locus-tag class description J155_00004 PF01527 Transposase J155_00006 PF02796 Helix-turn-helix domain of resolvase J155_00006 PF00239 Resolvase, N terminal domain J155_00019 PF07015 VirC1 protein J155_00023 PF03377 TAL effector repeat J155_00027 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system J155_00029 PF00239 Resolvase, N terminal domain J155_00029 PF02796 Helix-turn-helix domain of resolvase J155_00034 PF13700 Domain of unknown function (DUF4158) J155_00034 PF01526 Tn3 transposase DDE domain J155_00037 PF02796 Helix-turn-helix domain of resolvase J155_00037 PF00239 Resolvase, N terminal domain J155_00038 PF03377 TAL effector repeat J155_00042 PF13614 AAA domain J155_00050 PF13406 Transglycosylase SLT domain J155_00051 PF01526 Tn3 transposase DDE domain J155_00051 PF13700 Domain of unknown function (DUF4158) J155_00056 PF01527 Transposase J155_00057 PF03377 TAL effector repeat J155_00061 PF07015 VirC1 protein J155_00074 PF18272 single-stranded DNA binding TraI N-terminal subdomain J155_00074 PF08751 TrwC relaxase J155_00074 PF18272 single-stranded DNA binding TraI N-terminal subdomain J155_00074 PF07057 DNA helicase TraI J155_00074 PF18340 DNA relaxase TraI 2B/2B-like domain J155_00074 PF08751 TrwC relaxase J155_00074 PF07057 DNA helicase TraI J155_00074 PF18340 DNA relaxase TraI 2B/2B-like domain J155_00079 PF01464 Transglycosylase SLT domain J155_00080 PF00437 Type II/IV secretion system protein J155_00081 PF03743 Bacterial conjugation TrbI-like protein J155_00082 PF03524 Conjugal transfer protein J155_00094 PF01527 Transposase J155_00097 PF06613 KorB C-terminal beta-barrel domain J155_00097 PF02195 ParB-like nuclease domain J155_00097 PF08535 KorB domain J155_00098 PF13614 AAA domain J155_00103 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin J155_00104 PF00239 Resolvase, N terminal domain J155_00104 PF02796 Helix-turn-helix domain of resolvase J155_00105 PF00665 Integrase core domain J155_00105 PF13333 Integrase core domain J155_00105 PF13276 HTH-like domain J155_00106 PF13276 HTH-like domain J155_00106 PF13333 Integrase core domain J155_00106 PF00665 Integrase core domain J155_00107 PF03377 TAL effector repeat J155_00108 PF13700 Domain of unknown function (DUF4158) J155_00108 PF01526 Tn3 transposase DDE domain J155_00111 PF00239 Resolvase, N terminal domain J155_00111 PF02796 Helix-turn-helix domain of resolvase J155_00112 PF00308 Bacterial dnaA protein J155_00112 PF08299 Bacterial dnaA protein helix-turn-helix J155_00112 PF11638 DnaA N-terminal domain J155_00113 PF02767 DNA polymerase III beta subunit, central domain J155_00113 PF02768 DNA polymerase III beta subunit, C-terminal domain J155_00113 PF00712 DNA polymerase III beta subunit, N-terminal domain J155_00114 PF02463 RecF/RecN/SMC N terminal domain J155_00116 PF00204 DNA gyrase B J155_00116 PF01751 Toprim domain J155_00116 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_00116 PF18053 DNA gyrase B subunit insert domain J155_00116 PF00986 DNA gyrase B subunit, carboxyl terminus J155_00118 PF01435 Peptidase family M48 J155_00120 PF03544 Gram-negative bacterial TonB protein C-terminal J155_00121 PF01618 MotA/TolQ/ExbB proton channel family J155_00122 PF02472 Biopolymer transport protein ExbD/TolR J155_00123 PF02472 Biopolymer transport protein ExbD/TolR J155_00124 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ J155_00126 PF13091 PLD-like domain J155_00126 PF13396 Phospholipase_D-nuclease N-terminal J155_00129 PF04055 Radical SAM superfamily J155_00131 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J155_00134 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J155_00134 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J155_00135 PF03572 Peptidase family S41 J155_00135 PF13180 PDZ domain J155_00136 PF01551 Peptidase family M23 J155_00138 PF04389 Peptidase family M28 J155_00140 PF00150 Cellulase (glycosyl hydrolase family 5) J155_00141 PF00150 Cellulase (glycosyl hydrolase family 5) J155_00142 PF00150 Cellulase (glycosyl hydrolase family 5) J155_00143 PF00107 Zinc-binding dehydrogenase J155_00143 PF08240 Alcohol dehydrogenase GroES-like domain J155_00144 PF07992 Pyridine nucleotide-disulphide oxidoreductase J155_00144 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J155_00145 PF00310 Glutamine amidotransferases class-II J155_00145 PF04898 Glutamate synthase central domain J155_00145 PF01645 Conserved region in glutamate synthase J155_00145 PF01493 GXGXG motif J155_00149 PF01804 Penicillin amidase J155_00151 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_00151 PF03466 LysR substrate binding domain J155_00154 PF02397 Bacterial sugar transferase J155_00155 PF02350 UDP-N-acetylglucosamine 2-epimerase J155_00157 PF03808 Glycosyl transferase WecB/TagA/CpsF family J155_00158 PF13439 Glycosyltransferase Family 4 J155_00158 PF00534 Glycosyl transferases group 1 J155_00162 PF00733 Asparagine synthase J155_00162 PF13537 Glutamine amidotransferase domain J155_00165 PF16363 GDP-mannose 4,6 dehydratase J155_00168 PF00664 ABC transporter transmembrane region J155_00168 PF00005 ABC transporter J155_00170 PF00733 Asparagine synthase J155_00170 PF13537 Glutamine amidotransferase domain J155_00175 PF00685 Sulfotransferase domain J155_00192 PF00271 Helicase conserved C-terminal domain J155_00192 PF00270 DEAD/DEAH box helicase J155_00192 PF09369 Domain of unknown function (DUF1998) J155_00193 PF03006 Haemolysin-III related J155_00196 PF00106 short chain dehydrogenase J155_00198 PF03466 LysR substrate binding domain J155_00198 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_00202 PF02525 Flavodoxin-like fold J155_00204 PF01527 Transposase J155_00205 PF13333 Integrase core domain J155_00205 PF13276 HTH-like domain J155_00205 PF00665 Integrase core domain J155_00213 PF05532 CsbD-like J155_00217 PF01447 Thermolysin metallopeptidase, catalytic domain J155_00217 PF02868 Thermolysin metallopeptidase, alpha-helical domain J155_00217 PF16485 Protealysin propeptide J155_00219 PF00293 NUDIX domain J155_00219 PF13344 Haloacid dehalogenase-like hydrolase J155_00222 PF00085 Thioredoxin J155_00223 PF00083 Sugar (and other) transporter J155_00223 PF08946 Osmosensory transporter coiled coil J155_00231 PF07726 ATPase family associated with various cellular activities (AAA) J155_00231 PF17863 AAA lid domain J155_00237 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain J155_00238 PF00155 Aminotransferase class I and II J155_00239 PF07715 TonB-dependent Receptor Plug Domain J155_00239 PF00593 TonB dependent receptor J155_00241 PF07883 Cupin domain J155_00242 PF00171 Aldehyde dehydrogenase family J155_00246 PF02735 Ku70/Ku80 beta-barrel domain J155_00247 PF01070 FMN-dependent dehydrogenase J155_00248 PF00144 Beta-lactamase J155_00249 PF07730 Histidine kinase J155_00250 PF00196 Bacterial regulatory proteins, luxR family J155_00250 PF00072 Response regulator receiver domain J155_00254 PF00486 Transcriptional regulatory protein, C terminal J155_00254 PF18500 CadC C-terminal domain 1 J155_00255 PF07055 Enoyl reductase FAD binding domain J155_00255 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J155_00255 PF12241 Trans-2-enoyl-CoA reductase catalytic region J155_00257 PF00294 pfkB family carbohydrate kinase J155_00268 PF01527 Transposase J155_00269 PF13276 HTH-like domain J155_00269 PF00665 Integrase core domain J155_00269 PF13333 Integrase core domain J155_00270 PF11896 Domain of unknown function (DUF3416) J155_00270 PF00128 Alpha amylase, catalytic domain J155_00271 PF16657 Maltogenic Amylase, C-terminal domain J155_00271 PF00128 Alpha amylase, catalytic domain J155_00272 PF02806 Alpha amylase, C-terminal all-beta domain J155_00272 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J155_00272 PF00128 Alpha amylase, catalytic domain J155_00274 PF00248 Aldo/keto reductase family J155_00275 PF00135 Carboxylesterase family J155_00276 PF07859 alpha/beta hydrolase fold J155_00276 PF13472 GDSL-like Lipase/Acylhydrolase family J155_00278 PF03480 Bacterial extracellular solute-binding protein, family 7 J155_00280 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J155_00281 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J155_00281 PF04616 Glycosyl hydrolases family 43 J155_00282 PF00356 Bacterial regulatory proteins, lacI family J155_00283 PF04962 KduI/IolB family J155_00286 PF00657 GDSL-like Lipase/Acylhydrolase J155_00289 PF00351 Biopterin-dependent aromatic amino acid hydroxylase J155_00290 PF01037 Lrp/AsnC ligand binding domain J155_00291 PF07715 TonB-dependent Receptor Plug Domain J155_00291 PF07660 Secretin and TonB N terminus short domain J155_00291 PF00593 TonB dependent receptor J155_00292 PF01734 Patatin-like phospholipase J155_00294 PF00005 ABC transporter J155_00297 PF00005 ABC transporter J155_00298 PF00528 Binding-protein-dependent transport system inner membrane component J155_00300 PF12867 DinB superfamily J155_00300 PF03781 Sulfatase-modifying factor enzyme 1 J155_00303 PF01381 Helix-turn-helix J155_00307 PF10609 NUBPL iron-transfer P-loop NTPase J155_00307 PF01883 Iron-sulfur cluster assembly protein J155_00310 PF13091 PLD-like domain J155_00311 PF03061 Thioesterase superfamily J155_00317 PF08240 Alcohol dehydrogenase GroES-like domain J155_00317 PF00107 Zinc-binding dehydrogenase J155_00319 PF02673 Bacitracin resistance protein BacA J155_00320 PF03951 Glutamine synthetase, beta-Grasp domain J155_00320 PF00120 Glutamine synthetase, catalytic domain J155_00321 PF00543 Nitrogen regulatory protein P-II J155_00322 PF00909 Ammonium Transporter Family J155_00323 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_00323 PF00989 PAS fold J155_00323 PF00512 His Kinase A (phospho-acceptor) domain J155_00324 PF00072 Response regulator receiver domain J155_00324 PF02954 Bacterial regulatory protein, Fis family J155_00324 PF00158 Sigma-54 interaction domain J155_00325 PF00080 Copper/zinc superoxide dismutase (SODC) J155_00326 PF00080 Copper/zinc superoxide dismutase (SODC) J155_00327 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J155_00329 PF00108 Thiolase, N-terminal domain J155_00329 PF02803 Thiolase, C-terminal domain J155_00336 PF00581 Rhodanese-like domain J155_00337 PF02556 Preprotein translocase subunit SecB J155_00338 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J155_00338 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J155_00340 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J155_00340 PF00205 Thiamine pyrophosphate enzyme, central domain J155_00340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J155_00341 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_00342 PF02954 Bacterial regulatory protein, Fis family J155_00342 PF00158 Sigma-54 interaction domain J155_00342 PF00072 Response regulator receiver domain J155_00345 PF07690 Major Facilitator Superfamily J155_00346 PF00588 SpoU rRNA Methylase family J155_00349 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J155_00349 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J155_00350 PF02661 Fic/DOC family J155_00350 PF13784 Fic/DOC family N-terminal J155_00351 PF00561 alpha/beta hydrolase fold J155_00352 PF03692 Putative zinc- or iron-chelating domain J155_00353 PF00501 AMP-binding enzyme J155_00355 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family J155_00357 PF07478 D-ala D-ala ligase C-terminus J155_00357 PF01820 D-ala D-ala ligase N-terminus J155_00359 PF03109 ABC1 family J155_00361 PF00849 RNA pseudouridylate synthase J155_00363 PF00472 RF-1 domain J155_00365 PF01112 Asparaginase J155_00366 PF01432 Peptidase family M3 J155_00367 PF12706 Beta-lactamase superfamily domain J155_00370 PF12833 Helix-turn-helix domain J155_00371 PF00999 Sodium/hydrogen exchanger family J155_00372 PF03466 LysR substrate binding domain J155_00372 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_00373 PF01274 Malate synthase J155_00374 PF00463 Isocitrate lyase family J155_00375 PF00990 Diguanylate cyclase, GGDEF domain J155_00379 PF00326 Prolyl oligopeptidase family J155_00380 PF02785 Biotin carboxylase C-terminal domain J155_00380 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J155_00380 PF00364 Biotin-requiring enzyme J155_00380 PF00289 Biotin carboxylase, N-terminal domain J155_00381 PF01039 Carboxyl transferase domain J155_00382 PF02770 Acyl-CoA dehydrogenase, middle domain J155_00382 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J155_00382 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J155_00393 PF07683 Cobalamin synthesis protein cobW C-terminal domain J155_00393 PF02492 CobW/HypB/UreG, nucleotide-binding domain J155_00397 PF03969 AFG1-like ATPase J155_00398 PF01047 MarR family J155_00399 PF02566 OsmC-like protein J155_00404 PF00107 Zinc-binding dehydrogenase J155_00404 PF16884 N-terminal domain of oxidoreductase J155_00407 PF00849 RNA pseudouridylate synthase J155_00408 PF00593 TonB dependent receptor J155_00410 PF08482 ATP-dependent helicase C-terminal J155_00410 PF00271 Helicase conserved C-terminal domain J155_00410 PF04408 Helicase associated domain (HA2) J155_00410 PF00270 DEAD/DEAH box helicase J155_00411 PF07308 Protein of unknown function (DUF1456) J155_00412 PF00576 HIUase/Transthyretin family J155_00413 PF13454 FAD-NAD(P)-binding J155_00414 PF09349 OHCU decarboxylase J155_00414 PF01014 Uricase J155_00417 PF00266 Aminotransferase class-V J155_00418 PF01546 Peptidase family M20/M25/M40 J155_00418 PF07687 Peptidase dimerisation domain J155_00419 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_00419 PF03466 LysR substrate binding domain J155_00420 PF07690 Major Facilitator Superfamily J155_00423 PF01425 Amidase J155_00424 PF01156 Inosine-uridine preferring nucleoside hydrolase J155_00426 PF00860 Permease family J155_00427 PF00111 2Fe-2S iron-sulfur cluster binding domain J155_00428 PF00355 Rieske [2Fe-2S] domain J155_00429 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_00429 PF03466 LysR substrate binding domain J155_00430 PF01026 TatD related DNase J155_00433 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_00433 PF03466 LysR substrate binding domain J155_00434 PF07690 Major Facilitator Superfamily J155_00437 PF02146 Sir2 family J155_00438 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J155_00439 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J155_00439 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J155_00441 PF00551 Formyl transferase J155_00442 PF00072 Response regulator receiver domain J155_00442 PF00486 Transcriptional regulatory protein, C terminal J155_00443 PF00512 His Kinase A (phospho-acceptor) domain J155_00443 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_00443 PF00672 HAMP domain J155_00444 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J155_00444 PF00529 HlyD membrane-fusion protein of T1SS J155_00445 PF00873 AcrB/AcrD/AcrF family J155_00446 PF02321 Outer membrane efflux protein J155_00448 PF02219 Methylenetetrahydrofolate reductase J155_00449 PF02677 Epoxyqueuosine reductase QueH J155_00450 PF03466 LysR substrate binding domain J155_00450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_00451 PF03358 NADPH-dependent FMN reductase J155_00453 PF01717 Cobalamin-independent synthase, Catalytic domain J155_00453 PF08267 Cobalamin-independent synthase, N-terminal domain J155_00454 PF03812 2-keto-3-deoxygluconate permease J155_00456 PF05368 NmrA-like family J155_00457 PF01638 HxlR-like helix-turn-helix J155_00461 PF13333 Integrase core domain J155_00461 PF13276 HTH-like domain J155_00461 PF00665 Integrase core domain J155_00462 PF01527 Transposase J155_00463 PF13495 Phage integrase, N-terminal SAM-like domain J155_00463 PF00589 Phage integrase family J155_00464 PF00920 Dehydratase family J155_00467 PF00132 Bacterial transferase hexapeptide (six repeats) J155_00468 PF07690 Major Facilitator Superfamily J155_00469 PF01966 HD domain J155_00469 PF11871 Domain of unknown function (DUF3391) J155_00473 PF00171 Aldehyde dehydrogenase family J155_00475 PF01494 FAD binding domain J155_00478 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J155_00478 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J155_00479 PF00230 Major intrinsic protein J155_00480 PF16901 C-terminal domain of alpha-glycerophosphate oxidase J155_00480 PF01266 FAD dependent oxidoreductase J155_00481 PF00455 DeoR C terminal sensor domain J155_00481 PF08220 DeoR-like helix-turn-helix domain J155_00483 PF00355 Rieske [2Fe-2S] domain J155_00484 PF01144 Coenzyme A transferase J155_00485 PF01144 Coenzyme A transferase J155_00486 PF02803 Thiolase, C-terminal domain J155_00486 PF00108 Thiolase, N-terminal domain J155_00487 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal J155_00487 PF00775 Dioxygenase J155_00489 PF00206 Lyase J155_00489 PF10397 Adenylosuccinate lyase C-terminus J155_00490 PF12146 Serine aminopeptidase, S33 J155_00491 PF02627 Carboxymuconolactone decarboxylase family J155_00493 PF09339 IclR helix-turn-helix domain J155_00493 PF01614 Bacterial transcriptional regulator J155_00495 PF07859 alpha/beta hydrolase fold J155_00496 PF10677 Protein of unknown function (DUF2490) J155_00497 PF13932 GidA associated domain J155_00497 PF01134 Glucose inhibited division protein A J155_00499 PF00291 Pyridoxal-phosphate dependent enzyme J155_00503 PF13649 Methyltransferase domain J155_00505 PF12697 Alpha/beta hydrolase family J155_00507 PF00155 Aminotransferase class I and II J155_00508 PF04055 Radical SAM superfamily J155_00508 PF06968 Biotin and Thiamin Synthesis associated domain J155_00510 PF01040 UbiA prenyltransferase family J155_00514 PF05819 NolX protein J155_00522 PF01313 Bacterial export proteins, family 3 J155_00523 PF00813 FliP family J155_00526 PF00771 FHIPEP family J155_00527 PF01312 FlhB HrpN YscU SpaS Family J155_00530 PF01514 Secretory protein of YscJ/FliF family J155_00533 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J155_00533 PF18269 T3SS EscN ATPase C-terminal domain J155_00533 PF02874 ATP synthase alpha/beta family, beta-barrel domain J155_00535 PF01311 Bacterial export proteins, family 1 J155_00538 PF01464 Transglycosylase SLT domain J155_00541 PF12794 Mechanosensitive ion channel inner membrane domain 1 J155_00541 PF12795 Mechanosensitive ion channel porin domain J155_00541 PF00924 Mechanosensitive ion channel J155_00542 PF00884 Sulfatase J155_00543 PF03109 ABC1 family J155_00544 PF05661 Protein of unknown function (DUF808) J155_00545 PF00072 Response regulator receiver domain J155_00545 PF00990 Diguanylate cyclase, GGDEF domain J155_00546 PF00534 Glycosyl transferases group 1 J155_00546 PF08323 Starch synthase catalytic domain J155_00547 PF00128 Alpha amylase, catalytic domain J155_00547 PF02806 Alpha amylase, C-terminal all-beta domain J155_00547 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J155_00548 PF00128 Alpha amylase, catalytic domain J155_00548 PF11941 Domain of unknown function (DUF3459) J155_00548 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J155_00549 PF02446 4-alpha-glucanotransferase J155_00550 PF00128 Alpha amylase, catalytic domain J155_00552 PF00128 Alpha amylase, catalytic domain J155_00552 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J155_00553 PF13460 NAD(P)H-binding J155_00556 PF06903 VirK protein J155_00557 PF02321 Outer membrane efflux protein J155_00560 PF00873 AcrB/AcrD/AcrF family J155_00563 PF00270 DEAD/DEAH box helicase J155_00563 PF00271 Helicase conserved C-terminal domain J155_00565 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J155_00565 PF00364 Biotin-requiring enzyme J155_00565 PF02817 e3 binding domain J155_00567 PF02780 Transketolase, C-terminal domain J155_00567 PF02779 Transketolase, pyrimidine binding domain J155_00568 PF00676 Dehydrogenase E1 component J155_00570 PF03301 Tryptophan 2,3-dioxygenase J155_00571 PF00854 POT family J155_00573 PF01047 MarR family J155_00574 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J155_00575 PF04209 homogentisate 1,2-dioxygenase J155_00578 PF03334 Na+/H+ antiporter subunit J155_00579 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) J155_00581 PF00361 Proton-conducting membrane transporter J155_00582 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J155_00583 PF00361 Proton-conducting membrane transporter J155_00583 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J155_00583 PF13244 Domain of unknown function (DUF4040) J155_00583 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J155_00586 PF01483 Proprotein convertase P-domain J155_00586 PF01447 Thermolysin metallopeptidase, catalytic domain J155_00586 PF02868 Thermolysin metallopeptidase, alpha-helical domain J155_00586 PF07504 Fungalysin/Thermolysin Propeptide Motif J155_00587 PF00182 Chitinase class I J155_00591 PF01259 SAICAR synthetase J155_00592 PF00226 DnaJ domain J155_00592 PF05099 Tellurite resistance protein TerB J155_00594 PF00834 Ribulose-phosphate 3 epimerase family J155_00595 PF00583 Acetyltransferase (GNAT) family J155_00596 PF00781 Diacylglycerol kinase catalytic domain J155_00597 PF00425 chorismate binding enzyme J155_00597 PF04715 Anthranilate synthase component I, N terminal region J155_00599 PF00117 Glutamine amidotransferase class-I J155_00601 PF02885 Glycosyl transferase family, helical bundle domain J155_00601 PF00591 Glycosyl transferase family, a/b domain J155_00602 PF00218 Indole-3-glycerol phosphate synthase J155_00604 PF00027 Cyclic nucleotide-binding domain J155_00604 PF00325 Bacterial regulatory proteins, crp family J155_00605 PF02675 S-adenosylmethionine decarboxylase J155_00606 PF00893 Small Multidrug Resistance protein J155_00607 PF03232 Ubiquinone biosynthesis protein COQ7 J155_00608 PF00572 Ribosomal protein L13 J155_00609 PF00380 Ribosomal protein S9/S16 J155_00612 PF00293 NUDIX domain J155_00613 PF00210 Ferritin-like domain J155_00614 PF00512 His Kinase A (phospho-acceptor) domain J155_00614 PF01627 Hpt domain J155_00614 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_00614 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J155_00614 PF00072 Response regulator receiver domain J155_00614 PF00672 HAMP domain J155_00615 PF00486 Transcriptional regulatory protein, C terminal J155_00615 PF00072 Response regulator receiver domain J155_00619 PF01521 Iron-sulphur cluster biosynthesis J155_00622 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain J155_00622 PF00293 NUDIX domain J155_00622 PF09297 NADH pyrophosphatase zinc ribbon domain J155_00623 PF17113 Regulatory signalling modulator protein AmpE J155_00623 PF03186 CobD/Cbib protein J155_00626 PF07690 Major Facilitator Superfamily J155_00627 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_00627 PF03466 LysR substrate binding domain J155_00628 PF07690 Major Facilitator Superfamily J155_00629 PF12805 FUSC-like inner membrane protein yccS J155_00630 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J155_00630 PF02843 Phosphoribosylglycinamide synthetase, C domain J155_00630 PF02844 Phosphoribosylglycinamide synthetase, N domain J155_00632 PF02142 MGS-like domain J155_00632 PF01808 AICARFT/IMPCHase bienzyme J155_00633 PF01066 CDP-alcohol phosphatidyltransferase J155_00634 PF12147 Putative methyltransferase J155_00634 PF12146 Serine aminopeptidase, S33 J155_00635 PF00782 Dual specificity phosphatase, catalytic domain J155_00641 PF02954 Bacterial regulatory protein, Fis family J155_00644 PF01381 Helix-turn-helix J155_00649 PF00289 Biotin carboxylase, N-terminal domain J155_00649 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J155_00649 PF02785 Biotin carboxylase C-terminal domain J155_00651 PF00364 Biotin-requiring enzyme J155_00652 PF01220 Dehydroquinase class II J155_00653 PF02683 Cytochrome C biogenesis protein transmembrane region J155_00653 PF11412 Disulphide bond corrector protein DsbC J155_00654 PF03091 CutA1 divalent ion tolerance protein J155_00657 PF01852 START domain J155_00659 PF00106 short chain dehydrogenase J155_00660 PF04231 Endonuclease I J155_00661 PF00166 Chaperonin 10 Kd subunit J155_00662 PF00118 TCP-1/cpn60 chaperonin family J155_00664 PF00593 TonB dependent receptor J155_00664 PF07715 TonB-dependent Receptor Plug Domain J155_00665 PF00793 DAHP synthetase I family J155_00668 PF08450 SMP-30/Gluconolactonase/LRE-like region J155_00670 PF03710 Glutamate-ammonia ligase adenylyltransferase J155_00670 PF08335 GlnD PII-uridylyltransferase J155_00671 PF02592 Putative vitamin uptake transporter J155_00674 PF00881 Nitroreductase family J155_00675 PF04264 YceI-like domain J155_00679 PF16957 Malonate decarboxylase, alpha subunit, transporter J155_00680 PF06857 Malonate decarboxylase delta subunit (MdcD) J155_00681 PF01039 Carboxyl transferase domain J155_00683 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG J155_00684 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase J155_00686 PF00698 Acyl transferase domain J155_00688 PF00392 Bacterial regulatory proteins, gntR family J155_00688 PF07729 FCD domain J155_00689 PF13419 Haloacid dehalogenase-like hydrolase J155_00695 PF07745 Glycosyl hydrolase family 53 J155_00696 PF17831 Pyruvate dehydrogenase E1 component middle domain J155_00696 PF00456 Transketolase, thiamine diphosphate binding domain J155_00697 PF13333 Integrase core domain J155_00697 PF00665 Integrase core domain J155_00697 PF13276 HTH-like domain J155_00698 PF01527 Transposase J155_00699 PF00106 short chain dehydrogenase J155_00702 PF00106 short chain dehydrogenase J155_00704 PF13409 Glutathione S-transferase, N-terminal domain J155_00709 PF12823 Domain of unknown function (DUF3817) J155_00709 PF03176 MMPL family J155_00710 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J155_00710 PF00326 Prolyl oligopeptidase family J155_00711 PF07759 Protein of unknown function (DUF1615) J155_00712 PF05230 MASE2 domain J155_00712 PF00990 Diguanylate cyclase, GGDEF domain J155_00716 PF00892 EamA-like transporter family J155_00717 PF00497 Bacterial extracellular solute-binding proteins, family 3 J155_00720 PF00324 Amino acid permease J155_00722 PF01544 CorA-like Mg2+ transporter protein J155_00724 PF01204 Trehalase J155_00726 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J155_00726 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J155_00731 PF00990 Diguanylate cyclase, GGDEF domain J155_00731 PF00563 EAL domain J155_00731 PF08447 PAS fold J155_00731 PF08448 PAS fold J155_00732 PF02203 Tar ligand binding domain homologue J155_00732 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_00732 PF00672 HAMP domain J155_00733 PF00553 Cellulose binding domain J155_00733 PF00150 Cellulase (glycosyl hydrolase family 5) J155_00734 PF00916 Sulfate permease family J155_00734 PF01740 STAS domain J155_00735 PF08448 PAS fold J155_00735 PF00990 Diguanylate cyclase, GGDEF domain J155_00738 PF13632 Glycosyl transferase family group 2 J155_00740 PF07694 5TMR of 5TMR-LYT J155_00740 PF06580 Histidine kinase J155_00741 PF00072 Response regulator receiver domain J155_00741 PF04397 LytTr DNA-binding domain J155_00742 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J155_00742 PF03900 Porphobilinogen deaminase, C-terminal domain J155_00747 PF00326 Prolyl oligopeptidase family J155_00747 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J155_00749 PF00155 Aminotransferase class I and II J155_00750 PF00326 Prolyl oligopeptidase family J155_00750 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J155_00751 PF04304 Protein of unknown function (DUF454) J155_00753 PF01678 Diaminopimelate epimerase J155_00755 PF02899 Phage integrase, N-terminal SAM-like domain J155_00755 PF00589 Phage integrase family J155_00756 PF00227 Proteasome subunit J155_00757 PF00004 ATPase family associated with various cellular activities (AAA) J155_00757 PF07724 AAA domain (Cdc48 subfamily) J155_00757 PF10431 C-terminal, D2-small domain, of ClpB protein J155_00759 PF13673 Acetyltransferase (GNAT) domain J155_00760 PF13533 Biotin-lipoyl like J155_00762 PF01209 ubiE/COQ5 methyltransferase family J155_00763 PF00990 Diguanylate cyclase, GGDEF domain J155_00763 PF03707 Bacterial signalling protein N terminal repeat J155_00763 PF00563 EAL domain J155_00764 PF01433 Peptidase family M1 domain J155_00764 PF11838 ERAP1-like C-terminal domain J155_00767 PF13360 PQQ-like domain J155_00768 PF00497 Bacterial extracellular solute-binding proteins, family 3 J155_00771 PF00107 Zinc-binding dehydrogenase J155_00771 PF08240 Alcohol dehydrogenase GroES-like domain J155_00773 PF01590 GAF domain J155_00773 PF00158 Sigma-54 interaction domain J155_00773 PF02954 Bacterial regulatory protein, Fis family J155_00774 PF00294 pfkB family carbohydrate kinase J155_00776 PF04085 rod shape-determining protein MreC J155_00778 PF00905 Penicillin binding protein transpeptidase domain J155_00778 PF03717 Penicillin-binding Protein dimerisation domain J155_00779 PF01098 Cell cycle protein J155_00780 PF00295 Glycosyl hydrolases family 28 J155_00781 PF13406 Transglycosylase SLT domain J155_00782 PF03330 Lytic transglycolase J155_00782 PF05036 Sporulation related domain J155_00783 PF00768 D-alanyl-D-alanine carboxypeptidase J155_00783 PF07943 Penicillin-binding protein 5, C-terminal domain J155_00785 PF04359 Protein of unknown function (DUF493) J155_00786 PF03099 Biotin/lipoate A/B protein ligase family J155_00787 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family J155_00787 PF04055 Radical SAM superfamily J155_00788 PF00595 PDZ domain J155_00788 PF11818 C-terminal domain of tail specific protease (DUF3340) J155_00788 PF03572 Peptidase family S41 J155_00788 PF17804 Tail specific protease N-terminal domain J155_00790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_00790 PF03466 LysR substrate binding domain J155_00792 PF00293 NUDIX domain J155_00792 PF01467 Cytidylyltransferase-like J155_00799 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J155_00799 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J155_00800 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J155_00800 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J155_00801 PF04972 BON domain J155_00802 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_00802 PF00512 His Kinase A (phospho-acceptor) domain J155_00802 PF01590 GAF domain J155_00802 PF00360 Phytochrome region J155_00802 PF08446 PAS fold J155_00803 PF00072 Response regulator receiver domain J155_00804 PF00512 His Kinase A (phospho-acceptor) domain J155_00804 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_00805 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J155_00806 PF00106 short chain dehydrogenase J155_00814 PF00263 Bacterial type II and III secretion system protein J155_00814 PF03958 Bacterial type II/III secretion system short domain J155_00815 PF00437 Type II/IV secretion system protein J155_00816 PF00482 Type II secretion system (T2SS), protein F J155_00817 PF07963 Prokaryotic N-terminal methylation motif J155_00817 PF08334 Type II secretion system (T2SS), protein G J155_00818 PF12019 Type II transport protein GspH J155_00818 PF07963 Prokaryotic N-terminal methylation motif J155_00820 PF11612 Type II secretion system (T2SS), protein J J155_00820 PF07963 Prokaryotic N-terminal methylation motif J155_00821 PF03934 Type II secretion system (T2SS), protein K J155_00827 PF02837 Glycosyl hydrolases family 2, sugar binding domain J155_00827 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J155_00827 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J155_00827 PF00703 Glycosyl hydrolases family 2 J155_00827 PF16355 Domain of unknown function (DUF4982) J155_00832 PF07690 Major Facilitator Superfamily J155_00833 PF00356 Bacterial regulatory proteins, lacI family J155_00834 PF01380 SIS domain J155_00835 PF01979 Amidohydrolase family J155_00837 PF12627 Probable RNA and SrmB- binding site of polymerase A J155_00837 PF01743 Poly A polymerase head domain J155_00837 PF01966 HD domain J155_00838 PF05199 GMC oxidoreductase J155_00838 PF00732 GMC oxidoreductase J155_00839 PF00171 Aldehyde dehydrogenase family J155_00840 PF02028 BCCT, betaine/carnitine/choline family transporter J155_00842 PF01323 DSBA-like thioredoxin domain J155_00845 PF00034 Cytochrome c J155_00846 PF01926 50S ribosome-binding GTPase J155_00847 PF00753 Metallo-beta-lactamase superfamily J155_00847 PF10996 Beta-Casp domain J155_00847 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain J155_00849 PF04107 Glutamate-cysteine ligase family 2(GCS2) J155_00850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_00850 PF00512 His Kinase A (phospho-acceptor) domain J155_00850 PF00672 HAMP domain J155_00851 PF00072 Response regulator receiver domain J155_00851 PF00486 Transcriptional regulatory protein, C terminal J155_00854 PF02583 Metal-sensitive transcriptional repressor J155_00855 PF00107 Zinc-binding dehydrogenase J155_00855 PF08240 Alcohol dehydrogenase GroES-like domain J155_00856 PF04828 Glutathione-dependent formaldehyde-activating enzyme J155_00857 PF00756 Putative esterase J155_00858 PF00155 Aminotransferase class I and II J155_00858 PF00392 Bacterial regulatory proteins, gntR family J155_00859 PF02567 Phenazine biosynthesis-like protein J155_00860 PF00892 EamA-like transporter family J155_00862 PF00005 ABC transporter J155_00862 PF12848 ABC transporter J155_00864 PF00464 Serine hydroxymethyltransferase J155_00865 PF03477 ATP cone domain J155_00867 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J155_00867 PF01872 RibD C-terminal domain J155_00870 PF00677 Lumazine binding domain J155_00871 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J155_00871 PF00925 GTP cyclohydrolase II J155_00872 PF00885 6,7-dimethyl-8-ribityllumazine synthase J155_00873 PF01029 NusB family J155_00874 PF00586 AIR synthase related protein, N-terminal domain J155_00874 PF02769 AIR synthase related protein, C-terminal domain J155_00878 PF03814 Potassium-transporting ATPase A subunit J155_00880 PF02669 K+-transporting ATPase, c chain J155_00881 PF02702 Osmosensitive K+ channel His kinase sensor domain J155_00881 PF00512 His Kinase A (phospho-acceptor) domain J155_00881 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_00881 PF13492 GAF domain J155_00881 PF13493 Domain of unknown function (DUF4118) J155_00882 PF00486 Transcriptional regulatory protein, C terminal J155_00882 PF00072 Response regulator receiver domain J155_00885 PF02913 FAD linked oxidases, C-terminal domain J155_00885 PF01565 FAD binding domain J155_00886 PF04307 LexA-binding, inner membrane-associated putative hydrolase J155_00887 PF02021 Uncharacterised protein family UPF0102 J155_00889 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J155_00894 PF02381 MraZ protein, putative antitoxin-like J155_00895 PF01795 MraW methylase family J155_00896 PF04999 Cell division protein FtsL J155_00897 PF03717 Penicillin-binding Protein dimerisation domain J155_00897 PF00905 Penicillin binding protein transpeptidase domain J155_00898 PF01225 Mur ligase family, catalytic domain J155_00898 PF02875 Mur ligase family, glutamate ligase domain J155_00898 PF08245 Mur ligase middle domain J155_00899 PF08245 Mur ligase middle domain J155_00899 PF01225 Mur ligase family, catalytic domain J155_00899 PF02875 Mur ligase family, glutamate ligase domain J155_00900 PF00953 Glycosyl transferase family 4 J155_00901 PF01098 Cell cycle protein J155_00902 PF04101 Glycosyltransferase family 28 C-terminal domain J155_00902 PF03033 Glycosyltransferase family 28 N-terminal domain J155_00903 PF01225 Mur ligase family, catalytic domain J155_00903 PF08245 Mur ligase middle domain J155_00903 PF02875 Mur ligase family, glutamate ligase domain J155_00904 PF01820 D-ala D-ala ligase N-terminus J155_00904 PF07478 D-ala D-ala ligase C-terminus J155_00905 PF03799 Cell division protein FtsQ J155_00905 PF08478 POTRA domain, FtsQ-type J155_00906 PF02491 SHS2 domain inserted in FTSA J155_00907 PF00091 Tubulin/FtsZ family, GTPase domain J155_00907 PF12327 FtsZ family, C-terminal domain J155_00908 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase J155_00910 PF01476 LysM domain J155_00910 PF08525 Opacity-associated protein A N-terminal motif J155_00910 PF01551 Peptidase family M23 J155_00911 PF07516 SecA Wing and Scaffold domain J155_00911 PF07517 SecA DEAD-like domain J155_00911 PF02810 SEC-C motif J155_00911 PF01043 SecA preprotein cross-linking domain J155_00912 PF00293 NUDIX domain J155_00914 PF02219 Methylenetetrahydrofolate reductase J155_00917 PF08659 KR domain J155_00917 PF00698 Acyl transferase domain J155_00917 PF08240 Alcohol dehydrogenase GroES-like domain J155_00917 PF00107 Zinc-binding dehydrogenase J155_00917 PF00109 Beta-ketoacyl synthase, N-terminal domain J155_00917 PF02801 Beta-ketoacyl synthase, C-terminal domain J155_00917 PF16197 Ketoacyl-synthetase C-terminal extension J155_00917 PF00550 Phosphopantetheine attachment site J155_00917 PF14765 Polyketide synthase dehydratase J155_00918 PF09286 Pro-kumamolisin, activation domain J155_00918 PF00082 Subtilase family J155_00920 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J155_00921 PF00128 Alpha amylase, catalytic domain J155_00927 PF13649 Methyltransferase domain J155_00928 PF05221 S-adenosyl-L-homocysteine hydrolase J155_00928 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain J155_00931 PF00311 Phosphoenolpyruvate carboxylase J155_00936 PF00328 Histidine phosphatase superfamily (branch 2) J155_00937 PF02773 S-adenosylmethionine synthetase, C-terminal domain J155_00937 PF00438 S-adenosylmethionine synthetase, N-terminal domain J155_00937 PF02772 S-adenosylmethionine synthetase, central domain J155_00939 PF13649 Methyltransferase domain J155_00940 PF01207 Dihydrouridine synthase (Dus) J155_00943 PF00294 pfkB family carbohydrate kinase J155_00944 PF01773 Na+ dependent nucleoside transporter N-terminus J155_00944 PF07662 Na+ dependent nucleoside transporter C-terminus J155_00944 PF07670 Nucleoside recognition J155_00945 PF00248 Aldo/keto reductase family J155_00947 PF00593 TonB dependent receptor J155_00947 PF07715 TonB-dependent Receptor Plug Domain J155_00952 PF00528 Binding-protein-dependent transport system inner membrane component J155_00953 PF00005 ABC transporter J155_00955 PF02668 Taurine catabolism dioxygenase TauD, TfdA family J155_00957 PF00005 ABC transporter J155_00958 PF13472 GDSL-like Lipase/Acylhydrolase family J155_00959 PF00486 Transcriptional regulatory protein, C terminal J155_00959 PF00072 Response regulator receiver domain J155_00960 PF08521 Two-component sensor kinase N-terminal J155_00960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_00960 PF00512 His Kinase A (phospho-acceptor) domain J155_00962 PF01219 Prokaryotic diacylglycerol kinase J155_00966 PF01790 Prolipoprotein diacylglyceryl transferase J155_00967 PF00303 Thymidylate synthase J155_00969 PF00186 Dihydrofolate reductase J155_00970 PF00158 Sigma-54 interaction domain J155_00971 PF08028 Acyl-CoA dehydrogenase, C-terminal domain J155_00971 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J155_00972 PF00005 ABC transporter J155_00973 PF00528 Binding-protein-dependent transport system inner membrane component J155_00975 PF00296 Luciferase-like monooxygenase J155_00976 PF03358 NADPH-dependent FMN reductase J155_00980 PF00296 Luciferase-like monooxygenase J155_00981 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J155_00982 PF00528 Binding-protein-dependent transport system inner membrane component J155_00985 PF00005 ABC transporter J155_00985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J155_00986 PF00149 Calcineurin-like phosphoesterase J155_00987 PF04379 ApaG domain J155_00988 PF00398 Ribosomal RNA adenine dimethylase J155_00989 PF04166 Pyridoxal phosphate biosynthetic protein PdxA J155_00990 PF00639 PPIC-type PPIASE domain J155_00990 PF09312 SurA N-terminal domain J155_00991 PF04453 LPS transport system D J155_00991 PF03968 OstA-like protein J155_00994 PF00850 Histone deacetylase domain J155_00995 PF01923 Cobalamin adenosyltransferase J155_00997 PF01494 FAD binding domain J155_00998 PF01494 FAD binding domain J155_01002 PF07729 FCD domain J155_01002 PF00392 Bacterial regulatory proteins, gntR family J155_01003 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J155_01004 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J155_01004 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit J155_01005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_01005 PF03466 LysR substrate binding domain J155_01006 PF13193 AMP-binding enzyme C-terminal domain J155_01006 PF00501 AMP-binding enzyme J155_01007 PF00171 Aldehyde dehydrogenase family J155_01008 PF00378 Enoyl-CoA hydratase/isomerase J155_01012 PF08450 SMP-30/Gluconolactonase/LRE-like region J155_01013 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J155_01013 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J155_01014 PF01728 FtsJ-like methyltransferase J155_01014 PF18125 RlmM ferredoxin-like domain J155_01017 PF00892 EamA-like transporter family J155_01018 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J155_01018 PF00749 tRNA synthetases class I (E and Q), catalytic domain J155_01021 PF00072 Response regulator receiver domain J155_01021 PF00990 Diguanylate cyclase, GGDEF domain J155_01022 PF00072 Response regulator receiver domain J155_01022 PF00512 His Kinase A (phospho-acceptor) domain J155_01022 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J155_01022 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_01022 PF00672 HAMP domain J155_01022 PF01627 Hpt domain J155_01023 PF00072 Response regulator receiver domain J155_01023 PF00196 Bacterial regulatory proteins, luxR family J155_01025 PF01625 Peptide methionine sulfoxide reductase J155_01027 PF00923 Transaldolase/Fructose-6-phosphate aldolase J155_01028 PF14760 Rnk N-terminus J155_01028 PF01272 Transcription elongation factor, GreA/GreB, C-term J155_01029 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_01029 PF03466 LysR substrate binding domain J155_01030 PF07992 Pyridine nucleotide-disulphide oxidoreductase J155_01030 PF13192 Thioredoxin domain J155_01031 PF10417 C-terminal domain of 1-Cys peroxiredoxin J155_01031 PF00578 AhpC/TSA family J155_01032 PF05175 Methyltransferase small domain J155_01032 PF17827 PrmC N-terminal domain J155_01033 PF00561 alpha/beta hydrolase fold J155_01035 PF00293 NUDIX domain J155_01036 PF01612 3'-5' exonuclease J155_01036 PF00476 DNA polymerase family A J155_01036 PF01367 5'-3' exonuclease, C-terminal SAM fold J155_01036 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J155_01042 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J155_01042 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J155_01042 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J155_01047 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J155_01048 PF02233 NAD(P) transhydrogenase beta subunit J155_01051 PF01063 Amino-transferase class IV J155_01052 PF04151 Bacterial pre-peptidase C-terminal domain J155_01052 PF00082 Subtilase family J155_01053 PF00082 Subtilase family J155_01053 PF04151 Bacterial pre-peptidase C-terminal domain J155_01054 PF04151 Bacterial pre-peptidase C-terminal domain J155_01054 PF00082 Subtilase family J155_01055 PF04073 Aminoacyl-tRNA editing domain J155_01057 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain J155_01057 PF17189 Glycosyl hydrolase family 30 beta sandwich domain J155_01058 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain J155_01058 PF17189 Glycosyl hydrolase family 30 beta sandwich domain J155_01060 PF03358 NADPH-dependent FMN reductase J155_01061 PF03631 Virulence factor BrkB J155_01062 PF08534 Redoxin J155_01063 PF00708 Acylphosphatase J155_01065 PF03976 Polyphosphate kinase 2 (PPK2) J155_01066 PF00994 Probable molybdopterin binding domain J155_01068 PF00472 RF-1 domain J155_01068 PF03462 PCRF domain J155_01069 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J155_01069 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J155_01069 PF01488 Shikimate / quinate 5-dehydrogenase J155_01071 PF03550 Outer membrane lipoprotein LolB J155_01072 PF00288 GHMP kinases N terminal domain J155_01072 PF08544 GHMP kinases C terminal J155_01074 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J155_01074 PF14572 Phosphoribosyl synthetase-associated domain J155_01075 PF14693 Ribosomal protein TL5, C-terminal domain J155_01075 PF01386 Ribosomal L25p family J155_01076 PF01195 Peptidyl-tRNA hydrolase J155_01077 PF01926 50S ribosome-binding GTPase J155_01077 PF06071 Protein of unknown function (DUF933) J155_01081 PF03143 Elongation factor Tu C-terminal domain J155_01081 PF03144 Elongation factor Tu domain 2 J155_01081 PF00009 Elongation factor Tu GTP binding domain J155_01083 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J155_01084 PF02357 Transcription termination factor nusG J155_01084 PF00467 KOW motif J155_01085 PF03946 Ribosomal protein L11, N-terminal domain J155_01085 PF00298 Ribosomal protein L11, RNA binding domain J155_01086 PF00687 Ribosomal protein L1p/L10e family J155_01087 PF00466 Ribosomal protein L10 J155_01088 PF16320 Ribosomal protein L7/L12 dimerisation domain J155_01088 PF00542 Ribosomal protein L7/L12 C-terminal domain J155_01090 PF04563 RNA polymerase beta subunit J155_01090 PF04560 RNA polymerase Rpb2, domain 7 J155_01090 PF04561 RNA polymerase Rpb2, domain 2 J155_01090 PF04565 RNA polymerase Rpb2, domain 3 J155_01090 PF00562 RNA polymerase Rpb2, domain 6 J155_01090 PF10385 RNA polymerase beta subunit external 1 domain J155_01091 PF05000 RNA polymerase Rpb1, domain 4 J155_01091 PF04983 RNA polymerase Rpb1, domain 3 J155_01091 PF00623 RNA polymerase Rpb1, domain 2 J155_01091 PF04997 RNA polymerase Rpb1, domain 1 J155_01091 PF04998 RNA polymerase Rpb1, domain 5 J155_01092 PF00164 Ribosomal protein S12/S23 J155_01093 PF00177 Ribosomal protein S7p/S5e J155_01094 PF03144 Elongation factor Tu domain 2 J155_01094 PF03764 Elongation factor G, domain IV J155_01094 PF14492 Elongation Factor G, domain II J155_01094 PF00009 Elongation factor Tu GTP binding domain J155_01094 PF00679 Elongation factor G C-terminus J155_01095 PF03144 Elongation factor Tu domain 2 J155_01095 PF03143 Elongation factor Tu C-terminal domain J155_01095 PF00009 Elongation factor Tu GTP binding domain J155_01096 PF00338 Ribosomal protein S10p/S20e J155_01097 PF00297 Ribosomal protein L3 J155_01098 PF00573 Ribosomal protein L4/L1 family J155_01099 PF00276 Ribosomal protein L23 J155_01100 PF03947 Ribosomal Proteins L2, C-terminal domain J155_01100 PF00181 Ribosomal Proteins L2, RNA binding domain J155_01101 PF00203 Ribosomal protein S19 J155_01102 PF00237 Ribosomal protein L22p/L17e J155_01103 PF00189 Ribosomal protein S3, C-terminal domain J155_01103 PF07650 KH domain J155_01104 PF00252 Ribosomal protein L16p/L10e J155_01105 PF00831 Ribosomal L29 protein J155_01106 PF00366 Ribosomal protein S17 J155_01107 PF00238 Ribosomal protein L14p/L23e J155_01108 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J155_01108 PF00467 KOW motif J155_01109 PF00281 Ribosomal protein L5 J155_01109 PF00673 ribosomal L5P family C-terminus J155_01110 PF00253 Ribosomal protein S14p/S29e J155_01111 PF00410 Ribosomal protein S8 J155_01112 PF00347 Ribosomal protein L6 J155_01113 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J155_01114 PF00333 Ribosomal protein S5, N-terminal domain J155_01114 PF03719 Ribosomal protein S5, C-terminal domain J155_01115 PF00327 Ribosomal protein L30p/L7e J155_01116 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J155_01117 PF00344 SecY translocase J155_01118 PF00416 Ribosomal protein S13/S18 J155_01119 PF00411 Ribosomal protein S11 J155_01120 PF01479 S4 domain J155_01120 PF00163 Ribosomal protein S4/S9 N-terminal domain J155_01121 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J155_01121 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J155_01121 PF01000 RNA polymerase Rpb3/RpoA insert domain J155_01122 PF01196 Ribosomal protein L17 J155_01123 PF02600 Disulfide bond formation protein DsbB J155_01125 PF01474 Class-II DAHP synthetase family J155_01127 PF01425 Amidase J155_01130 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J155_01131 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J155_01131 PF00056 lactate/malate dehydrogenase, NAD binding domain J155_01132 PF02798 Glutathione S-transferase, N-terminal domain J155_01132 PF00043 Glutathione S-transferase, C-terminal domain J155_01134 PF07992 Pyridine nucleotide-disulphide oxidoreductase J155_01134 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J155_01135 PF00107 Zinc-binding dehydrogenase J155_01135 PF08240 Alcohol dehydrogenase GroES-like domain J155_01136 PF05736 OprF membrane domain J155_01136 PF00691 OmpA family J155_01138 PF00849 RNA pseudouridylate synthase J155_01140 PF00155 Aminotransferase class I and II J155_01142 PF00528 Binding-protein-dependent transport system inner membrane component J155_01143 PF00528 Binding-protein-dependent transport system inner membrane component J155_01144 PF17850 CysA C-terminal regulatory domain J155_01144 PF00005 ABC transporter J155_01144 PF12857 TOBE-like domain J155_01146 PF00107 Zinc-binding dehydrogenase J155_01146 PF08240 Alcohol dehydrogenase GroES-like domain J155_01148 PF05506 Domain of unknown function (DUF756) J155_01148 PF04185 Phosphoesterase family J155_01149 PF10459 Peptidase S46 J155_01150 PF10459 Peptidase S46 J155_01151 PF00300 Histidine phosphatase superfamily (branch 1) J155_01152 PF08245 Mur ligase middle domain J155_01152 PF02875 Mur ligase family, glutamate ligase domain J155_01155 PF00156 Phosphoribosyl transferase domain J155_01156 PF04305 Protein of unknown function (DUF455) J155_01160 PF00149 Calcineurin-like phosphoesterase J155_01162 PF01569 PAP2 superfamily J155_01163 PF13439 Glycosyltransferase Family 4 J155_01163 PF00534 Glycosyl transferases group 1 J155_01164 PF02541 Ppx/GppA phosphatase family J155_01165 PF02503 Polyphosphate kinase middle domain J155_01165 PF13089 Polyphosphate kinase N-terminal domain J155_01165 PF13090 Polyphosphate kinase C-terminal domain 2 J155_01165 PF17941 Polyphosphate kinase C-terminal domain 1 J155_01166 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_01166 PF00989 PAS fold J155_01166 PF00512 His Kinase A (phospho-acceptor) domain J155_01166 PF11808 Phosphate regulon sensor protein PhoR J155_01167 PF00072 Response regulator receiver domain J155_01167 PF00486 Transcriptional regulatory protein, C terminal J155_01168 PF01435 Peptidase family M48 J155_01168 PF13181 Tetratricopeptide repeat J155_01169 PF00462 Glutaredoxin J155_01171 PF00180 Isocitrate/isopropylmalate dehydrogenase J155_01177 PF13276 HTH-like domain J155_01177 PF00665 Integrase core domain J155_01177 PF13333 Integrase core domain J155_01178 PF01527 Transposase J155_01201 PF01527 Transposase J155_01202 PF13333 Integrase core domain J155_01202 PF13276 HTH-like domain J155_01202 PF00665 Integrase core domain J155_01205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_01205 PF00512 His Kinase A (phospho-acceptor) domain J155_01205 PF00989 PAS fold J155_01208 PF05697 Bacterial trigger factor protein (TF) J155_01208 PF05698 Bacterial trigger factor protein (TF) C-terminus J155_01209 PF00574 Clp protease J155_01210 PF06689 ClpX C4-type zinc finger J155_01210 PF07724 AAA domain (Cdc48 subfamily) J155_01210 PF10431 C-terminal, D2-small domain, of ClpB protein J155_01211 PF02190 ATP-dependent protease La (LON) substrate-binding domain J155_01211 PF00004 ATPase family associated with various cellular activities (AAA) J155_01211 PF05362 Lon protease (S16) C-terminal proteolytic domain J155_01212 PF00216 Bacterial DNA-binding protein J155_01218 PF05257 CHAP domain J155_01218 PF01476 LysM domain J155_01219 PF16123 Hydroxyacylglutathione hydrolase C-terminus J155_01219 PF00753 Metallo-beta-lactamase superfamily J155_01221 PF00075 RNase H J155_01222 PF00929 Exonuclease J155_01226 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J155_01228 PF12706 Beta-lactamase superfamily domain J155_01228 PF00753 Metallo-beta-lactamase superfamily J155_01229 PF04055 Radical SAM superfamily J155_01229 PF06463 Molybdenum Cofactor Synthesis C J155_01230 PF01967 MoaC family J155_01231 PF02597 ThiS family J155_01232 PF02391 MoaE protein J155_01235 PF01527 Transposase J155_01236 PF00665 Integrase core domain J155_01236 PF13333 Integrase core domain J155_01236 PF13276 HTH-like domain J155_01242 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding J155_01242 PF12170 DNA polymerase III tau subunit V interacting with alpha J155_01242 PF12169 DNA polymerase III subunits gamma and tau domain III J155_01243 PF02575 YbaB/EbfC DNA-binding family J155_01244 PF02132 RecR protein J155_01244 PF13662 Toprim domain J155_01245 PF01230 HIT domain J155_01247 PF01841 Transglutaminase-like superfamily J155_01247 PF13559 Domain of unknown function (DUF4129) J155_01247 PF11992 Domain of unknown function (DUF3488) J155_01249 PF07726 ATPase family associated with various cellular activities (AAA) J155_01249 PF17863 AAA lid domain J155_01253 PF02545 Maf-like protein J155_01254 PF02620 Large ribosomal RNA subunit accumulation protein YceD J155_01255 PF01783 Ribosomal L32p protein family J155_01256 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J155_01256 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J155_01258 PF00698 Acyl transferase domain J155_01260 PF00550 Phosphopantetheine attachment site J155_01261 PF02801 Beta-ketoacyl synthase, C-terminal domain J155_01261 PF00109 Beta-ketoacyl synthase, N-terminal domain J155_01262 PF04715 Anthranilate synthase component I, N terminal region J155_01262 PF00425 chorismate binding enzyme J155_01263 PF02618 YceG-like family J155_01264 PF09115 DNA polymerase III, delta subunit, C terminal J155_01268 PF00158 Sigma-54 interaction domain J155_01268 PF02954 Bacterial regulatory protein, Fis family J155_01268 PF06506 Propionate catabolism activator J155_01270 PF00285 Citrate synthase, C-terminal domain J155_01271 PF00694 Aconitase C-terminal domain J155_01271 PF00330 Aconitase family (aconitate hydratase) J155_01272 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH J155_01274 PF04303 PrpF protein J155_01275 PF07715 TonB-dependent Receptor Plug Domain J155_01275 PF00593 TonB dependent receptor J155_01277 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain J155_01277 PF07703 Alpha-2-macroglobulin bait region domain J155_01277 PF00207 Alpha-2-macroglobulin family J155_01277 PF01835 MG2 domain J155_01277 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain J155_01277 PF17962 Bacterial macroglobulin domain 6 J155_01277 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain J155_01277 PF11974 Bacterial alpha-2-macroglobulin MG3 domain J155_01280 PF00905 Penicillin binding protein transpeptidase domain J155_01280 PF00912 Transglycosylase J155_01280 PF06832 Penicillin-Binding Protein C-terminus Family J155_01282 PF08534 Redoxin J155_01284 PF01556 DnaJ C terminal domain J155_01284 PF00226 DnaJ domain J155_01286 PF00072 Response regulator receiver domain J155_01288 PF01145 SPFH domain / Band 7 family J155_01288 PF12221 Bacterial membrane protein N terminal J155_01289 PF01145 SPFH domain / Band 7 family J155_01291 PF00709 Adenylosuccinate synthetase J155_01292 PF01433 Peptidase family M1 domain J155_01292 PF11838 ERAP1-like C-terminal domain J155_01295 PF00440 Bacterial regulatory proteins, tetR family J155_01308 PF00300 Histidine phosphatase superfamily (branch 1) J155_01308 PF13456 Reverse transcriptase-like J155_01309 PF01256 Carbohydrate kinase J155_01311 PF00723 Glycosyl hydrolases family 15 J155_01313 PF17678 Glycosyl hydrolase family 92 N-terminal domain J155_01313 PF07971 Glycosyl hydrolase family 92 J155_01317 PF07992 Pyridine nucleotide-disulphide oxidoreductase J155_01321 PF17755 UvrA DNA-binding domain J155_01322 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J155_01322 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J155_01323 PF00941 FAD binding domain in molybdopterin dehydrogenase J155_01323 PF03450 CO dehydrogenase flavoprotein C-terminal domain J155_01324 PF00111 2Fe-2S iron-sulfur cluster binding domain J155_01324 PF01799 [2Fe-2S] binding domain J155_01331 PF01726 LexA DNA binding domain J155_01331 PF00717 Peptidase S24-like J155_01334 PF07733 Bacterial DNA polymerase III alpha NTPase domain J155_01334 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J155_01334 PF14579 Helix-hairpin-helix motif J155_01334 PF02811 PHP domain J155_01335 PF00326 Prolyl oligopeptidase family J155_01337 PF03169 OPT oligopeptide transporter protein J155_01340 PF00326 Prolyl oligopeptidase family J155_01340 PF07676 WD40-like Beta Propeller Repeat J155_01340 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J155_01343 PF12833 Helix-turn-helix domain J155_01343 PF02311 AraC-like ligand binding domain J155_01348 PF06628 Catalase-related immune-responsive J155_01348 PF00199 Catalase J155_01348 PF18011 C-terminal domain found in long catalases J155_01349 PF00248 Aldo/keto reductase family J155_01350 PF00135 Carboxylesterase family J155_01351 PF02347 Glycine cleavage system P-protein J155_01354 PF07690 Major Facilitator Superfamily J155_01357 PF08019 Phosphoethanolamine transferase EptA/EptB J155_01357 PF00884 Sulfatase J155_01360 PF00486 Transcriptional regulatory protein, C terminal J155_01360 PF00072 Response regulator receiver domain J155_01361 PF00512 His Kinase A (phospho-acceptor) domain J155_01361 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_01361 PF08521 Two-component sensor kinase N-terminal J155_01363 PF03776 Septum formation topological specificity factor MinE J155_01364 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J155_01365 PF05209 Septum formation inhibitor MinC, N-terminal domain J155_01365 PF03775 Septum formation inhibitor MinC, C-terminal domain J155_01367 PF07730 Histidine kinase J155_01368 PF00196 Bacterial regulatory proteins, luxR family J155_01368 PF00072 Response regulator receiver domain J155_01371 PF00730 HhH-GPD superfamily base excision DNA repair protein J155_01376 PF02222 ATP-grasp domain J155_01378 PF04377 Arginine-tRNA-protein transferase, C terminus J155_01378 PF04376 Arginine-tRNA-protein transferase, N terminus J155_01384 PF00378 Enoyl-CoA hydratase/isomerase J155_01387 PF17760 UvrA interaction domain J155_01387 PF17755 UvrA DNA-binding domain J155_01387 PF00005 ABC transporter J155_01388 PF00829 Ribosomal prokaryotic L21 protein J155_01389 PF01016 Ribosomal L27 protein J155_01390 PF01926 50S ribosome-binding GTPase J155_01390 PF01018 GTP1/OBG J155_01391 PF01649 Ribosomal protein S20 J155_01392 PF03023 Lipid II flippase MurJ J155_01393 PF01687 Riboflavin kinase J155_01393 PF06574 FAD synthetase J155_01394 PF08264 Anticodon-binding domain of tRNA J155_01394 PF00133 tRNA synthetases class I (I, L, M and V) J155_01394 PF06827 Zinc finger found in FPG and IleRS J155_01395 PF01252 Signal peptidase (SPase) II J155_01396 PF02401 LytB protein J155_01398 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J155_01398 PF06481 COX Aromatic Rich Motif J155_01399 PF00115 Cytochrome C and Quinol oxidase polypeptide I J155_01400 PF00510 Cytochrome c oxidase subunit III J155_01401 PF03626 Prokaryotic Cytochrome C oxidase subunit IV J155_01403 PF18073 Rubredoxin metal binding domain J155_01404 PF05656 Protein of unknown function (DUF805) J155_01406 PF12833 Helix-turn-helix domain J155_01407 PF00183 Hsp90 protein J155_01407 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_01409 PF01740 STAS domain J155_01409 PF08678 Rsbr N terminal J155_01410 PF01740 STAS domain J155_01411 PF13581 Histidine kinase-like ATPase domain J155_01413 PF00072 Response regulator receiver domain J155_01413 PF01627 Hpt domain J155_01413 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_01413 PF17149 Periplasmic sensor domain found in signal transduction proteins J155_01413 PF00512 His Kinase A (phospho-acceptor) domain J155_01413 PF00672 HAMP domain J155_01414 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_01414 PF08448 PAS fold J155_01414 PF13188 PAS domain J155_01414 PF00072 Response regulator receiver domain J155_01414 PF00512 His Kinase A (phospho-acceptor) domain J155_01415 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J155_01415 PF04616 Glycosyl hydrolases family 43 J155_01416 PF00593 TonB dependent receptor J155_01416 PF07715 TonB-dependent Receptor Plug Domain J155_01417 PF00085 Thioredoxin J155_01418 PF07237 Protein of unknown function (DUF1428) J155_01419 PF02702 Osmosensitive K+ channel His kinase sensor domain J155_01419 PF00512 His Kinase A (phospho-acceptor) domain J155_01419 PF13492 GAF domain J155_01419 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_01419 PF13493 Domain of unknown function (DUF4118) J155_01420 PF01339 CheB methylesterase J155_01421 PF03705 CheR methyltransferase, all-alpha domain J155_01421 PF01739 CheR methyltransferase, SAM binding domain J155_01422 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J155_01422 PF00512 His Kinase A (phospho-acceptor) domain J155_01422 PF01627 Hpt domain J155_01422 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_01422 PF00072 Response regulator receiver domain J155_01422 PF00672 HAMP domain J155_01423 PF00072 Response regulator receiver domain J155_01423 PF13426 PAS domain J155_01423 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_01424 PF00072 Response regulator receiver domain J155_01425 PF00722 Glycosyl hydrolases family 16 J155_01426 PF06964 Alpha-L-arabinofuranosidase C-terminal domain J155_01427 PF01263 Aldose 1-epimerase J155_01428 PF01578 Cytochrome C assembly protein J155_01429 PF02881 SRP54-type protein, helical bundle domain J155_01429 PF00448 SRP54-type protein, GTPase domain J155_01429 PF02978 Signal peptide binding domain J155_01430 PF03060 Nitronate monooxygenase J155_01431 PF01063 Amino-transferase class IV J155_01432 PF00886 Ribosomal protein S16 J155_01433 PF01782 RimM N-terminal domain J155_01433 PF05239 PRC-barrel domain J155_01434 PF01746 tRNA (Guanine-1)-methyltransferase J155_01435 PF01245 Ribosomal protein L19 J155_01436 PF01554 MatE J155_01437 PF01554 MatE J155_01440 PF01479 S4 domain J155_01441 PF00141 Peroxidase J155_01443 PF05190 MutS family domain IV J155_01443 PF00488 MutS domain V J155_01443 PF05192 MutS domain III J155_01443 PF05188 MutS domain II J155_01443 PF01624 MutS domain I J155_01446 PF03527 RHS protein J155_01446 PF05593 RHS Repeat J155_01450 PF02837 Glycosyl hydrolases family 2, sugar binding domain J155_01450 PF16355 Domain of unknown function (DUF4982) J155_01450 PF00703 Glycosyl hydrolases family 2 J155_01450 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J155_01450 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J155_01451 PF07745 Glycosyl hydrolase family 53 J155_01453 PF09856 Predicted transcriptional regulator (DUF2083) J155_01453 PF06114 IrrE N-terminal-like domain J155_01453 PF01381 Helix-turn-helix J155_01454 PF00171 Aldehyde dehydrogenase family J155_01455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J155_01455 PF02770 Acyl-CoA dehydrogenase, middle domain J155_01455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J155_01456 PF00378 Enoyl-CoA hydratase/isomerase J155_01457 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J155_01457 PF00378 Enoyl-CoA hydratase/isomerase J155_01457 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J155_01458 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J155_01458 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J155_01459 PF01545 Cation efflux family J155_01460 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J155_01460 PF00378 Enoyl-CoA hydratase/isomerase J155_01460 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J155_01461 PF08281 Sigma-70, region 4 J155_01461 PF04542 Sigma-70 region 2 J155_01463 PF13180 PDZ domain J155_01464 PF06421 GTP-binding protein LepA C-terminus J155_01464 PF03144 Elongation factor Tu domain 2 J155_01464 PF00009 Elongation factor Tu GTP binding domain J155_01464 PF00679 Elongation factor G C-terminus J155_01465 PF10502 Signal peptidase, peptidase S26 J155_01467 PF00035 Double-stranded RNA binding motif J155_01467 PF14622 Ribonuclease-III-like J155_01468 PF07650 KH domain J155_01468 PF01926 50S ribosome-binding GTPase J155_01469 PF02565 Recombination protein O C terminal J155_01469 PF11967 Recombination protein O N terminal J155_01471 PF05958 tRNA (Uracil-5-)-methyltransferase J155_01473 PF01323 DSBA-like thioredoxin domain J155_01474 PF01593 Flavin containing amine oxidoreductase J155_01475 PF04244 Deoxyribodipyrimidine photo-lyase-related protein J155_01476 PF00933 Glycosyl hydrolase family 3 N terminal domain J155_01478 PF01048 Phosphorylase superfamily J155_01479 PF00313 'Cold-shock' DNA-binding domain J155_01480 PF01494 FAD binding domain J155_01482 PF08494 DEAD/H associated J155_01482 PF00271 Helicase conserved C-terminal domain J155_01482 PF00270 DEAD/DEAH box helicase J155_01483 PF01068 ATP dependent DNA ligase domain J155_01483 PF04675 DNA ligase N terminus J155_01483 PF04679 ATP dependent DNA ligase C terminal region J155_01485 PF04679 ATP dependent DNA ligase C terminal region J155_01485 PF01068 ATP dependent DNA ligase domain J155_01485 PF04675 DNA ligase N terminus J155_01488 PF00072 Response regulator receiver domain J155_01488 PF00990 Diguanylate cyclase, GGDEF domain J155_01491 PF00108 Thiolase, N-terminal domain J155_01491 PF02803 Thiolase, C-terminal domain J155_01492 PF12951 Passenger-associated-transport-repeat J155_01492 PF03797 Autotransporter beta-domain J155_01492 PF00082 Subtilase family J155_01493 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain J155_01493 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J155_01495 PF01863 Protein of unknown function DUF45 J155_01496 PF07043 Protein of unknown function (DUF1328) J155_01498 PF01258 Prokaryotic dksA/traR C4-type zinc finger J155_01502 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J155_01504 PF03831 PhnA domain J155_01504 PF08274 PhnA Zinc-Ribbon J155_01505 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J155_01506 PF07690 Major Facilitator Superfamily J155_01513 PF09924 Uncharacterised conserved protein (DUF2156) J155_01513 PF03706 Lysylphosphatidylglycerol synthase TM region J155_01516 PF01042 Endoribonuclease L-PSP J155_01525 PF04545 Sigma-70, region 4 J155_01525 PF04542 Sigma-70 region 2 J155_01528 PF04060 Putative Fe-S cluster J155_01530 PF09334 tRNA synthetases class I (M) J155_01530 PF01588 Putative tRNA binding domain J155_01533 PF13732 Domain of unknown function (DUF4162) J155_01533 PF00005 ABC transporter J155_01534 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J155_01535 PF00324 Amino acid permease J155_01536 PF02574 Homocysteine S-methyltransferase J155_01538 PF02592 Putative vitamin uptake transporter J155_01542 PF03551 Transcriptional regulator PadR-like family J155_01549 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J155_01550 PF14579 Helix-hairpin-helix motif J155_01550 PF02811 PHP domain J155_01550 PF01336 OB-fold nucleic acid binding domain J155_01550 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J155_01550 PF07733 Bacterial DNA polymerase III alpha NTPase domain J155_01551 PF01351 Ribonuclease HII J155_01552 PF02684 Lipid-A-disaccharide synthetase J155_01553 PF00132 Bacterial transferase hexapeptide (six repeats) J155_01553 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 J155_01554 PF07977 FabA-like domain J155_01555 PF00132 Bacterial transferase hexapeptide (six repeats) J155_01555 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD J155_01557 PF07244 Surface antigen variable number repeat J155_01557 PF01103 Surface antigen J155_01558 PF02163 Peptidase family M50 J155_01558 PF17820 PDZ domain J155_01559 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J155_01559 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J155_01559 PF13288 DXP reductoisomerase C-terminal domain J155_01561 PF01255 Putative undecaprenyl diphosphate synthase J155_01562 PF01765 Ribosome recycling factor J155_01563 PF00696 Amino acid kinase family J155_01564 PF00072 Response regulator receiver domain J155_01564 PF00990 Diguanylate cyclase, GGDEF domain J155_01565 PF00889 Elongation factor TS J155_01566 PF00318 Ribosomal protein S2 J155_01573 PF00557 Metallopeptidase family M24 J155_01574 PF01966 HD domain J155_01574 PF08335 GlnD PII-uridylyltransferase J155_01574 PF01909 Nucleotidyltransferase domain J155_01575 PF00132 Bacterial transferase hexapeptide (six repeats) J155_01575 PF14602 Hexapeptide repeat of succinyl-transferase J155_01575 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal J155_01576 PF03960 ArsC family J155_01577 PF01546 Peptidase family M20/M25/M40 J155_01577 PF07687 Peptidase dimerisation domain J155_01578 PF13537 Glutamine amidotransferase domain J155_01578 PF00733 Asparagine synthase J155_01580 PF07715 TonB-dependent Receptor Plug Domain J155_01580 PF00593 TonB dependent receptor J155_01582 PF01804 Penicillin amidase J155_01583 PF00210 Ferritin-like domain J155_01584 PF05724 Thiopurine S-methyltransferase (TPMT) J155_01586 PF03989 DNA gyrase C-terminal domain, beta-propeller J155_01586 PF00521 DNA gyrase/topoisomerase IV, subunit A J155_01589 PF02321 Outer membrane efflux protein J155_01590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J155_01590 PF00529 HlyD membrane-fusion protein of T1SS J155_01591 PF07690 Major Facilitator Superfamily J155_01593 PF01915 Glycosyl hydrolase family 3 C-terminal domain J155_01593 PF14310 Fibronectin type III-like domain J155_01593 PF00933 Glycosyl hydrolase family 3 N terminal domain J155_01595 PF00854 POT family J155_01600 PF12802 MarR family J155_01601 PF01432 Peptidase family M3 J155_01602 PF00255 Glutathione peroxidase J155_01603 PF00970 Oxidoreductase FAD-binding domain J155_01603 PF00175 Oxidoreductase NAD-binding domain J155_01604 PF00005 ABC transporter J155_01605 PF05681 Fumarate hydratase (Fumerase) J155_01605 PF05683 Fumarase C-terminus J155_01607 PF00484 Carbonic anhydrase J155_01608 PF02253 Phospholipase A1 J155_01610 PF00313 'Cold-shock' DNA-binding domain J155_01613 PF00899 ThiF family J155_01614 PF01026 TatD related DNase J155_01617 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J155_01617 PF02770 Acyl-CoA dehydrogenase, middle domain J155_01617 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J155_01619 PF00043 Glutathione S-transferase, C-terminal domain J155_01619 PF02798 Glutathione S-transferase, N-terminal domain J155_01620 PF00733 Asparagine synthase J155_01620 PF13537 Glutamine amidotransferase domain J155_01621 PF03358 NADPH-dependent FMN reductase J155_01622 PF00772 DnaB-like helicase N terminal domain J155_01622 PF03796 DnaB-like helicase C terminal domain J155_01623 PF03441 FAD binding domain of DNA photolyase J155_01623 PF00875 DNA photolyase J155_01624 PF05736 OprF membrane domain J155_01624 PF00691 OmpA family J155_01626 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_01626 PF03466 LysR substrate binding domain J155_01629 PF00529 HlyD membrane-fusion protein of T1SS J155_01629 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J155_01630 PF00873 AcrB/AcrD/AcrF family J155_01631 PF00106 short chain dehydrogenase J155_01632 PF02321 Outer membrane efflux protein J155_01633 PF08448 PAS fold J155_01633 PF00990 Diguanylate cyclase, GGDEF domain J155_01635 PF00990 Diguanylate cyclase, GGDEF domain J155_01652 PF01527 Transposase J155_01661 PF00082 Subtilase family J155_01662 PF01668 SmpB protein J155_01663 PF03364 Polyketide cyclase / dehydrase and lipid transport J155_01664 PF03658 RnfH family Ubiquitin J155_01665 PF04355 SmpA / OmlA family J155_01666 PF01475 Ferric uptake regulator family J155_01667 PF02463 RecF/RecN/SMC N terminal domain J155_01668 PF01628 HrcA protein C terminal domain J155_01668 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding J155_01669 PF01025 GrpE J155_01670 PF00012 Hsp70 protein J155_01671 PF00226 DnaJ domain J155_01671 PF01556 DnaJ C terminal domain J155_01671 PF00684 DnaJ central domain J155_01673 PF08543 Phosphomethylpyrimidine kinase J155_01678 PF03412 Peptidase C39 family J155_01678 PF00005 ABC transporter J155_01678 PF00664 ABC transporter transmembrane region J155_01679 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_01679 PF03466 LysR substrate binding domain J155_01680 PF00664 ABC transporter transmembrane region J155_01680 PF00005 ABC transporter J155_01681 PF01205 Uncharacterized protein family UPF0029 J155_01682 PF03641 Possible lysine decarboxylase J155_01683 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J155_01683 PF07992 Pyridine nucleotide-disulphide oxidoreductase J155_01684 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J155_01684 PF00364 Biotin-requiring enzyme J155_01684 PF02817 e3 binding domain J155_01685 PF16078 2-oxoglutarate dehydrogenase N-terminus J155_01685 PF02779 Transketolase, pyrimidine binding domain J155_01685 PF16870 2-oxoglutarate dehydrogenase C-terminal J155_01685 PF00676 Dehydrogenase E1 component J155_01687 PF08007 Cupin superfamily protein J155_01689 PF00206 Lyase J155_01689 PF08328 Adenylosuccinate lyase C-terminal J155_01691 PF03471 Transporter associated domain J155_01691 PF01595 Cyclin M transmembrane N-terminal domain J155_01691 PF00571 CBS domain J155_01692 PF10415 Fumarase C C-terminus J155_01692 PF00206 Lyase J155_01697 PF00005 ABC transporter J155_01698 PF00392 Bacterial regulatory proteins, gntR family J155_01700 PF00255 Glutathione peroxidase J155_01701 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J155_01701 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J155_01702 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J155_01702 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J155_01702 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J155_01703 PF04102 SlyX J155_01706 PF00356 Bacterial regulatory proteins, lacI family J155_01707 PF07690 Major Facilitator Superfamily J155_01708 PF00294 pfkB family carbohydrate kinase J155_01710 PF02607 B12 binding domain J155_01710 PF02965 Vitamin B12 dependent methionine synthase, activation domain J155_01710 PF02310 B12 binding domain J155_01710 PF00809 Pterin binding enzyme J155_01710 PF02574 Homocysteine S-methyltransferase J155_01711 PF02574 Homocysteine S-methyltransferase J155_01711 PF00809 Pterin binding enzyme J155_01712 PF01209 ubiE/COQ5 methyltransferase family J155_01713 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J155_01713 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J155_01713 PF02770 Acyl-CoA dehydrogenase, middle domain J155_01716 PF08461 Ribonuclease R winged-helix domain J155_01716 PF08206 Ribonuclease B OB domain J155_01716 PF00773 RNB domain J155_01716 PF00575 S1 RNA binding domain J155_01716 PF17876 Cold shock domain J155_01718 PF00588 SpoU rRNA Methylase family J155_01718 PF08032 RNA 2'-O ribose methyltransferase substrate binding J155_01719 PF07694 5TMR of 5TMR-LYT J155_01719 PF00990 Diguanylate cyclase, GGDEF domain J155_01720 PF00929 Exonuclease J155_01722 PF01895 PhoU domain J155_01723 PF00005 ABC transporter J155_01724 PF00528 Binding-protein-dependent transport system inner membrane component J155_01725 PF00528 Binding-protein-dependent transport system inner membrane component J155_01726 PF12849 PBP superfamily domain J155_01727 PF12849 PBP superfamily domain J155_01730 PF00484 Carbonic anhydrase J155_01731 PF01740 STAS domain J155_01731 PF00916 Sulfate permease family J155_01732 PF00633 Helix-hairpin-helix motif J155_01732 PF10576 Iron-sulfur binding domain of endonuclease III J155_01732 PF00730 HhH-GPD superfamily base excision DNA repair protein J155_01734 PF00378 Enoyl-CoA hydratase/isomerase J155_01735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J155_01735 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J155_01736 PF00293 NUDIX domain J155_01737 PF00581 Rhodanese-like domain J155_01744 PF10672 S-adenosylmethionine-dependent methyltransferase J155_01744 PF02926 THUMP domain J155_01744 PF01170 Putative RNA methylase family UPF0020 J155_01745 PF01513 ATP-NAD kinase J155_01749 PF08411 Exonuclease C-terminal J155_01749 PF00929 Exonuclease J155_01750 PF01494 FAD binding domain J155_01751 PF00266 Aminotransferase class-V J155_01753 PF06052 3-hydroxyanthranilic acid dioxygenase J155_01754 PF00484 Carbonic anhydrase J155_01763 PF00072 Response regulator receiver domain J155_01763 PF00196 Bacterial regulatory proteins, luxR family J155_01766 PF04299 Putative FMN-binding domain J155_01770 PF00152 tRNA synthetases class II (D, K and N) J155_01770 PF01336 OB-fold nucleic acid binding domain J155_01771 PF01521 Iron-sulphur cluster biosynthesis J155_01772 PF01250 Ribosomal protein S6 J155_01773 PF01084 Ribosomal protein S18 J155_01774 PF01281 Ribosomal protein L9, N-terminal domain J155_01774 PF03948 Ribosomal protein L9, C-terminal domain J155_01775 PF02463 RecF/RecN/SMC N terminal domain J155_01776 PF04354 ZipA, C-terminal FtsZ-binding domain J155_01778 PF00155 Aminotransferase class I and II J155_01779 PF00533 BRCA1 C Terminus (BRCT) domain J155_01779 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J155_01779 PF01653 NAD-dependent DNA ligase adenylation domain J155_01779 PF03120 NAD-dependent DNA ligase OB-fold domain J155_01779 PF12826 Helix-hairpin-helix motif J155_01780 PF00152 tRNA synthetases class II (D, K and N) J155_01782 PF01008 Initiation factor 2 subunit family J155_01783 PF00521 DNA gyrase/topoisomerase IV, subunit A J155_01783 PF03989 DNA gyrase C-terminal domain, beta-propeller J155_01784 PF13360 PQQ-like domain J155_01786 PF17391 Urocanase N-terminal domain J155_01786 PF17392 Urocanase C-terminal domain J155_01786 PF01175 Urocanase Rossmann-like domain J155_01788 PF00221 Aromatic amino acid lyase J155_01789 PF07969 Amidohydrolase family J155_01791 PF07702 UTRA domain J155_01791 PF00392 Bacterial regulatory proteins, gntR family J155_01797 PF01794 Ferric reductase like transmembrane component J155_01798 PF00174 Oxidoreductase molybdopterin binding domain J155_01799 PF00266 Aminotransferase class-V J155_01800 PF01817 Chorismate mutase type II J155_01800 PF01842 ACT domain J155_01800 PF00800 Prephenate dehydratase J155_01801 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J155_01803 PF03544 Gram-negative bacterial TonB protein C-terminal J155_01804 PF02403 Seryl-tRNA synthetase N-terminal domain J155_01804 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J155_01805 PF02525 Flavodoxin-like fold J155_01806 PF03466 LysR substrate binding domain J155_01806 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_01809 PF00672 HAMP domain J155_01809 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_01809 PF02203 Tar ligand binding domain homologue J155_01812 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_01812 PF13188 PAS domain J155_01812 PF08448 PAS fold J155_01812 PF00512 His Kinase A (phospho-acceptor) domain J155_01812 PF00072 Response regulator receiver domain J155_01813 PF00486 Transcriptional regulatory protein, C terminal J155_01813 PF00072 Response regulator receiver domain J155_01814 PF06745 KaiC J155_01815 PF13426 PAS domain J155_01815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_01815 PF00072 Response regulator receiver domain J155_01817 PF03918 Cytochrome C biogenesis protein J155_01818 PF08534 Redoxin J155_01819 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J155_01819 PF01578 Cytochrome C assembly protein J155_01820 PF03100 CcmE J155_01822 PF01578 Cytochrome C assembly protein J155_01823 PF00082 Subtilase family J155_01825 PF08281 Sigma-70, region 4 J155_01825 PF04542 Sigma-70 region 2 J155_01828 PF00034 Cytochrome c J155_01831 PF05523 WxcM-like, C-terminal J155_01835 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J155_01836 PF01943 Polysaccharide biosynthesis protein J155_01837 PF00535 Glycosyl transferase family 2 J155_01840 PF08241 Methyltransferase domain J155_01844 PF00534 Glycosyl transferases group 1 J155_01844 PF13579 Glycosyl transferase 4-like domain J155_01847 PF00005 ABC transporter J155_01848 PF00005 ABC transporter J155_01848 PF00664 ABC transporter transmembrane region J155_01849 PF07690 Major Facilitator Superfamily J155_01850 PF00296 Luciferase-like monooxygenase J155_01853 PF03471 Transporter associated domain J155_01853 PF01595 Cyclin M transmembrane N-terminal domain J155_01853 PF00571 CBS domain J155_01855 PF01384 Phosphate transporter family J155_01858 PF01751 Toprim domain J155_01858 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_01858 PF00986 DNA gyrase B subunit, carboxyl terminus J155_01858 PF00204 DNA gyrase B J155_01860 PF00117 Glutamine amidotransferase class-I J155_01860 PF06418 CTP synthase N-terminus J155_01861 PF00793 DAHP synthetase I family J155_01863 PF03952 Enolase, N-terminal domain J155_01863 PF00113 Enolase, C-terminal TIM barrel domain J155_01864 PF04977 Septum formation initiator J155_01865 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J155_01866 PF02542 YgbB family J155_01867 PF01142 tRNA pseudouridine synthase D (TruD) J155_01868 PF01713 Smr domain J155_01869 PF01975 Survival protein SurE J155_01871 PF09335 SNARE associated Golgi protein J155_01872 PF01551 Peptidase family M23 J155_01872 PF01476 LysM domain J155_01874 PF04430 Protein of unknown function (DUF498/DUF598) J155_01875 PF01985 CRS1 / YhbY (CRM) domain J155_01876 PF01728 FtsJ-like methyltransferase J155_01877 PF00004 ATPase family associated with various cellular activities (AAA) J155_01877 PF01434 Peptidase family M41 J155_01877 PF17862 AAA+ lid domain J155_01877 PF06480 FtsH Extracellular J155_01878 PF00809 Pterin binding enzyme J155_01880 PF17209 Hfq protein J155_01881 PF01926 50S ribosome-binding GTPase J155_01881 PF16360 GTP-binding GTPase Middle Region J155_01881 PF13167 GTP-binding GTPase N-terminal J155_01882 PF02464 Competence-damaged protein J155_01883 PF03109 ABC1 family J155_01884 PF00717 Peptidase S24-like J155_01884 PF01726 LexA DNA binding domain J155_01885 PF00154 recA bacterial DNA recombination protein J155_01886 PF02631 RecX family J155_01887 PF01411 tRNA synthetases class II (A) J155_01887 PF02272 DHHA1 domain J155_01887 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J155_01888 PF02599 Global regulator protein family J155_01890 PF13426 PAS domain J155_01890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_01890 PF08447 PAS fold J155_01891 PF17954 Quercetinase C-terminal cupin domain J155_01891 PF02678 Pirin J155_01892 PF03466 LysR substrate binding domain J155_01892 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_01897 PF08543 Phosphomethylpyrimidine kinase J155_01897 PF02581 Thiamine monophosphate synthase J155_01900 PF13638 PIN domain J155_01900 PF02562 PhoH-like protein J155_01901 PF00578 AhpC/TSA family J155_01904 PF00701 Dihydrodipicolinate synthetase family J155_01906 PF00037 4Fe-4S binding domain J155_01906 PF11953 Domain of unknown function (DUF3470) J155_01907 PF05035 2-keto-3-deoxy-galactonokinase J155_01908 PF08450 SMP-30/Gluconolactonase/LRE-like region J155_01909 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J155_01909 PF13378 Enolase C-terminal domain-like J155_01910 PF01081 KDPG and KHG aldolase J155_01912 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_01912 PF03466 LysR substrate binding domain J155_01915 PF03442 Carbohydrate binding domain X2 J155_01915 PF00942 Cellulose binding domain J155_01918 PF01055 Glycosyl hydrolases family 31 J155_01918 PF16338 Domain of unknown function (DUF4968) J155_01918 PF17137 Domain of unknown function (DUF5110) J155_01920 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J155_01920 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J155_01922 PF00083 Sugar (and other) transporter J155_01925 PF01520 N-acetylmuramoyl-L-alanine amidase J155_01926 PF02649 Type I GTP cyclohydrolase folE2 J155_01930 PF12626 Polymerase A arginine-rich C-terminus J155_01930 PF01743 Poly A polymerase head domain J155_01930 PF12627 Probable RNA and SrmB- binding site of polymerase A J155_01931 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J155_01932 PF02548 Ketopantoate hydroxymethyltransferase J155_01933 PF02569 Pantoate-beta-alanine ligase J155_01934 PF02261 Aspartate decarboxylase J155_01935 PF00342 Phosphoglucose isomerase J155_01939 PF00933 Glycosyl hydrolase family 3 N terminal domain J155_01939 PF01915 Glycosyl hydrolase family 3 C-terminal domain J155_01939 PF14310 Fibronectin type III-like domain J155_01940 PF00474 Sodium:solute symporter family J155_01941 PF01590 GAF domain J155_01941 PF00360 Phytochrome region J155_01941 PF00990 Diguanylate cyclase, GGDEF domain J155_01941 PF00563 EAL domain J155_01942 PF02013 Cellulose or protein binding domain J155_01942 PF00150 Cellulase (glycosyl hydrolase family 5) J155_01943 PF00072 Response regulator receiver domain J155_01945 PF04551 GcpE protein J155_01946 PF01569 PAP2 superfamily J155_01947 PF07690 Major Facilitator Superfamily J155_01948 PF01177 Asp/Glu/Hydantoin racemase J155_01949 PF00892 EamA-like transporter family J155_01950 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J155_01950 PF01565 FAD binding domain J155_01951 PF01180 Dihydroorotate dehydrogenase J155_01954 PF00171 Aldehyde dehydrogenase family J155_01957 PF00535 Glycosyl transferase family 2 J155_01958 PF01522 Polysaccharide deacetylase J155_01958 PF14883 Hypothetical glycosyl hydrolase family 13 J155_01960 PF08479 POTRA domain, ShlB-type J155_01960 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB J155_01960 PF17287 POTRA domain J155_01961 PF13332 Hemagglutinin repeat J155_01961 PF05594 Haemagluttinin repeat J155_01961 PF04829 Pre-toxin domain with VENN motif J155_01962 PF13332 Hemagglutinin repeat J155_01962 PF05594 Haemagluttinin repeat J155_01962 PF04829 Pre-toxin domain with VENN motif J155_01964 PF13332 Hemagglutinin repeat J155_01964 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain J155_01964 PF13018 Extended Signal Peptide of Type V secretion system J155_01964 PF05594 Haemagluttinin repeat J155_01964 PF05860 haemagglutination activity domain J155_01966 PF00742 Homoserine dehydrogenase J155_01966 PF03447 Homoserine dehydrogenase, NAD binding domain J155_01966 PF01842 ACT domain J155_01966 PF00696 Amino acid kinase family J155_01966 PF13840 ACT domain J155_01967 PF08544 GHMP kinases C terminal J155_01967 PF00288 GHMP kinases N terminal domain J155_01969 PF14821 Threonine synthase N terminus J155_01969 PF00291 Pyridoxal-phosphate dependent enzyme J155_01971 PF13545 Crp-like helix-turn-helix domain J155_01971 PF00027 Cyclic nucleotide-binding domain J155_01972 PF13393 Histidyl-tRNA synthetase J155_01972 PF03129 Anticodon binding domain J155_01974 PF01634 ATP phosphoribosyltransferase J155_01974 PF08029 HisG, C-terminal domain J155_01975 PF00815 Histidinol dehydrogenase J155_01976 PF00155 Aminotransferase class I and II J155_01977 PF00475 Imidazoleglycerol-phosphate dehydratase J155_01978 PF00117 Glutamine amidotransferase class-I J155_01979 PF00977 Histidine biosynthesis protein J155_01980 PF00977 Histidine biosynthesis protein J155_01981 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J155_01981 PF01502 Phosphoribosyl-AMP cyclohydrolase J155_01985 PF03079 ARD/ARD' family J155_01986 PF00596 Class II Aldolase and Adducin N-terminal domain J155_01987 PF13520 Amino acid permease J155_01988 PF13520 Amino acid permease J155_01990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J155_01990 PF01842 ACT domain J155_01990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J155_01991 PF01565 FAD binding domain J155_01991 PF02913 FAD linked oxidases, C-terminal domain J155_01995 PF09285 Elongation factor P, C-terminal J155_01995 PF08207 Elongation factor P (EF-P) KOW-like domain J155_01995 PF01132 Elongation factor P (EF-P) OB domain J155_01996 PF00106 short chain dehydrogenase J155_01997 PF00682 HMGL-like J155_01999 PF00378 Enoyl-CoA hydratase/isomerase J155_02001 PF07670 Nucleoside recognition J155_02001 PF07664 Ferrous iron transport protein B C terminus J155_02001 PF02421 Ferrous iron transport protein B J155_02004 PF00155 Aminotransferase class I and II J155_02005 PF03475 3-alpha domain J155_02005 PF03473 MOSC domain J155_02006 PF01113 Dihydrodipicolinate reductase, N-terminus J155_02006 PF05173 Dihydrodipicolinate reductase, C-terminus J155_02007 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J155_02007 PF00117 Glutamine amidotransferase class-I J155_02009 PF02142 MGS-like domain J155_02009 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J155_02009 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J155_02010 PF01272 Transcription elongation factor, GreA/GreB, C-term J155_02010 PF03449 Transcription elongation factor, N-terminal J155_02012 PF17768 RecJ OB domain J155_02012 PF01368 DHH family J155_02012 PF02272 DHHA1 domain J155_02020 PF00072 Response regulator receiver domain J155_02020 PF04397 LytTr DNA-binding domain J155_02021 PF03462 PCRF domain J155_02021 PF00472 RF-1 domain J155_02022 PF00152 tRNA synthetases class II (D, K and N) J155_02022 PF01336 OB-fold nucleic acid binding domain J155_02023 PF00072 Response regulator receiver domain J155_02024 PF00072 Response regulator receiver domain J155_02024 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_02024 PF00512 His Kinase A (phospho-acceptor) domain J155_02024 PF01627 Hpt domain J155_02025 PF00378 Enoyl-CoA hydratase/isomerase J155_02026 PF00501 AMP-binding enzyme J155_02026 PF13193 AMP-binding enzyme C-terminal domain J155_02028 PF00694 Aconitase C-terminal domain J155_02028 PF00330 Aconitase family (aconitate hydratase) J155_02031 PF11791 Aconitate B N-terminal domain J155_02031 PF00330 Aconitase family (aconitate hydratase) J155_02031 PF06434 Aconitate hydratase 2 N-terminus J155_02032 PF00561 alpha/beta hydrolase fold J155_02033 PF03707 Bacterial signalling protein N terminal repeat J155_02033 PF00990 Diguanylate cyclase, GGDEF domain J155_02033 PF00563 EAL domain J155_02034 PF00072 Response regulator receiver domain J155_02034 PF01339 CheB methylesterase J155_02035 PF03975 CheD chemotactic sensory transduction J155_02036 PF03705 CheR methyltransferase, all-alpha domain J155_02036 PF01739 CheR methyltransferase, SAM binding domain J155_02037 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_02037 PF00672 HAMP domain J155_02037 PF02203 Tar ligand binding domain homologue J155_02038 PF00672 HAMP domain J155_02038 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_02038 PF02203 Tar ligand binding domain homologue J155_02039 PF02203 Tar ligand binding domain homologue J155_02039 PF00672 HAMP domain J155_02039 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_02040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_02040 PF00672 HAMP domain J155_02040 PF02203 Tar ligand binding domain homologue J155_02041 PF00672 HAMP domain J155_02041 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_02041 PF02203 Tar ligand binding domain homologue J155_02042 PF00672 HAMP domain J155_02042 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_02043 PF00672 HAMP domain J155_02043 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_02043 PF02203 Tar ligand binding domain homologue J155_02045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_02045 PF02203 Tar ligand binding domain homologue J155_02045 PF00672 HAMP domain J155_02046 PF17200 Single Cache domain 2 J155_02046 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_02046 PF00672 HAMP domain J155_02046 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_02046 PF00672 HAMP domain J155_02046 PF17200 Single Cache domain 2 J155_02048 PF02203 Tar ligand binding domain homologue J155_02048 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_02048 PF00672 HAMP domain J155_02049 PF09078 CheY binding J155_02049 PF01584 CheW-like domain J155_02049 PF02895 Signal transducing histidine kinase, homodimeric domain J155_02049 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_02049 PF01627 Hpt domain J155_02050 PF00072 Response regulator receiver domain J155_02052 PF01584 CheW-like domain J155_02053 PF13614 AAA domain J155_02054 PF00691 OmpA family J155_02054 PF13677 Membrane MotB of proton-channel complex MotA/MotB J155_02055 PF01618 MotA/TolQ/ExbB proton channel family J155_02058 PF03793 PASTA domain J155_02058 PF00069 Protein kinase domain J155_02067 PF13276 HTH-like domain J155_02067 PF13333 Integrase core domain J155_02067 PF00665 Integrase core domain J155_02068 PF01527 Transposase J155_02074 PF04055 Radical SAM superfamily J155_02074 PF13186 Iron-sulfur cluster-binding domain J155_02077 PF01584 CheW-like domain J155_02077 PF02895 Signal transducing histidine kinase, homodimeric domain J155_02077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_02077 PF01627 Hpt domain J155_02077 PF07194 P2 response regulator binding domain J155_02078 PF04344 Chemotaxis phosphatase, CheZ J155_02079 PF00072 Response regulator receiver domain J155_02080 PF04539 Sigma-70 region 3 J155_02080 PF04545 Sigma-70, region 4 J155_02080 PF04542 Sigma-70 region 2 J155_02081 PF10609 NUBPL iron-transfer P-loop NTPase J155_02082 PF00448 SRP54-type protein, GTPase domain J155_02083 PF00771 FHIPEP family J155_02084 PF01312 FlhB HrpN YscU SpaS Family J155_02085 PF00990 Diguanylate cyclase, GGDEF domain J155_02085 PF00563 EAL domain J155_02085 PF03707 Bacterial signalling protein N terminal repeat J155_02086 PF00990 Diguanylate cyclase, GGDEF domain J155_02086 PF03707 Bacterial signalling protein N terminal repeat J155_02086 PF00563 EAL domain J155_02086 PF13188 PAS domain J155_02087 PF03707 Bacterial signalling protein N terminal repeat J155_02087 PF13188 PAS domain J155_02087 PF00563 EAL domain J155_02087 PF00990 Diguanylate cyclase, GGDEF domain J155_02088 PF01311 Bacterial export proteins, family 1 J155_02089 PF01313 Bacterial export proteins, family 3 J155_02091 PF00813 FliP family J155_02092 PF04347 Flagellar biosynthesis protein, FliO J155_02093 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J155_02094 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J155_02094 PF02154 Flagellar motor switch protein FliM J155_02098 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J155_02098 PF18269 T3SS EscN ATPase C-terminal domain J155_02100 PF14842 FliG N-terminal domain J155_02100 PF01706 FliG C-terminal domain J155_02100 PF14841 FliG middle domain J155_02101 PF01514 Secretory protein of YscJ/FliF family J155_02101 PF08345 Flagellar M-ring protein C-terminal J155_02102 PF02049 Flagellar hook-basal body complex protein FliE J155_02103 PF00534 Glycosyl transferases group 1 J155_02103 PF00535 Glycosyl transferase family 2 J155_02111 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J155_02111 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J155_02113 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J155_02114 PF00158 Sigma-54 interaction domain J155_02114 PF00072 Response regulator receiver domain J155_02114 PF02954 Bacterial regulatory protein, Fis family J155_02115 PF00072 Response regulator receiver domain J155_02115 PF01339 CheB methylesterase J155_02116 PF04963 Sigma-54 factor, core binding domain J155_02116 PF04552 Sigma-54, DNA binding domain J155_02116 PF00309 Sigma-54 factor, Activator interacting domain (AID) J155_02117 PF00072 Response regulator receiver domain J155_02117 PF00196 Bacterial regulatory proteins, luxR family J155_02120 PF02561 Flagellar protein FliS J155_02121 PF07196 Flagellin hook IN motif J155_02121 PF02465 Flagellar hook-associated protein 2 N-terminus J155_02121 PF07195 Flagellar hook-associated protein 2 C-terminus J155_02122 PF00700 Bacterial flagellin C-terminal helical region J155_02122 PF00669 Bacterial flagellin N-terminal helical region J155_02123 PF00700 Bacterial flagellin C-terminal helical region J155_02123 PF00669 Bacterial flagellin N-terminal helical region J155_02124 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J155_02124 PF07196 Flagellin hook IN motif J155_02125 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J155_02125 PF10135 Rod binding protein J155_02126 PF02119 Flagellar P-ring protein J155_02127 PF02107 Flagellar L-ring protein J155_02128 PF00460 Flagella basal body rod protein J155_02128 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J155_02129 PF00460 Flagella basal body rod protein J155_02129 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J155_02130 PF00460 Flagella basal body rod protein J155_02130 PF07559 Flagellar basal body protein FlaE J155_02130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J155_02131 PF03963 Flagellar hook capping protein - N-terminal region J155_02132 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J155_02132 PF00460 Flagella basal body rod protein J155_02134 PF01584 CheW-like domain J155_02134 PF00072 Response regulator receiver domain J155_02138 PF00512 His Kinase A (phospho-acceptor) domain J155_02138 PF13188 PAS domain J155_02138 PF00989 PAS fold J155_02138 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_02138 PF13426 PAS domain J155_02139 PF03707 Bacterial signalling protein N terminal repeat J155_02139 PF00563 EAL domain J155_02139 PF00990 Diguanylate cyclase, GGDEF domain J155_02140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_02140 PF07730 Histidine kinase J155_02141 PF03707 Bacterial signalling protein N terminal repeat J155_02141 PF00563 EAL domain J155_02141 PF00990 Diguanylate cyclase, GGDEF domain J155_02143 PF12729 Four helix bundle sensory module for signal transduction J155_02143 PF00672 HAMP domain J155_02143 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_02144 PF04356 Protein of unknown function (DUF489) J155_02146 PF00293 NUDIX domain J155_02147 PF02617 ATP-dependent Clp protease adaptor protein ClpS J155_02148 PF00004 ATPase family associated with various cellular activities (AAA) J155_02148 PF07724 AAA domain (Cdc48 subfamily) J155_02148 PF02861 Clp amino terminal domain, pathogenicity island component J155_02148 PF10431 C-terminal, D2-small domain, of ClpB protein J155_02148 PF17871 AAA lid domain J155_02149 PF01176 Translation initiation factor 1A / IF-1 J155_02150 PF03588 Leucyl/phenylalanyl-tRNA protein transferase J155_02152 PF07992 Pyridine nucleotide-disulphide oxidoreductase J155_02153 PF17854 FtsK alpha domain J155_02153 PF01580 FtsK/SpoIIIE family J155_02153 PF09397 Ftsk gamma domain J155_02153 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J155_02155 PF03548 Outer membrane lipoprotein carrier protein LolA J155_02157 PF12002 MgsA AAA+ ATPase C terminal J155_02157 PF16193 AAA C-terminal domain J155_02157 PF00004 ATPase family associated with various cellular activities (AAA) J155_02159 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J155_02161 PF00108 Thiolase, N-terminal domain J155_02161 PF02803 Thiolase, C-terminal domain J155_02162 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J155_02162 PF00378 Enoyl-CoA hydratase/isomerase J155_02162 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J155_02164 PF00334 Nucleoside diphosphate kinase J155_02165 PF04055 Radical SAM superfamily J155_02167 PF13464 Domain of unknown function (DUF4115) J155_02169 PF13360 PQQ-like domain J155_02169 PF01011 PQQ enzyme repeat J155_02170 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J155_02170 PF01926 50S ribosome-binding GTPase J155_02171 PF03454 MoeA C-terminal region (domain IV) J155_02171 PF03453 MoeA N-terminal region (domain I and II) J155_02171 PF00994 Probable molybdopterin binding domain J155_02172 PF00899 ThiF family J155_02177 PF13823 Alcohol dehydrogenase GroES-associated J155_02177 PF00107 Zinc-binding dehydrogenase J155_02177 PF08240 Alcohol dehydrogenase GroES-like domain J155_02179 PF03372 Endonuclease/Exonuclease/phosphatase family J155_02181 PF00994 Probable molybdopterin binding domain J155_02181 PF03454 MoeA C-terminal region (domain IV) J155_02181 PF03453 MoeA N-terminal region (domain I and II) J155_02182 PF12804 MobA-like NTP transferase domain J155_02184 PF00561 alpha/beta hydrolase fold J155_02185 PF01566 Natural resistance-associated macrophage protein J155_02186 PF02742 Iron dependent repressor, metal binding and dimerisation domain J155_02186 PF01325 Iron dependent repressor, N-terminal DNA binding domain J155_02187 PF14437 MafB19-like deaminase J155_02188 PF00929 Exonuclease J155_02189 PF05552 Conserved TM helix J155_02189 PF00924 Mechanosensitive ion channel J155_02190 PF00391 PEP-utilising enzyme, mobile domain J155_02190 PF02896 PEP-utilising enzyme, TIM barrel domain J155_02190 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J155_02191 PF03618 Kinase/pyrophosphorylase J155_02195 PF01066 CDP-alcohol phosphatidyltransferase J155_02197 PF00561 alpha/beta hydrolase fold J155_02200 PF01266 FAD dependent oxidoreductase J155_02200 PF00355 Rieske [2Fe-2S] domain J155_02202 PF17674 HHH domain J155_02202 PF00575 S1 RNA binding domain J155_02202 PF09371 Tex-like protein N-terminal domain J155_02202 PF16921 Tex protein YqgF-like domain J155_02203 PF00512 His Kinase A (phospho-acceptor) domain J155_02203 PF09308 LuxQ, periplasmic J155_02203 PF00072 Response regulator receiver domain J155_02203 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_02211 PF00034 Cytochrome c J155_02213 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J155_02214 PF00873 AcrB/AcrD/AcrF family J155_02215 PF00873 AcrB/AcrD/AcrF family J155_02216 PF01081 KDPG and KHG aldolase J155_02217 PF00920 Dehydratase family J155_02218 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J155_02219 PF02685 Glucokinase J155_02220 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J155_02220 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J155_02221 PF00005 ABC transporter J155_02221 PF17912 MalK OB fold domain J155_02224 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J155_02225 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J155_02226 PF00890 FAD binding domain J155_02226 PF02910 Fumarate reductase flavoprotein C-term J155_02228 PF13085 2Fe-2S iron-sulfur cluster binding domain J155_02229 PF03937 Flavinator of succinate dehydrogenase J155_02231 PF12704 MacB-like periplasmic core domain J155_02231 PF02687 FtsX-like permease family J155_02232 PF00005 ABC transporter J155_02234 PF03772 Competence protein J155_02234 PF00753 Metallo-beta-lactamase superfamily J155_02235 PF01618 MotA/TolQ/ExbB proton channel family J155_02236 PF02472 Biopolymer transport protein ExbD/TolR J155_02237 PF00005 ABC transporter J155_02237 PF00664 ABC transporter transmembrane region J155_02238 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J155_02239 PF02348 Cytidylyltransferase J155_02240 PF01451 Low molecular weight phosphotyrosine protein phosphatase J155_02242 PF08459 UvrC Helix-hairpin-helix N-terminal J155_02242 PF02151 UvrB/uvrC motif J155_02242 PF01541 GIY-YIG catalytic domain J155_02243 PF01066 CDP-alcohol phosphatidyltransferase J155_02247 PF13193 AMP-binding enzyme C-terminal domain J155_02247 PF00668 Condensation domain J155_02247 PF00550 Phosphopantetheine attachment site J155_02247 PF00501 AMP-binding enzyme J155_02248 PF00550 Phosphopantetheine attachment site J155_02248 PF00668 Condensation domain J155_02248 PF13193 AMP-binding enzyme C-terminal domain J155_02248 PF00975 Thioesterase domain J155_02248 PF00501 AMP-binding enzyme J155_02250 PF01527 Transposase J155_02252 PF01527 Transposase J155_02253 PF00589 Phage integrase family J155_02255 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J155_02255 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J155_02255 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J155_02257 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J155_02260 PF00196 Bacterial regulatory proteins, luxR family J155_02260 PF00072 Response regulator receiver domain J155_02261 PF12111 Polyribonucleotide phosphorylase C terminal J155_02261 PF10150 Ribonuclease E/G family J155_02261 PF00575 S1 RNA binding domain J155_02262 PF01479 S4 domain J155_02262 PF00849 RNA pseudouridylate synthase J155_02263 PF11737 Protein of unknown function (DUF3300) J155_02264 PF02535 ZIP Zinc transporter J155_02266 PF01329 Pterin 4 alpha carbinolamine dehydratase J155_02267 PF01106 NifU-like domain J155_02276 PF08241 Methyltransferase domain J155_02276 PF12697 Alpha/beta hydrolase family J155_02278 PF00106 short chain dehydrogenase J155_02282 PF13276 HTH-like domain J155_02282 PF00665 Integrase core domain J155_02282 PF13333 Integrase core domain J155_02283 PF01527 Transposase J155_02284 PF01494 FAD binding domain J155_02285 PF09335 SNARE associated Golgi protein J155_02287 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J155_02288 PF07995 Glucose / Sorbosone dehydrogenase J155_02290 PF00144 Beta-lactamase J155_02291 PF04397 LytTr DNA-binding domain J155_02291 PF00072 Response regulator receiver domain J155_02292 PF06580 Histidine kinase J155_02292 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_02292 PF07694 5TMR of 5TMR-LYT J155_02294 PF03797 Autotransporter beta-domain J155_02294 PF00082 Subtilase family J155_02295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J155_02296 PF00873 AcrB/AcrD/AcrF family J155_02298 PF13426 PAS domain J155_02298 PF00072 Response regulator receiver domain J155_02298 PF08448 PAS fold J155_02298 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_02298 PF00512 His Kinase A (phospho-acceptor) domain J155_02299 PF00196 Bacterial regulatory proteins, luxR family J155_02299 PF00072 Response regulator receiver domain J155_02300 PF12951 Passenger-associated-transport-repeat J155_02300 PF12951 Passenger-associated-transport-repeat J155_02301 PF08447 PAS fold J155_02301 PF00563 EAL domain J155_02301 PF08448 PAS fold J155_02301 PF00990 Diguanylate cyclase, GGDEF domain J155_02304 PF05974 Domain of unknown function (DUF892) J155_02306 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J155_02308 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J155_02308 PF14824 Sirohaem biosynthesis protein central J155_02308 PF10414 Sirohaem synthase dimerisation region J155_02311 PF05977 Transmembrane secretion effector J155_02312 PF07969 Amidohydrolase family J155_02314 PF00857 Isochorismatase family J155_02317 PF00196 Bacterial regulatory proteins, luxR family J155_02317 PF00072 Response regulator receiver domain J155_02320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_02320 PF03466 LysR substrate binding domain J155_02321 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus J155_02321 PF00361 Proton-conducting membrane transporter J155_02321 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J155_02322 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) J155_02323 PF13333 Integrase core domain J155_02323 PF13276 HTH-like domain J155_02323 PF00665 Integrase core domain J155_02324 PF01527 Transposase J155_02325 PF01381 Helix-turn-helix J155_02326 PF05284 Protein of unknown function (DUF736) J155_02327 PF04002 RadC-like JAB domain J155_02332 PF13356 Arm DNA-binding domain J155_02332 PF00589 Phage integrase family J155_02335 PF00593 TonB dependent receptor J155_02335 PF07715 TonB-dependent Receptor Plug Domain J155_02339 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin J155_02344 PF00593 TonB dependent receptor J155_02344 PF07715 TonB-dependent Receptor Plug Domain J155_02347 PF10947 Protein of unknown function (DUF2628) J155_02350 PF00722 Glycosyl hydrolases family 16 J155_02350 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) J155_02355 PF00664 ABC transporter transmembrane region J155_02355 PF00005 ABC transporter J155_02355 PF03412 Peptidase C39 family J155_02357 PF13614 AAA domain J155_02365 PF01751 Toprim domain J155_02365 PF01131 DNA topoisomerase J155_02366 PF01751 Toprim domain J155_02366 PF01131 DNA topoisomerase J155_02367 PF00145 C-5 cytosine-specific DNA methylase J155_02379 PF06250 YhcG PDDEXK nuclease domain J155_02379 PF17761 DUF1016 N-terminal domain J155_02380 PF01527 Transposase J155_02381 PF13333 Integrase core domain J155_02381 PF13276 HTH-like domain J155_02381 PF00665 Integrase core domain J155_02382 PF00892 EamA-like transporter family J155_02383 PF00892 EamA-like transporter family J155_02385 PF02525 Flavodoxin-like fold J155_02386 PF00043 Glutathione S-transferase, C-terminal domain J155_02386 PF02798 Glutathione S-transferase, N-terminal domain J155_02387 PF05544 Proline racemase J155_02388 PF03358 NADPH-dependent FMN reductase J155_02390 PF07690 Major Facilitator Superfamily J155_02391 PF12833 Helix-turn-helix domain J155_02391 PF02311 AraC-like ligand binding domain J155_02421 PF13361 UvrD-like helicase C-terminal domain J155_02421 PF12462 DNA helicase IV / RNA helicase N terminal J155_02421 PF00580 UvrD/REP helicase N-terminal domain J155_02436 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_02436 PF03466 LysR substrate binding domain J155_02437 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J155_02437 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J155_02438 PF03401 Tripartite tricarboxylate transporter family receptor J155_02442 PF04002 RadC-like JAB domain J155_02449 PF00589 Phage integrase family J155_02449 PF13356 Arm DNA-binding domain J155_02450 PF02540 NAD synthase J155_02450 PF00117 Glutamine amidotransferase class-I J155_02450 PF00958 GMP synthase C terminal domain J155_02451 PF00571 CBS domain J155_02451 PF00478 IMP dehydrogenase / GMP reductase domain J155_02452 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J155_02452 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J155_02454 PF02254 TrkA-N domain J155_02454 PF00999 Sodium/hydrogen exchanger family J155_02455 PF00483 Nucleotidyl transferase J155_02456 PF02719 Polysaccharide biosynthesis protein J155_02457 PF00953 Glycosyl transferase family 4 J155_02458 PF18073 Rubredoxin metal binding domain J155_02460 PF00216 Bacterial DNA-binding protein J155_02461 PF00575 S1 RNA binding domain J155_02462 PF02224 Cytidylate kinase J155_02463 PF00444 Ribosomal protein L36 J155_02466 PF04371 Porphyromonas-type peptidyl-arginine deiminase J155_02467 PF00795 Carbon-nitrogen hydrolase J155_02472 PF00528 Binding-protein-dependent transport system inner membrane component J155_02473 PF00528 Binding-protein-dependent transport system inner membrane component J155_02477 PF00356 Bacterial regulatory proteins, lacI family J155_02479 PF03795 YCII-related domain J155_02480 PF02616 Segregation and condensation protein ScpA J155_02481 PF04079 Segregation and condensation complex subunit ScpB J155_02482 PF01479 S4 domain J155_02482 PF00849 RNA pseudouridylate synthase J155_02485 PF00795 Carbon-nitrogen hydrolase J155_02486 PF00155 Aminotransferase class I and II J155_02487 PF00005 ABC transporter J155_02488 PF03379 CcmB protein J155_02489 PF01578 Cytochrome C assembly protein J155_02491 PF03100 CcmE J155_02492 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J155_02492 PF01578 Cytochrome C assembly protein J155_02493 PF08534 Redoxin J155_02494 PF03918 Cytochrome C biogenesis protein J155_02496 PF00561 alpha/beta hydrolase fold J155_02497 PF00313 'Cold-shock' DNA-binding domain J155_02498 PF00664 ABC transporter transmembrane region J155_02498 PF00005 ABC transporter J155_02499 PF00664 ABC transporter transmembrane region J155_02499 PF00005 ABC transporter J155_02500 PF01654 Cytochrome bd terminal oxidase subunit I J155_02501 PF02322 Cytochrome bd terminal oxidase subunit II J155_02505 PF02129 X-Pro dipeptidyl-peptidase (S15 family) J155_02505 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J155_02506 PF00171 Aldehyde dehydrogenase family J155_02507 PF01472 PUA domain J155_02507 PF00696 Amino acid kinase family J155_02509 PF00206 Lyase J155_02510 PF01118 Semialdehyde dehydrogenase, NAD binding domain J155_02512 PF00696 Amino acid kinase family J155_02512 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase J155_02515 PF00764 Arginosuccinate synthase J155_02516 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J155_02516 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J155_02518 PF01406 tRNA synthetases class I (C) catalytic domain J155_02518 PF09190 DALR domain J155_02519 PF02657 Fe-S metabolism associated domain J155_02521 PF01258 Prokaryotic dksA/traR C4-type zinc finger J155_02522 PF01809 Putative membrane protein insertion efficiency factor J155_02523 PF01979 Amidohydrolase family J155_02524 PF08460 Bacterial SH3 domain J155_02524 PF01551 Peptidase family M23 J155_02527 PF06751 Ethanolamine ammonia lyase large subunit (EutB) J155_02528 PF05985 Ethanolamine ammonia-lyase light chain (EutC) J155_02530 PF00753 Metallo-beta-lactamase superfamily J155_02534 PF01527 Transposase J155_02537 PF00295 Glycosyl hydrolases family 28 J155_02539 PF13419 Haloacid dehalogenase-like hydrolase J155_02541 PF01979 Amidohydrolase family J155_02543 PF08207 Elongation factor P (EF-P) KOW-like domain J155_02543 PF09285 Elongation factor P, C-terminal J155_02543 PF01132 Elongation factor P (EF-P) OB domain J155_02544 PF04055 Radical SAM superfamily J155_02545 PF00990 Diguanylate cyclase, GGDEF domain J155_02545 PF13188 PAS domain J155_02545 PF03707 Bacterial signalling protein N terminal repeat J155_02545 PF00563 EAL domain J155_02547 PF00588 SpoU rRNA Methylase family J155_02548 PF00459 Inositol monophosphatase family J155_02549 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J155_02549 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J155_02550 PF00545 ribonuclease J155_02553 PF03880 DbpA RNA binding domain J155_02553 PF00270 DEAD/DEAH box helicase J155_02553 PF00271 Helicase conserved C-terminal domain J155_02554 PF00156 Phosphoribosyl transferase domain J155_02555 PF02696 Uncharacterized ACR, YdiU/UPF0061 family J155_02556 PF00135 Carboxylesterase family J155_02557 PF02798 Glutathione S-transferase, N-terminal domain J155_02557 PF14497 Glutathione S-transferase, C-terminal domain J155_02558 PF00313 'Cold-shock' DNA-binding domain J155_02559 PF07152 YaeQ protein J155_02561 PF00072 Response regulator receiver domain J155_02561 PF00563 EAL domain J155_02561 PF00990 Diguanylate cyclase, GGDEF domain J155_02562 PF01435 Peptidase family M48 J155_02563 PF00749 tRNA synthetases class I (E and Q), catalytic domain J155_02564 PF00106 short chain dehydrogenase J155_02565 PF07879 PHB/PHA accumulation regulator DNA-binding domain J155_02565 PF05233 PHB accumulation regulatory domain J155_02568 PF01119 DNA mismatch repair protein, C-terminal domain J155_02568 PF08676 MutL C terminal dimerisation domain J155_02569 PF01520 N-acetylmuramoyl-L-alanine amidase J155_02569 PF11741 AMIN domain J155_02570 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J155_02571 PF01256 Carbohydrate kinase J155_02571 PF03853 YjeF-related protein N-terminus J155_02572 PF08331 Domain of unknown function (DUF1730) J155_02573 PF02601 Exonuclease VII, large subunit J155_02573 PF13742 OB-fold nucleic acid binding domain J155_02575 PF03781 Sulfatase-modifying factor enzyme 1 J155_02576 PF01612 3'-5' exonuclease J155_02576 PF00570 HRDC domain J155_02578 PF13298 DNA polymerase Ligase (LigD) J155_02578 PF01068 ATP dependent DNA ligase domain J155_02578 PF04679 ATP dependent DNA ligase C terminal region J155_02582 PF00589 Phage integrase family J155_02586 PF05598 Transposase domain (DUF772) J155_02588 PF01527 Transposase J155_02592 PF00171 Aldehyde dehydrogenase family J155_02592 PF01619 Proline dehydrogenase J155_02592 PF14850 DNA-binding domain of Proline dehydrogenase J155_02592 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J155_02594 PF01527 Transposase J155_02596 PF13333 Integrase core domain J155_02596 PF00665 Integrase core domain J155_02596 PF13276 HTH-like domain J155_02598 PF00239 Resolvase, N terminal domain J155_02598 PF02796 Helix-turn-helix domain of resolvase J155_02601 PF02384 N-6 DNA Methylase J155_02602 PF09572 XamI restriction endonuclease J155_02614 PF01584 CheW-like domain J155_02615 PF12729 Four helix bundle sensory module for signal transduction J155_02615 PF00672 HAMP domain J155_02615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_02616 PF02245 Methylpurine-DNA glycosylase (MPG) J155_02617 PF00271 Helicase conserved C-terminal domain J155_02617 PF08494 DEAD/H associated J155_02617 PF00270 DEAD/DEAH box helicase J155_02620 PF04386 Stringent starvation protein B J155_02621 PF02798 Glutathione S-transferase, N-terminal domain J155_02621 PF00043 Glutathione S-transferase, C-terminal domain J155_02622 PF02167 Cytochrome C1 family J155_02623 PF00032 Cytochrome b(C-terminal)/b6/petD J155_02623 PF00033 Cytochrome b/b6/petB J155_02624 PF00355 Rieske [2Fe-2S] domain J155_02624 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal J155_02625 PF01464 Transglycosylase SLT domain J155_02628 PF04055 Radical SAM superfamily J155_02628 PF00919 Uncharacterized protein family UPF0004 J155_02628 PF01938 TRAM domain J155_02629 PF02562 PhoH-like protein J155_02631 PF02130 Uncharacterized protein family UPF0054 J155_02633 PF00571 CBS domain J155_02633 PF03471 Transporter associated domain J155_02636 PF00171 Aldehyde dehydrogenase family J155_02637 PF00528 Binding-protein-dependent transport system inner membrane component J155_02638 PF00528 Binding-protein-dependent transport system inner membrane component J155_02639 PF00005 ABC transporter J155_02639 PF08402 TOBE domain J155_02640 PF02321 Outer membrane efflux protein J155_02641 PF07690 Major Facilitator Superfamily J155_02642 PF13533 Biotin-lipoyl like J155_02643 PF13416 Bacterial extracellular solute-binding protein J155_02644 PF00202 Aminotransferase class-III J155_02645 PF00120 Glutamine synthetase, catalytic domain J155_02646 PF07722 Peptidase C26 J155_02647 PF00120 Glutamine synthetase, catalytic domain J155_02648 PF01266 FAD dependent oxidoreductase J155_02649 PF00990 Diguanylate cyclase, GGDEF domain J155_02649 PF00072 Response regulator receiver domain J155_02650 PF01814 Hemerythrin HHE cation binding domain J155_02651 PF00083 Sugar (and other) transporter J155_02651 PF07690 Major Facilitator Superfamily J155_02653 PF00384 Molybdopterin oxidoreductase J155_02654 PF02634 FdhD/NarQ family J155_02655 PF07690 Major Facilitator Superfamily J155_02656 PF00202 Aminotransferase class-III J155_02658 PF04286 Protein of unknown function (DUF445) J155_02659 PF00672 HAMP domain J155_02659 PF00512 His Kinase A (phospho-acceptor) domain J155_02659 PF01627 Hpt domain J155_02659 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_02659 PF00072 Response regulator receiver domain J155_02659 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J155_02660 PF00072 Response regulator receiver domain J155_02661 PF07690 Major Facilitator Superfamily J155_02662 PF05088 Bacterial NAD-glutamate dehydrogenase J155_02664 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J155_02664 PF00529 HlyD membrane-fusion protein of T1SS J155_02665 PF00873 AcrB/AcrD/AcrF family J155_02666 PF00356 Bacterial regulatory proteins, lacI family J155_02667 PF00381 PTS HPr component phosphorylation site J155_02667 PF00391 PEP-utilising enzyme, mobile domain J155_02667 PF05524 PEP-utilising enzyme, N-terminal J155_02667 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J155_02667 PF02896 PEP-utilising enzyme, TIM barrel domain J155_02668 PF00294 pfkB family carbohydrate kinase J155_02669 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J155_02677 PF07549 SecD/SecF GG Motif J155_02677 PF02355 Protein export membrane protein J155_02678 PF07549 SecD/SecF GG Motif J155_02678 PF13721 SecD export protein N-terminal TM region J155_02678 PF02355 Protein export membrane protein J155_02679 PF02699 Preprotein translocase subunit J155_02680 PF01702 Queuine tRNA-ribosyltransferase J155_02681 PF02547 Queuosine biosynthesis protein J155_02690 PF02927 Cellulase N-terminal ig-like domain J155_02690 PF00759 Glycosyl hydrolase family 9 J155_02692 PF00037 4Fe-4S binding domain J155_02695 PF01467 Cytidylyltransferase-like J155_02697 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_02697 PF00183 Hsp90 protein J155_02701 PF07715 TonB-dependent Receptor Plug Domain J155_02701 PF00593 TonB dependent receptor J155_02703 PF04616 Glycosyl hydrolases family 43 J155_02704 PF07532 Bacterial Ig-like domain (group 4) J155_02705 PF00593 TonB dependent receptor J155_02705 PF07715 TonB-dependent Receptor Plug Domain J155_02707 PF00082 Subtilase family J155_02707 PF09286 Pro-kumamolisin, activation domain J155_02713 PF13520 Amino acid permease J155_02716 PF00557 Metallopeptidase family M24 J155_02716 PF01321 Creatinase/Prolidase N-terminal domain J155_02717 PF00171 Aldehyde dehydrogenase family J155_02718 PF00701 Dihydrodipicolinate synthetase family J155_02719 PF07992 Pyridine nucleotide-disulphide oxidoreductase J155_02719 PF04324 BFD-like [2Fe-2S] binding domain J155_02721 PF01266 FAD dependent oxidoreductase J155_02722 PF05544 Proline racemase J155_02724 PF00448 SRP54-type protein, GTPase domain J155_02724 PF02881 SRP54-type protein, helical bundle domain J155_02725 PF00730 HhH-GPD superfamily base excision DNA repair protein J155_02725 PF10576 Iron-sulfur binding domain of endonuclease III J155_02725 PF00633 Helix-hairpin-helix motif J155_02725 PF14815 NUDIX domain J155_02726 PF04362 Bacterial Fe(2+) trafficking J155_02727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_02727 PF00072 Response regulator receiver domain J155_02727 PF13426 PAS domain J155_02733 PF08212 Lipocalin-like domain J155_02735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J155_02735 PF12806 Acetyl-CoA dehydrogenase C-terminal like J155_02735 PF02770 Acyl-CoA dehydrogenase, middle domain J155_02735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J155_02737 PF02780 Transketolase, C-terminal domain J155_02737 PF02779 Transketolase, pyrimidine binding domain J155_02737 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J155_02741 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family J155_02742 PF16123 Hydroxyacylglutathione hydrolase C-terminus J155_02742 PF00753 Metallo-beta-lactamase superfamily J155_02743 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J155_02743 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J155_02746 PF03808 Glycosyl transferase WecB/TagA/CpsF family J155_02749 PF14667 Polysaccharide biosynthesis C-terminal domain J155_02751 PF13439 Glycosyltransferase Family 4 J155_02751 PF00534 Glycosyl transferases group 1 J155_02755 PF02397 Bacterial sugar transferase J155_02759 PF13411 MerR HTH family regulatory protein J155_02760 PF00216 Bacterial DNA-binding protein J155_02761 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J155_02761 PF01588 Putative tRNA binding domain J155_02761 PF03147 Ferredoxin-fold anticodon binding domain J155_02761 PF03484 tRNA synthetase B5 domain J155_02761 PF03483 B3/4 domain J155_02762 PF01409 tRNA synthetases class II core domain (F) J155_02762 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J155_02763 PF00453 Ribosomal protein L20 J155_02764 PF01632 Ribosomal protein L35 J155_02766 PF05198 Translation initiation factor IF-3, N-terminal domain J155_02766 PF00707 Translation initiation factor IF-3, C-terminal domain J155_02767 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J155_02767 PF02824 TGS domain J155_02767 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J155_02767 PF03129 Anticodon binding domain J155_02768 PF00356 Bacterial regulatory proteins, lacI family J155_02769 PF00128 Alpha amylase, catalytic domain J155_02769 PF00686 Starch binding domain J155_02770 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J155_02772 PF14508 Glycosyl-hydrolase 97 N-terminal J155_02772 PF10566 Glycoside hydrolase 97 J155_02772 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation J155_02776 PF00128 Alpha amylase, catalytic domain J155_02778 PF01527 Transposase J155_02787 PF03135 CagE, TrbE, VirB family, component of type IV transporter system J155_02790 PF01464 Transglycosylase SLT domain J155_02791 PF00437 Type II/IV secretion system protein J155_02792 PF03743 Bacterial conjugation TrbI-like protein J155_02796 PF02534 Type IV secretory system Conjugative DNA transfer J155_02799 PF00271 Helicase conserved C-terminal domain J155_02799 PF04851 Type III restriction enzyme, res subunit J155_02799 PF02151 UvrB/uvrC motif J155_02799 PF12344 Ultra-violet resistance protein B J155_02799 PF17757 UvrB interaction domain J155_02807 PF01527 Transposase J155_02808 PF00665 Integrase core domain J155_02808 PF13333 Integrase core domain J155_02808 PF13276 HTH-like domain J155_02814 PF01555 DNA methylase J155_02824 PF00182 Chitinase class I J155_02834 PF13276 HTH-like domain J155_02834 PF00665 Integrase core domain J155_02834 PF13333 Integrase core domain J155_02835 PF01527 Transposase J155_02836 PF00114 Pilin (bacterial filament) J155_02836 PF07963 Prokaryotic N-terminal methylation motif J155_02837 PF05567 Neisseria PilC beta-propeller domain J155_02840 PF07694 5TMR of 5TMR-LYT J155_02840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_02840 PF06580 Histidine kinase J155_02841 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases J155_02841 PF03641 Possible lysine decarboxylase J155_02841 PF11892 Domain of unknown function (DUF3412) J155_02842 PF00593 TonB dependent receptor J155_02843 PF01914 MarC family integral membrane protein J155_02845 PF00462 Glutaredoxin J155_02846 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J155_02846 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J155_02847 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J155_02847 PF02222 ATP-grasp domain J155_02848 PF00731 AIR carboxylase J155_02850 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain J155_02850 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain J155_02852 PF03725 3' exoribonuclease family, domain 2 J155_02852 PF01138 3' exoribonuclease family, domain 1 J155_02852 PF00013 KH domain J155_02852 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J155_02852 PF00575 S1 RNA binding domain J155_02853 PF00312 Ribosomal protein S15 J155_02854 PF01509 TruB family pseudouridylate synthase (N terminal domain) J155_02854 PF16198 tRNA pseudouridylate synthase B C-terminal domain J155_02854 PF09157 Pseudouridine synthase II TruB, C-terminal J155_02855 PF02033 Ribosome-binding factor A J155_02856 PF11987 Translation-initiation factor 2 J155_02856 PF04760 Translation initiation factor IF-2, N-terminal region J155_02856 PF00009 Elongation factor Tu GTP binding domain J155_02856 PF08364 Bacterial translation initiation factor IF-2 associated region J155_02857 PF00575 S1 RNA binding domain J155_02857 PF08529 NusA N-terminal domain J155_02857 PF13184 NusA-like KH domain J155_02858 PF02576 RimP N-terminal domain J155_02858 PF17384 RimP C-terminal SH3 domain J155_02860 PF00361 Proton-conducting membrane transporter J155_02861 PF00361 Proton-conducting membrane transporter J155_02861 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus J155_02862 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J155_02862 PF00361 Proton-conducting membrane transporter J155_02863 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J155_02864 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 J155_02865 PF12838 4Fe-4S dicluster domain J155_02866 PF00146 NADH dehydrogenase J155_02867 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J155_02867 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal J155_02867 PF00384 Molybdopterin oxidoreductase J155_02868 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J155_02868 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J155_02868 PF10531 SLBB domain J155_02870 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit J155_02871 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit J155_02872 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit J155_02873 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 J155_02876 PF00121 Triosephosphate isomerase J155_02877 PF00106 short chain dehydrogenase J155_02880 PF00563 EAL domain J155_02880 PF03707 Bacterial signalling protein N terminal repeat J155_02880 PF00990 Diguanylate cyclase, GGDEF domain J155_02883 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J155_02883 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J155_02883 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J155_02883 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J155_02884 PF01039 Carboxyl transferase domain J155_02884 PF17848 Acetyl-coA carboxylase zinc finger domain J155_02885 PF00290 Tryptophan synthase alpha chain J155_02887 PF00291 Pyridoxal-phosphate dependent enzyme J155_02888 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_02888 PF03466 LysR substrate binding domain J155_02889 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase J155_02890 PF01416 tRNA pseudouridine synthase J155_02894 PF02774 Semialdehyde dehydrogenase, dimerisation domain J155_02894 PF01118 Semialdehyde dehydrogenase, NAD binding domain J155_02895 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J155_02895 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J155_02896 PF01264 Chorismate synthase J155_02897 PF05175 Methyltransferase small domain J155_02898 PF02630 SCO1/SenC J155_02899 PF02666 Phosphatidylserine decarboxylase J155_02901 PF05872 Bacterial protein of unknown function (DUF853) J155_02902 PF00293 NUDIX domain J155_02905 PF03449 Transcription elongation factor, N-terminal J155_02905 PF01272 Transcription elongation factor, GreA/GreB, C-term J155_02906 PF00919 Uncharacterized protein family UPF0004 J155_02906 PF18693 TRAM domain J155_02906 PF04055 Radical SAM superfamily J155_02907 PF01738 Dienelactone hydrolase family J155_02911 PF00692 dUTPase J155_02912 PF10609 NUBPL iron-transfer P-loop NTPase J155_02913 PF00593 TonB dependent receptor J155_02913 PF07715 TonB-dependent Receptor Plug Domain J155_02916 PF01431 Peptidase family M13 J155_02916 PF05649 Peptidase family M13 J155_02917 PF01431 Peptidase family M13 J155_02917 PF05649 Peptidase family M13 J155_02920 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J155_02921 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J155_02921 PF07992 Pyridine nucleotide-disulphide oxidoreductase J155_02922 PF01266 FAD dependent oxidoreductase J155_02923 PF04235 Protein of unknown function (DUF418) J155_02924 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J155_02925 PF00877 NlpC/P60 family J155_02926 PF00877 NlpC/P60 family J155_02929 PF00375 Sodium:dicarboxylate symporter family J155_02930 PF00245 Alkaline phosphatase J155_02931 PF01171 PP-loop family J155_02931 PF09179 TilS substrate binding domain J155_02931 PF11734 TilS substrate C-terminal domain J155_02932 PF02609 Exonuclease VII small subunit J155_02933 PF00348 Polyprenyl synthetase J155_02934 PF14521 Lysine-specific metallo-endopeptidase J155_02936 PF01523 Putative modulator of DNA gyrase J155_02937 PF04751 Protein of unknown function (DUF615) J155_02938 PF01523 Putative modulator of DNA gyrase J155_02940 PF13116 Protein of unknown function J155_02940 PF13502 AsmA-like C-terminal region J155_02941 PF00575 S1 RNA binding domain J155_02941 PF10150 Ribonuclease E/G family J155_02942 PF02545 Maf-like protein J155_02943 PF04402 Protein of unknown function (DUF541) J155_02946 PF02590 Predicted SPOUT methyltransferase J155_02949 PF01467 Cytidylyltransferase-like J155_02952 PF13603 Leucyl-tRNA synthetase, Domain 2 J155_02952 PF08264 Anticodon-binding domain of tRNA J155_02952 PF00133 tRNA synthetases class I (I, L, M and V) J155_02954 PF00085 Thioredoxin J155_02959 PF04070 Domain of unknown function (DUF378) J155_02960 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J155_02962 PF03466 LysR substrate binding domain J155_02962 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_02967 PF00005 ABC transporter J155_02967 PF00664 ABC transporter transmembrane region J155_02970 PF00873 AcrB/AcrD/AcrF family J155_02973 PF02321 Outer membrane efflux protein J155_02974 PF00486 Transcriptional regulatory protein, C terminal J155_02974 PF00072 Response regulator receiver domain J155_02975 PF00672 HAMP domain J155_02975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_02975 PF00512 His Kinase A (phospho-acceptor) domain J155_02976 PF00999 Sodium/hydrogen exchanger family J155_02977 PF00144 Beta-lactamase J155_02978 PF03737 Aldolase/RraA J155_02981 PF00990 Diguanylate cyclase, GGDEF domain J155_02981 PF00072 Response regulator receiver domain J155_02982 PF01479 S4 domain J155_02982 PF00849 RNA pseudouridylate synthase J155_02983 PF00563 EAL domain J155_02983 PF00990 Diguanylate cyclase, GGDEF domain J155_02983 PF08448 PAS fold J155_02984 PF00271 Helicase conserved C-terminal domain J155_02984 PF00270 DEAD/DEAH box helicase J155_02984 PF03880 DbpA RNA binding domain J155_02994 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J155_02994 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J155_02996 PF00654 Voltage gated chloride channel J155_02997 PF08240 Alcohol dehydrogenase GroES-like domain J155_02997 PF00107 Zinc-binding dehydrogenase J155_03000 PF07715 TonB-dependent Receptor Plug Domain J155_03000 PF00593 TonB dependent receptor J155_03002 PF01483 Proprotein convertase P-domain J155_03002 PF00082 Subtilase family J155_03005 PF01483 Proprotein convertase P-domain J155_03005 PF00082 Subtilase family J155_03007 PF00248 Aldo/keto reductase family J155_03008 PF07690 Major Facilitator Superfamily J155_03009 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_03009 PF03466 LysR substrate binding domain J155_03011 PF12833 Helix-turn-helix domain J155_03011 PF06719 AraC-type transcriptional regulator N-terminus J155_03013 PF00440 Bacterial regulatory proteins, tetR family J155_03013 PF16859 Tetracyclin repressor-like, C-terminal domain J155_03014 PF02321 Outer membrane efflux protein J155_03015 PF00873 AcrB/AcrD/AcrF family J155_03016 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J155_03016 PF00529 HlyD membrane-fusion protein of T1SS J155_03018 PF01475 Ferric uptake regulator family J155_03019 PF00749 tRNA synthetases class I (E and Q), catalytic domain J155_03024 PF06123 Inner membrane protein CreD J155_03026 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_03026 PF00512 His Kinase A (phospho-acceptor) domain J155_03026 PF00672 HAMP domain J155_03027 PF00072 Response regulator receiver domain J155_03027 PF00486 Transcriptional regulatory protein, C terminal J155_03028 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ J155_03030 PF17757 UvrB interaction domain J155_03030 PF03461 TRCF domain J155_03030 PF00271 Helicase conserved C-terminal domain J155_03030 PF00270 DEAD/DEAH box helicase J155_03030 PF02559 CarD-like/TRCF domain J155_03037 PF01627 Hpt domain J155_03037 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_03037 PF02895 Signal transducing histidine kinase, homodimeric domain J155_03037 PF09078 CheY binding J155_03037 PF01584 CheW-like domain J155_03038 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_03038 PF00672 HAMP domain J155_03038 PF02203 Tar ligand binding domain homologue J155_03039 PF01584 CheW-like domain J155_03040 PF00563 EAL domain J155_03040 PF00990 Diguanylate cyclase, GGDEF domain J155_03040 PF13426 PAS domain J155_03041 PF01739 CheR methyltransferase, SAM binding domain J155_03041 PF03705 CheR methyltransferase, all-alpha domain J155_03042 PF00072 Response regulator receiver domain J155_03042 PF01339 CheB methylesterase J155_03043 PF13091 PLD-like domain J155_03044 PF05649 Peptidase family M13 J155_03044 PF01431 Peptidase family M13 J155_03046 PF00300 Histidine phosphatase superfamily (branch 1) J155_03047 PF04493 Endonuclease V J155_03049 PF05726 Pirin C-terminal cupin domain J155_03049 PF02678 Pirin J155_03052 PF02678 Pirin J155_03052 PF05726 Pirin C-terminal cupin domain J155_03053 PF02554 Carbon starvation protein CstA J155_03053 PF13722 5TM C-terminal transporter carbon starvation CstA J155_03054 PF04328 Selenoprotein, putative J155_03063 PF01527 Transposase J155_03065 PF02625 XdhC and CoxI family J155_03065 PF13478 XdhC Rossmann domain J155_03066 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J155_03066 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J155_03067 PF00941 FAD binding domain in molybdopterin dehydrogenase J155_03067 PF03450 CO dehydrogenase flavoprotein C-terminal domain J155_03068 PF01799 [2Fe-2S] binding domain J155_03068 PF10518 TAT (twin-arginine translocation) pathway signal sequence J155_03068 PF00111 2Fe-2S iron-sulfur cluster binding domain J155_03069 PF00550 Phosphopantetheine attachment site J155_03069 PF02801 Beta-ketoacyl synthase, C-terminal domain J155_03069 PF08659 KR domain J155_03069 PF00698 Acyl transferase domain J155_03069 PF08240 Alcohol dehydrogenase GroES-like domain J155_03069 PF08990 Erythronolide synthase docking J155_03069 PF09277 Erythronolide synthase, docking J155_03069 PF14765 Polyketide synthase dehydratase J155_03069 PF16197 Ketoacyl-synthetase C-terminal extension J155_03069 PF00109 Beta-ketoacyl synthase, N-terminal domain J155_03070 PF00360 Phytochrome region J155_03070 PF00563 EAL domain J155_03070 PF01590 GAF domain J155_03070 PF00990 Diguanylate cyclase, GGDEF domain J155_03071 PF00436 Single-strand binding protein family J155_03072 PF00348 Polyprenyl synthetase J155_03074 PF08245 Mur ligase middle domain J155_03074 PF02875 Mur ligase family, glutamate ligase domain J155_03077 PF01842 ACT domain J155_03077 PF00696 Amino acid kinase family J155_03078 PF02567 Phenazine biosynthesis-like protein J155_03079 PF02567 Phenazine biosynthesis-like protein J155_03081 PF02566 OsmC-like protein J155_03082 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J155_03082 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J155_03083 PF03652 Holliday junction resolvase J155_03084 PF02622 Uncharacterized ACR, COG1678 J155_03085 PF03352 Methyladenine glycosylase J155_03085 PF00958 GMP synthase C terminal domain J155_03085 PF00117 Glutamine amidotransferase class-I J155_03085 PF13302 Acetyltransferase (GNAT) domain J155_03085 PF13673 Acetyltransferase (GNAT) domain J155_03088 PF03211 Pectate lyase J155_03089 PF00437 Type II/IV secretion system protein J155_03090 PF00437 Type II/IV secretion system protein J155_03091 PF01168 Alanine racemase, N-terminal domain J155_03092 PF14748 Pyrroline-5-carboxylate reductase dimerisation J155_03092 PF03807 NADP oxidoreductase coenzyme F420-dependent J155_03094 PF01551 Peptidase family M23 J155_03098 PF01965 DJ-1/PfpI family J155_03100 PF02082 Transcriptional regulator J155_03101 PF01458 Uncharacterized protein family (UPF0051) J155_03102 PF00005 ABC transporter J155_03103 PF01458 Uncharacterized protein family (UPF0051) J155_03104 PF00266 Aminotransferase class-V J155_03106 PF00355 Rieske [2Fe-2S] domain J155_03107 PF00593 TonB dependent receptor J155_03107 PF07715 TonB-dependent Receptor Plug Domain J155_03108 PF13640 2OG-Fe(II) oxygenase superfamily J155_03108 PF18331 PKHD-type hydroxylase C-terminal domain J155_03113 PF02424 ApbE family J155_03114 PF00258 Flavodoxin J155_03114 PF00667 FAD binding domain J155_03114 PF00175 Oxidoreductase NAD-binding domain J155_03118 PF01546 Peptidase family M20/M25/M40 J155_03118 PF07687 Peptidase dimerisation domain J155_03120 PF01636 Phosphotransferase enzyme family J155_03121 PF00483 Nucleotidyl transferase J155_03122 PF00308 Bacterial dnaA protein J155_03123 PF01594 AI-2E family transporter J155_03125 PF02769 AIR synthase related protein, C-terminal domain J155_03125 PF00586 AIR synthase related protein, N-terminal domain J155_03127 PF00551 Formyl transferase J155_03131 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J155_03132 PF01722 BolA-like protein J155_03133 PF00571 CBS domain J155_03133 PF01380 SIS domain J155_03136 PF03968 OstA-like protein J155_03137 PF00005 ABC transporter J155_03138 PF04552 Sigma-54, DNA binding domain J155_03138 PF04963 Sigma-54 factor, core binding domain J155_03138 PF00309 Sigma-54 factor, Activator interacting domain (AID) J155_03139 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J155_03140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J155_03141 PF07475 HPr Serine kinase C-terminal domain J155_03141 PF02603 HPr Serine kinase N terminus J155_03142 PF03668 P-loop ATPase protein family J155_03144 PF00381 PTS HPr component phosphorylation site J155_03145 PF05524 PEP-utilising enzyme, N-terminal J155_03145 PF00391 PEP-utilising enzyme, mobile domain J155_03145 PF02896 PEP-utilising enzyme, TIM barrel domain J155_03146 PF00571 CBS domain J155_03146 PF01769 Divalent cation transporter J155_03146 PF03448 MgtE intracellular N domain J155_03147 PF00756 Putative esterase J155_03148 PF02322 Cytochrome bd terminal oxidase subunit II J155_03149 PF01654 Cytochrome bd terminal oxidase subunit I J155_03151 PF00324 Amino acid permease J155_03152 PF00544 Pectate lyase J155_03153 PF00561 alpha/beta hydrolase fold J155_03154 PF00196 Bacterial regulatory proteins, luxR family J155_03155 PF00324 Amino acid permease J155_03160 PF12706 Beta-lactamase superfamily domain J155_03161 PF04820 Tryptophan halogenase J155_03166 PF09278 MerR, DNA binding J155_03166 PF00376 MerR family regulatory protein J155_03167 PF07690 Major Facilitator Superfamily J155_03169 PF03738 Glutathionylspermidine synthase preATP-grasp J155_03174 PF04012 PspA/IM30 family J155_03176 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J155_03176 PF01243 Pyridoxamine 5'-phosphate oxidase J155_03177 PF01202 Shikimate kinase J155_03178 PF01761 3-dehydroquinate synthase J155_03180 PF01208 Uroporphyrinogen decarboxylase (URO-D) J155_03193 PF02954 Bacterial regulatory protein, Fis family J155_03193 PF01590 GAF domain J155_03193 PF00158 Sigma-54 interaction domain J155_03194 PF07690 Major Facilitator Superfamily J155_03195 PF00072 Response regulator receiver domain J155_03195 PF01627 Hpt domain J155_03195 PF00512 His Kinase A (phospho-acceptor) domain J155_03195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_03195 PF17149 Periplasmic sensor domain found in signal transduction proteins J155_03195 PF00672 HAMP domain J155_03196 PF00512 His Kinase A (phospho-acceptor) domain J155_03196 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_03196 PF00672 HAMP domain J155_03196 PF17149 Periplasmic sensor domain found in signal transduction proteins J155_03196 PF00072 Response regulator receiver domain J155_03196 PF01627 Hpt domain J155_03198 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_03198 PF00512 His Kinase A (phospho-acceptor) domain J155_03198 PF00072 Response regulator receiver domain J155_03198 PF01627 Hpt domain J155_03199 PF04264 YceI-like domain J155_03203 PF03313 Serine dehydratase alpha chain J155_03203 PF03315 Serine dehydratase beta chain J155_03204 PF12697 Alpha/beta hydrolase family J155_03205 PF00696 Amino acid kinase family J155_03205 PF00742 Homoserine dehydrogenase J155_03205 PF03447 Homoserine dehydrogenase, NAD binding domain J155_03206 PF01053 Cys/Met metabolism PLP-dependent enzyme J155_03207 PF00561 alpha/beta hydrolase fold J155_03209 PF01476 LysM domain J155_03209 PF08525 Opacity-associated protein A N-terminal motif J155_03209 PF01551 Peptidase family M23 J155_03210 PF16658 Class II release factor RF3, C-terminal domain J155_03210 PF00009 Elongation factor Tu GTP binding domain J155_03211 PF03006 Haemolysin-III related J155_03212 PF05170 AsmA family J155_03213 PF00571 CBS domain J155_03213 PF00478 IMP dehydrogenase / GMP reductase domain J155_03214 PF00535 Glycosyl transferase family 2 J155_03215 PF00912 Transglycosylase J155_03216 PF01430 Hsp33 protein J155_03218 PF00593 TonB dependent receptor J155_03218 PF07715 TonB-dependent Receptor Plug Domain J155_03220 PF00440 Bacterial regulatory proteins, tetR family J155_03221 PF00561 alpha/beta hydrolase fold J155_03222 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J155_03222 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J155_03222 PF09317 Domain of unknown function (DUF1974) J155_03227 PF01597 Glycine cleavage H-protein J155_03228 PF08669 Glycine cleavage T-protein C-terminal barrel domain J155_03228 PF01571 Aminomethyltransferase folate-binding domain J155_03230 PF16200 C-terminal region of band_7 J155_03230 PF01145 SPFH domain / Band 7 family J155_03231 PF02694 Uncharacterised BCR, YnfA/UPF0060 family J155_03232 PF03819 MazG nucleotide pyrophosphohydrolase domain J155_03233 PF00459 Inositol monophosphatase family J155_03234 PF00293 NUDIX domain J155_03235 PF00202 Aminotransferase class-III J155_03236 PF04452 RNA methyltransferase J155_03237 PF02685 Glucokinase J155_03240 PF01476 LysM domain J155_03240 PF00704 Glycosyl hydrolases family 18 J155_03241 PF07691 PA14 domain J155_03241 PF02838 Glycosyl hydrolase family 20, domain 2 J155_03241 PF00728 Glycosyl hydrolase family 20, catalytic domain J155_03243 PF14310 Fibronectin type III-like domain J155_03243 PF01915 Glycosyl hydrolase family 3 C-terminal domain J155_03243 PF00933 Glycosyl hydrolase family 3 N terminal domain J155_03243 PF07691 PA14 domain J155_03245 PF01301 Glycosyl hydrolases family 35 J155_03246 PF13520 Amino acid permease J155_03248 PF11975 Family 4 glycosyl hydrolase C-terminal domain J155_03248 PF02056 Family 4 glycosyl hydrolase J155_03250 PF17678 Glycosyl hydrolase family 92 N-terminal domain J155_03250 PF07971 Glycosyl hydrolase family 92 J155_03251 PF01301 Glycosyl hydrolases family 35 J155_03257 PF03932 CutC family J155_03258 PF01112 Asparaginase J155_03259 PF13302 Acetyltransferase (GNAT) domain J155_03262 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_03262 PF01584 CheW-like domain J155_03262 PF01627 Hpt domain J155_03262 PF00072 Response regulator receiver domain J155_03263 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J155_03263 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_03265 PF00072 Response regulator receiver domain J155_03266 PF00072 Response regulator receiver domain J155_03267 PF02951 Prokaryotic glutathione synthetase, N-terminal domain J155_03267 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain J155_03269 PF03747 ADP-ribosylglycohydrolase J155_03270 PF00814 Glycoprotease family J155_03271 PF04851 Type III restriction enzyme, res subunit J155_03271 PF13307 Helicase C-terminal domain J155_03273 PF00912 Transglycosylase J155_03273 PF00905 Penicillin binding protein transpeptidase domain J155_03273 PF14814 Bifunctional transglycosylase second domain J155_03274 PF00535 Glycosyl transferase family 2 J155_03276 PF02824 TGS domain J155_03276 PF13291 ACT domain J155_03276 PF04607 Region found in RelA / SpoT proteins J155_03277 PF12706 Beta-lactamase superfamily domain J155_03278 PF03070 TENA/THI-4/PQQC family J155_03279 PF05402 Coenzyme PQQ synthesis protein D (PqqD) J155_03280 PF13186 Iron-sulfur cluster-binding domain J155_03280 PF04055 Radical SAM superfamily J155_03283 PF02685 Glucokinase J155_03285 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J155_03285 PF00271 Helicase conserved C-terminal domain J155_03285 PF04408 Helicase associated domain (HA2) J155_03285 PF11898 Domain of unknown function (DUF3418) J155_03285 PF00270 DEAD/DEAH box helicase J155_03286 PF00210 Ferritin-like domain J155_03287 PF16124 RecQ zinc-binding J155_03287 PF00570 HRDC domain J155_03287 PF00270 DEAD/DEAH box helicase J155_03287 PF00271 Helicase conserved C-terminal domain J155_03287 PF09382 RQC domain J155_03294 PF00672 HAMP domain J155_03294 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_03294 PF02203 Tar ligand binding domain homologue J155_03298 PF13426 PAS domain J155_03298 PF13581 Histidine kinase-like ATPase domain J155_03298 PF07536 HWE histidine kinase J155_03299 PF06508 Queuosine biosynthesis protein QueC J155_03301 PF04055 Radical SAM superfamily J155_03303 PF00691 OmpA family J155_03304 PF04052 TolB amino-terminal domain J155_03304 PF07676 WD40-like Beta Propeller Repeat J155_03306 PF02472 Biopolymer transport protein ExbD/TolR J155_03307 PF01618 MotA/TolQ/ExbB proton channel family J155_03308 PF03061 Thioesterase superfamily J155_03309 PF05491 RuvB C-terminal winged helix domain J155_03309 PF05496 Holliday junction DNA helicase RuvB P-loop domain J155_03309 PF17864 RuvB AAA lid domain J155_03311 PF02705 K+ potassium transporter J155_03312 PF07499 RuvA, C-terminal domain J155_03312 PF01330 RuvA N terminal domain J155_03313 PF02075 Crossover junction endodeoxyribonuclease RuvC J155_03314 PF01709 Transcriptional regulator J155_03317 PF01336 OB-fold nucleic acid binding domain J155_03317 PF02938 GAD domain J155_03317 PF00152 tRNA synthetases class II (D, K and N) J155_03320 PF07690 Major Facilitator Superfamily J155_03323 PF04185 Phosphoesterase family J155_03323 PF05506 Domain of unknown function (DUF756) J155_03326 PF03466 LysR substrate binding domain J155_03326 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_03328 PF12848 ABC transporter J155_03328 PF00005 ABC transporter J155_03329 PF00593 TonB dependent receptor J155_03329 PF07715 TonB-dependent Receptor Plug Domain J155_03331 PF00593 TonB dependent receptor J155_03331 PF07715 TonB-dependent Receptor Plug Domain J155_03332 PF07715 TonB-dependent Receptor Plug Domain J155_03332 PF00593 TonB dependent receptor J155_03333 PF00067 Cytochrome P450 J155_03334 PF02254 TrkA-N domain J155_03334 PF00999 Sodium/hydrogen exchanger family J155_03339 PF00593 TonB dependent receptor J155_03339 PF07715 TonB-dependent Receptor Plug Domain J155_03339 PF07660 Secretin and TonB N terminus short domain J155_03341 PF06276 Ferric iron reductase FhuF-like transporter J155_03341 PF04183 IucA / IucC family J155_03342 PF07690 Major Facilitator Superfamily J155_03344 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J155_03344 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J155_03347 PF02654 Cobalamin-5-phosphate synthase J155_03349 PF02277 Phosphoribosyltransferase J155_03350 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase J155_03351 PF07685 CobB/CobQ-like glutamine amidotransferase domain J155_03351 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J155_03352 PF00155 Aminotransferase class I and II J155_03354 PF03186 CobD/Cbib protein J155_03354 PF17113 Regulatory signalling modulator protein AmpE J155_03355 PF12557 Cob(I)alamin adenosyltransferase N terminal J155_03355 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP J155_03358 PF07715 TonB-dependent Receptor Plug Domain J155_03358 PF00593 TonB dependent receptor J155_03360 PF17871 AAA lid domain J155_03360 PF07724 AAA domain (Cdc48 subfamily) J155_03360 PF00004 ATPase family associated with various cellular activities (AAA) J155_03360 PF02861 Clp amino terminal domain, pathogenicity island component J155_03360 PF10431 C-terminal, D2-small domain, of ClpB protein J155_03361 PF00005 ABC transporter J155_03362 PF00528 Binding-protein-dependent transport system inner membrane component J155_03363 PF09084 NMT1/THI5 like J155_03364 PF00248 Aldo/keto reductase family J155_03366 PF07715 TonB-dependent Receptor Plug Domain J155_03366 PF00593 TonB dependent receptor J155_03367 PF01541 GIY-YIG catalytic domain J155_03374 PF00593 TonB dependent receptor J155_03374 PF07715 TonB-dependent Receptor Plug Domain J155_03375 PF02358 Trehalose-phosphatase J155_03376 PF00723 Glycosyl hydrolases family 15 J155_03377 PF00982 Glycosyltransferase family 20 J155_03378 PF01011 PQQ enzyme repeat J155_03379 PF02203 Tar ligand binding domain homologue J155_03379 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_03379 PF00672 HAMP domain J155_03380 PF04134 Protein of unknown function, DUF393 J155_03383 PF00849 RNA pseudouridylate synthase J155_03384 PF13525 Outer membrane lipoprotein J155_03386 PF02540 NAD synthase J155_03386 PF00795 Carbon-nitrogen hydrolase J155_03388 PF01527 Transposase J155_03389 PF13276 HTH-like domain J155_03389 PF00665 Integrase core domain J155_03389 PF13333 Integrase core domain J155_03392 PF13406 Transglycosylase SLT domain J155_03393 PF13700 Domain of unknown function (DUF4158) J155_03393 PF01526 Tn3 transposase DDE domain J155_03397 PF01129 NAD:arginine ADP-ribosyltransferase J155_03402 PF00549 CoA-ligase J155_03402 PF02629 CoA binding domain J155_03403 PF08442 ATP-grasp domain J155_03403 PF00549 CoA-ligase J155_03404 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_03404 PF00512 His Kinase A (phospho-acceptor) domain J155_03405 PF02954 Bacterial regulatory protein, Fis family J155_03405 PF00072 Response regulator receiver domain J155_03405 PF00158 Sigma-54 interaction domain J155_03407 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J155_03407 PF00437 Type II/IV secretion system protein J155_03408 PF00437 Type II/IV secretion system protein J155_03408 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J155_03409 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J155_03409 PF00437 Type II/IV secretion system protein J155_03410 PF07963 Prokaryotic N-terminal methylation motif J155_03410 PF00114 Pilin (bacterial filament) J155_03411 PF07963 Prokaryotic N-terminal methylation motif J155_03411 PF00114 Pilin (bacterial filament) J155_03412 PF00482 Type II secretion system (T2SS), protein F J155_03413 PF01478 Type IV leader peptidase family J155_03413 PF06750 Bacterial Peptidase A24 N-terminal domain J155_03414 PF01121 Dephospho-CoA kinase J155_03417 PF01527 Transposase J155_03418 PF13333 Integrase core domain J155_03418 PF00665 Integrase core domain J155_03418 PF13276 HTH-like domain J155_03419 PF00512 His Kinase A (phospho-acceptor) domain J155_03419 PF00989 PAS fold J155_03419 PF16736 Single Cache-like J155_03419 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_03420 PF00486 Transcriptional regulatory protein, C terminal J155_03420 PF00072 Response regulator receiver domain J155_03422 PF08443 RimK-like ATP-grasp domain J155_03422 PF18030 RimK PreATP-grasp domain J155_03423 PF00128 Alpha amylase, catalytic domain J155_03423 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J155_03436 PF04002 RadC-like JAB domain J155_03441 PF00072 Response regulator receiver domain J155_03441 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_03441 PF13426 PAS domain J155_03442 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_03442 PF00072 Response regulator receiver domain J155_03442 PF13426 PAS domain J155_03448 PF01527 Transposase J155_03457 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_03457 PF00512 His Kinase A (phospho-acceptor) domain J155_03457 PF00072 Response regulator receiver domain J155_03457 PF13188 PAS domain J155_03457 PF08448 PAS fold J155_03461 PF13676 TIR domain J155_03464 PF00657 GDSL-like Lipase/Acylhydrolase J155_03464 PF03797 Autotransporter beta-domain J155_03466 PF05690 Thiazole biosynthesis protein ThiG J155_03467 PF02390 Putative methyltransferase J155_03468 PF03600 Citrate transporter J155_03468 PF02080 TrkA-C domain J155_03471 PF01557 Fumarylacetoacetate (FAA) hydrolase family J155_03472 PF01741 Large-conductance mechanosensitive channel, MscL J155_03474 PF00356 Bacterial regulatory proteins, lacI family J155_03476 PF00703 Glycosyl hydrolases family 2 J155_03476 PF02837 Glycosyl hydrolases family 2, sugar binding domain J155_03476 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain J155_03477 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation J155_03477 PF14508 Glycosyl-hydrolase 97 N-terminal J155_03477 PF10566 Glycoside hydrolase 97 J155_03479 PF00135 Carboxylesterase family J155_03480 PF08032 RNA 2'-O ribose methyltransferase substrate binding J155_03480 PF00588 SpoU rRNA Methylase family J155_03482 PF11838 ERAP1-like C-terminal domain J155_03482 PF01433 Peptidase family M1 domain J155_03484 PF13333 Integrase core domain J155_03484 PF13276 HTH-like domain J155_03484 PF00665 Integrase core domain J155_03485 PF01527 Transposase J155_03491 PF00873 AcrB/AcrD/AcrF family J155_03492 PF00529 HlyD membrane-fusion protein of T1SS J155_03492 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J155_03493 PF00009 Elongation factor Tu GTP binding domain J155_03494 PF01507 Phosphoadenosine phosphosulfate reductase family J155_03495 PF00175 Oxidoreductase NAD-binding domain J155_03495 PF00258 Flavodoxin J155_03495 PF00667 FAD binding domain J155_03496 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J155_03496 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J155_03497 PF01507 Phosphoadenosine phosphosulfate reductase family J155_03501 PF00072 Response regulator receiver domain J155_03501 PF01627 Hpt domain J155_03501 PF00512 His Kinase A (phospho-acceptor) domain J155_03501 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_03503 PF03466 LysR substrate binding domain J155_03503 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_03504 PF10414 Sirohaem synthase dimerisation region J155_03504 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J155_03504 PF14824 Sirohaem biosynthesis protein central J155_03505 PF00291 Pyridoxal-phosphate dependent enzyme J155_03507 PF01661 Macro domain J155_03508 PF00274 Fructose-bisphosphate aldolase class-I J155_03509 PF02887 Pyruvate kinase, alpha/beta domain J155_03509 PF00224 Pyruvate kinase, barrel domain J155_03511 PF00162 Phosphoglycerate kinase J155_03516 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J155_03516 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J155_03518 PF03922 OmpW family J155_03519 PF03922 OmpW family J155_03521 PF04273 Putative phosphatase (DUF442) J155_03521 PF00753 Metallo-beta-lactamase superfamily J155_03523 PF00528 Binding-protein-dependent transport system inner membrane component J155_03524 PF03459 TOBE domain J155_03524 PF00005 ABC transporter J155_03531 PF01476 LysM domain J155_03531 PF03734 L,D-transpeptidase catalytic domain J155_03532 PF01551 Peptidase family M23 J155_03532 PF04225 Opacity-associated protein A LysM-like domain J155_03534 PF00593 TonB dependent receptor J155_03534 PF07715 TonB-dependent Receptor Plug Domain J155_03535 PF12146 Serine aminopeptidase, S33 J155_03536 PF02780 Transketolase, C-terminal domain J155_03536 PF02779 Transketolase, pyrimidine binding domain J155_03536 PF00456 Transketolase, thiamine diphosphate binding domain J155_03537 PF00375 Sodium:dicarboxylate symporter family J155_03539 PF07584 Aerotolerance regulator N-terminal J155_03539 PF00092 von Willebrand factor type A domain J155_03543 PF07726 ATPase family associated with various cellular activities (AAA) J155_03543 PF17863 AAA lid domain J155_03545 PF00263 Bacterial type II and III secretion system protein J155_03545 PF11741 AMIN domain J155_03545 PF07660 Secretin and TonB N terminus short domain J155_03545 PF03958 Bacterial type II/III secretion system short domain J155_03550 PF00912 Transglycosylase J155_03550 PF17092 Penicillin-binding protein OB-like domain J155_03550 PF00905 Penicillin binding protein transpeptidase domain J155_03553 PF00285 Citrate synthase, C-terminal domain J155_03554 PF01197 Ribosomal protein L31 J155_03555 PF01156 Inosine-uridine preferring nucleoside hydrolase J155_03556 PF00270 DEAD/DEAH box helicase J155_03556 PF00271 Helicase conserved C-terminal domain J155_03556 PF17191 RecG wedge domain J155_03557 PF01042 Endoribonuclease L-PSP J155_03558 PF04607 Region found in RelA / SpoT proteins J155_03558 PF02824 TGS domain J155_03558 PF13291 ACT domain J155_03559 PF01192 RNA polymerase Rpb6 J155_03560 PF00625 Guanylate kinase J155_03561 PF03755 YicC-like family, N-terminal region J155_03561 PF08340 Domain of unknown function (DUF1732) J155_03562 PF03725 3' exoribonuclease family, domain 2 J155_03562 PF01138 3' exoribonuclease family, domain 1 J155_03564 PF01725 Ham1 family J155_03565 PF04055 Radical SAM superfamily J155_03565 PF06969 HemN C-terminal domain J155_03568 PF00557 Metallopeptidase family M24 J155_03570 PF05195 Aminopeptidase P, N-terminal domain J155_03570 PF00557 Metallopeptidase family M24 J155_03571 PF03695 Uncharacterised protein family (UPF0149) J155_03573 PF05164 Cell division protein ZapA J155_03575 PF01812 5-formyltetrahydrofolate cyclo-ligase family J155_03577 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J155_03579 PF13369 Transglutaminase-like superfamily J155_03580 PF00301 Rubredoxin J155_03581 PF02581 Thiamine monophosphate synthase J155_03584 PF00202 Aminotransferase class-III J155_03585 PF00196 Bacterial regulatory proteins, luxR family J155_03585 PF17874 MalT-like TPR region J155_03586 PF00127 Copper binding proteins, plastocyanin/azurin family J155_03587 PF00155 Aminotransferase class I and II J155_03589 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J155_03589 PF00034 Cytochrome c J155_03590 PF01593 Flavin containing amine oxidoreductase J155_03593 PF00202 Aminotransferase class-III J155_03594 PF00027 Cyclic nucleotide-binding domain J155_03594 PF00520 Ion transport protein J155_03597 PF01569 PAP2 superfamily J155_03598 PF01062 Bestrophin, RFP-TM, chloride channel J155_03600 PF01225 Mur ligase family, catalytic domain J155_03600 PF08245 Mur ligase middle domain J155_03600 PF02875 Mur ligase family, glutamate ligase domain J155_03602 PF00365 Phosphofructokinase J155_03604 PF03030 Inorganic H+ pyrophosphatase J155_03606 PF00719 Inorganic pyrophosphatase J155_03608 PF00593 TonB dependent receptor J155_03608 PF07715 TonB-dependent Receptor Plug Domain J155_03609 PF12833 Helix-turn-helix domain J155_03610 PF18500 CadC C-terminal domain 1 J155_03610 PF00486 Transcriptional regulatory protein, C terminal J155_03611 PF13667 ThiC-associated domain J155_03611 PF01964 Radical SAM ThiC family J155_03613 PF07715 TonB-dependent Receptor Plug Domain J155_03613 PF00593 TonB dependent receptor J155_03614 PF00672 HAMP domain J155_03614 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_03614 PF02203 Tar ligand binding domain homologue J155_03616 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J155_03616 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J155_03617 PF00205 Thiamine pyrophosphate enzyme, central domain J155_03617 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J155_03617 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J155_03619 PF00291 Pyridoxal-phosphate dependent enzyme J155_03620 PF00682 HMGL-like J155_03620 PF08502 LeuA allosteric (dimerisation) domain J155_03621 PF00180 Isocitrate/isopropylmalate dehydrogenase J155_03622 PF00694 Aconitase C-terminal domain J155_03623 PF00330 Aconitase family (aconitate hydratase) J155_03624 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_03625 PF00990 Diguanylate cyclase, GGDEF domain J155_03625 PF17151 Periplasmic sensor domain J155_03628 PF02321 Outer membrane efflux protein J155_03629 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) J155_03630 PF03279 Bacterial lipid A biosynthesis acyltransferase J155_03635 PF01515 Phosphate acetyl/butaryl transferase J155_03635 PF03949 Malic enzyme, NAD binding domain J155_03635 PF00390 Malic enzyme, N-terminal domain J155_03636 PF00375 Sodium:dicarboxylate symporter family J155_03638 PF00512 His Kinase A (phospho-acceptor) domain J155_03638 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_03638 PF02743 Cache domain J155_03639 PF07690 Major Facilitator Superfamily J155_03641 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_03641 PF03466 LysR substrate binding domain J155_03642 PF00248 Aldo/keto reductase family J155_03646 PF00196 Bacterial regulatory proteins, luxR family J155_03646 PF00072 Response regulator receiver domain J155_03648 PF00512 His Kinase A (phospho-acceptor) domain J155_03648 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_03648 PF08521 Two-component sensor kinase N-terminal J155_03649 PF00072 Response regulator receiver domain J155_03649 PF00486 Transcriptional regulatory protein, C terminal J155_03651 PF03600 Citrate transporter J155_03653 PF00106 short chain dehydrogenase J155_03654 PF00356 Bacterial regulatory proteins, lacI family J155_03657 PF00128 Alpha amylase, catalytic domain J155_03660 PF03193 RsgA GTPase J155_03664 PF00593 TonB dependent receptor J155_03664 PF07715 TonB-dependent Receptor Plug Domain J155_03665 PF01522 Polysaccharide deacetylase J155_03666 PF00462 Glutaredoxin J155_03669 PF01527 Transposase J155_03674 PF02645 Uncharacterised protein, DegV family COG1307 J155_03675 PF01327 Polypeptide deformylase J155_03676 PF03960 ArsC family J155_03679 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) J155_03680 PF01270 Glycosyl hydrolases family 8 J155_03681 PF03170 Bacterial cellulose synthase subunit J155_03682 PF03552 Cellulose synthase J155_03682 PF00535 Glycosyl transferase family 2 J155_03682 PF07238 PilZ domain J155_03685 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family J155_03685 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain J155_03692 PF07715 TonB-dependent Receptor Plug Domain J155_03692 PF00593 TonB dependent receptor J155_03694 PF00392 Bacterial regulatory proteins, gntR family J155_03694 PF07702 UTRA domain J155_03696 PF00263 Bacterial type II and III secretion system protein J155_03696 PF03958 Bacterial type II/III secretion system short domain J155_03698 PF10741 Type II secretion system (T2SS), protein M subtype b J155_03699 PF05137 Fimbrial assembly protein (PilN) J155_03700 PF03934 Type II secretion system (T2SS), protein K J155_03702 PF07963 Prokaryotic N-terminal methylation motif J155_03703 PF12019 Type II transport protein GspH J155_03704 PF08334 Type II secretion system (T2SS), protein G J155_03705 PF00482 Type II secretion system (T2SS), protein F J155_03706 PF00437 Type II/IV secretion system protein J155_03706 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J155_03707 PF00082 Subtilase family J155_03707 PF04151 Bacterial pre-peptidase C-terminal domain J155_03708 PF13018 Extended Signal Peptide of Type V secretion system J155_03708 PF03895 YadA-like membrane anchor domain J155_03708 PF05658 Head domain of trimeric autotransporter adhesin J155_03708 PF05662 Coiled stalk of trimeric autotransporter adhesin J155_03709 PF00082 Subtilase family J155_03709 PF04151 Bacterial pre-peptidase C-terminal domain J155_03710 PF05662 Coiled stalk of trimeric autotransporter adhesin J155_03710 PF05658 Head domain of trimeric autotransporter adhesin J155_03710 PF03895 YadA-like membrane anchor domain J155_03710 PF13018 Extended Signal Peptide of Type V secretion system J155_03711 PF02769 AIR synthase related protein, C-terminal domain J155_03711 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J155_03711 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal J155_03712 PF10411 Disulfide bond isomerase protein N-terminus J155_03712 PF13098 Thioredoxin-like domain J155_03713 PF00589 Phage integrase family J155_03713 PF02899 Phage integrase, N-terminal SAM-like domain J155_03716 PF03739 Lipopolysaccharide export system permease LptF/LptG J155_03718 PF02789 Cytosol aminopeptidase family, N-terminal domain J155_03718 PF00883 Cytosol aminopeptidase family, catalytic domain J155_03721 PF00133 tRNA synthetases class I (I, L, M and V) J155_03721 PF08264 Anticodon-binding domain of tRNA J155_03721 PF10458 Valyl tRNA synthetase tRNA binding arm J155_03722 PF00593 TonB dependent receptor J155_03722 PF07715 TonB-dependent Receptor Plug Domain J155_03723 PF01464 Transglycosylase SLT domain J155_03723 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J155_03724 PF00544 Pectate lyase J155_03727 PF01066 CDP-alcohol phosphatidyltransferase J155_03729 PF03129 Anticodon binding domain J155_03729 PF04073 Aminoacyl-tRNA editing domain J155_03729 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J155_03730 PF00816 H-NS histone family J155_03732 PF02405 Permease MlaE J155_03733 PF00005 ABC transporter J155_03734 PF02470 MlaD protein J155_03734 PF03886 ABC-type transport auxiliary lipoprotein component J155_03738 PF05045 Rhamnan synthesis protein F J155_03738 PF14307 Glycosyltransferase WbsX J155_03739 PF01144 Coenzyme A transferase J155_03740 PF01144 Coenzyme A transferase J155_03741 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J155_03741 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J155_03741 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J155_03741 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J155_03742 PF00483 Nucleotidyl transferase J155_03742 PF01050 Mannose-6-phosphate isomerase J155_03743 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J155_03743 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J155_03743 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J155_03744 PF04321 RmlD substrate binding domain J155_03745 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase J155_03746 PF00483 Nucleotidyl transferase J155_03747 PF16363 GDP-mannose 4,6 dehydratase J155_03748 PF01012 Electron transfer flavoprotein domain J155_03749 PF00766 Electron transfer flavoprotein FAD-binding domain J155_03749 PF01012 Electron transfer flavoprotein domain J155_03751 PF01040 UbiA prenyltransferase family J155_03752 PF04030 D-arabinono-1,4-lactone oxidase J155_03752 PF01565 FAD binding domain J155_03753 PF00106 short chain dehydrogenase J155_03755 PF01370 NAD dependent epimerase/dehydratase family J155_03756 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J155_03756 PF07992 Pyridine nucleotide-disulphide oxidoreductase J155_03761 PF00535 Glycosyl transferase family 2 J155_03763 PF00005 ABC transporter J155_03763 PF14524 Wzt C-terminal domain J155_03765 PF01053 Cys/Met metabolism PLP-dependent enzyme J155_03766 PF00291 Pyridoxal-phosphate dependent enzyme J155_03766 PF00571 CBS domain J155_03770 PF00437 Type II/IV secretion system protein J155_03771 PF14497 Glutathione S-transferase, C-terminal domain J155_03771 PF02798 Glutathione S-transferase, N-terminal domain J155_03773 PF00270 DEAD/DEAH box helicase J155_03773 PF00271 Helicase conserved C-terminal domain J155_03776 PF07715 TonB-dependent Receptor Plug Domain J155_03776 PF00593 TonB dependent receptor J155_03777 PF01242 6-pyruvoyl tetrahydropterin synthase J155_03780 PF13185 GAF domain J155_03782 PF00756 Putative esterase J155_03783 PF07715 TonB-dependent Receptor Plug Domain J155_03783 PF00593 TonB dependent receptor J155_03784 PF13419 Haloacid dehalogenase-like hydrolase J155_03785 PF00817 impB/mucB/samB family J155_03785 PF11799 impB/mucB/samB family C-terminal domain J155_03786 PF07977 FabA-like domain J155_03787 PF02801 Beta-ketoacyl synthase, C-terminal domain J155_03787 PF00109 Beta-ketoacyl synthase, N-terminal domain J155_03789 PF01432 Peptidase family M3 J155_03792 PF00394 Multicopper oxidase J155_03792 PF07731 Multicopper oxidase J155_03792 PF07732 Multicopper oxidase J155_03793 PF05275 Copper resistance protein B precursor (CopB) J155_03794 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J155_03800 PF01380 SIS domain J155_03801 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J155_03802 PF00005 ABC transporter J155_03802 PF02687 FtsX-like permease family J155_03802 PF12704 MacB-like periplasmic core domain J155_03803 PF02687 FtsX-like permease family J155_03803 PF12704 MacB-like periplasmic core domain J155_03803 PF00005 ABC transporter J155_03804 PF12704 MacB-like periplasmic core domain J155_03804 PF02687 FtsX-like permease family J155_03806 PF00158 Sigma-54 interaction domain J155_03806 PF00072 Response regulator receiver domain J155_03807 PF12804 MobA-like NTP transferase domain J155_03807 PF00132 Bacterial transferase hexapeptide (six repeats) J155_03807 PF14602 Hexapeptide repeat of succinyl-transferase J155_03810 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J155_03810 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J155_03811 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J155_03811 PF02874 ATP synthase alpha/beta family, beta-barrel domain J155_03812 PF00231 ATP synthase J155_03813 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J155_03813 PF00306 ATP synthase alpha/beta chain, C terminal domain J155_03813 PF02874 ATP synthase alpha/beta family, beta-barrel domain J155_03814 PF00213 ATP synthase delta (OSCP) subunit J155_03815 PF00430 ATP synthase B/B' CF(0) J155_03816 PF00137 ATP synthase subunit C J155_03817 PF00119 ATP synthase A chain J155_03821 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J155_03821 PF07992 Pyridine nucleotide-disulphide oxidoreductase J155_03823 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J155_03823 PF02817 e3 binding domain J155_03823 PF00364 Biotin-requiring enzyme J155_03829 PF03180 NLPA lipoprotein J155_03830 PF00528 Binding-protein-dependent transport system inner membrane component J155_03831 PF00005 ABC transporter J155_03831 PF09383 NIL domain J155_03832 PF00892 EamA-like transporter family J155_03833 PF04461 Protein of unknown function (DUF520) J155_03835 PF00989 PAS fold J155_03835 PF01627 Hpt domain J155_03835 PF00072 Response regulator receiver domain J155_03835 PF18415 Histidine kinase receptor ArcB trans-membrane domain J155_03835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_03835 PF00512 His Kinase A (phospho-acceptor) domain J155_03839 PF13419 Haloacid dehalogenase-like hydrolase J155_03840 PF01479 S4 domain J155_03840 PF00849 RNA pseudouridylate synthase J155_03841 PF05175 Methyltransferase small domain J155_03841 PF08468 Methyltransferase small domain N-terminal J155_03843 PF07995 Glucose / Sorbosone dehydrogenase J155_03845 PF00989 PAS fold J155_03845 PF00512 His Kinase A (phospho-acceptor) domain J155_03845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_03849 PF00842 Alanine racemase, C-terminal domain J155_03849 PF01168 Alanine racemase, N-terminal domain J155_03850 PF01266 FAD dependent oxidoreductase J155_03851 PF01037 Lrp/AsnC ligand binding domain J155_03853 PF01641 SelR domain J155_03855 PF01618 MotA/TolQ/ExbB proton channel family J155_03856 PF00691 OmpA family J155_03856 PF13677 Membrane MotB of proton-channel complex MotA/MotB J155_03861 PF01061 ABC-2 type transporter J155_03862 PF00005 ABC transporter J155_03863 PF00999 Sodium/hydrogen exchanger family J155_03864 PF02469 Fasciclin domain J155_03865 PF03167 Uracil DNA glycosylase superfamily J155_03867 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J155_03869 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_03869 PF03466 LysR substrate binding domain J155_03870 PF03358 NADPH-dependent FMN reductase J155_03871 PF00248 Aldo/keto reductase family J155_03873 PF05649 Peptidase family M13 J155_03873 PF01431 Peptidase family M13 J155_03877 PF13520 Amino acid permease J155_03879 PF00072 Response regulator receiver domain J155_03879 PF04397 LytTr DNA-binding domain J155_03880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_03880 PF06580 Histidine kinase J155_03880 PF00672 HAMP domain J155_03880 PF02743 Cache domain J155_03883 PF05974 Domain of unknown function (DUF892) J155_03884 PF05067 Manganese containing catalase J155_03887 PF03705 CheR methyltransferase, all-alpha domain J155_03887 PF01739 CheR methyltransferase, SAM binding domain J155_03887 PF01339 CheB methylesterase J155_03887 PF08448 PAS fold J155_03890 PF00072 Response regulator receiver domain J155_03890 PF00158 Sigma-54 interaction domain J155_03890 PF02954 Bacterial regulatory protein, Fis family J155_03892 PF01654 Cytochrome bd terminal oxidase subunit I J155_03893 PF02322 Cytochrome bd terminal oxidase subunit II J155_03897 PF16363 GDP-mannose 4,6 dehydratase J155_03899 PF03275 UDP-galactopyranose mutase J155_03901 PF00664 ABC transporter transmembrane region J155_03901 PF00005 ABC transporter J155_03904 PF08240 Alcohol dehydrogenase GroES-like domain J155_03904 PF00107 Zinc-binding dehydrogenase J155_03904 PF13823 Alcohol dehydrogenase GroES-associated J155_03913 PF07715 TonB-dependent Receptor Plug Domain J155_03913 PF00593 TonB dependent receptor J155_03916 PF00005 ABC transporter J155_03918 PF03466 LysR substrate binding domain J155_03918 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_03919 PF01042 Endoribonuclease L-PSP J155_03921 PF01527 Transposase J155_03925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J155_03925 PF02203 Tar ligand binding domain homologue J155_03925 PF00672 HAMP domain J155_03928 PF03466 LysR substrate binding domain J155_03928 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_03929 PF02525 Flavodoxin-like fold J155_03938 PF00557 Metallopeptidase family M24 J155_03943 PF03979 Sigma-70 factor, region 1.1 J155_03943 PF04545 Sigma-70, region 4 J155_03943 PF04546 Sigma-70, non-essential region J155_03943 PF00140 Sigma-70 factor, region 1.2 J155_03943 PF04539 Sigma-70 region 3 J155_03943 PF04542 Sigma-70 region 2 J155_03944 PF02580 D-Tyr-tRNA(Tyr) deacylase J155_03945 PF03279 Bacterial lipid A biosynthesis acyltransferase J155_03947 PF00925 GTP cyclohydrolase II J155_03951 PF00535 Glycosyl transferase family 2 J155_03954 PF01189 16S rRNA methyltransferase RsmB/F J155_03954 PF01029 NusB family J155_03955 PF00551 Formyl transferase J155_03955 PF02911 Formyl transferase, C-terminal domain J155_03956 PF01327 Polypeptide deformylase J155_03957 PF01476 LysM domain J155_03958 PF02481 DNA recombination-mediator protein A J155_03958 PF17782 DprA winged helix domain J155_03959 PF04361 Protein of unknown function (DUF494) J155_03960 PF07963 Prokaryotic N-terminal methylation motif J155_03960 PF00114 Pilin (bacterial filament) J155_03962 PF13368 Topoisomerase C-terminal repeat J155_03962 PF01751 Toprim domain J155_03962 PF01131 DNA topoisomerase J155_03963 PF01300 Telomere recombination J155_03968 PF01343 Peptidase family S49 J155_03969 PF01554 MatE J155_03973 PF00270 DEAD/DEAH box helicase J155_03973 PF00271 Helicase conserved C-terminal domain J155_03973 PF17764 3′ DNA-binding domain (3′BD) J155_03973 PF18074 Primosomal protein N C-terminal domain J155_03973 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J155_03974 PF13417 Glutathione S-transferase, N-terminal domain J155_03974 PF00043 Glutathione S-transferase, C-terminal domain J155_03977 PF07992 Pyridine nucleotide-disulphide oxidoreductase J155_03978 PF03458 UPF0126 domain J155_03979 PF04545 Sigma-70, region 4 J155_03979 PF04542 Sigma-70 region 2 J155_03980 PF03167 Uracil DNA glycosylase superfamily J155_03981 PF01339 CheB methylesterase J155_03981 PF00072 Response regulator receiver domain J155_03982 PF18075 FtsX extracellular domain J155_03983 PF00005 ABC transporter J155_03984 PF12300 ATP-dependent RNA helicase RhlB J155_03984 PF00271 Helicase conserved C-terminal domain J155_03984 PF00270 DEAD/DEAH box helicase J155_03985 PF00085 Thioredoxin J155_03986 PF07498 Rho termination factor, N-terminal domain J155_03986 PF07497 Rho termination factor, RNA-binding domain J155_03986 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J155_03987 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) J155_03988 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_03988 PF03466 LysR substrate binding domain J155_03990 PF03971 Monomeric isocitrate dehydrogenase J155_03993 PF09704 CRISPR-associated protein (Cas_Cas5) J155_03998 PF01867 CRISPR associated protein Cas1 J155_03999 PF09827 CRISPR associated protein Cas2 J155_04001 PF01476 LysM domain J155_04001 PF04972 BON domain J155_04002 PF14489 QueF-like protein J155_04002 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J155_04003 PF07687 Peptidase dimerisation domain J155_04003 PF01546 Peptidase family M20/M25/M40 J155_04004 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J155_04005 PF00873 AcrB/AcrD/AcrF family J155_04006 PF00873 AcrB/AcrD/AcrF family J155_04007 PF07063 Domain of unknown function (DUF1338) J155_04015 PF01427 D-ala-D-ala dipeptidase J155_04016 PF01510 N-acetylmuramoyl-L-alanine amidase J155_04018 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J155_04018 PF13378 Enolase C-terminal domain-like J155_04020 PF13520 Amino acid permease J155_04023 PF05360 yiaA/B two helix domain J155_04024 PF07995 Glucose / Sorbosone dehydrogenase J155_04025 PF14310 Fibronectin type III-like domain J155_04025 PF00933 Glycosyl hydrolase family 3 N terminal domain J155_04025 PF01915 Glycosyl hydrolase family 3 C-terminal domain J155_04026 PF02152 Dihydroneopterin aldolase J155_04027 PF00814 Glycoprotease family J155_04028 PF01165 Ribosomal protein S21 J155_04029 PF09424 Yqey-like protein J155_04030 PF03631 Virulence factor BrkB J155_04031 PF10410 DnaB-helicase binding domain of primase J155_04031 PF08278 DNA primase DnaG DnaB-binding J155_04031 PF08275 DNA primase catalytic core, N-terminal domain J155_04031 PF01807 CHC2 zinc finger J155_04032 PF13593 SBF-like CPA transporter family (DUF4137) J155_04034 PF01040 UbiA prenyltransferase family J155_04039 PF00510 Cytochrome c oxidase subunit III J155_04040 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 J155_04042 PF00115 Cytochrome C and Quinol oxidase polypeptide I J155_04043 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J155_04043 PF02790 Cytochrome C oxidase subunit II, transmembrane domain J155_04045 PF14850 DNA-binding domain of Proline dehydrogenase J155_04045 PF01619 Proline dehydrogenase J155_04045 PF00171 Aldehyde dehydrogenase family J155_04045 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J155_04053 PF00579 tRNA synthetases class I (W and Y) J155_04054 PF01551 Peptidase family M23 J155_04054 PF04225 Opacity-associated protein A LysM-like domain J155_04055 PF03702 Anhydro-N-acetylmuramic acid kinase J155_04057 PF07690 Major Facilitator Superfamily J155_04058 PF03372 Endonuclease/Exonuclease/phosphatase family J155_04059 PF00156 Phosphoribosyl transferase domain J155_04061 PF13614 AAA domain J155_04062 PF17762 HTH domain found in ParB protein J155_04062 PF02195 ParB-like nuclease domain J155_04064 PF01370 NAD dependent epimerase/dehydratase family J155_04065 PF00535 Glycosyl transferase family 2 J155_04068 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J155_04068 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J155_04068 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J155_04068 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J155_04069 PF00692 dUTPase J155_04070 PF04127 DNA / pantothenate metabolism flavoprotein J155_04070 PF02441 Flavoprotein J155_04071 PF04002 RadC-like JAB domain J155_04072 PF00750 tRNA synthetases class I (R) J155_04072 PF03485 Arginyl tRNA synthetase N terminal domain J155_04072 PF05746 DALR anticodon binding domain J155_04075 PF00106 short chain dehydrogenase J155_04076 PF01757 Acyltransferase family J155_04077 PF03033 Glycosyltransferase family 28 N-terminal domain J155_04078 PF13193 AMP-binding enzyme C-terminal domain J155_04078 PF00550 Phosphopantetheine attachment site J155_04078 PF00975 Thioesterase domain J155_04078 PF00501 AMP-binding enzyme J155_04078 PF00668 Condensation domain J155_04079 PF17810 Arginine decarboxylase helical bundle domain J155_04079 PF17944 Arginine decarboxylase C-terminal helical extension J155_04079 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J155_04080 PF17284 Spermidine synthase tetramerisation domain J155_04085 PF00543 Nitrogen regulatory protein P-II J155_04086 PF04380 Membrane fusogenic activity J155_04087 PF13335 Magnesium chelatase, subunit ChlI C-terminal J155_04087 PF01078 Magnesium chelatase, subunit ChlI J155_04090 PF12792 CSS motif domain associated with EAL J155_04090 PF00563 EAL domain J155_04091 PF00487 Fatty acid desaturase J155_04092 PF00175 Oxidoreductase NAD-binding domain J155_04092 PF00970 Oxidoreductase FAD-binding domain J155_04092 PF00111 2Fe-2S iron-sulfur cluster binding domain J155_04093 PF00440 Bacterial regulatory proteins, tetR family J155_04099 PF01139 tRNA-splicing ligase RtcB J155_04107 PF08338 Domain of unknown function (DUF1731) J155_04107 PF01370 NAD dependent epimerase/dehydratase family J155_04108 PF00486 Transcriptional regulatory protein, C terminal J155_04108 PF00072 Response regulator receiver domain J155_04109 PF08521 Two-component sensor kinase N-terminal J155_04109 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_04109 PF00512 His Kinase A (phospho-acceptor) domain J155_04113 PF00595 PDZ domain J155_04117 PF01594 AI-2E family transporter J155_04118 PF13419 Haloacid dehalogenase-like hydrolase J155_04119 PF00883 Cytosol aminopeptidase family, catalytic domain J155_04119 PF02789 Cytosol aminopeptidase family, N-terminal domain J155_04121 PF04542 Sigma-70 region 2 J155_04121 PF08281 Sigma-70, region 4 J155_04122 PF00199 Catalase J155_04125 PF00196 Bacterial regulatory proteins, luxR family J155_04125 PF00072 Response regulator receiver domain J155_04126 PF07730 Histidine kinase J155_04127 PF13533 Biotin-lipoyl like J155_04128 PF00005 ABC transporter J155_04132 PF00892 EamA-like transporter family J155_04133 PF00892 EamA-like transporter family J155_04134 PF00892 EamA-like transporter family J155_04137 PF00753 Metallo-beta-lactamase superfamily J155_04138 PF00579 tRNA synthetases class I (W and Y) J155_04139 PF05532 CsbD-like J155_04142 PF00491 Arginase family J155_04147 PF02223 Thymidylate kinase J155_04150 PF03309 Type III pantothenate kinase J155_04151 PF02237 Biotin protein ligase C terminal domain J155_04151 PF03099 Biotin/lipoate A/B protein ligase family J155_04151 PF08279 HTH domain J155_04153 PF06167 Glucose-regulated metallo-peptidase M90 J155_04156 PF00672 HAMP domain J155_04156 PF00512 His Kinase A (phospho-acceptor) domain J155_04156 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_04157 PF00486 Transcriptional regulatory protein, C terminal J155_04157 PF00072 Response regulator receiver domain J155_04159 PF01207 Dihydrouridine synthase (Dus) J155_04162 PF00199 Catalase J155_04162 PF06628 Catalase-related immune-responsive J155_04163 PF13307 Helicase C-terminal domain J155_04163 PF06733 DEAD_2 J155_04166 PF01488 Shikimate / quinate 5-dehydrogenase J155_04166 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J155_04166 PF08501 Shikimate dehydrogenase substrate binding domain J155_04168 PF00175 Oxidoreductase NAD-binding domain J155_04168 PF00258 Flavodoxin J155_04168 PF00667 FAD binding domain J155_04170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_04170 PF03466 LysR substrate binding domain J155_04172 PF00490 Delta-aminolevulinic acid dehydratase J155_04176 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J155_04176 PF00326 Prolyl oligopeptidase family J155_04177 PF00043 Glutathione S-transferase, C-terminal domain J155_04177 PF02798 Glutathione S-transferase, N-terminal domain J155_04181 PF04820 Tryptophan halogenase J155_04184 PF00005 ABC transporter J155_04186 PF01381 Helix-turn-helix J155_04188 PF01229 Glycosyl hydrolases family 39 J155_04189 PF02583 Metal-sensitive transcriptional repressor J155_04190 PF16916 Dimerisation domain of Zinc Transporter J155_04190 PF01545 Cation efflux family J155_04192 PF07715 TonB-dependent Receptor Plug Domain J155_04192 PF00593 TonB dependent receptor J155_04194 PF01965 DJ-1/PfpI family J155_04194 PF12833 Helix-turn-helix domain J155_04195 PF00111 2Fe-2S iron-sulfur cluster binding domain J155_04195 PF00970 Oxidoreductase FAD-binding domain J155_04195 PF00175 Oxidoreductase NAD-binding domain J155_04196 PF00005 ABC transporter J155_04197 PF01061 ABC-2 type transporter J155_04199 PF02558 Ketopantoate reductase PanE/ApbA J155_04199 PF08546 Ketopantoate reductase PanE/ApbA C terminal J155_04205 PF00268 Ribonucleotide reductase, small chain J155_04206 PF03477 ATP cone domain J155_04206 PF02867 Ribonucleotide reductase, barrel domain J155_04206 PF00317 Ribonucleotide reductase, all-alpha domain J155_04208 PF13607 Succinyl-CoA ligase like flavodoxin domain J155_04208 PF13380 CoA binding domain J155_04208 PF00583 Acetyltransferase (GNAT) family J155_04209 PF00571 CBS domain J155_04209 PF01769 Divalent cation transporter J155_04209 PF03448 MgtE intracellular N domain J155_04210 PF00194 Eukaryotic-type carbonic anhydrase J155_04211 PF00999 Sodium/hydrogen exchanger family J155_04211 PF02254 TrkA-N domain J155_04212 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J155_04212 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J155_04213 PF00723 Glycosyl hydrolases family 15 J155_04216 PF05166 YcgL domain J155_04217 PF00109 Beta-ketoacyl synthase, N-terminal domain J155_04217 PF02801 Beta-ketoacyl synthase, C-terminal domain J155_04219 PF00535 Glycosyl transferase family 2 J155_04230 PF07977 FabA-like domain J155_04231 PF01553 Acyltransferase J155_04233 PF00550 Phosphopantetheine attachment site J155_04234 PF04820 Tryptophan halogenase J155_04238 PF00326 Prolyl oligopeptidase family J155_04238 PF07676 WD40-like Beta Propeller Repeat J155_04241 PF01218 Coproporphyrinogen III oxidase J155_04242 PF01367 5'-3' exonuclease, C-terminal SAM fold J155_04242 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J155_04242 PF00476 DNA polymerase family A J155_04242 PF01612 3'-5' exonuclease J155_04248 PF00069 Protein kinase domain J155_04248 PF03793 PASTA domain J155_04256 PF04717 Type VI secretion system, phage-baseplate injector J155_04259 PF00069 Protein kinase domain J155_04259 PF03793 PASTA domain J155_04261 PF08281 Sigma-70, region 4 J155_04261 PF04542 Sigma-70 region 2 J155_04264 PF00328 Histidine phosphatase superfamily (branch 2) J155_04271 PF07724 AAA domain (Cdc48 subfamily) J155_04271 PF17871 AAA lid domain J155_04271 PF10431 C-terminal, D2-small domain, of ClpB protein J155_04271 PF00004 ATPase family associated with various cellular activities (AAA) J155_04276 PF05638 Type VI secretion system effector, Hcp J155_04281 PF12464 Maltose acetyltransferase J155_04281 PF14602 Hexapeptide repeat of succinyl-transferase J155_04282 PF13361 UvrD-like helicase C-terminal domain J155_04282 PF00580 UvrD/REP helicase N-terminal domain J155_04284 PF13396 Phospholipase_D-nuclease N-terminal J155_04284 PF13091 PLD-like domain J155_04285 PF03466 LysR substrate binding domain J155_04285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_04286 PF03737 Aldolase/RraA J155_04287 PF04303 PrpF protein J155_04288 PF04909 Amidohydrolase J155_04289 PF00471 Ribosomal protein L33 J155_04290 PF00830 Ribosomal L28 family J155_04291 PF00873 AcrB/AcrD/AcrF family J155_04292 PF13533 Biotin-lipoyl like J155_04296 PF02527 rRNA small subunit methyltransferase G J155_04297 PF16655 PhoD-like phosphatase, N-terminal domain J155_04297 PF09423 PhoD-like phosphatase J155_04299 PF16655 PhoD-like phosphatase, N-terminal domain J155_04299 PF09423 PhoD-like phosphatase J155_04300 PF01648 4'-phosphopantetheinyl transferase superfamily J155_04301 PF04226 Transglycosylase associated protein J155_04303 PF03372 Endonuclease/Exonuclease/phosphatase family J155_04305 PF00480 ROK family J155_04307 PF09312 SurA N-terminal domain J155_04309 PF00474 Sodium:solute symporter family J155_04310 PF04341 Protein of unknown function, DUF485 J155_04312 PF16177 Acetyl-coenzyme A synthetase N-terminus J155_04312 PF00501 AMP-binding enzyme J155_04312 PF13193 AMP-binding enzyme C-terminal domain J155_04313 PF00072 Response regulator receiver domain J155_04313 PF00196 Bacterial regulatory proteins, luxR family J155_04318 PF04616 Glycosyl hydrolases family 43 J155_04318 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J155_04319 PF00248 Aldo/keto reductase family J155_04322 PF01557 Fumarylacetoacetate (FAA) hydrolase family J155_04323 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J155_04323 PF13378 Enolase C-terminal domain-like J155_04325 PF05336 L-rhamnose mutarotase J155_04326 PF07690 Major Facilitator Superfamily J155_04327 PF09339 IclR helix-turn-helix domain J155_04327 PF01614 Bacterial transcriptional regulator J155_04328 PF02659 Putative manganese efflux pump J155_04329 PF00512 His Kinase A (phospho-acceptor) domain J155_04329 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_04331 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J155_04331 PF06165 Glycosyltransferase family 36 J155_04334 PF01011 PQQ enzyme repeat J155_04334 PF13570 PQQ-like domain J155_04334 PF13360 PQQ-like domain J155_04338 PF04357 TamB, inner membrane protein subunit of TAM complex J155_04339 PF01103 Surface antigen J155_04339 PF17243 POTRA domain TamA domain 1 J155_04342 PF01527 Transposase J155_04343 PF13333 Integrase core domain J155_04343 PF00665 Integrase core domain J155_04343 PF13276 HTH-like domain J155_04344 PF00005 ABC transporter J155_04344 PF00664 ABC transporter transmembrane region J155_04344 PF03412 Peptidase C39 family J155_04346 PF05746 DALR anticodon binding domain J155_04346 PF02092 Glycyl-tRNA synthetase beta subunit J155_04347 PF02091 Glycyl-tRNA synthetase alpha subunit J155_04348 PF00437 Type II/IV secretion system protein J155_04348 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J155_04350 PF00958 GMP synthase C terminal domain J155_04350 PF00117 Glutamine amidotransferase class-I J155_04352 PF00902 Sec-independent protein translocase protein (TatC) J155_04353 PF02416 mttA/Hcf106 family J155_04354 PF02416 mttA/Hcf106 family J155_04356 PF00762 Ferrochelatase J155_04357 PF12697 Alpha/beta hydrolase family J155_04359 PF04381 Putative exonuclease, RdgC J155_04360 PF01171 PP-loop family J155_04362 PF00356 Bacterial regulatory proteins, lacI family J155_04363 PF03648 Glycosyl hydrolase family 67 N-terminus J155_04363 PF07477 Glycosyl hydrolase family 67 C-terminus J155_04363 PF07488 Glycosyl hydrolase family 67 middle domain J155_04365 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J155_04365 PF13378 Enolase C-terminal domain-like J155_04366 PF04616 Glycosyl hydrolases family 43 J155_04366 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J155_04367 PF14310 Fibronectin type III-like domain J155_04367 PF07691 PA14 domain J155_04367 PF01915 Glycosyl hydrolase family 3 C-terminal domain J155_04367 PF00933 Glycosyl hydrolase family 3 N terminal domain J155_04368 PF08125 Mannitol dehydrogenase C-terminal domain J155_04368 PF01232 Mannitol dehydrogenase Rossmann domain J155_04373 PF00171 Aldehyde dehydrogenase family J155_04376 PF00202 Aminotransferase class-III J155_04377 PF00202 Aminotransferase class-III J155_04379 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J155_04379 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J155_04382 PF08450 SMP-30/Gluconolactonase/LRE-like region J155_04383 PF00331 Glycosyl hydrolase family 10 J155_04384 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J155_04384 PF00703 Glycosyl hydrolases family 2 J155_04384 PF16355 Domain of unknown function (DUF4982) J155_04384 PF02837 Glycosyl hydrolases family 2, sugar binding domain J155_04384 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J155_04385 PF02614 Glucuronate isomerase J155_04386 PF03422 Carbohydrate binding module (family 6) J155_04386 PF00553 Cellulose binding domain J155_04386 PF00331 Glycosyl hydrolase family 10 J155_04388 PF00331 Glycosyl hydrolase family 10 J155_04388 PF03422 Carbohydrate binding module (family 6) J155_04388 PF00553 Cellulose binding domain J155_04392 PF04616 Glycosyl hydrolases family 43 J155_04402 PF08240 Alcohol dehydrogenase GroES-like domain J155_04402 PF00698 Acyl transferase domain J155_04402 PF16197 Ketoacyl-synthetase C-terminal extension J155_04402 PF08659 KR domain J155_04402 PF00550 Phosphopantetheine attachment site J155_04402 PF00107 Zinc-binding dehydrogenase J155_04402 PF14765 Polyketide synthase dehydratase J155_04402 PF02801 Beta-ketoacyl synthase, C-terminal domain J155_04402 PF00109 Beta-ketoacyl synthase, N-terminal domain J155_04403 PF01553 Acyltransferase J155_04405 PF00356 Bacterial regulatory proteins, lacI family J155_04408 PF04820 Tryptophan halogenase J155_04409 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J155_04410 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) J155_04412 PF04337 Protein of unknown function, DUF480 J155_04415 PF00580 UvrD/REP helicase N-terminal domain J155_04415 PF13361 UvrD-like helicase C-terminal domain J155_04416 PF00265 Thymidine kinase J155_04417 PF08446 PAS fold J155_04417 PF00512 His Kinase A (phospho-acceptor) domain J155_04417 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J155_04417 PF01590 GAF domain J155_04417 PF00360 Phytochrome region J155_04418 PF04349 Periplasmic glucan biosynthesis protein, MdoG J155_04420 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J155_04420 PF06827 Zinc finger found in FPG and IleRS J155_04420 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J155_04427 PF03594 Benzoate membrane transport protein J155_04428 PF00360 Phytochrome region J155_04428 PF13426 PAS domain J155_04428 PF08446 PAS fold J155_04428 PF01590 GAF domain J155_04429 PF01126 Heme oxygenase J155_04430 PF07690 Major Facilitator Superfamily J155_04431 PF01263 Aldose 1-epimerase J155_04433 PF02810 SEC-C motif J155_04434 PF01925 Sulfite exporter TauE/SafE J155_04438 PF01227 GTP cyclohydrolase I J155_04440 PF07869 Protein of unknown function (DUF1656) J155_04441 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J155_04441 PF00529 HlyD membrane-fusion protein of T1SS J155_04442 PF02321 Outer membrane efflux protein J155_04443 PF04632 Fusaric acid resistance protein family J155_04444 PF00083 Sugar (and other) transporter J155_04445 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family J155_04446 PF13396 Phospholipase_D-nuclease N-terminal J155_04446 PF13091 PLD-like domain J155_04451 PF01850 PIN domain J155_04456 PF00849 RNA pseudouridylate synthase J155_04458 PF01527 Transposase J155_04459 PF00665 Integrase core domain J155_04459 PF13333 Integrase core domain J155_04459 PF13276 HTH-like domain J155_04462 PF00289 Biotin carboxylase, N-terminal domain J155_04462 PF02785 Biotin carboxylase C-terminal domain J155_04462 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J155_04463 PF01425 Amidase J155_04470 PF13538 UvrD-like helicase C-terminal domain J155_04473 PF12705 PD-(D/E)XK nuclease superfamily J155_04473 PF00580 UvrD/REP helicase N-terminal domain J155_04473 PF13361 UvrD-like helicase C-terminal domain J155_04474 PF17946 RecC C-terminal domain J155_04476 PF00005 ABC transporter J155_04477 PF02405 Permease MlaE J155_04478 PF02470 MlaD protein J155_04479 PF05494 MlaC protein J155_04481 PF04333 MlaA lipoprotein J155_04483 PF00255 Glutathione peroxidase J155_04485 PF02646 RmuC family J155_04486 PF08240 Alcohol dehydrogenase GroES-like domain J155_04486 PF00107 Zinc-binding dehydrogenase J155_04487 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J155_04487 PF03466 LysR substrate binding domain J155_04489 PF13417 Glutathione S-transferase, N-terminal domain J155_04489 PF00043 Glutathione S-transferase, C-terminal domain J155_04491 PF13520 Amino acid permease J155_04492 PF07971 Glycosyl hydrolase family 92 J155_04492 PF17678 Glycosyl hydrolase family 92 N-terminal domain J155_04493 PF10947 Protein of unknown function (DUF2628) J155_04494 PF00990 Diguanylate cyclase, GGDEF domain J155_04495 PF05651 Putative sugar diacid recognition J155_04495 PF13556 PucR C-terminal helix-turn-helix domain J155_04495 PF17853 GGDEF-like domain J155_04496 PF02595 Glycerate kinase family J155_04497 PF07690 Major Facilitator Superfamily J155_04500 PF17785 PUA-like domain J155_04500 PF10672 S-adenosylmethionine-dependent methyltransferase J155_04502 PF03741 Integral membrane protein TerC family J155_04503 PF01694 Rhomboid family J155_04504 PF03009 Glycerophosphoryl diester phosphodiesterase family J155_04506 PF01569 PAP2 superfamily J155_04507 PF12631 MnmE helical domain J155_04507 PF01926 50S ribosome-binding GTPase J155_04507 PF10396 GTP-binding protein TrmE N-terminus J155_04508 PF01522 Polysaccharide deacetylase J155_04509 PF14849 YidC periplasmic domain J155_04509 PF02096 60Kd inner membrane protein J155_04510 PF00825 Ribonuclease P J155_04511 PF00468 Ribosomal protein L34