptidase S24-like J162_01882 PF01726 LexA DNA binding domain J162_01883 PF00154 recA bacterial DNA recombination protein J162_01884 PF02631 RecX family J162_01885 PF01411 tRNA synthetases class II (A) J162_01885 PF02272 DHHA1 domain J162_01885 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J162_01886 PF02599 Global regulator protein family J162_01888 PF13426 PAS domain J162_01888 PF08447 PAS fold J162_01888 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_01889 PF02678 Pirin J162_01889 PF17954 Quercetinase C-terminal cupin domain J162_01890 PF03466 LysR substrate binding domain J162_01890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_01895 PF02581 Thiamine monophosphate synthase J162_01895 PF08543 Phosphomethylpyrimidine kinase J162_01898 PF02562 PhoH-like protein J162_01898 PF13638 PIN domain J162_01899 PF00578 AhpC/TSA family J162_01902 PF00701 Dihydrodipicolinate synthetase family J162_01904 PF11953 Domain of unknown function (DUF3470) J162_01904 PF00037 4Fe-4S binding domain J162_01905 PF05035 2-keto-3-deoxy-galactonokinase J162_01906 PF08450 SMP-30/Gluconolactonase/LRE-like region J162_01907 PF13378 Enolase C-terminal domain-like J162_01907 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J162_01908 PF01081 KDPG and KHG aldolase J162_01910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_01910 PF03466 LysR substrate binding domain J162_01913 PF03442 Carbohydrate binding domain X2 J162_01913 PF00942 Cellulose binding domain J162_01916 PF01055 Glycosyl hydrolases family 31 J162_01916 PF17137 Domain of unknown function (DUF5110) J162_01916 PF16338 Domain of unknown function (DUF4968) J162_01918 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J162_01918 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J162_01920 PF00083 Sugar (and other) transporter J162_01923 PF01520 N-acetylmuramoyl-L-alanine amidase J162_01924 PF02649 Type I GTP cyclohydrolase folE2 J162_01928 PF01743 Poly A polymerase head domain J162_01928 PF12627 Probable RNA and SrmB- binding site of polymerase A J162_01928 PF12626 Polymerase A arginine-rich C-terminus J162_01929 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J162_01930 PF02548 Ketopantoate hydroxymethyltransferase J162_01931 PF02569 Pantoate-beta-alanine ligase J162_01932 PF02261 Aspartate decarboxylase J162_01933 PF00342 Phosphoglucose isomerase J162_01937 PF01915 Glycosyl hydrolase family 3 C-terminal domain J162_01937 PF00933 Glycosyl hydrolase family 3 N terminal domain J162_01937 PF14310 Fibronectin type III-like domain J162_01938 PF00474 Sodium:solute symporter family J162_01939 PF00990 Diguanylate cyclase, GGDEF domain J162_01939 PF01590 GAF domain J162_01939 PF00563 EAL domain J162_01939 PF00360 Phytochrome region J162_01940 PF02013 Cellulose or protein binding domain J162_01940 PF00150 Cellulase (glycosyl hydrolase family 5) J162_01941 PF00072 Response regulator receiver domain J162_01943 PF04551 GcpE protein J162_01944 PF01569 PAP2 superfamily J162_01945 PF07690 Major Facilitator Superfamily J162_01946 PF01177 Asp/Glu/Hydantoin racemase J162_01947 PF00892 EamA-like transporter family J162_01948 PF01565 FAD binding domain J162_01948 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J162_01949 PF01180 Dihydroorotate dehydrogenase J162_01952 PF00171 Aldehyde dehydrogenase family J162_01955 PF00535 Glycosyl transferase family 2 J162_01956 PF01522 Polysaccharide deacetylase J162_01956 PF14883 Hypothetical glycosyl hydrolase family 13 J162_01958 PF17287 POTRA domain J162_01958 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB J162_01958 PF08479 POTRA domain, ShlB-type J162_01959 PF05594 Haemagluttinin repeat J162_01959 PF04829 Pre-toxin domain with VENN motif J162_01959 PF13332 Hemagglutinin repeat J162_01960 PF04829 Pre-toxin domain with VENN motif J162_01960 PF05594 Haemagluttinin repeat J162_01960 PF13332 Hemagglutinin repeat J162_01962 PF05594 Haemagluttinin repeat J162_01962 PF05860 haemagglutination activity domain J162_01962 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain J162_01962 PF13332 Hemagglutinin repeat J162_01962 PF13018 Extended Signal Peptide of Type V secretion system J162_01964 PF00696 Amino acid kinase family J162_01964 PF01842 ACT domain J162_01964 PF13840 ACT domain J162_01964 PF00742 Homoserine dehydrogenase J162_01964 PF03447 Homoserine dehydrogenase, NAD binding domain J162_01965 PF08544 GHMP kinases C terminal J162_01965 PF00288 GHMP kinases N terminal domain J162_01967 PF00291 Pyridoxal-phosphate dependent enzyme J162_01967 PF14821 Threonine synthase N terminus J162_01969 PF13545 Crp-like helix-turn-helix domain J162_01969 PF00027 Cyclic nucleotide-binding domain J162_01970 PF13393 Histidyl-tRNA synthetase J162_01970 PF03129 Anticodon binding domain J162_01972 PF01634 ATP phosphoribosyltransferase J162_01972 PF08029 HisG, C-terminal domain J162_01973 PF00815 Histidinol dehydrogenase J162_01974 PF00155 Aminotransferase class I and II J162_01975 PF00475 Imidazoleglycerol-phosphate dehydratase J162_01976 PF00117 Glutamine amidotransferase class-I J162_01977 PF00977 Histidine biosynthesis protein J162_01978 PF00977 Histidine biosynthesis protein J162_01979 PF01502 Phosphoribosyl-AMP cyclohydrolase J162_01979 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J162_01983 PF03079 ARD/ARD' family J162_01984 PF00596 Class II Aldolase and Adducin N-terminal domain J162_01985 PF13520 Amino acid permease J162_01986 PF13520 Amino acid permease J162_01988 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J162_01988 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J162_01988 PF01842 ACT domain J162_01989 PF01565 FAD binding domain J162_01989 PF02913 FAD linked oxidases, C-terminal domain J162_01993 PF08207 Elongation factor P (EF-P) KOW-like domain J162_01993 PF09285 Elongation factor P, C-terminal J162_01993 PF01132 Elongation factor P (EF-P) OB domain J162_01994 PF00106 short chain dehydrogenase J162_01995 PF00682 HMGL-like J162_01997 PF00378 Enoyl-CoA hydratase/isomerase J162_01999 PF07664 Ferrous iron transport protein B C terminus J162_01999 PF07670 Nucleoside recognition J162_01999 PF02421 Ferrous iron transport protein B J162_02002 PF00155 Aminotransferase class I and II J162_02003 PF03475 3-alpha domain J162_02003 PF03473 MOSC domain J162_02004 PF05173 Dihydrodipicolinate reductase, C-terminus J162_02004 PF01113 Dihydrodipicolinate reductase, N-terminus J162_02005 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J162_02005 PF00117 Glutamine amidotransferase class-I J162_02007 PF02142 MGS-like domain J162_02007 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J162_02007 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J162_02008 PF03449 Transcription elongation factor, N-terminal J162_02008 PF01272 Transcription elongation factor, GreA/GreB, C-term J162_02010 PF17768 RecJ OB domain J162_02010 PF01368 DHH family J162_02010 PF02272 DHHA1 domain J162_02018 PF04397 LytTr DNA-binding domain J162_02018 PF00072 Response regulator receiver domain J162_02019 PF03462 PCRF domain J162_02019 PF00472 RF-1 domain J162_02020 PF01336 OB-fold nucleic acid binding domain J162_02020 PF00152 tRNA synthetases class II (D, K and N) J162_02021 PF00072 Response regulator receiver domain J162_02022 PF00072 Response regulator receiver domain J162_02022 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_02022 PF01627 Hpt domain J162_02022 PF00512 His Kinase A (phospho-acceptor) domain J162_02023 PF00378 Enoyl-CoA hydratase/isomerase J162_02024 PF00501 AMP-binding enzyme J162_02024 PF13193 AMP-binding enzyme C-terminal domain J162_02026 PF00694 Aconitase C-terminal domain J162_02026 PF00330 Aconitase family (aconitate hydratase) J162_02029 PF00330 Aconitase family (aconitate hydratase) J162_02029 PF11791 Aconitate B N-terminal domain J162_02029 PF06434 Aconitate hydratase 2 N-terminus J162_02030 PF00561 alpha/beta hydrolase fold J162_02031 PF00990 Diguanylate cyclase, GGDEF domain J162_02031 PF00563 EAL domain J162_02031 PF03707 Bacterial signalling protein N terminal repeat J162_02032 PF00072 Response regulator receiver domain J162_02032 PF01339 CheB methylesterase J162_02033 PF03975 CheD chemotactic sensory transduction J162_02034 PF01739 CheR methyltransferase, SAM binding domain J162_02034 PF03705 CheR methyltransferase, all-alpha domain J162_02035 PF02203 Tar ligand binding domain homologue J162_02035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_02035 PF00672 HAMP domain J162_02036 PF02203 Tar ligand binding domain homologue J162_02036 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_02036 PF00672 HAMP domain J162_02037 PF02203 Tar ligand binding domain homologue J162_02037 PF00672 HAMP domain J162_02037 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_02038 PF00672 HAMP domain J162_02038 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_02038 PF02203 Tar ligand binding domain homologue J162_02039 PF02203 Tar ligand binding domain homologue J162_02039 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_02039 PF00672 HAMP domain J162_02040 PF00672 HAMP domain J162_02040 PF02203 Tar ligand binding domain homologue J162_02040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_02041 PF00672 HAMP domain J162_02041 PF02203 Tar ligand binding domain homologue J162_02041 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_02042 PF00672 HAMP domain J162_02042 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_02042 PF02203 Tar ligand binding domain homologue J162_02045 PF02203 Tar ligand binding domain homologue J162_02045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_02045 PF00672 HAMP domain J162_02046 PF17200 Single Cache domain 2 J162_02046 PF17200 Single Cache domain 2 J162_02046 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_02046 PF00672 HAMP domain J162_02046 PF00672 HAMP domain J162_02046 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_02048 PF02203 Tar ligand binding domain homologue J162_02048 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_02048 PF00672 HAMP domain J162_02049 PF01584 CheW-like domain J162_02049 PF02895 Signal transducing histidine kinase, homodimeric domain J162_02049 PF09078 CheY binding J162_02049 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_02049 PF01627 Hpt domain J162_02050 PF00072 Response regulator receiver domain J162_02052 PF01584 CheW-like domain J162_02053 PF13614 AAA domain J162_02054 PF00691 OmpA family J162_02054 PF13677 Membrane MotB of proton-channel complex MotA/MotB J162_02055 PF01618 MotA/TolQ/ExbB proton channel family J162_02058 PF00069 Protein kinase domain J162_02058 PF03793 PASTA domain J162_02068 PF01527 Transposase J162_02074 PF04055 Radical SAM superfamily J162_02074 PF13186 Iron-sulfur cluster-binding domain J162_02077 PF01627 Hpt domain J162_02077 PF07194 P2 response regulator binding domain J162_02077 PF02895 Signal transducing histidine kinase, homodimeric domain J162_02077 PF01584 CheW-like domain J162_02077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_02078 PF04344 Chemotaxis phosphatase, CheZ J162_02079 PF00072 Response regulator receiver domain J162_02080 PF04542 Sigma-70 region 2 J162_02080 PF04539 Sigma-70 region 3 J162_02080 PF04545 Sigma-70, region 4 J162_02081 PF10609 NUBPL iron-transfer P-loop NTPase J162_02082 PF00448 SRP54-type protein, GTPase domain J162_02083 PF00771 FHIPEP family J162_02084 PF01312 FlhB HrpN YscU SpaS Family J162_02085 PF03707 Bacterial signalling protein N terminal repeat J162_02085 PF00990 Diguanylate cyclase, GGDEF domain J162_02085 PF00563 EAL domain J162_02086 PF03707 Bacterial signalling protein N terminal repeat J162_02086 PF00990 Diguanylate cyclase, GGDEF domain J162_02086 PF00563 EAL domain J162_02086 PF13188 PAS domain J162_02087 PF00990 Diguanylate cyclase, GGDEF domain J162_02087 PF03707 Bacterial signalling protein N terminal repeat J162_02087 PF00563 EAL domain J162_02087 PF13188 PAS domain J162_02088 PF01311 Bacterial export proteins, family 1 J162_02089 PF01313 Bacterial export proteins, family 3 J162_02091 PF00813 FliP family J162_02092 PF04347 Flagellar biosynthesis protein, FliO J162_02093 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J162_02094 PF02154 Flagellar motor switch protein FliM J162_02094 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J162_02098 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J162_02098 PF18269 T3SS EscN ATPase C-terminal domain J162_02100 PF01706 FliG C-terminal domain J162_02100 PF14841 FliG middle domain J162_02100 PF14842 FliG N-terminal domain J162_02101 PF08345 Flagellar M-ring protein C-terminal J162_02101 PF01514 Secretory protein of YscJ/FliF family J162_02102 PF02049 Flagellar hook-basal body complex protein FliE J162_02103 PF00534 Glycosyl transferases group 1 J162_02103 PF00535 Glycosyl transferase family 2 J162_02111 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J162_02111 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J162_02113 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J162_02114 PF00158 Sigma-54 interaction domain J162_02114 PF02954 Bacterial regulatory protein, Fis family J162_02114 PF00072 Response regulator receiver domain J162_02115 PF01339 CheB methylesterase J162_02115 PF00072 Response regulator receiver domain J162_02116 PF00309 Sigma-54 factor, Activator interacting domain (AID) J162_02116 PF04963 Sigma-54 factor, core binding domain J162_02116 PF04552 Sigma-54, DNA binding domain J162_02117 PF00072 Response regulator receiver domain J162_02117 PF00196 Bacterial regulatory proteins, luxR family J162_02120 PF02561 Flagellar protein FliS J162_02121 PF07195 Flagellar hook-associated protein 2 C-terminus J162_02121 PF02465 Flagellar hook-associated protein 2 N-terminus J162_02121 PF07196 Flagellin hook IN motif J162_02122 PF00700 Bacterial flagellin C-terminal helical region J162_02122 PF00669 Bacterial flagellin N-terminal helical region J162_02123 PF00669 Bacterial flagellin N-terminal helical region J162_02123 PF00700 Bacterial flagellin C-terminal helical region J162_02124 PF07196 Flagellin hook IN motif J162_02124 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J162_02125 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J162_02125 PF10135 Rod binding protein J162_02126 PF02119 Flagellar P-ring protein J162_02127 PF02107 Flagellar L-ring protein J162_02128 PF00460 Flagella basal body rod protein J162_02128 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J162_02129 PF00460 Flagella basal body rod protein J162_02129 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J162_02130 PF07559 Flagellar basal body protein FlaE J162_02130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J162_02130 PF00460 Flagella basal body rod protein J162_02131 PF03963 Flagellar hook capping protein - N-terminal region J162_02132 PF00460 Flagella basal body rod protein J162_02132 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J162_02134 PF00072 Response regulator receiver domain J162_02134 PF01584 CheW-like domain J162_02138 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_02138 PF00989 PAS fold J162_02138 PF13188 PAS domain J162_02138 PF13426 PAS domain J162_02138 PF00512 His Kinase A (phospho-acceptor) domain J162_02139 PF00990 Diguanylate cyclase, GGDEF domain J162_02139 PF03707 Bacterial signalling protein N terminal repeat J162_02139 PF00563 EAL domain J162_02140 PF07730 Histidine kinase J162_02140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_02141 PF00563 EAL domain J162_02141 PF00990 Diguanylate cyclase, GGDEF domain J162_02141 PF03707 Bacterial signalling protein N terminal repeat J162_02143 PF00672 HAMP domain J162_02143 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_02143 PF12729 Four helix bundle sensory module for signal transduction J162_02144 PF04356 Protein of unknown function (DUF489) J162_02146 PF00293 NUDIX domain J162_02147 PF02617 ATP-dependent Clp protease adaptor protein ClpS J162_02148 PF07724 AAA domain (Cdc48 subfamily) J162_02148 PF10431 C-terminal, D2-small domain, of ClpB protein J162_02148 PF02861 Clp amino terminal domain, pathogenicity island component J162_02148 PF17871 AAA lid domain J162_02148 PF00004 ATPase family associated with various cellular activities (AAA) J162_02149 PF01176 Translation initiation factor 1A / IF-1 J162_02150 PF03588 Leucyl/phenylalanyl-tRNA protein transferase J162_02152 PF07992 Pyridine nucleotide-disulphide oxidoreductase J162_02153 PF09397 Ftsk gamma domain J162_02153 PF01580 FtsK/SpoIIIE family J162_02153 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J162_02153 PF17854 FtsK alpha domain J162_02155 PF03548 Outer membrane lipoprotein carrier protein LolA J162_02157 PF12002 MgsA AAA+ ATPase C terminal J162_02157 PF16193 AAA C-terminal domain J162_02157 PF00004 ATPase family associated with various cellular activities (AAA) J162_02159 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J162_02161 PF02803 Thiolase, C-terminal domain J162_02161 PF00108 Thiolase, N-terminal domain J162_02162 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J162_02162 PF00378 Enoyl-CoA hydratase/isomerase J162_02162 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J162_02164 PF00334 Nucleoside diphosphate kinase J162_02165 PF04055 Radical SAM superfamily J162_02167 PF13464 Domain of unknown function (DUF4115) J162_02169 PF01011 PQQ enzyme repeat J162_02169 PF13360 PQQ-like domain J162_02170 PF01926 50S ribosome-binding GTPase J162_02170 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J162_02171 PF03453 MoeA N-terminal region (domain I and II) J162_02171 PF03454 MoeA C-terminal region (domain IV) J162_02171 PF00994 Probable molybdopterin binding domain J162_02172 PF00899 ThiF family J162_02177 PF00107 Zinc-binding dehydrogenase J162_02177 PF13823 Alcohol dehydrogenase GroES-associated J162_02177 PF08240 Alcohol dehydrogenase GroES-like domain J162_02179 PF03372 Endonuclease/Exonuclease/phosphatase family J162_02181 PF03453 MoeA N-terminal region (domain I and II) J162_02181 PF03454 MoeA C-terminal region (domain IV) J162_02181 PF00994 Probable molybdopterin binding domain J162_02182 PF12804 MobA-like NTP transferase domain J162_02184 PF00561 alpha/beta hydrolase fold J162_02185 PF01566 Natural resistance-associated macrophage protein J162_02186 PF01325 Iron dependent repressor, N-terminal DNA binding domain J162_02186 PF02742 Iron dependent repressor, metal binding and dimerisation domain J162_02187 PF14437 MafB19-like deaminase J162_02188 PF00929 Exonuclease J162_02189 PF05552 Conserved TM helix J162_02189 PF00924 Mechanosensitive ion channel J162_02190 PF00391 PEP-utilising enzyme, mobile domain J162_02190 PF02896 PEP-utilising enzyme, TIM barrel domain J162_02190 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J162_02191 PF03618 Kinase/pyrophosphorylase J162_02195 PF01066 CDP-alcohol phosphatidyltransferase J162_02197 PF00561 alpha/beta hydrolase fold J162_02200 PF00355 Rieske [2Fe-2S] domain J162_02200 PF01266 FAD dependent oxidoreductase J162_02202 PF09371 Tex-like protein N-terminal domain J162_02202 PF16921 Tex protein YqgF-like domain J162_02202 PF17674 HHH domain J162_02202 PF00575 S1 RNA binding domain J162_02203 PF00072 Response regulator receiver domain J162_02203 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_02203 PF00512 His Kinase A (phospho-acceptor) domain J162_02203 PF09308 LuxQ, periplasmic J162_02211 PF00034 Cytochrome c J162_02213 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J162_02214 PF00873 AcrB/AcrD/AcrF family J162_02215 PF00873 AcrB/AcrD/AcrF family J162_02216 PF01081 KDPG and KHG aldolase J162_02217 PF00920 Dehydratase family J162_02218 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J162_02219 PF02685 Glucokinase J162_02220 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J162_02220 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J162_02221 PF00005 ABC transporter J162_02221 PF17912 MalK OB fold domain J162_02224 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J162_02225 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J162_02226 PF00890 FAD binding domain J162_02226 PF02910 Fumarate reductase flavoprotein C-term J162_02228 PF13085 2Fe-2S iron-sulfur cluster binding domain J162_02229 PF03937 Flavinator of succinate dehydrogenase J162_02231 PF02687 FtsX-like permease family J162_02231 PF12704 MacB-like periplasmic core domain J162_02232 PF00005 ABC transporter J162_02234 PF00753 Metallo-beta-lactamase superfamily J162_02234 PF03772 Competence protein J162_02235 PF01618 MotA/TolQ/ExbB proton channel family J162_02237 PF00005 ABC transporter J162_02237 PF00664 ABC transporter transmembrane region J162_02238 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J162_02239 PF02348 Cytidylyltransferase J162_02240 PF01451 Low molecular weight phosphotyrosine protein phosphatase J162_02242 PF02151 UvrB/uvrC motif J162_02242 PF01541 GIY-YIG catalytic domain J162_02242 PF08459 UvrC Helix-hairpin-helix N-terminal J162_02243 PF01066 CDP-alcohol phosphatidyltransferase J162_02247 PF00550 Phosphopantetheine attachment site J162_02247 PF00668 Condensation domain J162_02247 PF00501 AMP-binding enzyme J162_02247 PF13193 AMP-binding enzyme C-terminal domain J162_02248 PF00975 Thioesterase domain J162_02248 PF00668 Condensation domain J162_02248 PF13193 AMP-binding enzyme C-terminal domain J162_02248 PF00501 AMP-binding enzyme J162_02248 PF00550 Phosphopantetheine attachment site J162_02250 PF01527 Transposase J162_02252 PF01527 Transposase J162_02253 PF00589 Phage integrase family J162_02255 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J162_02255 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J162_02255 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J162_02257 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J162_02260 PF00072 Response regulator receiver domain J162_02260 PF00196 Bacterial regulatory proteins, luxR family J162_02261 PF10150 Ribonuclease E/G family J162_02261 PF00575 S1 RNA binding domain J162_02261 PF12111 Polyribonucleotide phosphorylase C terminal J162_02262 PF01479 S4 domain J162_02262 PF00849 RNA pseudouridylate synthase J162_02263 PF11737 Protein of unknown function (DUF3300) J162_02264 PF02535 ZIP Zinc transporter J162_02266 PF01329 Pterin 4 alpha carbinolamine dehydratase J162_02267 PF01106 NifU-like domain J162_02276 PF08241 Methyltransferase domain J162_02276 PF12697 Alpha/beta hydrolase family J162_02278 PF00106 short chain dehydrogenase J162_02282 PF01527 Transposase J162_02283 PF01494 FAD binding domain J162_02284 PF09335 SNARE associated Golgi protein J162_02286 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J162_02287 PF07995 Glucose / Sorbosone dehydrogenase J162_02289 PF00144 Beta-lactamase J162_02290 PF04397 LytTr DNA-binding domain J162_02290 PF00072 Response regulator receiver domain J162_02291 PF06580 Histidine kinase J162_02291 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_02291 PF07694 5TMR of 5TMR-LYT J162_02293 PF00082 Subtilase family J162_02293 PF03797 Autotransporter beta-domain J162_02294 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J162_02295 PF00873 AcrB/AcrD/AcrF family J162_02297 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_02297 PF00512 His Kinase A (phospho-acceptor) domain J162_02297 PF08448 PAS fold J162_02297 PF00072 Response regulator receiver domain J162_02297 PF13426 PAS domain J162_02298 PF00196 Bacterial regulatory proteins, luxR family J162_02298 PF00072 Response regulator receiver domain J162_02299 PF12951 Passenger-associated-transport-repeat J162_02299 PF12951 Passenger-associated-transport-repeat J162_02300 PF00563 EAL domain J162_02300 PF08447 PAS fold J162_02300 PF00990 Diguanylate cyclase, GGDEF domain J162_02300 PF08448 PAS fold J162_02303 PF05974 Domain of unknown function (DUF892) J162_02305 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J162_02307 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J162_02307 PF14824 Sirohaem biosynthesis protein central J162_02307 PF10414 Sirohaem synthase dimerisation region J162_02310 PF05977 Transmembrane secretion effector J162_02311 PF07969 Amidohydrolase family J162_02313 PF00857 Isochorismatase family J162_02316 PF00072 Response regulator receiver domain J162_02316 PF00196 Bacterial regulatory proteins, luxR family J162_02319 PF03466 LysR substrate binding domain J162_02319 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_02320 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus J162_02320 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J162_02320 PF00361 Proton-conducting membrane transporter J162_02321 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) J162_02323 PF01527 Transposase J162_02324 PF01381 Helix-turn-helix J162_02325 PF05284 Protein of unknown function (DUF736) J162_02326 PF04002 RadC-like JAB domain J162_02331 PF00589 Phage integrase family J162_02331 PF13356 Arm DNA-binding domain J162_02334 PF07715 TonB-dependent Receptor Plug Domain J162_02334 PF00593 TonB dependent receptor J162_02338 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin J162_02343 PF07715 TonB-dependent Receptor Plug Domain J162_02343 PF00593 TonB dependent receptor J162_02346 PF10947 Protein of unknown function (DUF2628) J162_02348 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) J162_02348 PF00722 Glycosyl hydrolases family 16 J162_02353 PF03412 Peptidase C39 family J162_02353 PF00664 ABC transporter transmembrane region J162_02353 PF00005 ABC transporter J162_02355 PF13614 AAA domain J162_02363 PF01131 DNA topoisomerase J162_02363 PF01751 Toprim domain J162_02364 PF01751 Toprim domain J162_02364 PF01131 DNA topoisomerase J162_02365 PF00145 C-5 cytosine-specific DNA methylase J162_02377 PF17761 DUF1016 N-terminal domain J162_02377 PF06250 YhcG PDDEXK nuclease domain J162_02378 PF01527 Transposase J162_02380 PF00892 EamA-like transporter family J162_02381 PF00892 EamA-like transporter family J162_02383 PF02525 Flavodoxin-like fold J162_02384 PF02798 Glutathione S-transferase, N-terminal domain J162_02384 PF00043 Glutathione S-transferase, C-terminal domain J162_02385 PF05544 Proline racemase J162_02386 PF03358 NADPH-dependent FMN reductase J162_02388 PF07690 Major Facilitator Superfamily J162_02389 PF12833 Helix-turn-helix domain J162_02389 PF02311 AraC-like ligand binding domain J162_02419 PF12462 DNA helicase IV / RNA helicase N terminal J162_02419 PF00580 UvrD/REP helicase N-terminal domain J162_02419 PF13361 UvrD-like helicase C-terminal domain J162_02434 PF03466 LysR substrate binding domain J162_02434 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_02435 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J162_02435 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J162_02436 PF03401 Tripartite tricarboxylate transporter family receptor J162_02440 PF04002 RadC-like JAB domain J162_02447 PF00589 Phage integrase family J162_02447 PF13356 Arm DNA-binding domain J162_02448 PF00958 GMP synthase C terminal domain J162_02448 PF00117 Glutamine amidotransferase class-I J162_02448 PF02540 NAD synthase J162_02449 PF00571 CBS domain J162_02449 PF00478 IMP dehydrogenase / GMP reductase domain J162_02450 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J162_02450 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J162_02452 PF00999 Sodium/hydrogen exchanger family J162_02452 PF02254 TrkA-N domain J162_02453 PF00483 Nucleotidyl transferase J162_02454 PF02719 Polysaccharide biosynthesis protein J162_02455 PF00953 Glycosyl transferase family 4 J162_02456 PF18073 Rubredoxin metal binding domain J162_02458 PF00216 Bacterial DNA-binding protein J162_02459 PF00575 S1 RNA binding domain J162_02460 PF02224 Cytidylate kinase J162_02461 PF00444 Ribosomal protein L36 J162_02464 PF04371 Porphyromonas-type peptidyl-arginine deiminase J162_02465 PF00795 Carbon-nitrogen hydrolase J162_02470 PF00528 Binding-protein-dependent transport system inner membrane component J162_02471 PF00528 Binding-protein-dependent transport system inner membrane component J162_02475 PF00356 Bacterial regulatory proteins, lacI family J162_02477 PF03795 YCII-related domain J162_02478 PF02616 Segregation and condensation protein ScpA J162_02479 PF04079 Segregation and condensation complex subunit ScpB J162_02480 PF00849 RNA pseudouridylate synthase J162_02480 PF01479 S4 domain J162_02483 PF00795 Carbon-nitrogen hydrolase J162_02484 PF00155 Aminotransferase class I and II J162_02485 PF00005 ABC transporter J162_02486 PF03379 CcmB protein J162_02487 PF01578 Cytochrome C assembly protein J162_02489 PF03100 CcmE J162_02490 PF01578 Cytochrome C assembly protein J162_02490 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J162_02491 PF08534 Redoxin J162_02492 PF03918 Cytochrome C biogenesis protein J162_02494 PF00561 alpha/beta hydrolase fold J162_02495 PF00313 'Cold-shock' DNA-binding domain J162_02496 PF00005 ABC transporter J162_02496 PF00664 ABC transporter transmembrane region J162_02497 PF00005 ABC transporter J162_02497 PF00664 ABC transporter transmembrane region J162_02498 PF01654 Cytochrome bd terminal oxidase subunit I J162_02499 PF02322 Cytochrome bd terminal oxidase subunit II J162_02503 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J162_02503 PF02129 X-Pro dipeptidyl-peptidase (S15 family) J162_02504 PF00171 Aldehyde dehydrogenase family J162_02505 PF01472 PUA domain J162_02505 PF00696 Amino acid kinase family J162_02507 PF00206 Lyase J162_02508 PF01118 Semialdehyde dehydrogenase, NAD binding domain J162_02510 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase J162_02510 PF00696 Amino acid kinase family J162_02513 PF00764 Arginosuccinate synthase J162_02514 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J162_02514 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J162_02516 PF01406 tRNA synthetases class I (C) catalytic domain J162_02516 PF09190 DALR domain J162_02517 PF02657 Fe-S metabolism associated domain J162_02519 PF01258 Prokaryotic dksA/traR C4-type zinc finger J162_02520 PF01809 Putative membrane protein insertion efficiency factor J162_02521 PF01979 Amidohydrolase family J162_02522 PF08460 Bacterial SH3 domain J162_02522 PF01551 Peptidase family M23 J162_02525 PF06751 Ethanolamine ammonia lyase large subunit (EutB) J162_02526 PF05985 Ethanolamine ammonia-lyase light chain (EutC) J162_02528 PF00753 Metallo-beta-lactamase superfamily J162_02532 PF01527 Transposase J162_02535 PF00295 Glycosyl hydrolases family 28 J162_02537 PF13419 Haloacid dehalogenase-like hydrolase J162_02539 PF01979 Amidohydrolase family J162_02541 PF09285 Elongation factor P, C-terminal J162_02541 PF01132 Elongation factor P (EF-P) OB domain J162_02541 PF08207 Elongation factor P (EF-P) KOW-like domain J162_02542 PF04055 Radical SAM superfamily J162_02543 PF00563 EAL domain J162_02543 PF03707 Bacterial signalling protein N terminal repeat J162_02543 PF00990 Diguanylate cyclase, GGDEF domain J162_02543 PF13188 PAS domain J162_02545 PF00588 SpoU rRNA Methylase family J162_02546 PF00459 Inositol monophosphatase family J162_02547 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J162_02547 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J162_02548 PF00545 ribonuclease J162_02551 PF00271 Helicase conserved C-terminal domain J162_02551 PF00270 DEAD/DEAH box helicase J162_02551 PF03880 DbpA RNA binding domain J162_02552 PF00156 Phosphoribosyl transferase domain J162_02553 PF02696 Uncharacterized ACR, YdiU/UPF0061 family J162_02554 PF00135 Carboxylesterase family J162_02555 PF14497 Glutathione S-transferase, C-terminal domain J162_02555 PF02798 Glutathione S-transferase, N-terminal domain J162_02556 PF00313 'Cold-shock' DNA-binding domain J162_02557 PF07152 YaeQ protein J162_02559 PF00072 Response regulator receiver domain J162_02559 PF00563 EAL domain J162_02559 PF00990 Diguanylate cyclase, GGDEF domain J162_02560 PF01435 Peptidase family M48 J162_02561 PF00749 tRNA synthetases class I (E and Q), catalytic domain J162_02562 PF00106 short chain dehydrogenase J162_02563 PF05233 PHB accumulation regulatory domain J162_02563 PF07879 PHB/PHA accumulation regulator DNA-binding domain J162_02566 PF01119 DNA mismatch repair protein, C-terminal domain J162_02566 PF08676 MutL C terminal dimerisation domain J162_02567 PF01520 N-acetylmuramoyl-L-alanine amidase J162_02567 PF11741 AMIN domain J162_02568 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J162_02569 PF03853 YjeF-related protein N-terminus J162_02569 PF01256 Carbohydrate kinase J162_02570 PF08331 Domain of unknown function (DUF1730) J162_02571 PF02601 Exonuclease VII, large subunit J162_02571 PF13742 OB-fold nucleic acid binding domain J162_02573 PF03781 Sulfatase-modifying factor enzyme 1 J162_02574 PF01612 3'-5' exonuclease J162_02574 PF00570 HRDC domain J162_02576 PF01068 ATP dependent DNA ligase domain J162_02576 PF04679 ATP dependent DNA ligase C terminal region J162_02576 PF13298 DNA polymerase Ligase (LigD) J162_02580 PF00589 Phage integrase family J162_02584 PF05598 Transposase domain (DUF772) J162_02586 PF01527 Transposase J162_02590 PF01619 Proline dehydrogenase J162_02590 PF00171 Aldehyde dehydrogenase family J162_02590 PF14850 DNA-binding domain of Proline dehydrogenase J162_02590 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J162_02592 PF01527 Transposase J162_02594 PF13276 HTH-like domain J162_02594 PF00665 Integrase core domain J162_02594 PF13333 Integrase core domain J162_02596 PF00239 Resolvase, N terminal domain J162_02596 PF02796 Helix-turn-helix domain of resolvase J162_02599 PF02384 N-6 DNA Methylase J162_02600 PF09572 XamI restriction endonuclease J162_02612 PF01584 CheW-like domain J162_02613 PF12729 Four helix bundle sensory module for signal transduction J162_02613 PF00672 HAMP domain J162_02613 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_02614 PF02245 Methylpurine-DNA glycosylase (MPG) J162_02615 PF00270 DEAD/DEAH box helicase J162_02615 PF08494 DEAD/H associated J162_02615 PF00271 Helicase conserved C-terminal domain J162_02618 PF04386 Stringent starvation protein B J162_02619 PF00043 Glutathione S-transferase, C-terminal domain J162_02619 PF02798 Glutathione S-transferase, N-terminal domain J162_02620 PF02167 Cytochrome C1 family J162_02621 PF00033 Cytochrome b/b6/petB J162_02621 PF00032 Cytochrome b(C-terminal)/b6/petD J162_02622 PF00355 Rieske [2Fe-2S] domain J162_02622 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal J162_02623 PF01464 Transglycosylase SLT domain J162_02626 PF01938 TRAM domain J162_02626 PF04055 Radical SAM superfamily J162_02626 PF00919 Uncharacterized protein family UPF0004 J162_02627 PF02562 PhoH-like protein J162_02629 PF02130 Uncharacterized protein family UPF0054 J162_02631 PF03471 Transporter associated domain J162_02631 PF00571 CBS domain J162_02634 PF00171 Aldehyde dehydrogenase family J162_02635 PF00528 Binding-protein-dependent transport system inner membrane component J162_02636 PF00528 Binding-protein-dependent transport system inner membrane component J162_02637 PF08402 TOBE domain J162_02637 PF00005 ABC transporter J162_02638 PF02321 Outer membrane efflux protein J162_02639 PF07690 Major Facilitator Superfamily J162_02640 PF13533 Biotin-lipoyl like J162_02641 PF13416 Bacterial extracellular solute-binding protein J162_02642 PF00202 Aminotransferase class-III J162_02643 PF00120 Glutamine synthetase, catalytic domain J162_02644 PF07722 Peptidase C26 J162_02645 PF00120 Glutamine synthetase, catalytic domain J162_02646 PF01266 FAD dependent oxidoreductase J162_02647 PF00990 Diguanylate cyclase, GGDEF domain J162_02647 PF00072 Response regulator receiver domain J162_02648 PF01814 Hemerythrin HHE cation binding domain J162_02649 PF00083 Sugar (and other) transporter J162_02649 PF07690 Major Facilitator Superfamily J162_02651 PF00384 Molybdopterin oxidoreductase J162_02652 PF02634 FdhD/NarQ family J162_02653 PF07690 Major Facilitator Superfamily J162_02654 PF00202 Aminotransferase class-III J162_02656 PF04286 Protein of unknown function (DUF445) J162_02657 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J162_02657 PF00072 Response regulator receiver domain J162_02657 PF01627 Hpt domain J162_02657 PF00512 His Kinase A (phospho-acceptor) domain J162_02657 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_02657 PF00672 HAMP domain J162_02658 PF00072 Response regulator receiver domain J162_02659 PF07690 Major Facilitator Superfamily J162_02660 PF05088 Bacterial NAD-glutamate dehydrogenase J162_02662 PF00529 HlyD membrane-fusion protein of T1SS J162_02662 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J162_02663 PF00873 AcrB/AcrD/AcrF family J162_02664 PF00356 Bacterial regulatory proteins, lacI family J162_02665 PF02896 PEP-utilising enzyme, TIM barrel domain J162_02665 PF00391 PEP-utilising enzyme, mobile domain J162_02665 PF05524 PEP-utilising enzyme, N-terminal J162_02665 PF00381 PTS HPr component phosphorylation site J162_02665 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J162_02666 PF00294 pfkB family carbohydrate kinase J162_02667 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J162_02675 PF02355 Protein export membrane protein J162_02675 PF07549 SecD/SecF GG Motif J162_02676 PF13721 SecD export protein N-terminal TM region J162_02676 PF02355 Protein export membrane protein J162_02676 PF07549 SecD/SecF GG Motif J162_02677 PF02699 Preprotein translocase subunit J162_02678 PF01702 Queuine tRNA-ribosyltransferase J162_02679 PF02547 Queuosine biosynthesis protein J162_02688 PF02927 Cellulase N-terminal ig-like domain J162_02688 PF00759 Glycosyl hydrolase family 9 J162_02690 PF00037 4Fe-4S binding domain J162_02693 PF01467 Cytidylyltransferase-like J162_02695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_02695 PF00183 Hsp90 protein J162_02699 PF00593 TonB dependent receptor J162_02699 PF07715 TonB-dependent Receptor Plug Domain J162_02701 PF04616 Glycosyl hydrolases family 43 J162_02702 PF07532 Bacterial Ig-like domain (group 4) J162_02703 PF00593 TonB dependent receptor J162_02703 PF07715 TonB-dependent Receptor Plug Domain J162_02705 PF00082 Subtilase family J162_02705 PF09286 Pro-kumamolisin, activation domain J162_02711 PF13520 Amino acid permease J162_02714 PF00557 Metallopeptidase family M24 J162_02714 PF01321 Creatinase/Prolidase N-terminal domain J162_02715 PF00171 Aldehyde dehydrogenase family J162_02716 PF00701 Dihydrodipicolinate synthetase family J162_02717 PF04324 BFD-like [2Fe-2S] binding domain J162_02717 PF07992 Pyridine nucleotide-disulphide oxidoreductase J162_02719 PF01266 FAD dependent oxidoreductase J162_02720 PF05544 Proline racemase J162_02722 PF00448 SRP54-type protein, GTPase domain J162_02722 PF02881 SRP54-type protein, helical bundle domain J162_02723 PF00730 HhH-GPD superfamily base excision DNA repair protein J162_02723 PF00633 Helix-hairpin-helix motif J162_02723 PF10576 Iron-sulfur binding domain of endonuclease III J162_02723 PF14815 NUDIX domain J162_02724 PF04362 Bacterial Fe(2+) trafficking J162_02725 PF00072 Response regulator receiver domain J162_02725 PF13426 PAS domain J162_02725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_02731 PF08212 Lipocalin-like domain J162_02733 PF02770 Acyl-CoA dehydrogenase, middle domain J162_02733 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J162_02733 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J162_02733 PF12806 Acetyl-CoA dehydrogenase C-terminal like J162_02735 PF02779 Transketolase, pyrimidine binding domain J162_02735 PF02780 Transketolase, C-terminal domain J162_02735 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J162_02739 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family J162_02740 PF00753 Metallo-beta-lactamase superfamily J162_02740 PF16123 Hydroxyacylglutathione hydrolase C-terminus J162_02741 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J162_02741 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J162_02744 PF03808 Glycosyl transferase WecB/TagA/CpsF family J162_02747 PF14667 Polysaccharide biosynthesis C-terminal domain J162_02749 PF00534 Glycosyl transferases group 1 J162_02749 PF13439 Glycosyltransferase Family 4 J162_02753 PF02397 Bacterial sugar transferase J162_02757 PF13411 MerR HTH family regulatory protein J162_02758 PF00216 Bacterial DNA-binding protein J162_02759 PF03147 Ferredoxin-fold anticodon binding domain J162_02759 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J162_02759 PF03483 B3/4 domain J162_02759 PF03484 tRNA synthetase B5 domain J162_02759 PF01588 Putative tRNA binding domain J162_02760 PF01409 tRNA synthetases class II core domain (F) J162_02760 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J162_02761 PF00453 Ribosomal protein L20 J162_02762 PF01632 Ribosomal protein L35 J162_02764 PF05198 Translation initiation factor IF-3, N-terminal domain J162_02764 PF00707 Translation initiation factor IF-3, C-terminal domain J162_02765 PF03129 Anticodon binding domain J162_02765 PF02824 TGS domain J162_02765 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J162_02765 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J162_02766 PF00356 Bacterial regulatory proteins, lacI family J162_02767 PF00686 Starch binding domain J162_02767 PF00128 Alpha amylase, catalytic domain J162_02768 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J162_02770 PF14508 Glycosyl-hydrolase 97 N-terminal J162_02770 PF10566 Glycoside hydrolase 97 J162_02770 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation J162_02774 PF00128 Alpha amylase, catalytic domain J162_02775 PF01527 Transposase J162_02784 PF03135 CagE, TrbE, VirB family, component of type IV transporter system J162_02785 PF05101 Type IV secretory pathway, VirB3-like protein J162_02787 PF01464 Transglycosylase SLT domain J162_02788 PF00437 Type II/IV secretion system protein J162_02789 PF03743 Bacterial conjugation TrbI-like protein J162_02793 PF02534 Type IV secretory system Conjugative DNA transfer J162_02796 PF17757 UvrB interaction domain J162_02796 PF00271 Helicase conserved C-terminal domain J162_02796 PF04851 Type III restriction enzyme, res subunit J162_02796 PF02151 UvrB/uvrC motif J162_02796 PF12344 Ultra-violet resistance protein B J162_02804 PF01527 Transposase J162_02811 PF01555 DNA methylase J162_02821 PF00182 Chitinase class I J162_02832 PF01527 Transposase J162_02833 PF07963 Prokaryotic N-terminal methylation motif J162_02833 PF00114 Pilin (bacterial filament) J162_02834 PF05567 Neisseria PilC beta-propeller domain J162_02837 PF07694 5TMR of 5TMR-LYT J162_02837 PF06580 Histidine kinase J162_02837 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_02838 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases J162_02838 PF03641 Possible lysine decarboxylase J162_02838 PF11892 Domain of unknown function (DUF3412) J162_02839 PF00593 TonB dependent receptor J162_02840 PF01914 MarC family integral membrane protein J162_02842 PF00462 Glutaredoxin J162_02843 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J162_02843 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J162_02844 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J162_02844 PF02222 ATP-grasp domain J162_02845 PF00731 AIR carboxylase J162_02847 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain J162_02847 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain J162_02849 PF00013 KH domain J162_02849 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J162_02849 PF01138 3' exoribonuclease family, domain 1 J162_02849 PF03725 3' exoribonuclease family, domain 2 J162_02849 PF00575 S1 RNA binding domain J162_02850 PF00312 Ribosomal protein S15 J162_02851 PF09157 Pseudouridine synthase II TruB, C-terminal J162_02851 PF16198 tRNA pseudouridylate synthase B C-terminal domain J162_02851 PF01509 TruB family pseudouridylate synthase (N terminal domain) J162_02852 PF02033 Ribosome-binding factor A J162_02853 PF00009 Elongation factor Tu GTP binding domain J162_02853 PF11987 Translation-initiation factor 2 J162_02853 PF08364 Bacterial translation initiation factor IF-2 associated region J162_02853 PF04760 Translation initiation factor IF-2, N-terminal region J162_02854 PF13184 NusA-like KH domain J162_02854 PF08529 NusA N-terminal domain J162_02854 PF00575 S1 RNA binding domain J162_02855 PF02576 RimP N-terminal domain J162_02855 PF17384 RimP C-terminal SH3 domain J162_02857 PF00361 Proton-conducting membrane transporter J162_02858 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus J162_02858 PF00361 Proton-conducting membrane transporter J162_02859 PF00361 Proton-conducting membrane transporter J162_02859 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J162_02860 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J162_02861 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 J162_02862 PF12838 4Fe-4S dicluster domain J162_02863 PF00146 NADH dehydrogenase J162_02864 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J162_02864 PF00384 Molybdopterin oxidoreductase J162_02864 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal J162_02865 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J162_02865 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J162_02865 PF10531 SLBB domain J162_02867 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit J162_02868 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit J162_02869 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit J162_02870 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 J162_02873 PF00121 Triosephosphate isomerase J162_02874 PF00106 short chain dehydrogenase J162_02877 PF03707 Bacterial signalling protein N terminal repeat J162_02877 PF00990 Diguanylate cyclase, GGDEF domain J162_02877 PF00563 EAL domain J162_02880 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J162_02880 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J162_02880 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J162_02880 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J162_02881 PF17848 Acetyl-coA carboxylase zinc finger domain J162_02881 PF01039 Carboxyl transferase domain J162_02882 PF00290 Tryptophan synthase alpha chain J162_02884 PF00291 Pyridoxal-phosphate dependent enzyme J162_02885 PF03466 LysR substrate binding domain J162_02885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_02886 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase J162_02887 PF01416 tRNA pseudouridine synthase J162_02891 PF02774 Semialdehyde dehydrogenase, dimerisation domain J162_02891 PF01118 Semialdehyde dehydrogenase, NAD binding domain J162_02892 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J162_02892 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J162_02893 PF01264 Chorismate synthase J162_02894 PF05175 Methyltransferase small domain J162_02895 PF02630 SCO1/SenC J162_02896 PF02666 Phosphatidylserine decarboxylase J162_02898 PF05872 Bacterial protein of unknown function (DUF853) J162_02899 PF00293 NUDIX domain J162_02902 PF01272 Transcription elongation factor, GreA/GreB, C-term J162_02902 PF03449 Transcription elongation factor, N-terminal J162_02903 PF04055 Radical SAM superfamily J162_02903 PF00919 Uncharacterized protein family UPF0004 J162_02903 PF18693 TRAM domain J162_02904 PF01738 Dienelactone hydrolase family J162_02908 PF00692 dUTPase J162_02909 PF10609 NUBPL iron-transfer P-loop NTPase J162_02910 PF00593 TonB dependent receptor J162_02910 PF07715 TonB-dependent Receptor Plug Domain J162_02913 PF05649 Peptidase family M13 J162_02913 PF01431 Peptidase family M13 J162_02914 PF05649 Peptidase family M13 J162_02914 PF01431 Peptidase family M13 J162_02917 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J162_02918 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J162_02918 PF07992 Pyridine nucleotide-disulphide oxidoreductase J162_02919 PF01266 FAD dependent oxidoreductase J162_02920 PF04235 Protein of unknown function (DUF418) J162_02921 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J162_02922 PF00877 NlpC/P60 family J162_02923 PF00877 NlpC/P60 family J162_02926 PF00375 Sodium:dicarboxylate symporter family J162_02927 PF00245 Alkaline phosphatase J162_02928 PF01171 PP-loop family J162_02928 PF09179 TilS substrate binding domain J162_02928 PF11734 TilS substrate C-terminal domain J162_02929 PF02609 Exonuclease VII small subunit J162_02930 PF00348 Polyprenyl synthetase J162_02931 PF14521 Lysine-specific metallo-endopeptidase J162_02933 PF01523 Putative modulator of DNA gyrase J162_02934 PF04751 Protein of unknown function (DUF615) J162_02935 PF01523 Putative modulator of DNA gyrase J162_02937 PF13116 Protein of unknown function J162_02937 PF13502 AsmA-like C-terminal region J162_02938 PF10150 Ribonuclease E/G family J162_02938 PF00575 S1 RNA binding domain J162_02939 PF02545 Maf-like protein J162_02940 PF04402 Protein of unknown function (DUF541) J162_02943 PF02590 Predicted SPOUT methyltransferase J162_02946 PF01467 Cytidylyltransferase-like J162_02949 PF00133 tRNA synthetases class I (I, L, M and V) J162_02949 PF13603 Leucyl-tRNA synthetase, Domain 2 J162_02949 PF08264 Anticodon-binding domain of tRNA J162_02951 PF00085 Thioredoxin J162_02956 PF04070 Domain of unknown function (DUF378) J162_02957 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J162_02959 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_02959 PF03466 LysR substrate binding domain J162_02964 PF00664 ABC transporter transmembrane region J162_02964 PF00005 ABC transporter J162_02967 PF00873 AcrB/AcrD/AcrF family J162_02970 PF02321 Outer membrane efflux protein J162_02971 PF00486 Transcriptional regulatory protein, C terminal J162_02971 PF00072 Response regulator receiver domain J162_02972 PF00672 HAMP domain J162_02972 PF00512 His Kinase A (phospho-acceptor) domain J162_02972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_02973 PF00999 Sodium/hydrogen exchanger family J162_02974 PF00144 Beta-lactamase J162_02975 PF03737 Aldolase/RraA J162_02978 PF00990 Diguanylate cyclase, GGDEF domain J162_02978 PF00072 Response regulator receiver domain J162_02979 PF00849 RNA pseudouridylate synthase J162_02979 PF01479 S4 domain J162_02980 PF00990 Diguanylate cyclase, GGDEF domain J162_02980 PF08448 PAS fold J162_02980 PF00563 EAL domain J162_02981 PF00270 DEAD/DEAH box helicase J162_02981 PF03880 DbpA RNA binding domain J162_02981 PF00271 Helicase conserved C-terminal domain J162_02991 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J162_02991 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J162_02993 PF00654 Voltage gated chloride channel J162_02994 PF08240 Alcohol dehydrogenase GroES-like domain J162_02994 PF00107 Zinc-binding dehydrogenase J162_02997 PF07715 TonB-dependent Receptor Plug Domain J162_02997 PF00593 TonB dependent receptor J162_02999 PF01483 Proprotein convertase P-domain J162_02999 PF00082 Subtilase family J162_03002 PF00082 Subtilase family J162_03002 PF01483 Proprotein convertase P-domain J162_03004 PF00248 Aldo/keto reductase family J162_03005 PF07690 Major Facilitator Superfamily J162_03006 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_03006 PF03466 LysR substrate binding domain J162_03008 PF06719 AraC-type transcriptional regulator N-terminus J162_03008 PF12833 Helix-turn-helix domain J162_03010 PF16859 Tetracyclin repressor-like, C-terminal domain J162_03010 PF00440 Bacterial regulatory proteins, tetR family J162_03011 PF02321 Outer membrane efflux protein J162_03012 PF00873 AcrB/AcrD/AcrF family J162_03013 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J162_03013 PF00529 HlyD membrane-fusion protein of T1SS J162_03015 PF01475 Ferric uptake regulator family J162_03016 PF00749 tRNA synthetases class I (E and Q), catalytic domain J162_03021 PF06123 Inner membrane protein CreD J162_03023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_03023 PF00672 HAMP domain J162_03023 PF00512 His Kinase A (phospho-acceptor) domain J162_03024 PF00486 Transcriptional regulatory protein, C terminal J162_03024 PF00072 Response regulator receiver domain J162_03025 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ J162_03027 PF17757 UvrB interaction domain J162_03027 PF00271 Helicase conserved C-terminal domain J162_03027 PF00270 DEAD/DEAH box helicase J162_03027 PF03461 TRCF domain J162_03027 PF02559 CarD-like/TRCF domain J162_03034 PF01584 CheW-like domain J162_03034 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_03034 PF01627 Hpt domain J162_03034 PF02895 Signal transducing histidine kinase, homodimeric domain J162_03034 PF09078 CheY binding J162_03035 PF00672 HAMP domain J162_03035 PF02203 Tar ligand binding domain homologue J162_03035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_03036 PF01584 CheW-like domain J162_03037 PF13426 PAS domain J162_03037 PF00563 EAL domain J162_03037 PF00990 Diguanylate cyclase, GGDEF domain J162_03038 PF01739 CheR methyltransferase, SAM binding domain J162_03038 PF03705 CheR methyltransferase, all-alpha domain J162_03039 PF00072 Response regulator receiver domain J162_03039 PF01339 CheB methylesterase J162_03040 PF13091 PLD-like domain J162_03041 PF05649 Peptidase family M13 J162_03041 PF01431 Peptidase family M13 J162_03043 PF00300 Histidine phosphatase superfamily (branch 1) J162_03044 PF04493 Endonuclease V J162_03046 PF05726 Pirin C-terminal cupin domain J162_03046 PF02678 Pirin J162_03049 PF02678 Pirin J162_03049 PF05726 Pirin C-terminal cupin domain J162_03050 PF13722 5TM C-terminal transporter carbon starvation CstA J162_03050 PF02554 Carbon starvation protein CstA J162_03051 PF04328 Selenoprotein, putative J162_03060 PF01527 Transposase J162_03062 PF13478 XdhC Rossmann domain J162_03062 PF02625 XdhC and CoxI family J162_03063 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J162_03063 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J162_03064 PF03450 CO dehydrogenase flavoprotein C-terminal domain J162_03064 PF00941 FAD binding domain in molybdopterin dehydrogenase J162_03065 PF00111 2Fe-2S iron-sulfur cluster binding domain J162_03065 PF01799 [2Fe-2S] binding domain J162_03065 PF10518 TAT (twin-arginine translocation) pathway signal sequence J162_03066 PF14765 Polyketide synthase dehydratase J162_03066 PF00550 Phosphopantetheine attachment site J162_03066 PF08659 KR domain J162_03066 PF00109 Beta-ketoacyl synthase, N-terminal domain J162_03066 PF16197 Ketoacyl-synthetase C-terminal extension J162_03066 PF09277 Erythronolide synthase, docking J162_03066 PF08990 Erythronolide synthase docking J162_03066 PF08240 Alcohol dehydrogenase GroES-like domain J162_03066 PF00698 Acyl transferase domain J162_03066 PF02801 Beta-ketoacyl synthase, C-terminal domain J162_03067 PF01590 GAF domain J162_03067 PF00563 EAL domain J162_03067 PF00990 Diguanylate cyclase, GGDEF domain J162_03067 PF00360 Phytochrome region J162_03068 PF00436 Single-strand binding protein family J162_03069 PF00348 Polyprenyl synthetase J162_03071 PF08245 Mur ligase middle domain J162_03071 PF02875 Mur ligase family, glutamate ligase domain J162_03074 PF00696 Amino acid kinase family J162_03074 PF01842 ACT domain J162_03075 PF02567 Phenazine biosynthesis-like protein J162_03076 PF02567 Phenazine biosynthesis-like protein J162_03078 PF02566 OsmC-like protein J162_03079 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J162_03079 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J162_03080 PF03652 Holliday junction resolvase J162_03081 PF02622 Uncharacterized ACR, COG1678 J162_03082 PF03352 Methyladenine glycosylase J162_03082 PF13673 Acetyltransferase (GNAT) domain J162_03082 PF13302 Acetyltransferase (GNAT) domain J162_03082 PF00958 GMP synthase C terminal domain J162_03082 PF00117 Glutamine amidotransferase class-I J162_03085 PF03211 Pectate lyase J162_03086 PF00437 Type II/IV secretion system protein J162_03087 PF00437 Type II/IV secretion system protein J162_03089 PF01168 Alanine racemase, N-terminal domain J162_03090 PF03807 NADP oxidoreductase coenzyme F420-dependent J162_03090 PF14748 Pyrroline-5-carboxylate reductase dimerisation J162_03092 PF01551 Peptidase family M23 J162_03096 PF01965 DJ-1/PfpI family J162_03098 PF02082 Transcriptional regulator J162_03099 PF01458 Uncharacterized protein family (UPF0051) J162_03100 PF00005 ABC transporter J162_03101 PF01458 Uncharacterized protein family (UPF0051) J162_03102 PF00266 Aminotransferase class-V J162_03104 PF00355 Rieske [2Fe-2S] domain J162_03105 PF00593 TonB dependent receptor J162_03105 PF07715 TonB-dependent Receptor Plug Domain J162_03106 PF13640 2OG-Fe(II) oxygenase superfamily J162_03106 PF18331 PKHD-type hydroxylase C-terminal domain J162_03111 PF02424 ApbE family J162_03112 PF00175 Oxidoreductase NAD-binding domain J162_03112 PF00667 FAD binding domain J162_03112 PF00258 Flavodoxin J162_03116 PF07687 Peptidase dimerisation domain J162_03116 PF01546 Peptidase family M20/M25/M40 J162_03118 PF01636 Phosphotransferase enzyme family J162_03119 PF00483 Nucleotidyl transferase J162_03120 PF00308 Bacterial dnaA protein J162_03121 PF01594 AI-2E family transporter J162_03123 PF02769 AIR synthase related protein, C-terminal domain J162_03123 PF00586 AIR synthase related protein, N-terminal domain J162_03125 PF00551 Formyl transferase J162_03129 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J162_03130 PF01722 BolA-like protein J162_03131 PF01380 SIS domain J162_03131 PF00571 CBS domain J162_03134 PF03968 OstA-like protein J162_03135 PF00005 ABC transporter J162_03136 PF04552 Sigma-54, DNA binding domain J162_03136 PF00309 Sigma-54 factor, Activator interacting domain (AID) J162_03136 PF04963 Sigma-54 factor, core binding domain J162_03137 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J162_03138 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J162_03139 PF07475 HPr Serine kinase C-terminal domain J162_03139 PF02603 HPr Serine kinase N terminus J162_03140 PF03668 P-loop ATPase protein family J162_03142 PF00381 PTS HPr component phosphorylation site J162_03143 PF05524 PEP-utilising enzyme, N-terminal J162_03143 PF02896 PEP-utilising enzyme, TIM barrel domain J162_03143 PF00391 PEP-utilising enzyme, mobile domain J162_03144 PF03448 MgtE intracellular N domain J162_03144 PF01769 Divalent cation transporter J162_03144 PF00571 CBS domain J162_03145 PF00756 Putative esterase J162_03146 PF02322 Cytochrome bd terminal oxidase subunit II J162_03147 PF01654 Cytochrome bd terminal oxidase subunit I J162_03149 PF00324 Amino acid permease J162_03150 PF00544 Pectate lyase J162_03151 PF00561 alpha/beta hydrolase fold J162_03152 PF00196 Bacterial regulatory proteins, luxR family J162_03153 PF00324 Amino acid permease J162_03158 PF12706 Beta-lactamase superfamily domain J162_03159 PF04820 Tryptophan halogenase J162_03164 PF00376 MerR family regulatory protein J162_03164 PF09278 MerR, DNA binding J162_03165 PF07690 Major Facilitator Superfamily J162_03167 PF03738 Glutathionylspermidine synthase preATP-grasp J162_03172 PF04012 PspA/IM30 family J162_03174 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J162_03174 PF01243 Pyridoxamine 5'-phosphate oxidase J162_03175 PF01202 Shikimate kinase J162_03176 PF01761 3-dehydroquinate synthase J162_03178 PF01208 Uroporphyrinogen decarboxylase (URO-D) J162_03191 PF00158 Sigma-54 interaction domain J162_03191 PF01590 GAF domain J162_03191 PF02954 Bacterial regulatory protein, Fis family J162_03192 PF07690 Major Facilitator Superfamily J162_03193 PF00072 Response regulator receiver domain J162_03193 PF01627 Hpt domain J162_03193 PF00512 His Kinase A (phospho-acceptor) domain J162_03193 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_03193 PF00672 HAMP domain J162_03193 PF17149 Periplasmic sensor domain found in signal transduction proteins J162_03194 PF00672 HAMP domain J162_03194 PF00072 Response regulator receiver domain J162_03194 PF01627 Hpt domain J162_03194 PF00512 His Kinase A (phospho-acceptor) domain J162_03194 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_03194 PF17149 Periplasmic sensor domain found in signal transduction proteins J162_03196 PF01627 Hpt domain J162_03196 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_03196 PF00512 His Kinase A (phospho-acceptor) domain J162_03196 PF00072 Response regulator receiver domain J162_03197 PF04264 YceI-like domain J162_03201 PF03313 Serine dehydratase alpha chain J162_03201 PF03315 Serine dehydratase beta chain J162_03202 PF12697 Alpha/beta hydrolase family J162_03203 PF00696 Amino acid kinase family J162_03203 PF03447 Homoserine dehydrogenase, NAD binding domain J162_03203 PF00742 Homoserine dehydrogenase J162_03204 PF01053 Cys/Met metabolism PLP-dependent enzyme J162_03205 PF00561 alpha/beta hydrolase fold J162_03207 PF01476 LysM domain J162_03207 PF01551 Peptidase family M23 J162_03207 PF08525 Opacity-associated protein A N-terminal motif J162_03208 PF00009 Elongation factor Tu GTP binding domain J162_03208 PF16658 Class II release factor RF3, C-terminal domain J162_03209 PF03006 Haemolysin-III related J162_03210 PF05170 AsmA family J162_03211 PF00571 CBS domain J162_03211 PF00478 IMP dehydrogenase / GMP reductase domain J162_03212 PF00535 Glycosyl transferase family 2 J162_03213 PF00912 Transglycosylase J162_03214 PF01430 Hsp33 protein J162_03216 PF07715 TonB-dependent Receptor Plug Domain J162_03216 PF00593 TonB dependent receptor J162_03218 PF00440 Bacterial regulatory proteins, tetR family J162_03219 PF00561 alpha/beta hydrolase fold J162_03220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J162_03220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J162_03220 PF09317 Domain of unknown function (DUF1974) J162_03225 PF01597 Glycine cleavage H-protein J162_03226 PF08669 Glycine cleavage T-protein C-terminal barrel domain J162_03226 PF01571 Aminomethyltransferase folate-binding domain J162_03228 PF01145 SPFH domain / Band 7 family J162_03228 PF16200 C-terminal region of band_7 J162_03229 PF02694 Uncharacterised BCR, YnfA/UPF0060 family J162_03230 PF03819 MazG nucleotide pyrophosphohydrolase domain J162_03231 PF00459 Inositol monophosphatase family J162_03232 PF00293 NUDIX domain J162_03233 PF00202 Aminotransferase class-III J162_03234 PF04452 RNA methyltransferase J162_03235 PF02685 Glucokinase J162_03238 PF00704 Glycosyl hydrolases family 18 J162_03238 PF01476 LysM domain J162_03239 PF02838 Glycosyl hydrolase family 20, domain 2 J162_03239 PF07691 PA14 domain J162_03239 PF00728 Glycosyl hydrolase family 20, catalytic domain J162_03241 PF01915 Glycosyl hydrolase family 3 C-terminal domain J162_03241 PF14310 Fibronectin type III-like domain J162_03241 PF00933 Glycosyl hydrolase family 3 N terminal domain J162_03241 PF07691 PA14 domain J162_03243 PF01301 Glycosyl hydrolases family 35 J162_03244 PF13520 Amino acid permease J162_03246 PF02056 Family 4 glycosyl hydrolase J162_03246 PF11975 Family 4 glycosyl hydrolase C-terminal domain J162_03248 PF07971 Glycosyl hydrolase family 92 J162_03248 PF17678 Glycosyl hydrolase family 92 N-terminal domain J162_03249 PF01301 Glycosyl hydrolases family 35 J162_03255 PF03932 CutC family J162_03256 PF01112 Asparaginase J162_03257 PF13302 Acetyltransferase (GNAT) domain J162_03260 PF01584 CheW-like domain J162_03260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_03260 PF00072 Response regulator receiver domain J162_03260 PF01627 Hpt domain J162_03261 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J162_03261 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_03263 PF00072 Response regulator receiver domain J162_03264 PF00072 Response regulator receiver domain J162_03265 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain J162_03265 PF02951 Prokaryotic glutathione synthetase, N-terminal domain J162_03267 PF03747 ADP-ribosylglycohydrolase J162_03268 PF00814 Glycoprotease family J162_03269 PF13307 Helicase C-terminal domain J162_03269 PF04851 Type III restriction enzyme, res subunit J162_03271 PF14814 Bifunctional transglycosylase second domain J162_03271 PF00912 Transglycosylase J162_03271 PF00905 Penicillin binding protein transpeptidase domain J162_03272 PF00535 Glycosyl transferase family 2 J162_03274 PF13291 ACT domain J162_03274 PF02824 TGS domain J162_03274 PF04607 Region found in RelA / SpoT proteins J162_03275 PF12706 Beta-lactamase superfamily domain J162_03276 PF03070 TENA/THI-4/PQQC family J162_03277 PF05402 Coenzyme PQQ synthesis protein D (PqqD) J162_03278 PF13186 Iron-sulfur cluster-binding domain J162_03278 PF04055 Radical SAM superfamily J162_03281 PF02685 Glucokinase J162_03283 PF00271 Helicase conserved C-terminal domain J162_03283 PF00270 DEAD/DEAH box helicase J162_03283 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J162_03283 PF11898 Domain of unknown function (DUF3418) J162_03283 PF04408 Helicase associated domain (HA2) J162_03284 PF00210 Ferritin-like domain J162_03285 PF00270 DEAD/DEAH box helicase J162_03285 PF00271 Helicase conserved C-terminal domain J162_03285 PF16124 RecQ zinc-binding J162_03285 PF09382 RQC domain J162_03285 PF00570 HRDC domain J162_03292 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_03292 PF02203 Tar ligand binding domain homologue J162_03292 PF00672 HAMP domain J162_03296 PF13581 Histidine kinase-like ATPase domain J162_03296 PF13426 PAS domain J162_03296 PF07536 HWE histidine kinase J162_03297 PF06508 Queuosine biosynthesis protein QueC J162_03299 PF04055 Radical SAM superfamily J162_03301 PF00691 OmpA family J162_03302 PF07676 WD40-like Beta Propeller Repeat J162_03302 PF04052 TolB amino-terminal domain J162_03304 PF02472 Biopolymer transport protein ExbD/TolR J162_03305 PF01618 MotA/TolQ/ExbB proton channel family J162_03306 PF03061 Thioesterase superfamily J162_03307 PF05496 Holliday junction DNA helicase RuvB P-loop domain J162_03307 PF05491 RuvB C-terminal winged helix domain J162_03307 PF17864 RuvB AAA lid domain J162_03309 PF02705 K+ potassium transporter J162_03310 PF01330 RuvA N terminal domain J162_03310 PF07499 RuvA, C-terminal domain J162_03311 PF02075 Crossover junction endodeoxyribonuclease RuvC J162_03312 PF01709 Transcriptional regulator J162_03315 PF02938 GAD domain J162_03315 PF01336 OB-fold nucleic acid binding domain J162_03315 PF00152 tRNA synthetases class II (D, K and N) J162_03318 PF07690 Major Facilitator Superfamily J162_03321 PF04185 Phosphoesterase family J162_03321 PF05506 Domain of unknown function (DUF756) J162_03324 PF03466 LysR substrate binding domain J162_03324 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_03326 PF00005 ABC transporter J162_03326 PF12848 ABC transporter J162_03327 PF00593 TonB dependent receptor J162_03327 PF07715 TonB-dependent Receptor Plug Domain J162_03329 PF07715 TonB-dependent Receptor Plug Domain J162_03329 PF00593 TonB dependent receptor J162_03330 PF07715 TonB-dependent Receptor Plug Domain J162_03330 PF00593 TonB dependent receptor J162_03331 PF00067 Cytochrome P450 J162_03332 PF02254 TrkA-N domain J162_03332 PF00999 Sodium/hydrogen exchanger family J162_03337 PF07715 TonB-dependent Receptor Plug Domain J162_03337 PF00593 TonB dependent receptor J162_03337 PF07660 Secretin and TonB N terminus short domain J162_03339 PF04183 IucA / IucC family J162_03339 PF06276 Ferric iron reductase FhuF-like transporter J162_03340 PF07690 Major Facilitator Superfamily J162_03342 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J162_03342 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J162_03345 PF02654 Cobalamin-5-phosphate synthase J162_03347 PF02277 Phosphoribosyltransferase J162_03348 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase J162_03349 PF07685 CobB/CobQ-like glutamine amidotransferase domain J162_03349 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J162_03350 PF00155 Aminotransferase class I and II J162_03351 PF17113 Regulatory signalling modulator protein AmpE J162_03351 PF03186 CobD/Cbib protein J162_03352 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP J162_03352 PF12557 Cob(I)alamin adenosyltransferase N terminal J162_03355 PF00593 TonB dependent receptor J162_03355 PF07715 TonB-dependent Receptor Plug Domain J162_03357 PF00004 ATPase family associated with various cellular activities (AAA) J162_03357 PF07724 AAA domain (Cdc48 subfamily) J162_03357 PF02861 Clp amino terminal domain, pathogenicity island component J162_03357 PF17871 AAA lid domain J162_03357 PF10431 C-terminal, D2-small domain, of ClpB protein J162_03358 PF00005 ABC transporter J162_03359 PF00528 Binding-protein-dependent transport system inner membrane component J162_03360 PF09084 NMT1/THI5 like J162_03361 PF00248 Aldo/keto reductase family J162_03363 PF07715 TonB-dependent Receptor Plug Domain J162_03363 PF00593 TonB dependent receptor J162_03364 PF01541 GIY-YIG catalytic domain J162_03371 PF00593 TonB dependent receptor J162_03371 PF07715 TonB-dependent Receptor Plug Domain J162_03372 PF02358 Trehalose-phosphatase J162_03373 PF00723 Glycosyl hydrolases family 15 J162_03374 PF00982 Glycosyltransferase family 20 J162_03375 PF01011 PQQ enzyme repeat J162_03376 PF02203 Tar ligand binding domain homologue J162_03376 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_03376 PF00672 HAMP domain J162_03377 PF04134 Protein of unknown function, DUF393 J162_03380 PF00849 RNA pseudouridylate synthase J162_03381 PF13525 Outer membrane lipoprotein J162_03383 PF02540 NAD synthase J162_03383 PF00795 Carbon-nitrogen hydrolase J162_03385 PF01527 Transposase J162_03389 PF13406 Transglycosylase SLT domain J162_03390 PF13700 Domain of unknown function (DUF4158) J162_03390 PF01526 Tn3 transposase DDE domain J162_03394 PF01129 NAD:arginine ADP-ribosyltransferase J162_03399 PF02629 CoA binding domain J162_03399 PF00549 CoA-ligase J162_03400 PF08442 ATP-grasp domain J162_03400 PF00549 CoA-ligase J162_03401 PF00512 His Kinase A (phospho-acceptor) domain J162_03401 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_03402 PF00072 Response regulator receiver domain J162_03402 PF02954 Bacterial regulatory protein, Fis family J162_03402 PF00158 Sigma-54 interaction domain J162_03404 PF00437 Type II/IV secretion system protein J162_03404 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J162_03405 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J162_03405 PF00437 Type II/IV secretion system protein J162_03406 PF00437 Type II/IV secretion system protein J162_03406 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J162_03407 PF00114 Pilin (bacterial filament) J162_03407 PF07963 Prokaryotic N-terminal methylation motif J162_03408 PF07963 Prokaryotic N-terminal methylation motif J162_03408 PF00114 Pilin (bacterial filament) J162_03409 PF00482 Type II secretion system (T2SS), protein F J162_03410 PF06750 Bacterial Peptidase A24 N-terminal domain J162_03410 PF01478 Type IV leader peptidase family J162_03411 PF01121 Dephospho-CoA kinase J162_03415 PF01527 Transposase J162_03416 PF13276 HTH-like domain J162_03416 PF00665 Integrase core domain J162_03416 PF13333 Integrase core domain J162_03417 PF16736 Single Cache-like J162_03417 PF00989 PAS fold J162_03417 PF00512 His Kinase A (phospho-acceptor) domain J162_03417 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_03418 PF00072 Response regulator receiver domain J162_03418 PF00486 Transcriptional regulatory protein, C terminal J162_03420 PF18030 RimK PreATP-grasp domain J162_03420 PF08443 RimK-like ATP-grasp domain J162_03421 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J162_03421 PF00128 Alpha amylase, catalytic domain J162_03434 PF04002 RadC-like JAB domain J162_03439 PF13426 PAS domain J162_03439 PF00072 Response regulator receiver domain J162_03439 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_03440 PF13426 PAS domain J162_03440 PF00072 Response regulator receiver domain J162_03440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_03446 PF01527 Transposase J162_03455 PF00512 His Kinase A (phospho-acceptor) domain J162_03455 PF00072 Response regulator receiver domain J162_03455 PF13188 PAS domain J162_03455 PF08448 PAS fold J162_03455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_03459 PF13676 TIR domain J162_03463 PF03797 Autotransporter beta-domain J162_03463 PF00657 GDSL-like Lipase/Acylhydrolase J162_03465 PF05690 Thiazole biosynthesis protein ThiG J162_03466 PF02390 Putative methyltransferase J162_03467 PF02080 TrkA-C domain J162_03467 PF03600 Citrate transporter J162_03470 PF01557 Fumarylacetoacetate (FAA) hydrolase family J162_03471 PF01741 Large-conductance mechanosensitive channel, MscL J162_03473 PF00356 Bacterial regulatory proteins, lacI family J162_03475 PF02837 Glycosyl hydrolases family 2, sugar binding domain J162_03475 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain J162_03475 PF00703 Glycosyl hydrolases family 2 J162_03476 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation J162_03476 PF14508 Glycosyl-hydrolase 97 N-terminal J162_03476 PF10566 Glycoside hydrolase 97 J162_03478 PF00135 Carboxylesterase family J162_03479 PF08032 RNA 2'-O ribose methyltransferase substrate binding J162_03479 PF00588 SpoU rRNA Methylase family J162_03481 PF01433 Peptidase family M1 domain J162_03481 PF11838 ERAP1-like C-terminal domain J162_03484 PF01527 Transposase J162_03490 PF00873 AcrB/AcrD/AcrF family J162_03491 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J162_03491 PF00529 HlyD membrane-fusion protein of T1SS J162_03492 PF00009 Elongation factor Tu GTP binding domain J162_03493 PF01507 Phosphoadenosine phosphosulfate reductase family J162_03494 PF00175 Oxidoreductase NAD-binding domain J162_03494 PF00258 Flavodoxin J162_03494 PF00667 FAD binding domain J162_03495 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J162_03495 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J162_03496 PF01507 Phosphoadenosine phosphosulfate reductase family J162_03500 PF01627 Hpt domain J162_03500 PF00072 Response regulator receiver domain J162_03500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_03500 PF00512 His Kinase A (phospho-acceptor) domain J162_03502 PF03466 LysR substrate binding domain J162_03502 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_03503 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J162_03503 PF14824 Sirohaem biosynthesis protein central J162_03503 PF10414 Sirohaem synthase dimerisation region J162_03504 PF00291 Pyridoxal-phosphate dependent enzyme J162_03506 PF01661 Macro domain J162_03507 PF00274 Fructose-bisphosphate aldolase class-I J162_03508 PF00224 Pyruvate kinase, barrel domain J162_03508 PF02887 Pyruvate kinase, alpha/beta domain J162_03510 PF00162 Phosphoglycerate kinase J162_03515 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J162_03515 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J162_03517 PF03922 OmpW family J162_03518 PF03922 OmpW family J162_03520 PF00753 Metallo-beta-lactamase superfamily J162_03520 PF04273 Putative phosphatase (DUF442) J162_03522 PF00528 Binding-protein-dependent transport system inner membrane component J162_03523 PF03459 TOBE domain J162_03523 PF00005 ABC transporter J162_03530 PF01476 LysM domain J162_03530 PF03734 L,D-transpeptidase catalytic domain J162_03531 PF04225 Opacity-associated protein A LysM-like domain J162_03531 PF01551 Peptidase family M23 J162_03533 PF00593 TonB dependent receptor J162_03533 PF07715 TonB-dependent Receptor Plug Domain J162_03534 PF12146 Serine aminopeptidase, S33 J162_03535 PF00456 Transketolase, thiamine diphosphate binding domain J162_03535 PF02779 Transketolase, pyrimidine binding domain J162_03535 PF02780 Transketolase, C-terminal domain J162_03536 PF00375 Sodium:dicarboxylate symporter family J162_03538 PF00092 von Willebrand factor type A domain J162_03538 PF07584 Aerotolerance regulator N-terminal J162_03542 PF17863 AAA lid domain J162_03542 PF07726 ATPase family associated with various cellular activities (AAA) J162_03544 PF03958 Bacterial type II/III secretion system short domain J162_03544 PF11741 AMIN domain J162_03544 PF07660 Secretin and TonB N terminus short domain J162_03544 PF00263 Bacterial type II and III secretion system protein J162_03549 PF00905 Penicillin binding protein transpeptidase domain J162_03549 PF17092 Penicillin-binding protein OB-like domain J162_03549 PF00912 Transglycosylase J162_03552 PF00285 Citrate synthase, C-terminal domain J162_03553 PF01197 Ribosomal protein L31 J162_03554 PF01156 Inosine-uridine preferring nucleoside hydrolase J162_03555 PF00270 DEAD/DEAH box helicase J162_03555 PF17191 RecG wedge domain J162_03555 PF00271 Helicase conserved C-terminal domain J162_03556 PF01042 Endoribonuclease L-PSP J162_03557 PF13291 ACT domain J162_03557 PF04607 Region found in RelA / SpoT proteins J162_03557 PF02824 TGS domain J162_03558 PF01192 RNA polymerase Rpb6 J162_03559 PF00625 Guanylate kinase J162_03560 PF03755 YicC-like family, N-terminal region J162_03560 PF08340 Domain of unknown function (DUF1732) J162_03561 PF01138 3' exoribonuclease family, domain 1 J162_03561 PF03725 3' exoribonuclease family, domain 2 J162_03563 PF01725 Ham1 family J162_03564 PF06969 HemN C-terminal domain J162_03564 PF04055 Radical SAM superfamily J162_03567 PF00557 Metallopeptidase family M24 J162_03569 PF00557 Metallopeptidase family M24 J162_03569 PF05195 Aminopeptidase P, N-terminal domain J162_03570 PF05195 Aminopeptidase P, N-terminal domain J162_03570 PF00557 Metallopeptidase family M24 J162_03571 PF03695 Uncharacterised protein family (UPF0149) J162_03573 PF05164 Cell division protein ZapA J162_03575 PF01812 5-formyltetrahydrofolate cyclo-ligase family J162_03577 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J162_03579 PF13369 Transglutaminase-like superfamily J162_03580 PF00301 Rubredoxin J162_03581 PF02581 Thiamine monophosphate synthase J162_03584 PF00202 Aminotransferase class-III J162_03585 PF00196 Bacterial regulatory proteins, luxR family J162_03585 PF17874 MalT-like TPR region J162_03586 PF00127 Copper binding proteins, plastocyanin/azurin family J162_03587 PF00155 Aminotransferase class I and II J162_03589 PF00034 Cytochrome c J162_03589 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J162_03590 PF01593 Flavin containing amine oxidoreductase J162_03593 PF00202 Aminotransferase class-III J162_03594 PF00027 Cyclic nucleotide-binding domain J162_03594 PF00520 Ion transport protein J162_03597 PF01569 PAP2 superfamily J162_03598 PF01062 Bestrophin, RFP-TM, chloride channel J162_03600 PF01225 Mur ligase family, catalytic domain J162_03600 PF02875 Mur ligase family, glutamate ligase domain J162_03600 PF08245 Mur ligase middle domain J162_03602 PF00365 Phosphofructokinase J162_03604 PF03030 Inorganic H+ pyrophosphatase J162_03606 PF00719 Inorganic pyrophosphatase J162_03608 PF00593 TonB dependent receptor J162_03608 PF07715 TonB-dependent Receptor Plug Domain J162_03609 PF12833 Helix-turn-helix domain J162_03610 PF00486 Transcriptional regulatory protein, C terminal J162_03610 PF18500 CadC C-terminal domain 1 J162_03611 PF01964 Radical SAM ThiC family J162_03611 PF13667 ThiC-associated domain J162_03613 PF07715 TonB-dependent Receptor Plug Domain J162_03613 PF00593 TonB dependent receptor J162_03614 PF02203 Tar ligand binding domain homologue J162_03614 PF00672 HAMP domain J162_03614 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_03616 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J162_03616 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J162_03617 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J162_03617 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J162_03617 PF00205 Thiamine pyrophosphate enzyme, central domain J162_03619 PF00291 Pyridoxal-phosphate dependent enzyme J162_03620 PF00682 HMGL-like J162_03620 PF08502 LeuA allosteric (dimerisation) domain J162_03621 PF00180 Isocitrate/isopropylmalate dehydrogenase J162_03622 PF00694 Aconitase C-terminal domain J162_03623 PF00330 Aconitase family (aconitate hydratase) J162_03624 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_03625 PF17151 Periplasmic sensor domain J162_03625 PF00990 Diguanylate cyclase, GGDEF domain J162_03628 PF02321 Outer membrane efflux protein J162_03629 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) J162_03630 PF03279 Bacterial lipid A biosynthesis acyltransferase J162_03635 PF01515 Phosphate acetyl/butaryl transferase J162_03635 PF00390 Malic enzyme, N-terminal domain J162_03635 PF03949 Malic enzyme, NAD binding domain J162_03636 PF00375 Sodium:dicarboxylate symporter family J162_03638 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_03638 PF00512 His Kinase A (phospho-acceptor) domain J162_03638 PF02743 Cache domain J162_03639 PF07690 Major Facilitator Superfamily J162_03641 PF03466 LysR substrate binding domain J162_03641 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_03642 PF00248 Aldo/keto reductase family J162_03646 PF00072 Response regulator receiver domain J162_03646 PF00196 Bacterial regulatory proteins, luxR family J162_03648 PF00512 His Kinase A (phospho-acceptor) domain J162_03648 PF08521 Two-component sensor kinase N-terminal J162_03648 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_03649 PF00486 Transcriptional regulatory protein, C terminal J162_03649 PF00072 Response regulator receiver domain J162_03651 PF03600 Citrate transporter J162_03653 PF00106 short chain dehydrogenase J162_03654 PF00356 Bacterial regulatory proteins, lacI family J162_03657 PF00128 Alpha amylase, catalytic domain J162_03660 PF03193 RsgA GTPase J162_03664 PF00593 TonB dependent receptor J162_03664 PF07715 TonB-dependent Receptor Plug Domain J162_03665 PF01522 Polysaccharide deacetylase J162_03666 PF00462 Glutaredoxin J162_03669 PF01527 Transposase J162_03674 PF02645 Uncharacterised protein, DegV family COG1307 J162_03675 PF01327 Polypeptide deformylase J162_03676 PF03960 ArsC family J162_03679 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) J162_03680 PF01270 Glycosyl hydrolases family 8 J162_03681 PF03170 Bacterial cellulose synthase subunit J162_03682 PF03552 Cellulose synthase J162_03682 PF07238 PilZ domain J162_03682 PF00535 Glycosyl transferase family 2 J162_03685 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family J162_03685 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain J162_03692 PF00593 TonB dependent receptor J162_03692 PF07715 TonB-dependent Receptor Plug Domain J162_03694 PF00392 Bacterial regulatory proteins, gntR family J162_03694 PF07702 UTRA domain J162_03696 PF03958 Bacterial type II/III secretion system short domain J162_03696 PF00263 Bacterial type II and III secretion system protein J162_03698 PF10741 Type II secretion system (T2SS), protein M subtype b J162_03699 PF05137 Fimbrial assembly protein (PilN) J162_03700 PF03934 Type II secretion system (T2SS), protein K J162_03702 PF07963 Prokaryotic N-terminal methylation motif J162_03703 PF12019 Type II transport protein GspH J162_03704 PF08334 Type II secretion system (T2SS), protein G J162_03705 PF00482 Type II secretion system (T2SS), protein F J162_03706 PF00437 Type II/IV secretion system protein J162_03706 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J162_03707 PF00082 Subtilase family J162_03707 PF04151 Bacterial pre-peptidase C-terminal domain J162_03708 PF03895 YadA-like membrane anchor domain J162_03708 PF13018 Extended Signal Peptide of Type V secretion system J162_03708 PF05658 Head domain of trimeric autotransporter adhesin J162_03708 PF05662 Coiled stalk of trimeric autotransporter adhesin J162_03709 PF04151 Bacterial pre-peptidase C-terminal domain J162_03709 PF00082 Subtilase family J162_03710 PF03895 YadA-like membrane anchor domain J162_03710 PF05658 Head domain of trimeric autotransporter adhesin J162_03710 PF05662 Coiled stalk of trimeric autotransporter adhesin J162_03710 PF13018 Extended Signal Peptide of Type V secretion system J162_03711 PF02769 AIR synthase related protein, C-terminal domain J162_03711 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J162_03711 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal J162_03712 PF13098 Thioredoxin-like domain J162_03712 PF10411 Disulfide bond isomerase protein N-terminus J162_03713 PF02899 Phage integrase, N-terminal SAM-like domain J162_03713 PF00589 Phage integrase family J162_03716 PF03739 Lipopolysaccharide export system permease LptF/LptG J162_03718 PF02789 Cytosol aminopeptidase family, N-terminal domain J162_03718 PF00883 Cytosol aminopeptidase family, catalytic domain J162_03721 PF10458 Valyl tRNA synthetase tRNA binding arm J162_03721 PF00133 tRNA synthetases class I (I, L, M and V) J162_03721 PF08264 Anticodon-binding domain of tRNA J162_03722 PF00593 TonB dependent receptor J162_03722 PF07715 TonB-dependent Receptor Plug Domain J162_03723 PF01464 Transglycosylase SLT domain J162_03723 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J162_03724 PF00544 Pectate lyase J162_03727 PF01066 CDP-alcohol phosphatidyltransferase J162_03729 PF04073 Aminoacyl-tRNA editing domain J162_03729 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J162_03729 PF03129 Anticodon binding domain J162_03730 PF00816 H-NS histone family J162_03732 PF02405 Permease MlaE J162_03733 PF00005 ABC transporter J162_03734 PF03886 ABC-type transport auxiliary lipoprotein component J162_03734 PF02470 MlaD protein J162_03738 PF14307 Glycosyltransferase WbsX J162_03738 PF05045 Rhamnan synthesis protein F J162_03739 PF01144 Coenzyme A transferase J162_03740 PF01144 Coenzyme A transferase J162_03741 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J162_03741 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J162_03741 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J162_03741 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J162_03742 PF01050 Mannose-6-phosphate isomerase J162_03742 PF00483 Nucleotidyl transferase J162_03743 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J162_03743 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J162_03743 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J162_03744 PF04321 RmlD substrate binding domain J162_03745 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase J162_03746 PF00483 Nucleotidyl transferase J162_03747 PF16363 GDP-mannose 4,6 dehydratase J162_03748 PF01012 Electron transfer flavoprotein domain J162_03749 PF00766 Electron transfer flavoprotein FAD-binding domain J162_03749 PF01012 Electron transfer flavoprotein domain J162_03751 PF01040 UbiA prenyltransferase family J162_03752 PF04030 D-arabinono-1,4-lactone oxidase J162_03752 PF01565 FAD binding domain J162_03753 PF00106 short chain dehydrogenase J162_03755 PF01370 NAD dependent epimerase/dehydratase family J162_03756 PF07992 Pyridine nucleotide-disulphide oxidoreductase J162_03756 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J162_03761 PF00535 Glycosyl transferase family 2 J162_03763 PF00005 ABC transporter J162_03763 PF14524 Wzt C-terminal domain J162_03765 PF01053 Cys/Met metabolism PLP-dependent enzyme J162_03766 PF00291 Pyridoxal-phosphate dependent enzyme J162_03766 PF00571 CBS domain J162_03770 PF00437 Type II/IV secretion system protein J162_03771 PF14497 Glutathione S-transferase, C-terminal domain J162_03771 PF02798 Glutathione S-transferase, N-terminal domain J162_03773 PF00271 Helicase conserved C-terminal domain J162_03773 PF00270 DEAD/DEAH box helicase J162_03776 PF07715 TonB-dependent Receptor Plug Domain J162_03776 PF00593 TonB dependent receptor J162_03777 PF01242 6-pyruvoyl tetrahydropterin synthase J162_03780 PF13185 GAF domain J162_03782 PF00756 Putative esterase J162_03783 PF07715 TonB-dependent Receptor Plug Domain J162_03783 PF00593 TonB dependent receptor J162_03784 PF13419 Haloacid dehalogenase-like hydrolase J162_03785 PF11799 impB/mucB/samB family C-terminal domain J162_03785 PF00817 impB/mucB/samB family J162_03786 PF07977 FabA-like domain J162_03787 PF02801 Beta-ketoacyl synthase, C-terminal domain J162_03787 PF00109 Beta-ketoacyl synthase, N-terminal domain J162_03789 PF01432 Peptidase family M3 J162_03792 PF00394 Multicopper oxidase J162_03792 PF07732 Multicopper oxidase J162_03792 PF07731 Multicopper oxidase J162_03793 PF05275 Copper resistance protein B precursor (CopB) J162_03794 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J162_03800 PF01380 SIS domain J162_03801 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J162_03802 PF00005 ABC transporter J162_03802 PF02687 FtsX-like permease family J162_03802 PF12704 MacB-like periplasmic core domain J162_03803 PF02687 FtsX-like permease family J162_03803 PF00005 ABC transporter J162_03803 PF12704 MacB-like periplasmic core domain J162_03804 PF12704 MacB-like periplasmic core domain J162_03804 PF02687 FtsX-like permease family J162_03806 PF00158 Sigma-54 interaction domain J162_03806 PF00072 Response regulator receiver domain J162_03807 PF12804 MobA-like NTP transferase domain J162_03807 PF00132 Bacterial transferase hexapeptide (six repeats) J162_03807 PF14602 Hexapeptide repeat of succinyl-transferase J162_03810 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J162_03810 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J162_03811 PF02874 ATP synthase alpha/beta family, beta-barrel domain J162_03811 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J162_03812 PF00231 ATP synthase J162_03813 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J162_03813 PF00306 ATP synthase alpha/beta chain, C terminal domain J162_03813 PF02874 ATP synthase alpha/beta family, beta-barrel domain J162_03814 PF00213 ATP synthase delta (OSCP) subunit J162_03815 PF00430 ATP synthase B/B' CF(0) J162_03816 PF00137 ATP synthase subunit C J162_03817 PF00119 ATP synthase A chain J162_03821 PF07992 Pyridine nucleotide-disulphide oxidoreductase J162_03821 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J162_03823 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J162_03823 PF00364 Biotin-requiring enzyme J162_03823 PF02817 e3 binding domain J162_03829 PF03180 NLPA lipoprotein J162_03830 PF00528 Binding-protein-dependent transport system inner membrane component J162_03831 PF09383 NIL domain J162_03831 PF00005 ABC transporter J162_03832 PF00892 EamA-like transporter family J162_03833 PF04461 Protein of unknown function (DUF520) J162_03835 PF00512 His Kinase A (phospho-acceptor) domain J162_03835 PF00989 PAS fold J162_03835 PF18415 Histidine kinase receptor ArcB trans-membrane domain J162_03835 PF01627 Hpt domain J162_03835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_03835 PF00072 Response regulator receiver domain J162_03839 PF13419 Haloacid dehalogenase-like hydrolase J162_03840 PF00849 RNA pseudouridylate synthase J162_03840 PF01479 S4 domain J162_03841 PF08468 Methyltransferase small domain N-terminal J162_03841 PF05175 Methyltransferase small domain J162_03843 PF07995 Glucose / Sorbosone dehydrogenase J162_03845 PF00989 PAS fold J162_03845 PF00512 His Kinase A (phospho-acceptor) domain J162_03845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_03849 PF01168 Alanine racemase, N-terminal domain J162_03849 PF00842 Alanine racemase, C-terminal domain J162_03850 PF01266 FAD dependent oxidoreductase J162_03851 PF01037 Lrp/AsnC ligand binding domain J162_03853 PF01641 SelR domain J162_03855 PF01618 MotA/TolQ/ExbB proton channel family J162_03856 PF13677 Membrane MotB of proton-channel complex MotA/MotB J162_03856 PF00691 OmpA family J162_03861 PF01061 ABC-2 type transporter J162_03862 PF00005 ABC transporter J162_03863 PF00999 Sodium/hydrogen exchanger family J162_03864 PF02469 Fasciclin domain J162_03865 PF03167 Uracil DNA glycosylase superfamily J162_03867 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J162_03869 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_03869 PF03466 LysR substrate binding domain J162_03870 PF03358 NADPH-dependent FMN reductase J162_03871 PF00248 Aldo/keto reductase family J162_03873 PF01431 Peptidase family M13 J162_03873 PF05649 Peptidase family M13 J162_03877 PF13520 Amino acid permease J162_03879 PF00072 Response regulator receiver domain J162_03879 PF04397 LytTr DNA-binding domain J162_03880 PF00672 HAMP domain J162_03880 PF02743 Cache domain J162_03880 PF06580 Histidine kinase J162_03880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_03883 PF05974 Domain of unknown function (DUF892) J162_03884 PF05067 Manganese containing catalase J162_03887 PF01739 CheR methyltransferase, SAM binding domain J162_03887 PF08448 PAS fold J162_03887 PF03705 CheR methyltransferase, all-alpha domain J162_03887 PF01339 CheB methylesterase J162_03890 PF00158 Sigma-54 interaction domain J162_03890 PF02954 Bacterial regulatory protein, Fis family J162_03890 PF00072 Response regulator receiver domain J162_03892 PF01654 Cytochrome bd terminal oxidase subunit I J162_03893 PF02322 Cytochrome bd terminal oxidase subunit II J162_03897 PF16363 GDP-mannose 4,6 dehydratase J162_03899 PF03275 UDP-galactopyranose mutase J162_03901 PF00664 ABC transporter transmembrane region J162_03901 PF00005 ABC transporter J162_03904 PF13823 Alcohol dehydrogenase GroES-associated J162_03904 PF00107 Zinc-binding dehydrogenase J162_03904 PF08240 Alcohol dehydrogenase GroES-like domain J162_03913 PF00593 TonB dependent receptor J162_03913 PF07715 TonB-dependent Receptor Plug Domain J162_03916 PF00005 ABC transporter J162_03918 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_03918 PF03466 LysR substrate binding domain J162_03919 PF01042 Endoribonuclease L-PSP J162_03921 PF01527 Transposase J162_03925 PF02203 Tar ligand binding domain homologue J162_03925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J162_03925 PF00672 HAMP domain J162_03928 PF03466 LysR substrate binding domain J162_03928 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_03929 PF02525 Flavodoxin-like fold J162_03938 PF00557 Metallopeptidase family M24 J162_03943 PF04546 Sigma-70, non-essential region J162_03943 PF00140 Sigma-70 factor, region 1.2 J162_03943 PF03979 Sigma-70 factor, region 1.1 J162_03943 PF04542 Sigma-70 region 2 J162_03943 PF04545 Sigma-70, region 4 J162_03943 PF04539 Sigma-70 region 3 J162_03944 PF02580 D-Tyr-tRNA(Tyr) deacylase J162_03945 PF03279 Bacterial lipid A biosynthesis acyltransferase J162_03947 PF00925 GTP cyclohydrolase II J162_03951 PF00535 Glycosyl transferase family 2 J162_03954 PF01189 16S rRNA methyltransferase RsmB/F J162_03954 PF01029 NusB family J162_03955 PF00551 Formyl transferase J162_03955 PF02911 Formyl transferase, C-terminal domain J162_03956 PF01327 Polypeptide deformylase J162_03957 PF01476 LysM domain J162_03958 PF02481 DNA recombination-mediator protein A J162_03958 PF17782 DprA winged helix domain J162_03959 PF04361 Protein of unknown function (DUF494) J162_03960 PF00114 Pilin (bacterial filament) J162_03960 PF07963 Prokaryotic N-terminal methylation motif J162_03962 PF01131 DNA topoisomerase J162_03962 PF13368 Topoisomerase C-terminal repeat J162_03962 PF01751 Toprim domain J162_03963 PF01300 Telomere recombination J162_03968 PF01343 Peptidase family S49 J162_03969 PF01554 MatE J162_03973 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J162_03973 PF18074 Primosomal protein N C-terminal domain J162_03973 PF00270 DEAD/DEAH box helicase J162_03973 PF00271 Helicase conserved C-terminal domain J162_03973 PF17764 3′ DNA-binding domain (3′BD) J162_03974 PF00043 Glutathione S-transferase, C-terminal domain J162_03974 PF13417 Glutathione S-transferase, N-terminal domain J162_03977 PF07992 Pyridine nucleotide-disulphide oxidoreductase J162_03978 PF03458 UPF0126 domain J162_03979 PF04545 Sigma-70, region 4 J162_03979 PF04542 Sigma-70 region 2 J162_03980 PF03167 Uracil DNA glycosylase superfamily J162_03981 PF01339 CheB methylesterase J162_03981 PF00072 Response regulator receiver domain J162_03982 PF18075 FtsX extracellular domain J162_03983 PF00005 ABC transporter J162_03984 PF12300 ATP-dependent RNA helicase RhlB J162_03984 PF00271 Helicase conserved C-terminal domain J162_03984 PF00270 DEAD/DEAH box helicase J162_03985 PF00085 Thioredoxin J162_03986 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J162_03986 PF07498 Rho termination factor, N-terminal domain J162_03986 PF07497 Rho termination factor, RNA-binding domain J162_03987 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) J162_03988 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_03988 PF03466 LysR substrate binding domain J162_03990 PF03971 Monomeric isocitrate dehydrogenase J162_03993 PF09704 CRISPR-associated protein (Cas_Cas5) J162_03998 PF01867 CRISPR associated protein Cas1 J162_03999 PF09827 CRISPR associated protein Cas2 J162_04001 PF04972 BON domain J162_04001 PF01476 LysM domain J162_04002 PF14489 QueF-like protein J162_04002 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J162_04003 PF01546 Peptidase family M20/M25/M40 J162_04003 PF07687 Peptidase dimerisation domain J162_04004 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J162_04005 PF00873 AcrB/AcrD/AcrF family J162_04006 PF00873 AcrB/AcrD/AcrF family J162_04007 PF07063 Domain of unknown function (DUF1338) J162_04015 PF01427 D-ala-D-ala dipeptidase J162_04016 PF01510 N-acetylmuramoyl-L-alanine amidase J162_04018 PF13378 Enolase C-terminal domain-like J162_04018 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J162_04020 PF13520 Amino acid permease J162_04023 PF05360 yiaA/B two helix domain J162_04024 PF07995 Glucose / Sorbosone dehydrogenase J162_04025 PF00933 Glycosyl hydrolase family 3 N terminal domain J162_04025 PF14310 Fibronectin type III-like domain J162_04025 PF01915 Glycosyl hydrolase family 3 C-terminal domain J162_04026 PF02152 Dihydroneopterin aldolase J162_04027 PF00814 Glycoprotease family J162_04028 PF01165 Ribosomal protein S21 J162_04029 PF09424 Yqey-like protein J162_04030 PF03631 Virulence factor BrkB J162_04031 PF10410 DnaB-helicase binding domain of primase J162_04031 PF08278 DNA primase DnaG DnaB-binding J162_04031 PF08275 DNA primase catalytic core, N-terminal domain J162_04031 PF01807 CHC2 zinc finger J162_04032 PF13593 SBF-like CPA transporter family (DUF4137) J162_04034 PF01040 UbiA prenyltransferase family J162_04039 PF00510 Cytochrome c oxidase subunit III J162_04040 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 J162_04042 PF00115 Cytochrome C and Quinol oxidase polypeptide I J162_04043 PF02790 Cytochrome C oxidase subunit II, transmembrane domain J162_04043 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J162_04045 PF00171 Aldehyde dehydrogenase family J162_04045 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J162_04045 PF14850 DNA-binding domain of Proline dehydrogenase J162_04045 PF01619 Proline dehydrogenase J162_04053 PF00579 tRNA synthetases class I (W and Y) J162_04054 PF04225 Opacity-associated protein A LysM-like domain J162_04054 PF01551 Peptidase family M23 J162_04055 PF03702 Anhydro-N-acetylmuramic acid kinase J162_04057 PF07690 Major Facilitator Superfamily J162_04058 PF03372 Endonuclease/Exonuclease/phosphatase family J162_04059 PF00156 Phosphoribosyl transferase domain J162_04061 PF13614 AAA domain J162_04062 PF17762 HTH domain found in ParB protein J162_04062 PF02195 ParB-like nuclease domain J162_04064 PF01370 NAD dependent epimerase/dehydratase family J162_04065 PF00535 Glycosyl transferase family 2 J162_04068 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J162_04068 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J162_04068 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J162_04068 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J162_04069 PF00692 dUTPase J162_04070 PF02441 Flavoprotein J162_04070 PF04127 DNA / pantothenate metabolism flavoprotein J162_04071 PF04002 RadC-like JAB domain J162_04072 PF00750 tRNA synthetases class I (R) J162_04072 PF05746 DALR anticodon binding domain J162_04072 PF03485 Arginyl tRNA synthetase N terminal domain J162_04075 PF00106 short chain dehydrogenase J162_04076 PF01757 Acyltransferase family J162_04077 PF03033 Glycosyltransferase family 28 N-terminal domain J162_04078 PF13193 AMP-binding enzyme C-terminal domain J162_04078 PF00668 Condensation domain J162_04078 PF00501 AMP-binding enzyme J162_04078 PF00975 Thioesterase domain J162_04078 PF00550 Phosphopantetheine attachment site J162_04079 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J162_04079 PF17944 Arginine decarboxylase C-terminal helical extension J162_04079 PF17810 Arginine decarboxylase helical bundle domain J162_04080 PF17284 Spermidine synthase tetramerisation domain J162_04085 PF00543 Nitrogen regulatory protein P-II J162_04086 PF04380 Membrane fusogenic activity J162_04087 PF01078 Magnesium chelatase, subunit ChlI J162_04087 PF13335 Magnesium chelatase, subunit ChlI C-terminal J162_04090 PF12792 CSS motif domain associated with EAL J162_04090 PF00563 EAL domain J162_04091 PF00487 Fatty acid desaturase J162_04092 PF00970 Oxidoreductase FAD-binding domain J162_04092 PF00111 2Fe-2S iron-sulfur cluster binding domain J162_04092 PF00175 Oxidoreductase NAD-binding domain J162_04093 PF00440 Bacterial regulatory proteins, tetR family J162_04099 PF01139 tRNA-splicing ligase RtcB J162_04107 PF08338 Domain of unknown function (DUF1731) J162_04107 PF01370 NAD dependent epimerase/dehydratase family J162_04108 PF00072 Response regulator receiver domain J162_04108 PF00486 Transcriptional regulatory protein, C terminal J162_04109 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_04109 PF00512 His Kinase A (phospho-acceptor) domain J162_04109 PF08521 Two-component sensor kinase N-terminal J162_04113 PF00595 PDZ domain J162_04117 PF01594 AI-2E family transporter J162_04118 PF13419 Haloacid dehalogenase-like hydrolase J162_04119 PF02789 Cytosol aminopeptidase family, N-terminal domain J162_04119 PF00883 Cytosol aminopeptidase family, catalytic domain J162_04121 PF04542 Sigma-70 region 2 J162_04121 PF08281 Sigma-70, region 4 J162_04122 PF00199 Catalase J162_04125 PF00196 Bacterial regulatory proteins, luxR family J162_04125 PF00072 Response regulator receiver domain J162_04126 PF07730 Histidine kinase J162_04127 PF13533 Biotin-lipoyl like J162_04128 PF00005 ABC transporter J162_04132 PF00892 EamA-like transporter family J162_04133 PF00892 EamA-like transporter family J162_04134 PF00892 EamA-like transporter family J162_04137 PF00753 Metallo-beta-lactamase superfamily J162_04138 PF00579 tRNA synthetases class I (W and Y) J162_04139 PF05532 CsbD-like J162_04142 PF00491 Arginase family J162_04147 PF02223 Thymidylate kinase J162_04150 PF03309 Type III pantothenate kinase J162_04151 PF08279 HTH domain J162_04151 PF03099 Biotin/lipoate A/B protein ligase family J162_04151 PF02237 Biotin protein ligase C terminal domain J162_04153 PF06167 Glucose-regulated metallo-peptidase M90 J162_04156 PF00512 His Kinase A (phospho-acceptor) domain J162_04156 PF00672 HAMP domain J162_04156 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_04157 PF00072 Response regulator receiver domain J162_04157 PF00486 Transcriptional regulatory protein, C terminal J162_04159 PF01207 Dihydrouridine synthase (Dus) J162_04162 PF00199 Catalase J162_04162 PF06628 Catalase-related immune-responsive J162_04163 PF13307 Helicase C-terminal domain J162_04163 PF06733 DEAD_2 J162_04166 PF01488 Shikimate / quinate 5-dehydrogenase J162_04166 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J162_04166 PF08501 Shikimate dehydrogenase substrate binding domain J162_04168 PF00175 Oxidoreductase NAD-binding domain J162_04168 PF00667 FAD binding domain J162_04168 PF00258 Flavodoxin J162_04170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_04170 PF03466 LysR substrate binding domain J162_04172 PF00490 Delta-aminolevulinic acid dehydratase J162_04176 PF00326 Prolyl oligopeptidase family J162_04176 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J162_04177 PF02798 Glutathione S-transferase, N-terminal domain J162_04177 PF00043 Glutathione S-transferase, C-terminal domain J162_04181 PF04820 Tryptophan halogenase J162_04184 PF00005 ABC transporter J162_04186 PF01381 Helix-turn-helix J162_04188 PF01229 Glycosyl hydrolases family 39 J162_04189 PF02583 Metal-sensitive transcriptional repressor J162_04190 PF01545 Cation efflux family J162_04190 PF16916 Dimerisation domain of Zinc Transporter J162_04192 PF00593 TonB dependent receptor J162_04192 PF07715 TonB-dependent Receptor Plug Domain J162_04194 PF01965 DJ-1/PfpI family J162_04194 PF12833 Helix-turn-helix domain J162_04195 PF00111 2Fe-2S iron-sulfur cluster binding domain J162_04195 PF00970 Oxidoreductase FAD-binding domain J162_04195 PF00175 Oxidoreductase NAD-binding domain J162_04196 PF00005 ABC transporter J162_04197 PF01061 ABC-2 type transporter J162_04200 PF02558 Ketopantoate reductase PanE/ApbA J162_04200 PF08546 Ketopantoate reductase PanE/ApbA C terminal J162_04206 PF00268 Ribonucleotide reductase, small chain J162_04207 PF03477 ATP cone domain J162_04207 PF00317 Ribonucleotide reductase, all-alpha domain J162_04207 PF02867 Ribonucleotide reductase, barrel domain J162_04209 PF13607 Succinyl-CoA ligase like flavodoxin domain J162_04209 PF13380 CoA binding domain J162_04209 PF00583 Acetyltransferase (GNAT) family J162_04210 PF00571 CBS domain J162_04210 PF01769 Divalent cation transporter J162_04210 PF03448 MgtE intracellular N domain J162_04211 PF00194 Eukaryotic-type carbonic anhydrase J162_04212 PF02254 TrkA-N domain J162_04212 PF00999 Sodium/hydrogen exchanger family J162_04213 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J162_04213 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J162_04214 PF00723 Glycosyl hydrolases family 15 J162_04217 PF05166 YcgL domain J162_04218 PF02801 Beta-ketoacyl synthase, C-terminal domain J162_04218 PF00109 Beta-ketoacyl synthase, N-terminal domain J162_04220 PF00535 Glycosyl transferase family 2 J162_04231 PF07977 FabA-like domain J162_04232 PF01553 Acyltransferase J162_04234 PF00550 Phosphopantetheine attachment site J162_04235 PF04820 Tryptophan halogenase J162_04239 PF00326 Prolyl oligopeptidase family J162_04239 PF07676 WD40-like Beta Propeller Repeat J162_04242 PF01218 Coproporphyrinogen III oxidase J162_04243 PF01367 5'-3' exonuclease, C-terminal SAM fold J162_04243 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J162_04243 PF01612 3'-5' exonuclease J162_04243 PF00476 DNA polymerase family A J162_04249 PF03793 PASTA domain J162_04249 PF00069 Protein kinase domain J162_04258 PF04717 Type VI secretion system, phage-baseplate injector J162_04261 PF03793 PASTA domain J162_04261 PF00069 Protein kinase domain J162_04263 PF04542 Sigma-70 region 2 J162_04263 PF08281 Sigma-70, region 4 J162_04266 PF00328 Histidine phosphatase superfamily (branch 2) J162_04273 PF00004 ATPase family associated with various cellular activities (AAA) J162_04273 PF07724 AAA domain (Cdc48 subfamily) J162_04273 PF17871 AAA lid domain J162_04273 PF10431 C-terminal, D2-small domain, of ClpB protein J162_04278 PF05638 Type VI secretion system effector, Hcp J162_04283 PF14602 Hexapeptide repeat of succinyl-transferase J162_04283 PF12464 Maltose acetyltransferase J162_04284 PF13361 UvrD-like helicase C-terminal domain J162_04284 PF00580 UvrD/REP helicase N-terminal domain J162_04286 PF13091 PLD-like domain J162_04286 PF13396 Phospholipase_D-nuclease N-terminal J162_04287 PF03466 LysR substrate binding domain J162_04287 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_04288 PF03737 Aldolase/RraA J162_04289 PF04303 PrpF protein J162_04290 PF04909 Amidohydrolase J162_04291 PF00471 Ribosomal protein L33 J162_04292 PF00830 Ribosomal L28 family J162_04293 PF00873 AcrB/AcrD/AcrF family J162_04294 PF13533 Biotin-lipoyl like J162_04298 PF02527 rRNA small subunit methyltransferase G J162_04299 PF09423 PhoD-like phosphatase J162_04299 PF16655 PhoD-like phosphatase, N-terminal domain J162_04301 PF16655 PhoD-like phosphatase, N-terminal domain J162_04301 PF09423 PhoD-like phosphatase J162_04302 PF01648 4'-phosphopantetheinyl transferase superfamily J162_04303 PF04226 Transglycosylase associated protein J162_04305 PF03372 Endonuclease/Exonuclease/phosphatase family J162_04307 PF00480 ROK family J162_04309 PF09312 SurA N-terminal domain J162_04311 PF00474 Sodium:solute symporter family J162_04312 PF04341 Protein of unknown function, DUF485 J162_04314 PF13193 AMP-binding enzyme C-terminal domain J162_04314 PF00501 AMP-binding enzyme J162_04314 PF16177 Acetyl-coenzyme A synthetase N-terminus J162_04315 PF00072 Response regulator receiver domain J162_04315 PF00196 Bacterial regulatory proteins, luxR family J162_04320 PF04616 Glycosyl hydrolases family 43 J162_04320 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J162_04321 PF00248 Aldo/keto reductase family J162_04324 PF01557 Fumarylacetoacetate (FAA) hydrolase family J162_04325 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J162_04325 PF13378 Enolase C-terminal domain-like J162_04327 PF05336 L-rhamnose mutarotase J162_04328 PF07690 Major Facilitator Superfamily J162_04329 PF09339 IclR helix-turn-helix domain J162_04329 PF01614 Bacterial transcriptional regulator J162_04330 PF02659 Putative manganese efflux pump J162_04331 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_04331 PF00512 His Kinase A (phospho-acceptor) domain J162_04333 PF06165 Glycosyltransferase family 36 J162_04333 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J162_04336 PF13360 PQQ-like domain J162_04336 PF01011 PQQ enzyme repeat J162_04336 PF13570 PQQ-like domain J162_04340 PF04357 TamB, inner membrane protein subunit of TAM complex J162_04341 PF17243 POTRA domain TamA domain 1 J162_04341 PF01103 Surface antigen J162_04344 PF01527 Transposase J162_04346 PF00664 ABC transporter transmembrane region J162_04346 PF00005 ABC transporter J162_04346 PF03412 Peptidase C39 family J162_04348 PF02092 Glycyl-tRNA synthetase beta subunit J162_04348 PF05746 DALR anticodon binding domain J162_04349 PF02091 Glycyl-tRNA synthetase alpha subunit J162_04350 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J162_04350 PF00437 Type II/IV secretion system protein J162_04352 PF00117 Glutamine amidotransferase class-I J162_04352 PF00958 GMP synthase C terminal domain J162_04354 PF00902 Sec-independent protein translocase protein (TatC) J162_04355 PF02416 mttA/Hcf106 family J162_04356 PF02416 mttA/Hcf106 family J162_04358 PF00762 Ferrochelatase J162_04359 PF12697 Alpha/beta hydrolase family J162_04361 PF04381 Putative exonuclease, RdgC J162_04362 PF01171 PP-loop family J162_04364 PF00356 Bacterial regulatory proteins, lacI family J162_04365 PF07477 Glycosyl hydrolase family 67 C-terminus J162_04365 PF07488 Glycosyl hydrolase family 67 middle domain J162_04365 PF03648 Glycosyl hydrolase family 67 N-terminus J162_04367 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J162_04367 PF13378 Enolase C-terminal domain-like J162_04368 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J162_04368 PF04616 Glycosyl hydrolases family 43 J162_04369 PF01915 Glycosyl hydrolase family 3 C-terminal domain J162_04369 PF00933 Glycosyl hydrolase family 3 N terminal domain J162_04369 PF07691 PA14 domain J162_04369 PF14310 Fibronectin type III-like domain J162_04370 PF08125 Mannitol dehydrogenase C-terminal domain J162_04370 PF01232 Mannitol dehydrogenase Rossmann domain J162_04375 PF00171 Aldehyde dehydrogenase family J162_04378 PF00202 Aminotransferase class-III J162_04379 PF00202 Aminotransferase class-III J162_04381 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J162_04381 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J162_04384 PF08450 SMP-30/Gluconolactonase/LRE-like region J162_04385 PF00331 Glycosyl hydrolase family 10 J162_04386 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J162_04386 PF02837 Glycosyl hydrolases family 2, sugar binding domain J162_04386 PF16355 Domain of unknown function (DUF4982) J162_04386 PF00703 Glycosyl hydrolases family 2 J162_04386 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J162_04387 PF02614 Glucuronate isomerase J162_04388 PF03422 Carbohydrate binding module (family 6) J162_04388 PF00553 Cellulose binding domain J162_04388 PF00331 Glycosyl hydrolase family 10 J162_04390 PF00553 Cellulose binding domain J162_04390 PF00331 Glycosyl hydrolase family 10 J162_04390 PF03422 Carbohydrate binding module (family 6) J162_04394 PF04616 Glycosyl hydrolases family 43 J162_04404 PF08240 Alcohol dehydrogenase GroES-like domain J162_04404 PF00109 Beta-ketoacyl synthase, N-terminal domain J162_04404 PF00698 Acyl transferase domain J162_04404 PF02801 Beta-ketoacyl synthase, C-terminal domain J162_04404 PF16197 Ketoacyl-synthetase C-terminal extension J162_04404 PF00550 Phosphopantetheine attachment site J162_04404 PF14765 Polyketide synthase dehydratase J162_04404 PF00107 Zinc-binding dehydrogenase J162_04404 PF08659 KR domain J162_04405 PF01553 Acyltransferase J162_04407 PF00356 Bacterial regulatory proteins, lacI family J162_04410 PF04820 Tryptophan halogenase J162_04411 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J162_04412 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) J162_04414 PF04337 Protein of unknown function, DUF480 J162_04417 PF00580 UvrD/REP helicase N-terminal domain J162_04417 PF13361 UvrD-like helicase C-terminal domain J162_04418 PF00265 Thymidine kinase J162_04419 PF00360 Phytochrome region J162_04419 PF08446 PAS fold J162_04419 PF00512 His Kinase A (phospho-acceptor) domain J162_04419 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J162_04419 PF01590 GAF domain J162_04420 PF04349 Periplasmic glucan biosynthesis protein, MdoG J162_04422 PF06827 Zinc finger found in FPG and IleRS J162_04422 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J162_04422 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J162_04429 PF03594 Benzoate membrane transport protein J162_04430 PF01590 GAF domain J162_04430 PF08446 PAS fold J162_04430 PF00360 Phytochrome region J162_04430 PF13426 PAS domain J162_04431 PF01126 Heme oxygenase J162_04432 PF07690 Major Facilitator Superfamily J162_04433 PF01263 Aldose 1-epimerase J162_04435 PF02810 SEC-C motif J162_04436 PF01925 Sulfite exporter TauE/SafE J162_04440 PF01227 GTP cyclohydrolase I J162_04442 PF07869 Protein of unknown function (DUF1656) J162_04443 PF00529 HlyD membrane-fusion protein of T1SS J162_04443 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J162_04444 PF02321 Outer membrane efflux protein J162_04445 PF04632 Fusaric acid resistance protein family J162_04446 PF00083 Sugar (and other) transporter J162_04447 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family J162_04448 PF13396 Phospholipase_D-nuclease N-terminal J162_04448 PF13091 PLD-like domain J162_04453 PF01850 PIN domain J162_04458 PF00849 RNA pseudouridylate synthase J162_04460 PF01527 Transposase J162_04464 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J162_04464 PF00289 Biotin carboxylase, N-terminal domain J162_04464 PF02785 Biotin carboxylase C-terminal domain J162_04465 PF01425 Amidase J162_04472 PF13538 UvrD-like helicase C-terminal domain J162_04475 PF13361 UvrD-like helicase C-terminal domain J162_04475 PF12705 PD-(D/E)XK nuclease superfamily J162_04475 PF00580 UvrD/REP helicase N-terminal domain J162_04476 PF17946 RecC C-terminal domain J162_04478 PF00005 ABC transporter J162_04479 PF02405 Permease MlaE J162_04480 PF02470 MlaD protein J162_04481 PF05494 MlaC protein J162_04483 PF04333 MlaA lipoprotein J162_04485 PF00255 Glutathione peroxidase J162_04487 PF02646 RmuC family J162_04488 PF00107 Zinc-binding dehydrogenase J162_04488 PF08240 Alcohol dehydrogenase GroES-like domain J162_04489 PF03466 LysR substrate binding domain J162_04489 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J162_04491 PF13417 Glutathione S-transferase, N-terminal domain J162_04491 PF00043 Glutathione S-transferase, C-terminal domain J162_04493 PF13520 Amino acid permease J162_04494 PF07971 Glycosyl hydrolase family 92 J162_04494 PF17678 Glycosyl hydrolase family 92 N-terminal domain J162_04495 PF10947 Protein of unknown function (DUF2628) J162_04496 PF00990 Diguanylate cyclase, GGDEF domain J162_04497 PF17853 GGDEF-like domain J162_04497 PF05651 Putative sugar diacid recognition J162_04497 PF13556 PucR C-terminal helix-turn-helix domain J162_04498 PF02595 Glycerate kinase family J162_04499 PF07690 Major Facilitator Superfamily J162_04502 PF17785 PUA-like domain J162_04502 PF10672 S-adenosylmethionine-dependent methyltransferase J162_04504 PF03741 Integral membrane protein TerC family J162_04505 PF01694 Rhomboid family J162_04506 PF03009 Glycerophosphoryl diester phosphodiesterase family J162_04508 PF01569 PAP2 superfamily J162_04509 PF10396 GTP-binding protein TrmE N-terminus J162_04509 PF01926 50S ribosome-binding GTPase J162_04509 PF12631 MnmE helical domain J162_04510 PF01522 Polysaccharide deacetylase J162_04511 PF02096 60Kd inner membrane protein J162_04511 PF14849 YidC periplasmic domain J162_04512 PF00825 Ribonuclease P J162_04513 PF00468 Ribosomal protein L34