J164_00006 SM00857 Resolvase, N terminal domain J164_00007 SM00966 SpoVT / AbrB like domain J164_00029 SM00857 Resolvase, N terminal domain J164_00035 SM00670 Large family of predicted nucleotide-binding domains J164_00037 SM00857 Resolvase, N terminal domain J164_00095 SM00470 ParB-like nuclease domain J164_00102 SM00857 Resolvase, N terminal domain J164_00107 SM00670 Large family of predicted nucleotide-binding domains J164_00109 SM00857 Resolvase, N terminal domain J164_00110 SM00382 ATPases associated with a variety of cellular activities J164_00110 SM00760 Bacterial dnaA protein helix-turn-helix domain J164_00111 SM00480 DNA polymerase III beta subunit J164_00114 SM00387 Histidine kinase-like ATPases J164_00114 SM00433 TopoisomeraseII J164_00117 SM00028 Tetratricopeptide repeats J164_00124 SM00155 Phospholipase D. Active site motifs. J164_00127 SM00729 Elongator protein 3, MiaB family, Radical SAM J164_00133 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J164_00133 SM00245 tail specific protease J164_00141 SM00829 Enoylreductase J164_00166 SM00382 ATPases associated with a variety of cellular activities J164_00190 SM00487 DEAD-like helicases superfamily J164_00190 SM00490 helicase superfamily c-terminal domain J164_00194 SM00822 J164_00194 J164_00195 SM00822 J164_00195 J164_00244 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen J164_00248 SM00421 helix_turn_helix, Lux Regulon J164_00248 SM00448 cheY-homologous receiver domain J164_00252 SM00862 Transcriptional regulatory protein, C terminal J164_00268 SM00642 Alpha-amylase domain J164_00269 SM00642 Alpha-amylase domain J164_00270 SM00642 Alpha-amylase domain J164_00280 SM00354 helix_turn _helix lactose operon repressor J164_00288 SM00344 helix_turn_helix ASNC type J164_00292 SM00382 ATPases associated with a variety of cellular activities J164_00295 SM00382 ATPases associated with a variety of cellular activities J164_00301 SM00530 Helix-turn-helix XRE-family like proteins J164_00306 SM00855 Phosphoglycerate mutase family J164_00307 SM00867 YceI-like domain J164_00308 SM00155 Phospholipase D. Active site motifs. J164_00310 SM00563 Phosphate acyltransferases J164_00313 SM00028 Tetratricopeptide repeats J164_00315 SM00829 Enoylreductase J164_00318 SM01230 J164_00318 J164_00319 SM00938 Nitrogen regulatory protein P-II J164_00321 SM00387 Histidine kinase-like ATPases J164_00321 SM00388 His Kinase A (phosphoacceptor) domain J164_00322 SM00382 ATPases associated with a variety of cellular activities J164_00322 SM00448 cheY-homologous receiver domain J164_00334 SM00450 Rhodanese Homology Domain J164_00339 SM00387 Histidine kinase-like ATPases J164_00339 SM00388 His Kinase A (phosphoacceptor) domain J164_00340 SM00382 ATPases associated with a variety of cellular activities J164_00340 SM00448 cheY-homologous receiver domain J164_00362 SM00563 Phosphate acyltransferases J164_00368 SM00342 helix_turn_helix, arabinose operon control protein J164_00373 SM00100 Cyclic nucleotide-monophosphate binding domain J164_00373 SM00267 diguanylate cyclase J164_00378 SM00878 Biotin carboxylase C-terminal domain J164_00383 SM00953 J164_00383 J164_00391 SM00833 Cobalamin synthesis protein cobW C-terminal domain J164_00396 SM00347 helix_turn_helix multiple antibiotic resistance protein J164_00402 SM00829 Enoylreductase J164_00408 SM00487 DEAD-like helicases superfamily J164_00408 SM00490 helicase superfamily c-terminal domain J164_00408 SM00847 Helicase associated domain (HA2) Add an annotation J164_00433 SM00422 helix_turn_helix, mercury resistance J164_00440 SM00448 cheY-homologous receiver domain J164_00440 SM00862 Transcriptional regulatory protein, C terminal J164_00441 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_00441 SM00387 Histidine kinase-like ATPases J164_00441 SM00388 His Kinase A (phosphoacceptor) domain J164_00467 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J164_00468 SM00347 helix_turn_helix multiple antibiotic resistance protein J164_00472 SM00342 helix_turn_helix, arabinose operon control protein J164_00479 SM00420 helix_turn_helix, Deoxyribose operon repressor J164_00479 SM01134 J164_00479 J164_00482 SM00882 Coenzyme A transferase J164_00483 SM00882 Coenzyme A transferase J164_00487 SM00998 Adenylosuccinate lyase C-terminus J164_00491 SM00346 helix_turn_helix isocitrate lyase regulation J164_00492 SM00090 RIO-like kinase J164_00495 SM01228 J164_00495 J164_00506 SM00729 Elongator protein 3, MiaB family, Radical SAM J164_00506 SM00876 Biotin and Thiamin Synthesis associated domain J164_00511 SM00369 Leucine-rich repeats, typical (most populated) subfamily J164_00531 SM00382 ATPases associated with a variety of cellular activities J164_00543 SM00267 diguanylate cyclase J164_00545 SM00642 Alpha-amylase domain J164_00546 SM00642 Alpha-amylase domain J164_00548 SM00642 Alpha-amylase domain J164_00550 SM00642 Alpha-amylase domain J164_00559 SM00822 J164_00559 J164_00561 SM00487 DEAD-like helicases superfamily J164_00561 SM00490 helicase superfamily c-terminal domain J164_00564 SM00326 Src homology 3 domains J164_00565 SM00861 Transketolase, pyrimidine binding domain J164_00567 SM00237 Domains in Na-Ca exchangers and integrin-beta4 J164_00571 SM00347 helix_turn_helix multiple antibiotic resistance protein J164_00590 SM00271 DnaJ molecular chaperone homology domain J164_00594 SM00046 Diacylglycerol kinase catalytic domain (presumed) J164_00598 SM00903 Flavin reductase like domain J164_00602 SM00100 Cyclic nucleotide-monophosphate binding domain J164_00602 SM00419 helix_turn_helix, cAMP Regulatory protein J164_00612 SM00387 Histidine kinase-like ATPases J164_00612 SM00388 His Kinase A (phosphoacceptor) domain J164_00612 SM00448 cheY-homologous receiver domain J164_00613 SM00052 Putative diguanylate phosphodiesterase J164_00613 SM00267 diguanylate cyclase J164_00613 SM00448 cheY-homologous receiver domain J164_00624 SM00563 Phosphate acyltransferases J164_00628 SM01209 J164_00628 J164_00628 SM01210 J164_00628 J164_00630 SM00798 AICARFT/IMPCHase bienzyme J164_00630 SM00851 MGS-like domain J164_00633 SM00195 Dual specificity phosphatase, catalytic domain J164_00637 SM00563 Phosphate acyltransferases J164_00642 SM00530 Helix-turn-helix XRE-family like proteins J164_00647 SM00878 Biotin carboxylase C-terminal domain J164_00653 SM00342 helix_turn_helix, arabinose operon control protein J164_00655 SM00234 in StAR and phosphatidylcholine transfer protein J164_00659 SM00883 Chaperonin 10 Kd subunit J164_00670 SM00944 Pro-kumamolisin, activation domain J164_00673 SM00867 YceI-like domain J164_00684 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. J164_00686 SM00345 helix_turn_helix gluconate operon transcriptional repressor J164_00686 SM00895 J164_00686 J164_00690 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_00690 SM00331 Sigma factor PP2C-like phosphatases J164_00698 SM00342 helix_turn_helix, arabinose operon control protein J164_00710 SM00267 diguanylate cyclase J164_00715 SM00062 Bacterial periplasmic substrate-binding proteins J164_00724 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain J164_00724 SM01232 J164_00724 J164_00726 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J164_00729 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J164_00729 SM00091 PAS domain J164_00729 SM00267 diguanylate cyclase J164_00730 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_00730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_00730 SM01049 J164_00730 J164_00731 SM00637 J164_00731 J164_00733 SM00267 diguanylate cyclase J164_00739 SM00448 cheY-homologous receiver domain J164_00739 SM00850 LytTr DNA-binding domain J164_00755 SM00382 ATPases associated with a variety of cellular activities J164_00755 SM01086 C-terminal, D2-small domain, of ClpB protein J164_00761 SM00267 diguanylate cyclase J164_00762 SM01263 J164_00762 J164_00765 SM00564 beta-propeller repeat J164_00766 SM00062 Bacterial periplasmic substrate-binding proteins J164_00766 SM00248 ankyrin repeats J164_00769 SM00829 Enoylreductase J164_00771 SM00382 ATPases associated with a variety of cellular activities J164_00773 SM00268 Actin J164_00778 SM00710 Parallel beta-helix repeats J164_00781 SM00936 Penicillin-binding protein 5, C-terminal domain J164_00785 SM00729 Elongator protein 3, MiaB family, Radical SAM J164_00786 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J164_00786 SM00245 tail specific protease J164_00797 SM01350 J164_00797 J164_00799 SM00749 bacterial OsmY and nodulation domain J164_00800 SM00387 Histidine kinase-like ATPases J164_00800 SM00388 His Kinase A (phosphoacceptor) domain J164_00801 SM00448 cheY-homologous receiver domain J164_00802 SM00387 Histidine kinase-like ATPases J164_00802 SM00388 His Kinase A (phosphoacceptor) domain J164_00802 SM00448 cheY-homologous receiver domain J164_00808 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. J164_00813 SM00382 ATPases associated with a variety of cellular activities J164_00829 SM00345 helix_turn_helix gluconate operon transcriptional repressor J164_00829 SM00866 J164_00829 J164_00831 SM00354 helix_turn _helix lactose operon repressor J164_00845 SM00849 Metallo-beta-lactamase superfamily J164_00846 SM00342 helix_turn_helix, arabinose operon control protein J164_00848 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_00848 SM00387 Histidine kinase-like ATPases J164_00848 SM00388 His Kinase A (phosphoacceptor) domain J164_00849 SM00448 cheY-homologous receiver domain J164_00849 SM00862 Transcriptional regulatory protein, C terminal J164_00853 SM00829 Enoylreductase J164_00856 SM00345 helix_turn_helix gluconate operon transcriptional repressor J164_00860 SM00382 ATPases associated with a variety of cellular activities J164_00873 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J164_00879 SM00387 Histidine kinase-like ATPases J164_00879 SM00388 His Kinase A (phosphoacceptor) domain J164_00880 SM00448 cheY-homologous receiver domain J164_00880 SM00862 Transcriptional regulatory protein, C terminal J164_00904 SM00842 Cell division protein FtsA J164_00905 SM00864 Tubulin/FtsZ family, GTPase domain J164_00905 SM00865 Tubulin/FtsZ family, C-terminal domain J164_00909 SM00957 SecA DEAD-like domain J164_00909 SM00958 SecA preprotein cross-linking domain J164_00915 SM00829 Enoylreductase J164_00916 SM00944 Pro-kumamolisin, activation domain J164_00919 SM00642 Alpha-amylase domain J164_00926 SM00996 S-adenosyl-L-homocysteine hydrolase J164_00926 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain J164_00951 SM00382 ATPases associated with a variety of cellular activities J164_00955 SM00382 ATPases associated with a variety of cellular activities J164_00957 SM00448 cheY-homologous receiver domain J164_00957 SM00862 Transcriptional regulatory protein, C terminal J164_00958 SM00387 Histidine kinase-like ATPases J164_00958 SM00388 His Kinase A (phosphoacceptor) domain J164_00968 SM00382 ATPases associated with a variety of cellular activities J164_00970 SM00382 ATPases associated with a variety of cellular activities J164_00983 SM00382 ATPases associated with a variety of cellular activities J164_00986 SM00650 Ribosomal RNA adenine dimethylases J164_00991 SM00108 Bulb-type mannose-specific lectin J164_01000 SM00345 helix_turn_helix gluconate operon transcriptional repressor J164_01000 SM00895 J164_01000 J164_01007 SM00347 helix_turn_helix multiple antibiotic resistance protein J164_01019 SM00448 cheY-homologous receiver domain J164_01020 SM00387 Histidine kinase-like ATPases J164_01020 SM00388 His Kinase A (phosphoacceptor) domain J164_01020 SM00448 cheY-homologous receiver domain J164_01021 SM00421 helix_turn_helix, Lux Regulon J164_01034 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs J164_01034 SM00475 5'-3' exonuclease J164_01040 SM01002 Alanine dehydrogenase/PNT, C-terminal domain J164_01040 SM01003 Alanine dehydrogenase/PNT, N-terminal domain J164_01064 SM00852 Probable molybdopterin binding domain J164_01065 SM00028 Tetratricopeptide repeats J164_01066 SM00937 J164_01066 J164_01068 SM00028 Tetratricopeptide repeats J164_01072 SM01400 J164_01072 J164_01082 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. J164_01082 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. J164_01083 SM00649 Ribosomal protein L11/L12 J164_01089 SM00663 RNA polymerase I subunit A N-terminus J164_01092 SM00838 Elongation factor G C-terminus J164_01092 SM00889 Elongation factor G, domain IV J164_01094 SM01403 J164_01094 J164_01098 SM01382 J164_01098 J164_01098 SM01383 J164_01098 J164_01101 SM00322 K homology RNA-binding domain J164_01105 SM01374 J164_01105 J164_01106 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. J164_01118 SM00363 S4 RNA-binding domain J164_01118 SM01390 J164_01118 J164_01119 SM00662 RNA polymerases D J164_01127 SM00838 Elongation factor G C-terminus J164_01133 SM00829 Enoylreductase J164_01142 SM00382 ATPases associated with a variety of cellular activities J164_01144 SM00829 Enoylreductase J164_01149 SM00855 Phosphoglycerate mutase family J164_01160 SM00014 Acid phosphatase homologues J164_01164 SM00091 PAS domain J164_01164 SM00387 Histidine kinase-like ATPases J164_01164 SM00388 His Kinase A (phosphoacceptor) domain J164_01165 SM00448 cheY-homologous receiver domain J164_01165 SM00862 Transcriptional regulatory protein, C terminal J164_01169 SM01329 J164_01169 J164_01203 SM00387 Histidine kinase-like ATPases J164_01204 SM00091 PAS domain J164_01208 SM00382 ATPases associated with a variety of cellular activities J164_01208 SM00994 ClpX C4-type zinc finger J164_01208 SM01086 C-terminal, D2-small domain, of ClpB protein J164_01209 SM00382 ATPases associated with a variety of cellular activities J164_01209 SM00464 Found in ATP-dependent protease La (LON) J164_01210 SM00411 bacterial (prokaryotic) histone like domain J164_01216 SM00257 Lysin motif J164_01217 SM00849 Metallo-beta-lactamase superfamily J164_01220 SM00479 J164_01220 J164_01221 SM00331 Sigma factor PP2C-like phosphatases J164_01221 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain J164_01226 SM00849 Metallo-beta-lactamase superfamily J164_01227 SM00729 Elongator protein 3, MiaB family, Radical SAM J164_01240 SM00382 ATPases associated with a variety of cellular activities J164_01242 SM00493 J164_01242 J164_01245 SM00460 Transglutaminase/protease-like homologues J164_01247 SM00382 ATPases associated with a variety of cellular activities J164_01256 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. J164_01257 SM00822 J164_01257 J164_01259 SM00825 Beta-ketoacyl synthase J164_01266 SM00382 ATPases associated with a variety of cellular activities J164_01275 SM01359 J164_01275 J164_01275 SM01360 J164_01275 J164_01282 SM00271 DnaJ molecular chaperone homology domain J164_01284 SM00448 cheY-homologous receiver domain J164_01286 SM00244 prohibitin homologues J164_01287 SM00244 prohibitin homologues J164_01288 SM01321 J164_01288 J164_01289 SM00788 Adenylosuccinate synthetase J164_01292 SM00822 J164_01292 J164_01302 SM00220 Serine/Threonine protein kinases, catalytic domain J164_01306 SM00855 Phosphoglycerate mutase family J164_01317 SM00052 Putative diguanylate phosphodiesterase J164_01318 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J164_01320 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J164_01321 SM01092 CO dehydrogenase flavoprotein C-terminal domain J164_01324 SM00974 J164_01324 J164_01328 SM00966 SpoVT / AbrB like domain J164_01332 SM00481 DNA polymerase alpha chain like domain J164_01334 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J164_01341 SM00091 PAS domain J164_01341 SM00342 helix_turn_helix, arabinose operon control protein J164_01346 SM01060 J164_01346 J164_01358 SM00448 cheY-homologous receiver domain J164_01358 SM00862 Transcriptional regulatory protein, C terminal J164_01359 SM00387 Histidine kinase-like ATPases J164_01359 SM00388 His Kinase A (phosphoacceptor) domain J164_01366 SM00421 helix_turn_helix, Lux Regulon J164_01366 SM00448 cheY-homologous receiver domain J164_01369 SM00478 endonuclease III J164_01373 SM00244 prohibitin homologues J164_01391 SM00904 Riboflavin kinase J164_01400 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J164_01401 SM00382 ATPases associated with a variety of cellular activities J164_01403 SM00862 Transcriptional regulatory protein, C terminal J164_01404 SM00342 helix_turn_helix, arabinose operon control protein J164_01411 SM00387 Histidine kinase-like ATPases J164_01411 SM00388 His Kinase A (phosphoacceptor) domain J164_01412 SM00387 Histidine kinase-like ATPases J164_01412 SM00388 His Kinase A (phosphoacceptor) domain J164_01412 SM00448 cheY-homologous receiver domain J164_01417 SM00387 Histidine kinase-like ATPases J164_01417 SM00388 His Kinase A (phosphoacceptor) domain J164_01417 SM00448 cheY-homologous receiver domain J164_01419 SM00138 Methyltransferase, chemotaxis proteins J164_01420 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J164_01420 SM00387 Histidine kinase-like ATPases J164_01420 SM00388 His Kinase A (phosphoacceptor) domain J164_01420 SM00448 cheY-homologous receiver domain J164_01421 SM00091 PAS domain J164_01421 SM00387 Histidine kinase-like ATPases J164_01421 SM00388 His Kinase A (phosphoacceptor) domain J164_01422 SM00448 cheY-homologous receiver domain J164_01424 SM00813 Alpha-L-arabinofuranosidase C-terminus J164_01427 SM00382 ATPases associated with a variety of cellular activities J164_01427 SM00962 SRP54-type protein, GTPase domain J164_01427 SM00963 SRP54-type protein, helical bundle domain J164_01441 SM00533 DNA-binding domain of DNA mismatch repair MUTS family J164_01441 SM00534 ATPase domain of DNA mismatch repair MUTS family J164_01446 SM00812 Alpha-L-fucosidase J164_01451 SM00530 Helix-turn-helix XRE-family like proteins J164_01461 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J164_01462 SM00838 Elongation factor G C-terminus J164_01465 SM00358 Double-stranded RNA binding motif J164_01465 SM00535 Ribonuclease III family J164_01468 SM00448 cheY-homologous receiver domain J164_01470 SM01118 J164_01470 J164_01477 SM00357 Cold shock protein domain J164_01480 SM00487 DEAD-like helicases superfamily J164_01480 SM00490 helicase superfamily c-terminal domain J164_01486 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J164_01486 SM00267 diguanylate cyclase J164_01490 SM00869 Autotransporter beta-domain J164_01491 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J164_01492 SM00671 Sel1-like repeats. J164_01492 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. J164_01531 SM00382 ATPases associated with a variety of cellular activities J164_01548 SM00481 DNA polymerase alpha chain like domain J164_01556 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J164_01562 SM00267 diguanylate cyclase J164_01567 SM00972 Spore Coat Protein U domain J164_01570 SM00972 Spore Coat Protein U domain J164_01572 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J164_01576 SM01172 J164_01576 J164_01577 SM00710 Parallel beta-helix repeats J164_01577 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses J164_01584 SM00434 DNA Topoisomerase IV J164_01585 SM00342 helix_turn_helix, arabinose operon control protein J164_01586 SM00347 helix_turn_helix multiple antibiotic resistance protein J164_01591 SM01217 J164_01591 J164_01592 SM00631 J164_01592 J164_01598 SM00347 helix_turn_helix multiple antibiotic resistance protein J164_01602 SM00382 ATPases associated with a variety of cellular activities J164_01605 SM00947 Carbonic anhydrase J164_01608 SM00357 Cold shock protein domain J164_01631 SM00267 diguanylate cyclase J164_01633 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J164_01633 SM00267 diguanylate cyclase J164_01669 SM00271 DnaJ molecular chaperone homology domain J164_01678 SM00382 ATPases associated with a variety of cellular activities J164_01683 SM00861 Transketolase, pyrimidine binding domain J164_01685 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. J164_01689 SM00116 Domain in cystathionine beta-synthase and other proteins. J164_01689 SM01091 Transporter associated domain J164_01695 SM00382 ATPases associated with a variety of cellular activities J164_01696 SM00345 helix_turn_helix gluconate operon transcriptional repressor J164_01700 SM00984 UDP binding domain J164_01704 SM00354 helix_turn _helix lactose operon repressor J164_01708 SM01018 B12 binding domain J164_01710 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor J164_01714 SM00316 Ribosomal protein S1-like RNA-binding domain J164_01714 SM00357 Cold shock protein domain J164_01714 SM00955 J164_01714 J164_01716 SM00967 RNA 2'-O ribose methyltransferase substrate binding J164_01717 SM00267 diguanylate cyclase J164_01718 SM00479 J164_01718 J164_01721 SM00382 ATPases associated with a variety of cellular activities J164_01728 SM00947 Carbonic anhydrase J164_01730 SM00478 endonuclease III J164_01735 SM00450 Rhodanese Homology Domain J164_01737 SM00644 J164_01737 J164_01741 SM00382 ATPases associated with a variety of cellular activities J164_01742 SM00981 J164_01742 J164_01747 SM00479 J164_01747 J164_01752 SM00947 Carbonic anhydrase J164_01761 SM00421 helix_turn_helix, Lux Regulon J164_01761 SM00448 cheY-homologous receiver domain J164_01773 SM00968 SMC proteins Flexible Hinge Domain J164_01774 SM00771 ZipA, C-terminal domain (FtsZ-binding) J164_01777 SM00292 breast cancer carboxy-terminal domain J164_01777 SM00532 Ligase N family J164_01781 SM00434 DNA Topoisomerase IV J164_01782 SM00564 beta-propeller repeat J164_01789 SM00345 helix_turn_helix gluconate operon transcriptional repressor J164_01789 SM00866 J164_01789 J164_01794 SM00240 Forkhead associated domain J164_01798 SM00830 Chorismate mutase type II J164_01807 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_01807 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_01809 SM00347 helix_turn_helix multiple antibiotic resistance protein J164_01810 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J164_01810 SM00091 PAS domain J164_01810 SM00387 Histidine kinase-like ATPases J164_01810 SM00388 His Kinase A (phosphoacceptor) domain J164_01810 SM00448 cheY-homologous receiver domain J164_01811 SM00448 cheY-homologous receiver domain J164_01812 SM00382 ATPases associated with a variety of cellular activities J164_01813 SM00091 PAS domain J164_01813 SM00387 Histidine kinase-like ATPases J164_01813 SM00388 His Kinase A (phosphoacceptor) domain J164_01813 SM00448 cheY-homologous receiver domain J164_01844 SM00729 Elongator protein 3, MiaB family, Radical SAM J164_01846 SM00382 ATPases associated with a variety of cellular activities J164_01851 SM00116 Domain in cystathionine beta-synthase and other proteins. J164_01851 SM01091 Transporter associated domain J164_01856 SM00387 Histidine kinase-like ATPases J164_01856 SM00433 TopoisomeraseII J164_01861 SM01192 J164_01861 J164_01861 SM01193 J164_01861 J164_01866 SM00463 Small MutS-related domain J164_01870 SM00257 Lysin motif J164_01873 SM01103 J164_01873 J164_01875 SM00382 ATPases associated with a variety of cellular activities J164_01883 SM00382 ATPases associated with a variety of cellular activities J164_01885 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain J164_01888 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J164_01888 SM00091 PAS domain J164_01888 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_01898 SM00670 Large family of predicted nucleotide-binding domains J164_01902 SM01130 J164_01902 J164_01907 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J164_01916 SM00758 J164_01916 J164_01923 SM00646 J164_01923 J164_01939 SM00052 Putative diguanylate phosphodiesterase J164_01939 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J164_01939 SM00267 diguanylate cyclase J164_01941 SM00448 cheY-homologous receiver domain J164_01942 SM00387 Histidine kinase-like ATPases J164_01944 SM00014 Acid phosphatase homologues J164_01959 SM00912 haemagglutination activity domain J164_01969 SM00100 Cyclic nucleotide-monophosphate binding domain J164_01969 SM00419 helix_turn_helix, cAMP Regulatory protein J164_01984 SM01007 Class II Aldolase and Adducin N-terminal domain J164_01993 SM00841 Elongation factor P, C-terminal J164_01993 SM01185 J164_01993 J164_01994 SM00822 J164_01994 J164_01998 SM00899 J164_01998 J164_02005 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain J164_02007 SM00851 MGS-like domain J164_02007 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J164_02018 SM00850 LytTr DNA-binding domain J164_02019 SM00937 J164_02019 J164_02021 SM00448 cheY-homologous receiver domain J164_02021 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J164_02022 SM00073 Histidine Phosphotransfer domain J164_02022 SM00387 Histidine kinase-like ATPases J164_02022 SM00388 His Kinase A (phosphoacceptor) domain J164_02022 SM00448 cheY-homologous receiver domain J164_02027 SM00966 SpoVT / AbrB like domain J164_02031 SM00052 Putative diguanylate phosphodiesterase J164_02031 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J164_02031 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J164_02031 SM00091 PAS domain J164_02031 SM00267 diguanylate cyclase J164_02032 SM00448 cheY-homologous receiver domain J164_02034 SM00138 Methyltransferase, chemotaxis proteins J164_02035 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_02035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_02036 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_02036 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_02037 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_02037 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_02038 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_02038 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_02039 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_02039 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_02040 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_02040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_02041 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_02043 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_02043 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_02044 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_02044 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_02044 SM01049 J164_02044 J164_02046 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_02046 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_02047 SM00073 Histidine Phosphotransfer domain J164_02047 SM00260 Two component signalling adaptor domain J164_02047 SM00387 Histidine kinase-like ATPases J164_02047 SM01231 J164_02047 J164_02048 SM00448 cheY-homologous receiver domain J164_02050 SM00260 Two component signalling adaptor domain J164_02056 SM00220 Serine/Threonine protein kinases, catalytic domain J164_02070 SM00530 Helix-turn-helix XRE-family like proteins J164_02075 SM00073 Histidine Phosphotransfer domain J164_02075 SM00260 Two component signalling adaptor domain J164_02075 SM00387 Histidine kinase-like ATPases J164_02075 SM01231 J164_02075 J164_02077 SM00448 cheY-homologous receiver domain J164_02080 SM00382 ATPases associated with a variety of cellular activities J164_02080 SM00962 SRP54-type protein, GTPase domain J164_02083 SM00052 Putative diguanylate phosphodiesterase J164_02083 SM00267 diguanylate cyclase J164_02084 SM00267 diguanylate cyclase J164_02085 SM00267 diguanylate cyclase J164_02096 SM00382 ATPases associated with a variety of cellular activities J164_02107 SM00822 J164_02107 J164_02112 SM00382 ATPases associated with a variety of cellular activities J164_02113 SM00448 cheY-homologous receiver domain J164_02115 SM00421 helix_turn_helix, Lux Regulon J164_02115 SM00448 cheY-homologous receiver domain J164_02123 SM00047 Lysozyme subfamily 2 J164_02132 SM00260 Two component signalling adaptor domain J164_02132 SM00448 cheY-homologous receiver domain J164_02133 SM00858 J164_02133 J164_02136 SM00387 Histidine kinase-like ATPases J164_02137 SM00052 Putative diguanylate phosphodiesterase J164_02137 SM00267 diguanylate cyclase J164_02137 SM00448 cheY-homologous receiver domain J164_02138 SM00091 PAS domain J164_02138 SM00387 Histidine kinase-like ATPases J164_02139 SM00052 Putative diguanylate phosphodiesterase J164_02139 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J164_02139 SM00091 PAS domain J164_02139 SM00267 diguanylate cyclase J164_02141 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_02146 SM00382 ATPases associated with a variety of cellular activities J164_02146 SM01086 C-terminal, D2-small domain, of ClpB protein J164_02147 SM00316 Ribosomal protein S1-like RNA-binding domain J164_02151 SM00382 ATPases associated with a variety of cellular activities J164_02151 SM00843 J164_02151 J164_02155 SM00382 ATPases associated with a variety of cellular activities J164_02162 SM00562 J164_02162 J164_02164 SM00028 Tetratricopeptide repeats J164_02167 SM00564 beta-propeller repeat J164_02168 SM00382 ATPases associated with a variety of cellular activities J164_02169 SM00852 Probable molybdopterin binding domain J164_02170 SM00450 Rhodanese Homology Domain J164_02179 SM00852 Probable molybdopterin binding domain J164_02184 SM00529 Helix-turn-helix diphteria tox regulatory element J164_02186 SM00479 J164_02186 J164_02200 SM00316 Ribosomal protein S1-like RNA-binding domain J164_02200 SM00732 Likely ribonuclease with RNase H fold. J164_02201 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J164_02201 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J164_02201 SM00091 PAS domain J164_02201 SM00387 Histidine kinase-like ATPases J164_02201 SM00388 His Kinase A (phosphoacceptor) domain J164_02201 SM00448 cheY-homologous receiver domain J164_02202 SM00448 cheY-homologous receiver domain J164_02219 SM00382 ATPases associated with a variety of cellular activities J164_02230 SM00382 ATPases associated with a variety of cellular activities J164_02232 SM00849 Metallo-beta-lactamase superfamily J164_02235 SM00382 ATPases associated with a variety of cellular activities J164_02238 SM00226 Low molecular weight phosphatase family J164_02240 SM00278 Helix-hairpin-helix DNA-binding motif class 1 J164_02240 SM00465 GIY-YIG type nucleases (URI domain) J164_02246 SM00823 Phosphopantetheine attachment site J164_02253 SM00984 UDP binding domain J164_02257 SM00450 Rhodanese Homology Domain J164_02258 SM00421 helix_turn_helix, Lux Regulon J164_02258 SM00448 cheY-homologous receiver domain J164_02259 SM00316 Ribosomal protein S1-like RNA-binding domain J164_02260 SM00363 S4 RNA-binding domain J164_02268 SM01034 Sensors of blue-light using FAD J164_02288 SM00448 cheY-homologous receiver domain J164_02288 SM00850 LytTr DNA-binding domain J164_02291 SM00869 Autotransporter beta-domain J164_02295 SM00387 Histidine kinase-like ATPases J164_02295 SM00388 His Kinase A (phosphoacceptor) domain J164_02296 SM00421 helix_turn_helix, Lux Regulon J164_02296 SM00448 cheY-homologous receiver domain J164_02297 SM00869 Autotransporter beta-domain J164_02298 SM00052 Putative diguanylate phosphodiesterase J164_02303 SM01012 J164_02303 J164_02312 SM00342 helix_turn_helix, arabinose operon control protein J164_02313 SM00387 Histidine kinase-like ATPases J164_02314 SM00421 helix_turn_helix, Lux Regulon J164_02314 SM00448 cheY-homologous receiver domain J164_02315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_02322 SM00530 Helix-turn-helix XRE-family like proteins J164_02336 SM00966 SpoVT / AbrB like domain J164_02341 SM00965 Secretin and TonB N terminus short domain J164_02346 SM00736 Dystroglycan-type cadherin-like domains. J164_02351 SM00382 ATPases associated with a variety of cellular activities J164_02361 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain J164_02361 SM00437 Bacterial DNA topoisomerase I DNA-binding domain J164_02361 SM00493 J164_02361 J164_02386 SM00342 helix_turn_helix, arabinose operon control protein J164_02395 SM00487 DEAD-like helicases superfamily J164_02446 SM00116 Domain in cystathionine beta-synthase and other proteins. J164_02446 SM01240 J164_02446 J164_02451 SM00822 J164_02451 J164_02453 SM00028 Tetratricopeptide repeats J164_02455 SM00411 bacterial (prokaryotic) histone like domain J164_02456 SM00316 Ribosomal protein S1-like RNA-binding domain J164_02472 SM00354 helix_turn _helix lactose operon repressor J164_02477 SM00363 S4 RNA-binding domain J164_02482 SM00382 ATPases associated with a variety of cellular activities J164_02492 SM00357 Cold shock protein domain J164_02493 SM00382 ATPases associated with a variety of cellular activities J164_02494 SM00382 ATPases associated with a variety of cellular activities J164_02500 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J164_02502 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase J164_02505 SM00859 Semialdehyde dehydrogenase, NAD binding domain J164_02513 SM00840 J164_02513 J164_02517 SM01234 J164_02517 J164_02525 SM00849 Metallo-beta-lactamase superfamily J164_02530 SM00656 J164_02530 J164_02538 SM00841 Elongation factor P, C-terminal J164_02538 SM01185 J164_02538 J164_02540 SM00052 Putative diguanylate phosphodiesterase J164_02540 SM00267 diguanylate cyclase J164_02540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_02547 SM00382 ATPases associated with a variety of cellular activities J164_02548 SM00487 DEAD-like helicases superfamily J164_02548 SM00490 helicase superfamily c-terminal domain J164_02553 SM00357 Cold shock protein domain J164_02554 SM01322 J164_02554 J164_02556 SM00052 Putative diguanylate phosphodiesterase J164_02556 SM00267 diguanylate cyclase J164_02559 SM00822 J164_02559 J164_02563 SM00853 MutL C terminal dimerisation domain J164_02563 SM01340 J164_02563 J164_02564 SM00646 J164_02564 J164_02571 SM00474 3'-5' exonuclease J164_02575 SM00528 Domain in histone-like proteins of HNS family J164_02593 SM00857 Resolvase, N terminal domain J164_02608 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J164_02608 SM00267 diguanylate cyclase J164_02609 SM00260 Two component signalling adaptor domain J164_02610 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_02610 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_02612 SM00487 DEAD-like helicases superfamily J164_02612 SM00490 helicase superfamily c-terminal domain J164_02623 SM00729 Elongator protein 3, MiaB family, Radical SAM J164_02628 SM00116 Domain in cystathionine beta-synthase and other proteins. J164_02628 SM01091 Transporter associated domain J164_02634 SM00382 ATPases associated with a variety of cellular activities J164_02640 SM01230 J164_02640 J164_02642 SM01230 J164_02642 J164_02644 SM00267 diguanylate cyclase J164_02644 SM00448 cheY-homologous receiver domain J164_02654 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J164_02654 SM00091 PAS domain J164_02654 SM00387 Histidine kinase-like ATPases J164_02654 SM00388 His Kinase A (phosphoacceptor) domain J164_02654 SM00448 cheY-homologous receiver domain J164_02654 SM01079 J164_02654 J164_02655 SM00448 cheY-homologous receiver domain J164_02655 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J164_02661 SM00354 helix_turn _helix lactose operon repressor J164_02674 SM01323 J164_02674 J164_02677 SM00344 helix_turn_helix ASNC type J164_02692 SM00387 Histidine kinase-like ATPases J164_02702 SM00944 Pro-kumamolisin, activation domain J164_02713 SM01130 J164_02713 J164_02718 SM00342 helix_turn_helix, arabinose operon control protein J164_02719 SM00382 ATPases associated with a variety of cellular activities J164_02719 SM00962 SRP54-type protein, GTPase domain J164_02719 SM00963 SRP54-type protein, helical bundle domain J164_02720 SM00478 endonuclease III J164_02722 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J164_02722 SM00091 PAS domain J164_02722 SM00387 Histidine kinase-like ATPases J164_02722 SM00388 His Kinase A (phosphoacceptor) domain J164_02722 SM00448 cheY-homologous receiver domain J164_02725 SM00465 GIY-YIG type nucleases (URI domain) J164_02731 SM00507 HNH nucleases J164_02732 SM00861 Transketolase, pyrimidine binding domain J164_02737 SM00849 Metallo-beta-lactamase superfamily J164_02754 SM00422 helix_turn_helix, mercury resistance J164_02755 SM00411 bacterial (prokaryotic) histone like domain J164_02756 SM00873 B3/4 domain J164_02756 SM00874 tRNA synthetase B5 domain J164_02756 SM00896 Ferredoxin-fold anticodon binding domain J164_02762 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain J164_02763 SM00354 helix_turn _helix lactose operon repressor J164_02764 SM00642 Alpha-amylase domain J164_02771 SM00642 Alpha-amylase domain J164_02781 SM00382 ATPases associated with a variety of cellular activities J164_02793 SM00487 DEAD-like helicases superfamily J164_02793 SM00490 helicase superfamily c-terminal domain J164_02842 SM01001 AIR carboxylase J164_02846 SM00316 Ribosomal protein S1-like RNA-binding domain J164_02846 SM00322 K homology RNA-binding domain J164_02847 SM01387 J164_02847 J164_02851 SM00316 Ribosomal protein S1-like RNA-binding domain J164_02851 SM00322 K homology RNA-binding domain J164_02861 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J164_02862 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J164_02871 SM00822 J164_02871 J164_02874 SM00052 Putative diguanylate phosphodiesterase J164_02874 SM00267 diguanylate cyclase J164_02874 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_02888 SM00859 Semialdehyde dehydrogenase, NAD binding domain J164_02894 SM00257 Lysin motif J164_02900 SM00729 Elongator protein 3, MiaB family, Radical SAM J164_02913 SM01160 J164_02913 J164_02924 SM00098 Alkaline phosphatase homologues J164_02925 SM00977 TilS substrate C-terminal domain J164_02928 SM01351 J164_02928 J164_02935 SM00316 Ribosomal protein S1-like RNA-binding domain J164_02961 SM00382 ATPases associated with a variety of cellular activities J164_02968 SM00448 cheY-homologous receiver domain J164_02968 SM00862 Transcriptional regulatory protein, C terminal J164_02969 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_02969 SM00387 Histidine kinase-like ATPases J164_02969 SM00388 His Kinase A (phosphoacceptor) domain J164_02975 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J164_02975 SM00267 diguanylate cyclase J164_02976 SM00363 S4 RNA-binding domain J164_02977 SM00052 Putative diguanylate phosphodiesterase J164_02977 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J164_02977 SM00091 PAS domain J164_02977 SM00267 diguanylate cyclase J164_02978 SM00487 DEAD-like helicases superfamily J164_02978 SM00490 helicase superfamily c-terminal domain J164_02987 SM00342 helix_turn_helix, arabinose operon control protein J164_02987 SM00478 endonuclease III J164_02987 SM01009 AlkA N-terminal domain J164_02991 SM00829 Enoylreductase J164_03005 SM00342 helix_turn_helix, arabinose operon control protein J164_03019 SM00645 Papain family cysteine protease J164_03020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_03020 SM00387 Histidine kinase-like ATPases J164_03020 SM00388 His Kinase A (phosphoacceptor) domain J164_03021 SM00448 cheY-homologous receiver domain J164_03021 SM00862 Transcriptional regulatory protein, C terminal J164_03024 SM00487 DEAD-like helicases superfamily J164_03024 SM00490 helicase superfamily c-terminal domain J164_03024 SM00982 J164_03024 J164_03024 SM01058 CarD-like/TRCF domain J164_03031 SM00073 Histidine Phosphotransfer domain J164_03031 SM00260 Two component signalling adaptor domain J164_03031 SM00387 Histidine kinase-like ATPases J164_03031 SM01231 J164_03031 J164_03032 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_03032 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_03033 SM00260 Two component signalling adaptor domain J164_03034 SM00052 Putative diguanylate phosphodiesterase J164_03034 SM00448 cheY-homologous receiver domain J164_03035 SM00138 Methyltransferase, chemotaxis proteins J164_03036 SM00448 cheY-homologous receiver domain J164_03037 SM00155 Phospholipase D. Active site motifs. J164_03040 SM00855 Phosphoglycerate mutase family J164_03050 SM00248 ankyrin repeats J164_03060 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J164_03061 SM01092 CO dehydrogenase flavoprotein C-terminal domain J164_03063 SM00829 Enoylreductase J164_03064 SM00267 diguanylate cyclase J164_03077 SM00732 Likely ribonuclease with RNase H fold. J164_03084 SM00382 ATPases associated with a variety of cellular activities J164_03087 SM00411 bacterial (prokaryotic) histone like domain J164_03093 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain J164_03096 SM00382 ATPases associated with a variety of cellular activities J164_03102 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. J164_03103 SM00671 Sel1-like repeats. J164_03109 SM00054 EF-hand, calcium binding motif J164_03127 SM00116 Domain in cystathionine beta-synthase and other proteins. J164_03131 SM00382 ATPases associated with a variety of cellular activities J164_03140 SM00924 MgtE intracellular N domain J164_03146 SM00656 J164_03146 J164_03148 SM00421 helix_turn_helix, Lux Regulon J164_03154 SM00849 Metallo-beta-lactamase superfamily J164_03156 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. J164_03160 SM00422 helix_turn_helix, mercury resistance J164_03187 SM00342 helix_turn_helix, arabinose operon control protein J164_03189 SM00387 Histidine kinase-like ATPases J164_03189 SM00388 His Kinase A (phosphoacceptor) domain J164_03189 SM00448 cheY-homologous receiver domain J164_03190 SM00387 Histidine kinase-like ATPases J164_03190 SM00388 His Kinase A (phosphoacceptor) domain J164_03190 SM00448 cheY-homologous receiver domain J164_03192 SM00387 Histidine kinase-like ATPases J164_03192 SM00388 His Kinase A (phosphoacceptor) domain J164_03192 SM00448 cheY-homologous receiver domain J164_03193 SM00867 YceI-like domain J164_03195 SM00867 YceI-like domain J164_03207 SM00116 Domain in cystathionine beta-synthase and other proteins. J164_03213 SM00028 Tetratricopeptide repeats J164_03233 SM00812 Alpha-L-fucosidase J164_03234 SM00636 J164_03234 J164_03237 SM00758 J164_03237 J164_03237 SM01217 J164_03237 J164_03243 SM01149 J164_03243 J164_03250 SM00369 Leucine-rich repeats, typical (most populated) subfamily J164_03254 SM00260 Two component signalling adaptor domain J164_03256 SM00073 Histidine Phosphotransfer domain J164_03256 SM00260 Two component signalling adaptor domain J164_03256 SM00387 Histidine kinase-like ATPases J164_03256 SM00448 cheY-homologous receiver domain J164_03256 SM01231 J164_03256 J164_03257 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_03258 SM00260 Two component signalling adaptor domain J164_03259 SM00448 cheY-homologous receiver domain J164_03260 SM00448 cheY-homologous receiver domain J164_03265 SM00491 J164_03265 J164_03270 SM00954 Region found in RelA / SpoT proteins J164_03279 SM00382 ATPases associated with a variety of cellular activities J164_03279 SM00487 DEAD-like helicases superfamily J164_03279 SM00490 helicase superfamily c-terminal domain J164_03279 SM00847 Helicase associated domain (HA2) Add an annotation J164_03281 SM00341 Helicase and RNase D C-terminal J164_03281 SM00487 DEAD-like helicases superfamily J164_03281 SM00490 helicase superfamily c-terminal domain J164_03281 SM00956 J164_03281 J164_03283 SM00448 cheY-homologous receiver domain J164_03288 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_03288 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_03291 SM00448 cheY-homologous receiver domain J164_03292 SM00091 PAS domain J164_03292 SM00911 HWE histidine kinase J164_03303 SM00382 ATPases associated with a variety of cellular activities J164_03306 SM00278 Helix-hairpin-helix DNA-binding motif class 1 J164_03313 SM00834 Putative regulatory protein J164_03322 SM00382 ATPases associated with a variety of cellular activities J164_03342 SM00855 Phosphoglycerate mutase family J164_03353 SM00382 ATPases associated with a variety of cellular activities J164_03353 SM01086 C-terminal, D2-small domain, of ClpB protein J164_03354 SM00382 ATPases associated with a variety of cellular activities J164_03356 SM00062 Bacterial periplasmic substrate-binding proteins J164_03371 SM00564 beta-propeller repeat J164_03372 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_03393 SM01126 J164_03393 J164_03395 SM00881 CoA binding domain J164_03397 SM00387 Histidine kinase-like ATPases J164_03397 SM00388 His Kinase A (phosphoacceptor) domain J164_03398 SM00382 ATPases associated with a variety of cellular activities J164_03398 SM00448 cheY-homologous receiver domain J164_03413 SM00387 Histidine kinase-like ATPases J164_03413 SM00388 His Kinase A (phosphoacceptor) domain J164_03414 SM00448 cheY-homologous receiver domain J164_03414 SM00862 Transcriptional regulatory protein, C terminal J164_03417 SM00642 Alpha-amylase domain J164_03418 SM00528 Domain in histone-like proteins of HNS family J164_03420 SM00318 Staphylococcal nuclease homologues J164_03435 SM00387 Histidine kinase-like ATPases J164_03435 SM00388 His Kinase A (phosphoacceptor) domain J164_03436 SM00448 cheY-homologous receiver domain J164_03438 SM00646 J164_03438 J164_03447 SM00530 Helix-turn-helix XRE-family like proteins J164_03451 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J164_03451 SM00387 Histidine kinase-like ATPases J164_03455 SM00255 Toll - interleukin 1 - resistance J164_03459 SM00869 Autotransporter beta-domain J164_03469 SM00354 helix_turn _helix lactose operon repressor J164_03475 SM00967 RNA 2'-O ribose methyltransferase substrate binding J164_03496 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J164_03496 SM00387 Histidine kinase-like ATPases J164_03502 SM00506 Appr-1"-p processing enzyme J164_03511 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J164_03516 SM00849 Metallo-beta-lactamase superfamily J164_03519 SM00382 ATPases associated with a variety of cellular activities J164_03531 SM00861 Transketolase, pyrimidine binding domain J164_03534 SM00028 Tetratricopeptide repeats J164_03534 SM00327 von Willebrand factor (vWF) type A domain J164_03535 SM00327 von Willebrand factor (vWF) type A domain J164_03538 SM00382 ATPases associated with a variety of cellular activities J164_03540 SM00965 Secretin and TonB N terminus short domain J164_03551 SM00487 DEAD-like helicases superfamily J164_03551 SM00490 helicase superfamily c-terminal domain J164_03553 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J164_03553 SM00954 Region found in RelA / SpoT proteins J164_03554 SM01409 J164_03554 J164_03555 SM00072 Guanylate kinase homologues. J164_03560 SM00729 Elongator protein 3, MiaB family, Radical SAM J164_03566 SM01011 Aminopeptidase P, N-terminal domain J164_03581 SM00028 Tetratricopeptide repeats J164_03581 SM00382 ATPases associated with a variety of cellular activities J164_03581 SM00421 helix_turn_helix, Lux Regulon J164_03595 SM00464 Found in ATP-dependent protease La (LON) J164_03605 SM00342 helix_turn_helix, arabinose operon control protein J164_03606 SM00862 Transcriptional regulatory protein, C terminal J164_03610 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_03616 SM00917 LeuA allosteric (dimerisation) domain J164_03617 SM01329 J164_03617 J164_03621 SM00267 diguanylate cyclase J164_03631 SM00919 Malic enzyme, NAD binding domain J164_03631 SM01274 J164_03631 J164_03634 SM00387 Histidine kinase-like ATPases J164_03634 SM00388 His Kinase A (phosphoacceptor) domain J164_03634 SM00448 cheY-homologous receiver domain J164_03642 SM00421 helix_turn_helix, Lux Regulon J164_03642 SM00448 cheY-homologous receiver domain J164_03644 SM00387 Histidine kinase-like ATPases J164_03644 SM00388 His Kinase A (phosphoacceptor) domain J164_03645 SM00448 cheY-homologous receiver domain J164_03645 SM00862 Transcriptional regulatory protein, C terminal J164_03649 SM00822 J164_03649 J164_03650 SM00354 helix_turn _helix lactose operon repressor J164_03653 SM00642 Alpha-amylase domain J164_03655 SM01154 J164_03655 J164_03662 SM00450 Rhodanese Homology Domain J164_03675 SM00028 Tetratricopeptide repeats J164_03690 SM00345 helix_turn_helix gluconate operon transcriptional repressor J164_03690 SM00866 J164_03690 J164_03702 SM00382 ATPases associated with a variety of cellular activities J164_03707 SM01211 J164_03707 J164_03720 SM00656 J164_03720 J164_03726 SM00528 Domain in histone-like proteins of HNS family J164_03729 SM00382 ATPases associated with a variety of cellular activities J164_03735 SM00882 Coenzyme A transferase J164_03736 SM00882 Coenzyme A transferase J164_03739 SM00984 UDP binding domain J164_03744 SM00893 Electron transfer flavoprotein domain J164_03745 SM00893 Electron transfer flavoprotein domain J164_03759 SM00382 ATPases associated with a variety of cellular activities J164_03762 SM00116 Domain in cystathionine beta-synthase and other proteins. J164_03769 SM00487 DEAD-like helicases superfamily J164_03769 SM00490 helicase superfamily c-terminal domain J164_03776 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J164_03783 SM00825 Beta-ketoacyl synthase J164_03798 SM00382 ATPases associated with a variety of cellular activities J164_03802 SM00382 ATPases associated with a variety of cellular activities J164_03802 SM00387 Histidine kinase-like ATPases J164_03802 SM00448 cheY-homologous receiver domain J164_03805 SM00830 Chorismate mutase type II J164_03807 SM00382 ATPases associated with a variety of cellular activities J164_03821 SM00986 Uracil DNA glycosylase superfamily J164_03821 SM00987 UreE urease accessory protein, C-terminal domain J164_03827 SM00382 ATPases associated with a variety of cellular activities J164_03827 SM00930 J164_03827 J164_03831 SM00387 Histidine kinase-like ATPases J164_03831 SM00388 His Kinase A (phosphoacceptor) domain J164_03831 SM00448 cheY-homologous receiver domain J164_03841 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J164_03841 SM00091 PAS domain J164_03841 SM00387 Histidine kinase-like ATPases J164_03841 SM00388 His Kinase A (phosphoacceptor) domain J164_03841 SM00448 cheY-homologous receiver domain J164_03845 SM01005 Alanine racemase, C-terminal domain J164_03847 SM00344 helix_turn_helix ASNC type J164_03858 SM00382 ATPases associated with a variety of cellular activities J164_03860 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. J164_03861 SM00986 Uracil DNA glycosylase superfamily J164_03861 SM00987 UreE urease accessory protein, C-terminal domain J164_03862 SM00729 Elongator protein 3, MiaB family, Radical SAM J164_03875 SM00448 cheY-homologous receiver domain J164_03875 SM00850 LytTr DNA-binding domain J164_03876 SM00387 Histidine kinase-like ATPases J164_03883 SM00091 PAS domain J164_03883 SM00138 Methyltransferase, chemotaxis proteins J164_03883 SM00911 HWE histidine kinase J164_03884 SM00448 cheY-homologous receiver domain J164_03886 SM00382 ATPases associated with a variety of cellular activities J164_03886 SM00448 cheY-homologous receiver domain J164_03897 SM00382 ATPases associated with a variety of cellular activities J164_03912 SM00382 ATPases associated with a variety of cellular activities J164_03913 SM00631 J164_03913 J164_03921 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J164_03921 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_03922 SM00477 DNA/RNA non-specific endonuclease J164_03922 SM00892 DNA/RNA non-specific endonuclease J164_03953 SM00257 Lysin motif J164_03958 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain J164_03958 SM00437 Bacterial DNA topoisomerase I DNA-binding domain J164_03958 SM00493 J164_03958 J164_03969 SM00487 DEAD-like helicases superfamily J164_03969 SM00490 helicase superfamily c-terminal domain J164_03976 SM00986 Uracil DNA glycosylase superfamily J164_03976 SM00987 UreE urease accessory protein, C-terminal domain J164_03977 SM00448 cheY-homologous receiver domain J164_03979 SM00382 ATPases associated with a variety of cellular activities J164_03980 SM00487 DEAD-like helicases superfamily J164_03980 SM00490 helicase superfamily c-terminal domain J164_03982 SM00357 Cold shock protein domain J164_03982 SM00382 ATPases associated with a variety of cellular activities J164_03982 SM00959 Rho termination factor, N-terminal domain J164_03988 SM00487 DEAD-like helicases superfamily J164_03997 SM00257 Lysin motif J164_04003 SM01150 J164_04003 J164_04012 SM00644 J164_04012 J164_04014 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J164_04021 SM01217 J164_04021 J164_04022 SM00905 Dihydroneopterin aldolase J164_04027 SM00400 zinc finger J164_04027 SM00493 J164_04027 J164_04027 SM00766 DNA primase DnaG DnaB-binding J164_04049 SM00363 S4 RNA-binding domain J164_04058 SM00470 ParB-like nuclease domain J164_04062 SM01259 J164_04062 J164_04068 SM00836 DALR anticodon binding domain J164_04068 SM01016 Arginyl tRNA synthetase N terminal dom J164_04074 SM00823 Phosphopantetheine attachment site J164_04074 SM00824 Thioesterase J164_04081 SM00938 Nitrogen regulatory protein P-II J164_04083 SM00382 ATPases associated with a variety of cellular activities J164_04086 SM00052 Putative diguanylate phosphodiesterase J164_04094 SM00244 prohibitin homologues J164_04104 SM00448 cheY-homologous receiver domain J164_04104 SM00862 Transcriptional regulatory protein, C terminal J164_04105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J164_04105 SM00387 Histidine kinase-like ATPases J164_04105 SM00388 His Kinase A (phosphoacceptor) domain J164_04109 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J164_04118 SM01060 J164_04118 J164_04121 SM00421 helix_turn_helix, Lux Regulon J164_04121 SM00448 cheY-homologous receiver domain J164_04124 SM00382 ATPases associated with a variety of cellular activities J164_04133 SM00849 Metallo-beta-lactamase superfamily J164_04139 SM00960 Roadblock/LC7 domain J164_04152 SM00387 Histidine kinase-like ATPases J164_04152 SM00388 His Kinase A (phosphoacceptor) domain J164_04153 SM00448 cheY-homologous receiver domain J164_04153 SM00862 Transcriptional regulatory protein, C terminal J164_04157 SM00248 ankyrin repeats J164_04158 SM01060 J164_04158 J164_04159 SM00491 J164_04159 J164_04165 SM00477 DNA/RNA non-specific endonuclease J164_04165 SM00892 DNA/RNA non-specific endonuclease J164_04168 SM01004 Delta-aminolevulinic acid dehydratase J164_04176 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. J164_04180 SM00382 ATPases associated with a variety of cellular activities J164_04182 SM00530 Helix-turn-helix XRE-family like proteins J164_04190 SM00342 helix_turn_helix, arabinose operon control protein J164_04192 SM00382 ATPases associated with a variety of cellular activities J164_04205 SM00881 CoA binding domain J164_04206 SM00116 Domain in cystathionine beta-synthase and other proteins. J164_04206 SM00924 MgtE intracellular N domain J164_04207 SM01057 Eukaryotic-type carbonic anhydrase J164_04212 SM00248 ankyrin repeats J164_04214 SM00825 Beta-ketoacyl synthase J164_04219 SM00822 J164_04219 J164_04228 SM00563 Phosphate acyltransferases J164_04239 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs J164_04239 SM00474 3'-5' exonuclease J164_04239 SM00475 5'-3' exonuclease J164_04239 SM00482 DNA polymerase A domain J164_04242 SM00912 haemagglutination activity domain J164_04246 SM00331 Sigma factor PP2C-like phosphatases J164_04246 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain J164_04251 SM00240 Forkhead associated domain J164_04254 SM00028 Tetratricopeptide repeats J164_04256 SM00220 Serine/Threonine protein kinases, catalytic domain J164_04260 SM00965 Secretin and TonB N terminus short domain J164_04262 SM00915 Jacalin-like lectin domain J164_04268 SM00382 ATPases associated with a variety of cellular activities J164_04268 SM01086 C-terminal, D2-small domain, of ClpB protein J164_04276 SM00342 helix_turn_helix, arabinose operon control protein J164_04278 SM01266 J164_04278 J164_04281 SM00155 Phospholipase D. Active site motifs. J164_04310 SM00421 helix_turn_helix, Lux Regulon J164_04310 SM00448 cheY-homologous receiver domain J164_04320 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J164_04324 SM00346 helix_turn_helix isocitrate lyase regulation J164_04326 SM00091 PAS domain J164_04326 SM00387 Histidine kinase-like ATPases J164_04326 SM00388 His Kinase A (phosphoacceptor) domain J164_04326 SM00448 cheY-homologous receiver domain J164_04331 SM00564 beta-propeller repeat J164_04341 SM00382 ATPases associated with a variety of cellular activities J164_04343 SM00836 DALR anticodon binding domain J164_04345 SM00382 ATPases associated with a variety of cellular activities J164_04359 SM00354 helix_turn _helix lactose operon repressor J164_04362 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J164_04364 SM00758 J164_04364 J164_04364 SM01217 J164_04364 J164_04368 SM00612 J164_04368 J164_04375 SM01007 Class II Aldolase and Adducin N-terminal domain J164_04380 SM00633 Glycosyl hydrolase family 10 J164_04383 SM00633 Glycosyl hydrolase family 10 J164_04385 SM00633 Glycosyl hydrolase family 10 J164_04399 SM00829 Enoylreductase J164_04400 SM00563 Phosphate acyltransferases J164_04402 SM00354 helix_turn _helix lactose operon repressor J164_04406 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family J164_04414 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J164_04414 SM00388 His Kinase A (phosphoacceptor) domain J164_04417 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain J164_04417 SM01232 J164_04417 J164_04425 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J164_04425 SM00091 PAS domain J164_04436 SM00347 helix_turn_helix multiple antibiotic resistance protein J164_04443 SM00155 Phospholipase D. Active site motifs. J164_04459 SM00796 Allophanate hydrolase subunit 1 J164_04459 SM00797 Allophanate hydrolase subunit 2 J164_04459 SM00878 Biotin carboxylase C-terminal domain J164_04474 SM00382 ATPases associated with a variety of cellular activities J164_04484 SM00829 Enoylreductase J164_04492 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J164_04492 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J164_04492 SM00091 PAS domain J164_04492 SM00267 diguanylate cyclase J164_04498 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase J164_04504 SM00014 Acid phosphatase homologues J164_04506 SM00028 Tetratricopeptide repeats