J155_00006 SM00857 Resolvase, N terminal domain J155_00007 SM00966 SpoVT / AbrB like domain J155_00029 SM00857 Resolvase, N terminal domain J155_00035 SM00670 Large family of predicted nucleotide-binding domains J155_00037 SM00857 Resolvase, N terminal domain J155_00097 SM00470 ParB-like nuclease domain J155_00104 SM00857 Resolvase, N terminal domain J155_00109 SM00670 Large family of predicted nucleotide-binding domains J155_00111 SM00857 Resolvase, N terminal domain J155_00112 SM00382 ATPases associated with a variety of cellular activities J155_00112 SM00760 Bacterial dnaA protein helix-turn-helix domain J155_00113 SM00480 DNA polymerase III beta subunit J155_00116 SM00387 Histidine kinase-like ATPases J155_00116 SM00433 TopoisomeraseII J155_00119 SM00028 Tetratricopeptide repeats J155_00126 SM00155 Phospholipase D. Active site motifs. J155_00129 SM00729 Elongator protein 3, MiaB family, Radical SAM J155_00135 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J155_00135 SM00245 tail specific protease J155_00143 SM00829 Enoylreductase J155_00168 SM00382 ATPases associated with a variety of cellular activities J155_00192 SM00487 DEAD-like helicases superfamily J155_00192 SM00490 helicase superfamily c-terminal domain J155_00196 SM00822 J155_00196 J155_00197 SM00822 J155_00197 J155_00246 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen J155_00250 SM00421 helix_turn_helix, Lux Regulon J155_00250 SM00448 cheY-homologous receiver domain J155_00254 SM00862 Transcriptional regulatory protein, C terminal J155_00270 SM00642 Alpha-amylase domain J155_00271 SM00642 Alpha-amylase domain J155_00272 SM00642 Alpha-amylase domain J155_00282 SM00354 helix_turn _helix lactose operon repressor J155_00290 SM00344 helix_turn_helix ASNC type J155_00294 SM00382 ATPases associated with a variety of cellular activities J155_00297 SM00382 ATPases associated with a variety of cellular activities J155_00303 SM00530 Helix-turn-helix XRE-family like proteins J155_00308 SM00855 Phosphoglycerate mutase family J155_00309 SM00867 YceI-like domain J155_00310 SM00155 Phospholipase D. Active site motifs. J155_00312 SM00563 Phosphate acyltransferases J155_00315 SM00028 Tetratricopeptide repeats J155_00317 SM00829 Enoylreductase J155_00320 SM01230 J155_00320 J155_00321 SM00938 Nitrogen regulatory protein P-II J155_00323 SM00387 Histidine kinase-like ATPases J155_00323 SM00388 His Kinase A (phosphoacceptor) domain J155_00324 SM00382 ATPases associated with a variety of cellular activities J155_00324 SM00448 cheY-homologous receiver domain J155_00336 SM00450 Rhodanese Homology Domain J155_00341 SM00387 Histidine kinase-like ATPases J155_00341 SM00388 His Kinase A (phosphoacceptor) domain J155_00342 SM00382 ATPases associated with a variety of cellular activities J155_00342 SM00448 cheY-homologous receiver domain J155_00364 SM00563 Phosphate acyltransferases J155_00370 SM00342 helix_turn_helix, arabinose operon control protein J155_00375 SM00100 Cyclic nucleotide-monophosphate binding domain J155_00375 SM00267 diguanylate cyclase J155_00380 SM00878 Biotin carboxylase C-terminal domain J155_00385 SM00953 J155_00385 J155_00393 SM00833 Cobalamin synthesis protein cobW C-terminal domain J155_00398 SM00347 helix_turn_helix multiple antibiotic resistance protein J155_00404 SM00829 Enoylreductase J155_00410 SM00487 DEAD-like helicases superfamily J155_00410 SM00490 helicase superfamily c-terminal domain J155_00410 SM00847 Helicase associated domain (HA2) Add an annotation J155_00435 SM00422 helix_turn_helix, mercury resistance J155_00442 SM00448 cheY-homologous receiver domain J155_00442 SM00862 Transcriptional regulatory protein, C terminal J155_00443 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_00443 SM00387 Histidine kinase-like ATPases J155_00443 SM00388 His Kinase A (phosphoacceptor) domain J155_00469 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J155_00470 SM00347 helix_turn_helix multiple antibiotic resistance protein J155_00474 SM00342 helix_turn_helix, arabinose operon control protein J155_00481 SM00420 helix_turn_helix, Deoxyribose operon repressor J155_00481 SM01134 J155_00481 J155_00484 SM00882 Coenzyme A transferase J155_00485 SM00882 Coenzyme A transferase J155_00489 SM00998 Adenylosuccinate lyase C-terminus J155_00493 SM00346 helix_turn_helix isocitrate lyase regulation J155_00494 SM00090 RIO-like kinase J155_00497 SM01228 J155_00497 J155_00508 SM00729 Elongator protein 3, MiaB family, Radical SAM J155_00508 SM00876 Biotin and Thiamin Synthesis associated domain J155_00513 SM00369 Leucine-rich repeats, typical (most populated) subfamily J155_00533 SM00382 ATPases associated with a variety of cellular activities J155_00545 SM00267 diguanylate cyclase J155_00547 SM00642 Alpha-amylase domain J155_00548 SM00642 Alpha-amylase domain J155_00550 SM00642 Alpha-amylase domain J155_00552 SM00642 Alpha-amylase domain J155_00561 SM00822 J155_00561 J155_00563 SM00487 DEAD-like helicases superfamily J155_00563 SM00490 helicase superfamily c-terminal domain J155_00566 SM00326 Src homology 3 domains J155_00567 SM00861 Transketolase, pyrimidine binding domain J155_00569 SM00237 Domains in Na-Ca exchangers and integrin-beta4 J155_00573 SM00347 helix_turn_helix multiple antibiotic resistance protein J155_00592 SM00271 DnaJ molecular chaperone homology domain J155_00596 SM00046 Diacylglycerol kinase catalytic domain (presumed) J155_00600 SM00903 Flavin reductase like domain J155_00604 SM00100 Cyclic nucleotide-monophosphate binding domain J155_00604 SM00419 helix_turn_helix, cAMP Regulatory protein J155_00614 SM00387 Histidine kinase-like ATPases J155_00614 SM00388 His Kinase A (phosphoacceptor) domain J155_00614 SM00448 cheY-homologous receiver domain J155_00615 SM00052 Putative diguanylate phosphodiesterase J155_00615 SM00267 diguanylate cyclase J155_00615 SM00448 cheY-homologous receiver domain J155_00626 SM00563 Phosphate acyltransferases J155_00630 SM01209 J155_00630 J155_00630 SM01210 J155_00630 J155_00632 SM00798 AICARFT/IMPCHase bienzyme J155_00632 SM00851 MGS-like domain J155_00635 SM00195 Dual specificity phosphatase, catalytic domain J155_00639 SM00563 Phosphate acyltransferases J155_00644 SM00530 Helix-turn-helix XRE-family like proteins J155_00649 SM00878 Biotin carboxylase C-terminal domain J155_00655 SM00342 helix_turn_helix, arabinose operon control protein J155_00657 SM00234 in StAR and phosphatidylcholine transfer protein J155_00661 SM00883 Chaperonin 10 Kd subunit J155_00672 SM00944 Pro-kumamolisin, activation domain J155_00675 SM00867 YceI-like domain J155_00686 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. J155_00688 SM00345 helix_turn_helix gluconate operon transcriptional repressor J155_00688 SM00895 J155_00688 J155_00692 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_00692 SM00331 Sigma factor PP2C-like phosphatases J155_00700 SM00342 helix_turn_helix, arabinose operon control protein J155_00712 SM00267 diguanylate cyclase J155_00717 SM00062 Bacterial periplasmic substrate-binding proteins J155_00726 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain J155_00726 SM01232 J155_00726 J155_00728 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J155_00731 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J155_00731 SM00091 PAS domain J155_00731 SM00267 diguanylate cyclase J155_00732 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_00732 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_00732 SM01049 J155_00732 J155_00733 SM00637 J155_00733 J155_00735 SM00267 diguanylate cyclase J155_00741 SM00448 cheY-homologous receiver domain J155_00741 SM00850 LytTr DNA-binding domain J155_00757 SM00382 ATPases associated with a variety of cellular activities J155_00757 SM01086 C-terminal, D2-small domain, of ClpB protein J155_00763 SM00267 diguanylate cyclase J155_00764 SM01263 J155_00764 J155_00767 SM00564 beta-propeller repeat J155_00768 SM00062 Bacterial periplasmic substrate-binding proteins J155_00768 SM00248 ankyrin repeats J155_00771 SM00829 Enoylreductase J155_00773 SM00382 ATPases associated with a variety of cellular activities J155_00775 SM00268 Actin J155_00780 SM00710 Parallel beta-helix repeats J155_00783 SM00936 Penicillin-binding protein 5, C-terminal domain J155_00787 SM00729 Elongator protein 3, MiaB family, Radical SAM J155_00788 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J155_00788 SM00245 tail specific protease J155_00799 SM01350 J155_00799 J155_00801 SM00749 bacterial OsmY and nodulation domain J155_00802 SM00387 Histidine kinase-like ATPases J155_00802 SM00388 His Kinase A (phosphoacceptor) domain J155_00803 SM00448 cheY-homologous receiver domain J155_00804 SM00387 Histidine kinase-like ATPases J155_00804 SM00388 His Kinase A (phosphoacceptor) domain J155_00804 SM00448 cheY-homologous receiver domain J155_00810 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. J155_00815 SM00382 ATPases associated with a variety of cellular activities J155_00831 SM00345 helix_turn_helix gluconate operon transcriptional repressor J155_00831 SM00866 J155_00831 J155_00833 SM00354 helix_turn _helix lactose operon repressor J155_00847 SM00849 Metallo-beta-lactamase superfamily J155_00848 SM00342 helix_turn_helix, arabinose operon control protein J155_00850 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_00850 SM00387 Histidine kinase-like ATPases J155_00850 SM00388 His Kinase A (phosphoacceptor) domain J155_00851 SM00448 cheY-homologous receiver domain J155_00851 SM00862 Transcriptional regulatory protein, C terminal J155_00855 SM00829 Enoylreductase J155_00858 SM00345 helix_turn_helix gluconate operon transcriptional repressor J155_00862 SM00382 ATPases associated with a variety of cellular activities J155_00875 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J155_00881 SM00387 Histidine kinase-like ATPases J155_00881 SM00388 His Kinase A (phosphoacceptor) domain J155_00882 SM00448 cheY-homologous receiver domain J155_00882 SM00862 Transcriptional regulatory protein, C terminal J155_00906 SM00842 Cell division protein FtsA J155_00907 SM00864 Tubulin/FtsZ family, GTPase domain J155_00907 SM00865 Tubulin/FtsZ family, C-terminal domain J155_00911 SM00957 SecA DEAD-like domain J155_00911 SM00958 SecA preprotein cross-linking domain J155_00917 SM00829 Enoylreductase J155_00918 SM00944 Pro-kumamolisin, activation domain J155_00921 SM00642 Alpha-amylase domain J155_00928 SM00996 S-adenosyl-L-homocysteine hydrolase J155_00928 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain J155_00953 SM00382 ATPases associated with a variety of cellular activities J155_00957 SM00382 ATPases associated with a variety of cellular activities J155_00959 SM00448 cheY-homologous receiver domain J155_00959 SM00862 Transcriptional regulatory protein, C terminal J155_00960 SM00387 Histidine kinase-like ATPases J155_00960 SM00388 His Kinase A (phosphoacceptor) domain J155_00970 SM00382 ATPases associated with a variety of cellular activities J155_00972 SM00382 ATPases associated with a variety of cellular activities J155_00985 SM00382 ATPases associated with a variety of cellular activities J155_00988 SM00650 Ribosomal RNA adenine dimethylases J155_00993 SM00108 Bulb-type mannose-specific lectin J155_01002 SM00345 helix_turn_helix gluconate operon transcriptional repressor J155_01002 SM00895 J155_01002 J155_01009 SM00347 helix_turn_helix multiple antibiotic resistance protein J155_01021 SM00448 cheY-homologous receiver domain J155_01022 SM00387 Histidine kinase-like ATPases J155_01022 SM00388 His Kinase A (phosphoacceptor) domain J155_01022 SM00448 cheY-homologous receiver domain J155_01023 SM00421 helix_turn_helix, Lux Regulon J155_01036 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs J155_01036 SM00475 5'-3' exonuclease J155_01042 SM01002 Alanine dehydrogenase/PNT, C-terminal domain J155_01042 SM01003 Alanine dehydrogenase/PNT, N-terminal domain J155_01066 SM00852 Probable molybdopterin binding domain J155_01067 SM00028 Tetratricopeptide repeats J155_01068 SM00937 J155_01068 J155_01070 SM00028 Tetratricopeptide repeats J155_01074 SM01400 J155_01074 J155_01084 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. J155_01084 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. J155_01085 SM00649 Ribosomal protein L11/L12 J155_01091 SM00663 RNA polymerase I subunit A N-terminus J155_01094 SM00838 Elongation factor G C-terminus J155_01094 SM00889 Elongation factor G, domain IV J155_01096 SM01403 J155_01096 J155_01100 SM01382 J155_01100 J155_01100 SM01383 J155_01100 J155_01103 SM00322 K homology RNA-binding domain J155_01107 SM01374 J155_01107 J155_01108 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. J155_01120 SM00363 S4 RNA-binding domain J155_01120 SM01390 J155_01120 J155_01121 SM00662 RNA polymerases D J155_01129 SM00838 Elongation factor G C-terminus J155_01135 SM00829 Enoylreductase J155_01144 SM00382 ATPases associated with a variety of cellular activities J155_01146 SM00829 Enoylreductase J155_01151 SM00855 Phosphoglycerate mutase family J155_01162 SM00014 Acid phosphatase homologues J155_01166 SM00091 PAS domain J155_01166 SM00387 Histidine kinase-like ATPases J155_01166 SM00388 His Kinase A (phosphoacceptor) domain J155_01167 SM00448 cheY-homologous receiver domain J155_01167 SM00862 Transcriptional regulatory protein, C terminal J155_01171 SM01329 J155_01171 J155_01205 SM00387 Histidine kinase-like ATPases J155_01206 SM00091 PAS domain J155_01210 SM00382 ATPases associated with a variety of cellular activities J155_01210 SM00994 ClpX C4-type zinc finger J155_01210 SM01086 C-terminal, D2-small domain, of ClpB protein J155_01211 SM00382 ATPases associated with a variety of cellular activities J155_01211 SM00464 Found in ATP-dependent protease La (LON) J155_01212 SM00411 bacterial (prokaryotic) histone like domain J155_01218 SM00257 Lysin motif J155_01219 SM00849 Metallo-beta-lactamase superfamily J155_01222 SM00479 J155_01222 J155_01223 SM00331 Sigma factor PP2C-like phosphatases J155_01223 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain J155_01228 SM00849 Metallo-beta-lactamase superfamily J155_01229 SM00729 Elongator protein 3, MiaB family, Radical SAM J155_01242 SM00382 ATPases associated with a variety of cellular activities J155_01244 SM00493 J155_01244 J155_01247 SM00460 Transglutaminase/protease-like homologues J155_01249 SM00382 ATPases associated with a variety of cellular activities J155_01258 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. J155_01259 SM00822 J155_01259 J155_01261 SM00825 Beta-ketoacyl synthase J155_01268 SM00382 ATPases associated with a variety of cellular activities J155_01277 SM01359 J155_01277 J155_01277 SM01360 J155_01277 J155_01284 SM00271 DnaJ molecular chaperone homology domain J155_01286 SM00448 cheY-homologous receiver domain J155_01288 SM00244 prohibitin homologues J155_01289 SM00244 prohibitin homologues J155_01290 SM01321 J155_01290 J155_01291 SM00788 Adenylosuccinate synthetase J155_01294 SM00822 J155_01294 J155_01304 SM00220 Serine/Threonine protein kinases, catalytic domain J155_01308 SM00855 Phosphoglycerate mutase family J155_01319 SM00052 Putative diguanylate phosphodiesterase J155_01320 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J155_01322 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J155_01323 SM01092 CO dehydrogenase flavoprotein C-terminal domain J155_01326 SM00974 J155_01326 J155_01330 SM00966 SpoVT / AbrB like domain J155_01334 SM00481 DNA polymerase alpha chain like domain J155_01336 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J155_01343 SM00091 PAS domain J155_01343 SM00342 helix_turn_helix, arabinose operon control protein J155_01348 SM01060 J155_01348 J155_01360 SM00448 cheY-homologous receiver domain J155_01360 SM00862 Transcriptional regulatory protein, C terminal J155_01361 SM00387 Histidine kinase-like ATPases J155_01361 SM00388 His Kinase A (phosphoacceptor) domain J155_01368 SM00421 helix_turn_helix, Lux Regulon J155_01368 SM00448 cheY-homologous receiver domain J155_01371 SM00478 endonuclease III J155_01375 SM00244 prohibitin homologues J155_01393 SM00904 Riboflavin kinase J155_01402 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J155_01403 SM00382 ATPases associated with a variety of cellular activities J155_01405 SM00862 Transcriptional regulatory protein, C terminal J155_01406 SM00342 helix_turn_helix, arabinose operon control protein J155_01413 SM00387 Histidine kinase-like ATPases J155_01413 SM00388 His Kinase A (phosphoacceptor) domain J155_01414 SM00387 Histidine kinase-like ATPases J155_01414 SM00388 His Kinase A (phosphoacceptor) domain J155_01414 SM00448 cheY-homologous receiver domain J155_01419 SM00387 Histidine kinase-like ATPases J155_01419 SM00388 His Kinase A (phosphoacceptor) domain J155_01419 SM00448 cheY-homologous receiver domain J155_01421 SM00138 Methyltransferase, chemotaxis proteins J155_01422 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J155_01422 SM00387 Histidine kinase-like ATPases J155_01422 SM00388 His Kinase A (phosphoacceptor) domain J155_01422 SM00448 cheY-homologous receiver domain J155_01423 SM00091 PAS domain J155_01423 SM00387 Histidine kinase-like ATPases J155_01423 SM00388 His Kinase A (phosphoacceptor) domain J155_01424 SM00448 cheY-homologous receiver domain J155_01426 SM00813 Alpha-L-arabinofuranosidase C-terminus J155_01429 SM00382 ATPases associated with a variety of cellular activities J155_01429 SM00962 SRP54-type protein, GTPase domain J155_01429 SM00963 SRP54-type protein, helical bundle domain J155_01443 SM00533 DNA-binding domain of DNA mismatch repair MUTS family J155_01443 SM00534 ATPase domain of DNA mismatch repair MUTS family J155_01448 SM00812 Alpha-L-fucosidase J155_01453 SM00530 Helix-turn-helix XRE-family like proteins J155_01463 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J155_01464 SM00838 Elongation factor G C-terminus J155_01467 SM00358 Double-stranded RNA binding motif J155_01467 SM00535 Ribonuclease III family J155_01470 SM00448 cheY-homologous receiver domain J155_01472 SM01118 J155_01472 J155_01479 SM00357 Cold shock protein domain J155_01482 SM00487 DEAD-like helicases superfamily J155_01482 SM00490 helicase superfamily c-terminal domain J155_01488 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J155_01488 SM00267 diguanylate cyclase J155_01492 SM00869 Autotransporter beta-domain J155_01493 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J155_01494 SM00671 Sel1-like repeats. J155_01494 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. J155_01533 SM00382 ATPases associated with a variety of cellular activities J155_01550 SM00481 DNA polymerase alpha chain like domain J155_01558 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J155_01564 SM00267 diguanylate cyclase J155_01569 SM00972 Spore Coat Protein U domain J155_01572 SM00972 Spore Coat Protein U domain J155_01574 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J155_01578 SM01172 J155_01578 J155_01579 SM00710 Parallel beta-helix repeats J155_01579 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses J155_01586 SM00434 DNA Topoisomerase IV J155_01587 SM00342 helix_turn_helix, arabinose operon control protein J155_01588 SM00347 helix_turn_helix multiple antibiotic resistance protein J155_01593 SM01217 J155_01593 J155_01594 SM00631 J155_01594 J155_01600 SM00347 helix_turn_helix multiple antibiotic resistance protein J155_01604 SM00382 ATPases associated with a variety of cellular activities J155_01607 SM00947 Carbonic anhydrase J155_01610 SM00357 Cold shock protein domain J155_01633 SM00267 diguanylate cyclase J155_01635 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J155_01635 SM00267 diguanylate cyclase J155_01671 SM00271 DnaJ molecular chaperone homology domain J155_01680 SM00382 ATPases associated with a variety of cellular activities J155_01685 SM00861 Transketolase, pyrimidine binding domain J155_01687 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. J155_01691 SM00116 Domain in cystathionine beta-synthase and other proteins. J155_01691 SM01091 Transporter associated domain J155_01697 SM00382 ATPases associated with a variety of cellular activities J155_01698 SM00345 helix_turn_helix gluconate operon transcriptional repressor J155_01702 SM00984 UDP binding domain J155_01706 SM00354 helix_turn _helix lactose operon repressor J155_01710 SM01018 B12 binding domain J155_01712 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor J155_01716 SM00316 Ribosomal protein S1-like RNA-binding domain J155_01716 SM00357 Cold shock protein domain J155_01716 SM00955 J155_01716 J155_01718 SM00967 RNA 2'-O ribose methyltransferase substrate binding J155_01719 SM00267 diguanylate cyclase J155_01720 SM00479 J155_01720 J155_01723 SM00382 ATPases associated with a variety of cellular activities J155_01730 SM00947 Carbonic anhydrase J155_01732 SM00478 endonuclease III J155_01737 SM00450 Rhodanese Homology Domain J155_01739 SM00644 J155_01739 J155_01743 SM00382 ATPases associated with a variety of cellular activities J155_01744 SM00981 J155_01744 J155_01749 SM00479 J155_01749 J155_01754 SM00947 Carbonic anhydrase J155_01763 SM00421 helix_turn_helix, Lux Regulon J155_01763 SM00448 cheY-homologous receiver domain J155_01775 SM00968 SMC proteins Flexible Hinge Domain J155_01776 SM00771 ZipA, C-terminal domain (FtsZ-binding) J155_01779 SM00292 breast cancer carboxy-terminal domain J155_01779 SM00532 Ligase N family J155_01783 SM00434 DNA Topoisomerase IV J155_01784 SM00564 beta-propeller repeat J155_01791 SM00345 helix_turn_helix gluconate operon transcriptional repressor J155_01791 SM00866 J155_01791 J155_01796 SM00240 Forkhead associated domain J155_01800 SM00830 Chorismate mutase type II J155_01809 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_01809 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_01811 SM00347 helix_turn_helix multiple antibiotic resistance protein J155_01812 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J155_01812 SM00091 PAS domain J155_01812 SM00387 Histidine kinase-like ATPases J155_01812 SM00388 His Kinase A (phosphoacceptor) domain J155_01812 SM00448 cheY-homologous receiver domain J155_01813 SM00448 cheY-homologous receiver domain J155_01814 SM00382 ATPases associated with a variety of cellular activities J155_01815 SM00091 PAS domain J155_01815 SM00387 Histidine kinase-like ATPases J155_01815 SM00388 His Kinase A (phosphoacceptor) domain J155_01815 SM00448 cheY-homologous receiver domain J155_01846 SM00729 Elongator protein 3, MiaB family, Radical SAM J155_01848 SM00382 ATPases associated with a variety of cellular activities J155_01853 SM00116 Domain in cystathionine beta-synthase and other proteins. J155_01853 SM01091 Transporter associated domain J155_01858 SM00387 Histidine kinase-like ATPases J155_01858 SM00433 TopoisomeraseII J155_01863 SM01192 J155_01863 J155_01863 SM01193 J155_01863 J155_01868 SM00463 Small MutS-related domain J155_01872 SM00257 Lysin motif J155_01875 SM01103 J155_01875 J155_01877 SM00382 ATPases associated with a variety of cellular activities J155_01885 SM00382 ATPases associated with a variety of cellular activities J155_01887 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain J155_01890 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J155_01890 SM00091 PAS domain J155_01890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_01900 SM00670 Large family of predicted nucleotide-binding domains J155_01904 SM01130 J155_01904 J155_01909 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J155_01918 SM00758 J155_01918 J155_01925 SM00646 J155_01925 J155_01941 SM00052 Putative diguanylate phosphodiesterase J155_01941 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J155_01941 SM00267 diguanylate cyclase J155_01943 SM00448 cheY-homologous receiver domain J155_01944 SM00387 Histidine kinase-like ATPases J155_01946 SM00014 Acid phosphatase homologues J155_01961 SM00912 haemagglutination activity domain J155_01971 SM00100 Cyclic nucleotide-monophosphate binding domain J155_01971 SM00419 helix_turn_helix, cAMP Regulatory protein J155_01986 SM01007 Class II Aldolase and Adducin N-terminal domain J155_01995 SM00841 Elongation factor P, C-terminal J155_01995 SM01185 J155_01995 J155_01996 SM00822 J155_01996 J155_02000 SM00899 J155_02000 J155_02007 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain J155_02009 SM00851 MGS-like domain J155_02009 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J155_02020 SM00850 LytTr DNA-binding domain J155_02021 SM00937 J155_02021 J155_02023 SM00448 cheY-homologous receiver domain J155_02023 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J155_02024 SM00073 Histidine Phosphotransfer domain J155_02024 SM00387 Histidine kinase-like ATPases J155_02024 SM00388 His Kinase A (phosphoacceptor) domain J155_02024 SM00448 cheY-homologous receiver domain J155_02029 SM00966 SpoVT / AbrB like domain J155_02033 SM00052 Putative diguanylate phosphodiesterase J155_02033 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J155_02033 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J155_02033 SM00091 PAS domain J155_02033 SM00267 diguanylate cyclase J155_02034 SM00448 cheY-homologous receiver domain J155_02036 SM00138 Methyltransferase, chemotaxis proteins J155_02037 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_02037 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_02038 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_02038 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_02039 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_02039 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_02040 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_02040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_02041 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_02041 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_02042 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_02042 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_02043 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_02045 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_02045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_02046 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_02046 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_02046 SM01049 J155_02046 J155_02048 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_02048 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_02049 SM00073 Histidine Phosphotransfer domain J155_02049 SM00260 Two component signalling adaptor domain J155_02049 SM00387 Histidine kinase-like ATPases J155_02049 SM01231 J155_02049 J155_02050 SM00448 cheY-homologous receiver domain J155_02052 SM00260 Two component signalling adaptor domain J155_02058 SM00220 Serine/Threonine protein kinases, catalytic domain J155_02072 SM00530 Helix-turn-helix XRE-family like proteins J155_02077 SM00073 Histidine Phosphotransfer domain J155_02077 SM00260 Two component signalling adaptor domain J155_02077 SM00387 Histidine kinase-like ATPases J155_02077 SM01231 J155_02077 J155_02079 SM00448 cheY-homologous receiver domain J155_02082 SM00382 ATPases associated with a variety of cellular activities J155_02082 SM00962 SRP54-type protein, GTPase domain J155_02085 SM00052 Putative diguanylate phosphodiesterase J155_02085 SM00267 diguanylate cyclase J155_02086 SM00267 diguanylate cyclase J155_02087 SM00267 diguanylate cyclase J155_02098 SM00382 ATPases associated with a variety of cellular activities J155_02109 SM00822 J155_02109 J155_02114 SM00382 ATPases associated with a variety of cellular activities J155_02115 SM00448 cheY-homologous receiver domain J155_02117 SM00421 helix_turn_helix, Lux Regulon J155_02117 SM00448 cheY-homologous receiver domain J155_02125 SM00047 Lysozyme subfamily 2 J155_02134 SM00260 Two component signalling adaptor domain J155_02134 SM00448 cheY-homologous receiver domain J155_02135 SM00858 J155_02135 J155_02138 SM00387 Histidine kinase-like ATPases J155_02139 SM00052 Putative diguanylate phosphodiesterase J155_02139 SM00267 diguanylate cyclase J155_02139 SM00448 cheY-homologous receiver domain J155_02140 SM00091 PAS domain J155_02140 SM00387 Histidine kinase-like ATPases J155_02141 SM00052 Putative diguanylate phosphodiesterase J155_02141 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J155_02141 SM00091 PAS domain J155_02141 SM00267 diguanylate cyclase J155_02143 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_02148 SM00382 ATPases associated with a variety of cellular activities J155_02148 SM01086 C-terminal, D2-small domain, of ClpB protein J155_02149 SM00316 Ribosomal protein S1-like RNA-binding domain J155_02153 SM00382 ATPases associated with a variety of cellular activities J155_02153 SM00843 J155_02153 J155_02157 SM00382 ATPases associated with a variety of cellular activities J155_02164 SM00562 J155_02164 J155_02166 SM00028 Tetratricopeptide repeats J155_02169 SM00564 beta-propeller repeat J155_02170 SM00382 ATPases associated with a variety of cellular activities J155_02171 SM00852 Probable molybdopterin binding domain J155_02172 SM00450 Rhodanese Homology Domain J155_02181 SM00852 Probable molybdopterin binding domain J155_02186 SM00529 Helix-turn-helix diphteria tox regulatory element J155_02188 SM00479 J155_02188 J155_02202 SM00316 Ribosomal protein S1-like RNA-binding domain J155_02202 SM00732 Likely ribonuclease with RNase H fold. J155_02203 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J155_02203 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J155_02203 SM00091 PAS domain J155_02203 SM00387 Histidine kinase-like ATPases J155_02203 SM00388 His Kinase A (phosphoacceptor) domain J155_02203 SM00448 cheY-homologous receiver domain J155_02204 SM00448 cheY-homologous receiver domain J155_02221 SM00382 ATPases associated with a variety of cellular activities J155_02232 SM00382 ATPases associated with a variety of cellular activities J155_02234 SM00849 Metallo-beta-lactamase superfamily J155_02237 SM00382 ATPases associated with a variety of cellular activities J155_02240 SM00226 Low molecular weight phosphatase family J155_02242 SM00278 Helix-hairpin-helix DNA-binding motif class 1 J155_02242 SM00465 GIY-YIG type nucleases (URI domain) J155_02248 SM00823 Phosphopantetheine attachment site J155_02255 SM00984 UDP binding domain J155_02259 SM00450 Rhodanese Homology Domain J155_02260 SM00421 helix_turn_helix, Lux Regulon J155_02260 SM00448 cheY-homologous receiver domain J155_02261 SM00316 Ribosomal protein S1-like RNA-binding domain J155_02262 SM00363 S4 RNA-binding domain J155_02270 SM01034 Sensors of blue-light using FAD J155_02291 SM00448 cheY-homologous receiver domain J155_02291 SM00850 LytTr DNA-binding domain J155_02294 SM00869 Autotransporter beta-domain J155_02298 SM00387 Histidine kinase-like ATPases J155_02298 SM00388 His Kinase A (phosphoacceptor) domain J155_02299 SM00421 helix_turn_helix, Lux Regulon J155_02299 SM00448 cheY-homologous receiver domain J155_02300 SM00869 Autotransporter beta-domain J155_02301 SM00052 Putative diguanylate phosphodiesterase J155_02306 SM01012 J155_02306 J155_02315 SM00342 helix_turn_helix, arabinose operon control protein J155_02316 SM00387 Histidine kinase-like ATPases J155_02317 SM00421 helix_turn_helix, Lux Regulon J155_02317 SM00448 cheY-homologous receiver domain J155_02318 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_02325 SM00530 Helix-turn-helix XRE-family like proteins J155_02339 SM00966 SpoVT / AbrB like domain J155_02344 SM00965 Secretin and TonB N terminus short domain J155_02349 SM00736 Dystroglycan-type cadherin-like domains. J155_02355 SM00382 ATPases associated with a variety of cellular activities J155_02366 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain J155_02366 SM00437 Bacterial DNA topoisomerase I DNA-binding domain J155_02391 SM00342 helix_turn_helix, arabinose operon control protein J155_02400 SM00487 DEAD-like helicases superfamily J155_02451 SM00116 Domain in cystathionine beta-synthase and other proteins. J155_02451 SM01240 J155_02451 J155_02456 SM00822 J155_02456 J155_02458 SM00028 Tetratricopeptide repeats J155_02460 SM00411 bacterial (prokaryotic) histone like domain J155_02461 SM00316 Ribosomal protein S1-like RNA-binding domain J155_02477 SM00354 helix_turn _helix lactose operon repressor J155_02482 SM00363 S4 RNA-binding domain J155_02487 SM00382 ATPases associated with a variety of cellular activities J155_02497 SM00357 Cold shock protein domain J155_02498 SM00382 ATPases associated with a variety of cellular activities J155_02499 SM00382 ATPases associated with a variety of cellular activities J155_02505 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J155_02507 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase J155_02510 SM00859 Semialdehyde dehydrogenase, NAD binding domain J155_02518 SM00840 J155_02518 J155_02522 SM01234 J155_02522 J155_02530 SM00849 Metallo-beta-lactamase superfamily J155_02535 SM00656 J155_02535 J155_02543 SM00841 Elongation factor P, C-terminal J155_02543 SM01185 J155_02543 J155_02545 SM00052 Putative diguanylate phosphodiesterase J155_02545 SM00267 diguanylate cyclase J155_02545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_02552 SM00382 ATPases associated with a variety of cellular activities J155_02553 SM00487 DEAD-like helicases superfamily J155_02553 SM00490 helicase superfamily c-terminal domain J155_02558 SM00357 Cold shock protein domain J155_02559 SM01322 J155_02559 J155_02561 SM00052 Putative diguanylate phosphodiesterase J155_02561 SM00267 diguanylate cyclase J155_02564 SM00822 J155_02564 J155_02568 SM00853 MutL C terminal dimerisation domain J155_02568 SM01340 J155_02568 J155_02569 SM00646 J155_02569 J155_02576 SM00474 3'-5' exonuclease J155_02580 SM00528 Domain in histone-like proteins of HNS family J155_02598 SM00857 Resolvase, N terminal domain J155_02613 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J155_02613 SM00267 diguanylate cyclase J155_02614 SM00260 Two component signalling adaptor domain J155_02615 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_02615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_02617 SM00487 DEAD-like helicases superfamily J155_02617 SM00490 helicase superfamily c-terminal domain J155_02628 SM00729 Elongator protein 3, MiaB family, Radical SAM J155_02633 SM00116 Domain in cystathionine beta-synthase and other proteins. J155_02633 SM01091 Transporter associated domain J155_02639 SM00382 ATPases associated with a variety of cellular activities J155_02645 SM01230 J155_02645 J155_02647 SM01230 J155_02647 J155_02649 SM00267 diguanylate cyclase J155_02649 SM00448 cheY-homologous receiver domain J155_02659 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J155_02659 SM00091 PAS domain J155_02659 SM00387 Histidine kinase-like ATPases J155_02659 SM00388 His Kinase A (phosphoacceptor) domain J155_02659 SM00448 cheY-homologous receiver domain J155_02659 SM01079 J155_02659 J155_02660 SM00448 cheY-homologous receiver domain J155_02660 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J155_02666 SM00354 helix_turn _helix lactose operon repressor J155_02679 SM01323 J155_02679 J155_02682 SM00344 helix_turn_helix ASNC type J155_02697 SM00387 Histidine kinase-like ATPases J155_02707 SM00944 Pro-kumamolisin, activation domain J155_02718 SM01130 J155_02718 J155_02723 SM00342 helix_turn_helix, arabinose operon control protein J155_02724 SM00382 ATPases associated with a variety of cellular activities J155_02724 SM00962 SRP54-type protein, GTPase domain J155_02724 SM00963 SRP54-type protein, helical bundle domain J155_02725 SM00478 endonuclease III J155_02727 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J155_02727 SM00091 PAS domain J155_02727 SM00387 Histidine kinase-like ATPases J155_02727 SM00388 His Kinase A (phosphoacceptor) domain J155_02727 SM00448 cheY-homologous receiver domain J155_02730 SM00465 GIY-YIG type nucleases (URI domain) J155_02736 SM00507 HNH nucleases J155_02737 SM00861 Transketolase, pyrimidine binding domain J155_02742 SM00849 Metallo-beta-lactamase superfamily J155_02759 SM00422 helix_turn_helix, mercury resistance J155_02760 SM00411 bacterial (prokaryotic) histone like domain J155_02761 SM00873 B3/4 domain J155_02761 SM00874 tRNA synthetase B5 domain J155_02761 SM00896 Ferredoxin-fold anticodon binding domain J155_02767 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain J155_02768 SM00354 helix_turn _helix lactose operon repressor J155_02769 SM00642 Alpha-amylase domain J155_02776 SM00642 Alpha-amylase domain J155_02787 SM00382 ATPases associated with a variety of cellular activities J155_02799 SM00487 DEAD-like helicases superfamily J155_02799 SM00490 helicase superfamily c-terminal domain J155_02848 SM01001 AIR carboxylase J155_02852 SM00316 Ribosomal protein S1-like RNA-binding domain J155_02852 SM00322 K homology RNA-binding domain J155_02853 SM01387 J155_02853 J155_02857 SM00316 Ribosomal protein S1-like RNA-binding domain J155_02857 SM00322 K homology RNA-binding domain J155_02867 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J155_02868 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J155_02877 SM00822 J155_02877 J155_02880 SM00052 Putative diguanylate phosphodiesterase J155_02880 SM00267 diguanylate cyclase J155_02880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_02894 SM00859 Semialdehyde dehydrogenase, NAD binding domain J155_02900 SM00257 Lysin motif J155_02906 SM00729 Elongator protein 3, MiaB family, Radical SAM J155_02919 SM01160 J155_02919 J155_02930 SM00098 Alkaline phosphatase homologues J155_02931 SM00977 TilS substrate C-terminal domain J155_02934 SM01351 J155_02934 J155_02941 SM00316 Ribosomal protein S1-like RNA-binding domain J155_02967 SM00382 ATPases associated with a variety of cellular activities J155_02974 SM00448 cheY-homologous receiver domain J155_02974 SM00862 Transcriptional regulatory protein, C terminal J155_02975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_02975 SM00387 Histidine kinase-like ATPases J155_02975 SM00388 His Kinase A (phosphoacceptor) domain J155_02981 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J155_02981 SM00267 diguanylate cyclase J155_02982 SM00363 S4 RNA-binding domain J155_02983 SM00052 Putative diguanylate phosphodiesterase J155_02983 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J155_02983 SM00091 PAS domain J155_02983 SM00267 diguanylate cyclase J155_02984 SM00487 DEAD-like helicases superfamily J155_02984 SM00490 helicase superfamily c-terminal domain J155_02993 SM00342 helix_turn_helix, arabinose operon control protein J155_02993 SM00478 endonuclease III J155_02993 SM01009 AlkA N-terminal domain J155_02997 SM00829 Enoylreductase J155_03011 SM00342 helix_turn_helix, arabinose operon control protein J155_03025 SM00645 Papain family cysteine protease J155_03026 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_03026 SM00387 Histidine kinase-like ATPases J155_03026 SM00388 His Kinase A (phosphoacceptor) domain J155_03027 SM00448 cheY-homologous receiver domain J155_03027 SM00862 Transcriptional regulatory protein, C terminal J155_03030 SM00487 DEAD-like helicases superfamily J155_03030 SM00490 helicase superfamily c-terminal domain J155_03030 SM00982 J155_03030 J155_03030 SM01058 CarD-like/TRCF domain J155_03037 SM00073 Histidine Phosphotransfer domain J155_03037 SM00260 Two component signalling adaptor domain J155_03037 SM00387 Histidine kinase-like ATPases J155_03037 SM01231 J155_03037 J155_03038 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_03038 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_03039 SM00260 Two component signalling adaptor domain J155_03040 SM00052 Putative diguanylate phosphodiesterase J155_03040 SM00448 cheY-homologous receiver domain J155_03041 SM00138 Methyltransferase, chemotaxis proteins J155_03042 SM00448 cheY-homologous receiver domain J155_03043 SM00155 Phospholipase D. Active site motifs. J155_03046 SM00855 Phosphoglycerate mutase family J155_03056 SM00248 ankyrin repeats J155_03066 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J155_03067 SM01092 CO dehydrogenase flavoprotein C-terminal domain J155_03069 SM00829 Enoylreductase J155_03070 SM00267 diguanylate cyclase J155_03083 SM00732 Likely ribonuclease with RNase H fold. J155_03090 SM00382 ATPases associated with a variety of cellular activities J155_03093 SM00411 bacterial (prokaryotic) histone like domain J155_03099 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain J155_03102 SM00382 ATPases associated with a variety of cellular activities J155_03108 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. J155_03109 SM00671 Sel1-like repeats. J155_03115 SM00054 EF-hand, calcium binding motif J155_03133 SM00116 Domain in cystathionine beta-synthase and other proteins. J155_03137 SM00382 ATPases associated with a variety of cellular activities J155_03146 SM00924 MgtE intracellular N domain J155_03152 SM00656 J155_03152 J155_03154 SM00421 helix_turn_helix, Lux Regulon J155_03160 SM00849 Metallo-beta-lactamase superfamily J155_03162 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. J155_03166 SM00422 helix_turn_helix, mercury resistance J155_03193 SM00342 helix_turn_helix, arabinose operon control protein J155_03195 SM00387 Histidine kinase-like ATPases J155_03195 SM00388 His Kinase A (phosphoacceptor) domain J155_03195 SM00448 cheY-homologous receiver domain J155_03196 SM00387 Histidine kinase-like ATPases J155_03196 SM00388 His Kinase A (phosphoacceptor) domain J155_03196 SM00448 cheY-homologous receiver domain J155_03198 SM00387 Histidine kinase-like ATPases J155_03198 SM00388 His Kinase A (phosphoacceptor) domain J155_03198 SM00448 cheY-homologous receiver domain J155_03199 SM00867 YceI-like domain J155_03201 SM00867 YceI-like domain J155_03213 SM00116 Domain in cystathionine beta-synthase and other proteins. J155_03219 SM00028 Tetratricopeptide repeats J155_03239 SM00812 Alpha-L-fucosidase J155_03240 SM00636 J155_03240 J155_03243 SM00758 J155_03243 J155_03243 SM01217 J155_03243 J155_03249 SM01149 J155_03249 J155_03256 SM00369 Leucine-rich repeats, typical (most populated) subfamily J155_03260 SM00260 Two component signalling adaptor domain J155_03262 SM00073 Histidine Phosphotransfer domain J155_03262 SM00260 Two component signalling adaptor domain J155_03262 SM00387 Histidine kinase-like ATPases J155_03262 SM00448 cheY-homologous receiver domain J155_03262 SM01231 J155_03262 J155_03263 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_03264 SM00260 Two component signalling adaptor domain J155_03265 SM00448 cheY-homologous receiver domain J155_03266 SM00448 cheY-homologous receiver domain J155_03271 SM00491 J155_03271 J155_03276 SM00954 Region found in RelA / SpoT proteins J155_03285 SM00382 ATPases associated with a variety of cellular activities J155_03285 SM00487 DEAD-like helicases superfamily J155_03285 SM00490 helicase superfamily c-terminal domain J155_03285 SM00847 Helicase associated domain (HA2) Add an annotation J155_03287 SM00341 Helicase and RNase D C-terminal J155_03287 SM00487 DEAD-like helicases superfamily J155_03287 SM00490 helicase superfamily c-terminal domain J155_03287 SM00956 J155_03287 J155_03289 SM00448 cheY-homologous receiver domain J155_03294 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_03294 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_03297 SM00448 cheY-homologous receiver domain J155_03298 SM00091 PAS domain J155_03298 SM00911 HWE histidine kinase J155_03309 SM00382 ATPases associated with a variety of cellular activities J155_03312 SM00278 Helix-hairpin-helix DNA-binding motif class 1 J155_03319 SM00834 Putative regulatory protein J155_03328 SM00382 ATPases associated with a variety of cellular activities J155_03348 SM00855 Phosphoglycerate mutase family J155_03360 SM00382 ATPases associated with a variety of cellular activities J155_03360 SM01086 C-terminal, D2-small domain, of ClpB protein J155_03361 SM00382 ATPases associated with a variety of cellular activities J155_03363 SM00062 Bacterial periplasmic substrate-binding proteins J155_03378 SM00564 beta-propeller repeat J155_03379 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_03400 SM01126 J155_03400 J155_03402 SM00881 CoA binding domain J155_03404 SM00387 Histidine kinase-like ATPases J155_03404 SM00388 His Kinase A (phosphoacceptor) domain J155_03405 SM00382 ATPases associated with a variety of cellular activities J155_03405 SM00448 cheY-homologous receiver domain J155_03419 SM00387 Histidine kinase-like ATPases J155_03419 SM00388 His Kinase A (phosphoacceptor) domain J155_03420 SM00448 cheY-homologous receiver domain J155_03420 SM00862 Transcriptional regulatory protein, C terminal J155_03423 SM00642 Alpha-amylase domain J155_03424 SM00528 Domain in histone-like proteins of HNS family J155_03426 SM00318 Staphylococcal nuclease homologues J155_03441 SM00387 Histidine kinase-like ATPases J155_03441 SM00388 His Kinase A (phosphoacceptor) domain J155_03442 SM00448 cheY-homologous receiver domain J155_03444 SM00646 J155_03444 J155_03453 SM00530 Helix-turn-helix XRE-family like proteins J155_03457 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J155_03457 SM00387 Histidine kinase-like ATPases J155_03461 SM00255 Toll - interleukin 1 - resistance J155_03464 SM00869 Autotransporter beta-domain J155_03474 SM00354 helix_turn _helix lactose operon repressor J155_03480 SM00967 RNA 2'-O ribose methyltransferase substrate binding J155_03501 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J155_03501 SM00387 Histidine kinase-like ATPases J155_03507 SM00506 Appr-1"-p processing enzyme J155_03516 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J155_03521 SM00849 Metallo-beta-lactamase superfamily J155_03524 SM00382 ATPases associated with a variety of cellular activities J155_03536 SM00861 Transketolase, pyrimidine binding domain J155_03539 SM00028 Tetratricopeptide repeats J155_03539 SM00327 von Willebrand factor (vWF) type A domain J155_03540 SM00327 von Willebrand factor (vWF) type A domain J155_03543 SM00382 ATPases associated with a variety of cellular activities J155_03545 SM00965 Secretin and TonB N terminus short domain J155_03556 SM00487 DEAD-like helicases superfamily J155_03556 SM00490 helicase superfamily c-terminal domain J155_03558 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J155_03558 SM00954 Region found in RelA / SpoT proteins J155_03559 SM01409 J155_03559 J155_03560 SM00072 Guanylate kinase homologues. J155_03565 SM00729 Elongator protein 3, MiaB family, Radical SAM J155_03570 SM01011 Aminopeptidase P, N-terminal domain J155_03585 SM00028 Tetratricopeptide repeats J155_03585 SM00382 ATPases associated with a variety of cellular activities J155_03585 SM00421 helix_turn_helix, Lux Regulon J155_03599 SM00464 Found in ATP-dependent protease La (LON) J155_03609 SM00342 helix_turn_helix, arabinose operon control protein J155_03610 SM00862 Transcriptional regulatory protein, C terminal J155_03614 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_03620 SM00917 LeuA allosteric (dimerisation) domain J155_03621 SM01329 J155_03621 J155_03625 SM00267 diguanylate cyclase J155_03635 SM00919 Malic enzyme, NAD binding domain J155_03635 SM01274 J155_03635 J155_03638 SM00387 Histidine kinase-like ATPases J155_03638 SM00388 His Kinase A (phosphoacceptor) domain J155_03638 SM00448 cheY-homologous receiver domain J155_03646 SM00421 helix_turn_helix, Lux Regulon J155_03646 SM00448 cheY-homologous receiver domain J155_03648 SM00387 Histidine kinase-like ATPases J155_03648 SM00388 His Kinase A (phosphoacceptor) domain J155_03649 SM00448 cheY-homologous receiver domain J155_03649 SM00862 Transcriptional regulatory protein, C terminal J155_03653 SM00822 J155_03653 J155_03654 SM00354 helix_turn _helix lactose operon repressor J155_03657 SM00642 Alpha-amylase domain J155_03659 SM01154 J155_03659 J155_03666 SM00450 Rhodanese Homology Domain J155_03679 SM00028 Tetratricopeptide repeats J155_03694 SM00345 helix_turn_helix gluconate operon transcriptional repressor J155_03694 SM00866 J155_03694 J155_03706 SM00382 ATPases associated with a variety of cellular activities J155_03711 SM01211 J155_03711 J155_03724 SM00656 J155_03724 J155_03730 SM00528 Domain in histone-like proteins of HNS family J155_03733 SM00382 ATPases associated with a variety of cellular activities J155_03739 SM00882 Coenzyme A transferase J155_03740 SM00882 Coenzyme A transferase J155_03743 SM00984 UDP binding domain J155_03748 SM00893 Electron transfer flavoprotein domain J155_03749 SM00893 Electron transfer flavoprotein domain J155_03763 SM00382 ATPases associated with a variety of cellular activities J155_03766 SM00116 Domain in cystathionine beta-synthase and other proteins. J155_03773 SM00487 DEAD-like helicases superfamily J155_03773 SM00490 helicase superfamily c-terminal domain J155_03780 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J155_03787 SM00825 Beta-ketoacyl synthase J155_03802 SM00382 ATPases associated with a variety of cellular activities J155_03806 SM00382 ATPases associated with a variety of cellular activities J155_03806 SM00387 Histidine kinase-like ATPases J155_03806 SM00448 cheY-homologous receiver domain J155_03809 SM00830 Chorismate mutase type II J155_03811 SM00382 ATPases associated with a variety of cellular activities J155_03825 SM00986 Uracil DNA glycosylase superfamily J155_03825 SM00987 UreE urease accessory protein, C-terminal domain J155_03831 SM00382 ATPases associated with a variety of cellular activities J155_03831 SM00930 J155_03831 J155_03835 SM00387 Histidine kinase-like ATPases J155_03835 SM00388 His Kinase A (phosphoacceptor) domain J155_03835 SM00448 cheY-homologous receiver domain J155_03845 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J155_03845 SM00091 PAS domain J155_03845 SM00387 Histidine kinase-like ATPases J155_03845 SM00388 His Kinase A (phosphoacceptor) domain J155_03845 SM00448 cheY-homologous receiver domain J155_03849 SM01005 Alanine racemase, C-terminal domain J155_03851 SM00344 helix_turn_helix ASNC type J155_03862 SM00382 ATPases associated with a variety of cellular activities J155_03864 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. J155_03865 SM00986 Uracil DNA glycosylase superfamily J155_03865 SM00987 UreE urease accessory protein, C-terminal domain J155_03866 SM00729 Elongator protein 3, MiaB family, Radical SAM J155_03879 SM00448 cheY-homologous receiver domain J155_03879 SM00850 LytTr DNA-binding domain J155_03880 SM00387 Histidine kinase-like ATPases J155_03887 SM00091 PAS domain J155_03887 SM00138 Methyltransferase, chemotaxis proteins J155_03887 SM00911 HWE histidine kinase J155_03888 SM00448 cheY-homologous receiver domain J155_03890 SM00382 ATPases associated with a variety of cellular activities J155_03890 SM00448 cheY-homologous receiver domain J155_03901 SM00382 ATPases associated with a variety of cellular activities J155_03916 SM00382 ATPases associated with a variety of cellular activities J155_03917 SM00631 J155_03917 J155_03925 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J155_03925 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_03926 SM00477 DNA/RNA non-specific endonuclease J155_03926 SM00892 DNA/RNA non-specific endonuclease J155_03957 SM00257 Lysin motif J155_03962 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain J155_03962 SM00437 Bacterial DNA topoisomerase I DNA-binding domain J155_03962 SM00493 J155_03962 J155_03973 SM00487 DEAD-like helicases superfamily J155_03973 SM00490 helicase superfamily c-terminal domain J155_03980 SM00986 Uracil DNA glycosylase superfamily J155_03980 SM00987 UreE urease accessory protein, C-terminal domain J155_03981 SM00448 cheY-homologous receiver domain J155_03983 SM00382 ATPases associated with a variety of cellular activities J155_03984 SM00487 DEAD-like helicases superfamily J155_03984 SM00490 helicase superfamily c-terminal domain J155_03986 SM00357 Cold shock protein domain J155_03986 SM00382 ATPases associated with a variety of cellular activities J155_03986 SM00959 Rho termination factor, N-terminal domain J155_03992 SM00487 DEAD-like helicases superfamily J155_04001 SM00257 Lysin motif J155_04007 SM01150 J155_04007 J155_04016 SM00644 J155_04016 J155_04018 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J155_04025 SM01217 J155_04025 J155_04026 SM00905 Dihydroneopterin aldolase J155_04031 SM00400 zinc finger J155_04031 SM00493 J155_04031 J155_04031 SM00766 DNA primase DnaG DnaB-binding J155_04053 SM00363 S4 RNA-binding domain J155_04062 SM00470 ParB-like nuclease domain J155_04066 SM01259 J155_04066 J155_04072 SM00836 DALR anticodon binding domain J155_04072 SM01016 Arginyl tRNA synthetase N terminal dom J155_04078 SM00823 Phosphopantetheine attachment site J155_04078 SM00824 Thioesterase J155_04085 SM00938 Nitrogen regulatory protein P-II J155_04087 SM00382 ATPases associated with a variety of cellular activities J155_04090 SM00052 Putative diguanylate phosphodiesterase J155_04098 SM00244 prohibitin homologues J155_04108 SM00448 cheY-homologous receiver domain J155_04108 SM00862 Transcriptional regulatory protein, C terminal J155_04109 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J155_04109 SM00387 Histidine kinase-like ATPases J155_04109 SM00388 His Kinase A (phosphoacceptor) domain J155_04113 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J155_04122 SM01060 J155_04122 J155_04125 SM00421 helix_turn_helix, Lux Regulon J155_04125 SM00448 cheY-homologous receiver domain J155_04128 SM00382 ATPases associated with a variety of cellular activities J155_04137 SM00849 Metallo-beta-lactamase superfamily J155_04143 SM00960 Roadblock/LC7 domain J155_04156 SM00387 Histidine kinase-like ATPases J155_04156 SM00388 His Kinase A (phosphoacceptor) domain J155_04157 SM00448 cheY-homologous receiver domain J155_04157 SM00862 Transcriptional regulatory protein, C terminal J155_04161 SM00248 ankyrin repeats J155_04162 SM01060 J155_04162 J155_04163 SM00491 J155_04163 J155_04169 SM00477 DNA/RNA non-specific endonuclease J155_04169 SM00892 DNA/RNA non-specific endonuclease J155_04172 SM01004 Delta-aminolevulinic acid dehydratase J155_04180 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. J155_04184 SM00382 ATPases associated with a variety of cellular activities J155_04186 SM00530 Helix-turn-helix XRE-family like proteins J155_04194 SM00342 helix_turn_helix, arabinose operon control protein J155_04196 SM00382 ATPases associated with a variety of cellular activities J155_04208 SM00881 CoA binding domain J155_04209 SM00116 Domain in cystathionine beta-synthase and other proteins. J155_04209 SM00924 MgtE intracellular N domain J155_04210 SM01057 Eukaryotic-type carbonic anhydrase J155_04215 SM00248 ankyrin repeats J155_04217 SM00825 Beta-ketoacyl synthase J155_04222 SM00822 J155_04222 J155_04231 SM00563 Phosphate acyltransferases J155_04242 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs J155_04242 SM00474 3'-5' exonuclease J155_04242 SM00475 5'-3' exonuclease J155_04242 SM00482 DNA polymerase A domain J155_04245 SM00912 haemagglutination activity domain J155_04249 SM00331 Sigma factor PP2C-like phosphatases J155_04249 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain J155_04254 SM00240 Forkhead associated domain J155_04257 SM00028 Tetratricopeptide repeats J155_04259 SM00220 Serine/Threonine protein kinases, catalytic domain J155_04263 SM00965 Secretin and TonB N terminus short domain J155_04265 SM00915 Jacalin-like lectin domain J155_04271 SM00382 ATPases associated with a variety of cellular activities J155_04271 SM01086 C-terminal, D2-small domain, of ClpB protein J155_04279 SM00342 helix_turn_helix, arabinose operon control protein J155_04281 SM01266 J155_04281 J155_04284 SM00155 Phospholipase D. Active site motifs. J155_04313 SM00421 helix_turn_helix, Lux Regulon J155_04313 SM00448 cheY-homologous receiver domain J155_04323 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J155_04327 SM00346 helix_turn_helix isocitrate lyase regulation J155_04329 SM00091 PAS domain J155_04329 SM00387 Histidine kinase-like ATPases J155_04329 SM00388 His Kinase A (phosphoacceptor) domain J155_04329 SM00448 cheY-homologous receiver domain J155_04334 SM00564 beta-propeller repeat J155_04344 SM00382 ATPases associated with a variety of cellular activities J155_04346 SM00836 DALR anticodon binding domain J155_04348 SM00382 ATPases associated with a variety of cellular activities J155_04362 SM00354 helix_turn _helix lactose operon repressor J155_04365 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J155_04367 SM00758 J155_04367 J155_04367 SM01217 J155_04367 J155_04371 SM00612 J155_04371 J155_04378 SM01007 Class II Aldolase and Adducin N-terminal domain J155_04383 SM00633 Glycosyl hydrolase family 10 J155_04386 SM00633 Glycosyl hydrolase family 10 J155_04388 SM00633 Glycosyl hydrolase family 10 J155_04402 SM00829 Enoylreductase J155_04403 SM00563 Phosphate acyltransferases J155_04405 SM00354 helix_turn _helix lactose operon repressor J155_04409 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family J155_04417 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J155_04417 SM00388 His Kinase A (phosphoacceptor) domain J155_04420 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain J155_04420 SM01232 J155_04420 J155_04428 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J155_04428 SM00091 PAS domain J155_04439 SM00347 helix_turn_helix multiple antibiotic resistance protein J155_04446 SM00155 Phospholipase D. Active site motifs. J155_04462 SM00796 Allophanate hydrolase subunit 1 J155_04462 SM00797 Allophanate hydrolase subunit 2 J155_04462 SM00878 Biotin carboxylase C-terminal domain J155_04476 SM00382 ATPases associated with a variety of cellular activities J155_04486 SM00829 Enoylreductase J155_04494 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J155_04494 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J155_04494 SM00091 PAS domain J155_04494 SM00267 diguanylate cyclase J155_04500 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase J155_04506 SM00014 Acid phosphatase homologues J155_04508 SM00028 Tetratricopeptide repeats