locus-tag class description J159_00004 PF01527 Transposase J159_00006 PF00239 Resolvase, N terminal domain J159_00006 PF02796 Helix-turn-helix domain of resolvase J159_00019 PF07015 VirC1 protein J159_00023 PF03377 TAL effector repeat J159_00027 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system J159_00029 PF00239 Resolvase, N terminal domain J159_00029 PF02796 Helix-turn-helix domain of resolvase J159_00033 PF13700 Domain of unknown function (DUF4158) J159_00033 PF01526 Tn3 transposase DDE domain J159_00036 PF02796 Helix-turn-helix domain of resolvase J159_00036 PF00239 Resolvase, N terminal domain J159_00037 PF03377 TAL effector repeat J159_00041 PF13614 AAA domain J159_00049 PF13406 Transglycosylase SLT domain J159_00050 PF01526 Tn3 transposase DDE domain J159_00050 PF13700 Domain of unknown function (DUF4158) J159_00055 PF01527 Transposase J159_00056 PF03377 TAL effector repeat J159_00060 PF07015 VirC1 protein J159_00073 PF07057 DNA helicase TraI J159_00073 PF18272 single-stranded DNA binding TraI N-terminal subdomain J159_00073 PF07057 DNA helicase TraI J159_00073 PF18340 DNA relaxase TraI 2B/2B-like domain J159_00073 PF08751 TrwC relaxase J159_00073 PF08751 TrwC relaxase J159_00073 PF18340 DNA relaxase TraI 2B/2B-like domain J159_00073 PF18272 single-stranded DNA binding TraI N-terminal subdomain J159_00078 PF01464 Transglycosylase SLT domain J159_00079 PF00437 Type II/IV secretion system protein J159_00080 PF03743 Bacterial conjugation TrbI-like protein J159_00081 PF03524 Conjugal transfer protein J159_00093 PF01527 Transposase J159_00096 PF08535 KorB domain J159_00096 PF06613 KorB C-terminal beta-barrel domain J159_00096 PF02195 ParB-like nuclease domain J159_00097 PF13614 AAA domain J159_00102 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin J159_00103 PF02796 Helix-turn-helix domain of resolvase J159_00103 PF00239 Resolvase, N terminal domain J159_00104 PF13333 Integrase core domain J159_00104 PF13276 HTH-like domain J159_00104 PF00665 Integrase core domain J159_00105 PF13333 Integrase core domain J159_00105 PF00665 Integrase core domain J159_00105 PF13276 HTH-like domain J159_00106 PF03377 TAL effector repeat J159_00107 PF01526 Tn3 transposase DDE domain J159_00107 PF13700 Domain of unknown function (DUF4158) J159_00110 PF02796 Helix-turn-helix domain of resolvase J159_00110 PF00239 Resolvase, N terminal domain J159_00111 PF08299 Bacterial dnaA protein helix-turn-helix J159_00111 PF11638 DnaA N-terminal domain J159_00111 PF00308 Bacterial dnaA protein J159_00112 PF02767 DNA polymerase III beta subunit, central domain J159_00112 PF00712 DNA polymerase III beta subunit, N-terminal domain J159_00112 PF02768 DNA polymerase III beta subunit, C-terminal domain J159_00113 PF02463 RecF/RecN/SMC N terminal domain J159_00115 PF00986 DNA gyrase B subunit, carboxyl terminus J159_00115 PF01751 Toprim domain J159_00115 PF00204 DNA gyrase B J159_00115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_00115 PF18053 DNA gyrase B subunit insert domain J159_00117 PF01435 Peptidase family M48 J159_00119 PF03544 Gram-negative bacterial TonB protein C-terminal J159_00120 PF01618 MotA/TolQ/ExbB proton channel family J159_00121 PF02472 Biopolymer transport protein ExbD/TolR J159_00122 PF02472 Biopolymer transport protein ExbD/TolR J159_00123 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ J159_00125 PF13396 Phospholipase_D-nuclease N-terminal J159_00125 PF13091 PLD-like domain J159_00128 PF04055 Radical SAM superfamily J159_00130 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J159_00133 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J159_00133 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J159_00134 PF03572 Peptidase family S41 J159_00134 PF13180 PDZ domain J159_00135 PF01551 Peptidase family M23 J159_00137 PF04389 Peptidase family M28 J159_00139 PF00150 Cellulase (glycosyl hydrolase family 5) J159_00140 PF00150 Cellulase (glycosyl hydrolase family 5) J159_00141 PF00150 Cellulase (glycosyl hydrolase family 5) J159_00142 PF00107 Zinc-binding dehydrogenase J159_00142 PF08240 Alcohol dehydrogenase GroES-like domain J159_00143 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J159_00143 PF07992 Pyridine nucleotide-disulphide oxidoreductase J159_00144 PF00310 Glutamine amidotransferases class-II J159_00144 PF01645 Conserved region in glutamate synthase J159_00144 PF01493 GXGXG motif J159_00144 PF04898 Glutamate synthase central domain J159_00148 PF01804 Penicillin amidase J159_00150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_00150 PF03466 LysR substrate binding domain J159_00153 PF02397 Bacterial sugar transferase J159_00154 PF02350 UDP-N-acetylglucosamine 2-epimerase J159_00156 PF03808 Glycosyl transferase WecB/TagA/CpsF family J159_00157 PF13439 Glycosyltransferase Family 4 J159_00157 PF00534 Glycosyl transferases group 1 J159_00161 PF00733 Asparagine synthase J159_00161 PF13537 Glutamine amidotransferase domain J159_00164 PF16363 GDP-mannose 4,6 dehydratase J159_00167 PF00005 ABC transporter J159_00167 PF00664 ABC transporter transmembrane region J159_00169 PF00733 Asparagine synthase J159_00169 PF13537 Glutamine amidotransferase domain J159_00174 PF00685 Sulfotransferase domain J159_00191 PF00271 Helicase conserved C-terminal domain J159_00191 PF00270 DEAD/DEAH box helicase J159_00191 PF09369 Domain of unknown function (DUF1998) J159_00192 PF03006 Haemolysin-III related J159_00195 PF00106 short chain dehydrogenase J159_00197 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_00197 PF03466 LysR substrate binding domain J159_00201 PF02525 Flavodoxin-like fold J159_00203 PF01527 Transposase J159_00204 PF13276 HTH-like domain J159_00204 PF13333 Integrase core domain J159_00204 PF00665 Integrase core domain J159_00212 PF05532 CsbD-like J159_00216 PF16485 Protealysin propeptide J159_00216 PF02868 Thermolysin metallopeptidase, alpha-helical domain J159_00216 PF01447 Thermolysin metallopeptidase, catalytic domain J159_00218 PF13344 Haloacid dehalogenase-like hydrolase J159_00218 PF00293 NUDIX domain J159_00221 PF00085 Thioredoxin J159_00222 PF08946 Osmosensory transporter coiled coil J159_00222 PF00083 Sugar (and other) transporter J159_00230 PF17863 AAA lid domain J159_00230 PF07726 ATPase family associated with various cellular activities (AAA) J159_00236 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain J159_00237 PF00155 Aminotransferase class I and II J159_00238 PF07715 TonB-dependent Receptor Plug Domain J159_00238 PF00593 TonB dependent receptor J159_00240 PF07883 Cupin domain J159_00241 PF00171 Aldehyde dehydrogenase family J159_00245 PF02735 Ku70/Ku80 beta-barrel domain J159_00246 PF01070 FMN-dependent dehydrogenase J159_00247 PF00144 Beta-lactamase J159_00248 PF07730 Histidine kinase J159_00249 PF00196 Bacterial regulatory proteins, luxR family J159_00249 PF00072 Response regulator receiver domain J159_00253 PF00486 Transcriptional regulatory protein, C terminal J159_00253 PF18500 CadC C-terminal domain 1 J159_00254 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J159_00254 PF12241 Trans-2-enoyl-CoA reductase catalytic region J159_00254 PF07055 Enoyl reductase FAD binding domain J159_00256 PF00294 pfkB family carbohydrate kinase J159_00267 PF01527 Transposase J159_00268 PF13333 Integrase core domain J159_00268 PF00665 Integrase core domain J159_00268 PF13276 HTH-like domain J159_00269 PF00128 Alpha amylase, catalytic domain J159_00269 PF11896 Domain of unknown function (DUF3416) J159_00270 PF00128 Alpha amylase, catalytic domain J159_00270 PF16657 Maltogenic Amylase, C-terminal domain J159_00271 PF02806 Alpha amylase, C-terminal all-beta domain J159_00271 PF00128 Alpha amylase, catalytic domain J159_00271 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J159_00273 PF00248 Aldo/keto reductase family J159_00274 PF00135 Carboxylesterase family J159_00275 PF07859 alpha/beta hydrolase fold J159_00275 PF13472 GDSL-like Lipase/Acylhydrolase family J159_00277 PF03480 Bacterial extracellular solute-binding protein, family 7 J159_00279 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J159_00280 PF04616 Glycosyl hydrolases family 43 J159_00280 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J159_00281 PF00356 Bacterial regulatory proteins, lacI family J159_00282 PF04962 KduI/IolB family J159_00285 PF00657 GDSL-like Lipase/Acylhydrolase J159_00288 PF00351 Biopterin-dependent aromatic amino acid hydroxylase J159_00289 PF01037 Lrp/AsnC ligand binding domain J159_00290 PF00593 TonB dependent receptor J159_00290 PF07715 TonB-dependent Receptor Plug Domain J159_00290 PF07660 Secretin and TonB N terminus short domain J159_00291 PF01734 Patatin-like phospholipase J159_00293 PF00005 ABC transporter J159_00296 PF00005 ABC transporter J159_00297 PF00528 Binding-protein-dependent transport system inner membrane component J159_00299 PF12867 DinB superfamily J159_00299 PF03781 Sulfatase-modifying factor enzyme 1 J159_00302 PF01381 Helix-turn-helix J159_00306 PF01883 Iron-sulfur cluster assembly protein J159_00306 PF10609 NUBPL iron-transfer P-loop NTPase J159_00309 PF13091 PLD-like domain J159_00310 PF03061 Thioesterase superfamily J159_00316 PF08240 Alcohol dehydrogenase GroES-like domain J159_00316 PF00107 Zinc-binding dehydrogenase J159_00318 PF02673 Bacitracin resistance protein BacA J159_00319 PF00120 Glutamine synthetase, catalytic domain J159_00319 PF03951 Glutamine synthetase, beta-Grasp domain J159_00320 PF00543 Nitrogen regulatory protein P-II J159_00321 PF00909 Ammonium Transporter Family J159_00322 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_00322 PF00512 His Kinase A (phospho-acceptor) domain J159_00322 PF00989 PAS fold J159_00323 PF02954 Bacterial regulatory protein, Fis family J159_00323 PF00072 Response regulator receiver domain J159_00323 PF00158 Sigma-54 interaction domain J159_00324 PF00080 Copper/zinc superoxide dismutase (SODC) J159_00325 PF00080 Copper/zinc superoxide dismutase (SODC) J159_00326 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J159_00328 PF00108 Thiolase, N-terminal domain J159_00328 PF02803 Thiolase, C-terminal domain J159_00335 PF00581 Rhodanese-like domain J159_00336 PF02556 Preprotein translocase subunit SecB J159_00337 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J159_00337 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J159_00339 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J159_00339 PF00205 Thiamine pyrophosphate enzyme, central domain J159_00339 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J159_00340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_00341 PF02954 Bacterial regulatory protein, Fis family J159_00341 PF00072 Response regulator receiver domain J159_00341 PF00158 Sigma-54 interaction domain J159_00344 PF07690 Major Facilitator Superfamily J159_00345 PF00588 SpoU rRNA Methylase family J159_00348 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J159_00348 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J159_00349 PF13784 Fic/DOC family N-terminal J159_00349 PF02661 Fic/DOC family J159_00350 PF00561 alpha/beta hydrolase fold J159_00351 PF03692 Putative zinc- or iron-chelating domain J159_00352 PF00501 AMP-binding enzyme J159_00354 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family J159_00356 PF07478 D-ala D-ala ligase C-terminus J159_00356 PF01820 D-ala D-ala ligase N-terminus J159_00358 PF03109 ABC1 family J159_00360 PF00849 RNA pseudouridylate synthase J159_00362 PF00472 RF-1 domain J159_00364 PF01112 Asparaginase J159_00365 PF01432 Peptidase family M3 J159_00366 PF12706 Beta-lactamase superfamily domain J159_00369 PF12833 Helix-turn-helix domain J159_00370 PF00999 Sodium/hydrogen exchanger family J159_00371 PF03466 LysR substrate binding domain J159_00371 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_00372 PF01274 Malate synthase J159_00373 PF00463 Isocitrate lyase family J159_00374 PF00990 Diguanylate cyclase, GGDEF domain J159_00378 PF00326 Prolyl oligopeptidase family J159_00379 PF00289 Biotin carboxylase, N-terminal domain J159_00379 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J159_00379 PF02785 Biotin carboxylase C-terminal domain J159_00379 PF00364 Biotin-requiring enzyme J159_00380 PF01039 Carboxyl transferase domain J159_00381 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J159_00381 PF02770 Acyl-CoA dehydrogenase, middle domain J159_00381 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J159_00392 PF07683 Cobalamin synthesis protein cobW C-terminal domain J159_00392 PF02492 CobW/HypB/UreG, nucleotide-binding domain J159_00396 PF03969 AFG1-like ATPase J159_00397 PF01047 MarR family J159_00398 PF02566 OsmC-like protein J159_00403 PF00107 Zinc-binding dehydrogenase J159_00403 PF16884 N-terminal domain of oxidoreductase J159_00406 PF00849 RNA pseudouridylate synthase J159_00407 PF00593 TonB dependent receptor J159_00409 PF04408 Helicase associated domain (HA2) J159_00409 PF00270 DEAD/DEAH box helicase J159_00409 PF00271 Helicase conserved C-terminal domain J159_00409 PF08482 ATP-dependent helicase C-terminal J159_00410 PF07308 Protein of unknown function (DUF1456) J159_00411 PF00576 HIUase/Transthyretin family J159_00412 PF13454 FAD-NAD(P)-binding J159_00413 PF01014 Uricase J159_00413 PF09349 OHCU decarboxylase J159_00416 PF00266 Aminotransferase class-V J159_00417 PF01546 Peptidase family M20/M25/M40 J159_00417 PF07687 Peptidase dimerisation domain J159_00418 PF03466 LysR substrate binding domain J159_00418 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_00419 PF07690 Major Facilitator Superfamily J159_00422 PF01425 Amidase J159_00423 PF01156 Inosine-uridine preferring nucleoside hydrolase J159_00425 PF00860 Permease family J159_00426 PF00111 2Fe-2S iron-sulfur cluster binding domain J159_00427 PF00355 Rieske [2Fe-2S] domain J159_00428 PF03466 LysR substrate binding domain J159_00428 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_00429 PF01026 TatD related DNase J159_00432 PF03466 LysR substrate binding domain J159_00432 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_00433 PF07690 Major Facilitator Superfamily J159_00436 PF02146 Sir2 family J159_00437 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J159_00438 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J159_00438 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J159_00440 PF00551 Formyl transferase J159_00441 PF00486 Transcriptional regulatory protein, C terminal J159_00441 PF00072 Response regulator receiver domain J159_00442 PF00512 His Kinase A (phospho-acceptor) domain J159_00442 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_00442 PF00672 HAMP domain J159_00443 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J159_00443 PF00529 HlyD membrane-fusion protein of T1SS J159_00444 PF00873 AcrB/AcrD/AcrF family J159_00445 PF02321 Outer membrane efflux protein J159_00447 PF02219 Methylenetetrahydrofolate reductase J159_00448 PF02677 Epoxyqueuosine reductase QueH J159_00449 PF03466 LysR substrate binding domain J159_00449 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_00450 PF03358 NADPH-dependent FMN reductase J159_00452 PF08267 Cobalamin-independent synthase, N-terminal domain J159_00452 PF01717 Cobalamin-independent synthase, Catalytic domain J159_00453 PF03812 2-keto-3-deoxygluconate permease J159_00455 PF05368 NmrA-like family J159_00456 PF01638 HxlR-like helix-turn-helix J159_00460 PF13276 HTH-like domain J159_00460 PF00665 Integrase core domain J159_00460 PF13333 Integrase core domain J159_00461 PF01527 Transposase J159_00462 PF13495 Phage integrase, N-terminal SAM-like domain J159_00462 PF00589 Phage integrase family J159_00463 PF00920 Dehydratase family J159_00466 PF00132 Bacterial transferase hexapeptide (six repeats) J159_00467 PF07690 Major Facilitator Superfamily J159_00468 PF01966 HD domain J159_00468 PF11871 Domain of unknown function (DUF3391) J159_00472 PF00171 Aldehyde dehydrogenase family J159_00474 PF01494 FAD binding domain J159_00477 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J159_00477 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J159_00478 PF00230 Major intrinsic protein J159_00479 PF16901 C-terminal domain of alpha-glycerophosphate oxidase J159_00479 PF01266 FAD dependent oxidoreductase J159_00480 PF08220 DeoR-like helix-turn-helix domain J159_00480 PF00455 DeoR C terminal sensor domain J159_00482 PF00355 Rieske [2Fe-2S] domain J159_00483 PF01144 Coenzyme A transferase J159_00484 PF01144 Coenzyme A transferase J159_00485 PF02803 Thiolase, C-terminal domain J159_00485 PF00108 Thiolase, N-terminal domain J159_00486 PF00775 Dioxygenase J159_00486 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal J159_00488 PF00206 Lyase J159_00488 PF10397 Adenylosuccinate lyase C-terminus J159_00489 PF12146 Serine aminopeptidase, S33 J159_00490 PF02627 Carboxymuconolactone decarboxylase family J159_00492 PF01614 Bacterial transcriptional regulator J159_00492 PF09339 IclR helix-turn-helix domain J159_00494 PF07859 alpha/beta hydrolase fold J159_00495 PF10677 Protein of unknown function (DUF2490) J159_00496 PF01134 Glucose inhibited division protein A J159_00496 PF13932 GidA associated domain J159_00498 PF00291 Pyridoxal-phosphate dependent enzyme J159_00502 PF13649 Methyltransferase domain J159_00504 PF12697 Alpha/beta hydrolase family J159_00506 PF00155 Aminotransferase class I and II J159_00507 PF04055 Radical SAM superfamily J159_00507 PF06968 Biotin and Thiamin Synthesis associated domain J159_00509 PF01040 UbiA prenyltransferase family J159_00513 PF05819 NolX protein J159_00521 PF01313 Bacterial export proteins, family 3 J159_00522 PF00813 FliP family J159_00525 PF00771 FHIPEP family J159_00526 PF01312 FlhB HrpN YscU SpaS Family J159_00529 PF01514 Secretory protein of YscJ/FliF family J159_00532 PF18269 T3SS EscN ATPase C-terminal domain J159_00532 PF02874 ATP synthase alpha/beta family, beta-barrel domain J159_00532 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J159_00534 PF01311 Bacterial export proteins, family 1 J159_00537 PF01464 Transglycosylase SLT domain J159_00540 PF00924 Mechanosensitive ion channel J159_00540 PF12794 Mechanosensitive ion channel inner membrane domain 1 J159_00540 PF12795 Mechanosensitive ion channel porin domain J159_00541 PF00884 Sulfatase J159_00542 PF03109 ABC1 family J159_00543 PF05661 Protein of unknown function (DUF808) J159_00544 PF00072 Response regulator receiver domain J159_00544 PF00990 Diguanylate cyclase, GGDEF domain J159_00545 PF08323 Starch synthase catalytic domain J159_00545 PF00534 Glycosyl transferases group 1 J159_00546 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J159_00546 PF00128 Alpha amylase, catalytic domain J159_00546 PF02806 Alpha amylase, C-terminal all-beta domain J159_00547 PF11941 Domain of unknown function (DUF3459) J159_00547 PF00128 Alpha amylase, catalytic domain J159_00547 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J159_00548 PF02446 4-alpha-glucanotransferase J159_00549 PF00128 Alpha amylase, catalytic domain J159_00551 PF00128 Alpha amylase, catalytic domain J159_00551 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J159_00552 PF13460 NAD(P)H-binding J159_00555 PF06903 VirK protein J159_00556 PF02321 Outer membrane efflux protein J159_00559 PF00873 AcrB/AcrD/AcrF family J159_00562 PF00270 DEAD/DEAH box helicase J159_00562 PF00271 Helicase conserved C-terminal domain J159_00564 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J159_00564 PF00364 Biotin-requiring enzyme J159_00564 PF02817 e3 binding domain J159_00566 PF02779 Transketolase, pyrimidine binding domain J159_00566 PF02780 Transketolase, C-terminal domain J159_00567 PF00676 Dehydrogenase E1 component J159_00569 PF03301 Tryptophan 2,3-dioxygenase J159_00570 PF00854 POT family J159_00572 PF01047 MarR family J159_00573 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J159_00574 PF04209 homogentisate 1,2-dioxygenase J159_00577 PF03334 Na+/H+ antiporter subunit J159_00578 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) J159_00580 PF00361 Proton-conducting membrane transporter J159_00581 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J159_00582 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J159_00582 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J159_00582 PF13244 Domain of unknown function (DUF4040) J159_00582 PF00361 Proton-conducting membrane transporter J159_00585 PF07504 Fungalysin/Thermolysin Propeptide Motif J159_00585 PF01483 Proprotein convertase P-domain J159_00585 PF01447 Thermolysin metallopeptidase, catalytic domain J159_00585 PF02868 Thermolysin metallopeptidase, alpha-helical domain J159_00586 PF00182 Chitinase class I J159_00590 PF01259 SAICAR synthetase J159_00591 PF05099 Tellurite resistance protein TerB J159_00591 PF00226 DnaJ domain J159_00593 PF00834 Ribulose-phosphate 3 epimerase family J159_00594 PF00583 Acetyltransferase (GNAT) family J159_00595 PF00781 Diacylglycerol kinase catalytic domain J159_00596 PF00425 chorismate binding enzyme J159_00596 PF04715 Anthranilate synthase component I, N terminal region J159_00598 PF00117 Glutamine amidotransferase class-I J159_00600 PF00591 Glycosyl transferase family, a/b domain J159_00600 PF02885 Glycosyl transferase family, helical bundle domain J159_00601 PF00218 Indole-3-glycerol phosphate synthase J159_00603 PF00325 Bacterial regulatory proteins, crp family J159_00603 PF00027 Cyclic nucleotide-binding domain J159_00604 PF02675 S-adenosylmethionine decarboxylase J159_00605 PF00893 Small Multidrug Resistance protein J159_00606 PF03232 Ubiquinone biosynthesis protein COQ7 J159_00607 PF00572 Ribosomal protein L13 J159_00608 PF00380 Ribosomal protein S9/S16 J159_00611 PF00293 NUDIX domain J159_00612 PF00210 Ferritin-like domain J159_00613 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_00613 PF00672 HAMP domain J159_00613 PF00072 Response regulator receiver domain J159_00613 PF01627 Hpt domain J159_00613 PF00512 His Kinase A (phospho-acceptor) domain J159_00613 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J159_00614 PF00072 Response regulator receiver domain J159_00614 PF00486 Transcriptional regulatory protein, C terminal J159_00618 PF01521 Iron-sulphur cluster biosynthesis J159_00621 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain J159_00621 PF00293 NUDIX domain J159_00621 PF09297 NADH pyrophosphatase zinc ribbon domain J159_00622 PF17113 Regulatory signalling modulator protein AmpE J159_00622 PF03186 CobD/Cbib protein J159_00625 PF07690 Major Facilitator Superfamily J159_00626 PF03466 LysR substrate binding domain J159_00626 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_00627 PF07690 Major Facilitator Superfamily J159_00628 PF12805 FUSC-like inner membrane protein yccS J159_00629 PF02843 Phosphoribosylglycinamide synthetase, C domain J159_00629 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J159_00629 PF02844 Phosphoribosylglycinamide synthetase, N domain J159_00631 PF02142 MGS-like domain J159_00631 PF01808 AICARFT/IMPCHase bienzyme J159_00632 PF01066 CDP-alcohol phosphatidyltransferase J159_00633 PF12147 Putative methyltransferase J159_00633 PF12146 Serine aminopeptidase, S33 J159_00634 PF00782 Dual specificity phosphatase, catalytic domain J159_00640 PF02954 Bacterial regulatory protein, Fis family J159_00643 PF01381 Helix-turn-helix J159_00648 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J159_00648 PF02785 Biotin carboxylase C-terminal domain J159_00648 PF00289 Biotin carboxylase, N-terminal domain J159_00650 PF00364 Biotin-requiring enzyme J159_00651 PF01220 Dehydroquinase class II J159_00652 PF11412 Disulphide bond corrector protein DsbC J159_00652 PF02683 Cytochrome C biogenesis protein transmembrane region J159_00653 PF03091 CutA1 divalent ion tolerance protein J159_00656 PF01852 START domain J159_00658 PF00106 short chain dehydrogenase J159_00659 PF04231 Endonuclease I J159_00660 PF00166 Chaperonin 10 Kd subunit J159_00661 PF00118 TCP-1/cpn60 chaperonin family J159_00663 PF07715 TonB-dependent Receptor Plug Domain J159_00663 PF00593 TonB dependent receptor J159_00664 PF00793 DAHP synthetase I family J159_00667 PF08450 SMP-30/Gluconolactonase/LRE-like region J159_00669 PF03710 Glutamate-ammonia ligase adenylyltransferase J159_00669 PF08335 GlnD PII-uridylyltransferase J159_00670 PF02592 Putative vitamin uptake transporter J159_00673 PF00881 Nitroreductase family J159_00674 PF04264 YceI-like domain J159_00678 PF16957 Malonate decarboxylase, alpha subunit, transporter J159_00679 PF06857 Malonate decarboxylase delta subunit (MdcD) J159_00680 PF01039 Carboxyl transferase domain J159_00682 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG J159_00683 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase J159_00685 PF00698 Acyl transferase domain J159_00687 PF07729 FCD domain J159_00687 PF00392 Bacterial regulatory proteins, gntR family J159_00688 PF13419 Haloacid dehalogenase-like hydrolase J159_00694 PF07745 Glycosyl hydrolase family 53 J159_00695 PF00456 Transketolase, thiamine diphosphate binding domain J159_00695 PF17831 Pyruvate dehydrogenase E1 component middle domain J159_00696 PF13276 HTH-like domain J159_00696 PF13333 Integrase core domain J159_00696 PF00665 Integrase core domain J159_00697 PF01527 Transposase J159_00698 PF00106 short chain dehydrogenase J159_00701 PF00106 short chain dehydrogenase J159_00703 PF13409 Glutathione S-transferase, N-terminal domain J159_00708 PF12823 Domain of unknown function (DUF3817) J159_00708 PF03176 MMPL family J159_00709 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J159_00709 PF00326 Prolyl oligopeptidase family J159_00710 PF07759 Protein of unknown function (DUF1615) J159_00711 PF00990 Diguanylate cyclase, GGDEF domain J159_00711 PF05230 MASE2 domain J159_00715 PF00892 EamA-like transporter family J159_00716 PF00497 Bacterial extracellular solute-binding proteins, family 3 J159_00719 PF00324 Amino acid permease J159_00721 PF01544 CorA-like Mg2+ transporter protein J159_00723 PF01204 Trehalase J159_00725 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J159_00725 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J159_00730 PF00563 EAL domain J159_00730 PF00990 Diguanylate cyclase, GGDEF domain J159_00730 PF08448 PAS fold J159_00730 PF08447 PAS fold J159_00731 PF02203 Tar ligand binding domain homologue J159_00731 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_00731 PF00672 HAMP domain J159_00732 PF00553 Cellulose binding domain J159_00732 PF00150 Cellulase (glycosyl hydrolase family 5) J159_00733 PF00916 Sulfate permease family J159_00733 PF01740 STAS domain J159_00734 PF08448 PAS fold J159_00734 PF00990 Diguanylate cyclase, GGDEF domain J159_00737 PF13632 Glycosyl transferase family group 2 J159_00739 PF06580 Histidine kinase J159_00739 PF07694 5TMR of 5TMR-LYT J159_00740 PF04397 LytTr DNA-binding domain J159_00740 PF00072 Response regulator receiver domain J159_00741 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J159_00741 PF03900 Porphobilinogen deaminase, C-terminal domain J159_00746 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J159_00746 PF00326 Prolyl oligopeptidase family J159_00748 PF00155 Aminotransferase class I and II J159_00749 PF00326 Prolyl oligopeptidase family J159_00749 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J159_00750 PF04304 Protein of unknown function (DUF454) J159_00752 PF01678 Diaminopimelate epimerase J159_00754 PF02899 Phage integrase, N-terminal SAM-like domain J159_00754 PF00589 Phage integrase family J159_00755 PF00227 Proteasome subunit J159_00756 PF00004 ATPase family associated with various cellular activities (AAA) J159_00756 PF07724 AAA domain (Cdc48 subfamily) J159_00756 PF10431 C-terminal, D2-small domain, of ClpB protein J159_00758 PF13673 Acetyltransferase (GNAT) domain J159_00759 PF13533 Biotin-lipoyl like J159_00761 PF01209 ubiE/COQ5 methyltransferase family J159_00762 PF00563 EAL domain J159_00762 PF00990 Diguanylate cyclase, GGDEF domain J159_00762 PF03707 Bacterial signalling protein N terminal repeat J159_00763 PF11838 ERAP1-like C-terminal domain J159_00763 PF01433 Peptidase family M1 domain J159_00766 PF13360 PQQ-like domain J159_00767 PF00497 Bacterial extracellular solute-binding proteins, family 3 J159_00770 PF08240 Alcohol dehydrogenase GroES-like domain J159_00770 PF00107 Zinc-binding dehydrogenase J159_00772 PF01590 GAF domain J159_00772 PF00158 Sigma-54 interaction domain J159_00772 PF02954 Bacterial regulatory protein, Fis family J159_00773 PF00294 pfkB family carbohydrate kinase J159_00775 PF04085 rod shape-determining protein MreC J159_00777 PF03717 Penicillin-binding Protein dimerisation domain J159_00777 PF00905 Penicillin binding protein transpeptidase domain J159_00778 PF01098 Cell cycle protein J159_00779 PF00295 Glycosyl hydrolases family 28 J159_00780 PF13406 Transglycosylase SLT domain J159_00781 PF03330 Lytic transglycolase J159_00781 PF05036 Sporulation related domain J159_00782 PF00768 D-alanyl-D-alanine carboxypeptidase J159_00782 PF07943 Penicillin-binding protein 5, C-terminal domain J159_00784 PF04359 Protein of unknown function (DUF493) J159_00785 PF03099 Biotin/lipoate A/B protein ligase family J159_00786 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family J159_00786 PF04055 Radical SAM superfamily J159_00787 PF03572 Peptidase family S41 J159_00787 PF00595 PDZ domain J159_00787 PF17804 Tail specific protease N-terminal domain J159_00787 PF11818 C-terminal domain of tail specific protease (DUF3340) J159_00789 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_00789 PF03466 LysR substrate binding domain J159_00791 PF00293 NUDIX domain J159_00791 PF01467 Cytidylyltransferase-like J159_00798 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J159_00798 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J159_00799 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J159_00799 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J159_00800 PF04972 BON domain J159_00801 PF00512 His Kinase A (phospho-acceptor) domain J159_00801 PF01590 GAF domain J159_00801 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_00801 PF08446 PAS fold J159_00801 PF00360 Phytochrome region J159_00802 PF00072 Response regulator receiver domain J159_00803 PF00512 His Kinase A (phospho-acceptor) domain J159_00803 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_00804 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J159_00805 PF00106 short chain dehydrogenase J159_00813 PF03958 Bacterial type II/III secretion system short domain J159_00813 PF00263 Bacterial type II and III secretion system protein J159_00814 PF00437 Type II/IV secretion system protein J159_00815 PF00482 Type II secretion system (T2SS), protein F J159_00816 PF07963 Prokaryotic N-terminal methylation motif J159_00816 PF08334 Type II secretion system (T2SS), protein G J159_00817 PF12019 Type II transport protein GspH J159_00817 PF07963 Prokaryotic N-terminal methylation motif J159_00819 PF11612 Type II secretion system (T2SS), protein J J159_00819 PF07963 Prokaryotic N-terminal methylation motif J159_00820 PF03934 Type II secretion system (T2SS), protein K J159_00826 PF02837 Glycosyl hydrolases family 2, sugar binding domain J159_00826 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J159_00826 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J159_00826 PF16355 Domain of unknown function (DUF4982) J159_00826 PF00703 Glycosyl hydrolases family 2 J159_00831 PF07690 Major Facilitator Superfamily J159_00832 PF00356 Bacterial regulatory proteins, lacI family J159_00833 PF01380 SIS domain J159_00834 PF01979 Amidohydrolase family J159_00836 PF01966 HD domain J159_00836 PF12627 Probable RNA and SrmB- binding site of polymerase A J159_00836 PF01743 Poly A polymerase head domain J159_00837 PF00732 GMC oxidoreductase J159_00837 PF05199 GMC oxidoreductase J159_00838 PF00171 Aldehyde dehydrogenase family J159_00839 PF02028 BCCT, betaine/carnitine/choline family transporter J159_00841 PF01323 DSBA-like thioredoxin domain J159_00844 PF00034 Cytochrome c J159_00845 PF01926 50S ribosome-binding GTPase J159_00846 PF10996 Beta-Casp domain J159_00846 PF00753 Metallo-beta-lactamase superfamily J159_00846 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain J159_00848 PF04107 Glutamate-cysteine ligase family 2(GCS2) J159_00849 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_00849 PF00672 HAMP domain J159_00849 PF00512 His Kinase A (phospho-acceptor) domain J159_00850 PF00072 Response regulator receiver domain J159_00850 PF00486 Transcriptional regulatory protein, C terminal J159_00853 PF02583 Metal-sensitive transcriptional repressor J159_00854 PF00107 Zinc-binding dehydrogenase J159_00854 PF08240 Alcohol dehydrogenase GroES-like domain J159_00855 PF04828 Glutathione-dependent formaldehyde-activating enzyme J159_00856 PF00756 Putative esterase J159_00857 PF00155 Aminotransferase class I and II J159_00857 PF00392 Bacterial regulatory proteins, gntR family J159_00858 PF02567 Phenazine biosynthesis-like protein J159_00859 PF00892 EamA-like transporter family J159_00861 PF00005 ABC transporter J159_00861 PF12848 ABC transporter J159_00863 PF00464 Serine hydroxymethyltransferase J159_00864 PF03477 ATP cone domain J159_00866 PF01872 RibD C-terminal domain J159_00866 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J159_00869 PF00677 Lumazine binding domain J159_00870 PF00925 GTP cyclohydrolase II J159_00870 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J159_00871 PF00885 6,7-dimethyl-8-ribityllumazine synthase J159_00872 PF01029 NusB family J159_00873 PF00586 AIR synthase related protein, N-terminal domain J159_00873 PF02769 AIR synthase related protein, C-terminal domain J159_00877 PF03814 Potassium-transporting ATPase A subunit J159_00879 PF02669 K+-transporting ATPase, c chain J159_00880 PF13493 Domain of unknown function (DUF4118) J159_00880 PF13492 GAF domain J159_00880 PF02702 Osmosensitive K+ channel His kinase sensor domain J159_00880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_00880 PF00512 His Kinase A (phospho-acceptor) domain J159_00881 PF00072 Response regulator receiver domain J159_00881 PF00486 Transcriptional regulatory protein, C terminal J159_00884 PF01565 FAD binding domain J159_00884 PF02913 FAD linked oxidases, C-terminal domain J159_00885 PF04307 LexA-binding, inner membrane-associated putative hydrolase J159_00886 PF02021 Uncharacterised protein family UPF0102 J159_00888 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J159_00893 PF02381 MraZ protein, putative antitoxin-like J159_00894 PF01795 MraW methylase family J159_00895 PF04999 Cell division protein FtsL J159_00896 PF03717 Penicillin-binding Protein dimerisation domain J159_00896 PF00905 Penicillin binding protein transpeptidase domain J159_00897 PF01225 Mur ligase family, catalytic domain J159_00897 PF02875 Mur ligase family, glutamate ligase domain J159_00897 PF08245 Mur ligase middle domain J159_00898 PF01225 Mur ligase family, catalytic domain J159_00898 PF02875 Mur ligase family, glutamate ligase domain J159_00898 PF08245 Mur ligase middle domain J159_00899 PF00953 Glycosyl transferase family 4 J159_00900 PF01098 Cell cycle protein J159_00901 PF03033 Glycosyltransferase family 28 N-terminal domain J159_00901 PF04101 Glycosyltransferase family 28 C-terminal domain J159_00902 PF01225 Mur ligase family, catalytic domain J159_00902 PF02875 Mur ligase family, glutamate ligase domain J159_00902 PF08245 Mur ligase middle domain J159_00903 PF01820 D-ala D-ala ligase N-terminus J159_00903 PF07478 D-ala D-ala ligase C-terminus J159_00904 PF08478 POTRA domain, FtsQ-type J159_00904 PF03799 Cell division protein FtsQ J159_00905 PF02491 SHS2 domain inserted in FTSA J159_00906 PF12327 FtsZ family, C-terminal domain J159_00906 PF00091 Tubulin/FtsZ family, GTPase domain J159_00907 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase J159_00909 PF01476 LysM domain J159_00909 PF08525 Opacity-associated protein A N-terminal motif J159_00909 PF01551 Peptidase family M23 J159_00910 PF07516 SecA Wing and Scaffold domain J159_00910 PF01043 SecA preprotein cross-linking domain J159_00910 PF02810 SEC-C motif J159_00910 PF07517 SecA DEAD-like domain J159_00911 PF00293 NUDIX domain J159_00913 PF02219 Methylenetetrahydrofolate reductase J159_00916 PF00698 Acyl transferase domain J159_00916 PF08240 Alcohol dehydrogenase GroES-like domain J159_00916 PF00107 Zinc-binding dehydrogenase J159_00916 PF00109 Beta-ketoacyl synthase, N-terminal domain J159_00916 PF02801 Beta-ketoacyl synthase, C-terminal domain J159_00916 PF16197 Ketoacyl-synthetase C-terminal extension J159_00916 PF00550 Phosphopantetheine attachment site J159_00916 PF14765 Polyketide synthase dehydratase J159_00916 PF08659 KR domain J159_00917 PF09286 Pro-kumamolisin, activation domain J159_00917 PF00082 Subtilase family J159_00919 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J159_00920 PF00128 Alpha amylase, catalytic domain J159_00926 PF13649 Methyltransferase domain J159_00927 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain J159_00927 PF05221 S-adenosyl-L-homocysteine hydrolase J159_00930 PF00311 Phosphoenolpyruvate carboxylase J159_00935 PF00328 Histidine phosphatase superfamily (branch 2) J159_00936 PF02772 S-adenosylmethionine synthetase, central domain J159_00936 PF02773 S-adenosylmethionine synthetase, C-terminal domain J159_00936 PF00438 S-adenosylmethionine synthetase, N-terminal domain J159_00938 PF13649 Methyltransferase domain J159_00939 PF01207 Dihydrouridine synthase (Dus) J159_00942 PF00294 pfkB family carbohydrate kinase J159_00943 PF01773 Na+ dependent nucleoside transporter N-terminus J159_00943 PF07662 Na+ dependent nucleoside transporter C-terminus J159_00943 PF07670 Nucleoside recognition J159_00944 PF00248 Aldo/keto reductase family J159_00946 PF07715 TonB-dependent Receptor Plug Domain J159_00946 PF00593 TonB dependent receptor J159_00951 PF00528 Binding-protein-dependent transport system inner membrane component J159_00952 PF00005 ABC transporter J159_00954 PF02668 Taurine catabolism dioxygenase TauD, TfdA family J159_00956 PF00005 ABC transporter J159_00957 PF13472 GDSL-like Lipase/Acylhydrolase family J159_00958 PF00072 Response regulator receiver domain J159_00958 PF00486 Transcriptional regulatory protein, C terminal J159_00959 PF00512 His Kinase A (phospho-acceptor) domain J159_00959 PF08521 Two-component sensor kinase N-terminal J159_00959 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_00961 PF01219 Prokaryotic diacylglycerol kinase J159_00965 PF01790 Prolipoprotein diacylglyceryl transferase J159_00966 PF00303 Thymidylate synthase J159_00968 PF00186 Dihydrofolate reductase J159_00969 PF00158 Sigma-54 interaction domain J159_00970 PF08028 Acyl-CoA dehydrogenase, C-terminal domain J159_00970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J159_00971 PF00005 ABC transporter J159_00972 PF00528 Binding-protein-dependent transport system inner membrane component J159_00974 PF00296 Luciferase-like monooxygenase J159_00975 PF03358 NADPH-dependent FMN reductase J159_00979 PF00296 Luciferase-like monooxygenase J159_00980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J159_00981 PF00528 Binding-protein-dependent transport system inner membrane component J159_00984 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J159_00984 PF00005 ABC transporter J159_00985 PF00149 Calcineurin-like phosphoesterase J159_00986 PF04379 ApaG domain J159_00987 PF00398 Ribosomal RNA adenine dimethylase J159_00988 PF04166 Pyridoxal phosphate biosynthetic protein PdxA J159_00989 PF00639 PPIC-type PPIASE domain J159_00989 PF09312 SurA N-terminal domain J159_00990 PF04453 LPS transport system D J159_00990 PF03968 OstA-like protein J159_00993 PF00850 Histone deacetylase domain J159_00994 PF01923 Cobalamin adenosyltransferase J159_00996 PF01494 FAD binding domain J159_00997 PF01494 FAD binding domain J159_01001 PF00392 Bacterial regulatory proteins, gntR family J159_01001 PF07729 FCD domain J159_01002 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J159_01003 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit J159_01003 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J159_01004 PF03466 LysR substrate binding domain J159_01004 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_01005 PF00501 AMP-binding enzyme J159_01005 PF13193 AMP-binding enzyme C-terminal domain J159_01006 PF00171 Aldehyde dehydrogenase family J159_01007 PF00378 Enoyl-CoA hydratase/isomerase J159_01011 PF08450 SMP-30/Gluconolactonase/LRE-like region J159_01012 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J159_01012 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J159_01013 PF01728 FtsJ-like methyltransferase J159_01013 PF18125 RlmM ferredoxin-like domain J159_01016 PF00892 EamA-like transporter family J159_01017 PF00749 tRNA synthetases class I (E and Q), catalytic domain J159_01017 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J159_01020 PF00990 Diguanylate cyclase, GGDEF domain J159_01020 PF00072 Response regulator receiver domain J159_01021 PF00672 HAMP domain J159_01021 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_01021 PF00512 His Kinase A (phospho-acceptor) domain J159_01021 PF01627 Hpt domain J159_01021 PF00072 Response regulator receiver domain J159_01021 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J159_01022 PF00196 Bacterial regulatory proteins, luxR family J159_01022 PF00072 Response regulator receiver domain J159_01024 PF01625 Peptide methionine sulfoxide reductase J159_01026 PF00923 Transaldolase/Fructose-6-phosphate aldolase J159_01027 PF01272 Transcription elongation factor, GreA/GreB, C-term J159_01027 PF14760 Rnk N-terminus J159_01028 PF03466 LysR substrate binding domain J159_01028 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_01029 PF13192 Thioredoxin domain J159_01029 PF07992 Pyridine nucleotide-disulphide oxidoreductase J159_01030 PF00578 AhpC/TSA family J159_01030 PF10417 C-terminal domain of 1-Cys peroxiredoxin J159_01031 PF05175 Methyltransferase small domain J159_01031 PF17827 PrmC N-terminal domain J159_01032 PF00561 alpha/beta hydrolase fold J159_01034 PF00293 NUDIX domain J159_01035 PF01612 3'-5' exonuclease J159_01035 PF01367 5'-3' exonuclease, C-terminal SAM fold J159_01035 PF00476 DNA polymerase family A J159_01035 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J159_01041 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J159_01041 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J159_01041 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J159_01046 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J159_01047 PF02233 NAD(P) transhydrogenase beta subunit J159_01050 PF01063 Amino-transferase class IV J159_01051 PF00082 Subtilase family J159_01051 PF04151 Bacterial pre-peptidase C-terminal domain J159_01052 PF00082 Subtilase family J159_01052 PF04151 Bacterial pre-peptidase C-terminal domain J159_01053 PF04151 Bacterial pre-peptidase C-terminal domain J159_01053 PF00082 Subtilase family J159_01054 PF04073 Aminoacyl-tRNA editing domain J159_01056 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain J159_01056 PF17189 Glycosyl hydrolase family 30 beta sandwich domain J159_01057 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain J159_01057 PF17189 Glycosyl hydrolase family 30 beta sandwich domain J159_01059 PF03358 NADPH-dependent FMN reductase J159_01060 PF03631 Virulence factor BrkB J159_01061 PF08534 Redoxin J159_01062 PF00708 Acylphosphatase J159_01064 PF03976 Polyphosphate kinase 2 (PPK2) J159_01065 PF00994 Probable molybdopterin binding domain J159_01067 PF03462 PCRF domain J159_01067 PF00472 RF-1 domain J159_01068 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J159_01068 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J159_01068 PF01488 Shikimate / quinate 5-dehydrogenase J159_01070 PF03550 Outer membrane lipoprotein LolB J159_01071 PF08544 GHMP kinases C terminal J159_01071 PF00288 GHMP kinases N terminal domain J159_01073 PF14572 Phosphoribosyl synthetase-associated domain J159_01073 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J159_01074 PF14693 Ribosomal protein TL5, C-terminal domain J159_01074 PF01386 Ribosomal L25p family J159_01075 PF01195 Peptidyl-tRNA hydrolase J159_01076 PF01926 50S ribosome-binding GTPase J159_01076 PF06071 Protein of unknown function (DUF933) J159_01080 PF03143 Elongation factor Tu C-terminal domain J159_01080 PF03144 Elongation factor Tu domain 2 J159_01080 PF00009 Elongation factor Tu GTP binding domain J159_01082 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J159_01083 PF00467 KOW motif J159_01083 PF02357 Transcription termination factor nusG J159_01084 PF03946 Ribosomal protein L11, N-terminal domain J159_01084 PF00298 Ribosomal protein L11, RNA binding domain J159_01085 PF00687 Ribosomal protein L1p/L10e family J159_01086 PF00466 Ribosomal protein L10 J159_01087 PF00542 Ribosomal protein L7/L12 C-terminal domain J159_01087 PF16320 Ribosomal protein L7/L12 dimerisation domain J159_01089 PF04560 RNA polymerase Rpb2, domain 7 J159_01089 PF00562 RNA polymerase Rpb2, domain 6 J159_01089 PF04563 RNA polymerase beta subunit J159_01089 PF04561 RNA polymerase Rpb2, domain 2 J159_01089 PF10385 RNA polymerase beta subunit external 1 domain J159_01089 PF04565 RNA polymerase Rpb2, domain 3 J159_01090 PF04997 RNA polymerase Rpb1, domain 1 J159_01090 PF00623 RNA polymerase Rpb1, domain 2 J159_01090 PF04983 RNA polymerase Rpb1, domain 3 J159_01090 PF05000 RNA polymerase Rpb1, domain 4 J159_01090 PF04998 RNA polymerase Rpb1, domain 5 J159_01091 PF00164 Ribosomal protein S12/S23 J159_01092 PF00177 Ribosomal protein S7p/S5e J159_01093 PF03764 Elongation factor G, domain IV J159_01093 PF14492 Elongation Factor G, domain II J159_01093 PF00679 Elongation factor G C-terminus J159_01093 PF00009 Elongation factor Tu GTP binding domain J159_01093 PF03144 Elongation factor Tu domain 2 J159_01094 PF03144 Elongation factor Tu domain 2 J159_01094 PF00009 Elongation factor Tu GTP binding domain J159_01094 PF03143 Elongation factor Tu C-terminal domain J159_01095 PF00338 Ribosomal protein S10p/S20e J159_01096 PF00297 Ribosomal protein L3 J159_01097 PF00573 Ribosomal protein L4/L1 family J159_01098 PF00276 Ribosomal protein L23 J159_01099 PF00181 Ribosomal Proteins L2, RNA binding domain J159_01099 PF03947 Ribosomal Proteins L2, C-terminal domain J159_01100 PF00203 Ribosomal protein S19 J159_01101 PF00237 Ribosomal protein L22p/L17e J159_01102 PF07650 KH domain J159_01102 PF00189 Ribosomal protein S3, C-terminal domain J159_01103 PF00252 Ribosomal protein L16p/L10e J159_01104 PF00831 Ribosomal L29 protein J159_01105 PF00366 Ribosomal protein S17 J159_01106 PF00238 Ribosomal protein L14p/L23e J159_01107 PF00467 KOW motif J159_01107 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J159_01108 PF00281 Ribosomal protein L5 J159_01108 PF00673 ribosomal L5P family C-terminus J159_01109 PF00253 Ribosomal protein S14p/S29e J159_01110 PF00410 Ribosomal protein S8 J159_01111 PF00347 Ribosomal protein L6 J159_01112 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J159_01113 PF03719 Ribosomal protein S5, C-terminal domain J159_01113 PF00333 Ribosomal protein S5, N-terminal domain J159_01114 PF00327 Ribosomal protein L30p/L7e J159_01115 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J159_01116 PF00344 SecY translocase J159_01117 PF00416 Ribosomal protein S13/S18 J159_01118 PF00411 Ribosomal protein S11 J159_01119 PF01479 S4 domain J159_01119 PF00163 Ribosomal protein S4/S9 N-terminal domain J159_01120 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J159_01120 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J159_01120 PF01000 RNA polymerase Rpb3/RpoA insert domain J159_01121 PF01196 Ribosomal protein L17 J159_01122 PF02600 Disulfide bond formation protein DsbB J159_01124 PF01474 Class-II DAHP synthetase family J159_01126 PF01425 Amidase J159_01129 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J159_01130 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J159_01130 PF00056 lactate/malate dehydrogenase, NAD binding domain J159_01131 PF02798 Glutathione S-transferase, N-terminal domain J159_01131 PF00043 Glutathione S-transferase, C-terminal domain J159_01133 PF07992 Pyridine nucleotide-disulphide oxidoreductase J159_01133 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J159_01134 PF00107 Zinc-binding dehydrogenase J159_01134 PF08240 Alcohol dehydrogenase GroES-like domain J159_01135 PF05736 OprF membrane domain J159_01135 PF00691 OmpA family J159_01137 PF00849 RNA pseudouridylate synthase J159_01139 PF00155 Aminotransferase class I and II J159_01141 PF00528 Binding-protein-dependent transport system inner membrane component J159_01142 PF00528 Binding-protein-dependent transport system inner membrane component J159_01143 PF17850 CysA C-terminal regulatory domain J159_01143 PF00005 ABC transporter J159_01143 PF12857 TOBE-like domain J159_01145 PF08240 Alcohol dehydrogenase GroES-like domain J159_01145 PF00107 Zinc-binding dehydrogenase J159_01147 PF05506 Domain of unknown function (DUF756) J159_01147 PF04185 Phosphoesterase family J159_01148 PF10459 Peptidase S46 J159_01149 PF10459 Peptidase S46 J159_01150 PF00300 Histidine phosphatase superfamily (branch 1) J159_01151 PF08245 Mur ligase middle domain J159_01151 PF02875 Mur ligase family, glutamate ligase domain J159_01154 PF00156 Phosphoribosyl transferase domain J159_01155 PF04305 Protein of unknown function (DUF455) J159_01159 PF00149 Calcineurin-like phosphoesterase J159_01161 PF01569 PAP2 superfamily J159_01162 PF00534 Glycosyl transferases group 1 J159_01162 PF13439 Glycosyltransferase Family 4 J159_01163 PF02541 Ppx/GppA phosphatase family J159_01164 PF13089 Polyphosphate kinase N-terminal domain J159_01164 PF13090 Polyphosphate kinase C-terminal domain 2 J159_01164 PF17941 Polyphosphate kinase C-terminal domain 1 J159_01164 PF02503 Polyphosphate kinase middle domain J159_01165 PF11808 Phosphate regulon sensor protein PhoR J159_01165 PF00989 PAS fold J159_01165 PF00512 His Kinase A (phospho-acceptor) domain J159_01165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_01166 PF00486 Transcriptional regulatory protein, C terminal J159_01166 PF00072 Response regulator receiver domain J159_01167 PF01435 Peptidase family M48 J159_01167 PF13181 Tetratricopeptide repeat J159_01168 PF00462 Glutaredoxin J159_01170 PF00180 Isocitrate/isopropylmalate dehydrogenase J159_01176 PF13276 HTH-like domain J159_01176 PF13333 Integrase core domain J159_01176 PF00665 Integrase core domain J159_01177 PF01527 Transposase J159_01200 PF01527 Transposase J159_01201 PF13333 Integrase core domain J159_01201 PF00665 Integrase core domain J159_01201 PF13276 HTH-like domain J159_01204 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_01204 PF00512 His Kinase A (phospho-acceptor) domain J159_01204 PF00989 PAS fold J159_01207 PF05697 Bacterial trigger factor protein (TF) J159_01207 PF05698 Bacterial trigger factor protein (TF) C-terminus J159_01208 PF00574 Clp protease J159_01209 PF10431 C-terminal, D2-small domain, of ClpB protein J159_01209 PF07724 AAA domain (Cdc48 subfamily) J159_01209 PF06689 ClpX C4-type zinc finger J159_01210 PF02190 ATP-dependent protease La (LON) substrate-binding domain J159_01210 PF05362 Lon protease (S16) C-terminal proteolytic domain J159_01210 PF00004 ATPase family associated with various cellular activities (AAA) J159_01211 PF00216 Bacterial DNA-binding protein J159_01217 PF01476 LysM domain J159_01217 PF05257 CHAP domain J159_01218 PF16123 Hydroxyacylglutathione hydrolase C-terminus J159_01218 PF00753 Metallo-beta-lactamase superfamily J159_01220 PF00075 RNase H J159_01221 PF00929 Exonuclease J159_01225 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J159_01227 PF12706 Beta-lactamase superfamily domain J159_01227 PF00753 Metallo-beta-lactamase superfamily J159_01228 PF06463 Molybdenum Cofactor Synthesis C J159_01228 PF04055 Radical SAM superfamily J159_01229 PF01967 MoaC family J159_01230 PF02597 ThiS family J159_01231 PF02391 MoaE protein J159_01234 PF01527 Transposase J159_01235 PF13333 Integrase core domain J159_01235 PF00665 Integrase core domain J159_01235 PF13276 HTH-like domain J159_01241 PF12169 DNA polymerase III subunits gamma and tau domain III J159_01241 PF12170 DNA polymerase III tau subunit V interacting with alpha J159_01241 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding J159_01242 PF02575 YbaB/EbfC DNA-binding family J159_01243 PF02132 RecR protein J159_01243 PF13662 Toprim domain J159_01244 PF01230 HIT domain J159_01246 PF11992 Domain of unknown function (DUF3488) J159_01246 PF13559 Domain of unknown function (DUF4129) J159_01246 PF01841 Transglutaminase-like superfamily J159_01248 PF07726 ATPase family associated with various cellular activities (AAA) J159_01248 PF17863 AAA lid domain J159_01252 PF02545 Maf-like protein J159_01253 PF02620 Large ribosomal RNA subunit accumulation protein YceD J159_01254 PF01783 Ribosomal L32p protein family J159_01255 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J159_01255 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J159_01257 PF00698 Acyl transferase domain J159_01259 PF00550 Phosphopantetheine attachment site J159_01260 PF02801 Beta-ketoacyl synthase, C-terminal domain J159_01260 PF00109 Beta-ketoacyl synthase, N-terminal domain J159_01261 PF00425 chorismate binding enzyme J159_01261 PF04715 Anthranilate synthase component I, N terminal region J159_01262 PF02618 YceG-like family J159_01263 PF09115 DNA polymerase III, delta subunit, C terminal J159_01267 PF00158 Sigma-54 interaction domain J159_01267 PF06506 Propionate catabolism activator J159_01267 PF02954 Bacterial regulatory protein, Fis family J159_01269 PF00285 Citrate synthase, C-terminal domain J159_01270 PF00330 Aconitase family (aconitate hydratase) J159_01270 PF00694 Aconitase C-terminal domain J159_01271 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH J159_01273 PF04303 PrpF protein J159_01274 PF07715 TonB-dependent Receptor Plug Domain J159_01274 PF00593 TonB dependent receptor J159_01276 PF11974 Bacterial alpha-2-macroglobulin MG3 domain J159_01276 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain J159_01276 PF17962 Bacterial macroglobulin domain 6 J159_01276 PF07703 Alpha-2-macroglobulin bait region domain J159_01276 PF00207 Alpha-2-macroglobulin family J159_01276 PF01835 MG2 domain J159_01276 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain J159_01276 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain J159_01279 PF00905 Penicillin binding protein transpeptidase domain J159_01279 PF00912 Transglycosylase J159_01279 PF06832 Penicillin-Binding Protein C-terminus Family J159_01281 PF08534 Redoxin J159_01283 PF01556 DnaJ C terminal domain J159_01283 PF00226 DnaJ domain J159_01285 PF00072 Response regulator receiver domain J159_01287 PF01145 SPFH domain / Band 7 family J159_01287 PF12221 Bacterial membrane protein N terminal J159_01288 PF01145 SPFH domain / Band 7 family J159_01290 PF00709 Adenylosuccinate synthetase J159_01291 PF11838 ERAP1-like C-terminal domain J159_01291 PF01433 Peptidase family M1 domain J159_01294 PF00440 Bacterial regulatory proteins, tetR family J159_01307 PF00300 Histidine phosphatase superfamily (branch 1) J159_01307 PF13456 Reverse transcriptase-like J159_01308 PF01256 Carbohydrate kinase J159_01310 PF00723 Glycosyl hydrolases family 15 J159_01312 PF07971 Glycosyl hydrolase family 92 J159_01312 PF17678 Glycosyl hydrolase family 92 N-terminal domain J159_01316 PF07992 Pyridine nucleotide-disulphide oxidoreductase J159_01320 PF17755 UvrA DNA-binding domain J159_01321 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J159_01321 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J159_01322 PF03450 CO dehydrogenase flavoprotein C-terminal domain J159_01322 PF00941 FAD binding domain in molybdopterin dehydrogenase J159_01323 PF00111 2Fe-2S iron-sulfur cluster binding domain J159_01323 PF01799 [2Fe-2S] binding domain J159_01330 PF00717 Peptidase S24-like J159_01330 PF01726 LexA DNA binding domain J159_01333 PF02811 PHP domain J159_01333 PF07733 Bacterial DNA polymerase III alpha NTPase domain J159_01333 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J159_01333 PF14579 Helix-hairpin-helix motif J159_01334 PF00326 Prolyl oligopeptidase family J159_01336 PF03169 OPT oligopeptide transporter protein J159_01339 PF07676 WD40-like Beta Propeller Repeat J159_01339 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J159_01339 PF00326 Prolyl oligopeptidase family J159_01342 PF02311 AraC-like ligand binding domain J159_01342 PF12833 Helix-turn-helix domain J159_01347 PF18011 C-terminal domain found in long catalases J159_01347 PF06628 Catalase-related immune-responsive J159_01347 PF00199 Catalase J159_01348 PF00248 Aldo/keto reductase family J159_01349 PF00135 Carboxylesterase family J159_01350 PF02347 Glycine cleavage system P-protein J159_01353 PF07690 Major Facilitator Superfamily J159_01356 PF00884 Sulfatase J159_01356 PF08019 Phosphoethanolamine transferase EptA/EptB J159_01359 PF00072 Response regulator receiver domain J159_01359 PF00486 Transcriptional regulatory protein, C terminal J159_01360 PF08521 Two-component sensor kinase N-terminal J159_01360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_01360 PF00512 His Kinase A (phospho-acceptor) domain J159_01362 PF03776 Septum formation topological specificity factor MinE J159_01363 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J159_01364 PF05209 Septum formation inhibitor MinC, N-terminal domain J159_01364 PF03775 Septum formation inhibitor MinC, C-terminal domain J159_01366 PF07730 Histidine kinase J159_01367 PF00196 Bacterial regulatory proteins, luxR family J159_01367 PF00072 Response regulator receiver domain J159_01370 PF00730 HhH-GPD superfamily base excision DNA repair protein J159_01375 PF02222 ATP-grasp domain J159_01377 PF04377 Arginine-tRNA-protein transferase, C terminus J159_01377 PF04376 Arginine-tRNA-protein transferase, N terminus J159_01383 PF00378 Enoyl-CoA hydratase/isomerase J159_01386 PF00005 ABC transporter J159_01386 PF17755 UvrA DNA-binding domain J159_01386 PF17760 UvrA interaction domain J159_01387 PF00829 Ribosomal prokaryotic L21 protein J159_01388 PF01016 Ribosomal L27 protein J159_01389 PF01018 GTP1/OBG J159_01389 PF01926 50S ribosome-binding GTPase J159_01390 PF01649 Ribosomal protein S20 J159_01391 PF03023 Lipid II flippase MurJ J159_01392 PF06574 FAD synthetase J159_01392 PF01687 Riboflavin kinase J159_01393 PF08264 Anticodon-binding domain of tRNA J159_01393 PF00133 tRNA synthetases class I (I, L, M and V) J159_01393 PF06827 Zinc finger found in FPG and IleRS J159_01394 PF01252 Signal peptidase (SPase) II J159_01395 PF02401 LytB protein J159_01397 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J159_01397 PF06481 COX Aromatic Rich Motif J159_01398 PF00115 Cytochrome C and Quinol oxidase polypeptide I J159_01399 PF00510 Cytochrome c oxidase subunit III J159_01400 PF03626 Prokaryotic Cytochrome C oxidase subunit IV J159_01402 PF18073 Rubredoxin metal binding domain J159_01403 PF05656 Protein of unknown function (DUF805) J159_01405 PF12833 Helix-turn-helix domain J159_01406 PF00183 Hsp90 protein J159_01406 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_01408 PF01740 STAS domain J159_01408 PF08678 Rsbr N terminal J159_01409 PF01740 STAS domain J159_01410 PF13581 Histidine kinase-like ATPase domain J159_01412 PF17149 Periplasmic sensor domain found in signal transduction proteins J159_01412 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_01412 PF00672 HAMP domain J159_01412 PF00072 Response regulator receiver domain J159_01412 PF01627 Hpt domain J159_01412 PF00512 His Kinase A (phospho-acceptor) domain J159_01413 PF00512 His Kinase A (phospho-acceptor) domain J159_01413 PF08448 PAS fold J159_01413 PF00072 Response regulator receiver domain J159_01413 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_01413 PF13188 PAS domain J159_01414 PF04616 Glycosyl hydrolases family 43 J159_01414 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J159_01415 PF07715 TonB-dependent Receptor Plug Domain J159_01415 PF00593 TonB dependent receptor J159_01416 PF00085 Thioredoxin J159_01417 PF07237 Protein of unknown function (DUF1428) J159_01418 PF13493 Domain of unknown function (DUF4118) J159_01418 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_01418 PF13492 GAF domain J159_01418 PF02702 Osmosensitive K+ channel His kinase sensor domain J159_01418 PF00512 His Kinase A (phospho-acceptor) domain J159_01419 PF01339 CheB methylesterase J159_01420 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J159_01420 PF00072 Response regulator receiver domain J159_01420 PF00672 HAMP domain J159_01420 PF01627 Hpt domain J159_01420 PF00512 His Kinase A (phospho-acceptor) domain J159_01420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_01421 PF00072 Response regulator receiver domain J159_01421 PF13426 PAS domain J159_01421 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_01422 PF00072 Response regulator receiver domain J159_01423 PF00722 Glycosyl hydrolases family 16 J159_01424 PF06964 Alpha-L-arabinofuranosidase C-terminal domain J159_01425 PF01263 Aldose 1-epimerase J159_01426 PF01578 Cytochrome C assembly protein J159_01427 PF00448 SRP54-type protein, GTPase domain J159_01427 PF02881 SRP54-type protein, helical bundle domain J159_01427 PF02978 Signal peptide binding domain J159_01428 PF03060 Nitronate monooxygenase J159_01429 PF01063 Amino-transferase class IV J159_01430 PF00886 Ribosomal protein S16 J159_01431 PF05239 PRC-barrel domain J159_01431 PF01782 RimM N-terminal domain J159_01432 PF01746 tRNA (Guanine-1)-methyltransferase J159_01433 PF01245 Ribosomal protein L19 J159_01434 PF01554 MatE J159_01435 PF01554 MatE J159_01438 PF01479 S4 domain J159_01439 PF00141 Peroxidase J159_01441 PF00488 MutS domain V J159_01441 PF05192 MutS domain III J159_01441 PF05190 MutS family domain IV J159_01441 PF01624 MutS domain I J159_01441 PF05188 MutS domain II J159_01444 PF03527 RHS protein J159_01444 PF05593 RHS Repeat J159_01448 PF00703 Glycosyl hydrolases family 2 J159_01448 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J159_01448 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J159_01448 PF16355 Domain of unknown function (DUF4982) J159_01448 PF02837 Glycosyl hydrolases family 2, sugar binding domain J159_01449 PF07745 Glycosyl hydrolase family 53 J159_01451 PF06114 IrrE N-terminal-like domain J159_01451 PF09856 Predicted transcriptional regulator (DUF2083) J159_01451 PF01381 Helix-turn-helix J159_01452 PF00171 Aldehyde dehydrogenase family J159_01453 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J159_01453 PF02770 Acyl-CoA dehydrogenase, middle domain J159_01453 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J159_01454 PF00378 Enoyl-CoA hydratase/isomerase J159_01455 PF00378 Enoyl-CoA hydratase/isomerase J159_01455 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J159_01455 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J159_01456 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J159_01456 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J159_01457 PF01545 Cation efflux family J159_01458 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J159_01458 PF00378 Enoyl-CoA hydratase/isomerase J159_01458 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J159_01459 PF08281 Sigma-70, region 4 J159_01459 PF04542 Sigma-70 region 2 J159_01461 PF13180 PDZ domain J159_01462 PF00679 Elongation factor G C-terminus J159_01462 PF00009 Elongation factor Tu GTP binding domain J159_01462 PF03144 Elongation factor Tu domain 2 J159_01462 PF06421 GTP-binding protein LepA C-terminus J159_01463 PF10502 Signal peptidase, peptidase S26 J159_01465 PF00035 Double-stranded RNA binding motif J159_01465 PF14622 Ribonuclease-III-like J159_01466 PF07650 KH domain J159_01466 PF01926 50S ribosome-binding GTPase J159_01467 PF02565 Recombination protein O C terminal J159_01467 PF11967 Recombination protein O N terminal J159_01469 PF05958 tRNA (Uracil-5-)-methyltransferase J159_01471 PF01323 DSBA-like thioredoxin domain J159_01472 PF01593 Flavin containing amine oxidoreductase J159_01473 PF04244 Deoxyribodipyrimidine photo-lyase-related protein J159_01474 PF00933 Glycosyl hydrolase family 3 N terminal domain J159_01476 PF01048 Phosphorylase superfamily J159_01477 PF00313 'Cold-shock' DNA-binding domain J159_01478 PF01494 FAD binding domain J159_01480 PF00271 Helicase conserved C-terminal domain J159_01480 PF00270 DEAD/DEAH box helicase J159_01480 PF08494 DEAD/H associated J159_01481 PF04675 DNA ligase N terminus J159_01481 PF01068 ATP dependent DNA ligase domain J159_01481 PF04679 ATP dependent DNA ligase C terminal region J159_01483 PF04675 DNA ligase N terminus J159_01483 PF01068 ATP dependent DNA ligase domain J159_01483 PF04679 ATP dependent DNA ligase C terminal region J159_01486 PF00990 Diguanylate cyclase, GGDEF domain J159_01486 PF00072 Response regulator receiver domain J159_01489 PF02803 Thiolase, C-terminal domain J159_01489 PF00108 Thiolase, N-terminal domain J159_01490 PF12951 Passenger-associated-transport-repeat J159_01490 PF00082 Subtilase family J159_01490 PF03797 Autotransporter beta-domain J159_01491 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J159_01491 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain J159_01493 PF01863 Protein of unknown function DUF45 J159_01494 PF07043 Protein of unknown function (DUF1328) J159_01496 PF01258 Prokaryotic dksA/traR C4-type zinc finger J159_01500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J159_01502 PF03831 PhnA domain J159_01502 PF08274 PhnA Zinc-Ribbon J159_01503 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J159_01504 PF07690 Major Facilitator Superfamily J159_01511 PF03706 Lysylphosphatidylglycerol synthase TM region J159_01511 PF09924 Uncharacterised conserved protein (DUF2156) J159_01514 PF01042 Endoribonuclease L-PSP J159_01523 PF04545 Sigma-70, region 4 J159_01523 PF04542 Sigma-70 region 2 J159_01526 PF04060 Putative Fe-S cluster J159_01528 PF09334 tRNA synthetases class I (M) J159_01528 PF01588 Putative tRNA binding domain J159_01531 PF00005 ABC transporter J159_01531 PF13732 Domain of unknown function (DUF4162) J159_01532 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J159_01533 PF00324 Amino acid permease J159_01534 PF02574 Homocysteine S-methyltransferase J159_01536 PF02592 Putative vitamin uptake transporter J159_01540 PF03551 Transcriptional regulator PadR-like family J159_01547 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J159_01548 PF02811 PHP domain J159_01548 PF14579 Helix-hairpin-helix motif J159_01548 PF01336 OB-fold nucleic acid binding domain J159_01548 PF07733 Bacterial DNA polymerase III alpha NTPase domain J159_01548 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J159_01549 PF01351 Ribonuclease HII J159_01550 PF02684 Lipid-A-disaccharide synthetase J159_01551 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 J159_01551 PF00132 Bacterial transferase hexapeptide (six repeats) J159_01552 PF07977 FabA-like domain J159_01553 PF00132 Bacterial transferase hexapeptide (six repeats) J159_01553 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD J159_01555 PF01103 Surface antigen J159_01555 PF07244 Surface antigen variable number repeat J159_01556 PF17820 PDZ domain J159_01556 PF02163 Peptidase family M50 J159_01557 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J159_01557 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J159_01557 PF13288 DXP reductoisomerase C-terminal domain J159_01559 PF01255 Putative undecaprenyl diphosphate synthase J159_01560 PF01765 Ribosome recycling factor J159_01561 PF00696 Amino acid kinase family J159_01562 PF00072 Response regulator receiver domain J159_01562 PF00990 Diguanylate cyclase, GGDEF domain J159_01563 PF00889 Elongation factor TS J159_01564 PF00318 Ribosomal protein S2 J159_01571 PF00557 Metallopeptidase family M24 J159_01572 PF08335 GlnD PII-uridylyltransferase J159_01572 PF01966 HD domain J159_01572 PF01909 Nucleotidyltransferase domain J159_01573 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal J159_01573 PF14602 Hexapeptide repeat of succinyl-transferase J159_01573 PF00132 Bacterial transferase hexapeptide (six repeats) J159_01574 PF03960 ArsC family J159_01575 PF01546 Peptidase family M20/M25/M40 J159_01575 PF07687 Peptidase dimerisation domain J159_01576 PF00733 Asparagine synthase J159_01576 PF13537 Glutamine amidotransferase domain J159_01578 PF07715 TonB-dependent Receptor Plug Domain J159_01578 PF00593 TonB dependent receptor J159_01580 PF01804 Penicillin amidase J159_01581 PF00210 Ferritin-like domain J159_01582 PF05724 Thiopurine S-methyltransferase (TPMT) J159_01584 PF00521 DNA gyrase/topoisomerase IV, subunit A J159_01584 PF03989 DNA gyrase C-terminal domain, beta-propeller J159_01587 PF02321 Outer membrane efflux protein J159_01588 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J159_01588 PF00529 HlyD membrane-fusion protein of T1SS J159_01589 PF07690 Major Facilitator Superfamily J159_01591 PF01915 Glycosyl hydrolase family 3 C-terminal domain J159_01591 PF14310 Fibronectin type III-like domain J159_01591 PF00933 Glycosyl hydrolase family 3 N terminal domain J159_01593 PF00854 POT family J159_01598 PF12802 MarR family J159_01599 PF01432 Peptidase family M3 J159_01600 PF00255 Glutathione peroxidase J159_01601 PF00175 Oxidoreductase NAD-binding domain J159_01601 PF00970 Oxidoreductase FAD-binding domain J159_01602 PF00005 ABC transporter J159_01603 PF05681 Fumarate hydratase (Fumerase) J159_01603 PF05683 Fumarase C-terminus J159_01605 PF00484 Carbonic anhydrase J159_01606 PF02253 Phospholipase A1 J159_01608 PF00313 'Cold-shock' DNA-binding domain J159_01611 PF00899 ThiF family J159_01612 PF01026 TatD related DNase J159_01615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J159_01615 PF02770 Acyl-CoA dehydrogenase, middle domain J159_01615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J159_01617 PF00043 Glutathione S-transferase, C-terminal domain J159_01617 PF02798 Glutathione S-transferase, N-terminal domain J159_01618 PF00733 Asparagine synthase J159_01618 PF13537 Glutamine amidotransferase domain J159_01619 PF03358 NADPH-dependent FMN reductase J159_01620 PF00772 DnaB-like helicase N terminal domain J159_01620 PF03796 DnaB-like helicase C terminal domain J159_01621 PF03441 FAD binding domain of DNA photolyase J159_01621 PF00875 DNA photolyase J159_01622 PF05736 OprF membrane domain J159_01622 PF00691 OmpA family J159_01624 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_01624 PF03466 LysR substrate binding domain J159_01627 PF00529 HlyD membrane-fusion protein of T1SS J159_01627 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J159_01628 PF00873 AcrB/AcrD/AcrF family J159_01629 PF00106 short chain dehydrogenase J159_01630 PF02321 Outer membrane efflux protein J159_01631 PF00990 Diguanylate cyclase, GGDEF domain J159_01631 PF08448 PAS fold J159_01633 PF00990 Diguanylate cyclase, GGDEF domain J159_01650 PF01527 Transposase J159_01659 PF00082 Subtilase family J159_01660 PF01668 SmpB protein J159_01661 PF03364 Polyketide cyclase / dehydrase and lipid transport J159_01662 PF03658 RnfH family Ubiquitin J159_01663 PF04355 SmpA / OmlA family J159_01664 PF01475 Ferric uptake regulator family J159_01665 PF02463 RecF/RecN/SMC N terminal domain J159_01666 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding J159_01666 PF01628 HrcA protein C terminal domain J159_01667 PF01025 GrpE J159_01668 PF00012 Hsp70 protein J159_01669 PF00684 DnaJ central domain J159_01669 PF01556 DnaJ C terminal domain J159_01669 PF00226 DnaJ domain J159_01671 PF08543 Phosphomethylpyrimidine kinase J159_01676 PF00664 ABC transporter transmembrane region J159_01676 PF00005 ABC transporter J159_01676 PF03412 Peptidase C39 family J159_01677 PF03466 LysR substrate binding domain J159_01677 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_01678 PF00005 ABC transporter J159_01678 PF00664 ABC transporter transmembrane region J159_01679 PF01205 Uncharacterized protein family UPF0029 J159_01680 PF03641 Possible lysine decarboxylase J159_01681 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J159_01681 PF07992 Pyridine nucleotide-disulphide oxidoreductase J159_01682 PF00364 Biotin-requiring enzyme J159_01682 PF02817 e3 binding domain J159_01682 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J159_01683 PF16870 2-oxoglutarate dehydrogenase C-terminal J159_01683 PF16078 2-oxoglutarate dehydrogenase N-terminus J159_01683 PF00676 Dehydrogenase E1 component J159_01683 PF02779 Transketolase, pyrimidine binding domain J159_01685 PF08007 Cupin superfamily protein J159_01687 PF08328 Adenylosuccinate lyase C-terminal J159_01687 PF00206 Lyase J159_01689 PF01595 Cyclin M transmembrane N-terminal domain J159_01689 PF00571 CBS domain J159_01689 PF03471 Transporter associated domain J159_01690 PF00206 Lyase J159_01690 PF10415 Fumarase C C-terminus J159_01695 PF00005 ABC transporter J159_01696 PF00392 Bacterial regulatory proteins, gntR family J159_01698 PF00255 Glutathione peroxidase J159_01699 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J159_01699 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J159_01700 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J159_01700 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J159_01700 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J159_01701 PF04102 SlyX J159_01704 PF00356 Bacterial regulatory proteins, lacI family J159_01705 PF07690 Major Facilitator Superfamily J159_01706 PF00294 pfkB family carbohydrate kinase J159_01708 PF02607 B12 binding domain J159_01708 PF02574 Homocysteine S-methyltransferase J159_01708 PF02310 B12 binding domain J159_01708 PF02965 Vitamin B12 dependent methionine synthase, activation domain J159_01708 PF00809 Pterin binding enzyme J159_01709 PF02574 Homocysteine S-methyltransferase J159_01709 PF00809 Pterin binding enzyme J159_01710 PF01209 ubiE/COQ5 methyltransferase family J159_01711 PF02770 Acyl-CoA dehydrogenase, middle domain J159_01711 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J159_01711 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J159_01714 PF00773 RNB domain J159_01714 PF00575 S1 RNA binding domain J159_01714 PF17876 Cold shock domain J159_01714 PF08461 Ribonuclease R winged-helix domain J159_01714 PF08206 Ribonuclease B OB domain J159_01716 PF00588 SpoU rRNA Methylase family J159_01716 PF08032 RNA 2'-O ribose methyltransferase substrate binding J159_01717 PF07694 5TMR of 5TMR-LYT J159_01717 PF00990 Diguanylate cyclase, GGDEF domain J159_01718 PF00929 Exonuclease J159_01720 PF01895 PhoU domain J159_01721 PF00005 ABC transporter J159_01722 PF00528 Binding-protein-dependent transport system inner membrane component J159_01723 PF00528 Binding-protein-dependent transport system inner membrane component J159_01724 PF12849 PBP superfamily domain J159_01725 PF12849 PBP superfamily domain J159_01728 PF00484 Carbonic anhydrase J159_01729 PF00916 Sulfate permease family J159_01729 PF01740 STAS domain J159_01730 PF00633 Helix-hairpin-helix motif J159_01730 PF10576 Iron-sulfur binding domain of endonuclease III J159_01730 PF00730 HhH-GPD superfamily base excision DNA repair protein J159_01732 PF00378 Enoyl-CoA hydratase/isomerase J159_01733 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J159_01733 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J159_01734 PF00293 NUDIX domain J159_01735 PF00581 Rhodanese-like domain J159_01742 PF01170 Putative RNA methylase family UPF0020 J159_01742 PF10672 S-adenosylmethionine-dependent methyltransferase J159_01742 PF02926 THUMP domain J159_01743 PF01513 ATP-NAD kinase J159_01747 PF00929 Exonuclease J159_01747 PF08411 Exonuclease C-terminal J159_01748 PF01494 FAD binding domain J159_01749 PF00266 Aminotransferase class-V J159_01751 PF06052 3-hydroxyanthranilic acid dioxygenase J159_01752 PF00484 Carbonic anhydrase J159_01761 PF00072 Response regulator receiver domain J159_01761 PF00196 Bacterial regulatory proteins, luxR family J159_01764 PF04299 Putative FMN-binding domain J159_01768 PF01336 OB-fold nucleic acid binding domain J159_01768 PF00152 tRNA synthetases class II (D, K and N) J159_01769 PF01521 Iron-sulphur cluster biosynthesis J159_01770 PF01250 Ribosomal protein S6 J159_01771 PF01084 Ribosomal protein S18 J159_01772 PF01281 Ribosomal protein L9, N-terminal domain J159_01772 PF03948 Ribosomal protein L9, C-terminal domain J159_01773 PF02463 RecF/RecN/SMC N terminal domain J159_01774 PF04354 ZipA, C-terminal FtsZ-binding domain J159_01776 PF00155 Aminotransferase class I and II J159_01777 PF03120 NAD-dependent DNA ligase OB-fold domain J159_01777 PF01653 NAD-dependent DNA ligase adenylation domain J159_01777 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J159_01777 PF00533 BRCA1 C Terminus (BRCT) domain J159_01777 PF12826 Helix-hairpin-helix motif J159_01778 PF00152 tRNA synthetases class II (D, K and N) J159_01780 PF01008 Initiation factor 2 subunit family J159_01781 PF00521 DNA gyrase/topoisomerase IV, subunit A J159_01781 PF03989 DNA gyrase C-terminal domain, beta-propeller J159_01782 PF13360 PQQ-like domain J159_01784 PF01175 Urocanase Rossmann-like domain J159_01784 PF17392 Urocanase C-terminal domain J159_01784 PF17391 Urocanase N-terminal domain J159_01786 PF00221 Aromatic amino acid lyase J159_01787 PF07969 Amidohydrolase family J159_01789 PF07702 UTRA domain J159_01789 PF00392 Bacterial regulatory proteins, gntR family J159_01795 PF01794 Ferric reductase like transmembrane component J159_01796 PF00174 Oxidoreductase molybdopterin binding domain J159_01797 PF00266 Aminotransferase class-V J159_01798 PF01842 ACT domain J159_01798 PF01817 Chorismate mutase type II J159_01798 PF00800 Prephenate dehydratase J159_01799 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J159_01801 PF03544 Gram-negative bacterial TonB protein C-terminal J159_01802 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J159_01802 PF02403 Seryl-tRNA synthetase N-terminal domain J159_01803 PF02525 Flavodoxin-like fold J159_01804 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_01804 PF03466 LysR substrate binding domain J159_01807 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_01807 PF02203 Tar ligand binding domain homologue J159_01807 PF00672 HAMP domain J159_01810 PF08448 PAS fold J159_01810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_01810 PF13188 PAS domain J159_01810 PF00072 Response regulator receiver domain J159_01810 PF00512 His Kinase A (phospho-acceptor) domain J159_01811 PF00486 Transcriptional regulatory protein, C terminal J159_01811 PF00072 Response regulator receiver domain J159_01812 PF06745 KaiC J159_01813 PF13426 PAS domain J159_01813 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_01813 PF00072 Response regulator receiver domain J159_01815 PF03918 Cytochrome C biogenesis protein J159_01816 PF08534 Redoxin J159_01817 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J159_01817 PF01578 Cytochrome C assembly protein J159_01818 PF03100 CcmE J159_01820 PF01578 Cytochrome C assembly protein J159_01821 PF00082 Subtilase family J159_01823 PF04542 Sigma-70 region 2 J159_01823 PF08281 Sigma-70, region 4 J159_01826 PF00034 Cytochrome c J159_01829 PF05523 WxcM-like, C-terminal J159_01833 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J159_01834 PF01943 Polysaccharide biosynthesis protein J159_01835 PF00535 Glycosyl transferase family 2 J159_01838 PF08241 Methyltransferase domain J159_01842 PF13579 Glycosyl transferase 4-like domain J159_01842 PF00534 Glycosyl transferases group 1 J159_01845 PF00005 ABC transporter J159_01846 PF00005 ABC transporter J159_01846 PF00664 ABC transporter transmembrane region J159_01847 PF07690 Major Facilitator Superfamily J159_01848 PF00296 Luciferase-like monooxygenase J159_01851 PF00571 CBS domain J159_01851 PF01595 Cyclin M transmembrane N-terminal domain J159_01851 PF03471 Transporter associated domain J159_01853 PF01384 Phosphate transporter family J159_01856 PF00204 DNA gyrase B J159_01856 PF00986 DNA gyrase B subunit, carboxyl terminus J159_01856 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_01856 PF01751 Toprim domain J159_01858 PF00117 Glutamine amidotransferase class-I J159_01858 PF06418 CTP synthase N-terminus J159_01859 PF00793 DAHP synthetase I family J159_01861 PF00113 Enolase, C-terminal TIM barrel domain J159_01861 PF03952 Enolase, N-terminal domain J159_01862 PF04977 Septum formation initiator J159_01863 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J159_01864 PF02542 YgbB family J159_01865 PF01142 tRNA pseudouridine synthase D (TruD) J159_01866 PF01713 Smr domain J159_01867 PF01975 Survival protein SurE J159_01869 PF09335 SNARE associated Golgi protein J159_01870 PF01551 Peptidase family M23 J159_01870 PF01476 LysM domain J159_01872 PF04430 Protein of unknown function (DUF498/DUF598) J159_01873 PF01985 CRS1 / YhbY (CRM) domain J159_01874 PF01728 FtsJ-like methyltransferase J159_01875 PF01434 Peptidase family M41 J159_01875 PF17862 AAA+ lid domain J159_01875 PF00004 ATPase family associated with various cellular activities (AAA) J159_01875 PF06480 FtsH Extracellular J159_01876 PF00809 Pterin binding enzyme J159_01878 PF17209 Hfq protein J159_01879 PF01926 50S ribosome-binding GTPase J159_01879 PF13167 GTP-binding GTPase N-terminal J159_01879 PF16360 GTP-binding GTPase Middle Region J159_01880 PF02464 Competence-damaged protein J159_01881 PF03109 ABC1 family J159_01882 PF01726 LexA DNA binding domain J159_01882 PF00717 Peptidase S24-like J159_01883 PF00154 recA bacterial DNA recombination protein J159_01884 PF02631 RecX family J159_01885 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J159_01885 PF01411 tRNA synthetases class II (A) J159_01885 PF02272 DHHA1 domain J159_01886 PF02599 Global regulator protein family J159_01888 PF08447 PAS fold J159_01888 PF13426 PAS domain J159_01888 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_01889 PF02678 Pirin J159_01889 PF17954 Quercetinase C-terminal cupin domain J159_01890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_01890 PF03466 LysR substrate binding domain J159_01895 PF02581 Thiamine monophosphate synthase J159_01895 PF08543 Phosphomethylpyrimidine kinase J159_01898 PF02562 PhoH-like protein J159_01898 PF13638 PIN domain J159_01899 PF00578 AhpC/TSA family J159_01902 PF00701 Dihydrodipicolinate synthetase family J159_01904 PF11953 Domain of unknown function (DUF3470) J159_01904 PF00037 4Fe-4S binding domain J159_01905 PF05035 2-keto-3-deoxy-galactonokinase J159_01906 PF08450 SMP-30/Gluconolactonase/LRE-like region J159_01907 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J159_01907 PF13378 Enolase C-terminal domain-like J159_01908 PF01081 KDPG and KHG aldolase J159_01910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_01910 PF03466 LysR substrate binding domain J159_01913 PF00942 Cellulose binding domain J159_01913 PF03442 Carbohydrate binding domain X2 J159_01916 PF01055 Glycosyl hydrolases family 31 J159_01916 PF16338 Domain of unknown function (DUF4968) J159_01916 PF17137 Domain of unknown function (DUF5110) J159_01918 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J159_01918 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J159_01920 PF00083 Sugar (and other) transporter J159_01923 PF01520 N-acetylmuramoyl-L-alanine amidase J159_01924 PF02649 Type I GTP cyclohydrolase folE2 J159_01928 PF12627 Probable RNA and SrmB- binding site of polymerase A J159_01928 PF12626 Polymerase A arginine-rich C-terminus J159_01928 PF01743 Poly A polymerase head domain J159_01929 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J159_01930 PF02548 Ketopantoate hydroxymethyltransferase J159_01931 PF02569 Pantoate-beta-alanine ligase J159_01932 PF02261 Aspartate decarboxylase J159_01933 PF00342 Phosphoglucose isomerase J159_01937 PF14310 Fibronectin type III-like domain J159_01937 PF00933 Glycosyl hydrolase family 3 N terminal domain J159_01937 PF01915 Glycosyl hydrolase family 3 C-terminal domain J159_01938 PF00474 Sodium:solute symporter family J159_01939 PF00563 EAL domain J159_01939 PF01590 GAF domain J159_01939 PF00990 Diguanylate cyclase, GGDEF domain J159_01939 PF00360 Phytochrome region J159_01940 PF02013 Cellulose or protein binding domain J159_01940 PF00150 Cellulase (glycosyl hydrolase family 5) J159_01941 PF00072 Response regulator receiver domain J159_01943 PF04551 GcpE protein J159_01944 PF01569 PAP2 superfamily J159_01945 PF07690 Major Facilitator Superfamily J159_01946 PF01177 Asp/Glu/Hydantoin racemase J159_01947 PF00892 EamA-like transporter family J159_01948 PF01565 FAD binding domain J159_01948 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J159_01949 PF01180 Dihydroorotate dehydrogenase J159_01952 PF00171 Aldehyde dehydrogenase family J159_01955 PF00535 Glycosyl transferase family 2 J159_01956 PF01522 Polysaccharide deacetylase J159_01956 PF14883 Hypothetical glycosyl hydrolase family 13 J159_01958 PF08479 POTRA domain, ShlB-type J159_01958 PF17287 POTRA domain J159_01958 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB J159_01959 PF13332 Hemagglutinin repeat J159_01959 PF05594 Haemagluttinin repeat J159_01959 PF04829 Pre-toxin domain with VENN motif J159_01960 PF13332 Hemagglutinin repeat J159_01960 PF04829 Pre-toxin domain with VENN motif J159_01960 PF05594 Haemagluttinin repeat J159_01962 PF05860 haemagglutination activity domain J159_01962 PF13332 Hemagglutinin repeat J159_01962 PF05594 Haemagluttinin repeat J159_01962 PF13018 Extended Signal Peptide of Type V secretion system J159_01962 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain J159_01964 PF00742 Homoserine dehydrogenase J159_01964 PF13840 ACT domain J159_01964 PF01842 ACT domain J159_01964 PF00696 Amino acid kinase family J159_01964 PF03447 Homoserine dehydrogenase, NAD binding domain J159_01965 PF00288 GHMP kinases N terminal domain J159_01965 PF08544 GHMP kinases C terminal J159_01967 PF14821 Threonine synthase N terminus J159_01967 PF00291 Pyridoxal-phosphate dependent enzyme J159_01969 PF13545 Crp-like helix-turn-helix domain J159_01969 PF00027 Cyclic nucleotide-binding domain J159_01970 PF13393 Histidyl-tRNA synthetase J159_01970 PF03129 Anticodon binding domain J159_01972 PF08029 HisG, C-terminal domain J159_01972 PF01634 ATP phosphoribosyltransferase J159_01973 PF00815 Histidinol dehydrogenase J159_01974 PF00155 Aminotransferase class I and II J159_01975 PF00475 Imidazoleglycerol-phosphate dehydratase J159_01976 PF00117 Glutamine amidotransferase class-I J159_01977 PF00977 Histidine biosynthesis protein J159_01978 PF00977 Histidine biosynthesis protein J159_01979 PF01502 Phosphoribosyl-AMP cyclohydrolase J159_01979 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J159_01983 PF03079 ARD/ARD' family J159_01984 PF00596 Class II Aldolase and Adducin N-terminal domain J159_01985 PF13520 Amino acid permease J159_01986 PF13520 Amino acid permease J159_01988 PF01842 ACT domain J159_01988 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J159_01988 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J159_01989 PF01565 FAD binding domain J159_01989 PF02913 FAD linked oxidases, C-terminal domain J159_01993 PF08207 Elongation factor P (EF-P) KOW-like domain J159_01993 PF09285 Elongation factor P, C-terminal J159_01993 PF01132 Elongation factor P (EF-P) OB domain J159_01994 PF00106 short chain dehydrogenase J159_01995 PF00682 HMGL-like J159_01997 PF00378 Enoyl-CoA hydratase/isomerase J159_01999 PF02421 Ferrous iron transport protein B J159_01999 PF07670 Nucleoside recognition J159_01999 PF07664 Ferrous iron transport protein B C terminus J159_02002 PF00155 Aminotransferase class I and II J159_02003 PF03473 MOSC domain J159_02003 PF03475 3-alpha domain J159_02004 PF05173 Dihydrodipicolinate reductase, C-terminus J159_02004 PF01113 Dihydrodipicolinate reductase, N-terminus J159_02005 PF00117 Glutamine amidotransferase class-I J159_02005 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J159_02007 PF02142 MGS-like domain J159_02007 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J159_02007 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J159_02008 PF01272 Transcription elongation factor, GreA/GreB, C-term J159_02008 PF03449 Transcription elongation factor, N-terminal J159_02010 PF02272 DHHA1 domain J159_02010 PF17768 RecJ OB domain J159_02010 PF01368 DHH family J159_02018 PF00072 Response regulator receiver domain J159_02018 PF04397 LytTr DNA-binding domain J159_02019 PF00472 RF-1 domain J159_02019 PF03462 PCRF domain J159_02020 PF00152 tRNA synthetases class II (D, K and N) J159_02020 PF01336 OB-fold nucleic acid binding domain J159_02021 PF00072 Response regulator receiver domain J159_02022 PF00512 His Kinase A (phospho-acceptor) domain J159_02022 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_02022 PF00072 Response regulator receiver domain J159_02022 PF01627 Hpt domain J159_02023 PF00378 Enoyl-CoA hydratase/isomerase J159_02024 PF00501 AMP-binding enzyme J159_02024 PF13193 AMP-binding enzyme C-terminal domain J159_02026 PF00330 Aconitase family (aconitate hydratase) J159_02026 PF00694 Aconitase C-terminal domain J159_02029 PF00330 Aconitase family (aconitate hydratase) J159_02029 PF06434 Aconitate hydratase 2 N-terminus J159_02029 PF11791 Aconitate B N-terminal domain J159_02030 PF00561 alpha/beta hydrolase fold J159_02031 PF00563 EAL domain J159_02031 PF03707 Bacterial signalling protein N terminal repeat J159_02031 PF00990 Diguanylate cyclase, GGDEF domain J159_02032 PF00072 Response regulator receiver domain J159_02032 PF01339 CheB methylesterase J159_02033 PF03975 CheD chemotactic sensory transduction J159_02034 PF01739 CheR methyltransferase, SAM binding domain J159_02034 PF03705 CheR methyltransferase, all-alpha domain J159_02035 PF02203 Tar ligand binding domain homologue J159_02035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_02035 PF00672 HAMP domain J159_02036 PF02203 Tar ligand binding domain homologue J159_02036 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_02036 PF00672 HAMP domain J159_02037 PF00672 HAMP domain J159_02037 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_02037 PF02203 Tar ligand binding domain homologue J159_02038 PF00672 HAMP domain J159_02038 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_02038 PF02203 Tar ligand binding domain homologue J159_02039 PF02203 Tar ligand binding domain homologue J159_02039 PF00672 HAMP domain J159_02039 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_02040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_02040 PF00672 HAMP domain J159_02041 PF02203 Tar ligand binding domain homologue J159_02041 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_02041 PF00672 HAMP domain J159_02043 PF02203 Tar ligand binding domain homologue J159_02043 PF00672 HAMP domain J159_02043 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_02044 PF00672 HAMP domain J159_02044 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_02044 PF17200 Single Cache domain 2 J159_02044 PF00672 HAMP domain J159_02044 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_02044 PF17200 Single Cache domain 2 J159_02046 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_02046 PF00672 HAMP domain J159_02046 PF02203 Tar ligand binding domain homologue J159_02047 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_02047 PF02895 Signal transducing histidine kinase, homodimeric domain J159_02047 PF09078 CheY binding J159_02047 PF01584 CheW-like domain J159_02047 PF01627 Hpt domain J159_02048 PF00072 Response regulator receiver domain J159_02050 PF01584 CheW-like domain J159_02051 PF13614 AAA domain J159_02052 PF13677 Membrane MotB of proton-channel complex MotA/MotB J159_02052 PF00691 OmpA family J159_02053 PF01618 MotA/TolQ/ExbB proton channel family J159_02056 PF03793 PASTA domain J159_02056 PF00069 Protein kinase domain J159_02065 PF13276 HTH-like domain J159_02065 PF00665 Integrase core domain J159_02065 PF13333 Integrase core domain J159_02066 PF01527 Transposase J159_02072 PF13186 Iron-sulfur cluster-binding domain J159_02072 PF04055 Radical SAM superfamily J159_02075 PF07194 P2 response regulator binding domain J159_02075 PF01627 Hpt domain J159_02075 PF01584 CheW-like domain J159_02075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_02075 PF02895 Signal transducing histidine kinase, homodimeric domain J159_02076 PF04344 Chemotaxis phosphatase, CheZ J159_02077 PF00072 Response regulator receiver domain J159_02078 PF04542 Sigma-70 region 2 J159_02078 PF04545 Sigma-70, region 4 J159_02078 PF04539 Sigma-70 region 3 J159_02079 PF10609 NUBPL iron-transfer P-loop NTPase J159_02080 PF00448 SRP54-type protein, GTPase domain J159_02081 PF00771 FHIPEP family J159_02082 PF01312 FlhB HrpN YscU SpaS Family J159_02083 PF00990 Diguanylate cyclase, GGDEF domain J159_02083 PF03707 Bacterial signalling protein N terminal repeat J159_02083 PF00563 EAL domain J159_02084 PF00563 EAL domain J159_02084 PF00990 Diguanylate cyclase, GGDEF domain J159_02084 PF03707 Bacterial signalling protein N terminal repeat J159_02084 PF13188 PAS domain J159_02085 PF00563 EAL domain J159_02085 PF00990 Diguanylate cyclase, GGDEF domain J159_02085 PF13188 PAS domain J159_02085 PF03707 Bacterial signalling protein N terminal repeat J159_02086 PF01311 Bacterial export proteins, family 1 J159_02087 PF01313 Bacterial export proteins, family 3 J159_02089 PF00813 FliP family J159_02090 PF04347 Flagellar biosynthesis protein, FliO J159_02091 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J159_02092 PF02154 Flagellar motor switch protein FliM J159_02092 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J159_02096 PF18269 T3SS EscN ATPase C-terminal domain J159_02096 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J159_02098 PF14842 FliG N-terminal domain J159_02098 PF01706 FliG C-terminal domain J159_02098 PF14841 FliG middle domain J159_02099 PF08345 Flagellar M-ring protein C-terminal J159_02099 PF01514 Secretory protein of YscJ/FliF family J159_02100 PF02049 Flagellar hook-basal body complex protein FliE J159_02101 PF00534 Glycosyl transferases group 1 J159_02101 PF00535 Glycosyl transferase family 2 J159_02109 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J159_02109 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J159_02111 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J159_02112 PF00158 Sigma-54 interaction domain J159_02112 PF00072 Response regulator receiver domain J159_02112 PF02954 Bacterial regulatory protein, Fis family J159_02113 PF01339 CheB methylesterase J159_02113 PF00072 Response regulator receiver domain J159_02114 PF04963 Sigma-54 factor, core binding domain J159_02114 PF00309 Sigma-54 factor, Activator interacting domain (AID) J159_02114 PF04552 Sigma-54, DNA binding domain J159_02115 PF00196 Bacterial regulatory proteins, luxR family J159_02115 PF00072 Response regulator receiver domain J159_02118 PF02561 Flagellar protein FliS J159_02119 PF07196 Flagellin hook IN motif J159_02119 PF02465 Flagellar hook-associated protein 2 N-terminus J159_02119 PF07195 Flagellar hook-associated protein 2 C-terminus J159_02120 PF00700 Bacterial flagellin C-terminal helical region J159_02120 PF00669 Bacterial flagellin N-terminal helical region J159_02121 PF00700 Bacterial flagellin C-terminal helical region J159_02121 PF00669 Bacterial flagellin N-terminal helical region J159_02122 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J159_02122 PF07196 Flagellin hook IN motif J159_02123 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J159_02123 PF10135 Rod binding protein J159_02124 PF02119 Flagellar P-ring protein J159_02125 PF02107 Flagellar L-ring protein J159_02126 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J159_02126 PF00460 Flagella basal body rod protein J159_02127 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J159_02127 PF00460 Flagella basal body rod protein J159_02128 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J159_02128 PF00460 Flagella basal body rod protein J159_02128 PF07559 Flagellar basal body protein FlaE J159_02129 PF03963 Flagellar hook capping protein - N-terminal region J159_02130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J159_02130 PF00460 Flagella basal body rod protein J159_02132 PF00072 Response regulator receiver domain J159_02132 PF01584 CheW-like domain J159_02136 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_02136 PF00512 His Kinase A (phospho-acceptor) domain J159_02136 PF00989 PAS fold J159_02136 PF13188 PAS domain J159_02136 PF13426 PAS domain J159_02137 PF00990 Diguanylate cyclase, GGDEF domain J159_02137 PF03707 Bacterial signalling protein N terminal repeat J159_02137 PF00563 EAL domain J159_02138 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_02138 PF07730 Histidine kinase J159_02139 PF03707 Bacterial signalling protein N terminal repeat J159_02139 PF00563 EAL domain J159_02139 PF00990 Diguanylate cyclase, GGDEF domain J159_02141 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_02141 PF00672 HAMP domain J159_02141 PF12729 Four helix bundle sensory module for signal transduction J159_02142 PF04356 Protein of unknown function (DUF489) J159_02144 PF00293 NUDIX domain J159_02145 PF02617 ATP-dependent Clp protease adaptor protein ClpS J159_02146 PF00004 ATPase family associated with various cellular activities (AAA) J159_02146 PF10431 C-terminal, D2-small domain, of ClpB protein J159_02146 PF17871 AAA lid domain J159_02146 PF02861 Clp amino terminal domain, pathogenicity island component J159_02146 PF07724 AAA domain (Cdc48 subfamily) J159_02147 PF01176 Translation initiation factor 1A / IF-1 J159_02148 PF03588 Leucyl/phenylalanyl-tRNA protein transferase J159_02150 PF07992 Pyridine nucleotide-disulphide oxidoreductase J159_02151 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J159_02151 PF17854 FtsK alpha domain J159_02151 PF09397 Ftsk gamma domain J159_02151 PF01580 FtsK/SpoIIIE family J159_02153 PF03548 Outer membrane lipoprotein carrier protein LolA J159_02155 PF16193 AAA C-terminal domain J159_02155 PF12002 MgsA AAA+ ATPase C terminal J159_02155 PF00004 ATPase family associated with various cellular activities (AAA) J159_02157 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J159_02159 PF00108 Thiolase, N-terminal domain J159_02159 PF02803 Thiolase, C-terminal domain J159_02160 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J159_02160 PF00378 Enoyl-CoA hydratase/isomerase J159_02160 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J159_02162 PF00334 Nucleoside diphosphate kinase J159_02163 PF04055 Radical SAM superfamily J159_02165 PF13464 Domain of unknown function (DUF4115) J159_02167 PF01011 PQQ enzyme repeat J159_02167 PF13360 PQQ-like domain J159_02168 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J159_02168 PF01926 50S ribosome-binding GTPase J159_02169 PF03453 MoeA N-terminal region (domain I and II) J159_02169 PF03454 MoeA C-terminal region (domain IV) J159_02169 PF00994 Probable molybdopterin binding domain J159_02170 PF00899 ThiF family J159_02175 PF13823 Alcohol dehydrogenase GroES-associated J159_02175 PF00107 Zinc-binding dehydrogenase J159_02175 PF08240 Alcohol dehydrogenase GroES-like domain J159_02177 PF03372 Endonuclease/Exonuclease/phosphatase family J159_02179 PF03454 MoeA C-terminal region (domain IV) J159_02179 PF00994 Probable molybdopterin binding domain J159_02179 PF03453 MoeA N-terminal region (domain I and II) J159_02180 PF12804 MobA-like NTP transferase domain J159_02182 PF00561 alpha/beta hydrolase fold J159_02183 PF01566 Natural resistance-associated macrophage protein J159_02184 PF02742 Iron dependent repressor, metal binding and dimerisation domain J159_02184 PF01325 Iron dependent repressor, N-terminal DNA binding domain J159_02185 PF14437 MafB19-like deaminase J159_02186 PF00929 Exonuclease J159_02187 PF05552 Conserved TM helix J159_02187 PF00924 Mechanosensitive ion channel J159_02188 PF00391 PEP-utilising enzyme, mobile domain J159_02188 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J159_02188 PF02896 PEP-utilising enzyme, TIM barrel domain J159_02189 PF03618 Kinase/pyrophosphorylase J159_02193 PF01066 CDP-alcohol phosphatidyltransferase J159_02195 PF00561 alpha/beta hydrolase fold J159_02198 PF01266 FAD dependent oxidoreductase J159_02198 PF00355 Rieske [2Fe-2S] domain J159_02200 PF00575 S1 RNA binding domain J159_02200 PF09371 Tex-like protein N-terminal domain J159_02200 PF16921 Tex protein YqgF-like domain J159_02200 PF17674 HHH domain J159_02201 PF00512 His Kinase A (phospho-acceptor) domain J159_02201 PF00072 Response regulator receiver domain J159_02201 PF09308 LuxQ, periplasmic J159_02201 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_02209 PF00034 Cytochrome c J159_02211 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J159_02212 PF00873 AcrB/AcrD/AcrF family J159_02213 PF00873 AcrB/AcrD/AcrF family J159_02214 PF01081 KDPG and KHG aldolase J159_02215 PF00920 Dehydratase family J159_02216 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J159_02217 PF02685 Glucokinase J159_02218 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J159_02218 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J159_02219 PF00005 ABC transporter J159_02219 PF17912 MalK OB fold domain J159_02222 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J159_02223 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J159_02224 PF02910 Fumarate reductase flavoprotein C-term J159_02224 PF00890 FAD binding domain J159_02226 PF13085 2Fe-2S iron-sulfur cluster binding domain J159_02227 PF03937 Flavinator of succinate dehydrogenase J159_02229 PF02687 FtsX-like permease family J159_02229 PF12704 MacB-like periplasmic core domain J159_02230 PF00005 ABC transporter J159_02232 PF00753 Metallo-beta-lactamase superfamily J159_02232 PF03772 Competence protein J159_02233 PF01618 MotA/TolQ/ExbB proton channel family J159_02235 PF00005 ABC transporter J159_02235 PF00664 ABC transporter transmembrane region J159_02236 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J159_02237 PF02348 Cytidylyltransferase J159_02238 PF01451 Low molecular weight phosphotyrosine protein phosphatase J159_02240 PF02151 UvrB/uvrC motif J159_02240 PF01541 GIY-YIG catalytic domain J159_02240 PF08459 UvrC Helix-hairpin-helix N-terminal J159_02241 PF01066 CDP-alcohol phosphatidyltransferase J159_02245 PF13193 AMP-binding enzyme C-terminal domain J159_02245 PF00668 Condensation domain J159_02245 PF00550 Phosphopantetheine attachment site J159_02245 PF00501 AMP-binding enzyme J159_02246 PF00975 Thioesterase domain J159_02246 PF00668 Condensation domain J159_02246 PF00550 Phosphopantetheine attachment site J159_02246 PF13193 AMP-binding enzyme C-terminal domain J159_02246 PF00501 AMP-binding enzyme J159_02248 PF01527 Transposase J159_02250 PF01527 Transposase J159_02251 PF00589 Phage integrase family J159_02253 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J159_02253 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J159_02253 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J159_02255 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J159_02258 PF00196 Bacterial regulatory proteins, luxR family J159_02258 PF00072 Response regulator receiver domain J159_02259 PF00575 S1 RNA binding domain J159_02259 PF10150 Ribonuclease E/G family J159_02259 PF12111 Polyribonucleotide phosphorylase C terminal J159_02260 PF00849 RNA pseudouridylate synthase J159_02260 PF01479 S4 domain J159_02261 PF11737 Protein of unknown function (DUF3300) J159_02262 PF02535 ZIP Zinc transporter J159_02264 PF01329 Pterin 4 alpha carbinolamine dehydratase J159_02265 PF01106 NifU-like domain J159_02274 PF08241 Methyltransferase domain J159_02274 PF12697 Alpha/beta hydrolase family J159_02276 PF00106 short chain dehydrogenase J159_02280 PF00665 Integrase core domain J159_02280 PF13276 HTH-like domain J159_02280 PF13333 Integrase core domain J159_02281 PF01527 Transposase J159_02282 PF01494 FAD binding domain J159_02283 PF09335 SNARE associated Golgi protein J159_02285 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J159_02286 PF07995 Glucose / Sorbosone dehydrogenase J159_02288 PF00144 Beta-lactamase J159_02289 PF00072 Response regulator receiver domain J159_02289 PF04397 LytTr DNA-binding domain J159_02290 PF07694 5TMR of 5TMR-LYT J159_02290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_02290 PF06580 Histidine kinase J159_02292 PF00082 Subtilase family J159_02292 PF03797 Autotransporter beta-domain J159_02293 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J159_02294 PF00873 AcrB/AcrD/AcrF family J159_02296 PF13426 PAS domain J159_02296 PF08448 PAS fold J159_02296 PF00072 Response regulator receiver domain J159_02296 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_02296 PF00512 His Kinase A (phospho-acceptor) domain J159_02297 PF00072 Response regulator receiver domain J159_02297 PF00196 Bacterial regulatory proteins, luxR family J159_02298 PF12951 Passenger-associated-transport-repeat J159_02298 PF12951 Passenger-associated-transport-repeat J159_02299 PF00990 Diguanylate cyclase, GGDEF domain J159_02299 PF08448 PAS fold J159_02299 PF08447 PAS fold J159_02299 PF00563 EAL domain J159_02302 PF05974 Domain of unknown function (DUF892) J159_02304 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J159_02306 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J159_02306 PF14824 Sirohaem biosynthesis protein central J159_02306 PF10414 Sirohaem synthase dimerisation region J159_02309 PF05977 Transmembrane secretion effector J159_02310 PF07969 Amidohydrolase family J159_02312 PF00857 Isochorismatase family J159_02315 PF00072 Response regulator receiver domain J159_02315 PF00196 Bacterial regulatory proteins, luxR family J159_02318 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_02318 PF03466 LysR substrate binding domain J159_02319 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus J159_02319 PF00361 Proton-conducting membrane transporter J159_02319 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J159_02320 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) J159_02321 PF13276 HTH-like domain J159_02321 PF13333 Integrase core domain J159_02321 PF00665 Integrase core domain J159_02322 PF01527 Transposase J159_02323 PF01381 Helix-turn-helix J159_02324 PF05284 Protein of unknown function (DUF736) J159_02326 PF04002 RadC-like JAB domain J159_02331 PF13356 Arm DNA-binding domain J159_02331 PF00589 Phage integrase family J159_02334 PF00593 TonB dependent receptor J159_02334 PF07715 TonB-dependent Receptor Plug Domain J159_02338 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin J159_02343 PF00593 TonB dependent receptor J159_02343 PF07715 TonB-dependent Receptor Plug Domain J159_02346 PF10947 Protein of unknown function (DUF2628) J159_02348 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) J159_02348 PF00722 Glycosyl hydrolases family 16 J159_02353 PF00664 ABC transporter transmembrane region J159_02353 PF00005 ABC transporter J159_02353 PF03412 Peptidase C39 family J159_02355 PF13614 AAA domain J159_02363 PF01131 DNA topoisomerase J159_02363 PF01751 Toprim domain J159_02364 PF00145 C-5 cytosine-specific DNA methylase J159_02376 PF17761 DUF1016 N-terminal domain J159_02376 PF06250 YhcG PDDEXK nuclease domain J159_02377 PF01527 Transposase J159_02378 PF00665 Integrase core domain J159_02378 PF13333 Integrase core domain J159_02378 PF13276 HTH-like domain J159_02379 PF00892 EamA-like transporter family J159_02380 PF00892 EamA-like transporter family J159_02382 PF02525 Flavodoxin-like fold J159_02383 PF02798 Glutathione S-transferase, N-terminal domain J159_02383 PF00043 Glutathione S-transferase, C-terminal domain J159_02384 PF05544 Proline racemase J159_02385 PF03358 NADPH-dependent FMN reductase J159_02387 PF07690 Major Facilitator Superfamily J159_02388 PF02311 AraC-like ligand binding domain J159_02388 PF12833 Helix-turn-helix domain J159_02418 PF12462 DNA helicase IV / RNA helicase N terminal J159_02418 PF13361 UvrD-like helicase C-terminal domain J159_02418 PF00580 UvrD/REP helicase N-terminal domain J159_02433 PF03466 LysR substrate binding domain J159_02433 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_02434 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J159_02434 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J159_02435 PF03401 Tripartite tricarboxylate transporter family receptor J159_02439 PF04002 RadC-like JAB domain J159_02446 PF13356 Arm DNA-binding domain J159_02446 PF00589 Phage integrase family J159_02447 PF00117 Glutamine amidotransferase class-I J159_02447 PF00958 GMP synthase C terminal domain J159_02447 PF02540 NAD synthase J159_02448 PF00478 IMP dehydrogenase / GMP reductase domain J159_02448 PF00571 CBS domain J159_02449 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J159_02449 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J159_02451 PF00999 Sodium/hydrogen exchanger family J159_02451 PF02254 TrkA-N domain J159_02452 PF00483 Nucleotidyl transferase J159_02453 PF02719 Polysaccharide biosynthesis protein J159_02454 PF00953 Glycosyl transferase family 4 J159_02455 PF18073 Rubredoxin metal binding domain J159_02457 PF00216 Bacterial DNA-binding protein J159_02458 PF00575 S1 RNA binding domain J159_02459 PF02224 Cytidylate kinase J159_02460 PF00444 Ribosomal protein L36 J159_02463 PF04371 Porphyromonas-type peptidyl-arginine deiminase J159_02464 PF00795 Carbon-nitrogen hydrolase J159_02469 PF00528 Binding-protein-dependent transport system inner membrane component J159_02470 PF00528 Binding-protein-dependent transport system inner membrane component J159_02474 PF00356 Bacterial regulatory proteins, lacI family J159_02476 PF03795 YCII-related domain J159_02477 PF02616 Segregation and condensation protein ScpA J159_02478 PF04079 Segregation and condensation complex subunit ScpB J159_02479 PF00849 RNA pseudouridylate synthase J159_02479 PF01479 S4 domain J159_02482 PF00795 Carbon-nitrogen hydrolase J159_02483 PF00155 Aminotransferase class I and II J159_02484 PF00005 ABC transporter J159_02485 PF03379 CcmB protein J159_02486 PF01578 Cytochrome C assembly protein J159_02488 PF03100 CcmE J159_02489 PF01578 Cytochrome C assembly protein J159_02489 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J159_02490 PF08534 Redoxin J159_02491 PF03918 Cytochrome C biogenesis protein J159_02493 PF00561 alpha/beta hydrolase fold J159_02494 PF00313 'Cold-shock' DNA-binding domain J159_02495 PF00005 ABC transporter J159_02495 PF00664 ABC transporter transmembrane region J159_02496 PF00664 ABC transporter transmembrane region J159_02496 PF00005 ABC transporter J159_02497 PF01654 Cytochrome bd terminal oxidase subunit I J159_02498 PF02322 Cytochrome bd terminal oxidase subunit II J159_02502 PF02129 X-Pro dipeptidyl-peptidase (S15 family) J159_02502 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J159_02503 PF00171 Aldehyde dehydrogenase family J159_02504 PF00696 Amino acid kinase family J159_02504 PF01472 PUA domain J159_02506 PF00206 Lyase J159_02507 PF01118 Semialdehyde dehydrogenase, NAD binding domain J159_02509 PF00696 Amino acid kinase family J159_02509 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase J159_02512 PF00764 Arginosuccinate synthase J159_02513 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J159_02513 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J159_02515 PF01406 tRNA synthetases class I (C) catalytic domain J159_02515 PF09190 DALR domain J159_02516 PF02657 Fe-S metabolism associated domain J159_02518 PF01258 Prokaryotic dksA/traR C4-type zinc finger J159_02519 PF01809 Putative membrane protein insertion efficiency factor J159_02520 PF01979 Amidohydrolase family J159_02521 PF01551 Peptidase family M23 J159_02521 PF08460 Bacterial SH3 domain J159_02524 PF06751 Ethanolamine ammonia lyase large subunit (EutB) J159_02525 PF05985 Ethanolamine ammonia-lyase light chain (EutC) J159_02527 PF00753 Metallo-beta-lactamase superfamily J159_02531 PF01527 Transposase J159_02534 PF00295 Glycosyl hydrolases family 28 J159_02536 PF13419 Haloacid dehalogenase-like hydrolase J159_02538 PF01979 Amidohydrolase family J159_02540 PF09285 Elongation factor P, C-terminal J159_02540 PF01132 Elongation factor P (EF-P) OB domain J159_02540 PF08207 Elongation factor P (EF-P) KOW-like domain J159_02541 PF04055 Radical SAM superfamily J159_02542 PF00563 EAL domain J159_02542 PF00990 Diguanylate cyclase, GGDEF domain J159_02542 PF13188 PAS domain J159_02542 PF03707 Bacterial signalling protein N terminal repeat J159_02544 PF00588 SpoU rRNA Methylase family J159_02545 PF00459 Inositol monophosphatase family J159_02546 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J159_02546 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J159_02547 PF00545 ribonuclease J159_02550 PF00271 Helicase conserved C-terminal domain J159_02550 PF00270 DEAD/DEAH box helicase J159_02550 PF03880 DbpA RNA binding domain J159_02551 PF00156 Phosphoribosyl transferase domain J159_02552 PF02696 Uncharacterized ACR, YdiU/UPF0061 family J159_02553 PF00135 Carboxylesterase family J159_02554 PF02798 Glutathione S-transferase, N-terminal domain J159_02554 PF14497 Glutathione S-transferase, C-terminal domain J159_02555 PF00313 'Cold-shock' DNA-binding domain J159_02556 PF07152 YaeQ protein J159_02558 PF00072 Response regulator receiver domain J159_02558 PF00990 Diguanylate cyclase, GGDEF domain J159_02558 PF00563 EAL domain J159_02559 PF01435 Peptidase family M48 J159_02560 PF00749 tRNA synthetases class I (E and Q), catalytic domain J159_02561 PF00106 short chain dehydrogenase J159_02562 PF07879 PHB/PHA accumulation regulator DNA-binding domain J159_02562 PF05233 PHB accumulation regulatory domain J159_02565 PF01119 DNA mismatch repair protein, C-terminal domain J159_02565 PF08676 MutL C terminal dimerisation domain J159_02566 PF01520 N-acetylmuramoyl-L-alanine amidase J159_02566 PF11741 AMIN domain J159_02567 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J159_02568 PF01256 Carbohydrate kinase J159_02568 PF03853 YjeF-related protein N-terminus J159_02569 PF08331 Domain of unknown function (DUF1730) J159_02570 PF13742 OB-fold nucleic acid binding domain J159_02570 PF02601 Exonuclease VII, large subunit J159_02572 PF03781 Sulfatase-modifying factor enzyme 1 J159_02573 PF01612 3'-5' exonuclease J159_02573 PF00570 HRDC domain J159_02575 PF01068 ATP dependent DNA ligase domain J159_02575 PF13298 DNA polymerase Ligase (LigD) J159_02575 PF04679 ATP dependent DNA ligase C terminal region J159_02579 PF00589 Phage integrase family J159_02583 PF05598 Transposase domain (DUF772) J159_02585 PF01527 Transposase J159_02589 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J159_02589 PF00171 Aldehyde dehydrogenase family J159_02589 PF14850 DNA-binding domain of Proline dehydrogenase J159_02589 PF01619 Proline dehydrogenase J159_02591 PF01527 Transposase J159_02593 PF13333 Integrase core domain J159_02593 PF00665 Integrase core domain J159_02593 PF13276 HTH-like domain J159_02595 PF02796 Helix-turn-helix domain of resolvase J159_02595 PF00239 Resolvase, N terminal domain J159_02598 PF02384 N-6 DNA Methylase J159_02599 PF09572 XamI restriction endonuclease J159_02611 PF01584 CheW-like domain J159_02612 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_02612 PF12729 Four helix bundle sensory module for signal transduction J159_02612 PF00672 HAMP domain J159_02613 PF02245 Methylpurine-DNA glycosylase (MPG) J159_02614 PF08494 DEAD/H associated J159_02614 PF00271 Helicase conserved C-terminal domain J159_02614 PF00270 DEAD/DEAH box helicase J159_02617 PF04386 Stringent starvation protein B J159_02618 PF02798 Glutathione S-transferase, N-terminal domain J159_02618 PF00043 Glutathione S-transferase, C-terminal domain J159_02619 PF02167 Cytochrome C1 family J159_02620 PF00032 Cytochrome b(C-terminal)/b6/petD J159_02620 PF00033 Cytochrome b/b6/petB J159_02621 PF00355 Rieske [2Fe-2S] domain J159_02621 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal J159_02622 PF01464 Transglycosylase SLT domain J159_02625 PF01938 TRAM domain J159_02625 PF04055 Radical SAM superfamily J159_02625 PF00919 Uncharacterized protein family UPF0004 J159_02626 PF02562 PhoH-like protein J159_02628 PF02130 Uncharacterized protein family UPF0054 J159_02630 PF00571 CBS domain J159_02630 PF03471 Transporter associated domain J159_02633 PF00171 Aldehyde dehydrogenase family J159_02634 PF00528 Binding-protein-dependent transport system inner membrane component J159_02635 PF00528 Binding-protein-dependent transport system inner membrane component J159_02636 PF00005 ABC transporter J159_02636 PF08402 TOBE domain J159_02637 PF02321 Outer membrane efflux protein J159_02638 PF07690 Major Facilitator Superfamily J159_02639 PF13533 Biotin-lipoyl like J159_02640 PF13416 Bacterial extracellular solute-binding protein J159_02641 PF00202 Aminotransferase class-III J159_02642 PF00120 Glutamine synthetase, catalytic domain J159_02643 PF07722 Peptidase C26 J159_02644 PF00120 Glutamine synthetase, catalytic domain J159_02645 PF01266 FAD dependent oxidoreductase J159_02646 PF00072 Response regulator receiver domain J159_02646 PF00990 Diguanylate cyclase, GGDEF domain J159_02647 PF01814 Hemerythrin HHE cation binding domain J159_02648 PF07690 Major Facilitator Superfamily J159_02648 PF00083 Sugar (and other) transporter J159_02650 PF00384 Molybdopterin oxidoreductase J159_02651 PF02634 FdhD/NarQ family J159_02652 PF07690 Major Facilitator Superfamily J159_02653 PF00202 Aminotransferase class-III J159_02655 PF04286 Protein of unknown function (DUF445) J159_02656 PF01627 Hpt domain J159_02656 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J159_02656 PF00072 Response regulator receiver domain J159_02656 PF00512 His Kinase A (phospho-acceptor) domain J159_02656 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_02656 PF00672 HAMP domain J159_02657 PF00072 Response regulator receiver domain J159_02658 PF07690 Major Facilitator Superfamily J159_02659 PF05088 Bacterial NAD-glutamate dehydrogenase J159_02661 PF00529 HlyD membrane-fusion protein of T1SS J159_02661 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J159_02662 PF00873 AcrB/AcrD/AcrF family J159_02663 PF00356 Bacterial regulatory proteins, lacI family J159_02664 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J159_02664 PF00391 PEP-utilising enzyme, mobile domain J159_02664 PF02896 PEP-utilising enzyme, TIM barrel domain J159_02664 PF05524 PEP-utilising enzyme, N-terminal J159_02664 PF00381 PTS HPr component phosphorylation site J159_02665 PF00294 pfkB family carbohydrate kinase J159_02666 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J159_02672 PF02355 Protein export membrane protein J159_02672 PF07549 SecD/SecF GG Motif J159_02673 PF13721 SecD export protein N-terminal TM region J159_02673 PF07549 SecD/SecF GG Motif J159_02673 PF02355 Protein export membrane protein J159_02674 PF02699 Preprotein translocase subunit J159_02675 PF01702 Queuine tRNA-ribosyltransferase J159_02676 PF02547 Queuosine biosynthesis protein J159_02685 PF02927 Cellulase N-terminal ig-like domain J159_02685 PF00759 Glycosyl hydrolase family 9 J159_02687 PF00037 4Fe-4S binding domain J159_02690 PF01467 Cytidylyltransferase-like J159_02692 PF00183 Hsp90 protein J159_02692 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_02696 PF00593 TonB dependent receptor J159_02696 PF07715 TonB-dependent Receptor Plug Domain J159_02697 PF04616 Glycosyl hydrolases family 43 J159_02698 PF07532 Bacterial Ig-like domain (group 4) J159_02699 PF00593 TonB dependent receptor J159_02699 PF07715 TonB-dependent Receptor Plug Domain J159_02701 PF00082 Subtilase family J159_02701 PF09286 Pro-kumamolisin, activation domain J159_02707 PF13520 Amino acid permease J159_02710 PF00557 Metallopeptidase family M24 J159_02710 PF01321 Creatinase/Prolidase N-terminal domain J159_02711 PF00171 Aldehyde dehydrogenase family J159_02712 PF00701 Dihydrodipicolinate synthetase family J159_02713 PF07992 Pyridine nucleotide-disulphide oxidoreductase J159_02713 PF04324 BFD-like [2Fe-2S] binding domain J159_02715 PF01266 FAD dependent oxidoreductase J159_02716 PF05544 Proline racemase J159_02718 PF02881 SRP54-type protein, helical bundle domain J159_02718 PF00448 SRP54-type protein, GTPase domain J159_02719 PF00730 HhH-GPD superfamily base excision DNA repair protein J159_02719 PF14815 NUDIX domain J159_02719 PF00633 Helix-hairpin-helix motif J159_02719 PF10576 Iron-sulfur binding domain of endonuclease III J159_02720 PF04362 Bacterial Fe(2+) trafficking J159_02721 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_02721 PF13426 PAS domain J159_02721 PF00072 Response regulator receiver domain J159_02727 PF08212 Lipocalin-like domain J159_02729 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J159_02729 PF02770 Acyl-CoA dehydrogenase, middle domain J159_02729 PF12806 Acetyl-CoA dehydrogenase C-terminal like J159_02729 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J159_02731 PF02780 Transketolase, C-terminal domain J159_02731 PF02779 Transketolase, pyrimidine binding domain J159_02731 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J159_02735 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family J159_02736 PF00753 Metallo-beta-lactamase superfamily J159_02736 PF16123 Hydroxyacylglutathione hydrolase C-terminus J159_02737 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J159_02737 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J159_02740 PF03808 Glycosyl transferase WecB/TagA/CpsF family J159_02743 PF14667 Polysaccharide biosynthesis C-terminal domain J159_02745 PF00534 Glycosyl transferases group 1 J159_02745 PF13439 Glycosyltransferase Family 4 J159_02749 PF02397 Bacterial sugar transferase J159_02753 PF13411 MerR HTH family regulatory protein J159_02754 PF00216 Bacterial DNA-binding protein J159_02755 PF01588 Putative tRNA binding domain J159_02755 PF03483 B3/4 domain J159_02755 PF03484 tRNA synthetase B5 domain J159_02755 PF03147 Ferredoxin-fold anticodon binding domain J159_02755 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J159_02756 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J159_02756 PF01409 tRNA synthetases class II core domain (F) J159_02757 PF00453 Ribosomal protein L20 J159_02758 PF01632 Ribosomal protein L35 J159_02760 PF05198 Translation initiation factor IF-3, N-terminal domain J159_02760 PF00707 Translation initiation factor IF-3, C-terminal domain J159_02761 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J159_02761 PF03129 Anticodon binding domain J159_02761 PF02824 TGS domain J159_02761 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J159_02762 PF00356 Bacterial regulatory proteins, lacI family J159_02763 PF00686 Starch binding domain J159_02763 PF00128 Alpha amylase, catalytic domain J159_02764 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J159_02766 PF14508 Glycosyl-hydrolase 97 N-terminal J159_02766 PF10566 Glycoside hydrolase 97 J159_02766 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation J159_02770 PF00128 Alpha amylase, catalytic domain J159_02772 PF01527 Transposase J159_02781 PF03135 CagE, TrbE, VirB family, component of type IV transporter system J159_02782 PF05101 Type IV secretory pathway, VirB3-like protein J159_02784 PF01464 Transglycosylase SLT domain J159_02785 PF00437 Type II/IV secretion system protein J159_02786 PF03743 Bacterial conjugation TrbI-like protein J159_02790 PF02534 Type IV secretory system Conjugative DNA transfer J159_02793 PF12344 Ultra-violet resistance protein B J159_02793 PF00271 Helicase conserved C-terminal domain J159_02793 PF04851 Type III restriction enzyme, res subunit J159_02793 PF02151 UvrB/uvrC motif J159_02793 PF17757 UvrB interaction domain J159_02801 PF01527 Transposase J159_02802 PF13333 Integrase core domain J159_02802 PF13276 HTH-like domain J159_02802 PF00665 Integrase core domain J159_02808 PF01555 DNA methylase J159_02818 PF00182 Chitinase class I J159_02828 PF13333 Integrase core domain J159_02828 PF13276 HTH-like domain J159_02828 PF00665 Integrase core domain J159_02829 PF01527 Transposase J159_02830 PF00114 Pilin (bacterial filament) J159_02830 PF07963 Prokaryotic N-terminal methylation motif J159_02831 PF05567 Neisseria PilC beta-propeller domain J159_02834 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_02834 PF06580 Histidine kinase J159_02834 PF07694 5TMR of 5TMR-LYT J159_02835 PF03641 Possible lysine decarboxylase J159_02835 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases J159_02835 PF11892 Domain of unknown function (DUF3412) J159_02836 PF00593 TonB dependent receptor J159_02837 PF01914 MarC family integral membrane protein J159_02839 PF00462 Glutaredoxin J159_02840 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J159_02840 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J159_02841 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J159_02841 PF02222 ATP-grasp domain J159_02842 PF00731 AIR carboxylase J159_02844 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain J159_02844 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain J159_02846 PF00575 S1 RNA binding domain J159_02846 PF01138 3' exoribonuclease family, domain 1 J159_02846 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J159_02846 PF00013 KH domain J159_02846 PF03725 3' exoribonuclease family, domain 2 J159_02847 PF00312 Ribosomal protein S15 J159_02848 PF16198 tRNA pseudouridylate synthase B C-terminal domain J159_02848 PF01509 TruB family pseudouridylate synthase (N terminal domain) J159_02848 PF09157 Pseudouridine synthase II TruB, C-terminal J159_02849 PF02033 Ribosome-binding factor A J159_02850 PF04760 Translation initiation factor IF-2, N-terminal region J159_02850 PF00009 Elongation factor Tu GTP binding domain J159_02850 PF08364 Bacterial translation initiation factor IF-2 associated region J159_02850 PF11987 Translation-initiation factor 2 J159_02851 PF08529 NusA N-terminal domain J159_02851 PF00575 S1 RNA binding domain J159_02851 PF13184 NusA-like KH domain J159_02852 PF02576 RimP N-terminal domain J159_02852 PF17384 RimP C-terminal SH3 domain J159_02854 PF00361 Proton-conducting membrane transporter J159_02855 PF00361 Proton-conducting membrane transporter J159_02855 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus J159_02856 PF00361 Proton-conducting membrane transporter J159_02856 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J159_02857 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J159_02858 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 J159_02859 PF12838 4Fe-4S dicluster domain J159_02860 PF00146 NADH dehydrogenase J159_02861 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal J159_02861 PF00384 Molybdopterin oxidoreductase J159_02861 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J159_02862 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J159_02862 PF10531 SLBB domain J159_02862 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J159_02864 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit J159_02865 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit J159_02866 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit J159_02867 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 J159_02870 PF00121 Triosephosphate isomerase J159_02871 PF00106 short chain dehydrogenase J159_02874 PF03707 Bacterial signalling protein N terminal repeat J159_02874 PF00990 Diguanylate cyclase, GGDEF domain J159_02874 PF00563 EAL domain J159_02877 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J159_02877 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J159_02877 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J159_02877 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J159_02878 PF17848 Acetyl-coA carboxylase zinc finger domain J159_02878 PF01039 Carboxyl transferase domain J159_02879 PF00290 Tryptophan synthase alpha chain J159_02881 PF00291 Pyridoxal-phosphate dependent enzyme J159_02882 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_02882 PF03466 LysR substrate binding domain J159_02883 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase J159_02884 PF01416 tRNA pseudouridine synthase J159_02888 PF02774 Semialdehyde dehydrogenase, dimerisation domain J159_02888 PF01118 Semialdehyde dehydrogenase, NAD binding domain J159_02889 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J159_02889 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J159_02890 PF01264 Chorismate synthase J159_02891 PF05175 Methyltransferase small domain J159_02892 PF02630 SCO1/SenC J159_02893 PF02666 Phosphatidylserine decarboxylase J159_02895 PF05872 Bacterial protein of unknown function (DUF853) J159_02896 PF00293 NUDIX domain J159_02899 PF03449 Transcription elongation factor, N-terminal J159_02899 PF01272 Transcription elongation factor, GreA/GreB, C-term J159_02900 PF04055 Radical SAM superfamily J159_02900 PF18693 TRAM domain J159_02900 PF00919 Uncharacterized protein family UPF0004 J159_02901 PF01738 Dienelactone hydrolase family J159_02905 PF00692 dUTPase J159_02906 PF10609 NUBPL iron-transfer P-loop NTPase J159_02907 PF00593 TonB dependent receptor J159_02907 PF07715 TonB-dependent Receptor Plug Domain J159_02910 PF05649 Peptidase family M13 J159_02910 PF01431 Peptidase family M13 J159_02911 PF05649 Peptidase family M13 J159_02911 PF01431 Peptidase family M13 J159_02914 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J159_02915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J159_02915 PF07992 Pyridine nucleotide-disulphide oxidoreductase J159_02916 PF01266 FAD dependent oxidoreductase J159_02917 PF04235 Protein of unknown function (DUF418) J159_02918 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J159_02919 PF00877 NlpC/P60 family J159_02920 PF00877 NlpC/P60 family J159_02923 PF00375 Sodium:dicarboxylate symporter family J159_02924 PF00245 Alkaline phosphatase J159_02925 PF01171 PP-loop family J159_02925 PF09179 TilS substrate binding domain J159_02925 PF11734 TilS substrate C-terminal domain J159_02926 PF02609 Exonuclease VII small subunit J159_02927 PF00348 Polyprenyl synthetase J159_02928 PF14521 Lysine-specific metallo-endopeptidase J159_02930 PF01523 Putative modulator of DNA gyrase J159_02931 PF04751 Protein of unknown function (DUF615) J159_02932 PF01523 Putative modulator of DNA gyrase J159_02934 PF13116 Protein of unknown function J159_02934 PF13502 AsmA-like C-terminal region J159_02935 PF00575 S1 RNA binding domain J159_02935 PF10150 Ribonuclease E/G family J159_02936 PF02545 Maf-like protein J159_02937 PF04402 Protein of unknown function (DUF541) J159_02940 PF02590 Predicted SPOUT methyltransferase J159_02943 PF01467 Cytidylyltransferase-like J159_02946 PF13603 Leucyl-tRNA synthetase, Domain 2 J159_02946 PF08264 Anticodon-binding domain of tRNA J159_02946 PF00133 tRNA synthetases class I (I, L, M and V) J159_02948 PF00085 Thioredoxin J159_02953 PF04070 Domain of unknown function (DUF378) J159_02954 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J159_02956 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_02956 PF03466 LysR substrate binding domain J159_02961 PF00664 ABC transporter transmembrane region J159_02961 PF00005 ABC transporter J159_02964 PF00873 AcrB/AcrD/AcrF family J159_02967 PF02321 Outer membrane efflux protein J159_02968 PF00072 Response regulator receiver domain J159_02968 PF00486 Transcriptional regulatory protein, C terminal J159_02969 PF00512 His Kinase A (phospho-acceptor) domain J159_02969 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_02969 PF00672 HAMP domain J159_02970 PF00999 Sodium/hydrogen exchanger family J159_02971 PF00144 Beta-lactamase J159_02972 PF03737 Aldolase/RraA J159_02975 PF00990 Diguanylate cyclase, GGDEF domain J159_02975 PF00072 Response regulator receiver domain J159_02976 PF01479 S4 domain J159_02976 PF00849 RNA pseudouridylate synthase J159_02977 PF08448 PAS fold J159_02977 PF00563 EAL domain J159_02977 PF00990 Diguanylate cyclase, GGDEF domain J159_02978 PF00271 Helicase conserved C-terminal domain J159_02978 PF00270 DEAD/DEAH box helicase J159_02978 PF03880 DbpA RNA binding domain J159_02987 PF00730 HhH-GPD superfamily base excision DNA repair protein J159_02987 PF06029 AlkA N-terminal domain J159_02988 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J159_02988 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J159_02990 PF00654 Voltage gated chloride channel J159_02991 PF00107 Zinc-binding dehydrogenase J159_02991 PF08240 Alcohol dehydrogenase GroES-like domain J159_02994 PF07715 TonB-dependent Receptor Plug Domain J159_02994 PF00593 TonB dependent receptor J159_02996 PF00082 Subtilase family J159_02996 PF01483 Proprotein convertase P-domain J159_02999 PF00082 Subtilase family J159_02999 PF01483 Proprotein convertase P-domain J159_03001 PF00248 Aldo/keto reductase family J159_03002 PF07690 Major Facilitator Superfamily J159_03003 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_03003 PF03466 LysR substrate binding domain J159_03005 PF12833 Helix-turn-helix domain J159_03005 PF06719 AraC-type transcriptional regulator N-terminus J159_03007 PF16859 Tetracyclin repressor-like, C-terminal domain J159_03007 PF00440 Bacterial regulatory proteins, tetR family J159_03008 PF02321 Outer membrane efflux protein J159_03009 PF00873 AcrB/AcrD/AcrF family J159_03010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J159_03010 PF00529 HlyD membrane-fusion protein of T1SS J159_03012 PF01475 Ferric uptake regulator family J159_03013 PF00749 tRNA synthetases class I (E and Q), catalytic domain J159_03018 PF06123 Inner membrane protein CreD J159_03020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_03020 PF00672 HAMP domain J159_03020 PF00512 His Kinase A (phospho-acceptor) domain J159_03021 PF00486 Transcriptional regulatory protein, C terminal J159_03021 PF00072 Response regulator receiver domain J159_03022 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ J159_03024 PF17757 UvrB interaction domain J159_03024 PF02559 CarD-like/TRCF domain J159_03024 PF00270 DEAD/DEAH box helicase J159_03024 PF00271 Helicase conserved C-terminal domain J159_03024 PF03461 TRCF domain J159_03031 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_03031 PF01627 Hpt domain J159_03031 PF01584 CheW-like domain J159_03031 PF02895 Signal transducing histidine kinase, homodimeric domain J159_03031 PF09078 CheY binding J159_03032 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_03032 PF02203 Tar ligand binding domain homologue J159_03032 PF00672 HAMP domain J159_03033 PF01584 CheW-like domain J159_03034 PF13426 PAS domain J159_03034 PF00990 Diguanylate cyclase, GGDEF domain J159_03034 PF00563 EAL domain J159_03035 PF01739 CheR methyltransferase, SAM binding domain J159_03035 PF03705 CheR methyltransferase, all-alpha domain J159_03036 PF01339 CheB methylesterase J159_03036 PF00072 Response regulator receiver domain J159_03037 PF13091 PLD-like domain J159_03038 PF05649 Peptidase family M13 J159_03038 PF01431 Peptidase family M13 J159_03040 PF00300 Histidine phosphatase superfamily (branch 1) J159_03041 PF04493 Endonuclease V J159_03043 PF05726 Pirin C-terminal cupin domain J159_03043 PF02678 Pirin J159_03046 PF02678 Pirin J159_03046 PF05726 Pirin C-terminal cupin domain J159_03047 PF13722 5TM C-terminal transporter carbon starvation CstA J159_03047 PF02554 Carbon starvation protein CstA J159_03048 PF04328 Selenoprotein, putative J159_03057 PF01527 Transposase J159_03059 PF13478 XdhC Rossmann domain J159_03059 PF02625 XdhC and CoxI family J159_03060 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J159_03060 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J159_03061 PF03450 CO dehydrogenase flavoprotein C-terminal domain J159_03061 PF00941 FAD binding domain in molybdopterin dehydrogenase J159_03062 PF00111 2Fe-2S iron-sulfur cluster binding domain J159_03062 PF01799 [2Fe-2S] binding domain J159_03062 PF10518 TAT (twin-arginine translocation) pathway signal sequence J159_03063 PF08990 Erythronolide synthase docking J159_03063 PF08240 Alcohol dehydrogenase GroES-like domain J159_03063 PF09277 Erythronolide synthase, docking J159_03063 PF00698 Acyl transferase domain J159_03063 PF14765 Polyketide synthase dehydratase J159_03063 PF16197 Ketoacyl-synthetase C-terminal extension J159_03063 PF02801 Beta-ketoacyl synthase, C-terminal domain J159_03063 PF08659 KR domain J159_03063 PF00109 Beta-ketoacyl synthase, N-terminal domain J159_03063 PF00550 Phosphopantetheine attachment site J159_03064 PF00563 EAL domain J159_03064 PF01590 GAF domain J159_03064 PF00990 Diguanylate cyclase, GGDEF domain J159_03064 PF00360 Phytochrome region J159_03065 PF00436 Single-strand binding protein family J159_03066 PF00348 Polyprenyl synthetase J159_03068 PF02875 Mur ligase family, glutamate ligase domain J159_03068 PF08245 Mur ligase middle domain J159_03071 PF00696 Amino acid kinase family J159_03071 PF01842 ACT domain J159_03072 PF02567 Phenazine biosynthesis-like protein J159_03073 PF02567 Phenazine biosynthesis-like protein J159_03075 PF02566 OsmC-like protein J159_03076 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J159_03076 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J159_03077 PF03652 Holliday junction resolvase J159_03078 PF02622 Uncharacterized ACR, COG1678 J159_03079 PF00958 GMP synthase C terminal domain J159_03079 PF00117 Glutamine amidotransferase class-I J159_03079 PF03352 Methyladenine glycosylase J159_03079 PF13302 Acetyltransferase (GNAT) domain J159_03079 PF13673 Acetyltransferase (GNAT) domain J159_03082 PF03211 Pectate lyase J159_03083 PF00437 Type II/IV secretion system protein J159_03084 PF00437 Type II/IV secretion system protein J159_03085 PF01168 Alanine racemase, N-terminal domain J159_03086 PF14748 Pyrroline-5-carboxylate reductase dimerisation J159_03086 PF03807 NADP oxidoreductase coenzyme F420-dependent J159_03088 PF01551 Peptidase family M23 J159_03092 PF01965 DJ-1/PfpI family J159_03094 PF02082 Transcriptional regulator J159_03095 PF01458 Uncharacterized protein family (UPF0051) J159_03096 PF00005 ABC transporter J159_03097 PF01458 Uncharacterized protein family (UPF0051) J159_03098 PF00266 Aminotransferase class-V J159_03100 PF00355 Rieske [2Fe-2S] domain J159_03101 PF00593 TonB dependent receptor J159_03101 PF07715 TonB-dependent Receptor Plug Domain J159_03102 PF18331 PKHD-type hydroxylase C-terminal domain J159_03102 PF13640 2OG-Fe(II) oxygenase superfamily J159_03107 PF02424 ApbE family J159_03108 PF00667 FAD binding domain J159_03108 PF00258 Flavodoxin J159_03108 PF00175 Oxidoreductase NAD-binding domain J159_03112 PF07687 Peptidase dimerisation domain J159_03112 PF01546 Peptidase family M20/M25/M40 J159_03114 PF01636 Phosphotransferase enzyme family J159_03115 PF00483 Nucleotidyl transferase J159_03116 PF00308 Bacterial dnaA protein J159_03117 PF01594 AI-2E family transporter J159_03119 PF02769 AIR synthase related protein, C-terminal domain J159_03119 PF00586 AIR synthase related protein, N-terminal domain J159_03121 PF00551 Formyl transferase J159_03125 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J159_03126 PF01722 BolA-like protein J159_03127 PF01380 SIS domain J159_03127 PF00571 CBS domain J159_03130 PF03968 OstA-like protein J159_03131 PF00005 ABC transporter J159_03132 PF04552 Sigma-54, DNA binding domain J159_03132 PF04963 Sigma-54 factor, core binding domain J159_03132 PF00309 Sigma-54 factor, Activator interacting domain (AID) J159_03133 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J159_03134 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J159_03135 PF07475 HPr Serine kinase C-terminal domain J159_03135 PF02603 HPr Serine kinase N terminus J159_03136 PF03668 P-loop ATPase protein family J159_03138 PF00381 PTS HPr component phosphorylation site J159_03139 PF05524 PEP-utilising enzyme, N-terminal J159_03139 PF00391 PEP-utilising enzyme, mobile domain J159_03139 PF02896 PEP-utilising enzyme, TIM barrel domain J159_03140 PF03448 MgtE intracellular N domain J159_03140 PF00571 CBS domain J159_03140 PF01769 Divalent cation transporter J159_03141 PF00756 Putative esterase J159_03142 PF02322 Cytochrome bd terminal oxidase subunit II J159_03143 PF01654 Cytochrome bd terminal oxidase subunit I J159_03145 PF00324 Amino acid permease J159_03146 PF00544 Pectate lyase J159_03147 PF00561 alpha/beta hydrolase fold J159_03148 PF00196 Bacterial regulatory proteins, luxR family J159_03149 PF00324 Amino acid permease J159_03154 PF12706 Beta-lactamase superfamily domain J159_03155 PF04820 Tryptophan halogenase J159_03160 PF00376 MerR family regulatory protein J159_03160 PF09278 MerR, DNA binding J159_03161 PF07690 Major Facilitator Superfamily J159_03163 PF03738 Glutathionylspermidine synthase preATP-grasp J159_03168 PF04012 PspA/IM30 family J159_03170 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J159_03170 PF01243 Pyridoxamine 5'-phosphate oxidase J159_03171 PF01202 Shikimate kinase J159_03172 PF01761 3-dehydroquinate synthase J159_03174 PF01208 Uroporphyrinogen decarboxylase (URO-D) J159_03187 PF02954 Bacterial regulatory protein, Fis family J159_03187 PF00158 Sigma-54 interaction domain J159_03187 PF01590 GAF domain J159_03188 PF07690 Major Facilitator Superfamily J159_03189 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_03189 PF00672 HAMP domain J159_03189 PF17149 Periplasmic sensor domain found in signal transduction proteins J159_03189 PF00072 Response regulator receiver domain J159_03189 PF01627 Hpt domain J159_03189 PF00512 His Kinase A (phospho-acceptor) domain J159_03190 PF00512 His Kinase A (phospho-acceptor) domain J159_03190 PF01627 Hpt domain J159_03190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_03190 PF00672 HAMP domain J159_03190 PF17149 Periplasmic sensor domain found in signal transduction proteins J159_03190 PF00072 Response regulator receiver domain J159_03192 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_03192 PF00072 Response regulator receiver domain J159_03192 PF01627 Hpt domain J159_03192 PF00512 His Kinase A (phospho-acceptor) domain J159_03193 PF04264 YceI-like domain J159_03197 PF03315 Serine dehydratase beta chain J159_03197 PF03313 Serine dehydratase alpha chain J159_03198 PF12697 Alpha/beta hydrolase family J159_03199 PF03447 Homoserine dehydrogenase, NAD binding domain J159_03199 PF00742 Homoserine dehydrogenase J159_03199 PF00696 Amino acid kinase family J159_03200 PF01053 Cys/Met metabolism PLP-dependent enzyme J159_03201 PF00561 alpha/beta hydrolase fold J159_03203 PF01476 LysM domain J159_03203 PF08525 Opacity-associated protein A N-terminal motif J159_03203 PF01551 Peptidase family M23 J159_03204 PF00009 Elongation factor Tu GTP binding domain J159_03204 PF16658 Class II release factor RF3, C-terminal domain J159_03205 PF03006 Haemolysin-III related J159_03206 PF05170 AsmA family J159_03207 PF00571 CBS domain J159_03207 PF00478 IMP dehydrogenase / GMP reductase domain J159_03208 PF00535 Glycosyl transferase family 2 J159_03209 PF00912 Transglycosylase J159_03210 PF01430 Hsp33 protein J159_03212 PF00593 TonB dependent receptor J159_03212 PF07715 TonB-dependent Receptor Plug Domain J159_03214 PF00440 Bacterial regulatory proteins, tetR family J159_03215 PF00561 alpha/beta hydrolase fold J159_03216 PF09317 Domain of unknown function (DUF1974) J159_03216 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J159_03216 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J159_03221 PF01597 Glycine cleavage H-protein J159_03222 PF08669 Glycine cleavage T-protein C-terminal barrel domain J159_03222 PF01571 Aminomethyltransferase folate-binding domain J159_03224 PF16200 C-terminal region of band_7 J159_03224 PF01145 SPFH domain / Band 7 family J159_03225 PF02694 Uncharacterised BCR, YnfA/UPF0060 family J159_03226 PF03819 MazG nucleotide pyrophosphohydrolase domain J159_03227 PF00459 Inositol monophosphatase family J159_03228 PF00293 NUDIX domain J159_03229 PF00202 Aminotransferase class-III J159_03230 PF04452 RNA methyltransferase J159_03231 PF02685 Glucokinase J159_03234 PF00704 Glycosyl hydrolases family 18 J159_03234 PF01476 LysM domain J159_03235 PF02838 Glycosyl hydrolase family 20, domain 2 J159_03235 PF00728 Glycosyl hydrolase family 20, catalytic domain J159_03235 PF07691 PA14 domain J159_03237 PF14310 Fibronectin type III-like domain J159_03237 PF07691 PA14 domain J159_03237 PF00933 Glycosyl hydrolase family 3 N terminal domain J159_03237 PF01915 Glycosyl hydrolase family 3 C-terminal domain J159_03239 PF01301 Glycosyl hydrolases family 35 J159_03240 PF13520 Amino acid permease J159_03242 PF02056 Family 4 glycosyl hydrolase J159_03242 PF11975 Family 4 glycosyl hydrolase C-terminal domain J159_03244 PF07971 Glycosyl hydrolase family 92 J159_03244 PF17678 Glycosyl hydrolase family 92 N-terminal domain J159_03245 PF01301 Glycosyl hydrolases family 35 J159_03251 PF03932 CutC family J159_03252 PF01112 Asparaginase J159_03253 PF13302 Acetyltransferase (GNAT) domain J159_03256 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_03256 PF01627 Hpt domain J159_03256 PF01584 CheW-like domain J159_03256 PF00072 Response regulator receiver domain J159_03257 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_03257 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J159_03259 PF00072 Response regulator receiver domain J159_03260 PF00072 Response regulator receiver domain J159_03261 PF02951 Prokaryotic glutathione synthetase, N-terminal domain J159_03261 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain J159_03263 PF03747 ADP-ribosylglycohydrolase J159_03264 PF00814 Glycoprotease family J159_03265 PF13307 Helicase C-terminal domain J159_03265 PF04851 Type III restriction enzyme, res subunit J159_03267 PF14814 Bifunctional transglycosylase second domain J159_03267 PF00912 Transglycosylase J159_03267 PF00905 Penicillin binding protein transpeptidase domain J159_03268 PF00535 Glycosyl transferase family 2 J159_03270 PF13291 ACT domain J159_03270 PF04607 Region found in RelA / SpoT proteins J159_03270 PF02824 TGS domain J159_03271 PF12706 Beta-lactamase superfamily domain J159_03272 PF03070 TENA/THI-4/PQQC family J159_03273 PF05402 Coenzyme PQQ synthesis protein D (PqqD) J159_03274 PF13186 Iron-sulfur cluster-binding domain J159_03274 PF04055 Radical SAM superfamily J159_03277 PF02685 Glucokinase J159_03279 PF00270 DEAD/DEAH box helicase J159_03279 PF04408 Helicase associated domain (HA2) J159_03279 PF00271 Helicase conserved C-terminal domain J159_03279 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J159_03279 PF11898 Domain of unknown function (DUF3418) J159_03280 PF00210 Ferritin-like domain J159_03281 PF16124 RecQ zinc-binding J159_03281 PF00270 DEAD/DEAH box helicase J159_03281 PF00271 Helicase conserved C-terminal domain J159_03281 PF00570 HRDC domain J159_03281 PF09382 RQC domain J159_03288 PF00672 HAMP domain J159_03288 PF02203 Tar ligand binding domain homologue J159_03288 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_03292 PF07536 HWE histidine kinase J159_03292 PF13426 PAS domain J159_03292 PF13581 Histidine kinase-like ATPase domain J159_03293 PF06508 Queuosine biosynthesis protein QueC J159_03295 PF04055 Radical SAM superfamily J159_03297 PF00691 OmpA family J159_03298 PF07676 WD40-like Beta Propeller Repeat J159_03298 PF04052 TolB amino-terminal domain J159_03300 PF02472 Biopolymer transport protein ExbD/TolR J159_03301 PF01618 MotA/TolQ/ExbB proton channel family J159_03302 PF03061 Thioesterase superfamily J159_03303 PF05491 RuvB C-terminal winged helix domain J159_03303 PF05496 Holliday junction DNA helicase RuvB P-loop domain J159_03303 PF17864 RuvB AAA lid domain J159_03305 PF02705 K+ potassium transporter J159_03306 PF01330 RuvA N terminal domain J159_03306 PF07499 RuvA, C-terminal domain J159_03307 PF02075 Crossover junction endodeoxyribonuclease RuvC J159_03308 PF01709 Transcriptional regulator J159_03311 PF00152 tRNA synthetases class II (D, K and N) J159_03311 PF01336 OB-fold nucleic acid binding domain J159_03311 PF02938 GAD domain J159_03314 PF07690 Major Facilitator Superfamily J159_03317 PF05506 Domain of unknown function (DUF756) J159_03317 PF04185 Phosphoesterase family J159_03320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_03320 PF03466 LysR substrate binding domain J159_03322 PF12848 ABC transporter J159_03322 PF00005 ABC transporter J159_03323 PF00593 TonB dependent receptor J159_03323 PF07715 TonB-dependent Receptor Plug Domain J159_03325 PF00593 TonB dependent receptor J159_03325 PF07715 TonB-dependent Receptor Plug Domain J159_03326 PF00593 TonB dependent receptor J159_03326 PF07715 TonB-dependent Receptor Plug Domain J159_03327 PF00067 Cytochrome P450 J159_03328 PF00999 Sodium/hydrogen exchanger family J159_03328 PF02254 TrkA-N domain J159_03333 PF07660 Secretin and TonB N terminus short domain J159_03333 PF07715 TonB-dependent Receptor Plug Domain J159_03333 PF00593 TonB dependent receptor J159_03335 PF06276 Ferric iron reductase FhuF-like transporter J159_03335 PF04183 IucA / IucC family J159_03336 PF07690 Major Facilitator Superfamily J159_03338 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J159_03338 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J159_03341 PF02654 Cobalamin-5-phosphate synthase J159_03343 PF02277 Phosphoribosyltransferase J159_03344 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase J159_03345 PF07685 CobB/CobQ-like glutamine amidotransferase domain J159_03345 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J159_03346 PF00155 Aminotransferase class I and II J159_03348 PF03186 CobD/Cbib protein J159_03348 PF17113 Regulatory signalling modulator protein AmpE J159_03349 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP J159_03349 PF12557 Cob(I)alamin adenosyltransferase N terminal J159_03352 PF07715 TonB-dependent Receptor Plug Domain J159_03352 PF00593 TonB dependent receptor J159_03354 PF02861 Clp amino terminal domain, pathogenicity island component J159_03354 PF07724 AAA domain (Cdc48 subfamily) J159_03354 PF00004 ATPase family associated with various cellular activities (AAA) J159_03354 PF17871 AAA lid domain J159_03354 PF10431 C-terminal, D2-small domain, of ClpB protein J159_03355 PF00005 ABC transporter J159_03356 PF00528 Binding-protein-dependent transport system inner membrane component J159_03357 PF09084 NMT1/THI5 like J159_03358 PF00248 Aldo/keto reductase family J159_03360 PF07715 TonB-dependent Receptor Plug Domain J159_03360 PF00593 TonB dependent receptor J159_03361 PF01541 GIY-YIG catalytic domain J159_03368 PF00593 TonB dependent receptor J159_03368 PF07715 TonB-dependent Receptor Plug Domain J159_03369 PF02358 Trehalose-phosphatase J159_03370 PF00723 Glycosyl hydrolases family 15 J159_03371 PF00982 Glycosyltransferase family 20 J159_03372 PF01011 PQQ enzyme repeat J159_03373 PF02203 Tar ligand binding domain homologue J159_03373 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_03373 PF00672 HAMP domain J159_03374 PF04134 Protein of unknown function, DUF393 J159_03377 PF00849 RNA pseudouridylate synthase J159_03378 PF13525 Outer membrane lipoprotein J159_03380 PF02540 NAD synthase J159_03380 PF00795 Carbon-nitrogen hydrolase J159_03382 PF01527 Transposase J159_03383 PF13276 HTH-like domain J159_03383 PF13333 Integrase core domain J159_03383 PF00665 Integrase core domain J159_03386 PF13406 Transglycosylase SLT domain J159_03387 PF01526 Tn3 transposase DDE domain J159_03387 PF13700 Domain of unknown function (DUF4158) J159_03391 PF01129 NAD:arginine ADP-ribosyltransferase J159_03396 PF00549 CoA-ligase J159_03396 PF02629 CoA binding domain J159_03397 PF08442 ATP-grasp domain J159_03397 PF00549 CoA-ligase J159_03398 PF00512 His Kinase A (phospho-acceptor) domain J159_03398 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_03399 PF02954 Bacterial regulatory protein, Fis family J159_03399 PF00072 Response regulator receiver domain J159_03399 PF00158 Sigma-54 interaction domain J159_03401 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J159_03401 PF00437 Type II/IV secretion system protein J159_03402 PF00437 Type II/IV secretion system protein J159_03402 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J159_03403 PF00437 Type II/IV secretion system protein J159_03403 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J159_03404 PF00114 Pilin (bacterial filament) J159_03404 PF07963 Prokaryotic N-terminal methylation motif J159_03405 PF07963 Prokaryotic N-terminal methylation motif J159_03405 PF00114 Pilin (bacterial filament) J159_03406 PF00482 Type II secretion system (T2SS), protein F J159_03407 PF01478 Type IV leader peptidase family J159_03407 PF06750 Bacterial Peptidase A24 N-terminal domain J159_03408 PF01121 Dephospho-CoA kinase J159_03411 PF01527 Transposase J159_03412 PF13333 Integrase core domain J159_03412 PF00665 Integrase core domain J159_03412 PF13276 HTH-like domain J159_03413 PF16736 Single Cache-like J159_03413 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_03413 PF00512 His Kinase A (phospho-acceptor) domain J159_03413 PF00989 PAS fold J159_03414 PF00072 Response regulator receiver domain J159_03414 PF00486 Transcriptional regulatory protein, C terminal J159_03416 PF18030 RimK PreATP-grasp domain J159_03416 PF08443 RimK-like ATP-grasp domain J159_03417 PF00128 Alpha amylase, catalytic domain J159_03417 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J159_03430 PF04002 RadC-like JAB domain J159_03435 PF00072 Response regulator receiver domain J159_03435 PF13426 PAS domain J159_03435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_03436 PF13426 PAS domain J159_03436 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_03436 PF00072 Response regulator receiver domain J159_03442 PF01527 Transposase J159_03451 PF00512 His Kinase A (phospho-acceptor) domain J159_03451 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_03451 PF08448 PAS fold J159_03451 PF13188 PAS domain J159_03451 PF00072 Response regulator receiver domain J159_03455 PF13676 TIR domain J159_03459 PF00657 GDSL-like Lipase/Acylhydrolase J159_03459 PF03797 Autotransporter beta-domain J159_03461 PF05690 Thiazole biosynthesis protein ThiG J159_03462 PF02390 Putative methyltransferase J159_03463 PF03600 Citrate transporter J159_03463 PF02080 TrkA-C domain J159_03466 PF01557 Fumarylacetoacetate (FAA) hydrolase family J159_03467 PF01741 Large-conductance mechanosensitive channel, MscL J159_03469 PF00356 Bacterial regulatory proteins, lacI family J159_03471 PF02837 Glycosyl hydrolases family 2, sugar binding domain J159_03471 PF00703 Glycosyl hydrolases family 2 J159_03471 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain J159_03472 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation J159_03472 PF14508 Glycosyl-hydrolase 97 N-terminal J159_03472 PF10566 Glycoside hydrolase 97 J159_03474 PF00135 Carboxylesterase family J159_03475 PF08032 RNA 2'-O ribose methyltransferase substrate binding J159_03475 PF00588 SpoU rRNA Methylase family J159_03477 PF01433 Peptidase family M1 domain J159_03477 PF11838 ERAP1-like C-terminal domain J159_03479 PF13333 Integrase core domain J159_03479 PF00665 Integrase core domain J159_03479 PF13276 HTH-like domain J159_03480 PF01527 Transposase J159_03486 PF00873 AcrB/AcrD/AcrF family J159_03487 PF00529 HlyD membrane-fusion protein of T1SS J159_03487 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J159_03488 PF00009 Elongation factor Tu GTP binding domain J159_03489 PF01507 Phosphoadenosine phosphosulfate reductase family J159_03490 PF00667 FAD binding domain J159_03490 PF00258 Flavodoxin J159_03490 PF00175 Oxidoreductase NAD-binding domain J159_03491 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J159_03491 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J159_03492 PF01507 Phosphoadenosine phosphosulfate reductase family J159_03496 PF00072 Response regulator receiver domain J159_03496 PF01627 Hpt domain J159_03496 PF00512 His Kinase A (phospho-acceptor) domain J159_03496 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_03498 PF03466 LysR substrate binding domain J159_03498 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_03499 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J159_03499 PF10414 Sirohaem synthase dimerisation region J159_03499 PF14824 Sirohaem biosynthesis protein central J159_03500 PF00291 Pyridoxal-phosphate dependent enzyme J159_03502 PF01661 Macro domain J159_03503 PF00274 Fructose-bisphosphate aldolase class-I J159_03504 PF02887 Pyruvate kinase, alpha/beta domain J159_03504 PF00224 Pyruvate kinase, barrel domain J159_03506 PF00162 Phosphoglycerate kinase J159_03511 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J159_03511 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J159_03513 PF03922 OmpW family J159_03514 PF03922 OmpW family J159_03516 PF04273 Putative phosphatase (DUF442) J159_03516 PF00753 Metallo-beta-lactamase superfamily J159_03518 PF00528 Binding-protein-dependent transport system inner membrane component J159_03519 PF03459 TOBE domain J159_03519 PF00005 ABC transporter J159_03526 PF01476 LysM domain J159_03526 PF03734 L,D-transpeptidase catalytic domain J159_03527 PF04225 Opacity-associated protein A LysM-like domain J159_03527 PF01551 Peptidase family M23 J159_03529 PF00593 TonB dependent receptor J159_03529 PF07715 TonB-dependent Receptor Plug Domain J159_03530 PF12146 Serine aminopeptidase, S33 J159_03531 PF00456 Transketolase, thiamine diphosphate binding domain J159_03531 PF02780 Transketolase, C-terminal domain J159_03531 PF02779 Transketolase, pyrimidine binding domain J159_03532 PF00375 Sodium:dicarboxylate symporter family J159_03534 PF07584 Aerotolerance regulator N-terminal J159_03534 PF00092 von Willebrand factor type A domain J159_03538 PF17863 AAA lid domain J159_03538 PF07726 ATPase family associated with various cellular activities (AAA) J159_03540 PF07660 Secretin and TonB N terminus short domain J159_03540 PF03958 Bacterial type II/III secretion system short domain J159_03540 PF11741 AMIN domain J159_03540 PF00263 Bacterial type II and III secretion system protein J159_03545 PF00905 Penicillin binding protein transpeptidase domain J159_03545 PF00912 Transglycosylase J159_03545 PF17092 Penicillin-binding protein OB-like domain J159_03548 PF00285 Citrate synthase, C-terminal domain J159_03549 PF01197 Ribosomal protein L31 J159_03550 PF01156 Inosine-uridine preferring nucleoside hydrolase J159_03551 PF17191 RecG wedge domain J159_03551 PF00270 DEAD/DEAH box helicase J159_03551 PF00271 Helicase conserved C-terminal domain J159_03552 PF01042 Endoribonuclease L-PSP J159_03553 PF04607 Region found in RelA / SpoT proteins J159_03553 PF13291 ACT domain J159_03553 PF02824 TGS domain J159_03554 PF01192 RNA polymerase Rpb6 J159_03555 PF00625 Guanylate kinase J159_03556 PF03755 YicC-like family, N-terminal region J159_03556 PF08340 Domain of unknown function (DUF1732) J159_03557 PF03725 3' exoribonuclease family, domain 2 J159_03557 PF01138 3' exoribonuclease family, domain 1 J159_03559 PF01725 Ham1 family J159_03560 PF04055 Radical SAM superfamily J159_03560 PF06969 HemN C-terminal domain J159_03563 PF00557 Metallopeptidase family M24 J159_03565 PF00557 Metallopeptidase family M24 J159_03565 PF05195 Aminopeptidase P, N-terminal domain J159_03566 PF03695 Uncharacterised protein family (UPF0149) J159_03568 PF05164 Cell division protein ZapA J159_03570 PF01812 5-formyltetrahydrofolate cyclo-ligase family J159_03572 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J159_03574 PF13369 Transglutaminase-like superfamily J159_03575 PF00301 Rubredoxin J159_03576 PF02581 Thiamine monophosphate synthase J159_03579 PF00202 Aminotransferase class-III J159_03580 PF17874 MalT-like TPR region J159_03580 PF00196 Bacterial regulatory proteins, luxR family J159_03581 PF00127 Copper binding proteins, plastocyanin/azurin family J159_03582 PF00155 Aminotransferase class I and II J159_03584 PF00034 Cytochrome c J159_03584 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J159_03585 PF01593 Flavin containing amine oxidoreductase J159_03588 PF00202 Aminotransferase class-III J159_03589 PF00027 Cyclic nucleotide-binding domain J159_03589 PF00520 Ion transport protein J159_03592 PF01569 PAP2 superfamily J159_03593 PF01062 Bestrophin, RFP-TM, chloride channel J159_03595 PF08245 Mur ligase middle domain J159_03595 PF02875 Mur ligase family, glutamate ligase domain J159_03595 PF01225 Mur ligase family, catalytic domain J159_03597 PF00365 Phosphofructokinase J159_03599 PF03030 Inorganic H+ pyrophosphatase J159_03601 PF00719 Inorganic pyrophosphatase J159_03603 PF07715 TonB-dependent Receptor Plug Domain J159_03603 PF00593 TonB dependent receptor J159_03604 PF12833 Helix-turn-helix domain J159_03605 PF00486 Transcriptional regulatory protein, C terminal J159_03605 PF18500 CadC C-terminal domain 1 J159_03606 PF01964 Radical SAM ThiC family J159_03606 PF13667 ThiC-associated domain J159_03608 PF07715 TonB-dependent Receptor Plug Domain J159_03608 PF00593 TonB dependent receptor J159_03609 PF02203 Tar ligand binding domain homologue J159_03609 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_03609 PF00672 HAMP domain J159_03611 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J159_03611 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J159_03612 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J159_03612 PF00205 Thiamine pyrophosphate enzyme, central domain J159_03612 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J159_03614 PF00291 Pyridoxal-phosphate dependent enzyme J159_03615 PF00682 HMGL-like J159_03615 PF08502 LeuA allosteric (dimerisation) domain J159_03616 PF00180 Isocitrate/isopropylmalate dehydrogenase J159_03617 PF00694 Aconitase C-terminal domain J159_03618 PF00330 Aconitase family (aconitate hydratase) J159_03619 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_03620 PF17151 Periplasmic sensor domain J159_03620 PF00990 Diguanylate cyclase, GGDEF domain J159_03623 PF02321 Outer membrane efflux protein J159_03624 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) J159_03625 PF03279 Bacterial lipid A biosynthesis acyltransferase J159_03630 PF03949 Malic enzyme, NAD binding domain J159_03630 PF00390 Malic enzyme, N-terminal domain J159_03630 PF01515 Phosphate acetyl/butaryl transferase J159_03631 PF00375 Sodium:dicarboxylate symporter family J159_03633 PF02743 Cache domain J159_03633 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_03633 PF00512 His Kinase A (phospho-acceptor) domain J159_03634 PF07690 Major Facilitator Superfamily J159_03636 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_03636 PF03466 LysR substrate binding domain J159_03637 PF00248 Aldo/keto reductase family J159_03641 PF00072 Response regulator receiver domain J159_03641 PF00196 Bacterial regulatory proteins, luxR family J159_03643 PF08521 Two-component sensor kinase N-terminal J159_03643 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_03643 PF00512 His Kinase A (phospho-acceptor) domain J159_03644 PF00072 Response regulator receiver domain J159_03644 PF00486 Transcriptional regulatory protein, C terminal J159_03646 PF03600 Citrate transporter J159_03648 PF00106 short chain dehydrogenase J159_03649 PF00356 Bacterial regulatory proteins, lacI family J159_03652 PF00128 Alpha amylase, catalytic domain J159_03655 PF03193 RsgA GTPase J159_03659 PF07715 TonB-dependent Receptor Plug Domain J159_03659 PF00593 TonB dependent receptor J159_03660 PF01522 Polysaccharide deacetylase J159_03661 PF00462 Glutaredoxin J159_03664 PF01527 Transposase J159_03669 PF02645 Uncharacterised protein, DegV family COG1307 J159_03670 PF01327 Polypeptide deformylase J159_03671 PF03960 ArsC family J159_03674 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) J159_03675 PF01270 Glycosyl hydrolases family 8 J159_03676 PF03170 Bacterial cellulose synthase subunit J159_03677 PF07238 PilZ domain J159_03677 PF00535 Glycosyl transferase family 2 J159_03677 PF03552 Cellulose synthase J159_03680 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family J159_03680 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain J159_03687 PF07715 TonB-dependent Receptor Plug Domain J159_03687 PF00593 TonB dependent receptor J159_03689 PF07702 UTRA domain J159_03689 PF00392 Bacterial regulatory proteins, gntR family J159_03691 PF03958 Bacterial type II/III secretion system short domain J159_03691 PF00263 Bacterial type II and III secretion system protein J159_03693 PF10741 Type II secretion system (T2SS), protein M subtype b J159_03694 PF05137 Fimbrial assembly protein (PilN) J159_03695 PF03934 Type II secretion system (T2SS), protein K J159_03697 PF07963 Prokaryotic N-terminal methylation motif J159_03698 PF12019 Type II transport protein GspH J159_03699 PF08334 Type II secretion system (T2SS), protein G J159_03700 PF00482 Type II secretion system (T2SS), protein F J159_03701 PF00437 Type II/IV secretion system protein J159_03701 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J159_03702 PF04151 Bacterial pre-peptidase C-terminal domain J159_03702 PF00082 Subtilase family J159_03703 PF03895 YadA-like membrane anchor domain J159_03703 PF05658 Head domain of trimeric autotransporter adhesin J159_03703 PF05662 Coiled stalk of trimeric autotransporter adhesin J159_03703 PF13018 Extended Signal Peptide of Type V secretion system J159_03704 PF04151 Bacterial pre-peptidase C-terminal domain J159_03704 PF00082 Subtilase family J159_03705 PF05662 Coiled stalk of trimeric autotransporter adhesin J159_03705 PF13018 Extended Signal Peptide of Type V secretion system J159_03705 PF03895 YadA-like membrane anchor domain J159_03705 PF05658 Head domain of trimeric autotransporter adhesin J159_03706 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J159_03706 PF02769 AIR synthase related protein, C-terminal domain J159_03706 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal J159_03707 PF13098 Thioredoxin-like domain J159_03707 PF10411 Disulfide bond isomerase protein N-terminus J159_03708 PF00589 Phage integrase family J159_03708 PF02899 Phage integrase, N-terminal SAM-like domain J159_03711 PF03739 Lipopolysaccharide export system permease LptF/LptG J159_03713 PF00883 Cytosol aminopeptidase family, catalytic domain J159_03713 PF02789 Cytosol aminopeptidase family, N-terminal domain J159_03716 PF10458 Valyl tRNA synthetase tRNA binding arm J159_03716 PF08264 Anticodon-binding domain of tRNA J159_03716 PF00133 tRNA synthetases class I (I, L, M and V) J159_03717 PF00593 TonB dependent receptor J159_03717 PF07715 TonB-dependent Receptor Plug Domain J159_03718 PF01464 Transglycosylase SLT domain J159_03718 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J159_03719 PF00544 Pectate lyase J159_03722 PF01066 CDP-alcohol phosphatidyltransferase J159_03724 PF03129 Anticodon binding domain J159_03724 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J159_03724 PF04073 Aminoacyl-tRNA editing domain J159_03725 PF00816 H-NS histone family J159_03727 PF02405 Permease MlaE J159_03728 PF00005 ABC transporter J159_03729 PF02470 MlaD protein J159_03729 PF03886 ABC-type transport auxiliary lipoprotein component J159_03733 PF05045 Rhamnan synthesis protein F J159_03733 PF14307 Glycosyltransferase WbsX J159_03734 PF01144 Coenzyme A transferase J159_03735 PF01144 Coenzyme A transferase J159_03736 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J159_03736 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J159_03736 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J159_03736 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J159_03737 PF00483 Nucleotidyl transferase J159_03737 PF01050 Mannose-6-phosphate isomerase J159_03738 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J159_03738 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J159_03738 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J159_03739 PF04321 RmlD substrate binding domain J159_03740 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase J159_03741 PF00483 Nucleotidyl transferase J159_03742 PF16363 GDP-mannose 4,6 dehydratase J159_03743 PF01012 Electron transfer flavoprotein domain J159_03744 PF00766 Electron transfer flavoprotein FAD-binding domain J159_03744 PF01012 Electron transfer flavoprotein domain J159_03746 PF01040 UbiA prenyltransferase family J159_03747 PF01565 FAD binding domain J159_03747 PF04030 D-arabinono-1,4-lactone oxidase J159_03748 PF00106 short chain dehydrogenase J159_03750 PF01370 NAD dependent epimerase/dehydratase family J159_03751 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J159_03751 PF07992 Pyridine nucleotide-disulphide oxidoreductase J159_03756 PF00535 Glycosyl transferase family 2 J159_03758 PF00005 ABC transporter J159_03758 PF14524 Wzt C-terminal domain J159_03760 PF01053 Cys/Met metabolism PLP-dependent enzyme J159_03761 PF00571 CBS domain J159_03761 PF00291 Pyridoxal-phosphate dependent enzyme J159_03765 PF00437 Type II/IV secretion system protein J159_03766 PF14497 Glutathione S-transferase, C-terminal domain J159_03766 PF02798 Glutathione S-transferase, N-terminal domain J159_03768 PF00270 DEAD/DEAH box helicase J159_03768 PF00271 Helicase conserved C-terminal domain J159_03771 PF00593 TonB dependent receptor J159_03771 PF07715 TonB-dependent Receptor Plug Domain J159_03772 PF01242 6-pyruvoyl tetrahydropterin synthase J159_03775 PF13185 GAF domain J159_03777 PF00756 Putative esterase J159_03778 PF00593 TonB dependent receptor J159_03778 PF07715 TonB-dependent Receptor Plug Domain J159_03779 PF13419 Haloacid dehalogenase-like hydrolase J159_03780 PF11799 impB/mucB/samB family C-terminal domain J159_03780 PF00817 impB/mucB/samB family J159_03781 PF07977 FabA-like domain J159_03782 PF02801 Beta-ketoacyl synthase, C-terminal domain J159_03782 PF00109 Beta-ketoacyl synthase, N-terminal domain J159_03784 PF01432 Peptidase family M3 J159_03787 PF00394 Multicopper oxidase J159_03787 PF07732 Multicopper oxidase J159_03787 PF07731 Multicopper oxidase J159_03788 PF05275 Copper resistance protein B precursor (CopB) J159_03789 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J159_03795 PF01380 SIS domain J159_03796 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J159_03797 PF00005 ABC transporter J159_03797 PF12704 MacB-like periplasmic core domain J159_03797 PF02687 FtsX-like permease family J159_03798 PF12704 MacB-like periplasmic core domain J159_03798 PF02687 FtsX-like permease family J159_03798 PF00005 ABC transporter J159_03799 PF02687 FtsX-like permease family J159_03799 PF12704 MacB-like periplasmic core domain J159_03801 PF00158 Sigma-54 interaction domain J159_03801 PF00072 Response regulator receiver domain J159_03802 PF14602 Hexapeptide repeat of succinyl-transferase J159_03802 PF00132 Bacterial transferase hexapeptide (six repeats) J159_03802 PF12804 MobA-like NTP transferase domain J159_03805 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J159_03805 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J159_03806 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J159_03806 PF02874 ATP synthase alpha/beta family, beta-barrel domain J159_03807 PF00231 ATP synthase J159_03808 PF02874 ATP synthase alpha/beta family, beta-barrel domain J159_03808 PF00306 ATP synthase alpha/beta chain, C terminal domain J159_03808 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J159_03809 PF00213 ATP synthase delta (OSCP) subunit J159_03810 PF00430 ATP synthase B/B' CF(0) J159_03811 PF00137 ATP synthase subunit C J159_03812 PF00119 ATP synthase A chain J159_03816 PF07992 Pyridine nucleotide-disulphide oxidoreductase J159_03816 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J159_03818 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J159_03818 PF00364 Biotin-requiring enzyme J159_03818 PF02817 e3 binding domain J159_03824 PF03180 NLPA lipoprotein J159_03825 PF00528 Binding-protein-dependent transport system inner membrane component J159_03826 PF00005 ABC transporter J159_03826 PF09383 NIL domain J159_03827 PF00892 EamA-like transporter family J159_03828 PF04461 Protein of unknown function (DUF520) J159_03830 PF00989 PAS fold J159_03830 PF01627 Hpt domain J159_03830 PF18415 Histidine kinase receptor ArcB trans-membrane domain J159_03830 PF00512 His Kinase A (phospho-acceptor) domain J159_03830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_03830 PF00072 Response regulator receiver domain J159_03834 PF13419 Haloacid dehalogenase-like hydrolase J159_03835 PF00849 RNA pseudouridylate synthase J159_03835 PF01479 S4 domain J159_03836 PF05175 Methyltransferase small domain J159_03836 PF08468 Methyltransferase small domain N-terminal J159_03838 PF07995 Glucose / Sorbosone dehydrogenase J159_03840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_03840 PF00989 PAS fold J159_03840 PF00512 His Kinase A (phospho-acceptor) domain J159_03844 PF00842 Alanine racemase, C-terminal domain J159_03844 PF01168 Alanine racemase, N-terminal domain J159_03845 PF01266 FAD dependent oxidoreductase J159_03846 PF01037 Lrp/AsnC ligand binding domain J159_03848 PF01641 SelR domain J159_03850 PF01618 MotA/TolQ/ExbB proton channel family J159_03851 PF13677 Membrane MotB of proton-channel complex MotA/MotB J159_03851 PF00691 OmpA family J159_03856 PF01061 ABC-2 type transporter J159_03857 PF00005 ABC transporter J159_03858 PF00999 Sodium/hydrogen exchanger family J159_03859 PF02469 Fasciclin domain J159_03860 PF03167 Uracil DNA glycosylase superfamily J159_03862 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J159_03864 PF03466 LysR substrate binding domain J159_03864 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_03865 PF03358 NADPH-dependent FMN reductase J159_03866 PF00248 Aldo/keto reductase family J159_03868 PF01431 Peptidase family M13 J159_03868 PF05649 Peptidase family M13 J159_03872 PF13520 Amino acid permease J159_03874 PF00072 Response regulator receiver domain J159_03874 PF04397 LytTr DNA-binding domain J159_03875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_03875 PF00672 HAMP domain J159_03875 PF06580 Histidine kinase J159_03875 PF02743 Cache domain J159_03878 PF05974 Domain of unknown function (DUF892) J159_03879 PF05067 Manganese containing catalase J159_03882 PF01739 CheR methyltransferase, SAM binding domain J159_03882 PF03705 CheR methyltransferase, all-alpha domain J159_03882 PF01339 CheB methylesterase J159_03882 PF08448 PAS fold J159_03885 PF02954 Bacterial regulatory protein, Fis family J159_03885 PF00158 Sigma-54 interaction domain J159_03885 PF00072 Response regulator receiver domain J159_03887 PF01654 Cytochrome bd terminal oxidase subunit I J159_03888 PF02322 Cytochrome bd terminal oxidase subunit II J159_03892 PF16363 GDP-mannose 4,6 dehydratase J159_03894 PF03275 UDP-galactopyranose mutase J159_03896 PF00664 ABC transporter transmembrane region J159_03896 PF00005 ABC transporter J159_03899 PF00107 Zinc-binding dehydrogenase J159_03899 PF08240 Alcohol dehydrogenase GroES-like domain J159_03899 PF13823 Alcohol dehydrogenase GroES-associated J159_03908 PF07715 TonB-dependent Receptor Plug Domain J159_03908 PF00593 TonB dependent receptor J159_03911 PF00005 ABC transporter J159_03913 PF03466 LysR substrate binding domain J159_03913 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_03914 PF01042 Endoribonuclease L-PSP J159_03916 PF01527 Transposase J159_03920 PF02203 Tar ligand binding domain homologue J159_03920 PF00672 HAMP domain J159_03920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J159_03923 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_03923 PF03466 LysR substrate binding domain J159_03924 PF02525 Flavodoxin-like fold J159_03933 PF00557 Metallopeptidase family M24 J159_03938 PF03979 Sigma-70 factor, region 1.1 J159_03938 PF04545 Sigma-70, region 4 J159_03938 PF04539 Sigma-70 region 3 J159_03938 PF04542 Sigma-70 region 2 J159_03938 PF00140 Sigma-70 factor, region 1.2 J159_03938 PF04546 Sigma-70, non-essential region J159_03939 PF02580 D-Tyr-tRNA(Tyr) deacylase J159_03940 PF03279 Bacterial lipid A biosynthesis acyltransferase J159_03942 PF00925 GTP cyclohydrolase II J159_03946 PF00535 Glycosyl transferase family 2 J159_03949 PF01029 NusB family J159_03949 PF01189 16S rRNA methyltransferase RsmB/F J159_03950 PF00551 Formyl transferase J159_03950 PF02911 Formyl transferase, C-terminal domain J159_03951 PF01327 Polypeptide deformylase J159_03952 PF01476 LysM domain J159_03953 PF02481 DNA recombination-mediator protein A J159_03953 PF17782 DprA winged helix domain J159_03954 PF04361 Protein of unknown function (DUF494) J159_03955 PF00114 Pilin (bacterial filament) J159_03955 PF07963 Prokaryotic N-terminal methylation motif J159_03957 PF13368 Topoisomerase C-terminal repeat J159_03957 PF01751 Toprim domain J159_03957 PF01131 DNA topoisomerase J159_03958 PF01300 Telomere recombination J159_03963 PF01343 Peptidase family S49 J159_03964 PF01554 MatE J159_03968 PF18074 Primosomal protein N C-terminal domain J159_03968 PF00271 Helicase conserved C-terminal domain J159_03968 PF00270 DEAD/DEAH box helicase J159_03968 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J159_03968 PF17764 3′ DNA-binding domain (3′BD) J159_03969 PF13417 Glutathione S-transferase, N-terminal domain J159_03969 PF00043 Glutathione S-transferase, C-terminal domain J159_03972 PF07992 Pyridine nucleotide-disulphide oxidoreductase J159_03973 PF03458 UPF0126 domain J159_03974 PF04542 Sigma-70 region 2 J159_03974 PF04545 Sigma-70, region 4 J159_03975 PF03167 Uracil DNA glycosylase superfamily J159_03976 PF00072 Response regulator receiver domain J159_03976 PF01339 CheB methylesterase J159_03977 PF18075 FtsX extracellular domain J159_03978 PF00005 ABC transporter J159_03979 PF00270 DEAD/DEAH box helicase J159_03979 PF12300 ATP-dependent RNA helicase RhlB J159_03979 PF00271 Helicase conserved C-terminal domain J159_03980 PF00085 Thioredoxin J159_03981 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J159_03981 PF07498 Rho termination factor, N-terminal domain J159_03981 PF07497 Rho termination factor, RNA-binding domain J159_03982 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) J159_03983 PF03466 LysR substrate binding domain J159_03983 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_03985 PF03971 Monomeric isocitrate dehydrogenase J159_03988 PF09704 CRISPR-associated protein (Cas_Cas5) J159_03993 PF01867 CRISPR associated protein Cas1 J159_03994 PF09827 CRISPR associated protein Cas2 J159_03996 PF04972 BON domain J159_03996 PF01476 LysM domain J159_03997 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J159_03997 PF14489 QueF-like protein J159_03998 PF01546 Peptidase family M20/M25/M40 J159_03998 PF07687 Peptidase dimerisation domain J159_03999 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J159_04000 PF00873 AcrB/AcrD/AcrF family J159_04001 PF00873 AcrB/AcrD/AcrF family J159_04002 PF07063 Domain of unknown function (DUF1338) J159_04010 PF01427 D-ala-D-ala dipeptidase J159_04011 PF01510 N-acetylmuramoyl-L-alanine amidase J159_04013 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J159_04013 PF13378 Enolase C-terminal domain-like J159_04015 PF13520 Amino acid permease J159_04018 PF05360 yiaA/B two helix domain J159_04019 PF07995 Glucose / Sorbosone dehydrogenase J159_04020 PF01915 Glycosyl hydrolase family 3 C-terminal domain J159_04020 PF00933 Glycosyl hydrolase family 3 N terminal domain J159_04020 PF14310 Fibronectin type III-like domain J159_04021 PF02152 Dihydroneopterin aldolase J159_04022 PF00814 Glycoprotease family J159_04023 PF01165 Ribosomal protein S21 J159_04024 PF09424 Yqey-like protein J159_04025 PF03631 Virulence factor BrkB J159_04026 PF08275 DNA primase catalytic core, N-terminal domain J159_04026 PF08278 DNA primase DnaG DnaB-binding J159_04026 PF10410 DnaB-helicase binding domain of primase J159_04026 PF01807 CHC2 zinc finger J159_04027 PF13593 SBF-like CPA transporter family (DUF4137) J159_04029 PF01040 UbiA prenyltransferase family J159_04034 PF00510 Cytochrome c oxidase subunit III J159_04035 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 J159_04037 PF00115 Cytochrome C and Quinol oxidase polypeptide I J159_04038 PF02790 Cytochrome C oxidase subunit II, transmembrane domain J159_04038 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J159_04040 PF00171 Aldehyde dehydrogenase family J159_04040 PF01619 Proline dehydrogenase J159_04040 PF14850 DNA-binding domain of Proline dehydrogenase J159_04040 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J159_04048 PF00579 tRNA synthetases class I (W and Y) J159_04049 PF04225 Opacity-associated protein A LysM-like domain J159_04049 PF01551 Peptidase family M23 J159_04050 PF03702 Anhydro-N-acetylmuramic acid kinase J159_04052 PF07690 Major Facilitator Superfamily J159_04053 PF03372 Endonuclease/Exonuclease/phosphatase family J159_04054 PF00156 Phosphoribosyl transferase domain J159_04056 PF13614 AAA domain J159_04057 PF02195 ParB-like nuclease domain J159_04057 PF17762 HTH domain found in ParB protein J159_04059 PF01370 NAD dependent epimerase/dehydratase family J159_04060 PF00535 Glycosyl transferase family 2 J159_04063 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J159_04063 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J159_04063 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J159_04063 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J159_04064 PF00692 dUTPase J159_04065 PF02441 Flavoprotein J159_04065 PF04127 DNA / pantothenate metabolism flavoprotein J159_04066 PF04002 RadC-like JAB domain J159_04067 PF03485 Arginyl tRNA synthetase N terminal domain J159_04067 PF00750 tRNA synthetases class I (R) J159_04067 PF05746 DALR anticodon binding domain J159_04070 PF00106 short chain dehydrogenase J159_04071 PF01757 Acyltransferase family J159_04072 PF03033 Glycosyltransferase family 28 N-terminal domain J159_04073 PF00975 Thioesterase domain J159_04073 PF00501 AMP-binding enzyme J159_04073 PF13193 AMP-binding enzyme C-terminal domain J159_04073 PF00668 Condensation domain J159_04073 PF00550 Phosphopantetheine attachment site J159_04074 PF17944 Arginine decarboxylase C-terminal helical extension J159_04074 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J159_04074 PF17810 Arginine decarboxylase helical bundle domain J159_04075 PF17284 Spermidine synthase tetramerisation domain J159_04080 PF00543 Nitrogen regulatory protein P-II J159_04081 PF04380 Membrane fusogenic activity J159_04082 PF13335 Magnesium chelatase, subunit ChlI C-terminal J159_04082 PF01078 Magnesium chelatase, subunit ChlI J159_04085 PF12792 CSS motif domain associated with EAL J159_04085 PF00563 EAL domain J159_04086 PF00487 Fatty acid desaturase J159_04087 PF00970 Oxidoreductase FAD-binding domain J159_04087 PF00175 Oxidoreductase NAD-binding domain J159_04087 PF00111 2Fe-2S iron-sulfur cluster binding domain J159_04088 PF00440 Bacterial regulatory proteins, tetR family J159_04094 PF01139 tRNA-splicing ligase RtcB J159_04102 PF01370 NAD dependent epimerase/dehydratase family J159_04102 PF08338 Domain of unknown function (DUF1731) J159_04103 PF00486 Transcriptional regulatory protein, C terminal J159_04103 PF00072 Response regulator receiver domain J159_04104 PF08521 Two-component sensor kinase N-terminal J159_04104 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_04104 PF00512 His Kinase A (phospho-acceptor) domain J159_04108 PF00595 PDZ domain J159_04112 PF01594 AI-2E family transporter J159_04113 PF13419 Haloacid dehalogenase-like hydrolase J159_04114 PF00883 Cytosol aminopeptidase family, catalytic domain J159_04114 PF02789 Cytosol aminopeptidase family, N-terminal domain J159_04116 PF08281 Sigma-70, region 4 J159_04116 PF04542 Sigma-70 region 2 J159_04117 PF00199 Catalase J159_04120 PF00196 Bacterial regulatory proteins, luxR family J159_04120 PF00072 Response regulator receiver domain J159_04121 PF07730 Histidine kinase J159_04122 PF13533 Biotin-lipoyl like J159_04123 PF00005 ABC transporter J159_04127 PF00892 EamA-like transporter family J159_04128 PF00892 EamA-like transporter family J159_04129 PF00892 EamA-like transporter family J159_04132 PF00753 Metallo-beta-lactamase superfamily J159_04133 PF00579 tRNA synthetases class I (W and Y) J159_04134 PF05532 CsbD-like J159_04137 PF00491 Arginase family J159_04142 PF02223 Thymidylate kinase J159_04145 PF03309 Type III pantothenate kinase J159_04146 PF02237 Biotin protein ligase C terminal domain J159_04146 PF03099 Biotin/lipoate A/B protein ligase family J159_04146 PF08279 HTH domain J159_04148 PF06167 Glucose-regulated metallo-peptidase M90 J159_04151 PF00512 His Kinase A (phospho-acceptor) domain J159_04151 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_04151 PF00672 HAMP domain J159_04152 PF00486 Transcriptional regulatory protein, C terminal J159_04152 PF00072 Response regulator receiver domain J159_04154 PF01207 Dihydrouridine synthase (Dus) J159_04157 PF06628 Catalase-related immune-responsive J159_04157 PF00199 Catalase J159_04158 PF06733 DEAD_2 J159_04158 PF13307 Helicase C-terminal domain J159_04161 PF01488 Shikimate / quinate 5-dehydrogenase J159_04161 PF08501 Shikimate dehydrogenase substrate binding domain J159_04161 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J159_04163 PF00175 Oxidoreductase NAD-binding domain J159_04163 PF00258 Flavodoxin J159_04163 PF00667 FAD binding domain J159_04165 PF03466 LysR substrate binding domain J159_04165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_04167 PF00490 Delta-aminolevulinic acid dehydratase J159_04171 PF00326 Prolyl oligopeptidase family J159_04171 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J159_04172 PF02798 Glutathione S-transferase, N-terminal domain J159_04172 PF00043 Glutathione S-transferase, C-terminal domain J159_04176 PF04820 Tryptophan halogenase J159_04179 PF00005 ABC transporter J159_04181 PF01381 Helix-turn-helix J159_04183 PF01229 Glycosyl hydrolases family 39 J159_04184 PF02583 Metal-sensitive transcriptional repressor J159_04185 PF16916 Dimerisation domain of Zinc Transporter J159_04185 PF01545 Cation efflux family J159_04187 PF00593 TonB dependent receptor J159_04187 PF07715 TonB-dependent Receptor Plug Domain J159_04189 PF12833 Helix-turn-helix domain J159_04189 PF01965 DJ-1/PfpI family J159_04190 PF00970 Oxidoreductase FAD-binding domain J159_04190 PF00111 2Fe-2S iron-sulfur cluster binding domain J159_04190 PF00175 Oxidoreductase NAD-binding domain J159_04191 PF00005 ABC transporter J159_04192 PF01061 ABC-2 type transporter J159_04195 PF08546 Ketopantoate reductase PanE/ApbA C terminal J159_04195 PF02558 Ketopantoate reductase PanE/ApbA J159_04201 PF00268 Ribonucleotide reductase, small chain J159_04202 PF02867 Ribonucleotide reductase, barrel domain J159_04202 PF00317 Ribonucleotide reductase, all-alpha domain J159_04202 PF03477 ATP cone domain J159_04204 PF00583 Acetyltransferase (GNAT) family J159_04204 PF13380 CoA binding domain J159_04204 PF13607 Succinyl-CoA ligase like flavodoxin domain J159_04205 PF03448 MgtE intracellular N domain J159_04205 PF01769 Divalent cation transporter J159_04205 PF00571 CBS domain J159_04206 PF00194 Eukaryotic-type carbonic anhydrase J159_04207 PF00999 Sodium/hydrogen exchanger family J159_04207 PF02254 TrkA-N domain J159_04208 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J159_04208 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J159_04209 PF00723 Glycosyl hydrolases family 15 J159_04212 PF05166 YcgL domain J159_04213 PF02801 Beta-ketoacyl synthase, C-terminal domain J159_04213 PF00109 Beta-ketoacyl synthase, N-terminal domain J159_04215 PF00535 Glycosyl transferase family 2 J159_04226 PF07977 FabA-like domain J159_04227 PF01553 Acyltransferase J159_04229 PF00550 Phosphopantetheine attachment site J159_04230 PF04820 Tryptophan halogenase J159_04234 PF00326 Prolyl oligopeptidase family J159_04234 PF07676 WD40-like Beta Propeller Repeat J159_04237 PF01218 Coproporphyrinogen III oxidase J159_04238 PF01612 3'-5' exonuclease J159_04238 PF01367 5'-3' exonuclease, C-terminal SAM fold J159_04238 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J159_04238 PF00476 DNA polymerase family A J159_04244 PF00069 Protein kinase domain J159_04244 PF03793 PASTA domain J159_04252 PF04717 Type VI secretion system, phage-baseplate injector J159_04255 PF00069 Protein kinase domain J159_04255 PF03793 PASTA domain J159_04257 PF04542 Sigma-70 region 2 J159_04257 PF08281 Sigma-70, region 4 J159_04260 PF00328 Histidine phosphatase superfamily (branch 2) J159_04267 PF17871 AAA lid domain J159_04267 PF10431 C-terminal, D2-small domain, of ClpB protein J159_04267 PF00004 ATPase family associated with various cellular activities (AAA) J159_04267 PF07724 AAA domain (Cdc48 subfamily) J159_04272 PF05638 Type VI secretion system effector, Hcp J159_04277 PF12464 Maltose acetyltransferase J159_04277 PF14602 Hexapeptide repeat of succinyl-transferase J159_04278 PF13361 UvrD-like helicase C-terminal domain J159_04278 PF00580 UvrD/REP helicase N-terminal domain J159_04280 PF13091 PLD-like domain J159_04280 PF13396 Phospholipase_D-nuclease N-terminal J159_04281 PF03466 LysR substrate binding domain J159_04281 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_04282 PF03737 Aldolase/RraA J159_04283 PF04303 PrpF protein J159_04284 PF04909 Amidohydrolase J159_04285 PF00471 Ribosomal protein L33 J159_04286 PF00830 Ribosomal L28 family J159_04287 PF00873 AcrB/AcrD/AcrF family J159_04288 PF13533 Biotin-lipoyl like J159_04292 PF02527 rRNA small subunit methyltransferase G J159_04293 PF09423 PhoD-like phosphatase J159_04293 PF16655 PhoD-like phosphatase, N-terminal domain J159_04295 PF16655 PhoD-like phosphatase, N-terminal domain J159_04295 PF09423 PhoD-like phosphatase J159_04296 PF01648 4'-phosphopantetheinyl transferase superfamily J159_04297 PF04226 Transglycosylase associated protein J159_04299 PF03372 Endonuclease/Exonuclease/phosphatase family J159_04301 PF00480 ROK family J159_04303 PF09312 SurA N-terminal domain J159_04305 PF00474 Sodium:solute symporter family J159_04306 PF04341 Protein of unknown function, DUF485 J159_04308 PF00501 AMP-binding enzyme J159_04308 PF16177 Acetyl-coenzyme A synthetase N-terminus J159_04308 PF13193 AMP-binding enzyme C-terminal domain J159_04309 PF00196 Bacterial regulatory proteins, luxR family J159_04309 PF00072 Response regulator receiver domain J159_04314 PF04616 Glycosyl hydrolases family 43 J159_04314 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J159_04315 PF00248 Aldo/keto reductase family J159_04318 PF01557 Fumarylacetoacetate (FAA) hydrolase family J159_04319 PF13378 Enolase C-terminal domain-like J159_04319 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J159_04321 PF05336 L-rhamnose mutarotase J159_04322 PF07690 Major Facilitator Superfamily J159_04323 PF09339 IclR helix-turn-helix domain J159_04323 PF01614 Bacterial transcriptional regulator J159_04324 PF02659 Putative manganese efflux pump J159_04325 PF00512 His Kinase A (phospho-acceptor) domain J159_04325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_04327 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J159_04327 PF06165 Glycosyltransferase family 36 J159_04330 PF01011 PQQ enzyme repeat J159_04330 PF13360 PQQ-like domain J159_04330 PF13570 PQQ-like domain J159_04334 PF04357 TamB, inner membrane protein subunit of TAM complex J159_04335 PF17243 POTRA domain TamA domain 1 J159_04335 PF01103 Surface antigen J159_04338 PF01527 Transposase J159_04339 PF13333 Integrase core domain J159_04339 PF00665 Integrase core domain J159_04339 PF13276 HTH-like domain J159_04340 PF00005 ABC transporter J159_04340 PF00664 ABC transporter transmembrane region J159_04340 PF03412 Peptidase C39 family J159_04342 PF02092 Glycyl-tRNA synthetase beta subunit J159_04342 PF05746 DALR anticodon binding domain J159_04343 PF02091 Glycyl-tRNA synthetase alpha subunit J159_04344 PF00437 Type II/IV secretion system protein J159_04344 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J159_04346 PF00117 Glutamine amidotransferase class-I J159_04346 PF00958 GMP synthase C terminal domain J159_04348 PF00902 Sec-independent protein translocase protein (TatC) J159_04349 PF02416 mttA/Hcf106 family J159_04350 PF02416 mttA/Hcf106 family J159_04352 PF00762 Ferrochelatase J159_04353 PF12697 Alpha/beta hydrolase family J159_04355 PF04381 Putative exonuclease, RdgC J159_04356 PF01171 PP-loop family J159_04358 PF00356 Bacterial regulatory proteins, lacI family J159_04359 PF03648 Glycosyl hydrolase family 67 N-terminus J159_04359 PF07488 Glycosyl hydrolase family 67 middle domain J159_04359 PF07477 Glycosyl hydrolase family 67 C-terminus J159_04361 PF13378 Enolase C-terminal domain-like J159_04361 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J159_04362 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J159_04362 PF04616 Glycosyl hydrolases family 43 J159_04363 PF00933 Glycosyl hydrolase family 3 N terminal domain J159_04363 PF01915 Glycosyl hydrolase family 3 C-terminal domain J159_04363 PF07691 PA14 domain J159_04363 PF14310 Fibronectin type III-like domain J159_04364 PF01232 Mannitol dehydrogenase Rossmann domain J159_04364 PF08125 Mannitol dehydrogenase C-terminal domain J159_04369 PF00171 Aldehyde dehydrogenase family J159_04372 PF00202 Aminotransferase class-III J159_04373 PF00202 Aminotransferase class-III J159_04375 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J159_04375 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J159_04378 PF08450 SMP-30/Gluconolactonase/LRE-like region J159_04379 PF00331 Glycosyl hydrolase family 10 J159_04380 PF16355 Domain of unknown function (DUF4982) J159_04380 PF02837 Glycosyl hydrolases family 2, sugar binding domain J159_04380 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J159_04380 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J159_04380 PF00703 Glycosyl hydrolases family 2 J159_04381 PF02614 Glucuronate isomerase J159_04382 PF00553 Cellulose binding domain J159_04382 PF03422 Carbohydrate binding module (family 6) J159_04382 PF00331 Glycosyl hydrolase family 10 J159_04384 PF03422 Carbohydrate binding module (family 6) J159_04384 PF00553 Cellulose binding domain J159_04384 PF00331 Glycosyl hydrolase family 10 J159_04388 PF04616 Glycosyl hydrolases family 43 J159_04398 PF14765 Polyketide synthase dehydratase J159_04398 PF00550 Phosphopantetheine attachment site J159_04398 PF08659 KR domain J159_04398 PF02801 Beta-ketoacyl synthase, C-terminal domain J159_04398 PF00109 Beta-ketoacyl synthase, N-terminal domain J159_04398 PF08240 Alcohol dehydrogenase GroES-like domain J159_04398 PF00698 Acyl transferase domain J159_04398 PF16197 Ketoacyl-synthetase C-terminal extension J159_04398 PF00107 Zinc-binding dehydrogenase J159_04399 PF01553 Acyltransferase J159_04401 PF00356 Bacterial regulatory proteins, lacI family J159_04404 PF04820 Tryptophan halogenase J159_04405 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J159_04406 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) J159_04408 PF04337 Protein of unknown function, DUF480 J159_04411 PF13361 UvrD-like helicase C-terminal domain J159_04411 PF00580 UvrD/REP helicase N-terminal domain J159_04412 PF00265 Thymidine kinase J159_04413 PF01590 GAF domain J159_04413 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J159_04413 PF08446 PAS fold J159_04413 PF00360 Phytochrome region J159_04413 PF00512 His Kinase A (phospho-acceptor) domain J159_04414 PF04349 Periplasmic glucan biosynthesis protein, MdoG J159_04416 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J159_04416 PF06827 Zinc finger found in FPG and IleRS J159_04416 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J159_04423 PF03594 Benzoate membrane transport protein J159_04424 PF00360 Phytochrome region J159_04424 PF13426 PAS domain J159_04424 PF08446 PAS fold J159_04424 PF01590 GAF domain J159_04425 PF01126 Heme oxygenase J159_04426 PF07690 Major Facilitator Superfamily J159_04427 PF01263 Aldose 1-epimerase J159_04429 PF02810 SEC-C motif J159_04430 PF01925 Sulfite exporter TauE/SafE J159_04434 PF01227 GTP cyclohydrolase I J159_04436 PF07869 Protein of unknown function (DUF1656) J159_04437 PF00529 HlyD membrane-fusion protein of T1SS J159_04437 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J159_04438 PF02321 Outer membrane efflux protein J159_04439 PF04632 Fusaric acid resistance protein family J159_04440 PF00083 Sugar (and other) transporter J159_04441 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family J159_04442 PF13396 Phospholipase_D-nuclease N-terminal J159_04442 PF13091 PLD-like domain J159_04447 PF01850 PIN domain J159_04452 PF00849 RNA pseudouridylate synthase J159_04454 PF01527 Transposase J159_04455 PF13276 HTH-like domain J159_04455 PF13333 Integrase core domain J159_04455 PF00665 Integrase core domain J159_04458 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J159_04458 PF00289 Biotin carboxylase, N-terminal domain J159_04458 PF02785 Biotin carboxylase C-terminal domain J159_04459 PF01425 Amidase J159_04466 PF13538 UvrD-like helicase C-terminal domain J159_04469 PF00580 UvrD/REP helicase N-terminal domain J159_04469 PF13361 UvrD-like helicase C-terminal domain J159_04469 PF12705 PD-(D/E)XK nuclease superfamily J159_04470 PF17946 RecC C-terminal domain J159_04472 PF00005 ABC transporter J159_04473 PF02405 Permease MlaE J159_04474 PF02470 MlaD protein J159_04475 PF05494 MlaC protein J159_04477 PF04333 MlaA lipoprotein J159_04479 PF00255 Glutathione peroxidase J159_04481 PF02646 RmuC family J159_04482 PF00107 Zinc-binding dehydrogenase J159_04482 PF08240 Alcohol dehydrogenase GroES-like domain J159_04483 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J159_04483 PF03466 LysR substrate binding domain J159_04485 PF00043 Glutathione S-transferase, C-terminal domain J159_04485 PF13417 Glutathione S-transferase, N-terminal domain J159_04487 PF13520 Amino acid permease J159_04488 PF17678 Glycosyl hydrolase family 92 N-terminal domain J159_04488 PF07971 Glycosyl hydrolase family 92 J159_04489 PF10947 Protein of unknown function (DUF2628) J159_04490 PF00990 Diguanylate cyclase, GGDEF domain J159_04491 PF05651 Putative sugar diacid recognition J159_04491 PF17853 GGDEF-like domain J159_04491 PF13556 PucR C-terminal helix-turn-helix domain J159_04492 PF02595 Glycerate kinase family J159_04493 PF07690 Major Facilitator Superfamily J159_04496 PF10672 S-adenosylmethionine-dependent methyltransferase J159_04496 PF17785 PUA-like domain J159_04498 PF03741 Integral membrane protein TerC family J159_04499 PF01694 Rhomboid family J159_04500 PF03009 Glycerophosphoryl diester phosphodiesterase family J159_04502 PF01569 PAP2 superfamily J159_04503 PF01926 50S ribosome-binding GTPase J159_04503 PF10396 GTP-binding protein TrmE N-terminus J159_04503 PF12631 MnmE helical domain J159_04504 PF01522 Polysaccharide deacetylase J159_04505 PF02096 60Kd inner membrane protein J159_04505 PF14849 YidC periplasmic domain J159_04506 PF00825 Ribonuclease P J159_04507 PF00468 Ribosomal protein L34