locus-tag class description J163_00004 PF01527 Transposase J163_00006 PF00239 Resolvase, N terminal domain J163_00006 PF02796 Helix-turn-helix domain of resolvase J163_00019 PF07015 VirC1 protein J163_00023 PF03377 TAL effector repeat J163_00027 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system J163_00029 PF00239 Resolvase, N terminal domain J163_00029 PF02796 Helix-turn-helix domain of resolvase J163_00034 PF13700 Domain of unknown function (DUF4158) J163_00034 PF01526 Tn3 transposase DDE domain J163_00037 PF02796 Helix-turn-helix domain of resolvase J163_00037 PF00239 Resolvase, N terminal domain J163_00038 PF03377 TAL effector repeat J163_00042 PF13614 AAA domain J163_00050 PF13406 Transglycosylase SLT domain J163_00051 PF01526 Tn3 transposase DDE domain J163_00051 PF13700 Domain of unknown function (DUF4158) J163_00055 PF03377 TAL effector repeat J163_00059 PF07015 VirC1 protein J163_00072 PF18340 DNA relaxase TraI 2B/2B-like domain J163_00072 PF08751 TrwC relaxase J163_00072 PF18340 DNA relaxase TraI 2B/2B-like domain J163_00072 PF07057 DNA helicase TraI J163_00072 PF18272 single-stranded DNA binding TraI N-terminal subdomain J163_00072 PF18272 single-stranded DNA binding TraI N-terminal subdomain J163_00072 PF07057 DNA helicase TraI J163_00072 PF08751 TrwC relaxase J163_00077 PF01464 Transglycosylase SLT domain J163_00078 PF00437 Type II/IV secretion system protein J163_00079 PF03743 Bacterial conjugation TrbI-like protein J163_00080 PF03524 Conjugal transfer protein J163_00092 PF01527 Transposase J163_00095 PF06613 KorB C-terminal beta-barrel domain J163_00095 PF02195 ParB-like nuclease domain J163_00095 PF08535 KorB domain J163_00096 PF13614 AAA domain J163_00101 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin J163_00102 PF00239 Resolvase, N terminal domain J163_00102 PF02796 Helix-turn-helix domain of resolvase J163_00103 PF13276 HTH-like domain J163_00103 PF00665 Integrase core domain J163_00103 PF13333 Integrase core domain J163_00104 PF00665 Integrase core domain J163_00104 PF13276 HTH-like domain J163_00104 PF13333 Integrase core domain J163_00105 PF03377 TAL effector repeat J163_00106 PF01526 Tn3 transposase DDE domain J163_00106 PF13700 Domain of unknown function (DUF4158) J163_00109 PF00239 Resolvase, N terminal domain J163_00109 PF02796 Helix-turn-helix domain of resolvase J163_00110 PF11638 DnaA N-terminal domain J163_00110 PF00308 Bacterial dnaA protein J163_00110 PF08299 Bacterial dnaA protein helix-turn-helix J163_00111 PF02768 DNA polymerase III beta subunit, C-terminal domain J163_00111 PF02767 DNA polymerase III beta subunit, central domain J163_00111 PF00712 DNA polymerase III beta subunit, N-terminal domain J163_00112 PF02463 RecF/RecN/SMC N terminal domain J163_00114 PF18053 DNA gyrase B subunit insert domain J163_00114 PF00986 DNA gyrase B subunit, carboxyl terminus J163_00114 PF00204 DNA gyrase B J163_00114 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_00114 PF01751 Toprim domain J163_00116 PF01435 Peptidase family M48 J163_00118 PF03544 Gram-negative bacterial TonB protein C-terminal J163_00119 PF01618 MotA/TolQ/ExbB proton channel family J163_00120 PF02472 Biopolymer transport protein ExbD/TolR J163_00121 PF02472 Biopolymer transport protein ExbD/TolR J163_00122 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ J163_00124 PF13396 Phospholipase_D-nuclease N-terminal J163_00124 PF13091 PLD-like domain J163_00127 PF04055 Radical SAM superfamily J163_00129 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J163_00132 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J163_00132 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J163_00133 PF13180 PDZ domain J163_00133 PF03572 Peptidase family S41 J163_00134 PF01551 Peptidase family M23 J163_00136 PF04389 Peptidase family M28 J163_00138 PF00150 Cellulase (glycosyl hydrolase family 5) J163_00139 PF00150 Cellulase (glycosyl hydrolase family 5) J163_00140 PF00150 Cellulase (glycosyl hydrolase family 5) J163_00141 PF08240 Alcohol dehydrogenase GroES-like domain J163_00141 PF00107 Zinc-binding dehydrogenase J163_00142 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J163_00142 PF07992 Pyridine nucleotide-disulphide oxidoreductase J163_00143 PF00310 Glutamine amidotransferases class-II J163_00143 PF01493 GXGXG motif J163_00143 PF01645 Conserved region in glutamate synthase J163_00143 PF04898 Glutamate synthase central domain J163_00147 PF01804 Penicillin amidase J163_00149 PF03466 LysR substrate binding domain J163_00149 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_00152 PF02397 Bacterial sugar transferase J163_00153 PF02350 UDP-N-acetylglucosamine 2-epimerase J163_00155 PF03808 Glycosyl transferase WecB/TagA/CpsF family J163_00156 PF00534 Glycosyl transferases group 1 J163_00156 PF13439 Glycosyltransferase Family 4 J163_00160 PF00733 Asparagine synthase J163_00160 PF13537 Glutamine amidotransferase domain J163_00163 PF16363 GDP-mannose 4,6 dehydratase J163_00166 PF00005 ABC transporter J163_00166 PF00664 ABC transporter transmembrane region J163_00168 PF13537 Glutamine amidotransferase domain J163_00168 PF00733 Asparagine synthase J163_00173 PF00685 Sulfotransferase domain J163_00190 PF00271 Helicase conserved C-terminal domain J163_00190 PF09369 Domain of unknown function (DUF1998) J163_00190 PF00270 DEAD/DEAH box helicase J163_00191 PF03006 Haemolysin-III related J163_00194 PF00106 short chain dehydrogenase J163_00196 PF03466 LysR substrate binding domain J163_00196 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_00200 PF02525 Flavodoxin-like fold J163_00202 PF01527 Transposase J163_00203 PF13333 Integrase core domain J163_00203 PF00665 Integrase core domain J163_00203 PF13276 HTH-like domain J163_00211 PF05532 CsbD-like J163_00215 PF01447 Thermolysin metallopeptidase, catalytic domain J163_00215 PF16485 Protealysin propeptide J163_00215 PF02868 Thermolysin metallopeptidase, alpha-helical domain J163_00217 PF00293 NUDIX domain J163_00217 PF13344 Haloacid dehalogenase-like hydrolase J163_00220 PF00085 Thioredoxin J163_00221 PF08946 Osmosensory transporter coiled coil J163_00221 PF00083 Sugar (and other) transporter J163_00229 PF17863 AAA lid domain J163_00229 PF07726 ATPase family associated with various cellular activities (AAA) J163_00235 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain J163_00236 PF00155 Aminotransferase class I and II J163_00237 PF00593 TonB dependent receptor J163_00237 PF07715 TonB-dependent Receptor Plug Domain J163_00239 PF07883 Cupin domain J163_00240 PF00171 Aldehyde dehydrogenase family J163_00244 PF02735 Ku70/Ku80 beta-barrel domain J163_00245 PF01070 FMN-dependent dehydrogenase J163_00246 PF00144 Beta-lactamase J163_00247 PF07730 Histidine kinase J163_00248 PF00196 Bacterial regulatory proteins, luxR family J163_00248 PF00072 Response regulator receiver domain J163_00252 PF18500 CadC C-terminal domain 1 J163_00252 PF00486 Transcriptional regulatory protein, C terminal J163_00253 PF12241 Trans-2-enoyl-CoA reductase catalytic region J163_00253 PF07055 Enoyl reductase FAD binding domain J163_00253 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J163_00255 PF00294 pfkB family carbohydrate kinase J163_00266 PF01527 Transposase J163_00267 PF00665 Integrase core domain J163_00267 PF13276 HTH-like domain J163_00267 PF13333 Integrase core domain J163_00268 PF00128 Alpha amylase, catalytic domain J163_00268 PF11896 Domain of unknown function (DUF3416) J163_00269 PF00128 Alpha amylase, catalytic domain J163_00269 PF16657 Maltogenic Amylase, C-terminal domain J163_00270 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J163_00270 PF00128 Alpha amylase, catalytic domain J163_00270 PF02806 Alpha amylase, C-terminal all-beta domain J163_00272 PF00248 Aldo/keto reductase family J163_00273 PF00135 Carboxylesterase family J163_00274 PF07859 alpha/beta hydrolase fold J163_00274 PF13472 GDSL-like Lipase/Acylhydrolase family J163_00276 PF03480 Bacterial extracellular solute-binding protein, family 7 J163_00278 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J163_00279 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J163_00279 PF04616 Glycosyl hydrolases family 43 J163_00280 PF00356 Bacterial regulatory proteins, lacI family J163_00281 PF04962 KduI/IolB family J163_00284 PF00657 GDSL-like Lipase/Acylhydrolase J163_00287 PF00351 Biopterin-dependent aromatic amino acid hydroxylase J163_00288 PF01037 Lrp/AsnC ligand binding domain J163_00289 PF07715 TonB-dependent Receptor Plug Domain J163_00289 PF00593 TonB dependent receptor J163_00289 PF07660 Secretin and TonB N terminus short domain J163_00290 PF01734 Patatin-like phospholipase J163_00292 PF00005 ABC transporter J163_00295 PF00005 ABC transporter J163_00296 PF00528 Binding-protein-dependent transport system inner membrane component J163_00298 PF03781 Sulfatase-modifying factor enzyme 1 J163_00298 PF12867 DinB superfamily J163_00301 PF01381 Helix-turn-helix J163_00305 PF01883 Iron-sulfur cluster assembly protein J163_00305 PF10609 NUBPL iron-transfer P-loop NTPase J163_00308 PF13091 PLD-like domain J163_00309 PF03061 Thioesterase superfamily J163_00315 PF00107 Zinc-binding dehydrogenase J163_00315 PF08240 Alcohol dehydrogenase GroES-like domain J163_00317 PF02673 Bacitracin resistance protein BacA J163_00318 PF00120 Glutamine synthetase, catalytic domain J163_00318 PF03951 Glutamine synthetase, beta-Grasp domain J163_00319 PF00543 Nitrogen regulatory protein P-II J163_00320 PF00909 Ammonium Transporter Family J163_00321 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_00321 PF00989 PAS fold J163_00321 PF00512 His Kinase A (phospho-acceptor) domain J163_00322 PF02954 Bacterial regulatory protein, Fis family J163_00322 PF00158 Sigma-54 interaction domain J163_00322 PF00072 Response regulator receiver domain J163_00323 PF00080 Copper/zinc superoxide dismutase (SODC) J163_00324 PF00080 Copper/zinc superoxide dismutase (SODC) J163_00325 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J163_00327 PF02803 Thiolase, C-terminal domain J163_00327 PF00108 Thiolase, N-terminal domain J163_00334 PF00581 Rhodanese-like domain J163_00335 PF02556 Preprotein translocase subunit SecB J163_00336 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J163_00336 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J163_00338 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J163_00338 PF00205 Thiamine pyrophosphate enzyme, central domain J163_00338 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J163_00339 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_00340 PF00072 Response regulator receiver domain J163_00340 PF00158 Sigma-54 interaction domain J163_00340 PF02954 Bacterial regulatory protein, Fis family J163_00343 PF07690 Major Facilitator Superfamily J163_00344 PF00588 SpoU rRNA Methylase family J163_00347 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J163_00347 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J163_00348 PF02661 Fic/DOC family J163_00348 PF13784 Fic/DOC family N-terminal J163_00349 PF00561 alpha/beta hydrolase fold J163_00350 PF03692 Putative zinc- or iron-chelating domain J163_00351 PF00501 AMP-binding enzyme J163_00353 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family J163_00355 PF07478 D-ala D-ala ligase C-terminus J163_00355 PF01820 D-ala D-ala ligase N-terminus J163_00357 PF03109 ABC1 family J163_00359 PF00849 RNA pseudouridylate synthase J163_00361 PF00472 RF-1 domain J163_00363 PF01112 Asparaginase J163_00364 PF01432 Peptidase family M3 J163_00365 PF12706 Beta-lactamase superfamily domain J163_00368 PF12833 Helix-turn-helix domain J163_00369 PF00999 Sodium/hydrogen exchanger family J163_00370 PF03466 LysR substrate binding domain J163_00370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_00371 PF01274 Malate synthase J163_00372 PF00463 Isocitrate lyase family J163_00373 PF00990 Diguanylate cyclase, GGDEF domain J163_00377 PF00326 Prolyl oligopeptidase family J163_00378 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J163_00378 PF00364 Biotin-requiring enzyme J163_00378 PF00289 Biotin carboxylase, N-terminal domain J163_00378 PF02785 Biotin carboxylase C-terminal domain J163_00379 PF01039 Carboxyl transferase domain J163_00380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J163_00380 PF02770 Acyl-CoA dehydrogenase, middle domain J163_00380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J163_00391 PF07683 Cobalamin synthesis protein cobW C-terminal domain J163_00391 PF02492 CobW/HypB/UreG, nucleotide-binding domain J163_00395 PF03969 AFG1-like ATPase J163_00396 PF01047 MarR family J163_00397 PF02566 OsmC-like protein J163_00402 PF00107 Zinc-binding dehydrogenase J163_00402 PF16884 N-terminal domain of oxidoreductase J163_00405 PF00849 RNA pseudouridylate synthase J163_00406 PF00593 TonB dependent receptor J163_00408 PF00270 DEAD/DEAH box helicase J163_00408 PF04408 Helicase associated domain (HA2) J163_00408 PF00271 Helicase conserved C-terminal domain J163_00408 PF08482 ATP-dependent helicase C-terminal J163_00409 PF07308 Protein of unknown function (DUF1456) J163_00410 PF00576 HIUase/Transthyretin family J163_00411 PF13454 FAD-NAD(P)-binding J163_00412 PF09349 OHCU decarboxylase J163_00412 PF01014 Uricase J163_00415 PF00266 Aminotransferase class-V J163_00416 PF01546 Peptidase family M20/M25/M40 J163_00416 PF07687 Peptidase dimerisation domain J163_00417 PF03466 LysR substrate binding domain J163_00417 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_00418 PF07690 Major Facilitator Superfamily J163_00421 PF01425 Amidase J163_00422 PF01156 Inosine-uridine preferring nucleoside hydrolase J163_00424 PF00860 Permease family J163_00425 PF00111 2Fe-2S iron-sulfur cluster binding domain J163_00426 PF00355 Rieske [2Fe-2S] domain J163_00427 PF03466 LysR substrate binding domain J163_00427 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_00428 PF01026 TatD related DNase J163_00431 PF03466 LysR substrate binding domain J163_00431 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_00432 PF07690 Major Facilitator Superfamily J163_00435 PF02146 Sir2 family J163_00436 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J163_00437 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J163_00437 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J163_00439 PF00551 Formyl transferase J163_00440 PF00072 Response regulator receiver domain J163_00440 PF00486 Transcriptional regulatory protein, C terminal J163_00441 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_00441 PF00672 HAMP domain J163_00441 PF00512 His Kinase A (phospho-acceptor) domain J163_00442 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J163_00442 PF00529 HlyD membrane-fusion protein of T1SS J163_00443 PF00873 AcrB/AcrD/AcrF family J163_00444 PF02321 Outer membrane efflux protein J163_00446 PF02219 Methylenetetrahydrofolate reductase J163_00447 PF02677 Epoxyqueuosine reductase QueH J163_00448 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_00448 PF03466 LysR substrate binding domain J163_00449 PF03358 NADPH-dependent FMN reductase J163_00451 PF08267 Cobalamin-independent synthase, N-terminal domain J163_00451 PF01717 Cobalamin-independent synthase, Catalytic domain J163_00452 PF03812 2-keto-3-deoxygluconate permease J163_00454 PF05368 NmrA-like family J163_00455 PF01638 HxlR-like helix-turn-helix J163_00459 PF13333 Integrase core domain J163_00459 PF00665 Integrase core domain J163_00459 PF13276 HTH-like domain J163_00460 PF01527 Transposase J163_00461 PF13495 Phage integrase, N-terminal SAM-like domain J163_00461 PF00589 Phage integrase family J163_00462 PF00920 Dehydratase family J163_00465 PF00132 Bacterial transferase hexapeptide (six repeats) J163_00466 PF07690 Major Facilitator Superfamily J163_00467 PF01966 HD domain J163_00467 PF11871 Domain of unknown function (DUF3391) J163_00471 PF00171 Aldehyde dehydrogenase family J163_00473 PF01494 FAD binding domain J163_00476 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J163_00476 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J163_00477 PF00230 Major intrinsic protein J163_00478 PF16901 C-terminal domain of alpha-glycerophosphate oxidase J163_00478 PF01266 FAD dependent oxidoreductase J163_00479 PF08220 DeoR-like helix-turn-helix domain J163_00479 PF00455 DeoR C terminal sensor domain J163_00481 PF00355 Rieske [2Fe-2S] domain J163_00482 PF01144 Coenzyme A transferase J163_00483 PF01144 Coenzyme A transferase J163_00484 PF02803 Thiolase, C-terminal domain J163_00484 PF00108 Thiolase, N-terminal domain J163_00485 PF00775 Dioxygenase J163_00485 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal J163_00487 PF10397 Adenylosuccinate lyase C-terminus J163_00487 PF00206 Lyase J163_00488 PF12146 Serine aminopeptidase, S33 J163_00489 PF02627 Carboxymuconolactone decarboxylase family J163_00491 PF01614 Bacterial transcriptional regulator J163_00491 PF09339 IclR helix-turn-helix domain J163_00493 PF07859 alpha/beta hydrolase fold J163_00494 PF10677 Protein of unknown function (DUF2490) J163_00495 PF01134 Glucose inhibited division protein A J163_00495 PF13932 GidA associated domain J163_00497 PF00291 Pyridoxal-phosphate dependent enzyme J163_00501 PF13649 Methyltransferase domain J163_00503 PF12697 Alpha/beta hydrolase family J163_00505 PF00155 Aminotransferase class I and II J163_00506 PF06968 Biotin and Thiamin Synthesis associated domain J163_00506 PF04055 Radical SAM superfamily J163_00508 PF01040 UbiA prenyltransferase family J163_00512 PF05819 NolX protein J163_00520 PF01313 Bacterial export proteins, family 3 J163_00521 PF00813 FliP family J163_00524 PF00771 FHIPEP family J163_00525 PF01312 FlhB HrpN YscU SpaS Family J163_00528 PF01514 Secretory protein of YscJ/FliF family J163_00531 PF18269 T3SS EscN ATPase C-terminal domain J163_00531 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J163_00531 PF02874 ATP synthase alpha/beta family, beta-barrel domain J163_00533 PF01311 Bacterial export proteins, family 1 J163_00536 PF01464 Transglycosylase SLT domain J163_00539 PF12794 Mechanosensitive ion channel inner membrane domain 1 J163_00539 PF00924 Mechanosensitive ion channel J163_00539 PF12795 Mechanosensitive ion channel porin domain J163_00540 PF00884 Sulfatase J163_00541 PF03109 ABC1 family J163_00542 PF05661 Protein of unknown function (DUF808) J163_00543 PF00072 Response regulator receiver domain J163_00543 PF00990 Diguanylate cyclase, GGDEF domain J163_00544 PF00534 Glycosyl transferases group 1 J163_00544 PF08323 Starch synthase catalytic domain J163_00545 PF02806 Alpha amylase, C-terminal all-beta domain J163_00545 PF00128 Alpha amylase, catalytic domain J163_00545 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J163_00546 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J163_00546 PF11941 Domain of unknown function (DUF3459) J163_00546 PF00128 Alpha amylase, catalytic domain J163_00547 PF02446 4-alpha-glucanotransferase J163_00548 PF00128 Alpha amylase, catalytic domain J163_00550 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J163_00550 PF00128 Alpha amylase, catalytic domain J163_00551 PF13460 NAD(P)H-binding J163_00554 PF06903 VirK protein J163_00555 PF02321 Outer membrane efflux protein J163_00558 PF00873 AcrB/AcrD/AcrF family J163_00561 PF00271 Helicase conserved C-terminal domain J163_00561 PF00270 DEAD/DEAH box helicase J163_00563 PF02817 e3 binding domain J163_00563 PF00364 Biotin-requiring enzyme J163_00563 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J163_00565 PF02780 Transketolase, C-terminal domain J163_00565 PF02779 Transketolase, pyrimidine binding domain J163_00566 PF00676 Dehydrogenase E1 component J163_00568 PF03301 Tryptophan 2,3-dioxygenase J163_00569 PF00854 POT family J163_00571 PF01047 MarR family J163_00572 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J163_00573 PF04209 homogentisate 1,2-dioxygenase J163_00576 PF03334 Na+/H+ antiporter subunit J163_00577 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) J163_00579 PF00361 Proton-conducting membrane transporter J163_00580 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J163_00581 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J163_00581 PF00361 Proton-conducting membrane transporter J163_00581 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J163_00581 PF13244 Domain of unknown function (DUF4040) J163_00584 PF01483 Proprotein convertase P-domain J163_00584 PF01447 Thermolysin metallopeptidase, catalytic domain J163_00584 PF02868 Thermolysin metallopeptidase, alpha-helical domain J163_00584 PF07504 Fungalysin/Thermolysin Propeptide Motif J163_00585 PF00182 Chitinase class I J163_00589 PF01259 SAICAR synthetase J163_00590 PF05099 Tellurite resistance protein TerB J163_00590 PF00226 DnaJ domain J163_00592 PF00834 Ribulose-phosphate 3 epimerase family J163_00593 PF00583 Acetyltransferase (GNAT) family J163_00594 PF00781 Diacylglycerol kinase catalytic domain J163_00595 PF00425 chorismate binding enzyme J163_00595 PF04715 Anthranilate synthase component I, N terminal region J163_00597 PF00117 Glutamine amidotransferase class-I J163_00599 PF02885 Glycosyl transferase family, helical bundle domain J163_00599 PF00591 Glycosyl transferase family, a/b domain J163_00600 PF00218 Indole-3-glycerol phosphate synthase J163_00602 PF00325 Bacterial regulatory proteins, crp family J163_00602 PF00027 Cyclic nucleotide-binding domain J163_00603 PF02675 S-adenosylmethionine decarboxylase J163_00604 PF00893 Small Multidrug Resistance protein J163_00605 PF03232 Ubiquinone biosynthesis protein COQ7 J163_00606 PF00572 Ribosomal protein L13 J163_00607 PF00380 Ribosomal protein S9/S16 J163_00610 PF00293 NUDIX domain J163_00611 PF00210 Ferritin-like domain J163_00612 PF00672 HAMP domain J163_00612 PF00072 Response regulator receiver domain J163_00612 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_00612 PF00512 His Kinase A (phospho-acceptor) domain J163_00612 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J163_00612 PF01627 Hpt domain J163_00613 PF00072 Response regulator receiver domain J163_00613 PF00486 Transcriptional regulatory protein, C terminal J163_00617 PF01521 Iron-sulphur cluster biosynthesis J163_00620 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain J163_00620 PF09297 NADH pyrophosphatase zinc ribbon domain J163_00620 PF00293 NUDIX domain J163_00621 PF17113 Regulatory signalling modulator protein AmpE J163_00621 PF03186 CobD/Cbib protein J163_00624 PF07690 Major Facilitator Superfamily J163_00625 PF03466 LysR substrate binding domain J163_00625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_00626 PF07690 Major Facilitator Superfamily J163_00627 PF12805 FUSC-like inner membrane protein yccS J163_00628 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J163_00628 PF02843 Phosphoribosylglycinamide synthetase, C domain J163_00628 PF02844 Phosphoribosylglycinamide synthetase, N domain J163_00630 PF01808 AICARFT/IMPCHase bienzyme J163_00630 PF02142 MGS-like domain J163_00631 PF01066 CDP-alcohol phosphatidyltransferase J163_00632 PF12147 Putative methyltransferase J163_00632 PF12146 Serine aminopeptidase, S33 J163_00633 PF00782 Dual specificity phosphatase, catalytic domain J163_00639 PF02954 Bacterial regulatory protein, Fis family J163_00642 PF01381 Helix-turn-helix J163_00647 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J163_00647 PF02785 Biotin carboxylase C-terminal domain J163_00647 PF00289 Biotin carboxylase, N-terminal domain J163_00649 PF00364 Biotin-requiring enzyme J163_00650 PF01220 Dehydroquinase class II J163_00651 PF11412 Disulphide bond corrector protein DsbC J163_00651 PF02683 Cytochrome C biogenesis protein transmembrane region J163_00652 PF03091 CutA1 divalent ion tolerance protein J163_00655 PF01852 START domain J163_00657 PF00106 short chain dehydrogenase J163_00658 PF04231 Endonuclease I J163_00659 PF00166 Chaperonin 10 Kd subunit J163_00660 PF00118 TCP-1/cpn60 chaperonin family J163_00662 PF07715 TonB-dependent Receptor Plug Domain J163_00662 PF00593 TonB dependent receptor J163_00663 PF00793 DAHP synthetase I family J163_00666 PF08450 SMP-30/Gluconolactonase/LRE-like region J163_00668 PF08335 GlnD PII-uridylyltransferase J163_00668 PF03710 Glutamate-ammonia ligase adenylyltransferase J163_00669 PF02592 Putative vitamin uptake transporter J163_00672 PF00881 Nitroreductase family J163_00673 PF04264 YceI-like domain J163_00677 PF16957 Malonate decarboxylase, alpha subunit, transporter J163_00678 PF06857 Malonate decarboxylase delta subunit (MdcD) J163_00679 PF01039 Carboxyl transferase domain J163_00681 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG J163_00682 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase J163_00684 PF00698 Acyl transferase domain J163_00686 PF07729 FCD domain J163_00686 PF00392 Bacterial regulatory proteins, gntR family J163_00687 PF13419 Haloacid dehalogenase-like hydrolase J163_00693 PF07745 Glycosyl hydrolase family 53 J163_00694 PF00456 Transketolase, thiamine diphosphate binding domain J163_00694 PF17831 Pyruvate dehydrogenase E1 component middle domain J163_00695 PF13333 Integrase core domain J163_00695 PF00665 Integrase core domain J163_00695 PF13276 HTH-like domain J163_00696 PF01527 Transposase J163_00697 PF00106 short chain dehydrogenase J163_00700 PF00106 short chain dehydrogenase J163_00702 PF13409 Glutathione S-transferase, N-terminal domain J163_00707 PF12823 Domain of unknown function (DUF3817) J163_00707 PF03176 MMPL family J163_00708 PF00326 Prolyl oligopeptidase family J163_00708 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J163_00709 PF07759 Protein of unknown function (DUF1615) J163_00710 PF05230 MASE2 domain J163_00710 PF00990 Diguanylate cyclase, GGDEF domain J163_00714 PF00892 EamA-like transporter family J163_00715 PF00497 Bacterial extracellular solute-binding proteins, family 3 J163_00718 PF00324 Amino acid permease J163_00720 PF01544 CorA-like Mg2+ transporter protein J163_00722 PF01204 Trehalase J163_00724 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J163_00724 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J163_00729 PF00563 EAL domain J163_00729 PF00990 Diguanylate cyclase, GGDEF domain J163_00729 PF08447 PAS fold J163_00729 PF08448 PAS fold J163_00730 PF02203 Tar ligand binding domain homologue J163_00730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_00730 PF00672 HAMP domain J163_00731 PF00553 Cellulose binding domain J163_00731 PF00150 Cellulase (glycosyl hydrolase family 5) J163_00732 PF00916 Sulfate permease family J163_00732 PF01740 STAS domain J163_00733 PF08448 PAS fold J163_00733 PF00990 Diguanylate cyclase, GGDEF domain J163_00736 PF13632 Glycosyl transferase family group 2 J163_00738 PF06580 Histidine kinase J163_00738 PF07694 5TMR of 5TMR-LYT J163_00739 PF04397 LytTr DNA-binding domain J163_00739 PF00072 Response regulator receiver domain J163_00740 PF03900 Porphobilinogen deaminase, C-terminal domain J163_00740 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J163_00745 PF00326 Prolyl oligopeptidase family J163_00745 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J163_00747 PF00155 Aminotransferase class I and II J163_00748 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J163_00748 PF00326 Prolyl oligopeptidase family J163_00749 PF04304 Protein of unknown function (DUF454) J163_00751 PF01678 Diaminopimelate epimerase J163_00753 PF00589 Phage integrase family J163_00753 PF02899 Phage integrase, N-terminal SAM-like domain J163_00754 PF00227 Proteasome subunit J163_00755 PF00004 ATPase family associated with various cellular activities (AAA) J163_00755 PF07724 AAA domain (Cdc48 subfamily) J163_00755 PF10431 C-terminal, D2-small domain, of ClpB protein J163_00757 PF13673 Acetyltransferase (GNAT) domain J163_00758 PF13533 Biotin-lipoyl like J163_00760 PF01209 ubiE/COQ5 methyltransferase family J163_00761 PF00563 EAL domain J163_00761 PF00990 Diguanylate cyclase, GGDEF domain J163_00761 PF03707 Bacterial signalling protein N terminal repeat J163_00762 PF01433 Peptidase family M1 domain J163_00762 PF11838 ERAP1-like C-terminal domain J163_00765 PF13360 PQQ-like domain J163_00766 PF00497 Bacterial extracellular solute-binding proteins, family 3 J163_00769 PF08240 Alcohol dehydrogenase GroES-like domain J163_00769 PF00107 Zinc-binding dehydrogenase J163_00771 PF00158 Sigma-54 interaction domain J163_00771 PF01590 GAF domain J163_00771 PF02954 Bacterial regulatory protein, Fis family J163_00772 PF00294 pfkB family carbohydrate kinase J163_00774 PF04085 rod shape-determining protein MreC J163_00776 PF03717 Penicillin-binding Protein dimerisation domain J163_00776 PF00905 Penicillin binding protein transpeptidase domain J163_00777 PF01098 Cell cycle protein J163_00778 PF00295 Glycosyl hydrolases family 28 J163_00779 PF13406 Transglycosylase SLT domain J163_00780 PF05036 Sporulation related domain J163_00780 PF03330 Lytic transglycolase J163_00781 PF07943 Penicillin-binding protein 5, C-terminal domain J163_00781 PF00768 D-alanyl-D-alanine carboxypeptidase J163_00783 PF04359 Protein of unknown function (DUF493) J163_00784 PF03099 Biotin/lipoate A/B protein ligase family J163_00785 PF04055 Radical SAM superfamily J163_00785 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family J163_00786 PF03572 Peptidase family S41 J163_00786 PF11818 C-terminal domain of tail specific protease (DUF3340) J163_00786 PF17804 Tail specific protease N-terminal domain J163_00786 PF00595 PDZ domain J163_00788 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_00788 PF03466 LysR substrate binding domain J163_00790 PF01467 Cytidylyltransferase-like J163_00790 PF00293 NUDIX domain J163_00797 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J163_00797 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J163_00798 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J163_00798 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J163_00799 PF04972 BON domain J163_00800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_00800 PF00512 His Kinase A (phospho-acceptor) domain J163_00800 PF01590 GAF domain J163_00800 PF08446 PAS fold J163_00800 PF00360 Phytochrome region J163_00801 PF00072 Response regulator receiver domain J163_00802 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_00802 PF00512 His Kinase A (phospho-acceptor) domain J163_00803 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J163_00812 PF00263 Bacterial type II and III secretion system protein J163_00812 PF03958 Bacterial type II/III secretion system short domain J163_00813 PF00437 Type II/IV secretion system protein J163_00814 PF00482 Type II secretion system (T2SS), protein F J163_00815 PF08334 Type II secretion system (T2SS), protein G J163_00815 PF07963 Prokaryotic N-terminal methylation motif J163_00816 PF07963 Prokaryotic N-terminal methylation motif J163_00816 PF12019 Type II transport protein GspH J163_00818 PF11612 Type II secretion system (T2SS), protein J J163_00818 PF07963 Prokaryotic N-terminal methylation motif J163_00819 PF03934 Type II secretion system (T2SS), protein K J163_00825 PF16355 Domain of unknown function (DUF4982) J163_00825 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J163_00825 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J163_00825 PF02837 Glycosyl hydrolases family 2, sugar binding domain J163_00825 PF00703 Glycosyl hydrolases family 2 J163_00830 PF07690 Major Facilitator Superfamily J163_00831 PF00356 Bacterial regulatory proteins, lacI family J163_00832 PF01380 SIS domain J163_00833 PF01979 Amidohydrolase family J163_00835 PF01743 Poly A polymerase head domain J163_00835 PF01966 HD domain J163_00835 PF12627 Probable RNA and SrmB- binding site of polymerase A J163_00836 PF00732 GMC oxidoreductase J163_00836 PF05199 GMC oxidoreductase J163_00837 PF00171 Aldehyde dehydrogenase family J163_00838 PF02028 BCCT, betaine/carnitine/choline family transporter J163_00840 PF01323 DSBA-like thioredoxin domain J163_00843 PF00034 Cytochrome c J163_00844 PF01926 50S ribosome-binding GTPase J163_00845 PF10996 Beta-Casp domain J163_00845 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain J163_00845 PF00753 Metallo-beta-lactamase superfamily J163_00847 PF04107 Glutamate-cysteine ligase family 2(GCS2) J163_00848 PF00512 His Kinase A (phospho-acceptor) domain J163_00848 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_00848 PF00672 HAMP domain J163_00849 PF00072 Response regulator receiver domain J163_00849 PF00486 Transcriptional regulatory protein, C terminal J163_00852 PF02583 Metal-sensitive transcriptional repressor J163_00853 PF00107 Zinc-binding dehydrogenase J163_00853 PF08240 Alcohol dehydrogenase GroES-like domain J163_00854 PF04828 Glutathione-dependent formaldehyde-activating enzyme J163_00855 PF00756 Putative esterase J163_00856 PF00392 Bacterial regulatory proteins, gntR family J163_00856 PF00155 Aminotransferase class I and II J163_00857 PF02567 Phenazine biosynthesis-like protein J163_00858 PF00892 EamA-like transporter family J163_00860 PF12848 ABC transporter J163_00860 PF00005 ABC transporter J163_00862 PF00464 Serine hydroxymethyltransferase J163_00863 PF03477 ATP cone domain J163_00865 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J163_00865 PF01872 RibD C-terminal domain J163_00868 PF00677 Lumazine binding domain J163_00869 PF00925 GTP cyclohydrolase II J163_00869 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J163_00870 PF00885 6,7-dimethyl-8-ribityllumazine synthase J163_00871 PF01029 NusB family J163_00872 PF00586 AIR synthase related protein, N-terminal domain J163_00872 PF02769 AIR synthase related protein, C-terminal domain J163_00876 PF03814 Potassium-transporting ATPase A subunit J163_00878 PF02669 K+-transporting ATPase, c chain J163_00879 PF13493 Domain of unknown function (DUF4118) J163_00879 PF02702 Osmosensitive K+ channel His kinase sensor domain J163_00879 PF13492 GAF domain J163_00879 PF00512 His Kinase A (phospho-acceptor) domain J163_00879 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_00880 PF00072 Response regulator receiver domain J163_00880 PF00486 Transcriptional regulatory protein, C terminal J163_00883 PF01565 FAD binding domain J163_00883 PF02913 FAD linked oxidases, C-terminal domain J163_00884 PF04307 LexA-binding, inner membrane-associated putative hydrolase J163_00885 PF02021 Uncharacterised protein family UPF0102 J163_00887 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J163_00892 PF02381 MraZ protein, putative antitoxin-like J163_00893 PF01795 MraW methylase family J163_00894 PF04999 Cell division protein FtsL J163_00895 PF00905 Penicillin binding protein transpeptidase domain J163_00895 PF03717 Penicillin-binding Protein dimerisation domain J163_00896 PF01225 Mur ligase family, catalytic domain J163_00896 PF02875 Mur ligase family, glutamate ligase domain J163_00896 PF08245 Mur ligase middle domain J163_00897 PF08245 Mur ligase middle domain J163_00897 PF02875 Mur ligase family, glutamate ligase domain J163_00897 PF01225 Mur ligase family, catalytic domain J163_00898 PF00953 Glycosyl transferase family 4 J163_00899 PF01098 Cell cycle protein J163_00900 PF04101 Glycosyltransferase family 28 C-terminal domain J163_00900 PF03033 Glycosyltransferase family 28 N-terminal domain J163_00901 PF02875 Mur ligase family, glutamate ligase domain J163_00901 PF01225 Mur ligase family, catalytic domain J163_00901 PF08245 Mur ligase middle domain J163_00902 PF07478 D-ala D-ala ligase C-terminus J163_00902 PF01820 D-ala D-ala ligase N-terminus J163_00903 PF03799 Cell division protein FtsQ J163_00903 PF08478 POTRA domain, FtsQ-type J163_00904 PF02491 SHS2 domain inserted in FTSA J163_00905 PF00091 Tubulin/FtsZ family, GTPase domain J163_00905 PF12327 FtsZ family, C-terminal domain J163_00906 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase J163_00908 PF01551 Peptidase family M23 J163_00908 PF08525 Opacity-associated protein A N-terminal motif J163_00908 PF01476 LysM domain J163_00909 PF07517 SecA DEAD-like domain J163_00909 PF02810 SEC-C motif J163_00909 PF07516 SecA Wing and Scaffold domain J163_00909 PF01043 SecA preprotein cross-linking domain J163_00910 PF00293 NUDIX domain J163_00912 PF02219 Methylenetetrahydrofolate reductase J163_00915 PF00698 Acyl transferase domain J163_00915 PF02801 Beta-ketoacyl synthase, C-terminal domain J163_00915 PF08659 KR domain J163_00915 PF00109 Beta-ketoacyl synthase, N-terminal domain J163_00915 PF16197 Ketoacyl-synthetase C-terminal extension J163_00915 PF00550 Phosphopantetheine attachment site J163_00915 PF08240 Alcohol dehydrogenase GroES-like domain J163_00915 PF00107 Zinc-binding dehydrogenase J163_00915 PF14765 Polyketide synthase dehydratase J163_00916 PF00082 Subtilase family J163_00916 PF09286 Pro-kumamolisin, activation domain J163_00918 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J163_00919 PF00128 Alpha amylase, catalytic domain J163_00925 PF13649 Methyltransferase domain J163_00926 PF05221 S-adenosyl-L-homocysteine hydrolase J163_00926 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain J163_00929 PF00311 Phosphoenolpyruvate carboxylase J163_00934 PF00328 Histidine phosphatase superfamily (branch 2) J163_00935 PF02773 S-adenosylmethionine synthetase, C-terminal domain J163_00935 PF00438 S-adenosylmethionine synthetase, N-terminal domain J163_00935 PF02772 S-adenosylmethionine synthetase, central domain J163_00937 PF13649 Methyltransferase domain J163_00938 PF01207 Dihydrouridine synthase (Dus) J163_00941 PF00294 pfkB family carbohydrate kinase J163_00942 PF01773 Na+ dependent nucleoside transporter N-terminus J163_00942 PF07670 Nucleoside recognition J163_00942 PF07662 Na+ dependent nucleoside transporter C-terminus J163_00943 PF00248 Aldo/keto reductase family J163_00945 PF00593 TonB dependent receptor J163_00945 PF07715 TonB-dependent Receptor Plug Domain J163_00950 PF00528 Binding-protein-dependent transport system inner membrane component J163_00951 PF00005 ABC transporter J163_00953 PF02668 Taurine catabolism dioxygenase TauD, TfdA family J163_00955 PF00005 ABC transporter J163_00956 PF13472 GDSL-like Lipase/Acylhydrolase family J163_00957 PF00486 Transcriptional regulatory protein, C terminal J163_00957 PF00072 Response regulator receiver domain J163_00958 PF08521 Two-component sensor kinase N-terminal J163_00958 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_00958 PF00512 His Kinase A (phospho-acceptor) domain J163_00960 PF01219 Prokaryotic diacylglycerol kinase J163_00964 PF01790 Prolipoprotein diacylglyceryl transferase J163_00965 PF00303 Thymidylate synthase J163_00967 PF00186 Dihydrofolate reductase J163_00968 PF00158 Sigma-54 interaction domain J163_00969 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J163_00969 PF08028 Acyl-CoA dehydrogenase, C-terminal domain J163_00970 PF00005 ABC transporter J163_00971 PF00528 Binding-protein-dependent transport system inner membrane component J163_00973 PF00296 Luciferase-like monooxygenase J163_00974 PF03358 NADPH-dependent FMN reductase J163_00978 PF00296 Luciferase-like monooxygenase J163_00979 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J163_00980 PF00528 Binding-protein-dependent transport system inner membrane component J163_00983 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J163_00983 PF00005 ABC transporter J163_00984 PF00149 Calcineurin-like phosphoesterase J163_00985 PF04379 ApaG domain J163_00986 PF00398 Ribosomal RNA adenine dimethylase J163_00987 PF04166 Pyridoxal phosphate biosynthetic protein PdxA J163_00988 PF09312 SurA N-terminal domain J163_00988 PF00639 PPIC-type PPIASE domain J163_00989 PF03968 OstA-like protein J163_00989 PF04453 LPS transport system D J163_00992 PF00850 Histone deacetylase domain J163_00993 PF01923 Cobalamin adenosyltransferase J163_00995 PF01494 FAD binding domain J163_00996 PF01494 FAD binding domain J163_01000 PF07729 FCD domain J163_01000 PF00392 Bacterial regulatory proteins, gntR family J163_01001 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J163_01002 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit J163_01002 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J163_01003 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_01003 PF03466 LysR substrate binding domain J163_01004 PF13193 AMP-binding enzyme C-terminal domain J163_01004 PF00501 AMP-binding enzyme J163_01005 PF00171 Aldehyde dehydrogenase family J163_01006 PF00378 Enoyl-CoA hydratase/isomerase J163_01010 PF08450 SMP-30/Gluconolactonase/LRE-like region J163_01011 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J163_01011 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J163_01012 PF18125 RlmM ferredoxin-like domain J163_01012 PF01728 FtsJ-like methyltransferase J163_01015 PF00892 EamA-like transporter family J163_01016 PF00749 tRNA synthetases class I (E and Q), catalytic domain J163_01016 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J163_01019 PF00072 Response regulator receiver domain J163_01019 PF00990 Diguanylate cyclase, GGDEF domain J163_01020 PF01627 Hpt domain J163_01020 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J163_01020 PF00072 Response regulator receiver domain J163_01020 PF00512 His Kinase A (phospho-acceptor) domain J163_01020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_01020 PF00672 HAMP domain J163_01021 PF00072 Response regulator receiver domain J163_01021 PF00196 Bacterial regulatory proteins, luxR family J163_01023 PF01625 Peptide methionine sulfoxide reductase J163_01025 PF00923 Transaldolase/Fructose-6-phosphate aldolase J163_01026 PF01272 Transcription elongation factor, GreA/GreB, C-term J163_01026 PF14760 Rnk N-terminus J163_01027 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_01027 PF03466 LysR substrate binding domain J163_01028 PF13192 Thioredoxin domain J163_01028 PF07992 Pyridine nucleotide-disulphide oxidoreductase J163_01029 PF10417 C-terminal domain of 1-Cys peroxiredoxin J163_01029 PF00578 AhpC/TSA family J163_01030 PF05175 Methyltransferase small domain J163_01030 PF17827 PrmC N-terminal domain J163_01031 PF00561 alpha/beta hydrolase fold J163_01033 PF00293 NUDIX domain J163_01034 PF01612 3'-5' exonuclease J163_01034 PF00476 DNA polymerase family A J163_01034 PF01367 5'-3' exonuclease, C-terminal SAM fold J163_01034 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J163_01040 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J163_01040 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J163_01040 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J163_01045 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J163_01046 PF02233 NAD(P) transhydrogenase beta subunit J163_01049 PF01063 Amino-transferase class IV J163_01050 PF04151 Bacterial pre-peptidase C-terminal domain J163_01050 PF00082 Subtilase family J163_01051 PF04151 Bacterial pre-peptidase C-terminal domain J163_01051 PF00082 Subtilase family J163_01052 PF04151 Bacterial pre-peptidase C-terminal domain J163_01052 PF00082 Subtilase family J163_01053 PF04073 Aminoacyl-tRNA editing domain J163_01055 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain J163_01055 PF17189 Glycosyl hydrolase family 30 beta sandwich domain J163_01056 PF17189 Glycosyl hydrolase family 30 beta sandwich domain J163_01056 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain J163_01058 PF03358 NADPH-dependent FMN reductase J163_01059 PF03631 Virulence factor BrkB J163_01060 PF08534 Redoxin J163_01061 PF00708 Acylphosphatase J163_01063 PF03976 Polyphosphate kinase 2 (PPK2) J163_01064 PF00994 Probable molybdopterin binding domain J163_01066 PF00472 RF-1 domain J163_01066 PF03462 PCRF domain J163_01067 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J163_01067 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J163_01067 PF01488 Shikimate / quinate 5-dehydrogenase J163_01069 PF03550 Outer membrane lipoprotein LolB J163_01070 PF08544 GHMP kinases C terminal J163_01070 PF00288 GHMP kinases N terminal domain J163_01072 PF14572 Phosphoribosyl synthetase-associated domain J163_01072 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J163_01073 PF01386 Ribosomal L25p family J163_01073 PF14693 Ribosomal protein TL5, C-terminal domain J163_01074 PF01195 Peptidyl-tRNA hydrolase J163_01075 PF01926 50S ribosome-binding GTPase J163_01075 PF06071 Protein of unknown function (DUF933) J163_01079 PF00009 Elongation factor Tu GTP binding domain J163_01079 PF03144 Elongation factor Tu domain 2 J163_01079 PF03143 Elongation factor Tu C-terminal domain J163_01081 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J163_01082 PF00467 KOW motif J163_01082 PF02357 Transcription termination factor nusG J163_01083 PF03946 Ribosomal protein L11, N-terminal domain J163_01083 PF00298 Ribosomal protein L11, RNA binding domain J163_01084 PF00687 Ribosomal protein L1p/L10e family J163_01085 PF00466 Ribosomal protein L10 J163_01086 PF00542 Ribosomal protein L7/L12 C-terminal domain J163_01086 PF16320 Ribosomal protein L7/L12 dimerisation domain J163_01088 PF04561 RNA polymerase Rpb2, domain 2 J163_01088 PF04560 RNA polymerase Rpb2, domain 7 J163_01088 PF00562 RNA polymerase Rpb2, domain 6 J163_01088 PF10385 RNA polymerase beta subunit external 1 domain J163_01088 PF04563 RNA polymerase beta subunit J163_01088 PF04565 RNA polymerase Rpb2, domain 3 J163_01089 PF04998 RNA polymerase Rpb1, domain 5 J163_01089 PF05000 RNA polymerase Rpb1, domain 4 J163_01089 PF04983 RNA polymerase Rpb1, domain 3 J163_01089 PF04997 RNA polymerase Rpb1, domain 1 J163_01089 PF00623 RNA polymerase Rpb1, domain 2 J163_01090 PF00164 Ribosomal protein S12/S23 J163_01091 PF00177 Ribosomal protein S7p/S5e J163_01092 PF03764 Elongation factor G, domain IV J163_01092 PF00679 Elongation factor G C-terminus J163_01092 PF14492 Elongation Factor G, domain II J163_01092 PF03144 Elongation factor Tu domain 2 J163_01092 PF00009 Elongation factor Tu GTP binding domain J163_01093 PF00009 Elongation factor Tu GTP binding domain J163_01093 PF03143 Elongation factor Tu C-terminal domain J163_01093 PF03144 Elongation factor Tu domain 2 J163_01094 PF00338 Ribosomal protein S10p/S20e J163_01095 PF00297 Ribosomal protein L3 J163_01096 PF00573 Ribosomal protein L4/L1 family J163_01097 PF00276 Ribosomal protein L23 J163_01098 PF00181 Ribosomal Proteins L2, RNA binding domain J163_01098 PF03947 Ribosomal Proteins L2, C-terminal domain J163_01099 PF00203 Ribosomal protein S19 J163_01100 PF00237 Ribosomal protein L22p/L17e J163_01101 PF07650 KH domain J163_01101 PF00189 Ribosomal protein S3, C-terminal domain J163_01102 PF00252 Ribosomal protein L16p/L10e J163_01103 PF00831 Ribosomal L29 protein J163_01104 PF00366 Ribosomal protein S17 J163_01105 PF00238 Ribosomal protein L14p/L23e J163_01106 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J163_01106 PF00467 KOW motif J163_01107 PF00281 Ribosomal protein L5 J163_01107 PF00673 ribosomal L5P family C-terminus J163_01108 PF00253 Ribosomal protein S14p/S29e J163_01109 PF00410 Ribosomal protein S8 J163_01110 PF00347 Ribosomal protein L6 J163_01111 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J163_01112 PF03719 Ribosomal protein S5, C-terminal domain J163_01112 PF00333 Ribosomal protein S5, N-terminal domain J163_01113 PF00327 Ribosomal protein L30p/L7e J163_01114 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J163_01115 PF00344 SecY translocase J163_01116 PF00416 Ribosomal protein S13/S18 J163_01117 PF00411 Ribosomal protein S11 J163_01118 PF01479 S4 domain J163_01118 PF00163 Ribosomal protein S4/S9 N-terminal domain J163_01119 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J163_01119 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J163_01119 PF01000 RNA polymerase Rpb3/RpoA insert domain J163_01120 PF01196 Ribosomal protein L17 J163_01121 PF02600 Disulfide bond formation protein DsbB J163_01123 PF01474 Class-II DAHP synthetase family J163_01125 PF01425 Amidase J163_01128 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J163_01129 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J163_01129 PF00056 lactate/malate dehydrogenase, NAD binding domain J163_01130 PF00043 Glutathione S-transferase, C-terminal domain J163_01130 PF02798 Glutathione S-transferase, N-terminal domain J163_01132 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J163_01132 PF07992 Pyridine nucleotide-disulphide oxidoreductase J163_01133 PF00107 Zinc-binding dehydrogenase J163_01133 PF08240 Alcohol dehydrogenase GroES-like domain J163_01134 PF00691 OmpA family J163_01134 PF05736 OprF membrane domain J163_01136 PF00849 RNA pseudouridylate synthase J163_01138 PF00155 Aminotransferase class I and II J163_01140 PF00528 Binding-protein-dependent transport system inner membrane component J163_01141 PF00528 Binding-protein-dependent transport system inner membrane component J163_01142 PF00005 ABC transporter J163_01142 PF12857 TOBE-like domain J163_01142 PF17850 CysA C-terminal regulatory domain J163_01144 PF00107 Zinc-binding dehydrogenase J163_01144 PF08240 Alcohol dehydrogenase GroES-like domain J163_01146 PF04185 Phosphoesterase family J163_01146 PF05506 Domain of unknown function (DUF756) J163_01147 PF10459 Peptidase S46 J163_01148 PF10459 Peptidase S46 J163_01149 PF00300 Histidine phosphatase superfamily (branch 1) J163_01150 PF02875 Mur ligase family, glutamate ligase domain J163_01150 PF08245 Mur ligase middle domain J163_01153 PF00156 Phosphoribosyl transferase domain J163_01154 PF04305 Protein of unknown function (DUF455) J163_01158 PF00149 Calcineurin-like phosphoesterase J163_01160 PF01569 PAP2 superfamily J163_01161 PF00534 Glycosyl transferases group 1 J163_01161 PF13439 Glycosyltransferase Family 4 J163_01162 PF02541 Ppx/GppA phosphatase family J163_01163 PF17941 Polyphosphate kinase C-terminal domain 1 J163_01163 PF02503 Polyphosphate kinase middle domain J163_01163 PF13090 Polyphosphate kinase C-terminal domain 2 J163_01163 PF13089 Polyphosphate kinase N-terminal domain J163_01164 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_01164 PF00989 PAS fold J163_01164 PF11808 Phosphate regulon sensor protein PhoR J163_01164 PF00512 His Kinase A (phospho-acceptor) domain J163_01165 PF00072 Response regulator receiver domain J163_01165 PF00486 Transcriptional regulatory protein, C terminal J163_01166 PF13181 Tetratricopeptide repeat J163_01166 PF01435 Peptidase family M48 J163_01167 PF00462 Glutaredoxin J163_01169 PF00180 Isocitrate/isopropylmalate dehydrogenase J163_01175 PF13333 Integrase core domain J163_01175 PF00665 Integrase core domain J163_01175 PF13276 HTH-like domain J163_01176 PF01527 Transposase J163_01199 PF01527 Transposase J163_01200 PF13333 Integrase core domain J163_01200 PF00665 Integrase core domain J163_01200 PF13276 HTH-like domain J163_01203 PF00989 PAS fold J163_01203 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_01203 PF00512 His Kinase A (phospho-acceptor) domain J163_01206 PF05697 Bacterial trigger factor protein (TF) J163_01206 PF05698 Bacterial trigger factor protein (TF) C-terminus J163_01207 PF00574 Clp protease J163_01208 PF06689 ClpX C4-type zinc finger J163_01208 PF10431 C-terminal, D2-small domain, of ClpB protein J163_01208 PF07724 AAA domain (Cdc48 subfamily) J163_01209 PF02190 ATP-dependent protease La (LON) substrate-binding domain J163_01209 PF05362 Lon protease (S16) C-terminal proteolytic domain J163_01209 PF00004 ATPase family associated with various cellular activities (AAA) J163_01210 PF00216 Bacterial DNA-binding protein J163_01216 PF05257 CHAP domain J163_01216 PF01476 LysM domain J163_01217 PF00753 Metallo-beta-lactamase superfamily J163_01217 PF16123 Hydroxyacylglutathione hydrolase C-terminus J163_01219 PF00075 RNase H J163_01220 PF00929 Exonuclease J163_01224 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J163_01226 PF12706 Beta-lactamase superfamily domain J163_01226 PF00753 Metallo-beta-lactamase superfamily J163_01227 PF06463 Molybdenum Cofactor Synthesis C J163_01227 PF04055 Radical SAM superfamily J163_01228 PF01967 MoaC family J163_01229 PF02597 ThiS family J163_01230 PF02391 MoaE protein J163_01233 PF01527 Transposase J163_01234 PF13276 HTH-like domain J163_01234 PF13333 Integrase core domain J163_01234 PF00665 Integrase core domain J163_01240 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding J163_01240 PF12170 DNA polymerase III tau subunit V interacting with alpha J163_01240 PF12169 DNA polymerase III subunits gamma and tau domain III J163_01241 PF02575 YbaB/EbfC DNA-binding family J163_01242 PF13662 Toprim domain J163_01242 PF02132 RecR protein J163_01243 PF01230 HIT domain J163_01245 PF01841 Transglutaminase-like superfamily J163_01245 PF13559 Domain of unknown function (DUF4129) J163_01245 PF11992 Domain of unknown function (DUF3488) J163_01247 PF07726 ATPase family associated with various cellular activities (AAA) J163_01247 PF17863 AAA lid domain J163_01251 PF02545 Maf-like protein J163_01252 PF02620 Large ribosomal RNA subunit accumulation protein YceD J163_01253 PF01783 Ribosomal L32p protein family J163_01254 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J163_01254 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J163_01256 PF00698 Acyl transferase domain J163_01258 PF00550 Phosphopantetheine attachment site J163_01259 PF02801 Beta-ketoacyl synthase, C-terminal domain J163_01259 PF00109 Beta-ketoacyl synthase, N-terminal domain J163_01260 PF04715 Anthranilate synthase component I, N terminal region J163_01260 PF00425 chorismate binding enzyme J163_01261 PF02618 YceG-like family J163_01262 PF09115 DNA polymerase III, delta subunit, C terminal J163_01266 PF02954 Bacterial regulatory protein, Fis family J163_01266 PF06506 Propionate catabolism activator J163_01266 PF00158 Sigma-54 interaction domain J163_01268 PF00285 Citrate synthase, C-terminal domain J163_01269 PF00694 Aconitase C-terminal domain J163_01269 PF00330 Aconitase family (aconitate hydratase) J163_01270 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH J163_01272 PF04303 PrpF protein J163_01273 PF00593 TonB dependent receptor J163_01273 PF07715 TonB-dependent Receptor Plug Domain J163_01275 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain J163_01275 PF00207 Alpha-2-macroglobulin family J163_01275 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain J163_01275 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain J163_01275 PF17962 Bacterial macroglobulin domain 6 J163_01275 PF07703 Alpha-2-macroglobulin bait region domain J163_01275 PF11974 Bacterial alpha-2-macroglobulin MG3 domain J163_01275 PF01835 MG2 domain J163_01278 PF00912 Transglycosylase J163_01278 PF00905 Penicillin binding protein transpeptidase domain J163_01278 PF06832 Penicillin-Binding Protein C-terminus Family J163_01280 PF08534 Redoxin J163_01282 PF01556 DnaJ C terminal domain J163_01282 PF00226 DnaJ domain J163_01284 PF00072 Response regulator receiver domain J163_01286 PF01145 SPFH domain / Band 7 family J163_01286 PF12221 Bacterial membrane protein N terminal J163_01287 PF01145 SPFH domain / Band 7 family J163_01289 PF00709 Adenylosuccinate synthetase J163_01290 PF11838 ERAP1-like C-terminal domain J163_01290 PF01433 Peptidase family M1 domain J163_01293 PF00440 Bacterial regulatory proteins, tetR family J163_01306 PF00300 Histidine phosphatase superfamily (branch 1) J163_01306 PF13456 Reverse transcriptase-like J163_01307 PF01256 Carbohydrate kinase J163_01309 PF00723 Glycosyl hydrolases family 15 J163_01311 PF07971 Glycosyl hydrolase family 92 J163_01311 PF17678 Glycosyl hydrolase family 92 N-terminal domain J163_01315 PF07992 Pyridine nucleotide-disulphide oxidoreductase J163_01319 PF17755 UvrA DNA-binding domain J163_01320 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J163_01320 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J163_01321 PF03450 CO dehydrogenase flavoprotein C-terminal domain J163_01321 PF00941 FAD binding domain in molybdopterin dehydrogenase J163_01322 PF01799 [2Fe-2S] binding domain J163_01322 PF00111 2Fe-2S iron-sulfur cluster binding domain J163_01329 PF00717 Peptidase S24-like J163_01329 PF01726 LexA DNA binding domain J163_01332 PF02811 PHP domain J163_01332 PF07733 Bacterial DNA polymerase III alpha NTPase domain J163_01332 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J163_01332 PF14579 Helix-hairpin-helix motif J163_01333 PF00326 Prolyl oligopeptidase family J163_01335 PF03169 OPT oligopeptide transporter protein J163_01338 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J163_01338 PF07676 WD40-like Beta Propeller Repeat J163_01338 PF00326 Prolyl oligopeptidase family J163_01341 PF02311 AraC-like ligand binding domain J163_01341 PF12833 Helix-turn-helix domain J163_01346 PF00199 Catalase J163_01346 PF18011 C-terminal domain found in long catalases J163_01346 PF06628 Catalase-related immune-responsive J163_01347 PF00248 Aldo/keto reductase family J163_01348 PF00135 Carboxylesterase family J163_01349 PF02347 Glycine cleavage system P-protein J163_01352 PF07690 Major Facilitator Superfamily J163_01355 PF00884 Sulfatase J163_01355 PF08019 Phosphoethanolamine transferase EptA/EptB J163_01358 PF00486 Transcriptional regulatory protein, C terminal J163_01358 PF00072 Response regulator receiver domain J163_01359 PF08521 Two-component sensor kinase N-terminal J163_01359 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_01359 PF00512 His Kinase A (phospho-acceptor) domain J163_01361 PF03776 Septum formation topological specificity factor MinE J163_01362 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J163_01363 PF05209 Septum formation inhibitor MinC, N-terminal domain J163_01363 PF03775 Septum formation inhibitor MinC, C-terminal domain J163_01365 PF07730 Histidine kinase J163_01366 PF00196 Bacterial regulatory proteins, luxR family J163_01366 PF00072 Response regulator receiver domain J163_01369 PF00730 HhH-GPD superfamily base excision DNA repair protein J163_01374 PF02222 ATP-grasp domain J163_01376 PF04377 Arginine-tRNA-protein transferase, C terminus J163_01376 PF04376 Arginine-tRNA-protein transferase, N terminus J163_01382 PF00378 Enoyl-CoA hydratase/isomerase J163_01385 PF17760 UvrA interaction domain J163_01385 PF17755 UvrA DNA-binding domain J163_01385 PF00005 ABC transporter J163_01386 PF00829 Ribosomal prokaryotic L21 protein J163_01387 PF01016 Ribosomal L27 protein J163_01388 PF01018 GTP1/OBG J163_01388 PF01926 50S ribosome-binding GTPase J163_01389 PF01649 Ribosomal protein S20 J163_01390 PF03023 Lipid II flippase MurJ J163_01391 PF01687 Riboflavin kinase J163_01391 PF06574 FAD synthetase J163_01392 PF00133 tRNA synthetases class I (I, L, M and V) J163_01392 PF06827 Zinc finger found in FPG and IleRS J163_01392 PF08264 Anticodon-binding domain of tRNA J163_01393 PF01252 Signal peptidase (SPase) II J163_01394 PF02401 LytB protein J163_01396 PF06481 COX Aromatic Rich Motif J163_01396 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J163_01397 PF00115 Cytochrome C and Quinol oxidase polypeptide I J163_01398 PF00510 Cytochrome c oxidase subunit III J163_01399 PF03626 Prokaryotic Cytochrome C oxidase subunit IV J163_01401 PF18073 Rubredoxin metal binding domain J163_01402 PF05656 Protein of unknown function (DUF805) J163_01404 PF12833 Helix-turn-helix domain J163_01405 PF00183 Hsp90 protein J163_01405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_01407 PF01740 STAS domain J163_01407 PF08678 Rsbr N terminal J163_01408 PF01740 STAS domain J163_01409 PF13581 Histidine kinase-like ATPase domain J163_01411 PF00072 Response regulator receiver domain J163_01411 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_01411 PF00672 HAMP domain J163_01411 PF17149 Periplasmic sensor domain found in signal transduction proteins J163_01411 PF01627 Hpt domain J163_01411 PF00512 His Kinase A (phospho-acceptor) domain J163_01412 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_01412 PF08448 PAS fold J163_01412 PF13188 PAS domain J163_01412 PF00072 Response regulator receiver domain J163_01412 PF00512 His Kinase A (phospho-acceptor) domain J163_01413 PF04616 Glycosyl hydrolases family 43 J163_01413 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J163_01414 PF07715 TonB-dependent Receptor Plug Domain J163_01414 PF00593 TonB dependent receptor J163_01415 PF00085 Thioredoxin J163_01416 PF07237 Protein of unknown function (DUF1428) J163_01417 PF00512 His Kinase A (phospho-acceptor) domain J163_01417 PF02702 Osmosensitive K+ channel His kinase sensor domain J163_01417 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_01417 PF13493 Domain of unknown function (DUF4118) J163_01417 PF13492 GAF domain J163_01418 PF01339 CheB methylesterase J163_01419 PF03705 CheR methyltransferase, all-alpha domain J163_01419 PF01739 CheR methyltransferase, SAM binding domain J163_01420 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J163_01420 PF00672 HAMP domain J163_01420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_01420 PF00512 His Kinase A (phospho-acceptor) domain J163_01420 PF01627 Hpt domain J163_01420 PF00072 Response regulator receiver domain J163_01421 PF13426 PAS domain J163_01421 PF00072 Response regulator receiver domain J163_01421 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_01422 PF00072 Response regulator receiver domain J163_01423 PF00722 Glycosyl hydrolases family 16 J163_01424 PF06964 Alpha-L-arabinofuranosidase C-terminal domain J163_01425 PF01263 Aldose 1-epimerase J163_01426 PF01578 Cytochrome C assembly protein J163_01427 PF00448 SRP54-type protein, GTPase domain J163_01427 PF02881 SRP54-type protein, helical bundle domain J163_01427 PF02978 Signal peptide binding domain J163_01428 PF03060 Nitronate monooxygenase J163_01429 PF01063 Amino-transferase class IV J163_01430 PF00886 Ribosomal protein S16 J163_01431 PF05239 PRC-barrel domain J163_01431 PF01782 RimM N-terminal domain J163_01432 PF01746 tRNA (Guanine-1)-methyltransferase J163_01433 PF01245 Ribosomal protein L19 J163_01434 PF01554 MatE J163_01435 PF01554 MatE J163_01438 PF01479 S4 domain J163_01439 PF00141 Peroxidase J163_01441 PF05190 MutS family domain IV J163_01441 PF00488 MutS domain V J163_01441 PF05192 MutS domain III J163_01441 PF01624 MutS domain I J163_01441 PF05188 MutS domain II J163_01444 PF05593 RHS Repeat J163_01444 PF03527 RHS protein J163_01448 PF16355 Domain of unknown function (DUF4982) J163_01448 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J163_01448 PF00703 Glycosyl hydrolases family 2 J163_01448 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J163_01448 PF02837 Glycosyl hydrolases family 2, sugar binding domain J163_01449 PF07745 Glycosyl hydrolase family 53 J163_01451 PF01381 Helix-turn-helix J163_01451 PF06114 IrrE N-terminal-like domain J163_01451 PF09856 Predicted transcriptional regulator (DUF2083) J163_01452 PF00171 Aldehyde dehydrogenase family J163_01453 PF02770 Acyl-CoA dehydrogenase, middle domain J163_01453 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J163_01453 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J163_01454 PF00378 Enoyl-CoA hydratase/isomerase J163_01455 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J163_01455 PF00378 Enoyl-CoA hydratase/isomerase J163_01455 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J163_01456 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J163_01456 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J163_01457 PF01545 Cation efflux family J163_01458 PF00378 Enoyl-CoA hydratase/isomerase J163_01458 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J163_01458 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J163_01459 PF08281 Sigma-70, region 4 J163_01459 PF04542 Sigma-70 region 2 J163_01461 PF13180 PDZ domain J163_01462 PF03144 Elongation factor Tu domain 2 J163_01462 PF00009 Elongation factor Tu GTP binding domain J163_01462 PF00679 Elongation factor G C-terminus J163_01462 PF06421 GTP-binding protein LepA C-terminus J163_01463 PF10502 Signal peptidase, peptidase S26 J163_01465 PF14622 Ribonuclease-III-like J163_01465 PF00035 Double-stranded RNA binding motif J163_01466 PF07650 KH domain J163_01466 PF01926 50S ribosome-binding GTPase J163_01467 PF11967 Recombination protein O N terminal J163_01467 PF02565 Recombination protein O C terminal J163_01469 PF05958 tRNA (Uracil-5-)-methyltransferase J163_01471 PF01323 DSBA-like thioredoxin domain J163_01472 PF01593 Flavin containing amine oxidoreductase J163_01473 PF04244 Deoxyribodipyrimidine photo-lyase-related protein J163_01474 PF00933 Glycosyl hydrolase family 3 N terminal domain J163_01476 PF01048 Phosphorylase superfamily J163_01477 PF00313 'Cold-shock' DNA-binding domain J163_01478 PF01494 FAD binding domain J163_01480 PF00270 DEAD/DEAH box helicase J163_01480 PF00271 Helicase conserved C-terminal domain J163_01480 PF08494 DEAD/H associated J163_01481 PF04675 DNA ligase N terminus J163_01481 PF01068 ATP dependent DNA ligase domain J163_01481 PF04679 ATP dependent DNA ligase C terminal region J163_01483 PF04675 DNA ligase N terminus J163_01483 PF01068 ATP dependent DNA ligase domain J163_01483 PF04679 ATP dependent DNA ligase C terminal region J163_01486 PF00072 Response regulator receiver domain J163_01486 PF00990 Diguanylate cyclase, GGDEF domain J163_01489 PF00108 Thiolase, N-terminal domain J163_01489 PF02803 Thiolase, C-terminal domain J163_01490 PF12951 Passenger-associated-transport-repeat J163_01490 PF00082 Subtilase family J163_01490 PF03797 Autotransporter beta-domain J163_01491 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J163_01491 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain J163_01493 PF01863 Protein of unknown function DUF45 J163_01494 PF07043 Protein of unknown function (DUF1328) J163_01496 PF01258 Prokaryotic dksA/traR C4-type zinc finger J163_01500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J163_01502 PF03831 PhnA domain J163_01502 PF08274 PhnA Zinc-Ribbon J163_01503 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J163_01504 PF07690 Major Facilitator Superfamily J163_01511 PF03706 Lysylphosphatidylglycerol synthase TM region J163_01511 PF09924 Uncharacterised conserved protein (DUF2156) J163_01514 PF01042 Endoribonuclease L-PSP J163_01523 PF04545 Sigma-70, region 4 J163_01523 PF04542 Sigma-70 region 2 J163_01526 PF04060 Putative Fe-S cluster J163_01528 PF01588 Putative tRNA binding domain J163_01528 PF09334 tRNA synthetases class I (M) J163_01531 PF13732 Domain of unknown function (DUF4162) J163_01531 PF00005 ABC transporter J163_01532 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J163_01533 PF00324 Amino acid permease J163_01534 PF02574 Homocysteine S-methyltransferase J163_01536 PF02592 Putative vitamin uptake transporter J163_01540 PF03551 Transcriptional regulator PadR-like family J163_01547 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J163_01548 PF14579 Helix-hairpin-helix motif J163_01548 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J163_01548 PF01336 OB-fold nucleic acid binding domain J163_01548 PF02811 PHP domain J163_01548 PF07733 Bacterial DNA polymerase III alpha NTPase domain J163_01549 PF01351 Ribonuclease HII J163_01550 PF02684 Lipid-A-disaccharide synthetase J163_01551 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 J163_01551 PF00132 Bacterial transferase hexapeptide (six repeats) J163_01552 PF07977 FabA-like domain J163_01553 PF00132 Bacterial transferase hexapeptide (six repeats) J163_01553 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD J163_01555 PF01103 Surface antigen J163_01555 PF07244 Surface antigen variable number repeat J163_01556 PF17820 PDZ domain J163_01556 PF02163 Peptidase family M50 J163_01557 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J163_01557 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J163_01557 PF13288 DXP reductoisomerase C-terminal domain J163_01559 PF01255 Putative undecaprenyl diphosphate synthase J163_01560 PF01765 Ribosome recycling factor J163_01561 PF00696 Amino acid kinase family J163_01562 PF00072 Response regulator receiver domain J163_01562 PF00990 Diguanylate cyclase, GGDEF domain J163_01563 PF00889 Elongation factor TS J163_01564 PF00318 Ribosomal protein S2 J163_01571 PF00557 Metallopeptidase family M24 J163_01572 PF01909 Nucleotidyltransferase domain J163_01572 PF01966 HD domain J163_01572 PF08335 GlnD PII-uridylyltransferase J163_01573 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal J163_01573 PF00132 Bacterial transferase hexapeptide (six repeats) J163_01573 PF14602 Hexapeptide repeat of succinyl-transferase J163_01574 PF03960 ArsC family J163_01575 PF01546 Peptidase family M20/M25/M40 J163_01575 PF07687 Peptidase dimerisation domain J163_01576 PF00733 Asparagine synthase J163_01576 PF13537 Glutamine amidotransferase domain J163_01578 PF00593 TonB dependent receptor J163_01578 PF07715 TonB-dependent Receptor Plug Domain J163_01580 PF01804 Penicillin amidase J163_01581 PF00210 Ferritin-like domain J163_01582 PF05724 Thiopurine S-methyltransferase (TPMT) J163_01584 PF00521 DNA gyrase/topoisomerase IV, subunit A J163_01584 PF03989 DNA gyrase C-terminal domain, beta-propeller J163_01587 PF02321 Outer membrane efflux protein J163_01588 PF00529 HlyD membrane-fusion protein of T1SS J163_01588 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J163_01589 PF07690 Major Facilitator Superfamily J163_01591 PF00933 Glycosyl hydrolase family 3 N terminal domain J163_01591 PF01915 Glycosyl hydrolase family 3 C-terminal domain J163_01591 PF14310 Fibronectin type III-like domain J163_01593 PF00854 POT family J163_01598 PF12802 MarR family J163_01599 PF01432 Peptidase family M3 J163_01600 PF00255 Glutathione peroxidase J163_01601 PF00175 Oxidoreductase NAD-binding domain J163_01601 PF00970 Oxidoreductase FAD-binding domain J163_01602 PF00005 ABC transporter J163_01603 PF05681 Fumarate hydratase (Fumerase) J163_01603 PF05683 Fumarase C-terminus J163_01605 PF00484 Carbonic anhydrase J163_01606 PF02253 Phospholipase A1 J163_01608 PF00313 'Cold-shock' DNA-binding domain J163_01611 PF00899 ThiF family J163_01612 PF01026 TatD related DNase J163_01615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J163_01615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J163_01615 PF02770 Acyl-CoA dehydrogenase, middle domain J163_01617 PF02798 Glutathione S-transferase, N-terminal domain J163_01617 PF00043 Glutathione S-transferase, C-terminal domain J163_01618 PF13537 Glutamine amidotransferase domain J163_01618 PF00733 Asparagine synthase J163_01619 PF03358 NADPH-dependent FMN reductase J163_01620 PF03796 DnaB-like helicase C terminal domain J163_01620 PF00772 DnaB-like helicase N terminal domain J163_01621 PF00875 DNA photolyase J163_01621 PF03441 FAD binding domain of DNA photolyase J163_01622 PF00691 OmpA family J163_01622 PF05736 OprF membrane domain J163_01624 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_01624 PF03466 LysR substrate binding domain J163_01627 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J163_01627 PF00529 HlyD membrane-fusion protein of T1SS J163_01628 PF00873 AcrB/AcrD/AcrF family J163_01629 PF00106 short chain dehydrogenase J163_01630 PF02321 Outer membrane efflux protein J163_01631 PF00990 Diguanylate cyclase, GGDEF domain J163_01631 PF08448 PAS fold J163_01633 PF00990 Diguanylate cyclase, GGDEF domain J163_01650 PF01527 Transposase J163_01659 PF00082 Subtilase family J163_01660 PF01668 SmpB protein J163_01661 PF03364 Polyketide cyclase / dehydrase and lipid transport J163_01662 PF03658 RnfH family Ubiquitin J163_01663 PF04355 SmpA / OmlA family J163_01664 PF01475 Ferric uptake regulator family J163_01665 PF02463 RecF/RecN/SMC N terminal domain J163_01666 PF01628 HrcA protein C terminal domain J163_01666 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding J163_01667 PF01025 GrpE J163_01668 PF00012 Hsp70 protein J163_01669 PF00226 DnaJ domain J163_01669 PF01556 DnaJ C terminal domain J163_01669 PF00684 DnaJ central domain J163_01671 PF08543 Phosphomethylpyrimidine kinase J163_01676 PF00664 ABC transporter transmembrane region J163_01676 PF03412 Peptidase C39 family J163_01676 PF00005 ABC transporter J163_01677 PF03466 LysR substrate binding domain J163_01677 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_01678 PF00005 ABC transporter J163_01678 PF00664 ABC transporter transmembrane region J163_01679 PF01205 Uncharacterized protein family UPF0029 J163_01680 PF03641 Possible lysine decarboxylase J163_01681 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J163_01681 PF07992 Pyridine nucleotide-disulphide oxidoreductase J163_01682 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J163_01682 PF02817 e3 binding domain J163_01682 PF00364 Biotin-requiring enzyme J163_01683 PF16078 2-oxoglutarate dehydrogenase N-terminus J163_01683 PF16870 2-oxoglutarate dehydrogenase C-terminal J163_01683 PF00676 Dehydrogenase E1 component J163_01683 PF02779 Transketolase, pyrimidine binding domain J163_01685 PF08007 Cupin superfamily protein J163_01687 PF08328 Adenylosuccinate lyase C-terminal J163_01687 PF00206 Lyase J163_01689 PF01595 Cyclin M transmembrane N-terminal domain J163_01689 PF03471 Transporter associated domain J163_01689 PF00571 CBS domain J163_01690 PF00206 Lyase J163_01690 PF10415 Fumarase C C-terminus J163_01695 PF00005 ABC transporter J163_01696 PF00392 Bacterial regulatory proteins, gntR family J163_01698 PF00255 Glutathione peroxidase J163_01699 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J163_01699 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J163_01700 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J163_01700 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J163_01700 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J163_01701 PF04102 SlyX J163_01704 PF00356 Bacterial regulatory proteins, lacI family J163_01705 PF07690 Major Facilitator Superfamily J163_01706 PF00294 pfkB family carbohydrate kinase J163_01708 PF02574 Homocysteine S-methyltransferase J163_01708 PF02310 B12 binding domain J163_01708 PF00809 Pterin binding enzyme J163_01708 PF02965 Vitamin B12 dependent methionine synthase, activation domain J163_01708 PF02607 B12 binding domain J163_01709 PF00809 Pterin binding enzyme J163_01709 PF02574 Homocysteine S-methyltransferase J163_01710 PF01209 ubiE/COQ5 methyltransferase family J163_01711 PF02770 Acyl-CoA dehydrogenase, middle domain J163_01711 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J163_01711 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J163_01714 PF08461 Ribonuclease R winged-helix domain J163_01714 PF17876 Cold shock domain J163_01714 PF00575 S1 RNA binding domain J163_01714 PF00773 RNB domain J163_01714 PF08206 Ribonuclease B OB domain J163_01716 PF08032 RNA 2'-O ribose methyltransferase substrate binding J163_01716 PF00588 SpoU rRNA Methylase family J163_01717 PF07694 5TMR of 5TMR-LYT J163_01717 PF00990 Diguanylate cyclase, GGDEF domain J163_01718 PF00929 Exonuclease J163_01720 PF01895 PhoU domain J163_01721 PF00005 ABC transporter J163_01722 PF00528 Binding-protein-dependent transport system inner membrane component J163_01723 PF00528 Binding-protein-dependent transport system inner membrane component J163_01724 PF12849 PBP superfamily domain J163_01725 PF12849 PBP superfamily domain J163_01728 PF00484 Carbonic anhydrase J163_01729 PF00916 Sulfate permease family J163_01729 PF01740 STAS domain J163_01730 PF00730 HhH-GPD superfamily base excision DNA repair protein J163_01730 PF10576 Iron-sulfur binding domain of endonuclease III J163_01730 PF00633 Helix-hairpin-helix motif J163_01732 PF00378 Enoyl-CoA hydratase/isomerase J163_01733 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J163_01733 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J163_01734 PF00293 NUDIX domain J163_01735 PF00581 Rhodanese-like domain J163_01742 PF10672 S-adenosylmethionine-dependent methyltransferase J163_01742 PF01170 Putative RNA methylase family UPF0020 J163_01742 PF02926 THUMP domain J163_01743 PF01513 ATP-NAD kinase J163_01747 PF08411 Exonuclease C-terminal J163_01747 PF00929 Exonuclease J163_01748 PF01494 FAD binding domain J163_01749 PF00266 Aminotransferase class-V J163_01751 PF06052 3-hydroxyanthranilic acid dioxygenase J163_01752 PF00484 Carbonic anhydrase J163_01761 PF00072 Response regulator receiver domain J163_01761 PF00196 Bacterial regulatory proteins, luxR family J163_01764 PF04299 Putative FMN-binding domain J163_01768 PF01336 OB-fold nucleic acid binding domain J163_01768 PF00152 tRNA synthetases class II (D, K and N) J163_01769 PF01521 Iron-sulphur cluster biosynthesis J163_01770 PF01250 Ribosomal protein S6 J163_01771 PF01084 Ribosomal protein S18 J163_01772 PF03948 Ribosomal protein L9, C-terminal domain J163_01772 PF01281 Ribosomal protein L9, N-terminal domain J163_01773 PF02463 RecF/RecN/SMC N terminal domain J163_01774 PF04354 ZipA, C-terminal FtsZ-binding domain J163_01776 PF00155 Aminotransferase class I and II J163_01777 PF03120 NAD-dependent DNA ligase OB-fold domain J163_01777 PF01653 NAD-dependent DNA ligase adenylation domain J163_01777 PF00533 BRCA1 C Terminus (BRCT) domain J163_01777 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J163_01777 PF12826 Helix-hairpin-helix motif J163_01778 PF00152 tRNA synthetases class II (D, K and N) J163_01780 PF01008 Initiation factor 2 subunit family J163_01781 PF03989 DNA gyrase C-terminal domain, beta-propeller J163_01781 PF00521 DNA gyrase/topoisomerase IV, subunit A J163_01782 PF13360 PQQ-like domain J163_01784 PF01175 Urocanase Rossmann-like domain J163_01784 PF17391 Urocanase N-terminal domain J163_01784 PF17392 Urocanase C-terminal domain J163_01786 PF00221 Aromatic amino acid lyase J163_01787 PF07969 Amidohydrolase family J163_01789 PF07702 UTRA domain J163_01789 PF00392 Bacterial regulatory proteins, gntR family J163_01795 PF01794 Ferric reductase like transmembrane component J163_01796 PF00174 Oxidoreductase molybdopterin binding domain J163_01797 PF00266 Aminotransferase class-V J163_01798 PF01842 ACT domain J163_01798 PF01817 Chorismate mutase type II J163_01798 PF00800 Prephenate dehydratase J163_01799 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J163_01801 PF03544 Gram-negative bacterial TonB protein C-terminal J163_01802 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J163_01802 PF02403 Seryl-tRNA synthetase N-terminal domain J163_01803 PF02525 Flavodoxin-like fold J163_01804 PF03466 LysR substrate binding domain J163_01804 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_01807 PF02203 Tar ligand binding domain homologue J163_01807 PF00672 HAMP domain J163_01807 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_01810 PF00512 His Kinase A (phospho-acceptor) domain J163_01810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_01810 PF00072 Response regulator receiver domain J163_01810 PF13188 PAS domain J163_01810 PF08448 PAS fold J163_01811 PF00486 Transcriptional regulatory protein, C terminal J163_01811 PF00072 Response regulator receiver domain J163_01812 PF06745 KaiC J163_01813 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_01813 PF13426 PAS domain J163_01813 PF00072 Response regulator receiver domain J163_01815 PF03918 Cytochrome C biogenesis protein J163_01816 PF08534 Redoxin J163_01817 PF01578 Cytochrome C assembly protein J163_01817 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J163_01818 PF03100 CcmE J163_01820 PF01578 Cytochrome C assembly protein J163_01821 PF00082 Subtilase family J163_01823 PF08281 Sigma-70, region 4 J163_01823 PF04542 Sigma-70 region 2 J163_01826 PF00034 Cytochrome c J163_01829 PF05523 WxcM-like, C-terminal J163_01833 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J163_01834 PF01943 Polysaccharide biosynthesis protein J163_01835 PF00535 Glycosyl transferase family 2 J163_01838 PF08241 Methyltransferase domain J163_01842 PF00534 Glycosyl transferases group 1 J163_01842 PF13579 Glycosyl transferase 4-like domain J163_01845 PF00005 ABC transporter J163_01846 PF00005 ABC transporter J163_01846 PF00664 ABC transporter transmembrane region J163_01847 PF07690 Major Facilitator Superfamily J163_01848 PF00296 Luciferase-like monooxygenase J163_01851 PF00571 CBS domain J163_01851 PF03471 Transporter associated domain J163_01851 PF01595 Cyclin M transmembrane N-terminal domain J163_01853 PF01384 Phosphate transporter family J163_01856 PF00204 DNA gyrase B J163_01856 PF00986 DNA gyrase B subunit, carboxyl terminus J163_01856 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_01856 PF01751 Toprim domain J163_01858 PF06418 CTP synthase N-terminus J163_01858 PF00117 Glutamine amidotransferase class-I J163_01859 PF00793 DAHP synthetase I family J163_01861 PF00113 Enolase, C-terminal TIM barrel domain J163_01861 PF03952 Enolase, N-terminal domain J163_01862 PF04977 Septum formation initiator J163_01863 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J163_01864 PF02542 YgbB family J163_01865 PF01142 tRNA pseudouridine synthase D (TruD) J163_01866 PF01713 Smr domain J163_01867 PF01975 Survival protein SurE J163_01869 PF09335 SNARE associated Golgi protein J163_01870 PF01551 Peptidase family M23 J163_01870 PF01476 LysM domain J163_01872 PF04430 Protein of unknown function (DUF498/DUF598) J163_01873 PF01985 CRS1 / YhbY (CRM) domain J163_01874 PF01728 FtsJ-like methyltransferase J163_01875 PF00004 ATPase family associated with various cellular activities (AAA) J163_01875 PF01434 Peptidase family M41 J163_01875 PF17862 AAA+ lid domain J163_01875 PF06480 FtsH Extracellular J163_01876 PF00809 Pterin binding enzyme J163_01878 PF17209 Hfq protein J163_01879 PF01926 50S ribosome-binding GTPase J163_01879 PF13167 GTP-binding GTPase N-terminal J163_01879 PF16360 GTP-binding GTPase Middle Region J163_01880 PF02464 Competence-damaged protein J163_01881 PF03109 ABC1 family J163_01882 PF00717 Peptidase S24-like J163_01882 PF01726 LexA DNA binding domain J163_01883 PF00154 recA bacterial DNA recombination protein J163_01884 PF02631 RecX family J163_01885 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J163_01885 PF01411 tRNA synthetases class II (A) J163_01885 PF02272 DHHA1 domain J163_01886 PF02599 Global regulator protein family J163_01888 PF13426 PAS domain J163_01888 PF08447 PAS fold J163_01888 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_01889 PF02678 Pirin J163_01889 PF17954 Quercetinase C-terminal cupin domain J163_01890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_01890 PF03466 LysR substrate binding domain J163_01895 PF02581 Thiamine monophosphate synthase J163_01895 PF08543 Phosphomethylpyrimidine kinase J163_01898 PF02562 PhoH-like protein J163_01898 PF13638 PIN domain J163_01899 PF00578 AhpC/TSA family J163_01902 PF00701 Dihydrodipicolinate synthetase family J163_01904 PF00037 4Fe-4S binding domain J163_01904 PF11953 Domain of unknown function (DUF3470) J163_01905 PF05035 2-keto-3-deoxy-galactonokinase J163_01906 PF08450 SMP-30/Gluconolactonase/LRE-like region J163_01907 PF13378 Enolase C-terminal domain-like J163_01907 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J163_01908 PF01081 KDPG and KHG aldolase J163_01910 PF03466 LysR substrate binding domain J163_01910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_01913 PF00942 Cellulose binding domain J163_01913 PF03442 Carbohydrate binding domain X2 J163_01916 PF17137 Domain of unknown function (DUF5110) J163_01916 PF16338 Domain of unknown function (DUF4968) J163_01916 PF01055 Glycosyl hydrolases family 31 J163_01918 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J163_01918 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J163_01920 PF00083 Sugar (and other) transporter J163_01923 PF01520 N-acetylmuramoyl-L-alanine amidase J163_01924 PF02649 Type I GTP cyclohydrolase folE2 J163_01928 PF12627 Probable RNA and SrmB- binding site of polymerase A J163_01928 PF12626 Polymerase A arginine-rich C-terminus J163_01928 PF01743 Poly A polymerase head domain J163_01929 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J163_01930 PF02548 Ketopantoate hydroxymethyltransferase J163_01931 PF02569 Pantoate-beta-alanine ligase J163_01932 PF02261 Aspartate decarboxylase J163_01933 PF00342 Phosphoglucose isomerase J163_01937 PF14310 Fibronectin type III-like domain J163_01937 PF01915 Glycosyl hydrolase family 3 C-terminal domain J163_01937 PF00933 Glycosyl hydrolase family 3 N terminal domain J163_01938 PF00474 Sodium:solute symporter family J163_01939 PF00990 Diguanylate cyclase, GGDEF domain J163_01939 PF00563 EAL domain J163_01939 PF01590 GAF domain J163_01939 PF00360 Phytochrome region J163_01940 PF02013 Cellulose or protein binding domain J163_01940 PF00150 Cellulase (glycosyl hydrolase family 5) J163_01941 PF00072 Response regulator receiver domain J163_01943 PF04551 GcpE protein J163_01944 PF01569 PAP2 superfamily J163_01945 PF07690 Major Facilitator Superfamily J163_01946 PF01177 Asp/Glu/Hydantoin racemase J163_01947 PF00892 EamA-like transporter family J163_01948 PF01565 FAD binding domain J163_01948 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J163_01949 PF01180 Dihydroorotate dehydrogenase J163_01952 PF00171 Aldehyde dehydrogenase family J163_01955 PF00535 Glycosyl transferase family 2 J163_01956 PF01522 Polysaccharide deacetylase J163_01956 PF14883 Hypothetical glycosyl hydrolase family 13 J163_01958 PF08479 POTRA domain, ShlB-type J163_01958 PF17287 POTRA domain J163_01958 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB J163_01959 PF13332 Hemagglutinin repeat J163_01959 PF05594 Haemagluttinin repeat J163_01959 PF04829 Pre-toxin domain with VENN motif J163_01960 PF05594 Haemagluttinin repeat J163_01960 PF13332 Hemagglutinin repeat J163_01960 PF04829 Pre-toxin domain with VENN motif J163_01962 PF13018 Extended Signal Peptide of Type V secretion system J163_01962 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain J163_01962 PF05860 haemagglutination activity domain J163_01962 PF13332 Hemagglutinin repeat J163_01962 PF05594 Haemagluttinin repeat J163_01964 PF00696 Amino acid kinase family J163_01964 PF03447 Homoserine dehydrogenase, NAD binding domain J163_01964 PF01842 ACT domain J163_01964 PF13840 ACT domain J163_01964 PF00742 Homoserine dehydrogenase J163_01965 PF00288 GHMP kinases N terminal domain J163_01965 PF08544 GHMP kinases C terminal J163_01967 PF00291 Pyridoxal-phosphate dependent enzyme J163_01967 PF14821 Threonine synthase N terminus J163_01969 PF00027 Cyclic nucleotide-binding domain J163_01969 PF13545 Crp-like helix-turn-helix domain J163_01970 PF03129 Anticodon binding domain J163_01970 PF13393 Histidyl-tRNA synthetase J163_01972 PF08029 HisG, C-terminal domain J163_01972 PF01634 ATP phosphoribosyltransferase J163_01973 PF00815 Histidinol dehydrogenase J163_01974 PF00155 Aminotransferase class I and II J163_01975 PF00475 Imidazoleglycerol-phosphate dehydratase J163_01976 PF00117 Glutamine amidotransferase class-I J163_01977 PF00977 Histidine biosynthesis protein J163_01978 PF00977 Histidine biosynthesis protein J163_01979 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J163_01979 PF01502 Phosphoribosyl-AMP cyclohydrolase J163_01983 PF03079 ARD/ARD' family J163_01984 PF00596 Class II Aldolase and Adducin N-terminal domain J163_01985 PF13520 Amino acid permease J163_01986 PF13520 Amino acid permease J163_01988 PF01842 ACT domain J163_01988 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J163_01988 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J163_01989 PF01565 FAD binding domain J163_01989 PF02913 FAD linked oxidases, C-terminal domain J163_01993 PF09285 Elongation factor P, C-terminal J163_01993 PF08207 Elongation factor P (EF-P) KOW-like domain J163_01993 PF01132 Elongation factor P (EF-P) OB domain J163_01994 PF00106 short chain dehydrogenase J163_01995 PF00682 HMGL-like J163_01997 PF00378 Enoyl-CoA hydratase/isomerase J163_01999 PF07670 Nucleoside recognition J163_01999 PF02421 Ferrous iron transport protein B J163_01999 PF07664 Ferrous iron transport protein B C terminus J163_02002 PF00155 Aminotransferase class I and II J163_02003 PF03473 MOSC domain J163_02003 PF03475 3-alpha domain J163_02004 PF01113 Dihydrodipicolinate reductase, N-terminus J163_02004 PF05173 Dihydrodipicolinate reductase, C-terminus J163_02005 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J163_02005 PF00117 Glutamine amidotransferase class-I J163_02007 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J163_02007 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J163_02007 PF02142 MGS-like domain J163_02008 PF03449 Transcription elongation factor, N-terminal J163_02008 PF01272 Transcription elongation factor, GreA/GreB, C-term J163_02010 PF02272 DHHA1 domain J163_02010 PF17768 RecJ OB domain J163_02010 PF01368 DHH family J163_02018 PF00072 Response regulator receiver domain J163_02018 PF04397 LytTr DNA-binding domain J163_02019 PF03462 PCRF domain J163_02019 PF00472 RF-1 domain J163_02020 PF01336 OB-fold nucleic acid binding domain J163_02020 PF00152 tRNA synthetases class II (D, K and N) J163_02021 PF00072 Response regulator receiver domain J163_02022 PF00512 His Kinase A (phospho-acceptor) domain J163_02022 PF00072 Response regulator receiver domain J163_02022 PF01627 Hpt domain J163_02022 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_02023 PF00378 Enoyl-CoA hydratase/isomerase J163_02024 PF00501 AMP-binding enzyme J163_02024 PF13193 AMP-binding enzyme C-terminal domain J163_02026 PF00694 Aconitase C-terminal domain J163_02026 PF00330 Aconitase family (aconitate hydratase) J163_02029 PF00330 Aconitase family (aconitate hydratase) J163_02029 PF06434 Aconitate hydratase 2 N-terminus J163_02029 PF11791 Aconitate B N-terminal domain J163_02030 PF00561 alpha/beta hydrolase fold J163_02031 PF00563 EAL domain J163_02031 PF00990 Diguanylate cyclase, GGDEF domain J163_02031 PF03707 Bacterial signalling protein N terminal repeat J163_02032 PF01339 CheB methylesterase J163_02032 PF00072 Response regulator receiver domain J163_02033 PF03975 CheD chemotactic sensory transduction J163_02034 PF01739 CheR methyltransferase, SAM binding domain J163_02034 PF03705 CheR methyltransferase, all-alpha domain J163_02035 PF02203 Tar ligand binding domain homologue J163_02035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_02035 PF00672 HAMP domain J163_02036 PF02203 Tar ligand binding domain homologue J163_02036 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_02036 PF00672 HAMP domain J163_02037 PF02203 Tar ligand binding domain homologue J163_02037 PF00672 HAMP domain J163_02037 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_02038 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_02038 PF02203 Tar ligand binding domain homologue J163_02038 PF00672 HAMP domain J163_02039 PF00672 HAMP domain J163_02039 PF02203 Tar ligand binding domain homologue J163_02039 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_02040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_02040 PF00672 HAMP domain J163_02041 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_02041 PF00672 HAMP domain J163_02041 PF02203 Tar ligand binding domain homologue J163_02043 PF02203 Tar ligand binding domain homologue J163_02043 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_02043 PF00672 HAMP domain J163_02044 PF17200 Single Cache domain 2 J163_02044 PF00672 HAMP domain J163_02044 PF00672 HAMP domain J163_02044 PF17200 Single Cache domain 2 J163_02044 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_02044 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_02046 PF00672 HAMP domain J163_02046 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_02046 PF02203 Tar ligand binding domain homologue J163_02047 PF02895 Signal transducing histidine kinase, homodimeric domain J163_02047 PF09078 CheY binding J163_02047 PF01584 CheW-like domain J163_02047 PF01627 Hpt domain J163_02047 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_02048 PF00072 Response regulator receiver domain J163_02050 PF01584 CheW-like domain J163_02051 PF13614 AAA domain J163_02052 PF13677 Membrane MotB of proton-channel complex MotA/MotB J163_02052 PF00691 OmpA family J163_02053 PF01618 MotA/TolQ/ExbB proton channel family J163_02056 PF00069 Protein kinase domain J163_02056 PF03793 PASTA domain J163_02065 PF13333 Integrase core domain J163_02065 PF13276 HTH-like domain J163_02065 PF00665 Integrase core domain J163_02066 PF01527 Transposase J163_02072 PF04055 Radical SAM superfamily J163_02072 PF13186 Iron-sulfur cluster-binding domain J163_02075 PF07194 P2 response regulator binding domain J163_02075 PF02895 Signal transducing histidine kinase, homodimeric domain J163_02075 PF01584 CheW-like domain J163_02075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_02075 PF01627 Hpt domain J163_02076 PF04344 Chemotaxis phosphatase, CheZ J163_02077 PF00072 Response regulator receiver domain J163_02078 PF04545 Sigma-70, region 4 J163_02078 PF04539 Sigma-70 region 3 J163_02078 PF04542 Sigma-70 region 2 J163_02079 PF10609 NUBPL iron-transfer P-loop NTPase J163_02080 PF00448 SRP54-type protein, GTPase domain J163_02081 PF00771 FHIPEP family J163_02082 PF01312 FlhB HrpN YscU SpaS Family J163_02083 PF00563 EAL domain J163_02083 PF03707 Bacterial signalling protein N terminal repeat J163_02083 PF00990 Diguanylate cyclase, GGDEF domain J163_02084 PF13188 PAS domain J163_02084 PF00990 Diguanylate cyclase, GGDEF domain J163_02084 PF03707 Bacterial signalling protein N terminal repeat J163_02084 PF00563 EAL domain J163_02085 PF00563 EAL domain J163_02085 PF03707 Bacterial signalling protein N terminal repeat J163_02085 PF00990 Diguanylate cyclase, GGDEF domain J163_02085 PF13188 PAS domain J163_02086 PF01311 Bacterial export proteins, family 1 J163_02087 PF01313 Bacterial export proteins, family 3 J163_02089 PF00813 FliP family J163_02090 PF04347 Flagellar biosynthesis protein, FliO J163_02091 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J163_02092 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J163_02092 PF02154 Flagellar motor switch protein FliM J163_02096 PF18269 T3SS EscN ATPase C-terminal domain J163_02096 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J163_02098 PF14841 FliG middle domain J163_02098 PF14842 FliG N-terminal domain J163_02098 PF01706 FliG C-terminal domain J163_02099 PF08345 Flagellar M-ring protein C-terminal J163_02099 PF01514 Secretory protein of YscJ/FliF family J163_02100 PF02049 Flagellar hook-basal body complex protein FliE J163_02101 PF00535 Glycosyl transferase family 2 J163_02101 PF00534 Glycosyl transferases group 1 J163_02109 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J163_02109 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J163_02111 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J163_02112 PF02954 Bacterial regulatory protein, Fis family J163_02112 PF00072 Response regulator receiver domain J163_02112 PF00158 Sigma-54 interaction domain J163_02113 PF01339 CheB methylesterase J163_02113 PF00072 Response regulator receiver domain J163_02114 PF04963 Sigma-54 factor, core binding domain J163_02114 PF00309 Sigma-54 factor, Activator interacting domain (AID) J163_02114 PF04552 Sigma-54, DNA binding domain J163_02115 PF00072 Response regulator receiver domain J163_02115 PF00196 Bacterial regulatory proteins, luxR family J163_02118 PF02561 Flagellar protein FliS J163_02119 PF07195 Flagellar hook-associated protein 2 C-terminus J163_02119 PF07196 Flagellin hook IN motif J163_02119 PF02465 Flagellar hook-associated protein 2 N-terminus J163_02120 PF00700 Bacterial flagellin C-terminal helical region J163_02120 PF00669 Bacterial flagellin N-terminal helical region J163_02121 PF00700 Bacterial flagellin C-terminal helical region J163_02121 PF00669 Bacterial flagellin N-terminal helical region J163_02122 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J163_02122 PF07196 Flagellin hook IN motif J163_02123 PF10135 Rod binding protein J163_02123 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J163_02124 PF02119 Flagellar P-ring protein J163_02125 PF02107 Flagellar L-ring protein J163_02126 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J163_02126 PF00460 Flagella basal body rod protein J163_02127 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J163_02127 PF00460 Flagella basal body rod protein J163_02128 PF00460 Flagella basal body rod protein J163_02128 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J163_02128 PF07559 Flagellar basal body protein FlaE J163_02129 PF03963 Flagellar hook capping protein - N-terminal region J163_02130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J163_02130 PF00460 Flagella basal body rod protein J163_02132 PF01584 CheW-like domain J163_02132 PF00072 Response regulator receiver domain J163_02136 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_02136 PF00512 His Kinase A (phospho-acceptor) domain J163_02136 PF00989 PAS fold J163_02136 PF13188 PAS domain J163_02136 PF13426 PAS domain J163_02137 PF00563 EAL domain J163_02137 PF00990 Diguanylate cyclase, GGDEF domain J163_02137 PF03707 Bacterial signalling protein N terminal repeat J163_02138 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_02138 PF07730 Histidine kinase J163_02139 PF00990 Diguanylate cyclase, GGDEF domain J163_02139 PF03707 Bacterial signalling protein N terminal repeat J163_02139 PF00563 EAL domain J163_02141 PF00672 HAMP domain J163_02141 PF12729 Four helix bundle sensory module for signal transduction J163_02141 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_02142 PF04356 Protein of unknown function (DUF489) J163_02144 PF00293 NUDIX domain J163_02145 PF02617 ATP-dependent Clp protease adaptor protein ClpS J163_02146 PF00004 ATPase family associated with various cellular activities (AAA) J163_02146 PF07724 AAA domain (Cdc48 subfamily) J163_02146 PF10431 C-terminal, D2-small domain, of ClpB protein J163_02146 PF02861 Clp amino terminal domain, pathogenicity island component J163_02146 PF17871 AAA lid domain J163_02147 PF01176 Translation initiation factor 1A / IF-1 J163_02148 PF03588 Leucyl/phenylalanyl-tRNA protein transferase J163_02150 PF07992 Pyridine nucleotide-disulphide oxidoreductase J163_02151 PF17854 FtsK alpha domain J163_02151 PF01580 FtsK/SpoIIIE family J163_02151 PF09397 Ftsk gamma domain J163_02151 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J163_02153 PF03548 Outer membrane lipoprotein carrier protein LolA J163_02155 PF00004 ATPase family associated with various cellular activities (AAA) J163_02155 PF16193 AAA C-terminal domain J163_02155 PF12002 MgsA AAA+ ATPase C terminal J163_02157 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J163_02159 PF00108 Thiolase, N-terminal domain J163_02159 PF02803 Thiolase, C-terminal domain J163_02160 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J163_02160 PF00378 Enoyl-CoA hydratase/isomerase J163_02160 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J163_02162 PF00334 Nucleoside diphosphate kinase J163_02163 PF04055 Radical SAM superfamily J163_02165 PF13464 Domain of unknown function (DUF4115) J163_02167 PF01011 PQQ enzyme repeat J163_02167 PF13360 PQQ-like domain J163_02168 PF01926 50S ribosome-binding GTPase J163_02168 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J163_02169 PF03454 MoeA C-terminal region (domain IV) J163_02169 PF00994 Probable molybdopterin binding domain J163_02169 PF03453 MoeA N-terminal region (domain I and II) J163_02170 PF00899 ThiF family J163_02175 PF08240 Alcohol dehydrogenase GroES-like domain J163_02175 PF13823 Alcohol dehydrogenase GroES-associated J163_02175 PF00107 Zinc-binding dehydrogenase J163_02177 PF03372 Endonuclease/Exonuclease/phosphatase family J163_02179 PF00994 Probable molybdopterin binding domain J163_02179 PF03454 MoeA C-terminal region (domain IV) J163_02179 PF03453 MoeA N-terminal region (domain I and II) J163_02180 PF12804 MobA-like NTP transferase domain J163_02182 PF00561 alpha/beta hydrolase fold J163_02183 PF01566 Natural resistance-associated macrophage protein J163_02184 PF01325 Iron dependent repressor, N-terminal DNA binding domain J163_02184 PF02742 Iron dependent repressor, metal binding and dimerisation domain J163_02185 PF14437 MafB19-like deaminase J163_02186 PF00929 Exonuclease J163_02187 PF00924 Mechanosensitive ion channel J163_02187 PF05552 Conserved TM helix J163_02188 PF02896 PEP-utilising enzyme, TIM barrel domain J163_02188 PF00391 PEP-utilising enzyme, mobile domain J163_02188 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J163_02189 PF03618 Kinase/pyrophosphorylase J163_02193 PF01066 CDP-alcohol phosphatidyltransferase J163_02195 PF00561 alpha/beta hydrolase fold J163_02198 PF01266 FAD dependent oxidoreductase J163_02198 PF00355 Rieske [2Fe-2S] domain J163_02200 PF17674 HHH domain J163_02200 PF16921 Tex protein YqgF-like domain J163_02200 PF09371 Tex-like protein N-terminal domain J163_02200 PF00575 S1 RNA binding domain J163_02201 PF00512 His Kinase A (phospho-acceptor) domain J163_02201 PF00072 Response regulator receiver domain J163_02201 PF09308 LuxQ, periplasmic J163_02201 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_02209 PF00034 Cytochrome c J163_02211 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J163_02212 PF00873 AcrB/AcrD/AcrF family J163_02213 PF00873 AcrB/AcrD/AcrF family J163_02214 PF01081 KDPG and KHG aldolase J163_02215 PF00920 Dehydratase family J163_02216 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J163_02217 PF02685 Glucokinase J163_02218 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J163_02218 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J163_02219 PF17912 MalK OB fold domain J163_02219 PF00005 ABC transporter J163_02222 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J163_02223 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J163_02224 PF02910 Fumarate reductase flavoprotein C-term J163_02224 PF00890 FAD binding domain J163_02226 PF13085 2Fe-2S iron-sulfur cluster binding domain J163_02227 PF03937 Flavinator of succinate dehydrogenase J163_02229 PF12704 MacB-like periplasmic core domain J163_02229 PF02687 FtsX-like permease family J163_02230 PF00005 ABC transporter J163_02232 PF00753 Metallo-beta-lactamase superfamily J163_02232 PF03772 Competence protein J163_02233 PF01618 MotA/TolQ/ExbB proton channel family J163_02235 PF00664 ABC transporter transmembrane region J163_02235 PF00005 ABC transporter J163_02236 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J163_02237 PF02348 Cytidylyltransferase J163_02238 PF01451 Low molecular weight phosphotyrosine protein phosphatase J163_02240 PF01541 GIY-YIG catalytic domain J163_02240 PF08459 UvrC Helix-hairpin-helix N-terminal J163_02240 PF02151 UvrB/uvrC motif J163_02241 PF01066 CDP-alcohol phosphatidyltransferase J163_02245 PF00550 Phosphopantetheine attachment site J163_02245 PF13193 AMP-binding enzyme C-terminal domain J163_02245 PF00501 AMP-binding enzyme J163_02245 PF00668 Condensation domain J163_02246 PF00975 Thioesterase domain J163_02246 PF00550 Phosphopantetheine attachment site J163_02246 PF00668 Condensation domain J163_02246 PF13193 AMP-binding enzyme C-terminal domain J163_02246 PF00501 AMP-binding enzyme J163_02248 PF01527 Transposase J163_02250 PF01527 Transposase J163_02251 PF00589 Phage integrase family J163_02253 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J163_02253 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J163_02253 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J163_02255 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J163_02258 PF00196 Bacterial regulatory proteins, luxR family J163_02258 PF00072 Response regulator receiver domain J163_02259 PF10150 Ribonuclease E/G family J163_02259 PF12111 Polyribonucleotide phosphorylase C terminal J163_02259 PF00575 S1 RNA binding domain J163_02260 PF00849 RNA pseudouridylate synthase J163_02260 PF01479 S4 domain J163_02261 PF11737 Protein of unknown function (DUF3300) J163_02262 PF02535 ZIP Zinc transporter J163_02264 PF01329 Pterin 4 alpha carbinolamine dehydratase J163_02265 PF01106 NifU-like domain J163_02274 PF12697 Alpha/beta hydrolase family J163_02274 PF08241 Methyltransferase domain J163_02276 PF00106 short chain dehydrogenase J163_02277 PF13276 HTH-like domain J163_02277 PF00665 Integrase core domain J163_02277 PF13333 Integrase core domain J163_02278 PF01527 Transposase J163_02279 PF01494 FAD binding domain J163_02280 PF09335 SNARE associated Golgi protein J163_02282 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J163_02283 PF07995 Glucose / Sorbosone dehydrogenase J163_02285 PF00144 Beta-lactamase J163_02286 PF00072 Response regulator receiver domain J163_02286 PF04397 LytTr DNA-binding domain J163_02287 PF07694 5TMR of 5TMR-LYT J163_02287 PF06580 Histidine kinase J163_02287 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_02289 PF00082 Subtilase family J163_02289 PF03797 Autotransporter beta-domain J163_02290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J163_02291 PF00873 AcrB/AcrD/AcrF family J163_02293 PF13426 PAS domain J163_02293 PF00072 Response regulator receiver domain J163_02293 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_02293 PF08448 PAS fold J163_02293 PF00512 His Kinase A (phospho-acceptor) domain J163_02294 PF00196 Bacterial regulatory proteins, luxR family J163_02294 PF00072 Response regulator receiver domain J163_02295 PF12951 Passenger-associated-transport-repeat J163_02295 PF12951 Passenger-associated-transport-repeat J163_02296 PF08447 PAS fold J163_02296 PF08448 PAS fold J163_02296 PF00990 Diguanylate cyclase, GGDEF domain J163_02296 PF00563 EAL domain J163_02299 PF05974 Domain of unknown function (DUF892) J163_02301 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J163_02303 PF14824 Sirohaem biosynthesis protein central J163_02303 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J163_02303 PF10414 Sirohaem synthase dimerisation region J163_02306 PF05977 Transmembrane secretion effector J163_02307 PF07969 Amidohydrolase family J163_02309 PF00857 Isochorismatase family J163_02312 PF00072 Response regulator receiver domain J163_02312 PF00196 Bacterial regulatory proteins, luxR family J163_02315 PF03466 LysR substrate binding domain J163_02315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_02316 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus J163_02316 PF00361 Proton-conducting membrane transporter J163_02316 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J163_02317 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) J163_02318 PF13276 HTH-like domain J163_02318 PF13333 Integrase core domain J163_02318 PF00665 Integrase core domain J163_02319 PF01527 Transposase J163_02320 PF01381 Helix-turn-helix J163_02321 PF05284 Protein of unknown function (DUF736) J163_02322 PF04002 RadC-like JAB domain J163_02327 PF13356 Arm DNA-binding domain J163_02327 PF00589 Phage integrase family J163_02330 PF00593 TonB dependent receptor J163_02330 PF07715 TonB-dependent Receptor Plug Domain J163_02334 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin J163_02339 PF07715 TonB-dependent Receptor Plug Domain J163_02339 PF00593 TonB dependent receptor J163_02342 PF10947 Protein of unknown function (DUF2628) J163_02344 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) J163_02344 PF00722 Glycosyl hydrolases family 16 J163_02349 PF03412 Peptidase C39 family J163_02349 PF00664 ABC transporter transmembrane region J163_02349 PF00005 ABC transporter J163_02351 PF13614 AAA domain J163_02359 PF01751 Toprim domain J163_02359 PF01131 DNA topoisomerase J163_02360 PF00145 C-5 cytosine-specific DNA methylase J163_02372 PF17761 DUF1016 N-terminal domain J163_02372 PF06250 YhcG PDDEXK nuclease domain J163_02373 PF01527 Transposase J163_02374 PF13276 HTH-like domain J163_02374 PF00665 Integrase core domain J163_02374 PF13333 Integrase core domain J163_02375 PF00892 EamA-like transporter family J163_02376 PF00892 EamA-like transporter family J163_02378 PF02525 Flavodoxin-like fold J163_02379 PF02798 Glutathione S-transferase, N-terminal domain J163_02379 PF00043 Glutathione S-transferase, C-terminal domain J163_02380 PF05544 Proline racemase J163_02381 PF03358 NADPH-dependent FMN reductase J163_02383 PF07690 Major Facilitator Superfamily J163_02384 PF02311 AraC-like ligand binding domain J163_02384 PF12833 Helix-turn-helix domain J163_02414 PF12462 DNA helicase IV / RNA helicase N terminal J163_02414 PF00580 UvrD/REP helicase N-terminal domain J163_02414 PF13361 UvrD-like helicase C-terminal domain J163_02429 PF03466 LysR substrate binding domain J163_02429 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_02430 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J163_02430 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J163_02431 PF03401 Tripartite tricarboxylate transporter family receptor J163_02435 PF04002 RadC-like JAB domain J163_02442 PF00589 Phage integrase family J163_02442 PF13356 Arm DNA-binding domain J163_02443 PF00958 GMP synthase C terminal domain J163_02443 PF00117 Glutamine amidotransferase class-I J163_02443 PF02540 NAD synthase J163_02444 PF00478 IMP dehydrogenase / GMP reductase domain J163_02444 PF00571 CBS domain J163_02445 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J163_02445 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J163_02447 PF02254 TrkA-N domain J163_02447 PF00999 Sodium/hydrogen exchanger family J163_02448 PF00483 Nucleotidyl transferase J163_02449 PF02719 Polysaccharide biosynthesis protein J163_02450 PF00953 Glycosyl transferase family 4 J163_02451 PF18073 Rubredoxin metal binding domain J163_02453 PF00216 Bacterial DNA-binding protein J163_02454 PF00575 S1 RNA binding domain J163_02455 PF02224 Cytidylate kinase J163_02456 PF00444 Ribosomal protein L36 J163_02459 PF04371 Porphyromonas-type peptidyl-arginine deiminase J163_02460 PF00795 Carbon-nitrogen hydrolase J163_02465 PF00528 Binding-protein-dependent transport system inner membrane component J163_02466 PF00528 Binding-protein-dependent transport system inner membrane component J163_02470 PF00356 Bacterial regulatory proteins, lacI family J163_02472 PF03795 YCII-related domain J163_02473 PF02616 Segregation and condensation protein ScpA J163_02474 PF04079 Segregation and condensation complex subunit ScpB J163_02475 PF01479 S4 domain J163_02475 PF00849 RNA pseudouridylate synthase J163_02478 PF00795 Carbon-nitrogen hydrolase J163_02479 PF00155 Aminotransferase class I and II J163_02480 PF00005 ABC transporter J163_02481 PF03379 CcmB protein J163_02482 PF01578 Cytochrome C assembly protein J163_02484 PF03100 CcmE J163_02485 PF01578 Cytochrome C assembly protein J163_02485 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J163_02486 PF08534 Redoxin J163_02487 PF03918 Cytochrome C biogenesis protein J163_02489 PF00561 alpha/beta hydrolase fold J163_02490 PF00313 'Cold-shock' DNA-binding domain J163_02491 PF00005 ABC transporter J163_02491 PF00664 ABC transporter transmembrane region J163_02492 PF00005 ABC transporter J163_02492 PF00664 ABC transporter transmembrane region J163_02493 PF01654 Cytochrome bd terminal oxidase subunit I J163_02494 PF02322 Cytochrome bd terminal oxidase subunit II J163_02498 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J163_02498 PF02129 X-Pro dipeptidyl-peptidase (S15 family) J163_02499 PF00171 Aldehyde dehydrogenase family J163_02500 PF01472 PUA domain J163_02500 PF00696 Amino acid kinase family J163_02502 PF00206 Lyase J163_02503 PF01118 Semialdehyde dehydrogenase, NAD binding domain J163_02505 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase J163_02505 PF00696 Amino acid kinase family J163_02508 PF00764 Arginosuccinate synthase J163_02509 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J163_02509 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J163_02511 PF09190 DALR domain J163_02511 PF01406 tRNA synthetases class I (C) catalytic domain J163_02512 PF02657 Fe-S metabolism associated domain J163_02514 PF01258 Prokaryotic dksA/traR C4-type zinc finger J163_02515 PF01809 Putative membrane protein insertion efficiency factor J163_02516 PF01979 Amidohydrolase family J163_02517 PF08460 Bacterial SH3 domain J163_02517 PF01551 Peptidase family M23 J163_02520 PF06751 Ethanolamine ammonia lyase large subunit (EutB) J163_02521 PF05985 Ethanolamine ammonia-lyase light chain (EutC) J163_02523 PF00753 Metallo-beta-lactamase superfamily J163_02527 PF01527 Transposase J163_02530 PF00295 Glycosyl hydrolases family 28 J163_02532 PF13419 Haloacid dehalogenase-like hydrolase J163_02534 PF01979 Amidohydrolase family J163_02536 PF08207 Elongation factor P (EF-P) KOW-like domain J163_02536 PF01132 Elongation factor P (EF-P) OB domain J163_02536 PF09285 Elongation factor P, C-terminal J163_02537 PF04055 Radical SAM superfamily J163_02538 PF00563 EAL domain J163_02538 PF00990 Diguanylate cyclase, GGDEF domain J163_02538 PF03707 Bacterial signalling protein N terminal repeat J163_02538 PF13188 PAS domain J163_02540 PF00588 SpoU rRNA Methylase family J163_02541 PF00459 Inositol monophosphatase family J163_02542 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J163_02542 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J163_02543 PF00545 ribonuclease J163_02546 PF00271 Helicase conserved C-terminal domain J163_02546 PF03880 DbpA RNA binding domain J163_02546 PF00270 DEAD/DEAH box helicase J163_02547 PF00156 Phosphoribosyl transferase domain J163_02548 PF02696 Uncharacterized ACR, YdiU/UPF0061 family J163_02549 PF00135 Carboxylesterase family J163_02550 PF02798 Glutathione S-transferase, N-terminal domain J163_02550 PF14497 Glutathione S-transferase, C-terminal domain J163_02551 PF00313 'Cold-shock' DNA-binding domain J163_02552 PF07152 YaeQ protein J163_02554 PF00072 Response regulator receiver domain J163_02554 PF00563 EAL domain J163_02554 PF00990 Diguanylate cyclase, GGDEF domain J163_02555 PF01435 Peptidase family M48 J163_02556 PF00749 tRNA synthetases class I (E and Q), catalytic domain J163_02557 PF00106 short chain dehydrogenase J163_02558 PF07879 PHB/PHA accumulation regulator DNA-binding domain J163_02558 PF05233 PHB accumulation regulatory domain J163_02561 PF01119 DNA mismatch repair protein, C-terminal domain J163_02561 PF08676 MutL C terminal dimerisation domain J163_02562 PF11741 AMIN domain J163_02562 PF01520 N-acetylmuramoyl-L-alanine amidase J163_02563 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J163_02564 PF03853 YjeF-related protein N-terminus J163_02564 PF01256 Carbohydrate kinase J163_02565 PF08331 Domain of unknown function (DUF1730) J163_02566 PF02601 Exonuclease VII, large subunit J163_02566 PF13742 OB-fold nucleic acid binding domain J163_02568 PF03781 Sulfatase-modifying factor enzyme 1 J163_02569 PF01612 3'-5' exonuclease J163_02569 PF00570 HRDC domain J163_02571 PF04679 ATP dependent DNA ligase C terminal region J163_02571 PF01068 ATP dependent DNA ligase domain J163_02571 PF13298 DNA polymerase Ligase (LigD) J163_02575 PF00589 Phage integrase family J163_02579 PF05598 Transposase domain (DUF772) J163_02581 PF01527 Transposase J163_02585 PF14850 DNA-binding domain of Proline dehydrogenase J163_02585 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J163_02585 PF01619 Proline dehydrogenase J163_02585 PF00171 Aldehyde dehydrogenase family J163_02587 PF01527 Transposase J163_02589 PF13276 HTH-like domain J163_02589 PF00665 Integrase core domain J163_02589 PF13333 Integrase core domain J163_02591 PF00239 Resolvase, N terminal domain J163_02591 PF02796 Helix-turn-helix domain of resolvase J163_02594 PF02384 N-6 DNA Methylase J163_02595 PF09572 XamI restriction endonuclease J163_02607 PF01584 CheW-like domain J163_02608 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_02608 PF00672 HAMP domain J163_02608 PF12729 Four helix bundle sensory module for signal transduction J163_02609 PF02245 Methylpurine-DNA glycosylase (MPG) J163_02610 PF00271 Helicase conserved C-terminal domain J163_02610 PF08494 DEAD/H associated J163_02610 PF00270 DEAD/DEAH box helicase J163_02613 PF04386 Stringent starvation protein B J163_02614 PF00043 Glutathione S-transferase, C-terminal domain J163_02614 PF02798 Glutathione S-transferase, N-terminal domain J163_02615 PF02167 Cytochrome C1 family J163_02616 PF00032 Cytochrome b(C-terminal)/b6/petD J163_02616 PF00033 Cytochrome b/b6/petB J163_02617 PF00355 Rieske [2Fe-2S] domain J163_02617 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal J163_02618 PF01464 Transglycosylase SLT domain J163_02621 PF04055 Radical SAM superfamily J163_02621 PF01938 TRAM domain J163_02621 PF00919 Uncharacterized protein family UPF0004 J163_02622 PF02562 PhoH-like protein J163_02624 PF02130 Uncharacterized protein family UPF0054 J163_02626 PF03471 Transporter associated domain J163_02626 PF00571 CBS domain J163_02629 PF00171 Aldehyde dehydrogenase family J163_02630 PF00528 Binding-protein-dependent transport system inner membrane component J163_02631 PF00528 Binding-protein-dependent transport system inner membrane component J163_02632 PF08402 TOBE domain J163_02632 PF00005 ABC transporter J163_02633 PF02321 Outer membrane efflux protein J163_02634 PF07690 Major Facilitator Superfamily J163_02635 PF13533 Biotin-lipoyl like J163_02636 PF13416 Bacterial extracellular solute-binding protein J163_02637 PF00202 Aminotransferase class-III J163_02638 PF00120 Glutamine synthetase, catalytic domain J163_02639 PF07722 Peptidase C26 J163_02640 PF00120 Glutamine synthetase, catalytic domain J163_02641 PF01266 FAD dependent oxidoreductase J163_02642 PF00990 Diguanylate cyclase, GGDEF domain J163_02642 PF00072 Response regulator receiver domain J163_02643 PF01814 Hemerythrin HHE cation binding domain J163_02644 PF07690 Major Facilitator Superfamily J163_02644 PF00083 Sugar (and other) transporter J163_02646 PF00384 Molybdopterin oxidoreductase J163_02647 PF02634 FdhD/NarQ family J163_02648 PF07690 Major Facilitator Superfamily J163_02649 PF00202 Aminotransferase class-III J163_02651 PF04286 Protein of unknown function (DUF445) J163_02652 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_02652 PF00512 His Kinase A (phospho-acceptor) domain J163_02652 PF00672 HAMP domain J163_02652 PF00072 Response regulator receiver domain J163_02652 PF01627 Hpt domain J163_02652 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J163_02653 PF00072 Response regulator receiver domain J163_02654 PF07690 Major Facilitator Superfamily J163_02655 PF05088 Bacterial NAD-glutamate dehydrogenase J163_02657 PF00529 HlyD membrane-fusion protein of T1SS J163_02657 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J163_02658 PF00873 AcrB/AcrD/AcrF family J163_02659 PF00356 Bacterial regulatory proteins, lacI family J163_02660 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J163_02660 PF00381 PTS HPr component phosphorylation site J163_02660 PF02896 PEP-utilising enzyme, TIM barrel domain J163_02660 PF00391 PEP-utilising enzyme, mobile domain J163_02660 PF05524 PEP-utilising enzyme, N-terminal J163_02661 PF00294 pfkB family carbohydrate kinase J163_02662 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J163_02670 PF02355 Protein export membrane protein J163_02670 PF07549 SecD/SecF GG Motif J163_02671 PF02355 Protein export membrane protein J163_02671 PF07549 SecD/SecF GG Motif J163_02671 PF13721 SecD export protein N-terminal TM region J163_02672 PF02699 Preprotein translocase subunit J163_02673 PF01702 Queuine tRNA-ribosyltransferase J163_02674 PF02547 Queuosine biosynthesis protein J163_02683 PF02927 Cellulase N-terminal ig-like domain J163_02683 PF00759 Glycosyl hydrolase family 9 J163_02685 PF00037 4Fe-4S binding domain J163_02688 PF01467 Cytidylyltransferase-like J163_02690 PF00183 Hsp90 protein J163_02690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_02694 PF07715 TonB-dependent Receptor Plug Domain J163_02694 PF00593 TonB dependent receptor J163_02696 PF04616 Glycosyl hydrolases family 43 J163_02697 PF07532 Bacterial Ig-like domain (group 4) J163_02698 PF00593 TonB dependent receptor J163_02698 PF07715 TonB-dependent Receptor Plug Domain J163_02700 PF09286 Pro-kumamolisin, activation domain J163_02700 PF00082 Subtilase family J163_02706 PF13520 Amino acid permease J163_02709 PF01321 Creatinase/Prolidase N-terminal domain J163_02709 PF00557 Metallopeptidase family M24 J163_02710 PF00171 Aldehyde dehydrogenase family J163_02711 PF00701 Dihydrodipicolinate synthetase family J163_02712 PF07992 Pyridine nucleotide-disulphide oxidoreductase J163_02712 PF04324 BFD-like [2Fe-2S] binding domain J163_02714 PF01266 FAD dependent oxidoreductase J163_02715 PF05544 Proline racemase J163_02717 PF02881 SRP54-type protein, helical bundle domain J163_02717 PF00448 SRP54-type protein, GTPase domain J163_02718 PF00730 HhH-GPD superfamily base excision DNA repair protein J163_02718 PF14815 NUDIX domain J163_02718 PF10576 Iron-sulfur binding domain of endonuclease III J163_02718 PF00633 Helix-hairpin-helix motif J163_02719 PF04362 Bacterial Fe(2+) trafficking J163_02720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_02720 PF00072 Response regulator receiver domain J163_02720 PF13426 PAS domain J163_02726 PF08212 Lipocalin-like domain J163_02728 PF12806 Acetyl-CoA dehydrogenase C-terminal like J163_02728 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J163_02728 PF02770 Acyl-CoA dehydrogenase, middle domain J163_02728 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J163_02730 PF02780 Transketolase, C-terminal domain J163_02730 PF02779 Transketolase, pyrimidine binding domain J163_02730 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J163_02734 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family J163_02735 PF16123 Hydroxyacylglutathione hydrolase C-terminus J163_02735 PF00753 Metallo-beta-lactamase superfamily J163_02736 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J163_02736 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J163_02739 PF03808 Glycosyl transferase WecB/TagA/CpsF family J163_02742 PF14667 Polysaccharide biosynthesis C-terminal domain J163_02744 PF00534 Glycosyl transferases group 1 J163_02744 PF13439 Glycosyltransferase Family 4 J163_02748 PF02397 Bacterial sugar transferase J163_02752 PF13411 MerR HTH family regulatory protein J163_02753 PF00216 Bacterial DNA-binding protein J163_02754 PF03484 tRNA synthetase B5 domain J163_02754 PF03147 Ferredoxin-fold anticodon binding domain J163_02754 PF01588 Putative tRNA binding domain J163_02754 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J163_02754 PF03483 B3/4 domain J163_02755 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J163_02755 PF01409 tRNA synthetases class II core domain (F) J163_02756 PF00453 Ribosomal protein L20 J163_02757 PF01632 Ribosomal protein L35 J163_02759 PF05198 Translation initiation factor IF-3, N-terminal domain J163_02759 PF00707 Translation initiation factor IF-3, C-terminal domain J163_02760 PF02824 TGS domain J163_02760 PF03129 Anticodon binding domain J163_02760 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J163_02760 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J163_02761 PF00356 Bacterial regulatory proteins, lacI family J163_02762 PF00128 Alpha amylase, catalytic domain J163_02762 PF00686 Starch binding domain J163_02763 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J163_02765 PF14508 Glycosyl-hydrolase 97 N-terminal J163_02765 PF10566 Glycoside hydrolase 97 J163_02765 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation J163_02769 PF00128 Alpha amylase, catalytic domain J163_02771 PF01527 Transposase J163_02780 PF03135 CagE, TrbE, VirB family, component of type IV transporter system J163_02783 PF01464 Transglycosylase SLT domain J163_02784 PF00437 Type II/IV secretion system protein J163_02785 PF03743 Bacterial conjugation TrbI-like protein J163_02789 PF02534 Type IV secretory system Conjugative DNA transfer J163_02792 PF12344 Ultra-violet resistance protein B J163_02792 PF02151 UvrB/uvrC motif J163_02792 PF04851 Type III restriction enzyme, res subunit J163_02792 PF00271 Helicase conserved C-terminal domain J163_02792 PF17757 UvrB interaction domain J163_02800 PF01527 Transposase J163_02801 PF00665 Integrase core domain J163_02801 PF13276 HTH-like domain J163_02801 PF13333 Integrase core domain J163_02807 PF01555 DNA methylase J163_02817 PF00182 Chitinase class I J163_02827 PF13276 HTH-like domain J163_02827 PF00665 Integrase core domain J163_02827 PF13333 Integrase core domain J163_02828 PF01527 Transposase J163_02829 PF07963 Prokaryotic N-terminal methylation motif J163_02829 PF00114 Pilin (bacterial filament) J163_02830 PF05567 Neisseria PilC beta-propeller domain J163_02834 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_02834 PF06580 Histidine kinase J163_02834 PF07694 5TMR of 5TMR-LYT J163_02835 PF03641 Possible lysine decarboxylase J163_02835 PF11892 Domain of unknown function (DUF3412) J163_02835 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases J163_02836 PF00593 TonB dependent receptor J163_02837 PF01914 MarC family integral membrane protein J163_02839 PF00462 Glutaredoxin J163_02840 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J163_02840 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J163_02841 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J163_02841 PF02222 ATP-grasp domain J163_02842 PF00731 AIR carboxylase J163_02844 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain J163_02844 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain J163_02846 PF03725 3' exoribonuclease family, domain 2 J163_02846 PF00013 KH domain J163_02846 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J163_02846 PF01138 3' exoribonuclease family, domain 1 J163_02846 PF00575 S1 RNA binding domain J163_02847 PF00312 Ribosomal protein S15 J163_02848 PF01509 TruB family pseudouridylate synthase (N terminal domain) J163_02848 PF09157 Pseudouridine synthase II TruB, C-terminal J163_02848 PF16198 tRNA pseudouridylate synthase B C-terminal domain J163_02849 PF02033 Ribosome-binding factor A J163_02850 PF04760 Translation initiation factor IF-2, N-terminal region J163_02850 PF00009 Elongation factor Tu GTP binding domain J163_02850 PF08364 Bacterial translation initiation factor IF-2 associated region J163_02850 PF11987 Translation-initiation factor 2 J163_02851 PF13184 NusA-like KH domain J163_02851 PF08529 NusA N-terminal domain J163_02851 PF00575 S1 RNA binding domain J163_02852 PF17384 RimP C-terminal SH3 domain J163_02852 PF02576 RimP N-terminal domain J163_02854 PF00361 Proton-conducting membrane transporter J163_02855 PF00361 Proton-conducting membrane transporter J163_02855 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus J163_02856 PF00361 Proton-conducting membrane transporter J163_02856 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J163_02857 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J163_02858 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 J163_02859 PF12838 4Fe-4S dicluster domain J163_02860 PF00146 NADH dehydrogenase J163_02861 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal J163_02861 PF00384 Molybdopterin oxidoreductase J163_02861 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J163_02862 PF10531 SLBB domain J163_02862 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J163_02862 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J163_02864 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit J163_02865 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit J163_02866 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit J163_02867 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 J163_02870 PF00121 Triosephosphate isomerase J163_02871 PF00106 short chain dehydrogenase J163_02874 PF00990 Diguanylate cyclase, GGDEF domain J163_02874 PF00563 EAL domain J163_02874 PF03707 Bacterial signalling protein N terminal repeat J163_02877 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J163_02877 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J163_02877 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J163_02877 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J163_02878 PF17848 Acetyl-coA carboxylase zinc finger domain J163_02878 PF01039 Carboxyl transferase domain J163_02879 PF00290 Tryptophan synthase alpha chain J163_02881 PF00291 Pyridoxal-phosphate dependent enzyme J163_02882 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_02882 PF03466 LysR substrate binding domain J163_02883 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase J163_02884 PF01416 tRNA pseudouridine synthase J163_02888 PF02774 Semialdehyde dehydrogenase, dimerisation domain J163_02888 PF01118 Semialdehyde dehydrogenase, NAD binding domain J163_02889 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J163_02889 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J163_02890 PF01264 Chorismate synthase J163_02891 PF05175 Methyltransferase small domain J163_02892 PF02630 SCO1/SenC J163_02893 PF02666 Phosphatidylserine decarboxylase J163_02895 PF05872 Bacterial protein of unknown function (DUF853) J163_02896 PF00293 NUDIX domain J163_02899 PF03449 Transcription elongation factor, N-terminal J163_02899 PF01272 Transcription elongation factor, GreA/GreB, C-term J163_02900 PF00919 Uncharacterized protein family UPF0004 J163_02900 PF18693 TRAM domain J163_02900 PF04055 Radical SAM superfamily J163_02901 PF01738 Dienelactone hydrolase family J163_02905 PF00692 dUTPase J163_02906 PF10609 NUBPL iron-transfer P-loop NTPase J163_02907 PF07715 TonB-dependent Receptor Plug Domain J163_02907 PF00593 TonB dependent receptor J163_02910 PF01431 Peptidase family M13 J163_02910 PF05649 Peptidase family M13 J163_02911 PF05649 Peptidase family M13 J163_02911 PF01431 Peptidase family M13 J163_02914 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J163_02915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J163_02915 PF07992 Pyridine nucleotide-disulphide oxidoreductase J163_02916 PF01266 FAD dependent oxidoreductase J163_02917 PF04235 Protein of unknown function (DUF418) J163_02918 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J163_02919 PF00877 NlpC/P60 family J163_02920 PF00877 NlpC/P60 family J163_02923 PF00375 Sodium:dicarboxylate symporter family J163_02924 PF00245 Alkaline phosphatase J163_02925 PF11734 TilS substrate C-terminal domain J163_02925 PF09179 TilS substrate binding domain J163_02925 PF01171 PP-loop family J163_02926 PF02609 Exonuclease VII small subunit J163_02927 PF00348 Polyprenyl synthetase J163_02928 PF14521 Lysine-specific metallo-endopeptidase J163_02930 PF01523 Putative modulator of DNA gyrase J163_02931 PF04751 Protein of unknown function (DUF615) J163_02932 PF01523 Putative modulator of DNA gyrase J163_02934 PF13502 AsmA-like C-terminal region J163_02934 PF13116 Protein of unknown function J163_02935 PF00575 S1 RNA binding domain J163_02935 PF10150 Ribonuclease E/G family J163_02936 PF02545 Maf-like protein J163_02937 PF04402 Protein of unknown function (DUF541) J163_02940 PF02590 Predicted SPOUT methyltransferase J163_02943 PF01467 Cytidylyltransferase-like J163_02946 PF13603 Leucyl-tRNA synthetase, Domain 2 J163_02946 PF00133 tRNA synthetases class I (I, L, M and V) J163_02946 PF08264 Anticodon-binding domain of tRNA J163_02948 PF00085 Thioredoxin J163_02953 PF04070 Domain of unknown function (DUF378) J163_02954 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J163_02956 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_02956 PF03466 LysR substrate binding domain J163_02961 PF00005 ABC transporter J163_02961 PF00664 ABC transporter transmembrane region J163_02964 PF00873 AcrB/AcrD/AcrF family J163_02967 PF02321 Outer membrane efflux protein J163_02968 PF00486 Transcriptional regulatory protein, C terminal J163_02968 PF00072 Response regulator receiver domain J163_02969 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_02969 PF00512 His Kinase A (phospho-acceptor) domain J163_02969 PF00672 HAMP domain J163_02970 PF00999 Sodium/hydrogen exchanger family J163_02971 PF00144 Beta-lactamase J163_02972 PF03737 Aldolase/RraA J163_02975 PF00072 Response regulator receiver domain J163_02975 PF00990 Diguanylate cyclase, GGDEF domain J163_02976 PF00849 RNA pseudouridylate synthase J163_02976 PF01479 S4 domain J163_02977 PF00563 EAL domain J163_02977 PF00990 Diguanylate cyclase, GGDEF domain J163_02977 PF08448 PAS fold J163_02978 PF03880 DbpA RNA binding domain J163_02978 PF00271 Helicase conserved C-terminal domain J163_02978 PF00270 DEAD/DEAH box helicase J163_02988 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J163_02988 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J163_02990 PF00654 Voltage gated chloride channel J163_02991 PF08240 Alcohol dehydrogenase GroES-like domain J163_02991 PF00107 Zinc-binding dehydrogenase J163_02994 PF07715 TonB-dependent Receptor Plug Domain J163_02994 PF00593 TonB dependent receptor J163_02996 PF00082 Subtilase family J163_02996 PF01483 Proprotein convertase P-domain J163_02999 PF00082 Subtilase family J163_02999 PF01483 Proprotein convertase P-domain J163_03001 PF00248 Aldo/keto reductase family J163_03002 PF07690 Major Facilitator Superfamily J163_03003 PF03466 LysR substrate binding domain J163_03003 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_03005 PF06719 AraC-type transcriptional regulator N-terminus J163_03005 PF12833 Helix-turn-helix domain J163_03007 PF00440 Bacterial regulatory proteins, tetR family J163_03007 PF16859 Tetracyclin repressor-like, C-terminal domain J163_03008 PF02321 Outer membrane efflux protein J163_03009 PF00873 AcrB/AcrD/AcrF family J163_03010 PF00529 HlyD membrane-fusion protein of T1SS J163_03010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J163_03012 PF01475 Ferric uptake regulator family J163_03013 PF00749 tRNA synthetases class I (E and Q), catalytic domain J163_03018 PF06123 Inner membrane protein CreD J163_03020 PF00672 HAMP domain J163_03020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_03020 PF00512 His Kinase A (phospho-acceptor) domain J163_03021 PF00072 Response regulator receiver domain J163_03021 PF00486 Transcriptional regulatory protein, C terminal J163_03022 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ J163_03024 PF17757 UvrB interaction domain J163_03024 PF00271 Helicase conserved C-terminal domain J163_03024 PF02559 CarD-like/TRCF domain J163_03024 PF03461 TRCF domain J163_03024 PF00270 DEAD/DEAH box helicase J163_03031 PF01584 CheW-like domain J163_03031 PF09078 CheY binding J163_03031 PF02895 Signal transducing histidine kinase, homodimeric domain J163_03031 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_03031 PF01627 Hpt domain J163_03032 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_03032 PF00672 HAMP domain J163_03032 PF02203 Tar ligand binding domain homologue J163_03033 PF01584 CheW-like domain J163_03034 PF00563 EAL domain J163_03034 PF00990 Diguanylate cyclase, GGDEF domain J163_03034 PF13426 PAS domain J163_03035 PF01739 CheR methyltransferase, SAM binding domain J163_03035 PF03705 CheR methyltransferase, all-alpha domain J163_03036 PF00072 Response regulator receiver domain J163_03036 PF01339 CheB methylesterase J163_03037 PF13091 PLD-like domain J163_03038 PF05649 Peptidase family M13 J163_03038 PF01431 Peptidase family M13 J163_03040 PF00300 Histidine phosphatase superfamily (branch 1) J163_03041 PF04493 Endonuclease V J163_03043 PF05726 Pirin C-terminal cupin domain J163_03043 PF02678 Pirin J163_03046 PF02678 Pirin J163_03046 PF05726 Pirin C-terminal cupin domain J163_03047 PF13722 5TM C-terminal transporter carbon starvation CstA J163_03047 PF02554 Carbon starvation protein CstA J163_03048 PF04328 Selenoprotein, putative J163_03057 PF01527 Transposase J163_03059 PF02625 XdhC and CoxI family J163_03059 PF13478 XdhC Rossmann domain J163_03060 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J163_03060 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J163_03061 PF03450 CO dehydrogenase flavoprotein C-terminal domain J163_03061 PF00941 FAD binding domain in molybdopterin dehydrogenase J163_03062 PF10518 TAT (twin-arginine translocation) pathway signal sequence J163_03062 PF01799 [2Fe-2S] binding domain J163_03062 PF00111 2Fe-2S iron-sulfur cluster binding domain J163_03063 PF00698 Acyl transferase domain J163_03063 PF08990 Erythronolide synthase docking J163_03063 PF08659 KR domain J163_03063 PF09277 Erythronolide synthase, docking J163_03063 PF08240 Alcohol dehydrogenase GroES-like domain J163_03063 PF16197 Ketoacyl-synthetase C-terminal extension J163_03063 PF14765 Polyketide synthase dehydratase J163_03063 PF00550 Phosphopantetheine attachment site J163_03063 PF00109 Beta-ketoacyl synthase, N-terminal domain J163_03063 PF02801 Beta-ketoacyl synthase, C-terminal domain J163_03064 PF01590 GAF domain J163_03064 PF00360 Phytochrome region J163_03064 PF00563 EAL domain J163_03064 PF00990 Diguanylate cyclase, GGDEF domain J163_03065 PF00436 Single-strand binding protein family J163_03066 PF00348 Polyprenyl synthetase J163_03068 PF08245 Mur ligase middle domain J163_03068 PF02875 Mur ligase family, glutamate ligase domain J163_03071 PF00696 Amino acid kinase family J163_03071 PF01842 ACT domain J163_03072 PF02567 Phenazine biosynthesis-like protein J163_03073 PF02567 Phenazine biosynthesis-like protein J163_03075 PF02566 OsmC-like protein J163_03076 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J163_03076 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J163_03077 PF03652 Holliday junction resolvase J163_03078 PF02622 Uncharacterized ACR, COG1678 J163_03079 PF13673 Acetyltransferase (GNAT) domain J163_03079 PF13302 Acetyltransferase (GNAT) domain J163_03079 PF03352 Methyladenine glycosylase J163_03079 PF00958 GMP synthase C terminal domain J163_03079 PF00117 Glutamine amidotransferase class-I J163_03082 PF03211 Pectate lyase J163_03083 PF00437 Type II/IV secretion system protein J163_03084 PF00437 Type II/IV secretion system protein J163_03085 PF01168 Alanine racemase, N-terminal domain J163_03086 PF03807 NADP oxidoreductase coenzyme F420-dependent J163_03086 PF14748 Pyrroline-5-carboxylate reductase dimerisation J163_03088 PF01551 Peptidase family M23 J163_03092 PF01965 DJ-1/PfpI family J163_03094 PF02082 Transcriptional regulator J163_03095 PF01458 Uncharacterized protein family (UPF0051) J163_03096 PF00005 ABC transporter J163_03097 PF01458 Uncharacterized protein family (UPF0051) J163_03098 PF00266 Aminotransferase class-V J163_03100 PF00355 Rieske [2Fe-2S] domain J163_03101 PF00593 TonB dependent receptor J163_03101 PF07715 TonB-dependent Receptor Plug Domain J163_03102 PF13640 2OG-Fe(II) oxygenase superfamily J163_03102 PF18331 PKHD-type hydroxylase C-terminal domain J163_03107 PF02424 ApbE family J163_03108 PF00175 Oxidoreductase NAD-binding domain J163_03108 PF00258 Flavodoxin J163_03108 PF00667 FAD binding domain J163_03112 PF01546 Peptidase family M20/M25/M40 J163_03112 PF07687 Peptidase dimerisation domain J163_03114 PF01636 Phosphotransferase enzyme family J163_03115 PF00483 Nucleotidyl transferase J163_03116 PF00308 Bacterial dnaA protein J163_03117 PF01594 AI-2E family transporter J163_03119 PF02769 AIR synthase related protein, C-terminal domain J163_03119 PF00586 AIR synthase related protein, N-terminal domain J163_03121 PF00551 Formyl transferase J163_03125 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J163_03126 PF01722 BolA-like protein J163_03127 PF00571 CBS domain J163_03127 PF01380 SIS domain J163_03130 PF03968 OstA-like protein J163_03131 PF00005 ABC transporter J163_03132 PF04552 Sigma-54, DNA binding domain J163_03132 PF00309 Sigma-54 factor, Activator interacting domain (AID) J163_03132 PF04963 Sigma-54 factor, core binding domain J163_03133 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J163_03134 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J163_03135 PF07475 HPr Serine kinase C-terminal domain J163_03135 PF02603 HPr Serine kinase N terminus J163_03136 PF03668 P-loop ATPase protein family J163_03138 PF00381 PTS HPr component phosphorylation site J163_03139 PF05524 PEP-utilising enzyme, N-terminal J163_03139 PF02896 PEP-utilising enzyme, TIM barrel domain J163_03139 PF00391 PEP-utilising enzyme, mobile domain J163_03140 PF03448 MgtE intracellular N domain J163_03140 PF01769 Divalent cation transporter J163_03140 PF00571 CBS domain J163_03141 PF00756 Putative esterase J163_03142 PF02322 Cytochrome bd terminal oxidase subunit II J163_03143 PF01654 Cytochrome bd terminal oxidase subunit I J163_03145 PF00324 Amino acid permease J163_03146 PF00544 Pectate lyase J163_03147 PF00561 alpha/beta hydrolase fold J163_03148 PF00196 Bacterial regulatory proteins, luxR family J163_03149 PF00324 Amino acid permease J163_03154 PF12706 Beta-lactamase superfamily domain J163_03155 PF04820 Tryptophan halogenase J163_03160 PF09278 MerR, DNA binding J163_03160 PF00376 MerR family regulatory protein J163_03161 PF07690 Major Facilitator Superfamily J163_03163 PF03738 Glutathionylspermidine synthase preATP-grasp J163_03168 PF04012 PspA/IM30 family J163_03170 PF01243 Pyridoxamine 5'-phosphate oxidase J163_03170 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J163_03171 PF01202 Shikimate kinase J163_03172 PF01761 3-dehydroquinate synthase J163_03174 PF01208 Uroporphyrinogen decarboxylase (URO-D) J163_03187 PF00158 Sigma-54 interaction domain J163_03187 PF01590 GAF domain J163_03187 PF02954 Bacterial regulatory protein, Fis family J163_03188 PF07690 Major Facilitator Superfamily J163_03189 PF00672 HAMP domain J163_03189 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_03189 PF00512 His Kinase A (phospho-acceptor) domain J163_03189 PF01627 Hpt domain J163_03189 PF00072 Response regulator receiver domain J163_03189 PF17149 Periplasmic sensor domain found in signal transduction proteins J163_03190 PF17149 Periplasmic sensor domain found in signal transduction proteins J163_03190 PF00672 HAMP domain J163_03190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_03190 PF00512 His Kinase A (phospho-acceptor) domain J163_03190 PF01627 Hpt domain J163_03190 PF00072 Response regulator receiver domain J163_03192 PF01627 Hpt domain J163_03192 PF00072 Response regulator receiver domain J163_03192 PF00512 His Kinase A (phospho-acceptor) domain J163_03192 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_03193 PF04264 YceI-like domain J163_03197 PF03313 Serine dehydratase alpha chain J163_03197 PF03315 Serine dehydratase beta chain J163_03198 PF12697 Alpha/beta hydrolase family J163_03199 PF00742 Homoserine dehydrogenase J163_03199 PF03447 Homoserine dehydrogenase, NAD binding domain J163_03199 PF00696 Amino acid kinase family J163_03200 PF01053 Cys/Met metabolism PLP-dependent enzyme J163_03201 PF00561 alpha/beta hydrolase fold J163_03203 PF01551 Peptidase family M23 J163_03203 PF01476 LysM domain J163_03203 PF08525 Opacity-associated protein A N-terminal motif J163_03204 PF16658 Class II release factor RF3, C-terminal domain J163_03204 PF00009 Elongation factor Tu GTP binding domain J163_03205 PF03006 Haemolysin-III related J163_03206 PF05170 AsmA family J163_03207 PF00571 CBS domain J163_03207 PF00478 IMP dehydrogenase / GMP reductase domain J163_03208 PF00535 Glycosyl transferase family 2 J163_03209 PF00912 Transglycosylase J163_03210 PF01430 Hsp33 protein J163_03212 PF07715 TonB-dependent Receptor Plug Domain J163_03212 PF00593 TonB dependent receptor J163_03214 PF00440 Bacterial regulatory proteins, tetR family J163_03215 PF00561 alpha/beta hydrolase fold J163_03216 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J163_03216 PF09317 Domain of unknown function (DUF1974) J163_03216 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J163_03221 PF01597 Glycine cleavage H-protein J163_03222 PF01571 Aminomethyltransferase folate-binding domain J163_03222 PF08669 Glycine cleavage T-protein C-terminal barrel domain J163_03224 PF01145 SPFH domain / Band 7 family J163_03224 PF16200 C-terminal region of band_7 J163_03225 PF02694 Uncharacterised BCR, YnfA/UPF0060 family J163_03226 PF03819 MazG nucleotide pyrophosphohydrolase domain J163_03227 PF00459 Inositol monophosphatase family J163_03228 PF00293 NUDIX domain J163_03229 PF00202 Aminotransferase class-III J163_03230 PF04452 RNA methyltransferase J163_03231 PF02685 Glucokinase J163_03234 PF00704 Glycosyl hydrolases family 18 J163_03234 PF01476 LysM domain J163_03235 PF00728 Glycosyl hydrolase family 20, catalytic domain J163_03235 PF07691 PA14 domain J163_03235 PF02838 Glycosyl hydrolase family 20, domain 2 J163_03237 PF07691 PA14 domain J163_03237 PF01915 Glycosyl hydrolase family 3 C-terminal domain J163_03237 PF00933 Glycosyl hydrolase family 3 N terminal domain J163_03237 PF14310 Fibronectin type III-like domain J163_03239 PF01301 Glycosyl hydrolases family 35 J163_03240 PF13520 Amino acid permease J163_03242 PF11975 Family 4 glycosyl hydrolase C-terminal domain J163_03242 PF02056 Family 4 glycosyl hydrolase J163_03244 PF17678 Glycosyl hydrolase family 92 N-terminal domain J163_03244 PF07971 Glycosyl hydrolase family 92 J163_03245 PF01301 Glycosyl hydrolases family 35 J163_03251 PF03932 CutC family J163_03252 PF01112 Asparaginase J163_03253 PF13302 Acetyltransferase (GNAT) domain J163_03256 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_03256 PF00072 Response regulator receiver domain J163_03256 PF01584 CheW-like domain J163_03256 PF01627 Hpt domain J163_03257 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J163_03257 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_03259 PF00072 Response regulator receiver domain J163_03260 PF00072 Response regulator receiver domain J163_03261 PF02951 Prokaryotic glutathione synthetase, N-terminal domain J163_03261 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain J163_03263 PF03747 ADP-ribosylglycohydrolase J163_03264 PF00814 Glycoprotease family J163_03265 PF13307 Helicase C-terminal domain J163_03265 PF04851 Type III restriction enzyme, res subunit J163_03267 PF00905 Penicillin binding protein transpeptidase domain J163_03267 PF14814 Bifunctional transglycosylase second domain J163_03267 PF00912 Transglycosylase J163_03268 PF00535 Glycosyl transferase family 2 J163_03270 PF13291 ACT domain J163_03270 PF02824 TGS domain J163_03270 PF04607 Region found in RelA / SpoT proteins J163_03271 PF12706 Beta-lactamase superfamily domain J163_03272 PF03070 TENA/THI-4/PQQC family J163_03273 PF05402 Coenzyme PQQ synthesis protein D (PqqD) J163_03274 PF04055 Radical SAM superfamily J163_03274 PF13186 Iron-sulfur cluster-binding domain J163_03277 PF02685 Glucokinase J163_03279 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J163_03279 PF00270 DEAD/DEAH box helicase J163_03279 PF11898 Domain of unknown function (DUF3418) J163_03279 PF04408 Helicase associated domain (HA2) J163_03279 PF00271 Helicase conserved C-terminal domain J163_03280 PF00210 Ferritin-like domain J163_03281 PF00270 DEAD/DEAH box helicase J163_03281 PF00570 HRDC domain J163_03281 PF16124 RecQ zinc-binding J163_03281 PF00271 Helicase conserved C-terminal domain J163_03281 PF09382 RQC domain J163_03288 PF00672 HAMP domain J163_03288 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_03288 PF02203 Tar ligand binding domain homologue J163_03292 PF07536 HWE histidine kinase J163_03292 PF13581 Histidine kinase-like ATPase domain J163_03292 PF13426 PAS domain J163_03293 PF06508 Queuosine biosynthesis protein QueC J163_03295 PF04055 Radical SAM superfamily J163_03297 PF00691 OmpA family J163_03298 PF04052 TolB amino-terminal domain J163_03298 PF07676 WD40-like Beta Propeller Repeat J163_03300 PF02472 Biopolymer transport protein ExbD/TolR J163_03301 PF01618 MotA/TolQ/ExbB proton channel family J163_03302 PF03061 Thioesterase superfamily J163_03303 PF05496 Holliday junction DNA helicase RuvB P-loop domain J163_03303 PF17864 RuvB AAA lid domain J163_03303 PF05491 RuvB C-terminal winged helix domain J163_03305 PF02705 K+ potassium transporter J163_03306 PF07499 RuvA, C-terminal domain J163_03306 PF01330 RuvA N terminal domain J163_03307 PF02075 Crossover junction endodeoxyribonuclease RuvC J163_03308 PF01709 Transcriptional regulator J163_03311 PF02938 GAD domain J163_03311 PF00152 tRNA synthetases class II (D, K and N) J163_03311 PF01336 OB-fold nucleic acid binding domain J163_03314 PF07690 Major Facilitator Superfamily J163_03317 PF04185 Phosphoesterase family J163_03317 PF05506 Domain of unknown function (DUF756) J163_03320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_03320 PF03466 LysR substrate binding domain J163_03322 PF00005 ABC transporter J163_03322 PF12848 ABC transporter J163_03323 PF00593 TonB dependent receptor J163_03323 PF07715 TonB-dependent Receptor Plug Domain J163_03325 PF00593 TonB dependent receptor J163_03325 PF07715 TonB-dependent Receptor Plug Domain J163_03326 PF07715 TonB-dependent Receptor Plug Domain J163_03326 PF00593 TonB dependent receptor J163_03327 PF00067 Cytochrome P450 J163_03328 PF02254 TrkA-N domain J163_03328 PF00999 Sodium/hydrogen exchanger family J163_03333 PF07660 Secretin and TonB N terminus short domain J163_03333 PF00593 TonB dependent receptor J163_03333 PF07715 TonB-dependent Receptor Plug Domain J163_03335 PF04183 IucA / IucC family J163_03335 PF06276 Ferric iron reductase FhuF-like transporter J163_03336 PF07690 Major Facilitator Superfamily J163_03338 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J163_03338 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J163_03341 PF02654 Cobalamin-5-phosphate synthase J163_03343 PF02277 Phosphoribosyltransferase J163_03344 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase J163_03345 PF07685 CobB/CobQ-like glutamine amidotransferase domain J163_03345 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J163_03346 PF00155 Aminotransferase class I and II J163_03348 PF17113 Regulatory signalling modulator protein AmpE J163_03348 PF03186 CobD/Cbib protein J163_03349 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP J163_03349 PF12557 Cob(I)alamin adenosyltransferase N terminal J163_03352 PF07715 TonB-dependent Receptor Plug Domain J163_03352 PF00593 TonB dependent receptor J163_03354 PF10431 C-terminal, D2-small domain, of ClpB protein J163_03354 PF00004 ATPase family associated with various cellular activities (AAA) J163_03354 PF02861 Clp amino terminal domain, pathogenicity island component J163_03354 PF17871 AAA lid domain J163_03354 PF07724 AAA domain (Cdc48 subfamily) J163_03355 PF00005 ABC transporter J163_03356 PF00528 Binding-protein-dependent transport system inner membrane component J163_03357 PF09084 NMT1/THI5 like J163_03358 PF00248 Aldo/keto reductase family J163_03360 PF07715 TonB-dependent Receptor Plug Domain J163_03360 PF00593 TonB dependent receptor J163_03361 PF01541 GIY-YIG catalytic domain J163_03368 PF00593 TonB dependent receptor J163_03368 PF07715 TonB-dependent Receptor Plug Domain J163_03369 PF02358 Trehalose-phosphatase J163_03370 PF00723 Glycosyl hydrolases family 15 J163_03371 PF00982 Glycosyltransferase family 20 J163_03372 PF01011 PQQ enzyme repeat J163_03373 PF00672 HAMP domain J163_03373 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_03373 PF02203 Tar ligand binding domain homologue J163_03374 PF04134 Protein of unknown function, DUF393 J163_03377 PF00849 RNA pseudouridylate synthase J163_03378 PF13525 Outer membrane lipoprotein J163_03380 PF00795 Carbon-nitrogen hydrolase J163_03380 PF02540 NAD synthase J163_03382 PF01527 Transposase J163_03383 PF00665 Integrase core domain J163_03383 PF13276 HTH-like domain J163_03383 PF13333 Integrase core domain J163_03386 PF13406 Transglycosylase SLT domain J163_03387 PF01526 Tn3 transposase DDE domain J163_03387 PF13700 Domain of unknown function (DUF4158) J163_03391 PF01129 NAD:arginine ADP-ribosyltransferase J163_03396 PF00549 CoA-ligase J163_03396 PF02629 CoA binding domain J163_03397 PF00549 CoA-ligase J163_03397 PF08442 ATP-grasp domain J163_03398 PF00512 His Kinase A (phospho-acceptor) domain J163_03398 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_03399 PF02954 Bacterial regulatory protein, Fis family J163_03399 PF00072 Response regulator receiver domain J163_03399 PF00158 Sigma-54 interaction domain J163_03401 PF00437 Type II/IV secretion system protein J163_03401 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J163_03402 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J163_03402 PF00437 Type II/IV secretion system protein J163_03403 PF00437 Type II/IV secretion system protein J163_03403 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J163_03404 PF07963 Prokaryotic N-terminal methylation motif J163_03404 PF00114 Pilin (bacterial filament) J163_03405 PF00114 Pilin (bacterial filament) J163_03405 PF07963 Prokaryotic N-terminal methylation motif J163_03406 PF00482 Type II secretion system (T2SS), protein F J163_03407 PF06750 Bacterial Peptidase A24 N-terminal domain J163_03407 PF01478 Type IV leader peptidase family J163_03408 PF01121 Dephospho-CoA kinase J163_03412 PF01527 Transposase J163_03413 PF13276 HTH-like domain J163_03413 PF00665 Integrase core domain J163_03413 PF13333 Integrase core domain J163_03414 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_03414 PF16736 Single Cache-like J163_03414 PF00512 His Kinase A (phospho-acceptor) domain J163_03414 PF00989 PAS fold J163_03415 PF00486 Transcriptional regulatory protein, C terminal J163_03415 PF00072 Response regulator receiver domain J163_03417 PF08443 RimK-like ATP-grasp domain J163_03417 PF18030 RimK PreATP-grasp domain J163_03418 PF00128 Alpha amylase, catalytic domain J163_03418 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J163_03431 PF04002 RadC-like JAB domain J163_03435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_03435 PF00072 Response regulator receiver domain J163_03435 PF13426 PAS domain J163_03436 PF13426 PAS domain J163_03436 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_03436 PF00072 Response regulator receiver domain J163_03442 PF01527 Transposase J163_03451 PF00072 Response regulator receiver domain J163_03451 PF08448 PAS fold J163_03451 PF13188 PAS domain J163_03451 PF00512 His Kinase A (phospho-acceptor) domain J163_03451 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_03455 PF13676 TIR domain J163_03458 PF03797 Autotransporter beta-domain J163_03458 PF00657 GDSL-like Lipase/Acylhydrolase J163_03460 PF05690 Thiazole biosynthesis protein ThiG J163_03461 PF02390 Putative methyltransferase J163_03462 PF02080 TrkA-C domain J163_03462 PF03600 Citrate transporter J163_03465 PF01557 Fumarylacetoacetate (FAA) hydrolase family J163_03466 PF01741 Large-conductance mechanosensitive channel, MscL J163_03468 PF00356 Bacterial regulatory proteins, lacI family J163_03470 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain J163_03470 PF02837 Glycosyl hydrolases family 2, sugar binding domain J163_03470 PF00703 Glycosyl hydrolases family 2 J163_03471 PF10566 Glycoside hydrolase 97 J163_03471 PF14508 Glycosyl-hydrolase 97 N-terminal J163_03471 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation J163_03473 PF00135 Carboxylesterase family J163_03474 PF08032 RNA 2'-O ribose methyltransferase substrate binding J163_03474 PF00588 SpoU rRNA Methylase family J163_03476 PF01433 Peptidase family M1 domain J163_03476 PF11838 ERAP1-like C-terminal domain J163_03478 PF00665 Integrase core domain J163_03478 PF13333 Integrase core domain J163_03478 PF13276 HTH-like domain J163_03479 PF01527 Transposase J163_03485 PF00873 AcrB/AcrD/AcrF family J163_03486 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J163_03486 PF00529 HlyD membrane-fusion protein of T1SS J163_03487 PF00009 Elongation factor Tu GTP binding domain J163_03488 PF01507 Phosphoadenosine phosphosulfate reductase family J163_03489 PF00667 FAD binding domain J163_03489 PF00258 Flavodoxin J163_03489 PF00175 Oxidoreductase NAD-binding domain J163_03490 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J163_03490 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J163_03491 PF01507 Phosphoadenosine phosphosulfate reductase family J163_03495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_03495 PF00512 His Kinase A (phospho-acceptor) domain J163_03495 PF01627 Hpt domain J163_03495 PF00072 Response regulator receiver domain J163_03497 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_03497 PF03466 LysR substrate binding domain J163_03498 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J163_03498 PF14824 Sirohaem biosynthesis protein central J163_03498 PF10414 Sirohaem synthase dimerisation region J163_03499 PF00291 Pyridoxal-phosphate dependent enzyme J163_03501 PF01661 Macro domain J163_03502 PF00274 Fructose-bisphosphate aldolase class-I J163_03503 PF02887 Pyruvate kinase, alpha/beta domain J163_03503 PF00224 Pyruvate kinase, barrel domain J163_03505 PF00162 Phosphoglycerate kinase J163_03510 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J163_03510 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J163_03512 PF03922 OmpW family J163_03513 PF03922 OmpW family J163_03515 PF00753 Metallo-beta-lactamase superfamily J163_03515 PF04273 Putative phosphatase (DUF442) J163_03517 PF00528 Binding-protein-dependent transport system inner membrane component J163_03518 PF03459 TOBE domain J163_03518 PF00005 ABC transporter J163_03525 PF01476 LysM domain J163_03525 PF03734 L,D-transpeptidase catalytic domain J163_03526 PF01551 Peptidase family M23 J163_03526 PF04225 Opacity-associated protein A LysM-like domain J163_03528 PF07715 TonB-dependent Receptor Plug Domain J163_03528 PF00593 TonB dependent receptor J163_03529 PF12146 Serine aminopeptidase, S33 J163_03530 PF00456 Transketolase, thiamine diphosphate binding domain J163_03530 PF02779 Transketolase, pyrimidine binding domain J163_03530 PF02780 Transketolase, C-terminal domain J163_03531 PF00375 Sodium:dicarboxylate symporter family J163_03533 PF07584 Aerotolerance regulator N-terminal J163_03533 PF00092 von Willebrand factor type A domain J163_03537 PF07726 ATPase family associated with various cellular activities (AAA) J163_03537 PF17863 AAA lid domain J163_03539 PF03958 Bacterial type II/III secretion system short domain J163_03539 PF00263 Bacterial type II and III secretion system protein J163_03539 PF11741 AMIN domain J163_03539 PF07660 Secretin and TonB N terminus short domain J163_03544 PF00905 Penicillin binding protein transpeptidase domain J163_03544 PF00912 Transglycosylase J163_03544 PF17092 Penicillin-binding protein OB-like domain J163_03547 PF00285 Citrate synthase, C-terminal domain J163_03548 PF01197 Ribosomal protein L31 J163_03549 PF01156 Inosine-uridine preferring nucleoside hydrolase J163_03550 PF00271 Helicase conserved C-terminal domain J163_03550 PF00270 DEAD/DEAH box helicase J163_03550 PF17191 RecG wedge domain J163_03551 PF01042 Endoribonuclease L-PSP J163_03552 PF02824 TGS domain J163_03552 PF04607 Region found in RelA / SpoT proteins J163_03552 PF13291 ACT domain J163_03553 PF01192 RNA polymerase Rpb6 J163_03554 PF00625 Guanylate kinase J163_03555 PF03755 YicC-like family, N-terminal region J163_03555 PF08340 Domain of unknown function (DUF1732) J163_03556 PF03725 3' exoribonuclease family, domain 2 J163_03556 PF01138 3' exoribonuclease family, domain 1 J163_03558 PF01725 Ham1 family J163_03559 PF06969 HemN C-terminal domain J163_03559 PF04055 Radical SAM superfamily J163_03562 PF00557 Metallopeptidase family M24 J163_03564 PF05195 Aminopeptidase P, N-terminal domain J163_03564 PF00557 Metallopeptidase family M24 J163_03565 PF00557 Metallopeptidase family M24 J163_03565 PF05195 Aminopeptidase P, N-terminal domain J163_03566 PF03695 Uncharacterised protein family (UPF0149) J163_03568 PF05164 Cell division protein ZapA J163_03570 PF01812 5-formyltetrahydrofolate cyclo-ligase family J163_03572 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J163_03574 PF13369 Transglutaminase-like superfamily J163_03575 PF00301 Rubredoxin J163_03576 PF02581 Thiamine monophosphate synthase J163_03579 PF00202 Aminotransferase class-III J163_03580 PF17874 MalT-like TPR region J163_03580 PF00196 Bacterial regulatory proteins, luxR family J163_03581 PF00127 Copper binding proteins, plastocyanin/azurin family J163_03582 PF00155 Aminotransferase class I and II J163_03584 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J163_03584 PF00034 Cytochrome c J163_03585 PF01593 Flavin containing amine oxidoreductase J163_03588 PF00202 Aminotransferase class-III J163_03589 PF00027 Cyclic nucleotide-binding domain J163_03589 PF00520 Ion transport protein J163_03592 PF01569 PAP2 superfamily J163_03593 PF01062 Bestrophin, RFP-TM, chloride channel J163_03595 PF01225 Mur ligase family, catalytic domain J163_03595 PF02875 Mur ligase family, glutamate ligase domain J163_03595 PF08245 Mur ligase middle domain J163_03597 PF00365 Phosphofructokinase J163_03599 PF03030 Inorganic H+ pyrophosphatase J163_03601 PF00719 Inorganic pyrophosphatase J163_03603 PF07715 TonB-dependent Receptor Plug Domain J163_03603 PF00593 TonB dependent receptor J163_03604 PF12833 Helix-turn-helix domain J163_03605 PF00486 Transcriptional regulatory protein, C terminal J163_03605 PF18500 CadC C-terminal domain 1 J163_03606 PF01964 Radical SAM ThiC family J163_03606 PF13667 ThiC-associated domain J163_03608 PF00593 TonB dependent receptor J163_03608 PF07715 TonB-dependent Receptor Plug Domain J163_03609 PF00672 HAMP domain J163_03609 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_03609 PF02203 Tar ligand binding domain homologue J163_03611 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J163_03611 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J163_03612 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J163_03612 PF00205 Thiamine pyrophosphate enzyme, central domain J163_03612 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J163_03614 PF00291 Pyridoxal-phosphate dependent enzyme J163_03615 PF00682 HMGL-like J163_03615 PF08502 LeuA allosteric (dimerisation) domain J163_03616 PF00180 Isocitrate/isopropylmalate dehydrogenase J163_03617 PF00694 Aconitase C-terminal domain J163_03618 PF00330 Aconitase family (aconitate hydratase) J163_03619 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_03620 PF00990 Diguanylate cyclase, GGDEF domain J163_03620 PF17151 Periplasmic sensor domain J163_03623 PF02321 Outer membrane efflux protein J163_03624 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) J163_03625 PF03279 Bacterial lipid A biosynthesis acyltransferase J163_03630 PF01515 Phosphate acetyl/butaryl transferase J163_03630 PF03949 Malic enzyme, NAD binding domain J163_03630 PF00390 Malic enzyme, N-terminal domain J163_03631 PF00375 Sodium:dicarboxylate symporter family J163_03633 PF02743 Cache domain J163_03633 PF00512 His Kinase A (phospho-acceptor) domain J163_03633 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_03634 PF07690 Major Facilitator Superfamily J163_03636 PF03466 LysR substrate binding domain J163_03636 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_03637 PF00248 Aldo/keto reductase family J163_03641 PF00196 Bacterial regulatory proteins, luxR family J163_03641 PF00072 Response regulator receiver domain J163_03643 PF00512 His Kinase A (phospho-acceptor) domain J163_03643 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_03643 PF08521 Two-component sensor kinase N-terminal J163_03644 PF00072 Response regulator receiver domain J163_03644 PF00486 Transcriptional regulatory protein, C terminal J163_03646 PF03600 Citrate transporter J163_03648 PF00106 short chain dehydrogenase J163_03649 PF00356 Bacterial regulatory proteins, lacI family J163_03652 PF00128 Alpha amylase, catalytic domain J163_03655 PF03193 RsgA GTPase J163_03659 PF00593 TonB dependent receptor J163_03659 PF07715 TonB-dependent Receptor Plug Domain J163_03660 PF01522 Polysaccharide deacetylase J163_03661 PF00462 Glutaredoxin J163_03664 PF01527 Transposase J163_03669 PF02645 Uncharacterised protein, DegV family COG1307 J163_03670 PF01327 Polypeptide deformylase J163_03671 PF03960 ArsC family J163_03674 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) J163_03675 PF01270 Glycosyl hydrolases family 8 J163_03676 PF03170 Bacterial cellulose synthase subunit J163_03677 PF07238 PilZ domain J163_03677 PF00535 Glycosyl transferase family 2 J163_03677 PF03552 Cellulose synthase J163_03680 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family J163_03680 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain J163_03687 PF00593 TonB dependent receptor J163_03687 PF07715 TonB-dependent Receptor Plug Domain J163_03689 PF00392 Bacterial regulatory proteins, gntR family J163_03689 PF07702 UTRA domain J163_03691 PF03958 Bacterial type II/III secretion system short domain J163_03691 PF00263 Bacterial type II and III secretion system protein J163_03693 PF10741 Type II secretion system (T2SS), protein M subtype b J163_03694 PF05137 Fimbrial assembly protein (PilN) J163_03695 PF03934 Type II secretion system (T2SS), protein K J163_03697 PF07963 Prokaryotic N-terminal methylation motif J163_03698 PF12019 Type II transport protein GspH J163_03699 PF08334 Type II secretion system (T2SS), protein G J163_03700 PF00482 Type II secretion system (T2SS), protein F J163_03701 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J163_03701 PF00437 Type II/IV secretion system protein J163_03702 PF00082 Subtilase family J163_03702 PF04151 Bacterial pre-peptidase C-terminal domain J163_03703 PF05662 Coiled stalk of trimeric autotransporter adhesin J163_03703 PF05658 Head domain of trimeric autotransporter adhesin J163_03703 PF03895 YadA-like membrane anchor domain J163_03703 PF13018 Extended Signal Peptide of Type V secretion system J163_03704 PF00082 Subtilase family J163_03704 PF04151 Bacterial pre-peptidase C-terminal domain J163_03705 PF13018 Extended Signal Peptide of Type V secretion system J163_03705 PF03895 YadA-like membrane anchor domain J163_03705 PF05658 Head domain of trimeric autotransporter adhesin J163_03705 PF05662 Coiled stalk of trimeric autotransporter adhesin J163_03706 PF02769 AIR synthase related protein, C-terminal domain J163_03706 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal J163_03706 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J163_03707 PF10411 Disulfide bond isomerase protein N-terminus J163_03707 PF13098 Thioredoxin-like domain J163_03708 PF00589 Phage integrase family J163_03708 PF02899 Phage integrase, N-terminal SAM-like domain J163_03711 PF03739 Lipopolysaccharide export system permease LptF/LptG J163_03713 PF02789 Cytosol aminopeptidase family, N-terminal domain J163_03713 PF00883 Cytosol aminopeptidase family, catalytic domain J163_03716 PF10458 Valyl tRNA synthetase tRNA binding arm J163_03716 PF08264 Anticodon-binding domain of tRNA J163_03716 PF00133 tRNA synthetases class I (I, L, M and V) J163_03717 PF07715 TonB-dependent Receptor Plug Domain J163_03717 PF00593 TonB dependent receptor J163_03718 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J163_03718 PF01464 Transglycosylase SLT domain J163_03719 PF00544 Pectate lyase J163_03722 PF01066 CDP-alcohol phosphatidyltransferase J163_03724 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J163_03724 PF04073 Aminoacyl-tRNA editing domain J163_03724 PF03129 Anticodon binding domain J163_03725 PF00816 H-NS histone family J163_03727 PF02405 Permease MlaE J163_03728 PF00005 ABC transporter J163_03729 PF02470 MlaD protein J163_03729 PF03886 ABC-type transport auxiliary lipoprotein component J163_03733 PF14307 Glycosyltransferase WbsX J163_03733 PF05045 Rhamnan synthesis protein F J163_03734 PF01144 Coenzyme A transferase J163_03735 PF01144 Coenzyme A transferase J163_03736 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J163_03736 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J163_03736 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J163_03736 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J163_03737 PF00483 Nucleotidyl transferase J163_03737 PF01050 Mannose-6-phosphate isomerase J163_03738 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J163_03738 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J163_03738 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J163_03739 PF04321 RmlD substrate binding domain J163_03740 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase J163_03741 PF00483 Nucleotidyl transferase J163_03742 PF16363 GDP-mannose 4,6 dehydratase J163_03743 PF01012 Electron transfer flavoprotein domain J163_03744 PF00766 Electron transfer flavoprotein FAD-binding domain J163_03744 PF01012 Electron transfer flavoprotein domain J163_03746 PF01040 UbiA prenyltransferase family J163_03747 PF01565 FAD binding domain J163_03747 PF04030 D-arabinono-1,4-lactone oxidase J163_03748 PF00106 short chain dehydrogenase J163_03750 PF01370 NAD dependent epimerase/dehydratase family J163_03751 PF07992 Pyridine nucleotide-disulphide oxidoreductase J163_03751 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J163_03756 PF00535 Glycosyl transferase family 2 J163_03758 PF00005 ABC transporter J163_03758 PF14524 Wzt C-terminal domain J163_03760 PF01053 Cys/Met metabolism PLP-dependent enzyme J163_03761 PF00291 Pyridoxal-phosphate dependent enzyme J163_03761 PF00571 CBS domain J163_03765 PF00437 Type II/IV secretion system protein J163_03766 PF02798 Glutathione S-transferase, N-terminal domain J163_03766 PF14497 Glutathione S-transferase, C-terminal domain J163_03768 PF00271 Helicase conserved C-terminal domain J163_03768 PF00270 DEAD/DEAH box helicase J163_03771 PF07715 TonB-dependent Receptor Plug Domain J163_03771 PF00593 TonB dependent receptor J163_03772 PF01242 6-pyruvoyl tetrahydropterin synthase J163_03775 PF13185 GAF domain J163_03777 PF00756 Putative esterase J163_03778 PF07715 TonB-dependent Receptor Plug Domain J163_03778 PF00593 TonB dependent receptor J163_03779 PF13419 Haloacid dehalogenase-like hydrolase J163_03780 PF11799 impB/mucB/samB family C-terminal domain J163_03780 PF00817 impB/mucB/samB family J163_03781 PF07977 FabA-like domain J163_03782 PF02801 Beta-ketoacyl synthase, C-terminal domain J163_03782 PF00109 Beta-ketoacyl synthase, N-terminal domain J163_03784 PF01432 Peptidase family M3 J163_03787 PF07732 Multicopper oxidase J163_03787 PF00394 Multicopper oxidase J163_03787 PF07731 Multicopper oxidase J163_03788 PF05275 Copper resistance protein B precursor (CopB) J163_03789 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J163_03795 PF01380 SIS domain J163_03796 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J163_03797 PF12704 MacB-like periplasmic core domain J163_03797 PF02687 FtsX-like permease family J163_03797 PF00005 ABC transporter J163_03798 PF02687 FtsX-like permease family J163_03798 PF00005 ABC transporter J163_03798 PF12704 MacB-like periplasmic core domain J163_03799 PF02687 FtsX-like permease family J163_03799 PF12704 MacB-like periplasmic core domain J163_03801 PF00158 Sigma-54 interaction domain J163_03801 PF00072 Response regulator receiver domain J163_03802 PF12804 MobA-like NTP transferase domain J163_03802 PF14602 Hexapeptide repeat of succinyl-transferase J163_03802 PF00132 Bacterial transferase hexapeptide (six repeats) J163_03805 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J163_03805 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J163_03806 PF02874 ATP synthase alpha/beta family, beta-barrel domain J163_03806 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J163_03807 PF00231 ATP synthase J163_03808 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J163_03808 PF00306 ATP synthase alpha/beta chain, C terminal domain J163_03808 PF02874 ATP synthase alpha/beta family, beta-barrel domain J163_03809 PF00213 ATP synthase delta (OSCP) subunit J163_03810 PF00430 ATP synthase B/B' CF(0) J163_03811 PF00137 ATP synthase subunit C J163_03812 PF00119 ATP synthase A chain J163_03816 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J163_03816 PF07992 Pyridine nucleotide-disulphide oxidoreductase J163_03818 PF00364 Biotin-requiring enzyme J163_03818 PF02817 e3 binding domain J163_03818 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J163_03824 PF03180 NLPA lipoprotein J163_03825 PF00528 Binding-protein-dependent transport system inner membrane component J163_03826 PF00005 ABC transporter J163_03826 PF09383 NIL domain J163_03827 PF00892 EamA-like transporter family J163_03828 PF04461 Protein of unknown function (DUF520) J163_03830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_03830 PF00512 His Kinase A (phospho-acceptor) domain J163_03830 PF00989 PAS fold J163_03830 PF00072 Response regulator receiver domain J163_03830 PF01627 Hpt domain J163_03830 PF18415 Histidine kinase receptor ArcB trans-membrane domain J163_03834 PF13419 Haloacid dehalogenase-like hydrolase J163_03835 PF00849 RNA pseudouridylate synthase J163_03835 PF01479 S4 domain J163_03836 PF08468 Methyltransferase small domain N-terminal J163_03836 PF05175 Methyltransferase small domain J163_03838 PF07995 Glucose / Sorbosone dehydrogenase J163_03840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_03840 PF00512 His Kinase A (phospho-acceptor) domain J163_03840 PF00989 PAS fold J163_03844 PF00842 Alanine racemase, C-terminal domain J163_03844 PF01168 Alanine racemase, N-terminal domain J163_03845 PF01266 FAD dependent oxidoreductase J163_03846 PF01037 Lrp/AsnC ligand binding domain J163_03848 PF01641 SelR domain J163_03850 PF01618 MotA/TolQ/ExbB proton channel family J163_03851 PF00691 OmpA family J163_03851 PF13677 Membrane MotB of proton-channel complex MotA/MotB J163_03856 PF01061 ABC-2 type transporter J163_03857 PF00005 ABC transporter J163_03858 PF00999 Sodium/hydrogen exchanger family J163_03859 PF02469 Fasciclin domain J163_03860 PF03167 Uracil DNA glycosylase superfamily J163_03862 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J163_03864 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_03864 PF03466 LysR substrate binding domain J163_03865 PF03358 NADPH-dependent FMN reductase J163_03866 PF00248 Aldo/keto reductase family J163_03868 PF05649 Peptidase family M13 J163_03868 PF01431 Peptidase family M13 J163_03872 PF13520 Amino acid permease J163_03874 PF04397 LytTr DNA-binding domain J163_03874 PF00072 Response regulator receiver domain J163_03875 PF00672 HAMP domain J163_03875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_03875 PF06580 Histidine kinase J163_03875 PF02743 Cache domain J163_03878 PF05974 Domain of unknown function (DUF892) J163_03879 PF05067 Manganese containing catalase J163_03882 PF01739 CheR methyltransferase, SAM binding domain J163_03882 PF03705 CheR methyltransferase, all-alpha domain J163_03882 PF01339 CheB methylesterase J163_03882 PF08448 PAS fold J163_03885 PF00158 Sigma-54 interaction domain J163_03885 PF02954 Bacterial regulatory protein, Fis family J163_03885 PF00072 Response regulator receiver domain J163_03887 PF01654 Cytochrome bd terminal oxidase subunit I J163_03888 PF02322 Cytochrome bd terminal oxidase subunit II J163_03892 PF16363 GDP-mannose 4,6 dehydratase J163_03894 PF03275 UDP-galactopyranose mutase J163_03896 PF00664 ABC transporter transmembrane region J163_03896 PF00005 ABC transporter J163_03899 PF08240 Alcohol dehydrogenase GroES-like domain J163_03899 PF13823 Alcohol dehydrogenase GroES-associated J163_03899 PF00107 Zinc-binding dehydrogenase J163_03908 PF00593 TonB dependent receptor J163_03908 PF07715 TonB-dependent Receptor Plug Domain J163_03911 PF00005 ABC transporter J163_03913 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_03913 PF03466 LysR substrate binding domain J163_03914 PF01042 Endoribonuclease L-PSP J163_03916 PF01527 Transposase J163_03920 PF02203 Tar ligand binding domain homologue J163_03920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J163_03920 PF00672 HAMP domain J163_03923 PF03466 LysR substrate binding domain J163_03923 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_03924 PF02525 Flavodoxin-like fold J163_03933 PF00557 Metallopeptidase family M24 J163_03938 PF04546 Sigma-70, non-essential region J163_03938 PF04542 Sigma-70 region 2 J163_03938 PF03979 Sigma-70 factor, region 1.1 J163_03938 PF04545 Sigma-70, region 4 J163_03938 PF04539 Sigma-70 region 3 J163_03938 PF00140 Sigma-70 factor, region 1.2 J163_03939 PF02580 D-Tyr-tRNA(Tyr) deacylase J163_03940 PF03279 Bacterial lipid A biosynthesis acyltransferase J163_03942 PF00925 GTP cyclohydrolase II J163_03946 PF00535 Glycosyl transferase family 2 J163_03949 PF01189 16S rRNA methyltransferase RsmB/F J163_03949 PF01029 NusB family J163_03950 PF00551 Formyl transferase J163_03950 PF02911 Formyl transferase, C-terminal domain J163_03951 PF01327 Polypeptide deformylase J163_03952 PF01476 LysM domain J163_03953 PF17782 DprA winged helix domain J163_03953 PF02481 DNA recombination-mediator protein A J163_03954 PF04361 Protein of unknown function (DUF494) J163_03955 PF00114 Pilin (bacterial filament) J163_03955 PF07963 Prokaryotic N-terminal methylation motif J163_03957 PF13368 Topoisomerase C-terminal repeat J163_03957 PF01751 Toprim domain J163_03957 PF01131 DNA topoisomerase J163_03958 PF01300 Telomere recombination J163_03963 PF01343 Peptidase family S49 J163_03964 PF01554 MatE J163_03968 PF00270 DEAD/DEAH box helicase J163_03968 PF00271 Helicase conserved C-terminal domain J163_03968 PF18074 Primosomal protein N C-terminal domain J163_03968 PF17764 3′ DNA-binding domain (3′BD) J163_03968 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J163_03969 PF13417 Glutathione S-transferase, N-terminal domain J163_03969 PF00043 Glutathione S-transferase, C-terminal domain J163_03972 PF07992 Pyridine nucleotide-disulphide oxidoreductase J163_03973 PF03458 UPF0126 domain J163_03974 PF04542 Sigma-70 region 2 J163_03974 PF04545 Sigma-70, region 4 J163_03975 PF03167 Uracil DNA glycosylase superfamily J163_03976 PF00072 Response regulator receiver domain J163_03976 PF01339 CheB methylesterase J163_03977 PF18075 FtsX extracellular domain J163_03978 PF00005 ABC transporter J163_03979 PF00271 Helicase conserved C-terminal domain J163_03979 PF12300 ATP-dependent RNA helicase RhlB J163_03979 PF00270 DEAD/DEAH box helicase J163_03980 PF00085 Thioredoxin J163_03981 PF07497 Rho termination factor, RNA-binding domain J163_03981 PF07498 Rho termination factor, N-terminal domain J163_03981 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J163_03982 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) J163_03983 PF03466 LysR substrate binding domain J163_03983 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_03985 PF03971 Monomeric isocitrate dehydrogenase J163_03988 PF09704 CRISPR-associated protein (Cas_Cas5) J163_03993 PF01867 CRISPR associated protein Cas1 J163_03994 PF09827 CRISPR associated protein Cas2 J163_03996 PF01476 LysM domain J163_03996 PF04972 BON domain J163_03997 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J163_03997 PF14489 QueF-like protein J163_03998 PF07687 Peptidase dimerisation domain J163_03998 PF01546 Peptidase family M20/M25/M40 J163_03999 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J163_04000 PF00873 AcrB/AcrD/AcrF family J163_04001 PF00873 AcrB/AcrD/AcrF family J163_04002 PF07063 Domain of unknown function (DUF1338) J163_04010 PF01427 D-ala-D-ala dipeptidase J163_04011 PF01510 N-acetylmuramoyl-L-alanine amidase J163_04013 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J163_04013 PF13378 Enolase C-terminal domain-like J163_04015 PF13520 Amino acid permease J163_04018 PF05360 yiaA/B two helix domain J163_04019 PF07995 Glucose / Sorbosone dehydrogenase J163_04020 PF01915 Glycosyl hydrolase family 3 C-terminal domain J163_04020 PF00933 Glycosyl hydrolase family 3 N terminal domain J163_04020 PF14310 Fibronectin type III-like domain J163_04021 PF02152 Dihydroneopterin aldolase J163_04022 PF00814 Glycoprotease family J163_04023 PF01165 Ribosomal protein S21 J163_04024 PF09424 Yqey-like protein J163_04025 PF03631 Virulence factor BrkB J163_04026 PF01807 CHC2 zinc finger J163_04026 PF08275 DNA primase catalytic core, N-terminal domain J163_04026 PF10410 DnaB-helicase binding domain of primase J163_04026 PF08278 DNA primase DnaG DnaB-binding J163_04027 PF13593 SBF-like CPA transporter family (DUF4137) J163_04029 PF01040 UbiA prenyltransferase family J163_04034 PF00510 Cytochrome c oxidase subunit III J163_04035 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 J163_04037 PF00115 Cytochrome C and Quinol oxidase polypeptide I J163_04038 PF02790 Cytochrome C oxidase subunit II, transmembrane domain J163_04038 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J163_04040 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J163_04040 PF00171 Aldehyde dehydrogenase family J163_04040 PF14850 DNA-binding domain of Proline dehydrogenase J163_04040 PF01619 Proline dehydrogenase J163_04048 PF00579 tRNA synthetases class I (W and Y) J163_04049 PF01551 Peptidase family M23 J163_04049 PF04225 Opacity-associated protein A LysM-like domain J163_04050 PF03702 Anhydro-N-acetylmuramic acid kinase J163_04052 PF07690 Major Facilitator Superfamily J163_04053 PF03372 Endonuclease/Exonuclease/phosphatase family J163_04054 PF00156 Phosphoribosyl transferase domain J163_04056 PF13614 AAA domain J163_04057 PF02195 ParB-like nuclease domain J163_04057 PF17762 HTH domain found in ParB protein J163_04059 PF01370 NAD dependent epimerase/dehydratase family J163_04060 PF00535 Glycosyl transferase family 2 J163_04063 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J163_04063 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J163_04063 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J163_04063 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J163_04064 PF00692 dUTPase J163_04065 PF04127 DNA / pantothenate metabolism flavoprotein J163_04065 PF02441 Flavoprotein J163_04066 PF04002 RadC-like JAB domain J163_04067 PF00750 tRNA synthetases class I (R) J163_04067 PF03485 Arginyl tRNA synthetase N terminal domain J163_04067 PF05746 DALR anticodon binding domain J163_04070 PF00106 short chain dehydrogenase J163_04071 PF01757 Acyltransferase family J163_04072 PF03033 Glycosyltransferase family 28 N-terminal domain J163_04073 PF00975 Thioesterase domain J163_04073 PF00550 Phosphopantetheine attachment site J163_04073 PF00668 Condensation domain J163_04073 PF13193 AMP-binding enzyme C-terminal domain J163_04073 PF00501 AMP-binding enzyme J163_04074 PF17810 Arginine decarboxylase helical bundle domain J163_04074 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J163_04074 PF17944 Arginine decarboxylase C-terminal helical extension J163_04075 PF17284 Spermidine synthase tetramerisation domain J163_04080 PF00543 Nitrogen regulatory protein P-II J163_04081 PF04380 Membrane fusogenic activity J163_04082 PF01078 Magnesium chelatase, subunit ChlI J163_04082 PF13335 Magnesium chelatase, subunit ChlI C-terminal J163_04085 PF12792 CSS motif domain associated with EAL J163_04085 PF00563 EAL domain J163_04086 PF00487 Fatty acid desaturase J163_04087 PF00111 2Fe-2S iron-sulfur cluster binding domain J163_04087 PF00175 Oxidoreductase NAD-binding domain J163_04087 PF00970 Oxidoreductase FAD-binding domain J163_04088 PF00440 Bacterial regulatory proteins, tetR family J163_04094 PF01139 tRNA-splicing ligase RtcB J163_04102 PF01370 NAD dependent epimerase/dehydratase family J163_04102 PF08338 Domain of unknown function (DUF1731) J163_04103 PF00486 Transcriptional regulatory protein, C terminal J163_04103 PF00072 Response regulator receiver domain J163_04104 PF08521 Two-component sensor kinase N-terminal J163_04104 PF00512 His Kinase A (phospho-acceptor) domain J163_04104 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_04108 PF00595 PDZ domain J163_04112 PF01594 AI-2E family transporter J163_04113 PF13419 Haloacid dehalogenase-like hydrolase J163_04114 PF00883 Cytosol aminopeptidase family, catalytic domain J163_04114 PF02789 Cytosol aminopeptidase family, N-terminal domain J163_04116 PF08281 Sigma-70, region 4 J163_04116 PF04542 Sigma-70 region 2 J163_04117 PF00199 Catalase J163_04120 PF00196 Bacterial regulatory proteins, luxR family J163_04120 PF00072 Response regulator receiver domain J163_04121 PF07730 Histidine kinase J163_04122 PF13533 Biotin-lipoyl like J163_04123 PF00005 ABC transporter J163_04127 PF00892 EamA-like transporter family J163_04128 PF00892 EamA-like transporter family J163_04129 PF00892 EamA-like transporter family J163_04132 PF00753 Metallo-beta-lactamase superfamily J163_04133 PF00579 tRNA synthetases class I (W and Y) J163_04134 PF05532 CsbD-like J163_04137 PF00491 Arginase family J163_04142 PF02223 Thymidylate kinase J163_04145 PF03309 Type III pantothenate kinase J163_04146 PF08279 HTH domain J163_04146 PF03099 Biotin/lipoate A/B protein ligase family J163_04146 PF02237 Biotin protein ligase C terminal domain J163_04148 PF06167 Glucose-regulated metallo-peptidase M90 J163_04151 PF00512 His Kinase A (phospho-acceptor) domain J163_04151 PF00672 HAMP domain J163_04151 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_04152 PF00072 Response regulator receiver domain J163_04152 PF00486 Transcriptional regulatory protein, C terminal J163_04154 PF01207 Dihydrouridine synthase (Dus) J163_04157 PF00199 Catalase J163_04157 PF06628 Catalase-related immune-responsive J163_04158 PF06733 DEAD_2 J163_04158 PF13307 Helicase C-terminal domain J163_04161 PF08501 Shikimate dehydrogenase substrate binding domain J163_04161 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J163_04161 PF01488 Shikimate / quinate 5-dehydrogenase J163_04163 PF00258 Flavodoxin J163_04163 PF00667 FAD binding domain J163_04163 PF00175 Oxidoreductase NAD-binding domain J163_04165 PF03466 LysR substrate binding domain J163_04165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_04167 PF00490 Delta-aminolevulinic acid dehydratase J163_04171 PF00326 Prolyl oligopeptidase family J163_04171 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J163_04172 PF00043 Glutathione S-transferase, C-terminal domain J163_04172 PF02798 Glutathione S-transferase, N-terminal domain J163_04176 PF04820 Tryptophan halogenase J163_04179 PF00005 ABC transporter J163_04181 PF01381 Helix-turn-helix J163_04183 PF01229 Glycosyl hydrolases family 39 J163_04184 PF02583 Metal-sensitive transcriptional repressor J163_04185 PF01545 Cation efflux family J163_04185 PF16916 Dimerisation domain of Zinc Transporter J163_04187 PF07715 TonB-dependent Receptor Plug Domain J163_04187 PF00593 TonB dependent receptor J163_04189 PF01965 DJ-1/PfpI family J163_04189 PF12833 Helix-turn-helix domain J163_04190 PF00970 Oxidoreductase FAD-binding domain J163_04190 PF00175 Oxidoreductase NAD-binding domain J163_04190 PF00111 2Fe-2S iron-sulfur cluster binding domain J163_04191 PF00005 ABC transporter J163_04192 PF01061 ABC-2 type transporter J163_04195 PF08546 Ketopantoate reductase PanE/ApbA C terminal J163_04195 PF02558 Ketopantoate reductase PanE/ApbA J163_04201 PF00268 Ribonucleotide reductase, small chain J163_04202 PF02867 Ribonucleotide reductase, barrel domain J163_04202 PF00317 Ribonucleotide reductase, all-alpha domain J163_04202 PF03477 ATP cone domain J163_04204 PF13380 CoA binding domain J163_04204 PF13607 Succinyl-CoA ligase like flavodoxin domain J163_04204 PF00583 Acetyltransferase (GNAT) family J163_04205 PF00571 CBS domain J163_04205 PF01769 Divalent cation transporter J163_04205 PF03448 MgtE intracellular N domain J163_04206 PF00194 Eukaryotic-type carbonic anhydrase J163_04207 PF02254 TrkA-N domain J163_04207 PF00999 Sodium/hydrogen exchanger family J163_04208 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J163_04208 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J163_04209 PF00723 Glycosyl hydrolases family 15 J163_04212 PF05166 YcgL domain J163_04213 PF02801 Beta-ketoacyl synthase, C-terminal domain J163_04213 PF00109 Beta-ketoacyl synthase, N-terminal domain J163_04215 PF00535 Glycosyl transferase family 2 J163_04226 PF07977 FabA-like domain J163_04227 PF01553 Acyltransferase J163_04229 PF00550 Phosphopantetheine attachment site J163_04230 PF04820 Tryptophan halogenase J163_04234 PF07676 WD40-like Beta Propeller Repeat J163_04234 PF00326 Prolyl oligopeptidase family J163_04237 PF01218 Coproporphyrinogen III oxidase J163_04238 PF01367 5'-3' exonuclease, C-terminal SAM fold J163_04238 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J163_04238 PF00476 DNA polymerase family A J163_04238 PF01612 3'-5' exonuclease J163_04244 PF00069 Protein kinase domain J163_04244 PF03793 PASTA domain J163_04252 PF04717 Type VI secretion system, phage-baseplate injector J163_04255 PF03793 PASTA domain J163_04255 PF00069 Protein kinase domain J163_04257 PF08281 Sigma-70, region 4 J163_04257 PF04542 Sigma-70 region 2 J163_04260 PF00328 Histidine phosphatase superfamily (branch 2) J163_04267 PF10431 C-terminal, D2-small domain, of ClpB protein J163_04267 PF17871 AAA lid domain J163_04267 PF07724 AAA domain (Cdc48 subfamily) J163_04267 PF00004 ATPase family associated with various cellular activities (AAA) J163_04272 PF05638 Type VI secretion system effector, Hcp J163_04277 PF12464 Maltose acetyltransferase J163_04277 PF14602 Hexapeptide repeat of succinyl-transferase J163_04278 PF13361 UvrD-like helicase C-terminal domain J163_04278 PF00580 UvrD/REP helicase N-terminal domain J163_04279 PF13361 UvrD-like helicase C-terminal domain J163_04279 PF00580 UvrD/REP helicase N-terminal domain J163_04281 PF13091 PLD-like domain J163_04281 PF13396 Phospholipase_D-nuclease N-terminal J163_04282 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_04282 PF03466 LysR substrate binding domain J163_04283 PF03737 Aldolase/RraA J163_04284 PF04303 PrpF protein J163_04285 PF04909 Amidohydrolase J163_04286 PF00471 Ribosomal protein L33 J163_04287 PF00830 Ribosomal L28 family J163_04288 PF00873 AcrB/AcrD/AcrF family J163_04289 PF13533 Biotin-lipoyl like J163_04293 PF02527 rRNA small subunit methyltransferase G J163_04294 PF09423 PhoD-like phosphatase J163_04294 PF16655 PhoD-like phosphatase, N-terminal domain J163_04296 PF16655 PhoD-like phosphatase, N-terminal domain J163_04296 PF09423 PhoD-like phosphatase J163_04297 PF01648 4'-phosphopantetheinyl transferase superfamily J163_04298 PF04226 Transglycosylase associated protein J163_04300 PF03372 Endonuclease/Exonuclease/phosphatase family J163_04302 PF00480 ROK family J163_04304 PF09312 SurA N-terminal domain J163_04306 PF00474 Sodium:solute symporter family J163_04307 PF04341 Protein of unknown function, DUF485 J163_04309 PF13193 AMP-binding enzyme C-terminal domain J163_04309 PF16177 Acetyl-coenzyme A synthetase N-terminus J163_04309 PF00501 AMP-binding enzyme J163_04310 PF00196 Bacterial regulatory proteins, luxR family J163_04310 PF00072 Response regulator receiver domain J163_04315 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J163_04315 PF04616 Glycosyl hydrolases family 43 J163_04316 PF00248 Aldo/keto reductase family J163_04319 PF01557 Fumarylacetoacetate (FAA) hydrolase family J163_04320 PF13378 Enolase C-terminal domain-like J163_04320 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J163_04322 PF05336 L-rhamnose mutarotase J163_04323 PF07690 Major Facilitator Superfamily J163_04324 PF09339 IclR helix-turn-helix domain J163_04324 PF01614 Bacterial transcriptional regulator J163_04325 PF02659 Putative manganese efflux pump J163_04326 PF00512 His Kinase A (phospho-acceptor) domain J163_04326 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_04328 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J163_04328 PF06165 Glycosyltransferase family 36 J163_04331 PF13570 PQQ-like domain J163_04331 PF13360 PQQ-like domain J163_04331 PF01011 PQQ enzyme repeat J163_04335 PF04357 TamB, inner membrane protein subunit of TAM complex J163_04336 PF17243 POTRA domain TamA domain 1 J163_04336 PF01103 Surface antigen J163_04339 PF01527 Transposase J163_04340 PF13333 Integrase core domain J163_04340 PF00665 Integrase core domain J163_04340 PF13276 HTH-like domain J163_04341 PF03412 Peptidase C39 family J163_04341 PF00005 ABC transporter J163_04341 PF00664 ABC transporter transmembrane region J163_04343 PF02092 Glycyl-tRNA synthetase beta subunit J163_04343 PF05746 DALR anticodon binding domain J163_04344 PF02091 Glycyl-tRNA synthetase alpha subunit J163_04345 PF00437 Type II/IV secretion system protein J163_04345 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J163_04347 PF00958 GMP synthase C terminal domain J163_04347 PF00117 Glutamine amidotransferase class-I J163_04349 PF00902 Sec-independent protein translocase protein (TatC) J163_04350 PF02416 mttA/Hcf106 family J163_04351 PF02416 mttA/Hcf106 family J163_04353 PF00762 Ferrochelatase J163_04354 PF12697 Alpha/beta hydrolase family J163_04356 PF04381 Putative exonuclease, RdgC J163_04357 PF01171 PP-loop family J163_04359 PF00356 Bacterial regulatory proteins, lacI family J163_04360 PF07477 Glycosyl hydrolase family 67 C-terminus J163_04360 PF07488 Glycosyl hydrolase family 67 middle domain J163_04360 PF03648 Glycosyl hydrolase family 67 N-terminus J163_04362 PF13378 Enolase C-terminal domain-like J163_04362 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J163_04363 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J163_04363 PF04616 Glycosyl hydrolases family 43 J163_04364 PF14310 Fibronectin type III-like domain J163_04364 PF00933 Glycosyl hydrolase family 3 N terminal domain J163_04364 PF01915 Glycosyl hydrolase family 3 C-terminal domain J163_04364 PF07691 PA14 domain J163_04365 PF08125 Mannitol dehydrogenase C-terminal domain J163_04365 PF01232 Mannitol dehydrogenase Rossmann domain J163_04370 PF00171 Aldehyde dehydrogenase family J163_04373 PF00202 Aminotransferase class-III J163_04374 PF00202 Aminotransferase class-III J163_04376 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J163_04376 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J163_04379 PF08450 SMP-30/Gluconolactonase/LRE-like region J163_04380 PF00331 Glycosyl hydrolase family 10 J163_04381 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J163_04381 PF16355 Domain of unknown function (DUF4982) J163_04381 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J163_04381 PF02837 Glycosyl hydrolases family 2, sugar binding domain J163_04381 PF00703 Glycosyl hydrolases family 2 J163_04382 PF02614 Glucuronate isomerase J163_04383 PF03422 Carbohydrate binding module (family 6) J163_04383 PF00553 Cellulose binding domain J163_04383 PF00331 Glycosyl hydrolase family 10 J163_04385 PF03422 Carbohydrate binding module (family 6) J163_04385 PF00331 Glycosyl hydrolase family 10 J163_04385 PF00553 Cellulose binding domain J163_04389 PF04616 Glycosyl hydrolases family 43 J163_04399 PF16197 Ketoacyl-synthetase C-terminal extension J163_04399 PF00107 Zinc-binding dehydrogenase J163_04399 PF08659 KR domain J163_04399 PF02801 Beta-ketoacyl synthase, C-terminal domain J163_04399 PF14765 Polyketide synthase dehydratase J163_04399 PF00550 Phosphopantetheine attachment site J163_04399 PF00109 Beta-ketoacyl synthase, N-terminal domain J163_04399 PF08240 Alcohol dehydrogenase GroES-like domain J163_04399 PF00698 Acyl transferase domain J163_04400 PF01553 Acyltransferase J163_04402 PF00356 Bacterial regulatory proteins, lacI family J163_04405 PF04820 Tryptophan halogenase J163_04406 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J163_04407 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) J163_04409 PF04337 Protein of unknown function, DUF480 J163_04412 PF13361 UvrD-like helicase C-terminal domain J163_04412 PF00580 UvrD/REP helicase N-terminal domain J163_04413 PF00265 Thymidine kinase J163_04414 PF00512 His Kinase A (phospho-acceptor) domain J163_04414 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J163_04414 PF01590 GAF domain J163_04414 PF00360 Phytochrome region J163_04414 PF08446 PAS fold J163_04415 PF04349 Periplasmic glucan biosynthesis protein, MdoG J163_04417 PF06827 Zinc finger found in FPG and IleRS J163_04417 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J163_04417 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J163_04424 PF03594 Benzoate membrane transport protein J163_04425 PF08446 PAS fold J163_04425 PF00360 Phytochrome region J163_04425 PF13426 PAS domain J163_04425 PF01590 GAF domain J163_04426 PF01126 Heme oxygenase J163_04427 PF07690 Major Facilitator Superfamily J163_04428 PF01263 Aldose 1-epimerase J163_04430 PF02810 SEC-C motif J163_04431 PF01925 Sulfite exporter TauE/SafE J163_04435 PF01227 GTP cyclohydrolase I J163_04437 PF07869 Protein of unknown function (DUF1656) J163_04438 PF00529 HlyD membrane-fusion protein of T1SS J163_04438 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J163_04439 PF02321 Outer membrane efflux protein J163_04440 PF04632 Fusaric acid resistance protein family J163_04441 PF00083 Sugar (and other) transporter J163_04442 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family J163_04443 PF13396 Phospholipase_D-nuclease N-terminal J163_04443 PF13091 PLD-like domain J163_04448 PF01850 PIN domain J163_04453 PF00849 RNA pseudouridylate synthase J163_04455 PF01527 Transposase J163_04456 PF13333 Integrase core domain J163_04456 PF00665 Integrase core domain J163_04456 PF13276 HTH-like domain J163_04459 PF02785 Biotin carboxylase C-terminal domain J163_04459 PF00289 Biotin carboxylase, N-terminal domain J163_04459 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J163_04460 PF01425 Amidase J163_04467 PF13538 UvrD-like helicase C-terminal domain J163_04470 PF12705 PD-(D/E)XK nuclease superfamily J163_04470 PF13361 UvrD-like helicase C-terminal domain J163_04470 PF00580 UvrD/REP helicase N-terminal domain J163_04471 PF17946 RecC C-terminal domain J163_04473 PF00005 ABC transporter J163_04474 PF02405 Permease MlaE J163_04475 PF02470 MlaD protein J163_04476 PF05494 MlaC protein J163_04478 PF04333 MlaA lipoprotein J163_04480 PF00255 Glutathione peroxidase J163_04482 PF02646 RmuC family J163_04483 PF00107 Zinc-binding dehydrogenase J163_04483 PF08240 Alcohol dehydrogenase GroES-like domain J163_04484 PF03466 LysR substrate binding domain J163_04484 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J163_04486 PF13417 Glutathione S-transferase, N-terminal domain J163_04486 PF00043 Glutathione S-transferase, C-terminal domain J163_04488 PF13520 Amino acid permease J163_04489 PF07971 Glycosyl hydrolase family 92 J163_04489 PF17678 Glycosyl hydrolase family 92 N-terminal domain J163_04490 PF10947 Protein of unknown function (DUF2628) J163_04491 PF00990 Diguanylate cyclase, GGDEF domain J163_04492 PF05651 Putative sugar diacid recognition J163_04492 PF13556 PucR C-terminal helix-turn-helix domain J163_04492 PF17853 GGDEF-like domain J163_04493 PF02595 Glycerate kinase family J163_04494 PF07690 Major Facilitator Superfamily J163_04497 PF17785 PUA-like domain J163_04497 PF10672 S-adenosylmethionine-dependent methyltransferase J163_04499 PF03741 Integral membrane protein TerC family J163_04500 PF01694 Rhomboid family J163_04501 PF03009 Glycerophosphoryl diester phosphodiesterase family J163_04503 PF01569 PAP2 superfamily J163_04504 PF01926 50S ribosome-binding GTPase J163_04504 PF12631 MnmE helical domain J163_04504 PF10396 GTP-binding protein TrmE N-terminus J163_04505 PF01522 Polysaccharide deacetylase J163_04506 PF02096 60Kd inner membrane protein J163_04506 PF14849 YidC periplasmic domain J163_04507 PF00825 Ribonuclease P J163_04508 PF00468 Ribosomal protein L34