J159_00006 SM00857 Resolvase, N terminal domain J159_00007 SM00966 SpoVT / AbrB like domain J159_00029 SM00857 Resolvase, N terminal domain J159_00034 SM00670 Large family of predicted nucleotide-binding domains J159_00036 SM00857 Resolvase, N terminal domain J159_00096 SM00470 ParB-like nuclease domain J159_00103 SM00857 Resolvase, N terminal domain J159_00108 SM00670 Large family of predicted nucleotide-binding domains J159_00110 SM00857 Resolvase, N terminal domain J159_00111 SM00382 ATPases associated with a variety of cellular activities J159_00111 SM00760 Bacterial dnaA protein helix-turn-helix domain J159_00112 SM00480 DNA polymerase III beta subunit J159_00115 SM00387 Histidine kinase-like ATPases J159_00115 SM00433 TopoisomeraseII J159_00118 SM00028 Tetratricopeptide repeats J159_00125 SM00155 Phospholipase D. Active site motifs. J159_00128 SM00729 Elongator protein 3, MiaB family, Radical SAM J159_00134 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J159_00134 SM00245 tail specific protease J159_00142 SM00829 Enoylreductase J159_00167 SM00382 ATPases associated with a variety of cellular activities J159_00191 SM00487 DEAD-like helicases superfamily J159_00191 SM00490 helicase superfamily c-terminal domain J159_00195 SM00822 J159_00195 J159_00196 SM00822 J159_00196 J159_00245 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen J159_00249 SM00421 helix_turn_helix, Lux Regulon J159_00249 SM00448 cheY-homologous receiver domain J159_00253 SM00862 Transcriptional regulatory protein, C terminal J159_00269 SM00642 Alpha-amylase domain J159_00270 SM00642 Alpha-amylase domain J159_00271 SM00642 Alpha-amylase domain J159_00281 SM00354 helix_turn _helix lactose operon repressor J159_00289 SM00344 helix_turn_helix ASNC type J159_00293 SM00382 ATPases associated with a variety of cellular activities J159_00296 SM00382 ATPases associated with a variety of cellular activities J159_00302 SM00530 Helix-turn-helix XRE-family like proteins J159_00307 SM00855 Phosphoglycerate mutase family J159_00308 SM00867 YceI-like domain J159_00309 SM00155 Phospholipase D. Active site motifs. J159_00311 SM00563 Phosphate acyltransferases J159_00314 SM00028 Tetratricopeptide repeats J159_00316 SM00829 Enoylreductase J159_00319 SM01230 J159_00319 J159_00320 SM00938 Nitrogen regulatory protein P-II J159_00322 SM00387 Histidine kinase-like ATPases J159_00322 SM00388 His Kinase A (phosphoacceptor) domain J159_00323 SM00382 ATPases associated with a variety of cellular activities J159_00323 SM00448 cheY-homologous receiver domain J159_00335 SM00450 Rhodanese Homology Domain J159_00340 SM00387 Histidine kinase-like ATPases J159_00340 SM00388 His Kinase A (phosphoacceptor) domain J159_00341 SM00382 ATPases associated with a variety of cellular activities J159_00341 SM00448 cheY-homologous receiver domain J159_00363 SM00563 Phosphate acyltransferases J159_00369 SM00342 helix_turn_helix, arabinose operon control protein J159_00374 SM00100 Cyclic nucleotide-monophosphate binding domain J159_00374 SM00267 diguanylate cyclase J159_00379 SM00878 Biotin carboxylase C-terminal domain J159_00384 SM00953 J159_00384 J159_00392 SM00833 Cobalamin synthesis protein cobW C-terminal domain J159_00397 SM00347 helix_turn_helix multiple antibiotic resistance protein J159_00403 SM00829 Enoylreductase J159_00409 SM00487 DEAD-like helicases superfamily J159_00409 SM00490 helicase superfamily c-terminal domain J159_00409 SM00847 Helicase associated domain (HA2) Add an annotation J159_00434 SM00422 helix_turn_helix, mercury resistance J159_00441 SM00448 cheY-homologous receiver domain J159_00441 SM00862 Transcriptional regulatory protein, C terminal J159_00442 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_00442 SM00387 Histidine kinase-like ATPases J159_00442 SM00388 His Kinase A (phosphoacceptor) domain J159_00468 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J159_00469 SM00347 helix_turn_helix multiple antibiotic resistance protein J159_00473 SM00342 helix_turn_helix, arabinose operon control protein J159_00480 SM00420 helix_turn_helix, Deoxyribose operon repressor J159_00480 SM01134 J159_00480 J159_00483 SM00882 Coenzyme A transferase J159_00484 SM00882 Coenzyme A transferase J159_00488 SM00998 Adenylosuccinate lyase C-terminus J159_00492 SM00346 helix_turn_helix isocitrate lyase regulation J159_00493 SM00090 RIO-like kinase J159_00496 SM01228 J159_00496 J159_00507 SM00729 Elongator protein 3, MiaB family, Radical SAM J159_00507 SM00876 Biotin and Thiamin Synthesis associated domain J159_00512 SM00369 Leucine-rich repeats, typical (most populated) subfamily J159_00532 SM00382 ATPases associated with a variety of cellular activities J159_00544 SM00267 diguanylate cyclase J159_00546 SM00642 Alpha-amylase domain J159_00547 SM00642 Alpha-amylase domain J159_00549 SM00642 Alpha-amylase domain J159_00551 SM00642 Alpha-amylase domain J159_00560 SM00822 J159_00560 J159_00562 SM00487 DEAD-like helicases superfamily J159_00562 SM00490 helicase superfamily c-terminal domain J159_00565 SM00326 Src homology 3 domains J159_00566 SM00861 Transketolase, pyrimidine binding domain J159_00568 SM00237 Domains in Na-Ca exchangers and integrin-beta4 J159_00572 SM00347 helix_turn_helix multiple antibiotic resistance protein J159_00591 SM00271 DnaJ molecular chaperone homology domain J159_00595 SM00046 Diacylglycerol kinase catalytic domain (presumed) J159_00599 SM00903 Flavin reductase like domain J159_00603 SM00100 Cyclic nucleotide-monophosphate binding domain J159_00603 SM00419 helix_turn_helix, cAMP Regulatory protein J159_00613 SM00387 Histidine kinase-like ATPases J159_00613 SM00388 His Kinase A (phosphoacceptor) domain J159_00613 SM00448 cheY-homologous receiver domain J159_00614 SM00052 Putative diguanylate phosphodiesterase J159_00614 SM00267 diguanylate cyclase J159_00614 SM00448 cheY-homologous receiver domain J159_00625 SM00563 Phosphate acyltransferases J159_00629 SM01209 J159_00629 J159_00629 SM01210 J159_00629 J159_00631 SM00798 AICARFT/IMPCHase bienzyme J159_00631 SM00851 MGS-like domain J159_00634 SM00195 Dual specificity phosphatase, catalytic domain J159_00638 SM00563 Phosphate acyltransferases J159_00643 SM00530 Helix-turn-helix XRE-family like proteins J159_00648 SM00878 Biotin carboxylase C-terminal domain J159_00654 SM00342 helix_turn_helix, arabinose operon control protein J159_00656 SM00234 in StAR and phosphatidylcholine transfer protein J159_00660 SM00883 Chaperonin 10 Kd subunit J159_00671 SM00944 Pro-kumamolisin, activation domain J159_00674 SM00867 YceI-like domain J159_00685 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. J159_00687 SM00345 helix_turn_helix gluconate operon transcriptional repressor J159_00687 SM00895 J159_00687 J159_00691 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_00691 SM00331 Sigma factor PP2C-like phosphatases J159_00699 SM00342 helix_turn_helix, arabinose operon control protein J159_00711 SM00267 diguanylate cyclase J159_00716 SM00062 Bacterial periplasmic substrate-binding proteins J159_00725 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain J159_00725 SM01232 J159_00725 J159_00727 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J159_00730 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J159_00730 SM00091 PAS domain J159_00730 SM00267 diguanylate cyclase J159_00731 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_00731 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_00731 SM01049 J159_00731 J159_00732 SM00637 J159_00732 J159_00734 SM00267 diguanylate cyclase J159_00740 SM00448 cheY-homologous receiver domain J159_00740 SM00850 LytTr DNA-binding domain J159_00756 SM00382 ATPases associated with a variety of cellular activities J159_00756 SM01086 C-terminal, D2-small domain, of ClpB protein J159_00762 SM00267 diguanylate cyclase J159_00763 SM01263 J159_00763 J159_00766 SM00564 beta-propeller repeat J159_00767 SM00062 Bacterial periplasmic substrate-binding proteins J159_00767 SM00248 ankyrin repeats J159_00770 SM00829 Enoylreductase J159_00772 SM00382 ATPases associated with a variety of cellular activities J159_00774 SM00268 Actin J159_00779 SM00710 Parallel beta-helix repeats J159_00782 SM00936 Penicillin-binding protein 5, C-terminal domain J159_00786 SM00729 Elongator protein 3, MiaB family, Radical SAM J159_00787 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J159_00787 SM00245 tail specific protease J159_00798 SM01350 J159_00798 J159_00800 SM00749 bacterial OsmY and nodulation domain J159_00801 SM00387 Histidine kinase-like ATPases J159_00801 SM00388 His Kinase A (phosphoacceptor) domain J159_00802 SM00448 cheY-homologous receiver domain J159_00803 SM00387 Histidine kinase-like ATPases J159_00803 SM00388 His Kinase A (phosphoacceptor) domain J159_00803 SM00448 cheY-homologous receiver domain J159_00809 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. J159_00814 SM00382 ATPases associated with a variety of cellular activities J159_00830 SM00345 helix_turn_helix gluconate operon transcriptional repressor J159_00830 SM00866 J159_00830 J159_00832 SM00354 helix_turn _helix lactose operon repressor J159_00846 SM00849 Metallo-beta-lactamase superfamily J159_00847 SM00342 helix_turn_helix, arabinose operon control protein J159_00849 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_00849 SM00387 Histidine kinase-like ATPases J159_00849 SM00388 His Kinase A (phosphoacceptor) domain J159_00850 SM00448 cheY-homologous receiver domain J159_00850 SM00862 Transcriptional regulatory protein, C terminal J159_00854 SM00829 Enoylreductase J159_00857 SM00345 helix_turn_helix gluconate operon transcriptional repressor J159_00861 SM00382 ATPases associated with a variety of cellular activities J159_00874 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J159_00880 SM00387 Histidine kinase-like ATPases J159_00880 SM00388 His Kinase A (phosphoacceptor) domain J159_00881 SM00448 cheY-homologous receiver domain J159_00881 SM00862 Transcriptional regulatory protein, C terminal J159_00905 SM00842 Cell division protein FtsA J159_00906 SM00864 Tubulin/FtsZ family, GTPase domain J159_00906 SM00865 Tubulin/FtsZ family, C-terminal domain J159_00910 SM00957 SecA DEAD-like domain J159_00910 SM00958 SecA preprotein cross-linking domain J159_00916 SM00829 Enoylreductase J159_00917 SM00944 Pro-kumamolisin, activation domain J159_00920 SM00642 Alpha-amylase domain J159_00927 SM00996 S-adenosyl-L-homocysteine hydrolase J159_00927 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain J159_00952 SM00382 ATPases associated with a variety of cellular activities J159_00956 SM00382 ATPases associated with a variety of cellular activities J159_00958 SM00448 cheY-homologous receiver domain J159_00958 SM00862 Transcriptional regulatory protein, C terminal J159_00959 SM00387 Histidine kinase-like ATPases J159_00959 SM00388 His Kinase A (phosphoacceptor) domain J159_00969 SM00382 ATPases associated with a variety of cellular activities J159_00971 SM00382 ATPases associated with a variety of cellular activities J159_00984 SM00382 ATPases associated with a variety of cellular activities J159_00987 SM00650 Ribosomal RNA adenine dimethylases J159_00992 SM00108 Bulb-type mannose-specific lectin J159_01001 SM00345 helix_turn_helix gluconate operon transcriptional repressor J159_01001 SM00895 J159_01001 J159_01008 SM00347 helix_turn_helix multiple antibiotic resistance protein J159_01020 SM00448 cheY-homologous receiver domain J159_01021 SM00387 Histidine kinase-like ATPases J159_01021 SM00388 His Kinase A (phosphoacceptor) domain J159_01021 SM00448 cheY-homologous receiver domain J159_01022 SM00421 helix_turn_helix, Lux Regulon J159_01035 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs J159_01035 SM00475 5'-3' exonuclease J159_01041 SM01002 Alanine dehydrogenase/PNT, C-terminal domain J159_01041 SM01003 Alanine dehydrogenase/PNT, N-terminal domain J159_01065 SM00852 Probable molybdopterin binding domain J159_01066 SM00028 Tetratricopeptide repeats J159_01067 SM00937 J159_01067 J159_01069 SM00028 Tetratricopeptide repeats J159_01073 SM01400 J159_01073 J159_01083 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. J159_01083 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. J159_01084 SM00649 Ribosomal protein L11/L12 J159_01090 SM00663 RNA polymerase I subunit A N-terminus J159_01093 SM00838 Elongation factor G C-terminus J159_01093 SM00889 Elongation factor G, domain IV J159_01095 SM01403 J159_01095 J159_01099 SM01382 J159_01099 J159_01099 SM01383 J159_01099 J159_01102 SM00322 K homology RNA-binding domain J159_01106 SM01374 J159_01106 J159_01107 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. J159_01119 SM00363 S4 RNA-binding domain J159_01119 SM01390 J159_01119 J159_01120 SM00662 RNA polymerases D J159_01128 SM00838 Elongation factor G C-terminus J159_01134 SM00829 Enoylreductase J159_01143 SM00382 ATPases associated with a variety of cellular activities J159_01145 SM00829 Enoylreductase J159_01150 SM00855 Phosphoglycerate mutase family J159_01161 SM00014 Acid phosphatase homologues J159_01165 SM00091 PAS domain J159_01165 SM00387 Histidine kinase-like ATPases J159_01165 SM00388 His Kinase A (phosphoacceptor) domain J159_01166 SM00448 cheY-homologous receiver domain J159_01166 SM00862 Transcriptional regulatory protein, C terminal J159_01170 SM01329 J159_01170 J159_01204 SM00387 Histidine kinase-like ATPases J159_01205 SM00091 PAS domain J159_01209 SM00382 ATPases associated with a variety of cellular activities J159_01209 SM00994 ClpX C4-type zinc finger J159_01209 SM01086 C-terminal, D2-small domain, of ClpB protein J159_01210 SM00382 ATPases associated with a variety of cellular activities J159_01210 SM00464 Found in ATP-dependent protease La (LON) J159_01211 SM00411 bacterial (prokaryotic) histone like domain J159_01217 SM00257 Lysin motif J159_01218 SM00849 Metallo-beta-lactamase superfamily J159_01221 SM00479 J159_01221 J159_01222 SM00331 Sigma factor PP2C-like phosphatases J159_01222 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain J159_01227 SM00849 Metallo-beta-lactamase superfamily J159_01228 SM00729 Elongator protein 3, MiaB family, Radical SAM J159_01241 SM00382 ATPases associated with a variety of cellular activities J159_01243 SM00493 J159_01243 J159_01246 SM00460 Transglutaminase/protease-like homologues J159_01248 SM00382 ATPases associated with a variety of cellular activities J159_01257 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. J159_01258 SM00822 J159_01258 J159_01260 SM00825 Beta-ketoacyl synthase J159_01267 SM00382 ATPases associated with a variety of cellular activities J159_01276 SM01359 J159_01276 J159_01276 SM01360 J159_01276 J159_01283 SM00271 DnaJ molecular chaperone homology domain J159_01285 SM00448 cheY-homologous receiver domain J159_01287 SM00244 prohibitin homologues J159_01288 SM00244 prohibitin homologues J159_01289 SM01321 J159_01289 J159_01290 SM00788 Adenylosuccinate synthetase J159_01293 SM00822 J159_01293 J159_01303 SM00220 Serine/Threonine protein kinases, catalytic domain J159_01307 SM00855 Phosphoglycerate mutase family J159_01318 SM00052 Putative diguanylate phosphodiesterase J159_01319 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J159_01321 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J159_01322 SM01092 CO dehydrogenase flavoprotein C-terminal domain J159_01325 SM00974 J159_01325 J159_01329 SM00966 SpoVT / AbrB like domain J159_01333 SM00481 DNA polymerase alpha chain like domain J159_01335 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J159_01342 SM00091 PAS domain J159_01342 SM00342 helix_turn_helix, arabinose operon control protein J159_01347 SM01060 J159_01347 J159_01359 SM00448 cheY-homologous receiver domain J159_01359 SM00862 Transcriptional regulatory protein, C terminal J159_01360 SM00387 Histidine kinase-like ATPases J159_01360 SM00388 His Kinase A (phosphoacceptor) domain J159_01367 SM00421 helix_turn_helix, Lux Regulon J159_01367 SM00448 cheY-homologous receiver domain J159_01370 SM00478 endonuclease III J159_01374 SM00244 prohibitin homologues J159_01392 SM00904 Riboflavin kinase J159_01401 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J159_01402 SM00382 ATPases associated with a variety of cellular activities J159_01404 SM00862 Transcriptional regulatory protein, C terminal J159_01405 SM00342 helix_turn_helix, arabinose operon control protein J159_01412 SM00387 Histidine kinase-like ATPases J159_01412 SM00388 His Kinase A (phosphoacceptor) domain J159_01413 SM00387 Histidine kinase-like ATPases J159_01413 SM00388 His Kinase A (phosphoacceptor) domain J159_01413 SM00448 cheY-homologous receiver domain J159_01418 SM00387 Histidine kinase-like ATPases J159_01418 SM00388 His Kinase A (phosphoacceptor) domain J159_01418 SM00448 cheY-homologous receiver domain J159_01420 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J159_01420 SM00387 Histidine kinase-like ATPases J159_01420 SM00388 His Kinase A (phosphoacceptor) domain J159_01420 SM00448 cheY-homologous receiver domain J159_01421 SM00091 PAS domain J159_01421 SM00387 Histidine kinase-like ATPases J159_01421 SM00388 His Kinase A (phosphoacceptor) domain J159_01422 SM00448 cheY-homologous receiver domain J159_01424 SM00813 Alpha-L-arabinofuranosidase C-terminus J159_01427 SM00382 ATPases associated with a variety of cellular activities J159_01427 SM00962 SRP54-type protein, GTPase domain J159_01427 SM00963 SRP54-type protein, helical bundle domain J159_01441 SM00533 DNA-binding domain of DNA mismatch repair MUTS family J159_01441 SM00534 ATPase domain of DNA mismatch repair MUTS family J159_01446 SM00812 Alpha-L-fucosidase J159_01451 SM00530 Helix-turn-helix XRE-family like proteins J159_01461 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J159_01462 SM00838 Elongation factor G C-terminus J159_01465 SM00358 Double-stranded RNA binding motif J159_01465 SM00535 Ribonuclease III family J159_01468 SM00448 cheY-homologous receiver domain J159_01470 SM01118 J159_01470 J159_01477 SM00357 Cold shock protein domain J159_01480 SM00487 DEAD-like helicases superfamily J159_01480 SM00490 helicase superfamily c-terminal domain J159_01486 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J159_01486 SM00267 diguanylate cyclase J159_01490 SM00869 Autotransporter beta-domain J159_01491 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J159_01492 SM00671 Sel1-like repeats. J159_01492 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. J159_01531 SM00382 ATPases associated with a variety of cellular activities J159_01548 SM00481 DNA polymerase alpha chain like domain J159_01556 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J159_01562 SM00267 diguanylate cyclase J159_01567 SM00972 Spore Coat Protein U domain J159_01570 SM00972 Spore Coat Protein U domain J159_01572 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J159_01576 SM01172 J159_01576 J159_01577 SM00710 Parallel beta-helix repeats J159_01577 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses J159_01584 SM00434 DNA Topoisomerase IV J159_01585 SM00342 helix_turn_helix, arabinose operon control protein J159_01586 SM00347 helix_turn_helix multiple antibiotic resistance protein J159_01591 SM01217 J159_01591 J159_01592 SM00631 J159_01592 J159_01598 SM00347 helix_turn_helix multiple antibiotic resistance protein J159_01602 SM00382 ATPases associated with a variety of cellular activities J159_01605 SM00947 Carbonic anhydrase J159_01608 SM00357 Cold shock protein domain J159_01631 SM00267 diguanylate cyclase J159_01633 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J159_01633 SM00267 diguanylate cyclase J159_01669 SM00271 DnaJ molecular chaperone homology domain J159_01678 SM00382 ATPases associated with a variety of cellular activities J159_01683 SM00861 Transketolase, pyrimidine binding domain J159_01685 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. J159_01689 SM00116 Domain in cystathionine beta-synthase and other proteins. J159_01689 SM01091 Transporter associated domain J159_01695 SM00382 ATPases associated with a variety of cellular activities J159_01696 SM00345 helix_turn_helix gluconate operon transcriptional repressor J159_01700 SM00984 UDP binding domain J159_01704 SM00354 helix_turn _helix lactose operon repressor J159_01708 SM01018 B12 binding domain J159_01710 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor J159_01714 SM00316 Ribosomal protein S1-like RNA-binding domain J159_01714 SM00357 Cold shock protein domain J159_01714 SM00955 J159_01714 J159_01716 SM00967 RNA 2'-O ribose methyltransferase substrate binding J159_01717 SM00267 diguanylate cyclase J159_01718 SM00479 J159_01718 J159_01721 SM00382 ATPases associated with a variety of cellular activities J159_01728 SM00947 Carbonic anhydrase J159_01730 SM00478 endonuclease III J159_01735 SM00450 Rhodanese Homology Domain J159_01737 SM00644 J159_01737 J159_01741 SM00382 ATPases associated with a variety of cellular activities J159_01742 SM00981 J159_01742 J159_01747 SM00479 J159_01747 J159_01752 SM00947 Carbonic anhydrase J159_01761 SM00421 helix_turn_helix, Lux Regulon J159_01761 SM00448 cheY-homologous receiver domain J159_01773 SM00968 SMC proteins Flexible Hinge Domain J159_01774 SM00771 ZipA, C-terminal domain (FtsZ-binding) J159_01777 SM00292 breast cancer carboxy-terminal domain J159_01777 SM00532 Ligase N family J159_01781 SM00434 DNA Topoisomerase IV J159_01782 SM00564 beta-propeller repeat J159_01789 SM00345 helix_turn_helix gluconate operon transcriptional repressor J159_01789 SM00866 J159_01789 J159_01794 SM00240 Forkhead associated domain J159_01798 SM00830 Chorismate mutase type II J159_01807 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_01807 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_01809 SM00347 helix_turn_helix multiple antibiotic resistance protein J159_01810 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J159_01810 SM00091 PAS domain J159_01810 SM00387 Histidine kinase-like ATPases J159_01810 SM00388 His Kinase A (phosphoacceptor) domain J159_01810 SM00448 cheY-homologous receiver domain J159_01811 SM00448 cheY-homologous receiver domain J159_01812 SM00382 ATPases associated with a variety of cellular activities J159_01813 SM00091 PAS domain J159_01813 SM00387 Histidine kinase-like ATPases J159_01813 SM00388 His Kinase A (phosphoacceptor) domain J159_01813 SM00448 cheY-homologous receiver domain J159_01844 SM00729 Elongator protein 3, MiaB family, Radical SAM J159_01846 SM00382 ATPases associated with a variety of cellular activities J159_01851 SM00116 Domain in cystathionine beta-synthase and other proteins. J159_01851 SM01091 Transporter associated domain J159_01856 SM00387 Histidine kinase-like ATPases J159_01856 SM00433 TopoisomeraseII J159_01861 SM01192 J159_01861 J159_01861 SM01193 J159_01861 J159_01866 SM00463 Small MutS-related domain J159_01870 SM00257 Lysin motif J159_01873 SM01103 J159_01873 J159_01875 SM00382 ATPases associated with a variety of cellular activities J159_01883 SM00382 ATPases associated with a variety of cellular activities J159_01885 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain J159_01888 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J159_01888 SM00091 PAS domain J159_01888 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_01898 SM00670 Large family of predicted nucleotide-binding domains J159_01902 SM01130 J159_01902 J159_01907 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J159_01916 SM00758 J159_01916 J159_01923 SM00646 J159_01923 J159_01939 SM00052 Putative diguanylate phosphodiesterase J159_01939 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J159_01939 SM00267 diguanylate cyclase J159_01941 SM00448 cheY-homologous receiver domain J159_01942 SM00387 Histidine kinase-like ATPases J159_01944 SM00014 Acid phosphatase homologues J159_01959 SM00912 haemagglutination activity domain J159_01969 SM00100 Cyclic nucleotide-monophosphate binding domain J159_01969 SM00419 helix_turn_helix, cAMP Regulatory protein J159_01984 SM01007 Class II Aldolase and Adducin N-terminal domain J159_01993 SM00841 Elongation factor P, C-terminal J159_01993 SM01185 J159_01993 J159_01994 SM00822 J159_01994 J159_01998 SM00899 J159_01998 J159_02005 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain J159_02007 SM00851 MGS-like domain J159_02007 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J159_02018 SM00850 LytTr DNA-binding domain J159_02019 SM00937 J159_02019 J159_02021 SM00448 cheY-homologous receiver domain J159_02021 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J159_02022 SM00073 Histidine Phosphotransfer domain J159_02022 SM00387 Histidine kinase-like ATPases J159_02022 SM00388 His Kinase A (phosphoacceptor) domain J159_02022 SM00448 cheY-homologous receiver domain J159_02027 SM00966 SpoVT / AbrB like domain J159_02031 SM00052 Putative diguanylate phosphodiesterase J159_02031 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J159_02031 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J159_02031 SM00091 PAS domain J159_02031 SM00267 diguanylate cyclase J159_02032 SM00448 cheY-homologous receiver domain J159_02034 SM00138 Methyltransferase, chemotaxis proteins J159_02035 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_02035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_02036 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_02036 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_02037 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_02037 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_02038 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_02038 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_02039 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_02039 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_02040 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_02040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_02041 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_02043 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_02043 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_02044 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_02044 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_02044 SM01049 J159_02044 J159_02046 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_02046 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_02047 SM00073 Histidine Phosphotransfer domain J159_02047 SM00260 Two component signalling adaptor domain J159_02047 SM00387 Histidine kinase-like ATPases J159_02047 SM01231 J159_02047 J159_02048 SM00448 cheY-homologous receiver domain J159_02050 SM00260 Two component signalling adaptor domain J159_02056 SM00220 Serine/Threonine protein kinases, catalytic domain J159_02070 SM00530 Helix-turn-helix XRE-family like proteins J159_02075 SM00073 Histidine Phosphotransfer domain J159_02075 SM00260 Two component signalling adaptor domain J159_02075 SM00387 Histidine kinase-like ATPases J159_02075 SM01231 J159_02075 J159_02077 SM00448 cheY-homologous receiver domain J159_02080 SM00382 ATPases associated with a variety of cellular activities J159_02080 SM00962 SRP54-type protein, GTPase domain J159_02083 SM00052 Putative diguanylate phosphodiesterase J159_02083 SM00267 diguanylate cyclase J159_02084 SM00267 diguanylate cyclase J159_02085 SM00267 diguanylate cyclase J159_02096 SM00382 ATPases associated with a variety of cellular activities J159_02107 SM00822 J159_02107 J159_02112 SM00382 ATPases associated with a variety of cellular activities J159_02113 SM00448 cheY-homologous receiver domain J159_02115 SM00421 helix_turn_helix, Lux Regulon J159_02115 SM00448 cheY-homologous receiver domain J159_02123 SM00047 Lysozyme subfamily 2 J159_02132 SM00260 Two component signalling adaptor domain J159_02132 SM00448 cheY-homologous receiver domain J159_02133 SM00858 J159_02133 J159_02136 SM00387 Histidine kinase-like ATPases J159_02137 SM00052 Putative diguanylate phosphodiesterase J159_02137 SM00267 diguanylate cyclase J159_02137 SM00448 cheY-homologous receiver domain J159_02138 SM00091 PAS domain J159_02138 SM00387 Histidine kinase-like ATPases J159_02139 SM00052 Putative diguanylate phosphodiesterase J159_02139 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J159_02139 SM00091 PAS domain J159_02139 SM00267 diguanylate cyclase J159_02141 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_02146 SM00382 ATPases associated with a variety of cellular activities J159_02146 SM01086 C-terminal, D2-small domain, of ClpB protein J159_02147 SM00316 Ribosomal protein S1-like RNA-binding domain J159_02151 SM00382 ATPases associated with a variety of cellular activities J159_02151 SM00843 J159_02151 J159_02155 SM00382 ATPases associated with a variety of cellular activities J159_02162 SM00562 J159_02162 J159_02164 SM00028 Tetratricopeptide repeats J159_02167 SM00564 beta-propeller repeat J159_02168 SM00382 ATPases associated with a variety of cellular activities J159_02169 SM00852 Probable molybdopterin binding domain J159_02170 SM00450 Rhodanese Homology Domain J159_02179 SM00852 Probable molybdopterin binding domain J159_02184 SM00529 Helix-turn-helix diphteria tox regulatory element J159_02186 SM00479 J159_02186 J159_02200 SM00316 Ribosomal protein S1-like RNA-binding domain J159_02200 SM00732 Likely ribonuclease with RNase H fold. J159_02201 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J159_02201 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J159_02201 SM00091 PAS domain J159_02201 SM00387 Histidine kinase-like ATPases J159_02201 SM00388 His Kinase A (phosphoacceptor) domain J159_02201 SM00448 cheY-homologous receiver domain J159_02202 SM00448 cheY-homologous receiver domain J159_02219 SM00382 ATPases associated with a variety of cellular activities J159_02230 SM00382 ATPases associated with a variety of cellular activities J159_02232 SM00849 Metallo-beta-lactamase superfamily J159_02235 SM00382 ATPases associated with a variety of cellular activities J159_02238 SM00226 Low molecular weight phosphatase family J159_02240 SM00278 Helix-hairpin-helix DNA-binding motif class 1 J159_02240 SM00465 GIY-YIG type nucleases (URI domain) J159_02246 SM00823 Phosphopantetheine attachment site J159_02253 SM00984 UDP binding domain J159_02257 SM00450 Rhodanese Homology Domain J159_02258 SM00421 helix_turn_helix, Lux Regulon J159_02258 SM00448 cheY-homologous receiver domain J159_02259 SM00316 Ribosomal protein S1-like RNA-binding domain J159_02260 SM00363 S4 RNA-binding domain J159_02268 SM01034 Sensors of blue-light using FAD J159_02289 SM00448 cheY-homologous receiver domain J159_02289 SM00850 LytTr DNA-binding domain J159_02292 SM00869 Autotransporter beta-domain J159_02296 SM00387 Histidine kinase-like ATPases J159_02296 SM00388 His Kinase A (phosphoacceptor) domain J159_02297 SM00421 helix_turn_helix, Lux Regulon J159_02297 SM00448 cheY-homologous receiver domain J159_02298 SM00869 Autotransporter beta-domain J159_02299 SM00052 Putative diguanylate phosphodiesterase J159_02304 SM01012 J159_02304 J159_02313 SM00342 helix_turn_helix, arabinose operon control protein J159_02314 SM00387 Histidine kinase-like ATPases J159_02315 SM00421 helix_turn_helix, Lux Regulon J159_02315 SM00448 cheY-homologous receiver domain J159_02316 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_02323 SM00530 Helix-turn-helix XRE-family like proteins J159_02338 SM00966 SpoVT / AbrB like domain J159_02343 SM00965 Secretin and TonB N terminus short domain J159_02348 SM00736 Dystroglycan-type cadherin-like domains. J159_02353 SM00382 ATPases associated with a variety of cellular activities J159_02363 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain J159_02363 SM00437 Bacterial DNA topoisomerase I DNA-binding domain J159_02363 SM00493 J159_02363 J159_02388 SM00342 helix_turn_helix, arabinose operon control protein J159_02397 SM00487 DEAD-like helicases superfamily J159_02448 SM00116 Domain in cystathionine beta-synthase and other proteins. J159_02448 SM01240 J159_02448 J159_02453 SM00822 J159_02453 J159_02455 SM00028 Tetratricopeptide repeats J159_02457 SM00411 bacterial (prokaryotic) histone like domain J159_02458 SM00316 Ribosomal protein S1-like RNA-binding domain J159_02474 SM00354 helix_turn _helix lactose operon repressor J159_02479 SM00363 S4 RNA-binding domain J159_02484 SM00382 ATPases associated with a variety of cellular activities J159_02494 SM00357 Cold shock protein domain J159_02495 SM00382 ATPases associated with a variety of cellular activities J159_02496 SM00382 ATPases associated with a variety of cellular activities J159_02502 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J159_02504 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase J159_02507 SM00859 Semialdehyde dehydrogenase, NAD binding domain J159_02515 SM00840 J159_02515 J159_02519 SM01234 J159_02519 J159_02527 SM00849 Metallo-beta-lactamase superfamily J159_02532 SM00656 J159_02532 J159_02540 SM00841 Elongation factor P, C-terminal J159_02540 SM01185 J159_02540 J159_02542 SM00052 Putative diguanylate phosphodiesterase J159_02542 SM00267 diguanylate cyclase J159_02542 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_02549 SM00382 ATPases associated with a variety of cellular activities J159_02550 SM00487 DEAD-like helicases superfamily J159_02550 SM00490 helicase superfamily c-terminal domain J159_02555 SM00357 Cold shock protein domain J159_02556 SM01322 J159_02556 J159_02558 SM00052 Putative diguanylate phosphodiesterase J159_02558 SM00267 diguanylate cyclase J159_02561 SM00822 J159_02561 J159_02565 SM00853 MutL C terminal dimerisation domain J159_02565 SM01340 J159_02565 J159_02566 SM00646 J159_02566 J159_02573 SM00474 3'-5' exonuclease J159_02577 SM00528 Domain in histone-like proteins of HNS family J159_02595 SM00857 Resolvase, N terminal domain J159_02610 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J159_02610 SM00267 diguanylate cyclase J159_02611 SM00260 Two component signalling adaptor domain J159_02612 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_02612 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_02614 SM00487 DEAD-like helicases superfamily J159_02614 SM00490 helicase superfamily c-terminal domain J159_02625 SM00729 Elongator protein 3, MiaB family, Radical SAM J159_02630 SM00116 Domain in cystathionine beta-synthase and other proteins. J159_02630 SM01091 Transporter associated domain J159_02636 SM00382 ATPases associated with a variety of cellular activities J159_02642 SM01230 J159_02642 J159_02644 SM01230 J159_02644 J159_02646 SM00267 diguanylate cyclase J159_02646 SM00448 cheY-homologous receiver domain J159_02656 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J159_02656 SM00091 PAS domain J159_02656 SM00387 Histidine kinase-like ATPases J159_02656 SM00388 His Kinase A (phosphoacceptor) domain J159_02656 SM00448 cheY-homologous receiver domain J159_02656 SM01079 J159_02656 J159_02657 SM00448 cheY-homologous receiver domain J159_02657 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J159_02663 SM00354 helix_turn _helix lactose operon repressor J159_02674 SM01323 J159_02674 J159_02677 SM00344 helix_turn_helix ASNC type J159_02692 SM00387 Histidine kinase-like ATPases J159_02701 SM00944 Pro-kumamolisin, activation domain J159_02712 SM01130 J159_02712 J159_02717 SM00342 helix_turn_helix, arabinose operon control protein J159_02718 SM00382 ATPases associated with a variety of cellular activities J159_02718 SM00962 SRP54-type protein, GTPase domain J159_02718 SM00963 SRP54-type protein, helical bundle domain J159_02719 SM00478 endonuclease III J159_02721 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J159_02721 SM00091 PAS domain J159_02721 SM00387 Histidine kinase-like ATPases J159_02721 SM00388 His Kinase A (phosphoacceptor) domain J159_02721 SM00448 cheY-homologous receiver domain J159_02724 SM00465 GIY-YIG type nucleases (URI domain) J159_02730 SM00507 HNH nucleases J159_02731 SM00861 Transketolase, pyrimidine binding domain J159_02736 SM00849 Metallo-beta-lactamase superfamily J159_02753 SM00422 helix_turn_helix, mercury resistance J159_02754 SM00411 bacterial (prokaryotic) histone like domain J159_02755 SM00873 B3/4 domain J159_02755 SM00874 tRNA synthetase B5 domain J159_02755 SM00896 Ferredoxin-fold anticodon binding domain J159_02761 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain J159_02762 SM00354 helix_turn _helix lactose operon repressor J159_02763 SM00642 Alpha-amylase domain J159_02770 SM00642 Alpha-amylase domain J159_02781 SM00382 ATPases associated with a variety of cellular activities J159_02793 SM00487 DEAD-like helicases superfamily J159_02793 SM00490 helicase superfamily c-terminal domain J159_02842 SM01001 AIR carboxylase J159_02846 SM00316 Ribosomal protein S1-like RNA-binding domain J159_02846 SM00322 K homology RNA-binding domain J159_02847 SM01387 J159_02847 J159_02851 SM00316 Ribosomal protein S1-like RNA-binding domain J159_02851 SM00322 K homology RNA-binding domain J159_02861 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J159_02862 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J159_02871 SM00822 J159_02871 J159_02874 SM00052 Putative diguanylate phosphodiesterase J159_02874 SM00267 diguanylate cyclase J159_02874 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_02888 SM00859 Semialdehyde dehydrogenase, NAD binding domain J159_02894 SM00257 Lysin motif J159_02900 SM00729 Elongator protein 3, MiaB family, Radical SAM J159_02913 SM01160 J159_02913 J159_02924 SM00098 Alkaline phosphatase homologues J159_02925 SM00977 TilS substrate C-terminal domain J159_02928 SM01351 J159_02928 J159_02935 SM00316 Ribosomal protein S1-like RNA-binding domain J159_02961 SM00382 ATPases associated with a variety of cellular activities J159_02968 SM00448 cheY-homologous receiver domain J159_02968 SM00862 Transcriptional regulatory protein, C terminal J159_02969 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_02969 SM00387 Histidine kinase-like ATPases J159_02969 SM00388 His Kinase A (phosphoacceptor) domain J159_02975 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J159_02975 SM00267 diguanylate cyclase J159_02976 SM00363 S4 RNA-binding domain J159_02977 SM00052 Putative diguanylate phosphodiesterase J159_02977 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J159_02977 SM00091 PAS domain J159_02977 SM00267 diguanylate cyclase J159_02978 SM00487 DEAD-like helicases superfamily J159_02978 SM00490 helicase superfamily c-terminal domain J159_02987 SM00342 helix_turn_helix, arabinose operon control protein J159_02987 SM00478 endonuclease III J159_02987 SM01009 AlkA N-terminal domain J159_02991 SM00829 Enoylreductase J159_03005 SM00342 helix_turn_helix, arabinose operon control protein J159_03019 SM00645 Papain family cysteine protease J159_03020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_03020 SM00387 Histidine kinase-like ATPases J159_03020 SM00388 His Kinase A (phosphoacceptor) domain J159_03021 SM00448 cheY-homologous receiver domain J159_03021 SM00862 Transcriptional regulatory protein, C terminal J159_03024 SM00487 DEAD-like helicases superfamily J159_03024 SM00490 helicase superfamily c-terminal domain J159_03024 SM00982 J159_03024 J159_03024 SM01058 CarD-like/TRCF domain J159_03031 SM00073 Histidine Phosphotransfer domain J159_03031 SM00260 Two component signalling adaptor domain J159_03031 SM00387 Histidine kinase-like ATPases J159_03031 SM01231 J159_03031 J159_03032 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_03032 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_03033 SM00260 Two component signalling adaptor domain J159_03034 SM00052 Putative diguanylate phosphodiesterase J159_03034 SM00448 cheY-homologous receiver domain J159_03035 SM00138 Methyltransferase, chemotaxis proteins J159_03036 SM00448 cheY-homologous receiver domain J159_03037 SM00155 Phospholipase D. Active site motifs. J159_03040 SM00855 Phosphoglycerate mutase family J159_03050 SM00248 ankyrin repeats J159_03060 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J159_03061 SM01092 CO dehydrogenase flavoprotein C-terminal domain J159_03063 SM00829 Enoylreductase J159_03064 SM00267 diguanylate cyclase J159_03077 SM00732 Likely ribonuclease with RNase H fold. J159_03084 SM00382 ATPases associated with a variety of cellular activities J159_03087 SM00411 bacterial (prokaryotic) histone like domain J159_03093 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain J159_03096 SM00382 ATPases associated with a variety of cellular activities J159_03102 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. J159_03103 SM00671 Sel1-like repeats. J159_03109 SM00054 EF-hand, calcium binding motif J159_03127 SM00116 Domain in cystathionine beta-synthase and other proteins. J159_03131 SM00382 ATPases associated with a variety of cellular activities J159_03140 SM00924 MgtE intracellular N domain J159_03146 SM00656 J159_03146 J159_03148 SM00421 helix_turn_helix, Lux Regulon J159_03154 SM00849 Metallo-beta-lactamase superfamily J159_03156 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. J159_03160 SM00422 helix_turn_helix, mercury resistance J159_03187 SM00342 helix_turn_helix, arabinose operon control protein J159_03189 SM00387 Histidine kinase-like ATPases J159_03189 SM00388 His Kinase A (phosphoacceptor) domain J159_03189 SM00448 cheY-homologous receiver domain J159_03190 SM00387 Histidine kinase-like ATPases J159_03190 SM00388 His Kinase A (phosphoacceptor) domain J159_03190 SM00448 cheY-homologous receiver domain J159_03192 SM00387 Histidine kinase-like ATPases J159_03192 SM00388 His Kinase A (phosphoacceptor) domain J159_03192 SM00448 cheY-homologous receiver domain J159_03193 SM00867 YceI-like domain J159_03195 SM00867 YceI-like domain J159_03207 SM00116 Domain in cystathionine beta-synthase and other proteins. J159_03213 SM00028 Tetratricopeptide repeats J159_03233 SM00812 Alpha-L-fucosidase J159_03234 SM00636 J159_03234 J159_03237 SM00758 J159_03237 J159_03237 SM01217 J159_03237 J159_03243 SM01149 J159_03243 J159_03250 SM00369 Leucine-rich repeats, typical (most populated) subfamily J159_03254 SM00260 Two component signalling adaptor domain J159_03256 SM00073 Histidine Phosphotransfer domain J159_03256 SM00260 Two component signalling adaptor domain J159_03256 SM00387 Histidine kinase-like ATPases J159_03256 SM00448 cheY-homologous receiver domain J159_03256 SM01231 J159_03256 J159_03257 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_03258 SM00260 Two component signalling adaptor domain J159_03259 SM00448 cheY-homologous receiver domain J159_03260 SM00448 cheY-homologous receiver domain J159_03265 SM00491 J159_03265 J159_03270 SM00954 Region found in RelA / SpoT proteins J159_03279 SM00382 ATPases associated with a variety of cellular activities J159_03279 SM00487 DEAD-like helicases superfamily J159_03279 SM00490 helicase superfamily c-terminal domain J159_03279 SM00847 Helicase associated domain (HA2) Add an annotation J159_03281 SM00341 Helicase and RNase D C-terminal J159_03281 SM00487 DEAD-like helicases superfamily J159_03281 SM00490 helicase superfamily c-terminal domain J159_03281 SM00956 J159_03281 J159_03283 SM00448 cheY-homologous receiver domain J159_03288 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_03288 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_03291 SM00448 cheY-homologous receiver domain J159_03292 SM00091 PAS domain J159_03292 SM00911 HWE histidine kinase J159_03303 SM00382 ATPases associated with a variety of cellular activities J159_03306 SM00278 Helix-hairpin-helix DNA-binding motif class 1 J159_03313 SM00834 Putative regulatory protein J159_03322 SM00382 ATPases associated with a variety of cellular activities J159_03342 SM00855 Phosphoglycerate mutase family J159_03354 SM00382 ATPases associated with a variety of cellular activities J159_03354 SM01086 C-terminal, D2-small domain, of ClpB protein J159_03355 SM00382 ATPases associated with a variety of cellular activities J159_03357 SM00062 Bacterial periplasmic substrate-binding proteins J159_03372 SM00564 beta-propeller repeat J159_03373 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_03394 SM01126 J159_03394 J159_03396 SM00881 CoA binding domain J159_03398 SM00387 Histidine kinase-like ATPases J159_03398 SM00388 His Kinase A (phosphoacceptor) domain J159_03399 SM00382 ATPases associated with a variety of cellular activities J159_03399 SM00448 cheY-homologous receiver domain J159_03413 SM00387 Histidine kinase-like ATPases J159_03413 SM00388 His Kinase A (phosphoacceptor) domain J159_03414 SM00448 cheY-homologous receiver domain J159_03414 SM00862 Transcriptional regulatory protein, C terminal J159_03417 SM00642 Alpha-amylase domain J159_03418 SM00528 Domain in histone-like proteins of HNS family J159_03420 SM00318 Staphylococcal nuclease homologues J159_03435 SM00387 Histidine kinase-like ATPases J159_03435 SM00388 His Kinase A (phosphoacceptor) domain J159_03436 SM00448 cheY-homologous receiver domain J159_03438 SM00646 J159_03438 J159_03447 SM00530 Helix-turn-helix XRE-family like proteins J159_03451 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J159_03451 SM00387 Histidine kinase-like ATPases J159_03455 SM00255 Toll - interleukin 1 - resistance J159_03459 SM00869 Autotransporter beta-domain J159_03469 SM00354 helix_turn _helix lactose operon repressor J159_03475 SM00967 RNA 2'-O ribose methyltransferase substrate binding J159_03496 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J159_03496 SM00387 Histidine kinase-like ATPases J159_03502 SM00506 Appr-1"-p processing enzyme J159_03511 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J159_03516 SM00849 Metallo-beta-lactamase superfamily J159_03519 SM00382 ATPases associated with a variety of cellular activities J159_03531 SM00861 Transketolase, pyrimidine binding domain J159_03534 SM00028 Tetratricopeptide repeats J159_03534 SM00327 von Willebrand factor (vWF) type A domain J159_03535 SM00327 von Willebrand factor (vWF) type A domain J159_03538 SM00382 ATPases associated with a variety of cellular activities J159_03540 SM00965 Secretin and TonB N terminus short domain J159_03551 SM00487 DEAD-like helicases superfamily J159_03551 SM00490 helicase superfamily c-terminal domain J159_03553 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J159_03553 SM00954 Region found in RelA / SpoT proteins J159_03554 SM01409 J159_03554 J159_03555 SM00072 Guanylate kinase homologues. J159_03560 SM00729 Elongator protein 3, MiaB family, Radical SAM J159_03565 SM01011 Aminopeptidase P, N-terminal domain J159_03580 SM00028 Tetratricopeptide repeats J159_03580 SM00382 ATPases associated with a variety of cellular activities J159_03580 SM00421 helix_turn_helix, Lux Regulon J159_03594 SM00464 Found in ATP-dependent protease La (LON) J159_03604 SM00342 helix_turn_helix, arabinose operon control protein J159_03605 SM00862 Transcriptional regulatory protein, C terminal J159_03609 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_03615 SM00917 LeuA allosteric (dimerisation) domain J159_03616 SM01329 J159_03616 J159_03620 SM00267 diguanylate cyclase J159_03630 SM00919 Malic enzyme, NAD binding domain J159_03630 SM01274 J159_03630 J159_03633 SM00387 Histidine kinase-like ATPases J159_03633 SM00388 His Kinase A (phosphoacceptor) domain J159_03633 SM00448 cheY-homologous receiver domain J159_03641 SM00421 helix_turn_helix, Lux Regulon J159_03641 SM00448 cheY-homologous receiver domain J159_03643 SM00387 Histidine kinase-like ATPases J159_03643 SM00388 His Kinase A (phosphoacceptor) domain J159_03644 SM00448 cheY-homologous receiver domain J159_03644 SM00862 Transcriptional regulatory protein, C terminal J159_03648 SM00822 J159_03648 J159_03649 SM00354 helix_turn _helix lactose operon repressor J159_03652 SM00642 Alpha-amylase domain J159_03654 SM01154 J159_03654 J159_03661 SM00450 Rhodanese Homology Domain J159_03674 SM00028 Tetratricopeptide repeats J159_03689 SM00345 helix_turn_helix gluconate operon transcriptional repressor J159_03689 SM00866 J159_03689 J159_03701 SM00382 ATPases associated with a variety of cellular activities J159_03706 SM01211 J159_03706 J159_03719 SM00656 J159_03719 J159_03725 SM00528 Domain in histone-like proteins of HNS family J159_03728 SM00382 ATPases associated with a variety of cellular activities J159_03734 SM00882 Coenzyme A transferase J159_03735 SM00882 Coenzyme A transferase J159_03738 SM00984 UDP binding domain J159_03743 SM00893 Electron transfer flavoprotein domain J159_03744 SM00893 Electron transfer flavoprotein domain J159_03758 SM00382 ATPases associated with a variety of cellular activities J159_03761 SM00116 Domain in cystathionine beta-synthase and other proteins. J159_03768 SM00487 DEAD-like helicases superfamily J159_03768 SM00490 helicase superfamily c-terminal domain J159_03775 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J159_03782 SM00825 Beta-ketoacyl synthase J159_03797 SM00382 ATPases associated with a variety of cellular activities J159_03801 SM00382 ATPases associated with a variety of cellular activities J159_03801 SM00387 Histidine kinase-like ATPases J159_03801 SM00448 cheY-homologous receiver domain J159_03804 SM00830 Chorismate mutase type II J159_03806 SM00382 ATPases associated with a variety of cellular activities J159_03820 SM00986 Uracil DNA glycosylase superfamily J159_03820 SM00987 UreE urease accessory protein, C-terminal domain J159_03826 SM00382 ATPases associated with a variety of cellular activities J159_03826 SM00930 J159_03826 J159_03830 SM00387 Histidine kinase-like ATPases J159_03830 SM00388 His Kinase A (phosphoacceptor) domain J159_03830 SM00448 cheY-homologous receiver domain J159_03840 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J159_03840 SM00091 PAS domain J159_03840 SM00387 Histidine kinase-like ATPases J159_03840 SM00388 His Kinase A (phosphoacceptor) domain J159_03840 SM00448 cheY-homologous receiver domain J159_03844 SM01005 Alanine racemase, C-terminal domain J159_03846 SM00344 helix_turn_helix ASNC type J159_03857 SM00382 ATPases associated with a variety of cellular activities J159_03859 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. J159_03860 SM00986 Uracil DNA glycosylase superfamily J159_03860 SM00987 UreE urease accessory protein, C-terminal domain J159_03861 SM00729 Elongator protein 3, MiaB family, Radical SAM J159_03874 SM00448 cheY-homologous receiver domain J159_03874 SM00850 LytTr DNA-binding domain J159_03875 SM00387 Histidine kinase-like ATPases J159_03882 SM00091 PAS domain J159_03882 SM00138 Methyltransferase, chemotaxis proteins J159_03882 SM00911 HWE histidine kinase J159_03883 SM00448 cheY-homologous receiver domain J159_03885 SM00382 ATPases associated with a variety of cellular activities J159_03885 SM00448 cheY-homologous receiver domain J159_03896 SM00382 ATPases associated with a variety of cellular activities J159_03911 SM00382 ATPases associated with a variety of cellular activities J159_03912 SM00631 J159_03912 J159_03920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J159_03920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_03921 SM00477 DNA/RNA non-specific endonuclease J159_03921 SM00892 DNA/RNA non-specific endonuclease J159_03952 SM00257 Lysin motif J159_03957 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain J159_03957 SM00437 Bacterial DNA topoisomerase I DNA-binding domain J159_03957 SM00493 J159_03957 J159_03968 SM00487 DEAD-like helicases superfamily J159_03968 SM00490 helicase superfamily c-terminal domain J159_03975 SM00986 Uracil DNA glycosylase superfamily J159_03975 SM00987 UreE urease accessory protein, C-terminal domain J159_03976 SM00448 cheY-homologous receiver domain J159_03978 SM00382 ATPases associated with a variety of cellular activities J159_03979 SM00487 DEAD-like helicases superfamily J159_03979 SM00490 helicase superfamily c-terminal domain J159_03981 SM00357 Cold shock protein domain J159_03981 SM00382 ATPases associated with a variety of cellular activities J159_03981 SM00959 Rho termination factor, N-terminal domain J159_03987 SM00487 DEAD-like helicases superfamily J159_03996 SM00257 Lysin motif J159_04002 SM01150 J159_04002 J159_04011 SM00644 J159_04011 J159_04013 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J159_04020 SM01217 J159_04020 J159_04021 SM00905 Dihydroneopterin aldolase J159_04026 SM00400 zinc finger J159_04026 SM00493 J159_04026 J159_04026 SM00766 DNA primase DnaG DnaB-binding J159_04048 SM00363 S4 RNA-binding domain J159_04057 SM00470 ParB-like nuclease domain J159_04061 SM01259 J159_04061 J159_04067 SM00836 DALR anticodon binding domain J159_04067 SM01016 Arginyl tRNA synthetase N terminal dom J159_04073 SM00823 Phosphopantetheine attachment site J159_04073 SM00824 Thioesterase J159_04080 SM00938 Nitrogen regulatory protein P-II J159_04082 SM00382 ATPases associated with a variety of cellular activities J159_04085 SM00052 Putative diguanylate phosphodiesterase J159_04093 SM00244 prohibitin homologues J159_04103 SM00448 cheY-homologous receiver domain J159_04103 SM00862 Transcriptional regulatory protein, C terminal J159_04104 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J159_04104 SM00387 Histidine kinase-like ATPases J159_04104 SM00388 His Kinase A (phosphoacceptor) domain J159_04108 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J159_04117 SM01060 J159_04117 J159_04120 SM00421 helix_turn_helix, Lux Regulon J159_04120 SM00448 cheY-homologous receiver domain J159_04123 SM00382 ATPases associated with a variety of cellular activities J159_04132 SM00849 Metallo-beta-lactamase superfamily J159_04138 SM00960 Roadblock/LC7 domain J159_04151 SM00387 Histidine kinase-like ATPases J159_04151 SM00388 His Kinase A (phosphoacceptor) domain J159_04152 SM00448 cheY-homologous receiver domain J159_04152 SM00862 Transcriptional regulatory protein, C terminal J159_04156 SM00248 ankyrin repeats J159_04157 SM01060 J159_04157 J159_04158 SM00491 J159_04158 J159_04164 SM00477 DNA/RNA non-specific endonuclease J159_04164 SM00892 DNA/RNA non-specific endonuclease J159_04167 SM01004 Delta-aminolevulinic acid dehydratase J159_04175 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. J159_04179 SM00382 ATPases associated with a variety of cellular activities J159_04181 SM00530 Helix-turn-helix XRE-family like proteins J159_04189 SM00342 helix_turn_helix, arabinose operon control protein J159_04191 SM00382 ATPases associated with a variety of cellular activities J159_04204 SM00881 CoA binding domain J159_04205 SM00116 Domain in cystathionine beta-synthase and other proteins. J159_04205 SM00924 MgtE intracellular N domain J159_04206 SM01057 Eukaryotic-type carbonic anhydrase J159_04211 SM00248 ankyrin repeats J159_04213 SM00825 Beta-ketoacyl synthase J159_04218 SM00822 J159_04218 J159_04227 SM00563 Phosphate acyltransferases J159_04238 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs J159_04238 SM00474 3'-5' exonuclease J159_04238 SM00475 5'-3' exonuclease J159_04238 SM00482 DNA polymerase A domain J159_04241 SM00912 haemagglutination activity domain J159_04245 SM00331 Sigma factor PP2C-like phosphatases J159_04245 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain J159_04250 SM00240 Forkhead associated domain J159_04253 SM00028 Tetratricopeptide repeats J159_04255 SM00220 Serine/Threonine protein kinases, catalytic domain J159_04259 SM00965 Secretin and TonB N terminus short domain J159_04261 SM00915 Jacalin-like lectin domain J159_04267 SM00382 ATPases associated with a variety of cellular activities J159_04267 SM01086 C-terminal, D2-small domain, of ClpB protein J159_04275 SM00342 helix_turn_helix, arabinose operon control protein J159_04277 SM01266 J159_04277 J159_04280 SM00155 Phospholipase D. Active site motifs. J159_04309 SM00421 helix_turn_helix, Lux Regulon J159_04309 SM00448 cheY-homologous receiver domain J159_04319 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J159_04323 SM00346 helix_turn_helix isocitrate lyase regulation J159_04325 SM00091 PAS domain J159_04325 SM00387 Histidine kinase-like ATPases J159_04325 SM00388 His Kinase A (phosphoacceptor) domain J159_04325 SM00448 cheY-homologous receiver domain J159_04330 SM00564 beta-propeller repeat J159_04340 SM00382 ATPases associated with a variety of cellular activities J159_04342 SM00836 DALR anticodon binding domain J159_04344 SM00382 ATPases associated with a variety of cellular activities J159_04358 SM00354 helix_turn _helix lactose operon repressor J159_04361 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J159_04363 SM00758 J159_04363 J159_04363 SM01217 J159_04363 J159_04367 SM00612 J159_04367 J159_04374 SM01007 Class II Aldolase and Adducin N-terminal domain J159_04379 SM00633 Glycosyl hydrolase family 10 J159_04382 SM00633 Glycosyl hydrolase family 10 J159_04384 SM00633 Glycosyl hydrolase family 10 J159_04398 SM00829 Enoylreductase J159_04399 SM00563 Phosphate acyltransferases J159_04401 SM00354 helix_turn _helix lactose operon repressor J159_04405 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family J159_04413 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J159_04413 SM00388 His Kinase A (phosphoacceptor) domain J159_04416 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain J159_04416 SM01232 J159_04416 J159_04424 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J159_04424 SM00091 PAS domain J159_04435 SM00347 helix_turn_helix multiple antibiotic resistance protein J159_04442 SM00155 Phospholipase D. Active site motifs. J159_04458 SM00796 Allophanate hydrolase subunit 1 J159_04458 SM00797 Allophanate hydrolase subunit 2 J159_04458 SM00878 Biotin carboxylase C-terminal domain J159_04472 SM00382 ATPases associated with a variety of cellular activities J159_04482 SM00829 Enoylreductase J159_04490 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J159_04490 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J159_04490 SM00091 PAS domain J159_04490 SM00267 diguanylate cyclase J159_04496 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase J159_04502 SM00014 Acid phosphatase homologues J159_04504 SM00028 Tetratricopeptide repeats