J162_00006 SM00857 Resolvase, N terminal domain J162_00007 SM00966 SpoVT / AbrB like domain J162_00029 SM00857 Resolvase, N terminal domain J162_00035 SM00670 Large family of predicted nucleotide-binding domains J162_00037 SM00857 Resolvase, N terminal domain J162_00095 SM00470 ParB-like nuclease domain J162_00102 SM00857 Resolvase, N terminal domain J162_00107 SM00670 Large family of predicted nucleotide-binding domains J162_00109 SM00857 Resolvase, N terminal domain J162_00110 SM00382 ATPases associated with a variety of cellular activities J162_00110 SM00760 Bacterial dnaA protein helix-turn-helix domain J162_00111 SM00480 DNA polymerase III beta subunit J162_00114 SM00387 Histidine kinase-like ATPases J162_00114 SM00433 TopoisomeraseII J162_00117 SM00028 Tetratricopeptide repeats J162_00124 SM00155 Phospholipase D. Active site motifs. J162_00127 SM00729 Elongator protein 3, MiaB family, Radical SAM J162_00133 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J162_00133 SM00245 tail specific protease J162_00141 SM00829 Enoylreductase J162_00166 SM00382 ATPases associated with a variety of cellular activities J162_00190 SM00487 DEAD-like helicases superfamily J162_00190 SM00490 helicase superfamily c-terminal domain J162_00194 SM00822 J162_00194 J162_00195 SM00822 J162_00195 J162_00244 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen J162_00248 SM00421 helix_turn_helix, Lux Regulon J162_00248 SM00448 cheY-homologous receiver domain J162_00252 SM00862 Transcriptional regulatory protein, C terminal J162_00268 SM00642 Alpha-amylase domain J162_00269 SM00642 Alpha-amylase domain J162_00270 SM00642 Alpha-amylase domain J162_00280 SM00354 helix_turn _helix lactose operon repressor J162_00288 SM00344 helix_turn_helix ASNC type J162_00292 SM00382 ATPases associated with a variety of cellular activities J162_00295 SM00382 ATPases associated with a variety of cellular activities J162_00301 SM00530 Helix-turn-helix XRE-family like proteins J162_00306 SM00855 Phosphoglycerate mutase family J162_00307 SM00867 YceI-like domain J162_00308 SM00155 Phospholipase D. Active site motifs. J162_00310 SM00563 Phosphate acyltransferases J162_00313 SM00028 Tetratricopeptide repeats J162_00315 SM00829 Enoylreductase J162_00318 SM01230 J162_00318 J162_00319 SM00938 Nitrogen regulatory protein P-II J162_00321 SM00387 Histidine kinase-like ATPases J162_00321 SM00388 His Kinase A (phosphoacceptor) domain J162_00322 SM00382 ATPases associated with a variety of cellular activities J162_00322 SM00448 cheY-homologous receiver domain J162_00334 SM00450 Rhodanese Homology Domain J162_00339 SM00387 Histidine kinase-like ATPases J162_00339 SM00388 His Kinase A (phosphoacceptor) domain J162_00340 SM00382 ATPases associated with a variety of cellular activities J162_00340 SM00448 cheY-homologous receiver domain J162_00362 SM00563 Phosphate acyltransferases J162_00368 SM00342 helix_turn_helix, arabinose operon control protein J162_00373 SM00100 Cyclic nucleotide-monophosphate binding domain J162_00373 SM00267 diguanylate cyclase J162_00378 SM00878 Biotin carboxylase C-terminal domain J162_00383 SM00953 J162_00383 J162_00391 SM00833 Cobalamin synthesis protein cobW C-terminal domain J162_00396 SM00347 helix_turn_helix multiple antibiotic resistance protein J162_00402 SM00829 Enoylreductase J162_00408 SM00487 DEAD-like helicases superfamily J162_00408 SM00490 helicase superfamily c-terminal domain J162_00408 SM00847 Helicase associated domain (HA2) Add an annotation J162_00433 SM00422 helix_turn_helix, mercury resistance J162_00440 SM00448 cheY-homologous receiver domain J162_00440 SM00862 Transcriptional regulatory protein, C terminal J162_00441 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_00441 SM00387 Histidine kinase-like ATPases J162_00441 SM00388 His Kinase A (phosphoacceptor) domain J162_00467 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J162_00468 SM00347 helix_turn_helix multiple antibiotic resistance protein J162_00472 SM00342 helix_turn_helix, arabinose operon control protein J162_00479 SM00420 helix_turn_helix, Deoxyribose operon repressor J162_00479 SM01134 J162_00479 J162_00482 SM00882 Coenzyme A transferase J162_00483 SM00882 Coenzyme A transferase J162_00487 SM00998 Adenylosuccinate lyase C-terminus J162_00491 SM00346 helix_turn_helix isocitrate lyase regulation J162_00492 SM00090 RIO-like kinase J162_00495 SM01228 J162_00495 J162_00506 SM00729 Elongator protein 3, MiaB family, Radical SAM J162_00506 SM00876 Biotin and Thiamin Synthesis associated domain J162_00511 SM00369 Leucine-rich repeats, typical (most populated) subfamily J162_00531 SM00382 ATPases associated with a variety of cellular activities J162_00543 SM00267 diguanylate cyclase J162_00545 SM00642 Alpha-amylase domain J162_00546 SM00642 Alpha-amylase domain J162_00548 SM00642 Alpha-amylase domain J162_00550 SM00642 Alpha-amylase domain J162_00559 SM00822 J162_00559 J162_00561 SM00487 DEAD-like helicases superfamily J162_00561 SM00490 helicase superfamily c-terminal domain J162_00564 SM00326 Src homology 3 domains J162_00565 SM00861 Transketolase, pyrimidine binding domain J162_00567 SM00237 Domains in Na-Ca exchangers and integrin-beta4 J162_00571 SM00347 helix_turn_helix multiple antibiotic resistance protein J162_00590 SM00271 DnaJ molecular chaperone homology domain J162_00594 SM00046 Diacylglycerol kinase catalytic domain (presumed) J162_00598 SM00903 Flavin reductase like domain J162_00602 SM00100 Cyclic nucleotide-monophosphate binding domain J162_00602 SM00419 helix_turn_helix, cAMP Regulatory protein J162_00612 SM00387 Histidine kinase-like ATPases J162_00612 SM00388 His Kinase A (phosphoacceptor) domain J162_00612 SM00448 cheY-homologous receiver domain J162_00613 SM00052 Putative diguanylate phosphodiesterase J162_00613 SM00267 diguanylate cyclase J162_00613 SM00448 cheY-homologous receiver domain J162_00624 SM00563 Phosphate acyltransferases J162_00628 SM01209 J162_00628 J162_00628 SM01210 J162_00628 J162_00630 SM00798 AICARFT/IMPCHase bienzyme J162_00630 SM00851 MGS-like domain J162_00633 SM00195 Dual specificity phosphatase, catalytic domain J162_00637 SM00563 Phosphate acyltransferases J162_00642 SM00530 Helix-turn-helix XRE-family like proteins J162_00647 SM00878 Biotin carboxylase C-terminal domain J162_00653 SM00342 helix_turn_helix, arabinose operon control protein J162_00655 SM00234 in StAR and phosphatidylcholine transfer protein J162_00659 SM00883 Chaperonin 10 Kd subunit J162_00670 SM00944 Pro-kumamolisin, activation domain J162_00673 SM00867 YceI-like domain J162_00684 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. J162_00686 SM00345 helix_turn_helix gluconate operon transcriptional repressor J162_00686 SM00895 J162_00686 J162_00690 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_00690 SM00331 Sigma factor PP2C-like phosphatases J162_00698 SM00342 helix_turn_helix, arabinose operon control protein J162_00710 SM00267 diguanylate cyclase J162_00715 SM00062 Bacterial periplasmic substrate-binding proteins J162_00724 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain J162_00724 SM01232 J162_00724 J162_00726 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J162_00729 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J162_00729 SM00091 PAS domain J162_00729 SM00267 diguanylate cyclase J162_00730 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_00730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_00730 SM01049 J162_00730 J162_00731 SM00637 J162_00731 J162_00733 SM00267 diguanylate cyclase J162_00739 SM00448 cheY-homologous receiver domain J162_00739 SM00850 LytTr DNA-binding domain J162_00755 SM00382 ATPases associated with a variety of cellular activities J162_00755 SM01086 C-terminal, D2-small domain, of ClpB protein J162_00761 SM00267 diguanylate cyclase J162_00762 SM01263 J162_00762 J162_00765 SM00564 beta-propeller repeat J162_00766 SM00062 Bacterial periplasmic substrate-binding proteins J162_00766 SM00248 ankyrin repeats J162_00769 SM00829 Enoylreductase J162_00771 SM00382 ATPases associated with a variety of cellular activities J162_00773 SM00268 Actin J162_00778 SM00710 Parallel beta-helix repeats J162_00781 SM00936 Penicillin-binding protein 5, C-terminal domain J162_00785 SM00729 Elongator protein 3, MiaB family, Radical SAM J162_00786 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J162_00786 SM00245 tail specific protease J162_00797 SM01350 J162_00797 J162_00799 SM00749 bacterial OsmY and nodulation domain J162_00800 SM00387 Histidine kinase-like ATPases J162_00800 SM00388 His Kinase A (phosphoacceptor) domain J162_00801 SM00448 cheY-homologous receiver domain J162_00802 SM00387 Histidine kinase-like ATPases J162_00802 SM00388 His Kinase A (phosphoacceptor) domain J162_00802 SM00448 cheY-homologous receiver domain J162_00808 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. J162_00813 SM00382 ATPases associated with a variety of cellular activities J162_00829 SM00345 helix_turn_helix gluconate operon transcriptional repressor J162_00829 SM00866 J162_00829 J162_00831 SM00354 helix_turn _helix lactose operon repressor J162_00845 SM00849 Metallo-beta-lactamase superfamily J162_00846 SM00342 helix_turn_helix, arabinose operon control protein J162_00848 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_00848 SM00387 Histidine kinase-like ATPases J162_00848 SM00388 His Kinase A (phosphoacceptor) domain J162_00849 SM00448 cheY-homologous receiver domain J162_00849 SM00862 Transcriptional regulatory protein, C terminal J162_00853 SM00829 Enoylreductase J162_00856 SM00345 helix_turn_helix gluconate operon transcriptional repressor J162_00860 SM00382 ATPases associated with a variety of cellular activities J162_00873 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J162_00879 SM00387 Histidine kinase-like ATPases J162_00879 SM00388 His Kinase A (phosphoacceptor) domain J162_00880 SM00448 cheY-homologous receiver domain J162_00880 SM00862 Transcriptional regulatory protein, C terminal J162_00904 SM00842 Cell division protein FtsA J162_00905 SM00864 Tubulin/FtsZ family, GTPase domain J162_00905 SM00865 Tubulin/FtsZ family, C-terminal domain J162_00909 SM00957 SecA DEAD-like domain J162_00909 SM00958 SecA preprotein cross-linking domain J162_00915 SM00829 Enoylreductase J162_00916 SM00944 Pro-kumamolisin, activation domain J162_00919 SM00642 Alpha-amylase domain J162_00926 SM00996 S-adenosyl-L-homocysteine hydrolase J162_00926 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain J162_00951 SM00382 ATPases associated with a variety of cellular activities J162_00955 SM00382 ATPases associated with a variety of cellular activities J162_00957 SM00448 cheY-homologous receiver domain J162_00957 SM00862 Transcriptional regulatory protein, C terminal J162_00958 SM00387 Histidine kinase-like ATPases J162_00958 SM00388 His Kinase A (phosphoacceptor) domain J162_00968 SM00382 ATPases associated with a variety of cellular activities J162_00970 SM00382 ATPases associated with a variety of cellular activities J162_00983 SM00382 ATPases associated with a variety of cellular activities J162_00986 SM00650 Ribosomal RNA adenine dimethylases J162_00991 SM00108 Bulb-type mannose-specific lectin J162_01000 SM00345 helix_turn_helix gluconate operon transcriptional repressor J162_01000 SM00895 J162_01000 J162_01007 SM00347 helix_turn_helix multiple antibiotic resistance protein J162_01019 SM00448 cheY-homologous receiver domain J162_01020 SM00387 Histidine kinase-like ATPases J162_01020 SM00388 His Kinase A (phosphoacceptor) domain J162_01020 SM00448 cheY-homologous receiver domain J162_01021 SM00421 helix_turn_helix, Lux Regulon J162_01034 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs J162_01034 SM00475 5'-3' exonuclease J162_01040 SM01002 Alanine dehydrogenase/PNT, C-terminal domain J162_01040 SM01003 Alanine dehydrogenase/PNT, N-terminal domain J162_01064 SM00852 Probable molybdopterin binding domain J162_01065 SM00028 Tetratricopeptide repeats J162_01066 SM00937 J162_01066 J162_01068 SM00028 Tetratricopeptide repeats J162_01072 SM01400 J162_01072 J162_01082 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. J162_01082 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. J162_01083 SM00649 Ribosomal protein L11/L12 J162_01089 SM00663 RNA polymerase I subunit A N-terminus J162_01092 SM00838 Elongation factor G C-terminus J162_01092 SM00889 Elongation factor G, domain IV J162_01094 SM01403 J162_01094 J162_01098 SM01382 J162_01098 J162_01098 SM01383 J162_01098 J162_01101 SM00322 K homology RNA-binding domain J162_01105 SM01374 J162_01105 J162_01106 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. J162_01118 SM00363 S4 RNA-binding domain J162_01118 SM01390 J162_01118 J162_01119 SM00662 RNA polymerases D J162_01127 SM00838 Elongation factor G C-terminus J162_01133 SM00829 Enoylreductase J162_01142 SM00382 ATPases associated with a variety of cellular activities J162_01144 SM00829 Enoylreductase J162_01149 SM00855 Phosphoglycerate mutase family J162_01160 SM00014 Acid phosphatase homologues J162_01164 SM00091 PAS domain J162_01164 SM00387 Histidine kinase-like ATPases J162_01164 SM00388 His Kinase A (phosphoacceptor) domain J162_01165 SM00448 cheY-homologous receiver domain J162_01165 SM00862 Transcriptional regulatory protein, C terminal J162_01169 SM01329 J162_01169 J162_01203 SM00387 Histidine kinase-like ATPases J162_01204 SM00091 PAS domain J162_01208 SM00382 ATPases associated with a variety of cellular activities J162_01208 SM00994 ClpX C4-type zinc finger J162_01208 SM01086 C-terminal, D2-small domain, of ClpB protein J162_01209 SM00382 ATPases associated with a variety of cellular activities J162_01209 SM00464 Found in ATP-dependent protease La (LON) J162_01210 SM00411 bacterial (prokaryotic) histone like domain J162_01216 SM00257 Lysin motif J162_01217 SM00849 Metallo-beta-lactamase superfamily J162_01220 SM00479 J162_01220 J162_01221 SM00331 Sigma factor PP2C-like phosphatases J162_01221 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain J162_01226 SM00849 Metallo-beta-lactamase superfamily J162_01227 SM00729 Elongator protein 3, MiaB family, Radical SAM J162_01240 SM00382 ATPases associated with a variety of cellular activities J162_01242 SM00493 J162_01242 J162_01245 SM00460 Transglutaminase/protease-like homologues J162_01247 SM00382 ATPases associated with a variety of cellular activities J162_01256 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. J162_01257 SM00822 J162_01257 J162_01259 SM00825 Beta-ketoacyl synthase J162_01266 SM00382 ATPases associated with a variety of cellular activities J162_01275 SM01359 J162_01275 J162_01275 SM01360 J162_01275 J162_01282 SM00271 DnaJ molecular chaperone homology domain J162_01284 SM00448 cheY-homologous receiver domain J162_01286 SM00244 prohibitin homologues J162_01287 SM00244 prohibitin homologues J162_01288 SM01321 J162_01288 J162_01289 SM00788 Adenylosuccinate synthetase J162_01292 SM00822 J162_01292 J162_01302 SM00220 Serine/Threonine protein kinases, catalytic domain J162_01306 SM00855 Phosphoglycerate mutase family J162_01317 SM00052 Putative diguanylate phosphodiesterase J162_01318 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J162_01320 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J162_01321 SM01092 CO dehydrogenase flavoprotein C-terminal domain J162_01324 SM00974 J162_01324 J162_01328 SM00966 SpoVT / AbrB like domain J162_01332 SM00481 DNA polymerase alpha chain like domain J162_01334 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J162_01341 SM00091 PAS domain J162_01341 SM00342 helix_turn_helix, arabinose operon control protein J162_01346 SM01060 J162_01346 J162_01358 SM00448 cheY-homologous receiver domain J162_01358 SM00862 Transcriptional regulatory protein, C terminal J162_01359 SM00387 Histidine kinase-like ATPases J162_01359 SM00388 His Kinase A (phosphoacceptor) domain J162_01366 SM00421 helix_turn_helix, Lux Regulon J162_01366 SM00448 cheY-homologous receiver domain J162_01369 SM00478 endonuclease III J162_01373 SM00244 prohibitin homologues J162_01391 SM00904 Riboflavin kinase J162_01400 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J162_01401 SM00382 ATPases associated with a variety of cellular activities J162_01403 SM00862 Transcriptional regulatory protein, C terminal J162_01404 SM00342 helix_turn_helix, arabinose operon control protein J162_01411 SM00387 Histidine kinase-like ATPases J162_01411 SM00388 His Kinase A (phosphoacceptor) domain J162_01412 SM00387 Histidine kinase-like ATPases J162_01412 SM00388 His Kinase A (phosphoacceptor) domain J162_01412 SM00448 cheY-homologous receiver domain J162_01417 SM00387 Histidine kinase-like ATPases J162_01417 SM00388 His Kinase A (phosphoacceptor) domain J162_01417 SM00448 cheY-homologous receiver domain J162_01419 SM00138 Methyltransferase, chemotaxis proteins J162_01420 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J162_01420 SM00387 Histidine kinase-like ATPases J162_01420 SM00388 His Kinase A (phosphoacceptor) domain J162_01420 SM00448 cheY-homologous receiver domain J162_01421 SM00091 PAS domain J162_01421 SM00387 Histidine kinase-like ATPases J162_01421 SM00388 His Kinase A (phosphoacceptor) domain J162_01422 SM00448 cheY-homologous receiver domain J162_01424 SM00813 Alpha-L-arabinofuranosidase C-terminus J162_01427 SM00382 ATPases associated with a variety of cellular activities J162_01427 SM00962 SRP54-type protein, GTPase domain J162_01427 SM00963 SRP54-type protein, helical bundle domain J162_01441 SM00533 DNA-binding domain of DNA mismatch repair MUTS family J162_01441 SM00534 ATPase domain of DNA mismatch repair MUTS family J162_01446 SM00812 Alpha-L-fucosidase J162_01451 SM00530 Helix-turn-helix XRE-family like proteins J162_01461 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J162_01462 SM00838 Elongation factor G C-terminus J162_01465 SM00358 Double-stranded RNA binding motif J162_01465 SM00535 Ribonuclease III family J162_01468 SM00448 cheY-homologous receiver domain J162_01470 SM01118 J162_01470 J162_01477 SM00357 Cold shock protein domain J162_01480 SM00487 DEAD-like helicases superfamily J162_01480 SM00490 helicase superfamily c-terminal domain J162_01486 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J162_01486 SM00267 diguanylate cyclase J162_01490 SM00869 Autotransporter beta-domain J162_01491 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J162_01492 SM00671 Sel1-like repeats. J162_01492 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. J162_01531 SM00382 ATPases associated with a variety of cellular activities J162_01548 SM00481 DNA polymerase alpha chain like domain J162_01556 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J162_01562 SM00267 diguanylate cyclase J162_01567 SM00972 Spore Coat Protein U domain J162_01570 SM00972 Spore Coat Protein U domain J162_01572 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J162_01576 SM01172 J162_01576 J162_01577 SM00710 Parallel beta-helix repeats J162_01577 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses J162_01584 SM00434 DNA Topoisomerase IV J162_01585 SM00342 helix_turn_helix, arabinose operon control protein J162_01586 SM00347 helix_turn_helix multiple antibiotic resistance protein J162_01591 SM01217 J162_01591 J162_01592 SM00631 J162_01592 J162_01598 SM00347 helix_turn_helix multiple antibiotic resistance protein J162_01602 SM00382 ATPases associated with a variety of cellular activities J162_01605 SM00947 Carbonic anhydrase J162_01608 SM00357 Cold shock protein domain J162_01631 SM00267 diguanylate cyclase J162_01633 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J162_01633 SM00267 diguanylate cyclase J162_01669 SM00271 DnaJ molecular chaperone homology domain J162_01678 SM00382 ATPases associated with a variety of cellular activities J162_01683 SM00861 Transketolase, pyrimidine binding domain J162_01685 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. J162_01689 SM00116 Domain in cystathionine beta-synthase and other proteins. J162_01689 SM01091 Transporter associated domain J162_01695 SM00382 ATPases associated with a variety of cellular activities J162_01696 SM00345 helix_turn_helix gluconate operon transcriptional repressor J162_01700 SM00984 UDP binding domain J162_01704 SM00354 helix_turn _helix lactose operon repressor J162_01708 SM01018 B12 binding domain J162_01710 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor J162_01714 SM00316 Ribosomal protein S1-like RNA-binding domain J162_01714 SM00357 Cold shock protein domain J162_01714 SM00955 J162_01714 J162_01716 SM00967 RNA 2'-O ribose methyltransferase substrate binding J162_01717 SM00267 diguanylate cyclase J162_01718 SM00479 J162_01718 J162_01721 SM00382 ATPases associated with a variety of cellular activities J162_01728 SM00947 Carbonic anhydrase J162_01730 SM00478 endonuclease III J162_01735 SM00450 Rhodanese Homology Domain J162_01737 SM00644 J162_01737 J162_01741 SM00382 ATPases associated with a variety of cellular activities J162_01742 SM00981 J162_01742 J162_01747 SM00479 J162_01747 J162_01752 SM00947 Carbonic anhydrase J162_01761 SM00421 helix_turn_helix, Lux Regulon J162_01761 SM00448 cheY-homologous receiver domain J162_01773 SM00968 SMC proteins Flexible Hinge Domain J162_01774 SM00771 ZipA, C-terminal domain (FtsZ-binding) J162_01777 SM00292 breast cancer carboxy-terminal domain J162_01777 SM00532 Ligase N family J162_01781 SM00434 DNA Topoisomerase IV J162_01782 SM00564 beta-propeller repeat J162_01789 SM00345 helix_turn_helix gluconate operon transcriptional repressor J162_01789 SM00866 J162_01789 J162_01794 SM00240 Forkhead associated domain J162_01798 SM00830 Chorismate mutase type II J162_01807 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_01807 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_01809 SM00347 helix_turn_helix multiple antibiotic resistance protein J162_01810 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J162_01810 SM00091 PAS domain J162_01810 SM00387 Histidine kinase-like ATPases J162_01810 SM00388 His Kinase A (phosphoacceptor) domain J162_01810 SM00448 cheY-homologous receiver domain J162_01811 SM00448 cheY-homologous receiver domain J162_01812 SM00382 ATPases associated with a variety of cellular activities J162_01813 SM00091 PAS domain J162_01813 SM00387 Histidine kinase-like ATPases J162_01813 SM00388 His Kinase A (phosphoacceptor) domain J162_01813 SM00448 cheY-homologous receiver domain J162_01844 SM00729 Elongator protein 3, MiaB family, Radical SAM J162_01846 SM00382 ATPases associated with a variety of cellular activities J162_01851 SM00116 Domain in cystathionine beta-synthase and other proteins. J162_01851 SM01091 Transporter associated domain J162_01856 SM00387 Histidine kinase-like ATPases J162_01856 SM00433 TopoisomeraseII J162_01861 SM01192 J162_01861 J162_01861 SM01193 J162_01861 J162_01866 SM00463 Small MutS-related domain J162_01870 SM00257 Lysin motif J162_01873 SM01103 J162_01873 J162_01875 SM00382 ATPases associated with a variety of cellular activities J162_01883 SM00382 ATPases associated with a variety of cellular activities J162_01885 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain J162_01888 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J162_01888 SM00091 PAS domain J162_01888 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_01898 SM00670 Large family of predicted nucleotide-binding domains J162_01902 SM01130 J162_01902 J162_01907 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J162_01916 SM00758 J162_01916 J162_01923 SM00646 J162_01923 J162_01939 SM00052 Putative diguanylate phosphodiesterase J162_01939 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J162_01939 SM00267 diguanylate cyclase J162_01941 SM00448 cheY-homologous receiver domain J162_01942 SM00387 Histidine kinase-like ATPases J162_01944 SM00014 Acid phosphatase homologues J162_01959 SM00912 haemagglutination activity domain J162_01969 SM00100 Cyclic nucleotide-monophosphate binding domain J162_01969 SM00419 helix_turn_helix, cAMP Regulatory protein J162_01984 SM01007 Class II Aldolase and Adducin N-terminal domain J162_01993 SM00841 Elongation factor P, C-terminal J162_01993 SM01185 J162_01993 J162_01994 SM00822 J162_01994 J162_01998 SM00899 J162_01998 J162_02005 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain J162_02007 SM00851 MGS-like domain J162_02007 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J162_02018 SM00850 LytTr DNA-binding domain J162_02019 SM00937 J162_02019 J162_02021 SM00448 cheY-homologous receiver domain J162_02021 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J162_02022 SM00073 Histidine Phosphotransfer domain J162_02022 SM00387 Histidine kinase-like ATPases J162_02022 SM00388 His Kinase A (phosphoacceptor) domain J162_02022 SM00448 cheY-homologous receiver domain J162_02027 SM00966 SpoVT / AbrB like domain J162_02031 SM00052 Putative diguanylate phosphodiesterase J162_02031 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J162_02031 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J162_02031 SM00091 PAS domain J162_02031 SM00267 diguanylate cyclase J162_02032 SM00448 cheY-homologous receiver domain J162_02034 SM00138 Methyltransferase, chemotaxis proteins J162_02035 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_02035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_02036 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_02036 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_02037 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_02037 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_02038 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_02038 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_02039 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_02039 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_02041 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_02041 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_02042 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_02045 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_02045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_02046 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_02046 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_02046 SM01049 J162_02046 J162_02048 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_02048 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_02049 SM00073 Histidine Phosphotransfer domain J162_02049 SM00260 Two component signalling adaptor domain J162_02049 SM00387 Histidine kinase-like ATPases J162_02049 SM01231 J162_02049 J162_02050 SM00448 cheY-homologous receiver domain J162_02052 SM00260 Two component signalling adaptor domain J162_02058 SM00220 Serine/Threonine protein kinases, catalytic domain J162_02072 SM00530 Helix-turn-helix XRE-family like proteins J162_02077 SM00073 Histidine Phosphotransfer domain J162_02077 SM00260 Two component signalling adaptor domain J162_02077 SM00387 Histidine kinase-like ATPases J162_02077 SM01231 J162_02077 J162_02079 SM00448 cheY-homologous receiver domain J162_02082 SM00382 ATPases associated with a variety of cellular activities J162_02082 SM00962 SRP54-type protein, GTPase domain J162_02085 SM00052 Putative diguanylate phosphodiesterase J162_02085 SM00267 diguanylate cyclase J162_02086 SM00267 diguanylate cyclase J162_02087 SM00267 diguanylate cyclase J162_02098 SM00382 ATPases associated with a variety of cellular activities J162_02109 SM00822 J162_02109 J162_02114 SM00382 ATPases associated with a variety of cellular activities J162_02115 SM00448 cheY-homologous receiver domain J162_02117 SM00421 helix_turn_helix, Lux Regulon J162_02117 SM00448 cheY-homologous receiver domain J162_02125 SM00047 Lysozyme subfamily 2 J162_02134 SM00260 Two component signalling adaptor domain J162_02134 SM00448 cheY-homologous receiver domain J162_02135 SM00858 J162_02135 J162_02138 SM00387 Histidine kinase-like ATPases J162_02139 SM00052 Putative diguanylate phosphodiesterase J162_02139 SM00267 diguanylate cyclase J162_02139 SM00448 cheY-homologous receiver domain J162_02140 SM00091 PAS domain J162_02140 SM00387 Histidine kinase-like ATPases J162_02141 SM00052 Putative diguanylate phosphodiesterase J162_02141 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J162_02141 SM00091 PAS domain J162_02141 SM00267 diguanylate cyclase J162_02143 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_02148 SM00382 ATPases associated with a variety of cellular activities J162_02148 SM01086 C-terminal, D2-small domain, of ClpB protein J162_02149 SM00316 Ribosomal protein S1-like RNA-binding domain J162_02153 SM00382 ATPases associated with a variety of cellular activities J162_02153 SM00843 J162_02153 J162_02157 SM00382 ATPases associated with a variety of cellular activities J162_02164 SM00562 J162_02164 J162_02166 SM00028 Tetratricopeptide repeats J162_02169 SM00564 beta-propeller repeat J162_02170 SM00382 ATPases associated with a variety of cellular activities J162_02171 SM00852 Probable molybdopterin binding domain J162_02172 SM00450 Rhodanese Homology Domain J162_02181 SM00852 Probable molybdopterin binding domain J162_02186 SM00529 Helix-turn-helix diphteria tox regulatory element J162_02188 SM00479 J162_02188 J162_02202 SM00316 Ribosomal protein S1-like RNA-binding domain J162_02202 SM00732 Likely ribonuclease with RNase H fold. J162_02203 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J162_02203 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J162_02203 SM00091 PAS domain J162_02203 SM00387 Histidine kinase-like ATPases J162_02203 SM00388 His Kinase A (phosphoacceptor) domain J162_02203 SM00448 cheY-homologous receiver domain J162_02204 SM00448 cheY-homologous receiver domain J162_02221 SM00382 ATPases associated with a variety of cellular activities J162_02232 SM00382 ATPases associated with a variety of cellular activities J162_02234 SM00849 Metallo-beta-lactamase superfamily J162_02237 SM00382 ATPases associated with a variety of cellular activities J162_02240 SM00226 Low molecular weight phosphatase family J162_02242 SM00278 Helix-hairpin-helix DNA-binding motif class 1 J162_02242 SM00465 GIY-YIG type nucleases (URI domain) J162_02248 SM00823 Phosphopantetheine attachment site J162_02255 SM00984 UDP binding domain J162_02259 SM00450 Rhodanese Homology Domain J162_02260 SM00421 helix_turn_helix, Lux Regulon J162_02260 SM00448 cheY-homologous receiver domain J162_02261 SM00316 Ribosomal protein S1-like RNA-binding domain J162_02262 SM00363 S4 RNA-binding domain J162_02270 SM01034 Sensors of blue-light using FAD J162_02290 SM00448 cheY-homologous receiver domain J162_02290 SM00850 LytTr DNA-binding domain J162_02293 SM00869 Autotransporter beta-domain J162_02297 SM00387 Histidine kinase-like ATPases J162_02297 SM00388 His Kinase A (phosphoacceptor) domain J162_02298 SM00421 helix_turn_helix, Lux Regulon J162_02298 SM00448 cheY-homologous receiver domain J162_02299 SM00869 Autotransporter beta-domain J162_02300 SM00052 Putative diguanylate phosphodiesterase J162_02305 SM01012 J162_02305 J162_02314 SM00342 helix_turn_helix, arabinose operon control protein J162_02315 SM00387 Histidine kinase-like ATPases J162_02316 SM00421 helix_turn_helix, Lux Regulon J162_02316 SM00448 cheY-homologous receiver domain J162_02317 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_02324 SM00530 Helix-turn-helix XRE-family like proteins J162_02338 SM00966 SpoVT / AbrB like domain J162_02343 SM00965 Secretin and TonB N terminus short domain J162_02348 SM00736 Dystroglycan-type cadherin-like domains. J162_02353 SM00382 ATPases associated with a variety of cellular activities J162_02364 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain J162_02364 SM00437 Bacterial DNA topoisomerase I DNA-binding domain J162_02389 SM00342 helix_turn_helix, arabinose operon control protein J162_02398 SM00487 DEAD-like helicases superfamily J162_02449 SM00116 Domain in cystathionine beta-synthase and other proteins. J162_02449 SM01240 J162_02449 J162_02454 SM00822 J162_02454 J162_02456 SM00028 Tetratricopeptide repeats J162_02458 SM00411 bacterial (prokaryotic) histone like domain J162_02459 SM00316 Ribosomal protein S1-like RNA-binding domain J162_02475 SM00354 helix_turn _helix lactose operon repressor J162_02480 SM00363 S4 RNA-binding domain J162_02485 SM00382 ATPases associated with a variety of cellular activities J162_02495 SM00357 Cold shock protein domain J162_02496 SM00382 ATPases associated with a variety of cellular activities J162_02497 SM00382 ATPases associated with a variety of cellular activities J162_02503 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J162_02505 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase J162_02508 SM00859 Semialdehyde dehydrogenase, NAD binding domain J162_02516 SM00840 J162_02516 J162_02520 SM01234 J162_02520 J162_02528 SM00849 Metallo-beta-lactamase superfamily J162_02533 SM00656 J162_02533 J162_02541 SM00841 Elongation factor P, C-terminal J162_02541 SM01185 J162_02541 J162_02543 SM00052 Putative diguanylate phosphodiesterase J162_02543 SM00267 diguanylate cyclase J162_02543 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_02550 SM00382 ATPases associated with a variety of cellular activities J162_02551 SM00487 DEAD-like helicases superfamily J162_02551 SM00490 helicase superfamily c-terminal domain J162_02556 SM00357 Cold shock protein domain J162_02557 SM01322 J162_02557 J162_02559 SM00052 Putative diguanylate phosphodiesterase J162_02559 SM00267 diguanylate cyclase J162_02562 SM00822 J162_02562 J162_02566 SM00853 MutL C terminal dimerisation domain J162_02566 SM01340 J162_02566 J162_02567 SM00646 J162_02567 J162_02574 SM00474 3'-5' exonuclease J162_02578 SM00528 Domain in histone-like proteins of HNS family J162_02596 SM00857 Resolvase, N terminal domain J162_02611 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J162_02611 SM00267 diguanylate cyclase J162_02612 SM00260 Two component signalling adaptor domain J162_02613 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_02613 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_02615 SM00487 DEAD-like helicases superfamily J162_02615 SM00490 helicase superfamily c-terminal domain J162_02626 SM00729 Elongator protein 3, MiaB family, Radical SAM J162_02631 SM00116 Domain in cystathionine beta-synthase and other proteins. J162_02631 SM01091 Transporter associated domain J162_02637 SM00382 ATPases associated with a variety of cellular activities J162_02643 SM01230 J162_02643 J162_02645 SM01230 J162_02645 J162_02647 SM00267 diguanylate cyclase J162_02647 SM00448 cheY-homologous receiver domain J162_02657 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J162_02657 SM00091 PAS domain J162_02657 SM00387 Histidine kinase-like ATPases J162_02657 SM00388 His Kinase A (phosphoacceptor) domain J162_02657 SM00448 cheY-homologous receiver domain J162_02657 SM01079 J162_02657 J162_02658 SM00448 cheY-homologous receiver domain J162_02658 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J162_02664 SM00354 helix_turn _helix lactose operon repressor J162_02677 SM01323 J162_02677 J162_02680 SM00344 helix_turn_helix ASNC type J162_02695 SM00387 Histidine kinase-like ATPases J162_02705 SM00944 Pro-kumamolisin, activation domain J162_02716 SM01130 J162_02716 J162_02721 SM00342 helix_turn_helix, arabinose operon control protein J162_02722 SM00382 ATPases associated with a variety of cellular activities J162_02722 SM00962 SRP54-type protein, GTPase domain J162_02722 SM00963 SRP54-type protein, helical bundle domain J162_02723 SM00478 endonuclease III J162_02725 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J162_02725 SM00091 PAS domain J162_02725 SM00387 Histidine kinase-like ATPases J162_02725 SM00388 His Kinase A (phosphoacceptor) domain J162_02725 SM00448 cheY-homologous receiver domain J162_02728 SM00465 GIY-YIG type nucleases (URI domain) J162_02734 SM00507 HNH nucleases J162_02735 SM00861 Transketolase, pyrimidine binding domain J162_02740 SM00849 Metallo-beta-lactamase superfamily J162_02757 SM00422 helix_turn_helix, mercury resistance J162_02758 SM00411 bacterial (prokaryotic) histone like domain J162_02759 SM00873 B3/4 domain J162_02759 SM00874 tRNA synthetase B5 domain J162_02759 SM00896 Ferredoxin-fold anticodon binding domain J162_02765 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain J162_02766 SM00354 helix_turn _helix lactose operon repressor J162_02767 SM00642 Alpha-amylase domain J162_02774 SM00642 Alpha-amylase domain J162_02784 SM00382 ATPases associated with a variety of cellular activities J162_02796 SM00487 DEAD-like helicases superfamily J162_02796 SM00490 helicase superfamily c-terminal domain J162_02845 SM01001 AIR carboxylase J162_02849 SM00316 Ribosomal protein S1-like RNA-binding domain J162_02849 SM00322 K homology RNA-binding domain J162_02850 SM01387 J162_02850 J162_02854 SM00316 Ribosomal protein S1-like RNA-binding domain J162_02854 SM00322 K homology RNA-binding domain J162_02864 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J162_02865 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J162_02874 SM00822 J162_02874 J162_02877 SM00052 Putative diguanylate phosphodiesterase J162_02877 SM00267 diguanylate cyclase J162_02877 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_02891 SM00859 Semialdehyde dehydrogenase, NAD binding domain J162_02897 SM00257 Lysin motif J162_02903 SM00729 Elongator protein 3, MiaB family, Radical SAM J162_02916 SM01160 J162_02916 J162_02927 SM00098 Alkaline phosphatase homologues J162_02928 SM00977 TilS substrate C-terminal domain J162_02931 SM01351 J162_02931 J162_02938 SM00316 Ribosomal protein S1-like RNA-binding domain J162_02964 SM00382 ATPases associated with a variety of cellular activities J162_02971 SM00448 cheY-homologous receiver domain J162_02971 SM00862 Transcriptional regulatory protein, C terminal J162_02972 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_02972 SM00387 Histidine kinase-like ATPases J162_02972 SM00388 His Kinase A (phosphoacceptor) domain J162_02978 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J162_02978 SM00267 diguanylate cyclase J162_02979 SM00363 S4 RNA-binding domain J162_02980 SM00052 Putative diguanylate phosphodiesterase J162_02980 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J162_02980 SM00091 PAS domain J162_02980 SM00267 diguanylate cyclase J162_02981 SM00487 DEAD-like helicases superfamily J162_02981 SM00490 helicase superfamily c-terminal domain J162_02990 SM00342 helix_turn_helix, arabinose operon control protein J162_02990 SM00478 endonuclease III J162_02990 SM01009 AlkA N-terminal domain J162_02994 SM00829 Enoylreductase J162_03008 SM00342 helix_turn_helix, arabinose operon control protein J162_03022 SM00645 Papain family cysteine protease J162_03023 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_03023 SM00387 Histidine kinase-like ATPases J162_03023 SM00388 His Kinase A (phosphoacceptor) domain J162_03024 SM00448 cheY-homologous receiver domain J162_03024 SM00862 Transcriptional regulatory protein, C terminal J162_03027 SM00487 DEAD-like helicases superfamily J162_03027 SM00490 helicase superfamily c-terminal domain J162_03027 SM00982 J162_03027 J162_03027 SM01058 CarD-like/TRCF domain J162_03034 SM00073 Histidine Phosphotransfer domain J162_03034 SM00260 Two component signalling adaptor domain J162_03034 SM00387 Histidine kinase-like ATPases J162_03034 SM01231 J162_03034 J162_03035 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_03035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_03036 SM00260 Two component signalling adaptor domain J162_03037 SM00052 Putative diguanylate phosphodiesterase J162_03037 SM00448 cheY-homologous receiver domain J162_03038 SM00138 Methyltransferase, chemotaxis proteins J162_03039 SM00448 cheY-homologous receiver domain J162_03040 SM00155 Phospholipase D. Active site motifs. J162_03043 SM00855 Phosphoglycerate mutase family J162_03053 SM00248 ankyrin repeats J162_03063 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J162_03064 SM01092 CO dehydrogenase flavoprotein C-terminal domain J162_03066 SM00829 Enoylreductase J162_03067 SM00267 diguanylate cyclase J162_03080 SM00732 Likely ribonuclease with RNase H fold. J162_03091 SM00411 bacterial (prokaryotic) histone like domain J162_03097 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain J162_03100 SM00382 ATPases associated with a variety of cellular activities J162_03106 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. J162_03107 SM00671 Sel1-like repeats. J162_03113 SM00054 EF-hand, calcium binding motif J162_03131 SM00116 Domain in cystathionine beta-synthase and other proteins. J162_03135 SM00382 ATPases associated with a variety of cellular activities J162_03144 SM00924 MgtE intracellular N domain J162_03150 SM00656 J162_03150 J162_03152 SM00421 helix_turn_helix, Lux Regulon J162_03158 SM00849 Metallo-beta-lactamase superfamily J162_03160 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. J162_03164 SM00422 helix_turn_helix, mercury resistance J162_03191 SM00342 helix_turn_helix, arabinose operon control protein J162_03193 SM00387 Histidine kinase-like ATPases J162_03193 SM00388 His Kinase A (phosphoacceptor) domain J162_03193 SM00448 cheY-homologous receiver domain J162_03194 SM00387 Histidine kinase-like ATPases J162_03194 SM00388 His Kinase A (phosphoacceptor) domain J162_03194 SM00448 cheY-homologous receiver domain J162_03196 SM00387 Histidine kinase-like ATPases J162_03196 SM00388 His Kinase A (phosphoacceptor) domain J162_03196 SM00448 cheY-homologous receiver domain J162_03197 SM00867 YceI-like domain J162_03199 SM00867 YceI-like domain J162_03211 SM00116 Domain in cystathionine beta-synthase and other proteins. J162_03217 SM00028 Tetratricopeptide repeats J162_03237 SM00812 Alpha-L-fucosidase J162_03238 SM00636 J162_03238 J162_03241 SM00758 J162_03241 J162_03241 SM01217 J162_03241 J162_03247 SM01149 J162_03247 J162_03254 SM00369 Leucine-rich repeats, typical (most populated) subfamily J162_03258 SM00260 Two component signalling adaptor domain J162_03260 SM00073 Histidine Phosphotransfer domain J162_03260 SM00260 Two component signalling adaptor domain J162_03260 SM00387 Histidine kinase-like ATPases J162_03260 SM00448 cheY-homologous receiver domain J162_03260 SM01231 J162_03260 J162_03261 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_03262 SM00260 Two component signalling adaptor domain J162_03263 SM00448 cheY-homologous receiver domain J162_03264 SM00448 cheY-homologous receiver domain J162_03269 SM00491 J162_03269 J162_03274 SM00954 Region found in RelA / SpoT proteins J162_03283 SM00382 ATPases associated with a variety of cellular activities J162_03283 SM00487 DEAD-like helicases superfamily J162_03283 SM00490 helicase superfamily c-terminal domain J162_03283 SM00847 Helicase associated domain (HA2) Add an annotation J162_03285 SM00341 Helicase and RNase D C-terminal J162_03285 SM00487 DEAD-like helicases superfamily J162_03285 SM00490 helicase superfamily c-terminal domain J162_03285 SM00956 J162_03285 J162_03287 SM00448 cheY-homologous receiver domain J162_03292 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_03292 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_03295 SM00448 cheY-homologous receiver domain J162_03296 SM00091 PAS domain J162_03296 SM00911 HWE histidine kinase J162_03307 SM00382 ATPases associated with a variety of cellular activities J162_03310 SM00278 Helix-hairpin-helix DNA-binding motif class 1 J162_03317 SM00834 Putative regulatory protein J162_03326 SM00382 ATPases associated with a variety of cellular activities J162_03346 SM00855 Phosphoglycerate mutase family J162_03357 SM00382 ATPases associated with a variety of cellular activities J162_03357 SM01086 C-terminal, D2-small domain, of ClpB protein J162_03358 SM00382 ATPases associated with a variety of cellular activities J162_03360 SM00062 Bacterial periplasmic substrate-binding proteins J162_03375 SM00564 beta-propeller repeat J162_03376 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_03397 SM01126 J162_03397 J162_03399 SM00881 CoA binding domain J162_03401 SM00387 Histidine kinase-like ATPases J162_03401 SM00388 His Kinase A (phosphoacceptor) domain J162_03402 SM00382 ATPases associated with a variety of cellular activities J162_03402 SM00448 cheY-homologous receiver domain J162_03417 SM00387 Histidine kinase-like ATPases J162_03417 SM00388 His Kinase A (phosphoacceptor) domain J162_03418 SM00448 cheY-homologous receiver domain J162_03418 SM00862 Transcriptional regulatory protein, C terminal J162_03421 SM00642 Alpha-amylase domain J162_03422 SM00528 Domain in histone-like proteins of HNS family J162_03424 SM00318 Staphylococcal nuclease homologues J162_03439 SM00387 Histidine kinase-like ATPases J162_03439 SM00388 His Kinase A (phosphoacceptor) domain J162_03440 SM00448 cheY-homologous receiver domain J162_03442 SM00646 J162_03442 J162_03451 SM00530 Helix-turn-helix XRE-family like proteins J162_03455 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J162_03455 SM00387 Histidine kinase-like ATPases J162_03459 SM00255 Toll - interleukin 1 - resistance J162_03463 SM00869 Autotransporter beta-domain J162_03473 SM00354 helix_turn _helix lactose operon repressor J162_03479 SM00967 RNA 2'-O ribose methyltransferase substrate binding J162_03500 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J162_03500 SM00387 Histidine kinase-like ATPases J162_03506 SM00506 Appr-1"-p processing enzyme J162_03515 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J162_03520 SM00849 Metallo-beta-lactamase superfamily J162_03523 SM00382 ATPases associated with a variety of cellular activities J162_03535 SM00861 Transketolase, pyrimidine binding domain J162_03538 SM00028 Tetratricopeptide repeats J162_03538 SM00327 von Willebrand factor (vWF) type A domain J162_03539 SM00327 von Willebrand factor (vWF) type A domain J162_03542 SM00382 ATPases associated with a variety of cellular activities J162_03544 SM00965 Secretin and TonB N terminus short domain J162_03555 SM00487 DEAD-like helicases superfamily J162_03555 SM00490 helicase superfamily c-terminal domain J162_03557 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J162_03557 SM00954 Region found in RelA / SpoT proteins J162_03558 SM01409 J162_03558 J162_03559 SM00072 Guanylate kinase homologues. J162_03564 SM00729 Elongator protein 3, MiaB family, Radical SAM J162_03570 SM01011 Aminopeptidase P, N-terminal domain J162_03585 SM00028 Tetratricopeptide repeats J162_03585 SM00382 ATPases associated with a variety of cellular activities J162_03585 SM00421 helix_turn_helix, Lux Regulon J162_03599 SM00464 Found in ATP-dependent protease La (LON) J162_03609 SM00342 helix_turn_helix, arabinose operon control protein J162_03610 SM00862 Transcriptional regulatory protein, C terminal J162_03614 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_03620 SM00917 LeuA allosteric (dimerisation) domain J162_03621 SM01329 J162_03621 J162_03625 SM00267 diguanylate cyclase J162_03635 SM00919 Malic enzyme, NAD binding domain J162_03635 SM01274 J162_03635 J162_03638 SM00387 Histidine kinase-like ATPases J162_03638 SM00388 His Kinase A (phosphoacceptor) domain J162_03638 SM00448 cheY-homologous receiver domain J162_03646 SM00421 helix_turn_helix, Lux Regulon J162_03646 SM00448 cheY-homologous receiver domain J162_03648 SM00387 Histidine kinase-like ATPases J162_03648 SM00388 His Kinase A (phosphoacceptor) domain J162_03649 SM00448 cheY-homologous receiver domain J162_03649 SM00862 Transcriptional regulatory protein, C terminal J162_03653 SM00822 J162_03653 J162_03654 SM00354 helix_turn _helix lactose operon repressor J162_03657 SM00642 Alpha-amylase domain J162_03659 SM01154 J162_03659 J162_03666 SM00450 Rhodanese Homology Domain J162_03679 SM00028 Tetratricopeptide repeats J162_03694 SM00345 helix_turn_helix gluconate operon transcriptional repressor J162_03694 SM00866 J162_03694 J162_03706 SM00382 ATPases associated with a variety of cellular activities J162_03711 SM01211 J162_03711 J162_03724 SM00656 J162_03724 J162_03730 SM00528 Domain in histone-like proteins of HNS family J162_03733 SM00382 ATPases associated with a variety of cellular activities J162_03739 SM00882 Coenzyme A transferase J162_03740 SM00882 Coenzyme A transferase J162_03743 SM00984 UDP binding domain J162_03748 SM00893 Electron transfer flavoprotein domain J162_03749 SM00893 Electron transfer flavoprotein domain J162_03763 SM00382 ATPases associated with a variety of cellular activities J162_03766 SM00116 Domain in cystathionine beta-synthase and other proteins. J162_03773 SM00487 DEAD-like helicases superfamily J162_03773 SM00490 helicase superfamily c-terminal domain J162_03780 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J162_03787 SM00825 Beta-ketoacyl synthase J162_03802 SM00382 ATPases associated with a variety of cellular activities J162_03806 SM00382 ATPases associated with a variety of cellular activities J162_03806 SM00387 Histidine kinase-like ATPases J162_03806 SM00448 cheY-homologous receiver domain J162_03809 SM00830 Chorismate mutase type II J162_03811 SM00382 ATPases associated with a variety of cellular activities J162_03825 SM00986 Uracil DNA glycosylase superfamily J162_03825 SM00987 UreE urease accessory protein, C-terminal domain J162_03831 SM00382 ATPases associated with a variety of cellular activities J162_03831 SM00930 J162_03831 J162_03835 SM00387 Histidine kinase-like ATPases J162_03835 SM00388 His Kinase A (phosphoacceptor) domain J162_03835 SM00448 cheY-homologous receiver domain J162_03845 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J162_03845 SM00091 PAS domain J162_03845 SM00387 Histidine kinase-like ATPases J162_03845 SM00388 His Kinase A (phosphoacceptor) domain J162_03845 SM00448 cheY-homologous receiver domain J162_03849 SM01005 Alanine racemase, C-terminal domain J162_03851 SM00344 helix_turn_helix ASNC type J162_03862 SM00382 ATPases associated with a variety of cellular activities J162_03864 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. J162_03865 SM00986 Uracil DNA glycosylase superfamily J162_03865 SM00987 UreE urease accessory protein, C-terminal domain J162_03866 SM00729 Elongator protein 3, MiaB family, Radical SAM J162_03879 SM00448 cheY-homologous receiver domain J162_03879 SM00850 LytTr DNA-binding domain J162_03880 SM00387 Histidine kinase-like ATPases J162_03887 SM00091 PAS domain J162_03887 SM00138 Methyltransferase, chemotaxis proteins J162_03887 SM00911 HWE histidine kinase J162_03888 SM00448 cheY-homologous receiver domain J162_03890 SM00382 ATPases associated with a variety of cellular activities J162_03890 SM00448 cheY-homologous receiver domain J162_03901 SM00382 ATPases associated with a variety of cellular activities J162_03916 SM00382 ATPases associated with a variety of cellular activities J162_03917 SM00631 J162_03917 J162_03925 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J162_03925 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_03926 SM00477 DNA/RNA non-specific endonuclease J162_03926 SM00892 DNA/RNA non-specific endonuclease J162_03957 SM00257 Lysin motif J162_03962 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain J162_03962 SM00437 Bacterial DNA topoisomerase I DNA-binding domain J162_03962 SM00493 J162_03962 J162_03973 SM00487 DEAD-like helicases superfamily J162_03973 SM00490 helicase superfamily c-terminal domain J162_03980 SM00986 Uracil DNA glycosylase superfamily J162_03980 SM00987 UreE urease accessory protein, C-terminal domain J162_03981 SM00448 cheY-homologous receiver domain J162_03983 SM00382 ATPases associated with a variety of cellular activities J162_03984 SM00487 DEAD-like helicases superfamily J162_03984 SM00490 helicase superfamily c-terminal domain J162_03986 SM00357 Cold shock protein domain J162_03986 SM00382 ATPases associated with a variety of cellular activities J162_03986 SM00959 Rho termination factor, N-terminal domain J162_03992 SM00487 DEAD-like helicases superfamily J162_04001 SM00257 Lysin motif J162_04007 SM01150 J162_04007 J162_04016 SM00644 J162_04016 J162_04018 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J162_04025 SM01217 J162_04025 J162_04026 SM00905 Dihydroneopterin aldolase J162_04031 SM00400 zinc finger J162_04031 SM00493 J162_04031 J162_04031 SM00766 DNA primase DnaG DnaB-binding J162_04053 SM00363 S4 RNA-binding domain J162_04062 SM00470 ParB-like nuclease domain J162_04066 SM01259 J162_04066 J162_04072 SM00836 DALR anticodon binding domain J162_04072 SM01016 Arginyl tRNA synthetase N terminal dom J162_04078 SM00823 Phosphopantetheine attachment site J162_04078 SM00824 Thioesterase J162_04085 SM00938 Nitrogen regulatory protein P-II J162_04087 SM00382 ATPases associated with a variety of cellular activities J162_04090 SM00052 Putative diguanylate phosphodiesterase J162_04098 SM00244 prohibitin homologues J162_04108 SM00448 cheY-homologous receiver domain J162_04108 SM00862 Transcriptional regulatory protein, C terminal J162_04109 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J162_04109 SM00387 Histidine kinase-like ATPases J162_04109 SM00388 His Kinase A (phosphoacceptor) domain J162_04113 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J162_04122 SM01060 J162_04122 J162_04125 SM00421 helix_turn_helix, Lux Regulon J162_04125 SM00448 cheY-homologous receiver domain J162_04128 SM00382 ATPases associated with a variety of cellular activities J162_04137 SM00849 Metallo-beta-lactamase superfamily J162_04143 SM00960 Roadblock/LC7 domain J162_04156 SM00387 Histidine kinase-like ATPases J162_04156 SM00388 His Kinase A (phosphoacceptor) domain J162_04157 SM00448 cheY-homologous receiver domain J162_04157 SM00862 Transcriptional regulatory protein, C terminal J162_04161 SM00248 ankyrin repeats J162_04162 SM01060 J162_04162 J162_04163 SM00491 J162_04163 J162_04169 SM00477 DNA/RNA non-specific endonuclease J162_04169 SM00892 DNA/RNA non-specific endonuclease J162_04172 SM01004 Delta-aminolevulinic acid dehydratase J162_04180 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. J162_04184 SM00382 ATPases associated with a variety of cellular activities J162_04186 SM00530 Helix-turn-helix XRE-family like proteins J162_04194 SM00342 helix_turn_helix, arabinose operon control protein J162_04196 SM00382 ATPases associated with a variety of cellular activities J162_04209 SM00881 CoA binding domain J162_04210 SM00116 Domain in cystathionine beta-synthase and other proteins. J162_04210 SM00924 MgtE intracellular N domain J162_04211 SM01057 Eukaryotic-type carbonic anhydrase J162_04216 SM00248 ankyrin repeats J162_04218 SM00825 Beta-ketoacyl synthase J162_04223 SM00822 J162_04223 J162_04232 SM00563 Phosphate acyltransferases J162_04243 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs J162_04243 SM00474 3'-5' exonuclease J162_04243 SM00475 5'-3' exonuclease J162_04243 SM00482 DNA polymerase A domain J162_04246 SM00912 haemagglutination activity domain J162_04250 SM00331 Sigma factor PP2C-like phosphatases J162_04250 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain J162_04256 SM00240 Forkhead associated domain J162_04259 SM00028 Tetratricopeptide repeats J162_04261 SM00220 Serine/Threonine protein kinases, catalytic domain J162_04265 SM00965 Secretin and TonB N terminus short domain J162_04267 SM00915 Jacalin-like lectin domain J162_04273 SM00382 ATPases associated with a variety of cellular activities J162_04273 SM01086 C-terminal, D2-small domain, of ClpB protein J162_04281 SM00342 helix_turn_helix, arabinose operon control protein J162_04283 SM01266 J162_04283 J162_04286 SM00155 Phospholipase D. Active site motifs. J162_04315 SM00421 helix_turn_helix, Lux Regulon J162_04315 SM00448 cheY-homologous receiver domain J162_04325 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J162_04329 SM00346 helix_turn_helix isocitrate lyase regulation J162_04331 SM00091 PAS domain J162_04331 SM00387 Histidine kinase-like ATPases J162_04331 SM00388 His Kinase A (phosphoacceptor) domain J162_04331 SM00448 cheY-homologous receiver domain J162_04336 SM00564 beta-propeller repeat J162_04346 SM00382 ATPases associated with a variety of cellular activities J162_04348 SM00836 DALR anticodon binding domain J162_04350 SM00382 ATPases associated with a variety of cellular activities J162_04364 SM00354 helix_turn _helix lactose operon repressor J162_04367 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J162_04369 SM00758 J162_04369 J162_04369 SM01217 J162_04369 J162_04373 SM00612 J162_04373 J162_04380 SM01007 Class II Aldolase and Adducin N-terminal domain J162_04385 SM00633 Glycosyl hydrolase family 10 J162_04388 SM00633 Glycosyl hydrolase family 10 J162_04390 SM00633 Glycosyl hydrolase family 10 J162_04404 SM00829 Enoylreductase J162_04405 SM00563 Phosphate acyltransferases J162_04407 SM00354 helix_turn _helix lactose operon repressor J162_04411 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family J162_04419 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J162_04419 SM00388 His Kinase A (phosphoacceptor) domain J162_04422 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain J162_04422 SM01232 J162_04422 J162_04430 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J162_04430 SM00091 PAS domain J162_04441 SM00347 helix_turn_helix multiple antibiotic resistance protein J162_04448 SM00155 Phospholipase D. Active site motifs. J162_04464 SM00796 Allophanate hydrolase subunit 1 J162_04464 SM00797 Allophanate hydrolase subunit 2 J162_04464 SM00878 Biotin carboxylase C-terminal domain J162_04478 SM00382 ATPases associated with a variety of cellular activities J162_04488 SM00829 Enoylreductase J162_04496 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J162_04496 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J162_04496 SM00091 PAS domain J162_04496 SM00267 diguanylate cyclase J162_04502 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase J162_04508 SM00014 Acid phosphatase homologues J162_04510 SM00028 Tetratricopeptide repeats