locus-tag class description J172_00013 PF07015 VirC1 protein J172_00017 PF03377 TAL effector repeat J172_00021 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system J172_00023 PF00239 Resolvase, N terminal domain J172_00023 PF02796 Helix-turn-helix domain of resolvase J172_00028 PF13700 Domain of unknown function (DUF4158) J172_00028 PF01526 Tn3 transposase DDE domain J172_00029 PF13700 Domain of unknown function (DUF4158) J172_00029 PF01526 Tn3 transposase DDE domain J172_00032 PF02796 Helix-turn-helix domain of resolvase J172_00032 PF00239 Resolvase, N terminal domain J172_00033 PF03377 TAL effector repeat J172_00041 PF13406 Transglycosylase SLT domain J172_00042 PF01526 Tn3 transposase DDE domain J172_00042 PF13700 Domain of unknown function (DUF4158) J172_00047 PF01527 Transposase J172_00048 PF03377 TAL effector repeat J172_00052 PF07015 VirC1 protein J172_00065 PF07057 DNA helicase TraI J172_00065 PF18340 DNA relaxase TraI 2B/2B-like domain J172_00065 PF08751 TrwC relaxase J172_00065 PF18272 single-stranded DNA binding TraI N-terminal subdomain J172_00065 PF18272 single-stranded DNA binding TraI N-terminal subdomain J172_00065 PF07057 DNA helicase TraI J172_00065 PF18340 DNA relaxase TraI 2B/2B-like domain J172_00065 PF08751 TrwC relaxase J172_00070 PF01464 Transglycosylase SLT domain J172_00071 PF00437 Type II/IV secretion system protein J172_00072 PF03743 Bacterial conjugation TrbI-like protein J172_00073 PF03524 Conjugal transfer protein J172_00085 PF01527 Transposase J172_00088 PF06613 KorB C-terminal beta-barrel domain J172_00088 PF08535 KorB domain J172_00088 PF02195 ParB-like nuclease domain J172_00089 PF13614 AAA domain J172_00094 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin J172_00095 PF02796 Helix-turn-helix domain of resolvase J172_00095 PF00239 Resolvase, N terminal domain J172_00096 PF13276 HTH-like domain J172_00096 PF13333 Integrase core domain J172_00096 PF00665 Integrase core domain J172_00098 PF03377 TAL effector repeat J172_00099 PF01526 Tn3 transposase DDE domain J172_00099 PF13700 Domain of unknown function (DUF4158) J172_00100 PF01526 Tn3 transposase DDE domain J172_00100 PF13700 Domain of unknown function (DUF4158) J172_00103 PF00239 Resolvase, N terminal domain J172_00103 PF02796 Helix-turn-helix domain of resolvase J172_00104 PF11638 DnaA N-terminal domain J172_00104 PF00308 Bacterial dnaA protein J172_00104 PF08299 Bacterial dnaA protein helix-turn-helix J172_00105 PF00712 DNA polymerase III beta subunit, N-terminal domain J172_00105 PF02768 DNA polymerase III beta subunit, C-terminal domain J172_00105 PF02767 DNA polymerase III beta subunit, central domain J172_00106 PF02463 RecF/RecN/SMC N terminal domain J172_00108 PF00204 DNA gyrase B J172_00108 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_00108 PF01751 Toprim domain J172_00108 PF18053 DNA gyrase B subunit insert domain J172_00108 PF00986 DNA gyrase B subunit, carboxyl terminus J172_00110 PF01435 Peptidase family M48 J172_00112 PF03544 Gram-negative bacterial TonB protein C-terminal J172_00113 PF01618 MotA/TolQ/ExbB proton channel family J172_00114 PF02472 Biopolymer transport protein ExbD/TolR J172_00115 PF02472 Biopolymer transport protein ExbD/TolR J172_00116 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ J172_00118 PF13091 PLD-like domain J172_00118 PF13396 Phospholipase_D-nuclease N-terminal J172_00121 PF04055 Radical SAM superfamily J172_00123 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J172_00126 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J172_00126 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J172_00127 PF03572 Peptidase family S41 J172_00127 PF13180 PDZ domain J172_00128 PF01551 Peptidase family M23 J172_00130 PF04389 Peptidase family M28 J172_00132 PF00150 Cellulase (glycosyl hydrolase family 5) J172_00133 PF00150 Cellulase (glycosyl hydrolase family 5) J172_00134 PF00150 Cellulase (glycosyl hydrolase family 5) J172_00135 PF00107 Zinc-binding dehydrogenase J172_00135 PF08240 Alcohol dehydrogenase GroES-like domain J172_00136 PF07992 Pyridine nucleotide-disulphide oxidoreductase J172_00136 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J172_00137 PF01645 Conserved region in glutamate synthase J172_00137 PF01493 GXGXG motif J172_00137 PF00310 Glutamine amidotransferases class-II J172_00137 PF04898 Glutamate synthase central domain J172_00141 PF01804 Penicillin amidase J172_00143 PF03466 LysR substrate binding domain J172_00143 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_00146 PF02397 Bacterial sugar transferase J172_00147 PF02350 UDP-N-acetylglucosamine 2-epimerase J172_00149 PF03808 Glycosyl transferase WecB/TagA/CpsF family J172_00150 PF00534 Glycosyl transferases group 1 J172_00150 PF13439 Glycosyltransferase Family 4 J172_00154 PF00733 Asparagine synthase J172_00154 PF13537 Glutamine amidotransferase domain J172_00157 PF16363 GDP-mannose 4,6 dehydratase J172_00160 PF00664 ABC transporter transmembrane region J172_00160 PF00005 ABC transporter J172_00162 PF00733 Asparagine synthase J172_00162 PF13537 Glutamine amidotransferase domain J172_00167 PF00685 Sulfotransferase domain J172_00184 PF00271 Helicase conserved C-terminal domain J172_00184 PF09369 Domain of unknown function (DUF1998) J172_00184 PF00270 DEAD/DEAH box helicase J172_00185 PF03006 Haemolysin-III related J172_00188 PF00106 short chain dehydrogenase J172_00190 PF03466 LysR substrate binding domain J172_00190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_00194 PF02525 Flavodoxin-like fold J172_00196 PF01527 Transposase J172_00205 PF05532 CsbD-like J172_00209 PF16485 Protealysin propeptide J172_00209 PF02868 Thermolysin metallopeptidase, alpha-helical domain J172_00209 PF01447 Thermolysin metallopeptidase, catalytic domain J172_00211 PF00293 NUDIX domain J172_00211 PF13344 Haloacid dehalogenase-like hydrolase J172_00214 PF00085 Thioredoxin J172_00215 PF08946 Osmosensory transporter coiled coil J172_00215 PF00083 Sugar (and other) transporter J172_00223 PF17863 AAA lid domain J172_00223 PF07726 ATPase family associated with various cellular activities (AAA) J172_00229 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain J172_00230 PF00155 Aminotransferase class I and II J172_00231 PF07715 TonB-dependent Receptor Plug Domain J172_00231 PF00593 TonB dependent receptor J172_00233 PF07883 Cupin domain J172_00234 PF00171 Aldehyde dehydrogenase family J172_00238 PF02735 Ku70/Ku80 beta-barrel domain J172_00239 PF01070 FMN-dependent dehydrogenase J172_00240 PF00144 Beta-lactamase J172_00241 PF07730 Histidine kinase J172_00242 PF00196 Bacterial regulatory proteins, luxR family J172_00242 PF00072 Response regulator receiver domain J172_00246 PF18500 CadC C-terminal domain 1 J172_00246 PF00486 Transcriptional regulatory protein, C terminal J172_00247 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J172_00247 PF12241 Trans-2-enoyl-CoA reductase catalytic region J172_00247 PF07055 Enoyl reductase FAD binding domain J172_00249 PF00294 pfkB family carbohydrate kinase J172_00260 PF01527 Transposase J172_00261 PF00665 Integrase core domain J172_00261 PF13276 HTH-like domain J172_00261 PF13333 Integrase core domain J172_00262 PF00128 Alpha amylase, catalytic domain J172_00262 PF11896 Domain of unknown function (DUF3416) J172_00263 PF00128 Alpha amylase, catalytic domain J172_00263 PF16657 Maltogenic Amylase, C-terminal domain J172_00264 PF00128 Alpha amylase, catalytic domain J172_00264 PF02806 Alpha amylase, C-terminal all-beta domain J172_00264 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J172_00266 PF00248 Aldo/keto reductase family J172_00267 PF00135 Carboxylesterase family J172_00268 PF07859 alpha/beta hydrolase fold J172_00268 PF13472 GDSL-like Lipase/Acylhydrolase family J172_00270 PF03480 Bacterial extracellular solute-binding protein, family 7 J172_00272 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J172_00273 PF04616 Glycosyl hydrolases family 43 J172_00273 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J172_00274 PF00356 Bacterial regulatory proteins, lacI family J172_00275 PF04962 KduI/IolB family J172_00278 PF00657 GDSL-like Lipase/Acylhydrolase J172_00281 PF00351 Biopterin-dependent aromatic amino acid hydroxylase J172_00282 PF01037 Lrp/AsnC ligand binding domain J172_00283 PF00593 TonB dependent receptor J172_00283 PF07715 TonB-dependent Receptor Plug Domain J172_00283 PF07660 Secretin and TonB N terminus short domain J172_00284 PF01734 Patatin-like phospholipase J172_00286 PF00005 ABC transporter J172_00289 PF00005 ABC transporter J172_00290 PF00528 Binding-protein-dependent transport system inner membrane component J172_00292 PF12867 DinB superfamily J172_00292 PF03781 Sulfatase-modifying factor enzyme 1 J172_00295 PF01381 Helix-turn-helix J172_00299 PF01883 Iron-sulfur cluster assembly protein J172_00299 PF10609 NUBPL iron-transfer P-loop NTPase J172_00302 PF13091 PLD-like domain J172_00303 PF03061 Thioesterase superfamily J172_00309 PF00107 Zinc-binding dehydrogenase J172_00309 PF08240 Alcohol dehydrogenase GroES-like domain J172_00311 PF02673 Bacitracin resistance protein BacA J172_00312 PF03951 Glutamine synthetase, beta-Grasp domain J172_00312 PF00120 Glutamine synthetase, catalytic domain J172_00313 PF00543 Nitrogen regulatory protein P-II J172_00314 PF00909 Ammonium Transporter Family J172_00315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_00315 PF00512 His Kinase A (phospho-acceptor) domain J172_00315 PF00989 PAS fold J172_00316 PF00158 Sigma-54 interaction domain J172_00316 PF00072 Response regulator receiver domain J172_00316 PF02954 Bacterial regulatory protein, Fis family J172_00317 PF00080 Copper/zinc superoxide dismutase (SODC) J172_00318 PF00080 Copper/zinc superoxide dismutase (SODC) J172_00319 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J172_00321 PF02803 Thiolase, C-terminal domain J172_00321 PF00108 Thiolase, N-terminal domain J172_00328 PF00581 Rhodanese-like domain J172_00329 PF02556 Preprotein translocase subunit SecB J172_00330 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J172_00330 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J172_00332 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J172_00332 PF00205 Thiamine pyrophosphate enzyme, central domain J172_00332 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J172_00333 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_00334 PF02954 Bacterial regulatory protein, Fis family J172_00334 PF00158 Sigma-54 interaction domain J172_00334 PF00072 Response regulator receiver domain J172_00337 PF07690 Major Facilitator Superfamily J172_00338 PF00588 SpoU rRNA Methylase family J172_00341 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J172_00341 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J172_00342 PF13784 Fic/DOC family N-terminal J172_00342 PF02661 Fic/DOC family J172_00343 PF00561 alpha/beta hydrolase fold J172_00344 PF03692 Putative zinc- or iron-chelating domain J172_00345 PF00501 AMP-binding enzyme J172_00347 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family J172_00349 PF01820 D-ala D-ala ligase N-terminus J172_00349 PF07478 D-ala D-ala ligase C-terminus J172_00351 PF03109 ABC1 family J172_00353 PF00849 RNA pseudouridylate synthase J172_00355 PF00472 RF-1 domain J172_00357 PF01112 Asparaginase J172_00358 PF01432 Peptidase family M3 J172_00359 PF12706 Beta-lactamase superfamily domain J172_00362 PF12833 Helix-turn-helix domain J172_00363 PF00999 Sodium/hydrogen exchanger family J172_00364 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_00364 PF03466 LysR substrate binding domain J172_00365 PF01274 Malate synthase J172_00366 PF00463 Isocitrate lyase family J172_00367 PF00990 Diguanylate cyclase, GGDEF domain J172_00372 PF00326 Prolyl oligopeptidase family J172_00373 PF02785 Biotin carboxylase C-terminal domain J172_00373 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J172_00373 PF00364 Biotin-requiring enzyme J172_00373 PF00289 Biotin carboxylase, N-terminal domain J172_00374 PF01039 Carboxyl transferase domain J172_00375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J172_00375 PF02770 Acyl-CoA dehydrogenase, middle domain J172_00375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J172_00386 PF07683 Cobalamin synthesis protein cobW C-terminal domain J172_00386 PF02492 CobW/HypB/UreG, nucleotide-binding domain J172_00390 PF03969 AFG1-like ATPase J172_00391 PF01047 MarR family J172_00392 PF02566 OsmC-like protein J172_00397 PF16884 N-terminal domain of oxidoreductase J172_00397 PF00107 Zinc-binding dehydrogenase J172_00400 PF00849 RNA pseudouridylate synthase J172_00401 PF00593 TonB dependent receptor J172_00403 PF04408 Helicase associated domain (HA2) J172_00403 PF00271 Helicase conserved C-terminal domain J172_00403 PF08482 ATP-dependent helicase C-terminal J172_00403 PF00270 DEAD/DEAH box helicase J172_00404 PF07308 Protein of unknown function (DUF1456) J172_00405 PF00576 HIUase/Transthyretin family J172_00406 PF13454 FAD-NAD(P)-binding J172_00407 PF01014 Uricase J172_00407 PF09349 OHCU decarboxylase J172_00410 PF00266 Aminotransferase class-V J172_00411 PF01546 Peptidase family M20/M25/M40 J172_00411 PF07687 Peptidase dimerisation domain J172_00412 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_00412 PF03466 LysR substrate binding domain J172_00413 PF07690 Major Facilitator Superfamily J172_00416 PF01425 Amidase J172_00417 PF01156 Inosine-uridine preferring nucleoside hydrolase J172_00419 PF00860 Permease family J172_00420 PF00111 2Fe-2S iron-sulfur cluster binding domain J172_00421 PF00355 Rieske [2Fe-2S] domain J172_00422 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_00422 PF03466 LysR substrate binding domain J172_00423 PF01026 TatD related DNase J172_00426 PF03466 LysR substrate binding domain J172_00426 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_00427 PF07690 Major Facilitator Superfamily J172_00430 PF02146 Sir2 family J172_00431 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J172_00432 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J172_00432 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J172_00434 PF00551 Formyl transferase J172_00435 PF00072 Response regulator receiver domain J172_00435 PF00486 Transcriptional regulatory protein, C terminal J172_00436 PF00512 His Kinase A (phospho-acceptor) domain J172_00436 PF00672 HAMP domain J172_00436 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_00437 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J172_00437 PF00529 HlyD membrane-fusion protein of T1SS J172_00438 PF00873 AcrB/AcrD/AcrF family J172_00439 PF02321 Outer membrane efflux protein J172_00441 PF02219 Methylenetetrahydrofolate reductase J172_00442 PF02677 Epoxyqueuosine reductase QueH J172_00443 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_00443 PF03466 LysR substrate binding domain J172_00444 PF03358 NADPH-dependent FMN reductase J172_00446 PF01717 Cobalamin-independent synthase, Catalytic domain J172_00446 PF08267 Cobalamin-independent synthase, N-terminal domain J172_00447 PF03812 2-keto-3-deoxygluconate permease J172_00449 PF05368 NmrA-like family J172_00450 PF01638 HxlR-like helix-turn-helix J172_00454 PF13276 HTH-like domain J172_00454 PF13333 Integrase core domain J172_00454 PF00665 Integrase core domain J172_00455 PF01527 Transposase J172_00456 PF00589 Phage integrase family J172_00456 PF13495 Phage integrase, N-terminal SAM-like domain J172_00457 PF00920 Dehydratase family J172_00460 PF00132 Bacterial transferase hexapeptide (six repeats) J172_00461 PF07690 Major Facilitator Superfamily J172_00462 PF11871 Domain of unknown function (DUF3391) J172_00462 PF01966 HD domain J172_00466 PF00171 Aldehyde dehydrogenase family J172_00468 PF01494 FAD binding domain J172_00471 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J172_00471 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J172_00472 PF00230 Major intrinsic protein J172_00473 PF16901 C-terminal domain of alpha-glycerophosphate oxidase J172_00473 PF01266 FAD dependent oxidoreductase J172_00474 PF08220 DeoR-like helix-turn-helix domain J172_00474 PF00455 DeoR C terminal sensor domain J172_00476 PF00355 Rieske [2Fe-2S] domain J172_00477 PF01144 Coenzyme A transferase J172_00478 PF01144 Coenzyme A transferase J172_00479 PF00108 Thiolase, N-terminal domain J172_00479 PF02803 Thiolase, C-terminal domain J172_00480 PF00775 Dioxygenase J172_00480 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal J172_00482 PF00206 Lyase J172_00482 PF10397 Adenylosuccinate lyase C-terminus J172_00483 PF12146 Serine aminopeptidase, S33 J172_00484 PF02627 Carboxymuconolactone decarboxylase family J172_00486 PF01614 Bacterial transcriptional regulator J172_00486 PF09339 IclR helix-turn-helix domain J172_00488 PF07859 alpha/beta hydrolase fold J172_00489 PF10677 Protein of unknown function (DUF2490) J172_00490 PF13932 GidA associated domain J172_00490 PF01134 Glucose inhibited division protein A J172_00492 PF00291 Pyridoxal-phosphate dependent enzyme J172_00496 PF13649 Methyltransferase domain J172_00498 PF12697 Alpha/beta hydrolase family J172_00500 PF00155 Aminotransferase class I and II J172_00501 PF06968 Biotin and Thiamin Synthesis associated domain J172_00501 PF04055 Radical SAM superfamily J172_00503 PF01040 UbiA prenyltransferase family J172_00507 PF05819 NolX protein J172_00515 PF01313 Bacterial export proteins, family 3 J172_00516 PF00813 FliP family J172_00519 PF00771 FHIPEP family J172_00520 PF01312 FlhB HrpN YscU SpaS Family J172_00523 PF01514 Secretory protein of YscJ/FliF family J172_00526 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J172_00526 PF02874 ATP synthase alpha/beta family, beta-barrel domain J172_00526 PF18269 T3SS EscN ATPase C-terminal domain J172_00528 PF01311 Bacterial export proteins, family 1 J172_00531 PF01464 Transglycosylase SLT domain J172_00534 PF00924 Mechanosensitive ion channel J172_00534 PF12794 Mechanosensitive ion channel inner membrane domain 1 J172_00534 PF12795 Mechanosensitive ion channel porin domain J172_00535 PF00884 Sulfatase J172_00536 PF03109 ABC1 family J172_00537 PF05661 Protein of unknown function (DUF808) J172_00538 PF00072 Response regulator receiver domain J172_00538 PF00990 Diguanylate cyclase, GGDEF domain J172_00539 PF00534 Glycosyl transferases group 1 J172_00539 PF08323 Starch synthase catalytic domain J172_00540 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J172_00540 PF00128 Alpha amylase, catalytic domain J172_00540 PF02806 Alpha amylase, C-terminal all-beta domain J172_00541 PF11941 Domain of unknown function (DUF3459) J172_00541 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J172_00541 PF00128 Alpha amylase, catalytic domain J172_00542 PF02446 4-alpha-glucanotransferase J172_00543 PF00128 Alpha amylase, catalytic domain J172_00545 PF00128 Alpha amylase, catalytic domain J172_00545 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J172_00546 PF13460 NAD(P)H-binding J172_00549 PF06903 VirK protein J172_00550 PF02321 Outer membrane efflux protein J172_00553 PF00873 AcrB/AcrD/AcrF family J172_00556 PF00270 DEAD/DEAH box helicase J172_00556 PF00271 Helicase conserved C-terminal domain J172_00558 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J172_00558 PF02817 e3 binding domain J172_00558 PF00364 Biotin-requiring enzyme J172_00560 PF02779 Transketolase, pyrimidine binding domain J172_00560 PF02780 Transketolase, C-terminal domain J172_00561 PF00676 Dehydrogenase E1 component J172_00563 PF03301 Tryptophan 2,3-dioxygenase J172_00564 PF00854 POT family J172_00566 PF01047 MarR family J172_00567 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J172_00568 PF04209 homogentisate 1,2-dioxygenase J172_00571 PF03334 Na+/H+ antiporter subunit J172_00572 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) J172_00574 PF00361 Proton-conducting membrane transporter J172_00575 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J172_00576 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J172_00576 PF13244 Domain of unknown function (DUF4040) J172_00576 PF00361 Proton-conducting membrane transporter J172_00576 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J172_00579 PF01447 Thermolysin metallopeptidase, catalytic domain J172_00579 PF07504 Fungalysin/Thermolysin Propeptide Motif J172_00579 PF01483 Proprotein convertase P-domain J172_00579 PF02868 Thermolysin metallopeptidase, alpha-helical domain J172_00580 PF00182 Chitinase class I J172_00584 PF01259 SAICAR synthetase J172_00585 PF00226 DnaJ domain J172_00585 PF05099 Tellurite resistance protein TerB J172_00587 PF00834 Ribulose-phosphate 3 epimerase family J172_00588 PF00583 Acetyltransferase (GNAT) family J172_00589 PF00781 Diacylglycerol kinase catalytic domain J172_00590 PF04715 Anthranilate synthase component I, N terminal region J172_00590 PF00425 chorismate binding enzyme J172_00592 PF00117 Glutamine amidotransferase class-I J172_00594 PF02885 Glycosyl transferase family, helical bundle domain J172_00594 PF00591 Glycosyl transferase family, a/b domain J172_00595 PF00218 Indole-3-glycerol phosphate synthase J172_00597 PF00027 Cyclic nucleotide-binding domain J172_00597 PF00325 Bacterial regulatory proteins, crp family J172_00598 PF02675 S-adenosylmethionine decarboxylase J172_00599 PF00893 Small Multidrug Resistance protein J172_00600 PF03232 Ubiquinone biosynthesis protein COQ7 J172_00601 PF00572 Ribosomal protein L13 J172_00602 PF00380 Ribosomal protein S9/S16 J172_00605 PF00293 NUDIX domain J172_00606 PF00210 Ferritin-like domain J172_00607 PF00072 Response regulator receiver domain J172_00607 PF01627 Hpt domain J172_00607 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J172_00607 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_00607 PF00672 HAMP domain J172_00607 PF00512 His Kinase A (phospho-acceptor) domain J172_00608 PF00072 Response regulator receiver domain J172_00608 PF00486 Transcriptional regulatory protein, C terminal J172_00612 PF01521 Iron-sulphur cluster biosynthesis J172_00615 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain J172_00615 PF00293 NUDIX domain J172_00615 PF09297 NADH pyrophosphatase zinc ribbon domain J172_00616 PF03186 CobD/Cbib protein J172_00616 PF17113 Regulatory signalling modulator protein AmpE J172_00619 PF07690 Major Facilitator Superfamily J172_00620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_00620 PF03466 LysR substrate binding domain J172_00621 PF07690 Major Facilitator Superfamily J172_00622 PF12805 FUSC-like inner membrane protein yccS J172_00623 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J172_00623 PF02843 Phosphoribosylglycinamide synthetase, C domain J172_00623 PF02844 Phosphoribosylglycinamide synthetase, N domain J172_00625 PF01808 AICARFT/IMPCHase bienzyme J172_00625 PF02142 MGS-like domain J172_00626 PF01066 CDP-alcohol phosphatidyltransferase J172_00627 PF12147 Putative methyltransferase J172_00627 PF12146 Serine aminopeptidase, S33 J172_00628 PF00782 Dual specificity phosphatase, catalytic domain J172_00634 PF02954 Bacterial regulatory protein, Fis family J172_00637 PF01381 Helix-turn-helix J172_00642 PF02785 Biotin carboxylase C-terminal domain J172_00642 PF00289 Biotin carboxylase, N-terminal domain J172_00642 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J172_00644 PF00364 Biotin-requiring enzyme J172_00645 PF01220 Dehydroquinase class II J172_00646 PF02683 Cytochrome C biogenesis protein transmembrane region J172_00646 PF11412 Disulphide bond corrector protein DsbC J172_00647 PF03091 CutA1 divalent ion tolerance protein J172_00650 PF01852 START domain J172_00652 PF00106 short chain dehydrogenase J172_00653 PF04231 Endonuclease I J172_00654 PF00166 Chaperonin 10 Kd subunit J172_00655 PF00118 TCP-1/cpn60 chaperonin family J172_00657 PF00593 TonB dependent receptor J172_00657 PF07715 TonB-dependent Receptor Plug Domain J172_00658 PF00793 DAHP synthetase I family J172_00661 PF08450 SMP-30/Gluconolactonase/LRE-like region J172_00663 PF03710 Glutamate-ammonia ligase adenylyltransferase J172_00663 PF08335 GlnD PII-uridylyltransferase J172_00664 PF02592 Putative vitamin uptake transporter J172_00667 PF00881 Nitroreductase family J172_00668 PF04264 YceI-like domain J172_00672 PF16957 Malonate decarboxylase, alpha subunit, transporter J172_00673 PF06857 Malonate decarboxylase delta subunit (MdcD) J172_00674 PF01039 Carboxyl transferase domain J172_00676 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG J172_00677 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase J172_00679 PF00698 Acyl transferase domain J172_00681 PF07729 FCD domain J172_00681 PF00392 Bacterial regulatory proteins, gntR family J172_00682 PF13419 Haloacid dehalogenase-like hydrolase J172_00688 PF07745 Glycosyl hydrolase family 53 J172_00689 PF00456 Transketolase, thiamine diphosphate binding domain J172_00689 PF17831 Pyruvate dehydrogenase E1 component middle domain J172_00690 PF13276 HTH-like domain J172_00690 PF13333 Integrase core domain J172_00690 PF00665 Integrase core domain J172_00691 PF01527 Transposase J172_00692 PF00106 short chain dehydrogenase J172_00695 PF00106 short chain dehydrogenase J172_00697 PF13409 Glutathione S-transferase, N-terminal domain J172_00702 PF12823 Domain of unknown function (DUF3817) J172_00702 PF03176 MMPL family J172_00703 PF00326 Prolyl oligopeptidase family J172_00703 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J172_00704 PF07759 Protein of unknown function (DUF1615) J172_00705 PF00990 Diguanylate cyclase, GGDEF domain J172_00705 PF05230 MASE2 domain J172_00709 PF00892 EamA-like transporter family J172_00710 PF00497 Bacterial extracellular solute-binding proteins, family 3 J172_00713 PF00324 Amino acid permease J172_00715 PF01544 CorA-like Mg2+ transporter protein J172_00717 PF01204 Trehalase J172_00719 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J172_00719 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J172_00724 PF00990 Diguanylate cyclase, GGDEF domain J172_00724 PF08447 PAS fold J172_00724 PF08448 PAS fold J172_00724 PF00563 EAL domain J172_00725 PF02203 Tar ligand binding domain homologue J172_00725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_00725 PF00672 HAMP domain J172_00726 PF00553 Cellulose binding domain J172_00726 PF00150 Cellulase (glycosyl hydrolase family 5) J172_00727 PF00916 Sulfate permease family J172_00727 PF01740 STAS domain J172_00728 PF00990 Diguanylate cyclase, GGDEF domain J172_00728 PF08448 PAS fold J172_00731 PF13632 Glycosyl transferase family group 2 J172_00733 PF06580 Histidine kinase J172_00733 PF07694 5TMR of 5TMR-LYT J172_00734 PF00072 Response regulator receiver domain J172_00734 PF04397 LytTr DNA-binding domain J172_00735 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J172_00735 PF03900 Porphobilinogen deaminase, C-terminal domain J172_00740 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J172_00740 PF00326 Prolyl oligopeptidase family J172_00742 PF00155 Aminotransferase class I and II J172_00743 PF00326 Prolyl oligopeptidase family J172_00743 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J172_00744 PF04304 Protein of unknown function (DUF454) J172_00746 PF01678 Diaminopimelate epimerase J172_00748 PF02899 Phage integrase, N-terminal SAM-like domain J172_00748 PF00589 Phage integrase family J172_00749 PF00227 Proteasome subunit J172_00750 PF10431 C-terminal, D2-small domain, of ClpB protein J172_00750 PF07724 AAA domain (Cdc48 subfamily) J172_00750 PF00004 ATPase family associated with various cellular activities (AAA) J172_00752 PF13673 Acetyltransferase (GNAT) domain J172_00753 PF13533 Biotin-lipoyl like J172_00755 PF01209 ubiE/COQ5 methyltransferase family J172_00756 PF03707 Bacterial signalling protein N terminal repeat J172_00756 PF00990 Diguanylate cyclase, GGDEF domain J172_00756 PF00563 EAL domain J172_00757 PF11838 ERAP1-like C-terminal domain J172_00757 PF01433 Peptidase family M1 domain J172_00760 PF13360 PQQ-like domain J172_00761 PF00497 Bacterial extracellular solute-binding proteins, family 3 J172_00764 PF08240 Alcohol dehydrogenase GroES-like domain J172_00764 PF00107 Zinc-binding dehydrogenase J172_00766 PF00158 Sigma-54 interaction domain J172_00766 PF01590 GAF domain J172_00766 PF02954 Bacterial regulatory protein, Fis family J172_00767 PF00294 pfkB family carbohydrate kinase J172_00769 PF04085 rod shape-determining protein MreC J172_00771 PF00905 Penicillin binding protein transpeptidase domain J172_00771 PF03717 Penicillin-binding Protein dimerisation domain J172_00772 PF01098 Cell cycle protein J172_00773 PF00295 Glycosyl hydrolases family 28 J172_00774 PF13406 Transglycosylase SLT domain J172_00775 PF05036 Sporulation related domain J172_00775 PF03330 Lytic transglycolase J172_00776 PF07943 Penicillin-binding protein 5, C-terminal domain J172_00776 PF00768 D-alanyl-D-alanine carboxypeptidase J172_00778 PF04359 Protein of unknown function (DUF493) J172_00779 PF03099 Biotin/lipoate A/B protein ligase family J172_00780 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family J172_00780 PF04055 Radical SAM superfamily J172_00781 PF11818 C-terminal domain of tail specific protease (DUF3340) J172_00781 PF00595 PDZ domain J172_00781 PF17804 Tail specific protease N-terminal domain J172_00781 PF03572 Peptidase family S41 J172_00783 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_00783 PF03466 LysR substrate binding domain J172_00785 PF01467 Cytidylyltransferase-like J172_00785 PF00293 NUDIX domain J172_00792 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J172_00792 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J172_00793 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J172_00793 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J172_00794 PF04972 BON domain J172_00795 PF00360 Phytochrome region J172_00795 PF08446 PAS fold J172_00795 PF01590 GAF domain J172_00795 PF00512 His Kinase A (phospho-acceptor) domain J172_00795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_00796 PF00072 Response regulator receiver domain J172_00797 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_00797 PF00512 His Kinase A (phospho-acceptor) domain J172_00798 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J172_00807 PF03958 Bacterial type II/III secretion system short domain J172_00807 PF00263 Bacterial type II and III secretion system protein J172_00808 PF00437 Type II/IV secretion system protein J172_00809 PF00482 Type II secretion system (T2SS), protein F J172_00810 PF07963 Prokaryotic N-terminal methylation motif J172_00810 PF08334 Type II secretion system (T2SS), protein G J172_00811 PF07963 Prokaryotic N-terminal methylation motif J172_00811 PF12019 Type II transport protein GspH J172_00813 PF07963 Prokaryotic N-terminal methylation motif J172_00813 PF11612 Type II secretion system (T2SS), protein J J172_00814 PF03934 Type II secretion system (T2SS), protein K J172_00820 PF16355 Domain of unknown function (DUF4982) J172_00820 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J172_00820 PF00703 Glycosyl hydrolases family 2 J172_00820 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J172_00820 PF02837 Glycosyl hydrolases family 2, sugar binding domain J172_00825 PF07690 Major Facilitator Superfamily J172_00826 PF00356 Bacterial regulatory proteins, lacI family J172_00827 PF01380 SIS domain J172_00828 PF01979 Amidohydrolase family J172_00830 PF12627 Probable RNA and SrmB- binding site of polymerase A J172_00830 PF01743 Poly A polymerase head domain J172_00830 PF01966 HD domain J172_00831 PF00732 GMC oxidoreductase J172_00831 PF05199 GMC oxidoreductase J172_00832 PF00171 Aldehyde dehydrogenase family J172_00833 PF02028 BCCT, betaine/carnitine/choline family transporter J172_00835 PF01323 DSBA-like thioredoxin domain J172_00838 PF00034 Cytochrome c J172_00839 PF01926 50S ribosome-binding GTPase J172_00840 PF10996 Beta-Casp domain J172_00840 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain J172_00840 PF00753 Metallo-beta-lactamase superfamily J172_00842 PF04107 Glutamate-cysteine ligase family 2(GCS2) J172_00843 PF00672 HAMP domain J172_00843 PF00512 His Kinase A (phospho-acceptor) domain J172_00843 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_00844 PF00072 Response regulator receiver domain J172_00844 PF00486 Transcriptional regulatory protein, C terminal J172_00847 PF02583 Metal-sensitive transcriptional repressor J172_00848 PF08240 Alcohol dehydrogenase GroES-like domain J172_00848 PF00107 Zinc-binding dehydrogenase J172_00849 PF04828 Glutathione-dependent formaldehyde-activating enzyme J172_00850 PF00756 Putative esterase J172_00851 PF00155 Aminotransferase class I and II J172_00851 PF00392 Bacterial regulatory proteins, gntR family J172_00852 PF02567 Phenazine biosynthesis-like protein J172_00853 PF00892 EamA-like transporter family J172_00855 PF00005 ABC transporter J172_00855 PF12848 ABC transporter J172_00857 PF00464 Serine hydroxymethyltransferase J172_00858 PF03477 ATP cone domain J172_00860 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J172_00860 PF01872 RibD C-terminal domain J172_00863 PF00677 Lumazine binding domain J172_00864 PF00925 GTP cyclohydrolase II J172_00864 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J172_00865 PF00885 6,7-dimethyl-8-ribityllumazine synthase J172_00866 PF01029 NusB family J172_00867 PF00586 AIR synthase related protein, N-terminal domain J172_00867 PF02769 AIR synthase related protein, C-terminal domain J172_00871 PF03814 Potassium-transporting ATPase A subunit J172_00873 PF02669 K+-transporting ATPase, c chain J172_00874 PF13493 Domain of unknown function (DUF4118) J172_00874 PF00512 His Kinase A (phospho-acceptor) domain J172_00874 PF02702 Osmosensitive K+ channel His kinase sensor domain J172_00874 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_00874 PF13492 GAF domain J172_00875 PF00072 Response regulator receiver domain J172_00875 PF00486 Transcriptional regulatory protein, C terminal J172_00878 PF02913 FAD linked oxidases, C-terminal domain J172_00878 PF01565 FAD binding domain J172_00879 PF04307 LexA-binding, inner membrane-associated putative hydrolase J172_00880 PF02021 Uncharacterised protein family UPF0102 J172_00882 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J172_00887 PF02381 MraZ protein, putative antitoxin-like J172_00888 PF01795 MraW methylase family J172_00889 PF04999 Cell division protein FtsL J172_00890 PF03717 Penicillin-binding Protein dimerisation domain J172_00890 PF00905 Penicillin binding protein transpeptidase domain J172_00891 PF02875 Mur ligase family, glutamate ligase domain J172_00891 PF01225 Mur ligase family, catalytic domain J172_00891 PF08245 Mur ligase middle domain J172_00892 PF08245 Mur ligase middle domain J172_00892 PF02875 Mur ligase family, glutamate ligase domain J172_00892 PF01225 Mur ligase family, catalytic domain J172_00893 PF00953 Glycosyl transferase family 4 J172_00894 PF01098 Cell cycle protein J172_00895 PF04101 Glycosyltransferase family 28 C-terminal domain J172_00895 PF03033 Glycosyltransferase family 28 N-terminal domain J172_00896 PF08245 Mur ligase middle domain J172_00896 PF01225 Mur ligase family, catalytic domain J172_00896 PF02875 Mur ligase family, glutamate ligase domain J172_00897 PF01820 D-ala D-ala ligase N-terminus J172_00897 PF07478 D-ala D-ala ligase C-terminus J172_00898 PF08478 POTRA domain, FtsQ-type J172_00898 PF03799 Cell division protein FtsQ J172_00899 PF02491 SHS2 domain inserted in FTSA J172_00900 PF00091 Tubulin/FtsZ family, GTPase domain J172_00900 PF12327 FtsZ family, C-terminal domain J172_00901 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase J172_00903 PF01476 LysM domain J172_00903 PF08525 Opacity-associated protein A N-terminal motif J172_00903 PF01551 Peptidase family M23 J172_00904 PF02810 SEC-C motif J172_00904 PF01043 SecA preprotein cross-linking domain J172_00904 PF07516 SecA Wing and Scaffold domain J172_00904 PF07517 SecA DEAD-like domain J172_00905 PF00293 NUDIX domain J172_00907 PF02219 Methylenetetrahydrofolate reductase J172_00910 PF08659 KR domain J172_00910 PF00107 Zinc-binding dehydrogenase J172_00910 PF08240 Alcohol dehydrogenase GroES-like domain J172_00910 PF16197 Ketoacyl-synthetase C-terminal extension J172_00910 PF00109 Beta-ketoacyl synthase, N-terminal domain J172_00910 PF00698 Acyl transferase domain J172_00910 PF02801 Beta-ketoacyl synthase, C-terminal domain J172_00910 PF00550 Phosphopantetheine attachment site J172_00910 PF14765 Polyketide synthase dehydratase J172_00911 PF09286 Pro-kumamolisin, activation domain J172_00911 PF00082 Subtilase family J172_00913 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J172_00914 PF00128 Alpha amylase, catalytic domain J172_00920 PF13649 Methyltransferase domain J172_00921 PF05221 S-adenosyl-L-homocysteine hydrolase J172_00921 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain J172_00924 PF00311 Phosphoenolpyruvate carboxylase J172_00929 PF00328 Histidine phosphatase superfamily (branch 2) J172_00930 PF02773 S-adenosylmethionine synthetase, C-terminal domain J172_00930 PF00438 S-adenosylmethionine synthetase, N-terminal domain J172_00930 PF02772 S-adenosylmethionine synthetase, central domain J172_00932 PF13649 Methyltransferase domain J172_00933 PF01207 Dihydrouridine synthase (Dus) J172_00936 PF00294 pfkB family carbohydrate kinase J172_00937 PF07670 Nucleoside recognition J172_00937 PF01773 Na+ dependent nucleoside transporter N-terminus J172_00937 PF07662 Na+ dependent nucleoside transporter C-terminus J172_00938 PF00248 Aldo/keto reductase family J172_00940 PF00593 TonB dependent receptor J172_00940 PF07715 TonB-dependent Receptor Plug Domain J172_00945 PF00528 Binding-protein-dependent transport system inner membrane component J172_00946 PF00005 ABC transporter J172_00948 PF02668 Taurine catabolism dioxygenase TauD, TfdA family J172_00950 PF00005 ABC transporter J172_00951 PF13472 GDSL-like Lipase/Acylhydrolase family J172_00952 PF00486 Transcriptional regulatory protein, C terminal J172_00952 PF00072 Response regulator receiver domain J172_00953 PF00512 His Kinase A (phospho-acceptor) domain J172_00953 PF08521 Two-component sensor kinase N-terminal J172_00953 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_00955 PF01219 Prokaryotic diacylglycerol kinase J172_00959 PF01790 Prolipoprotein diacylglyceryl transferase J172_00960 PF00303 Thymidylate synthase J172_00962 PF00186 Dihydrofolate reductase J172_00963 PF00158 Sigma-54 interaction domain J172_00964 PF08028 Acyl-CoA dehydrogenase, C-terminal domain J172_00964 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J172_00965 PF00005 ABC transporter J172_00966 PF00528 Binding-protein-dependent transport system inner membrane component J172_00968 PF00296 Luciferase-like monooxygenase J172_00969 PF03358 NADPH-dependent FMN reductase J172_00973 PF00296 Luciferase-like monooxygenase J172_00974 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J172_00975 PF00528 Binding-protein-dependent transport system inner membrane component J172_00978 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J172_00978 PF00005 ABC transporter J172_00979 PF00149 Calcineurin-like phosphoesterase J172_00980 PF04379 ApaG domain J172_00981 PF00398 Ribosomal RNA adenine dimethylase J172_00982 PF04166 Pyridoxal phosphate biosynthetic protein PdxA J172_00983 PF09312 SurA N-terminal domain J172_00983 PF00639 PPIC-type PPIASE domain J172_00984 PF03968 OstA-like protein J172_00984 PF04453 LPS transport system D J172_00987 PF00850 Histone deacetylase domain J172_00988 PF01923 Cobalamin adenosyltransferase J172_00990 PF01494 FAD binding domain J172_00991 PF01494 FAD binding domain J172_00995 PF00392 Bacterial regulatory proteins, gntR family J172_00995 PF07729 FCD domain J172_00996 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J172_00997 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J172_00997 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit J172_00998 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_00998 PF03466 LysR substrate binding domain J172_00999 PF00501 AMP-binding enzyme J172_00999 PF13193 AMP-binding enzyme C-terminal domain J172_01000 PF00171 Aldehyde dehydrogenase family J172_01001 PF00378 Enoyl-CoA hydratase/isomerase J172_01005 PF08450 SMP-30/Gluconolactonase/LRE-like region J172_01006 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J172_01006 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J172_01007 PF18125 RlmM ferredoxin-like domain J172_01007 PF01728 FtsJ-like methyltransferase J172_01010 PF00892 EamA-like transporter family J172_01011 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J172_01011 PF00749 tRNA synthetases class I (E and Q), catalytic domain J172_01014 PF00072 Response regulator receiver domain J172_01014 PF00990 Diguanylate cyclase, GGDEF domain J172_01015 PF00512 His Kinase A (phospho-acceptor) domain J172_01015 PF01627 Hpt domain J172_01015 PF00072 Response regulator receiver domain J172_01015 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J172_01015 PF00672 HAMP domain J172_01015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_01016 PF00072 Response regulator receiver domain J172_01016 PF00196 Bacterial regulatory proteins, luxR family J172_01018 PF01625 Peptide methionine sulfoxide reductase J172_01020 PF00923 Transaldolase/Fructose-6-phosphate aldolase J172_01021 PF01272 Transcription elongation factor, GreA/GreB, C-term J172_01021 PF14760 Rnk N-terminus J172_01022 PF03466 LysR substrate binding domain J172_01022 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_01023 PF13192 Thioredoxin domain J172_01023 PF07992 Pyridine nucleotide-disulphide oxidoreductase J172_01024 PF00578 AhpC/TSA family J172_01024 PF10417 C-terminal domain of 1-Cys peroxiredoxin J172_01025 PF17827 PrmC N-terminal domain J172_01025 PF05175 Methyltransferase small domain J172_01026 PF00561 alpha/beta hydrolase fold J172_01028 PF00293 NUDIX domain J172_01029 PF01367 5'-3' exonuclease, C-terminal SAM fold J172_01029 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J172_01029 PF00476 DNA polymerase family A J172_01029 PF01612 3'-5' exonuclease J172_01035 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J172_01035 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J172_01035 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J172_01040 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J172_01041 PF02233 NAD(P) transhydrogenase beta subunit J172_01044 PF01063 Amino-transferase class IV J172_01045 PF04151 Bacterial pre-peptidase C-terminal domain J172_01045 PF00082 Subtilase family J172_01046 PF00082 Subtilase family J172_01046 PF04151 Bacterial pre-peptidase C-terminal domain J172_01047 PF04151 Bacterial pre-peptidase C-terminal domain J172_01047 PF00082 Subtilase family J172_01048 PF04073 Aminoacyl-tRNA editing domain J172_01050 PF17189 Glycosyl hydrolase family 30 beta sandwich domain J172_01050 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain J172_01053 PF03358 NADPH-dependent FMN reductase J172_01054 PF03631 Virulence factor BrkB J172_01055 PF08534 Redoxin J172_01056 PF00708 Acylphosphatase J172_01058 PF03976 Polyphosphate kinase 2 (PPK2) J172_01059 PF00994 Probable molybdopterin binding domain J172_01061 PF00472 RF-1 domain J172_01061 PF03462 PCRF domain J172_01062 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J172_01062 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J172_01062 PF01488 Shikimate / quinate 5-dehydrogenase J172_01064 PF03550 Outer membrane lipoprotein LolB J172_01065 PF08544 GHMP kinases C terminal J172_01065 PF00288 GHMP kinases N terminal domain J172_01067 PF14572 Phosphoribosyl synthetase-associated domain J172_01067 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J172_01068 PF14693 Ribosomal protein TL5, C-terminal domain J172_01068 PF01386 Ribosomal L25p family J172_01069 PF01195 Peptidyl-tRNA hydrolase J172_01070 PF06071 Protein of unknown function (DUF933) J172_01070 PF01926 50S ribosome-binding GTPase J172_01074 PF03143 Elongation factor Tu C-terminal domain J172_01074 PF03144 Elongation factor Tu domain 2 J172_01074 PF00009 Elongation factor Tu GTP binding domain J172_01076 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J172_01077 PF02357 Transcription termination factor nusG J172_01077 PF00467 KOW motif J172_01078 PF00298 Ribosomal protein L11, RNA binding domain J172_01078 PF03946 Ribosomal protein L11, N-terminal domain J172_01079 PF00687 Ribosomal protein L1p/L10e family J172_01080 PF00466 Ribosomal protein L10 J172_01081 PF16320 Ribosomal protein L7/L12 dimerisation domain J172_01081 PF00542 Ribosomal protein L7/L12 C-terminal domain J172_01083 PF10385 RNA polymerase beta subunit external 1 domain J172_01083 PF04563 RNA polymerase beta subunit J172_01083 PF04561 RNA polymerase Rpb2, domain 2 J172_01083 PF04565 RNA polymerase Rpb2, domain 3 J172_01083 PF04560 RNA polymerase Rpb2, domain 7 J172_01083 PF00562 RNA polymerase Rpb2, domain 6 J172_01084 PF04998 RNA polymerase Rpb1, domain 5 J172_01084 PF00623 RNA polymerase Rpb1, domain 2 J172_01084 PF04983 RNA polymerase Rpb1, domain 3 J172_01084 PF04997 RNA polymerase Rpb1, domain 1 J172_01084 PF05000 RNA polymerase Rpb1, domain 4 J172_01085 PF00164 Ribosomal protein S12/S23 J172_01086 PF00177 Ribosomal protein S7p/S5e J172_01087 PF03144 Elongation factor Tu domain 2 J172_01087 PF00009 Elongation factor Tu GTP binding domain J172_01087 PF00679 Elongation factor G C-terminus J172_01087 PF03764 Elongation factor G, domain IV J172_01087 PF14492 Elongation Factor G, domain II J172_01088 PF03143 Elongation factor Tu C-terminal domain J172_01088 PF03144 Elongation factor Tu domain 2 J172_01088 PF00009 Elongation factor Tu GTP binding domain J172_01089 PF00338 Ribosomal protein S10p/S20e J172_01090 PF00297 Ribosomal protein L3 J172_01091 PF00573 Ribosomal protein L4/L1 family J172_01092 PF00276 Ribosomal protein L23 J172_01093 PF00181 Ribosomal Proteins L2, RNA binding domain J172_01093 PF03947 Ribosomal Proteins L2, C-terminal domain J172_01094 PF00203 Ribosomal protein S19 J172_01095 PF00237 Ribosomal protein L22p/L17e J172_01096 PF07650 KH domain J172_01096 PF00189 Ribosomal protein S3, C-terminal domain J172_01097 PF00252 Ribosomal protein L16p/L10e J172_01098 PF00831 Ribosomal L29 protein J172_01099 PF00366 Ribosomal protein S17 J172_01100 PF00238 Ribosomal protein L14p/L23e J172_01101 PF00467 KOW motif J172_01101 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J172_01102 PF00673 ribosomal L5P family C-terminus J172_01102 PF00281 Ribosomal protein L5 J172_01103 PF00253 Ribosomal protein S14p/S29e J172_01104 PF00410 Ribosomal protein S8 J172_01105 PF00347 Ribosomal protein L6 J172_01106 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J172_01107 PF03719 Ribosomal protein S5, C-terminal domain J172_01107 PF00333 Ribosomal protein S5, N-terminal domain J172_01108 PF00327 Ribosomal protein L30p/L7e J172_01109 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J172_01110 PF00344 SecY translocase J172_01111 PF00416 Ribosomal protein S13/S18 J172_01112 PF00411 Ribosomal protein S11 J172_01113 PF00163 Ribosomal protein S4/S9 N-terminal domain J172_01113 PF01479 S4 domain J172_01114 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J172_01114 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J172_01114 PF01000 RNA polymerase Rpb3/RpoA insert domain J172_01115 PF01196 Ribosomal protein L17 J172_01116 PF02600 Disulfide bond formation protein DsbB J172_01118 PF01474 Class-II DAHP synthetase family J172_01120 PF01425 Amidase J172_01123 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J172_01124 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J172_01124 PF00056 lactate/malate dehydrogenase, NAD binding domain J172_01125 PF00043 Glutathione S-transferase, C-terminal domain J172_01125 PF02798 Glutathione S-transferase, N-terminal domain J172_01127 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J172_01127 PF07992 Pyridine nucleotide-disulphide oxidoreductase J172_01128 PF00107 Zinc-binding dehydrogenase J172_01128 PF08240 Alcohol dehydrogenase GroES-like domain J172_01129 PF00691 OmpA family J172_01129 PF05736 OprF membrane domain J172_01131 PF00849 RNA pseudouridylate synthase J172_01133 PF00155 Aminotransferase class I and II J172_01135 PF00528 Binding-protein-dependent transport system inner membrane component J172_01136 PF00528 Binding-protein-dependent transport system inner membrane component J172_01137 PF12857 TOBE-like domain J172_01137 PF17850 CysA C-terminal regulatory domain J172_01137 PF00005 ABC transporter J172_01139 PF00107 Zinc-binding dehydrogenase J172_01139 PF08240 Alcohol dehydrogenase GroES-like domain J172_01141 PF05506 Domain of unknown function (DUF756) J172_01141 PF04185 Phosphoesterase family J172_01142 PF10459 Peptidase S46 J172_01143 PF10459 Peptidase S46 J172_01144 PF00300 Histidine phosphatase superfamily (branch 1) J172_01145 PF02875 Mur ligase family, glutamate ligase domain J172_01145 PF08245 Mur ligase middle domain J172_01148 PF00156 Phosphoribosyl transferase domain J172_01149 PF04305 Protein of unknown function (DUF455) J172_01153 PF00149 Calcineurin-like phosphoesterase J172_01155 PF01569 PAP2 superfamily J172_01156 PF13439 Glycosyltransferase Family 4 J172_01156 PF00534 Glycosyl transferases group 1 J172_01157 PF02541 Ppx/GppA phosphatase family J172_01158 PF13089 Polyphosphate kinase N-terminal domain J172_01158 PF17941 Polyphosphate kinase C-terminal domain 1 J172_01158 PF13090 Polyphosphate kinase C-terminal domain 2 J172_01158 PF02503 Polyphosphate kinase middle domain J172_01159 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_01159 PF00512 His Kinase A (phospho-acceptor) domain J172_01159 PF11808 Phosphate regulon sensor protein PhoR J172_01159 PF00989 PAS fold J172_01160 PF00072 Response regulator receiver domain J172_01160 PF00486 Transcriptional regulatory protein, C terminal J172_01161 PF13181 Tetratricopeptide repeat J172_01161 PF01435 Peptidase family M48 J172_01162 PF00462 Glutaredoxin J172_01164 PF00180 Isocitrate/isopropylmalate dehydrogenase J172_01171 PF01527 Transposase J172_01194 PF01527 Transposase J172_01195 PF13333 Integrase core domain J172_01195 PF00665 Integrase core domain J172_01195 PF13276 HTH-like domain J172_01198 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_01198 PF00989 PAS fold J172_01198 PF00512 His Kinase A (phospho-acceptor) domain J172_01201 PF05698 Bacterial trigger factor protein (TF) C-terminus J172_01201 PF05697 Bacterial trigger factor protein (TF) J172_01202 PF00574 Clp protease J172_01203 PF06689 ClpX C4-type zinc finger J172_01203 PF10431 C-terminal, D2-small domain, of ClpB protein J172_01203 PF07724 AAA domain (Cdc48 subfamily) J172_01204 PF02190 ATP-dependent protease La (LON) substrate-binding domain J172_01204 PF05362 Lon protease (S16) C-terminal proteolytic domain J172_01204 PF00004 ATPase family associated with various cellular activities (AAA) J172_01205 PF00216 Bacterial DNA-binding protein J172_01211 PF05257 CHAP domain J172_01211 PF01476 LysM domain J172_01212 PF00753 Metallo-beta-lactamase superfamily J172_01212 PF16123 Hydroxyacylglutathione hydrolase C-terminus J172_01214 PF00075 RNase H J172_01215 PF00929 Exonuclease J172_01219 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J172_01221 PF12706 Beta-lactamase superfamily domain J172_01221 PF00753 Metallo-beta-lactamase superfamily J172_01222 PF04055 Radical SAM superfamily J172_01222 PF06463 Molybdenum Cofactor Synthesis C J172_01223 PF01967 MoaC family J172_01224 PF02597 ThiS family J172_01225 PF02391 MoaE protein J172_01228 PF01527 Transposase J172_01235 PF12169 DNA polymerase III subunits gamma and tau domain III J172_01235 PF12170 DNA polymerase III tau subunit V interacting with alpha J172_01235 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding J172_01236 PF02575 YbaB/EbfC DNA-binding family J172_01237 PF02132 RecR protein J172_01237 PF13662 Toprim domain J172_01238 PF01230 HIT domain J172_01240 PF11992 Domain of unknown function (DUF3488) J172_01240 PF13559 Domain of unknown function (DUF4129) J172_01240 PF01841 Transglutaminase-like superfamily J172_01242 PF17863 AAA lid domain J172_01242 PF07726 ATPase family associated with various cellular activities (AAA) J172_01246 PF02545 Maf-like protein J172_01247 PF02620 Large ribosomal RNA subunit accumulation protein YceD J172_01248 PF01783 Ribosomal L32p protein family J172_01249 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J172_01249 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J172_01251 PF00698 Acyl transferase domain J172_01253 PF00550 Phosphopantetheine attachment site J172_01254 PF00109 Beta-ketoacyl synthase, N-terminal domain J172_01254 PF02801 Beta-ketoacyl synthase, C-terminal domain J172_01255 PF04715 Anthranilate synthase component I, N terminal region J172_01255 PF00425 chorismate binding enzyme J172_01256 PF02618 YceG-like family J172_01257 PF09115 DNA polymerase III, delta subunit, C terminal J172_01261 PF00158 Sigma-54 interaction domain J172_01261 PF02954 Bacterial regulatory protein, Fis family J172_01261 PF06506 Propionate catabolism activator J172_01263 PF00285 Citrate synthase, C-terminal domain J172_01264 PF00694 Aconitase C-terminal domain J172_01264 PF00330 Aconitase family (aconitate hydratase) J172_01265 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH J172_01267 PF04303 PrpF protein J172_01268 PF07715 TonB-dependent Receptor Plug Domain J172_01268 PF00593 TonB dependent receptor J172_01270 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain J172_01270 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain J172_01270 PF17962 Bacterial macroglobulin domain 6 J172_01270 PF00207 Alpha-2-macroglobulin family J172_01270 PF07703 Alpha-2-macroglobulin bait region domain J172_01270 PF11974 Bacterial alpha-2-macroglobulin MG3 domain J172_01270 PF01835 MG2 domain J172_01270 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain J172_01273 PF06832 Penicillin-Binding Protein C-terminus Family J172_01273 PF00912 Transglycosylase J172_01273 PF00905 Penicillin binding protein transpeptidase domain J172_01275 PF08534 Redoxin J172_01277 PF01556 DnaJ C terminal domain J172_01277 PF00226 DnaJ domain J172_01279 PF00072 Response regulator receiver domain J172_01281 PF01145 SPFH domain / Band 7 family J172_01281 PF12221 Bacterial membrane protein N terminal J172_01282 PF01145 SPFH domain / Band 7 family J172_01284 PF00709 Adenylosuccinate synthetase J172_01285 PF01433 Peptidase family M1 domain J172_01285 PF11838 ERAP1-like C-terminal domain J172_01288 PF00440 Bacterial regulatory proteins, tetR family J172_01301 PF00300 Histidine phosphatase superfamily (branch 1) J172_01301 PF13456 Reverse transcriptase-like J172_01302 PF01256 Carbohydrate kinase J172_01304 PF00723 Glycosyl hydrolases family 15 J172_01306 PF07971 Glycosyl hydrolase family 92 J172_01306 PF17678 Glycosyl hydrolase family 92 N-terminal domain J172_01310 PF07992 Pyridine nucleotide-disulphide oxidoreductase J172_01314 PF17755 UvrA DNA-binding domain J172_01315 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J172_01315 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J172_01316 PF03450 CO dehydrogenase flavoprotein C-terminal domain J172_01316 PF00941 FAD binding domain in molybdopterin dehydrogenase J172_01317 PF01799 [2Fe-2S] binding domain J172_01317 PF00111 2Fe-2S iron-sulfur cluster binding domain J172_01324 PF00717 Peptidase S24-like J172_01324 PF01726 LexA DNA binding domain J172_01327 PF14579 Helix-hairpin-helix motif J172_01327 PF02811 PHP domain J172_01327 PF07733 Bacterial DNA polymerase III alpha NTPase domain J172_01327 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J172_01328 PF00326 Prolyl oligopeptidase family J172_01330 PF03169 OPT oligopeptide transporter protein J172_01333 PF00326 Prolyl oligopeptidase family J172_01333 PF07676 WD40-like Beta Propeller Repeat J172_01333 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J172_01336 PF02311 AraC-like ligand binding domain J172_01336 PF12833 Helix-turn-helix domain J172_01341 PF06628 Catalase-related immune-responsive J172_01341 PF18011 C-terminal domain found in long catalases J172_01341 PF00199 Catalase J172_01342 PF00248 Aldo/keto reductase family J172_01343 PF00135 Carboxylesterase family J172_01344 PF02347 Glycine cleavage system P-protein J172_01347 PF07690 Major Facilitator Superfamily J172_01350 PF08019 Phosphoethanolamine transferase EptA/EptB J172_01350 PF00884 Sulfatase J172_01353 PF00072 Response regulator receiver domain J172_01353 PF00486 Transcriptional regulatory protein, C terminal J172_01354 PF08521 Two-component sensor kinase N-terminal J172_01354 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_01354 PF00512 His Kinase A (phospho-acceptor) domain J172_01356 PF03776 Septum formation topological specificity factor MinE J172_01357 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J172_01358 PF05209 Septum formation inhibitor MinC, N-terminal domain J172_01358 PF03775 Septum formation inhibitor MinC, C-terminal domain J172_01360 PF07730 Histidine kinase J172_01361 PF00196 Bacterial regulatory proteins, luxR family J172_01361 PF00072 Response regulator receiver domain J172_01364 PF00730 HhH-GPD superfamily base excision DNA repair protein J172_01369 PF02222 ATP-grasp domain J172_01371 PF04377 Arginine-tRNA-protein transferase, C terminus J172_01371 PF04376 Arginine-tRNA-protein transferase, N terminus J172_01377 PF00378 Enoyl-CoA hydratase/isomerase J172_01380 PF17755 UvrA DNA-binding domain J172_01380 PF00005 ABC transporter J172_01380 PF17760 UvrA interaction domain J172_01381 PF00829 Ribosomal prokaryotic L21 protein J172_01382 PF01016 Ribosomal L27 protein J172_01383 PF01926 50S ribosome-binding GTPase J172_01383 PF01018 GTP1/OBG J172_01384 PF01649 Ribosomal protein S20 J172_01385 PF03023 Lipid II flippase MurJ J172_01386 PF01687 Riboflavin kinase J172_01386 PF06574 FAD synthetase J172_01387 PF06827 Zinc finger found in FPG and IleRS J172_01387 PF00133 tRNA synthetases class I (I, L, M and V) J172_01387 PF08264 Anticodon-binding domain of tRNA J172_01388 PF01252 Signal peptidase (SPase) II J172_01389 PF02401 LytB protein J172_01391 PF06481 COX Aromatic Rich Motif J172_01391 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J172_01392 PF00115 Cytochrome C and Quinol oxidase polypeptide I J172_01393 PF00510 Cytochrome c oxidase subunit III J172_01394 PF03626 Prokaryotic Cytochrome C oxidase subunit IV J172_01396 PF18073 Rubredoxin metal binding domain J172_01397 PF05656 Protein of unknown function (DUF805) J172_01399 PF12833 Helix-turn-helix domain J172_01400 PF00183 Hsp90 protein J172_01400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_01402 PF08678 Rsbr N terminal J172_01402 PF01740 STAS domain J172_01403 PF01740 STAS domain J172_01404 PF13581 Histidine kinase-like ATPase domain J172_01406 PF01627 Hpt domain J172_01406 PF17149 Periplasmic sensor domain found in signal transduction proteins J172_01406 PF00512 His Kinase A (phospho-acceptor) domain J172_01406 PF00072 Response regulator receiver domain J172_01406 PF00672 HAMP domain J172_01406 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_01407 PF13188 PAS domain J172_01407 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_01407 PF00512 His Kinase A (phospho-acceptor) domain J172_01407 PF08448 PAS fold J172_01407 PF00072 Response regulator receiver domain J172_01408 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J172_01408 PF04616 Glycosyl hydrolases family 43 J172_01409 PF07715 TonB-dependent Receptor Plug Domain J172_01409 PF00593 TonB dependent receptor J172_01410 PF00085 Thioredoxin J172_01411 PF07237 Protein of unknown function (DUF1428) J172_01412 PF00512 His Kinase A (phospho-acceptor) domain J172_01412 PF13493 Domain of unknown function (DUF4118) J172_01412 PF13492 GAF domain J172_01412 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_01412 PF02702 Osmosensitive K+ channel His kinase sensor domain J172_01413 PF01339 CheB methylesterase J172_01414 PF01739 CheR methyltransferase, SAM binding domain J172_01414 PF03705 CheR methyltransferase, all-alpha domain J172_01415 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J172_01415 PF00072 Response regulator receiver domain J172_01415 PF00512 His Kinase A (phospho-acceptor) domain J172_01415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_01415 PF00672 HAMP domain J172_01415 PF01627 Hpt domain J172_01416 PF00072 Response regulator receiver domain J172_01416 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_01416 PF13426 PAS domain J172_01417 PF00072 Response regulator receiver domain J172_01418 PF00722 Glycosyl hydrolases family 16 J172_01419 PF06964 Alpha-L-arabinofuranosidase C-terminal domain J172_01420 PF01263 Aldose 1-epimerase J172_01421 PF01578 Cytochrome C assembly protein J172_01422 PF02978 Signal peptide binding domain J172_01422 PF02881 SRP54-type protein, helical bundle domain J172_01422 PF00448 SRP54-type protein, GTPase domain J172_01423 PF03060 Nitronate monooxygenase J172_01424 PF01063 Amino-transferase class IV J172_01425 PF00886 Ribosomal protein S16 J172_01426 PF05239 PRC-barrel domain J172_01426 PF01782 RimM N-terminal domain J172_01427 PF01746 tRNA (Guanine-1)-methyltransferase J172_01428 PF01245 Ribosomal protein L19 J172_01429 PF01554 MatE J172_01430 PF01554 MatE J172_01433 PF01479 S4 domain J172_01434 PF00141 Peroxidase J172_01436 PF00488 MutS domain V J172_01436 PF05190 MutS family domain IV J172_01436 PF05192 MutS domain III J172_01436 PF01624 MutS domain I J172_01436 PF05188 MutS domain II J172_01439 PF05593 RHS Repeat J172_01439 PF03527 RHS protein J172_01443 PF16355 Domain of unknown function (DUF4982) J172_01443 PF00703 Glycosyl hydrolases family 2 J172_01443 PF02837 Glycosyl hydrolases family 2, sugar binding domain J172_01443 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J172_01443 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J172_01444 PF07745 Glycosyl hydrolase family 53 J172_01446 PF01381 Helix-turn-helix J172_01446 PF06114 IrrE N-terminal-like domain J172_01446 PF09856 Predicted transcriptional regulator (DUF2083) J172_01447 PF00171 Aldehyde dehydrogenase family J172_01448 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J172_01448 PF02770 Acyl-CoA dehydrogenase, middle domain J172_01448 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J172_01449 PF00378 Enoyl-CoA hydratase/isomerase J172_01450 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J172_01450 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J172_01450 PF00378 Enoyl-CoA hydratase/isomerase J172_01451 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J172_01451 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J172_01452 PF01545 Cation efflux family J172_01453 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J172_01453 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J172_01453 PF00378 Enoyl-CoA hydratase/isomerase J172_01454 PF04542 Sigma-70 region 2 J172_01454 PF08281 Sigma-70, region 4 J172_01456 PF13180 PDZ domain J172_01457 PF00009 Elongation factor Tu GTP binding domain J172_01457 PF00679 Elongation factor G C-terminus J172_01457 PF06421 GTP-binding protein LepA C-terminus J172_01457 PF03144 Elongation factor Tu domain 2 J172_01458 PF10502 Signal peptidase, peptidase S26 J172_01460 PF14622 Ribonuclease-III-like J172_01460 PF00035 Double-stranded RNA binding motif J172_01461 PF01926 50S ribosome-binding GTPase J172_01461 PF07650 KH domain J172_01462 PF11967 Recombination protein O N terminal J172_01462 PF02565 Recombination protein O C terminal J172_01464 PF05958 tRNA (Uracil-5-)-methyltransferase J172_01466 PF01323 DSBA-like thioredoxin domain J172_01467 PF01593 Flavin containing amine oxidoreductase J172_01468 PF04244 Deoxyribodipyrimidine photo-lyase-related protein J172_01469 PF00933 Glycosyl hydrolase family 3 N terminal domain J172_01471 PF01048 Phosphorylase superfamily J172_01472 PF00313 'Cold-shock' DNA-binding domain J172_01473 PF01494 FAD binding domain J172_01475 PF00270 DEAD/DEAH box helicase J172_01475 PF08494 DEAD/H associated J172_01475 PF00271 Helicase conserved C-terminal domain J172_01476 PF01068 ATP dependent DNA ligase domain J172_01476 PF04675 DNA ligase N terminus J172_01476 PF04679 ATP dependent DNA ligase C terminal region J172_01478 PF04675 DNA ligase N terminus J172_01478 PF04679 ATP dependent DNA ligase C terminal region J172_01478 PF01068 ATP dependent DNA ligase domain J172_01481 PF00990 Diguanylate cyclase, GGDEF domain J172_01481 PF00072 Response regulator receiver domain J172_01484 PF00108 Thiolase, N-terminal domain J172_01484 PF02803 Thiolase, C-terminal domain J172_01485 PF03797 Autotransporter beta-domain J172_01485 PF12951 Passenger-associated-transport-repeat J172_01485 PF00082 Subtilase family J172_01486 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J172_01486 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain J172_01488 PF01863 Protein of unknown function DUF45 J172_01489 PF07043 Protein of unknown function (DUF1328) J172_01491 PF01258 Prokaryotic dksA/traR C4-type zinc finger J172_01495 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J172_01497 PF03831 PhnA domain J172_01497 PF08274 PhnA Zinc-Ribbon J172_01498 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J172_01499 PF07690 Major Facilitator Superfamily J172_01506 PF09924 Uncharacterised conserved protein (DUF2156) J172_01506 PF03706 Lysylphosphatidylglycerol synthase TM region J172_01509 PF01042 Endoribonuclease L-PSP J172_01518 PF04542 Sigma-70 region 2 J172_01518 PF04545 Sigma-70, region 4 J172_01521 PF04060 Putative Fe-S cluster J172_01523 PF01588 Putative tRNA binding domain J172_01523 PF09334 tRNA synthetases class I (M) J172_01526 PF13732 Domain of unknown function (DUF4162) J172_01526 PF00005 ABC transporter J172_01527 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J172_01528 PF00324 Amino acid permease J172_01529 PF02574 Homocysteine S-methyltransferase J172_01531 PF02592 Putative vitamin uptake transporter J172_01535 PF03551 Transcriptional regulator PadR-like family J172_01542 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J172_01543 PF01336 OB-fold nucleic acid binding domain J172_01543 PF02811 PHP domain J172_01543 PF14579 Helix-hairpin-helix motif J172_01543 PF07733 Bacterial DNA polymerase III alpha NTPase domain J172_01543 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J172_01544 PF01351 Ribonuclease HII J172_01545 PF02684 Lipid-A-disaccharide synthetase J172_01546 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 J172_01546 PF00132 Bacterial transferase hexapeptide (six repeats) J172_01547 PF07977 FabA-like domain J172_01548 PF00132 Bacterial transferase hexapeptide (six repeats) J172_01548 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD J172_01550 PF07244 Surface antigen variable number repeat J172_01550 PF01103 Surface antigen J172_01551 PF02163 Peptidase family M50 J172_01551 PF17820 PDZ domain J172_01552 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J172_01552 PF13288 DXP reductoisomerase C-terminal domain J172_01552 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J172_01554 PF01255 Putative undecaprenyl diphosphate synthase J172_01555 PF01765 Ribosome recycling factor J172_01556 PF00696 Amino acid kinase family J172_01557 PF00990 Diguanylate cyclase, GGDEF domain J172_01557 PF00072 Response regulator receiver domain J172_01558 PF00889 Elongation factor TS J172_01559 PF00318 Ribosomal protein S2 J172_01566 PF00557 Metallopeptidase family M24 J172_01567 PF01909 Nucleotidyltransferase domain J172_01567 PF01966 HD domain J172_01567 PF08335 GlnD PII-uridylyltransferase J172_01568 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal J172_01568 PF14602 Hexapeptide repeat of succinyl-transferase J172_01568 PF00132 Bacterial transferase hexapeptide (six repeats) J172_01569 PF03960 ArsC family J172_01570 PF01546 Peptidase family M20/M25/M40 J172_01570 PF07687 Peptidase dimerisation domain J172_01571 PF00733 Asparagine synthase J172_01571 PF13537 Glutamine amidotransferase domain J172_01573 PF07715 TonB-dependent Receptor Plug Domain J172_01573 PF00593 TonB dependent receptor J172_01575 PF01804 Penicillin amidase J172_01576 PF00210 Ferritin-like domain J172_01577 PF05724 Thiopurine S-methyltransferase (TPMT) J172_01579 PF03989 DNA gyrase C-terminal domain, beta-propeller J172_01579 PF00521 DNA gyrase/topoisomerase IV, subunit A J172_01582 PF02321 Outer membrane efflux protein J172_01583 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J172_01583 PF00529 HlyD membrane-fusion protein of T1SS J172_01584 PF07690 Major Facilitator Superfamily J172_01586 PF00933 Glycosyl hydrolase family 3 N terminal domain J172_01586 PF14310 Fibronectin type III-like domain J172_01586 PF01915 Glycosyl hydrolase family 3 C-terminal domain J172_01588 PF00854 POT family J172_01593 PF12802 MarR family J172_01594 PF01432 Peptidase family M3 J172_01595 PF00255 Glutathione peroxidase J172_01596 PF00175 Oxidoreductase NAD-binding domain J172_01596 PF00970 Oxidoreductase FAD-binding domain J172_01597 PF00005 ABC transporter J172_01598 PF05683 Fumarase C-terminus J172_01598 PF05681 Fumarate hydratase (Fumerase) J172_01600 PF00484 Carbonic anhydrase J172_01601 PF02253 Phospholipase A1 J172_01603 PF00313 'Cold-shock' DNA-binding domain J172_01606 PF00899 ThiF family J172_01607 PF01026 TatD related DNase J172_01610 PF02770 Acyl-CoA dehydrogenase, middle domain J172_01610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J172_01610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J172_01612 PF00043 Glutathione S-transferase, C-terminal domain J172_01612 PF02798 Glutathione S-transferase, N-terminal domain J172_01613 PF13537 Glutamine amidotransferase domain J172_01613 PF00733 Asparagine synthase J172_01614 PF03358 NADPH-dependent FMN reductase J172_01615 PF03796 DnaB-like helicase C terminal domain J172_01615 PF00772 DnaB-like helicase N terminal domain J172_01616 PF00875 DNA photolyase J172_01616 PF03441 FAD binding domain of DNA photolyase J172_01617 PF00691 OmpA family J172_01617 PF05736 OprF membrane domain J172_01619 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_01619 PF03466 LysR substrate binding domain J172_01622 PF00529 HlyD membrane-fusion protein of T1SS J172_01622 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J172_01623 PF00873 AcrB/AcrD/AcrF family J172_01624 PF00106 short chain dehydrogenase J172_01625 PF02321 Outer membrane efflux protein J172_01626 PF08448 PAS fold J172_01626 PF00990 Diguanylate cyclase, GGDEF domain J172_01628 PF00990 Diguanylate cyclase, GGDEF domain J172_01645 PF01527 Transposase J172_01654 PF00082 Subtilase family J172_01655 PF01668 SmpB protein J172_01656 PF03364 Polyketide cyclase / dehydrase and lipid transport J172_01657 PF03658 RnfH family Ubiquitin J172_01658 PF04355 SmpA / OmlA family J172_01659 PF01475 Ferric uptake regulator family J172_01660 PF02463 RecF/RecN/SMC N terminal domain J172_01661 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding J172_01661 PF01628 HrcA protein C terminal domain J172_01662 PF01025 GrpE J172_01663 PF00012 Hsp70 protein J172_01664 PF01556 DnaJ C terminal domain J172_01664 PF00226 DnaJ domain J172_01664 PF00684 DnaJ central domain J172_01666 PF08543 Phosphomethylpyrimidine kinase J172_01671 PF00664 ABC transporter transmembrane region J172_01671 PF00005 ABC transporter J172_01671 PF03412 Peptidase C39 family J172_01672 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_01672 PF03466 LysR substrate binding domain J172_01673 PF00005 ABC transporter J172_01673 PF00664 ABC transporter transmembrane region J172_01674 PF01205 Uncharacterized protein family UPF0029 J172_01675 PF03641 Possible lysine decarboxylase J172_01676 PF07992 Pyridine nucleotide-disulphide oxidoreductase J172_01676 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J172_01677 PF00364 Biotin-requiring enzyme J172_01677 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J172_01677 PF02817 e3 binding domain J172_01678 PF02779 Transketolase, pyrimidine binding domain J172_01678 PF00676 Dehydrogenase E1 component J172_01678 PF16078 2-oxoglutarate dehydrogenase N-terminus J172_01678 PF16870 2-oxoglutarate dehydrogenase C-terminal J172_01680 PF08007 Cupin superfamily protein J172_01682 PF08328 Adenylosuccinate lyase C-terminal J172_01682 PF00206 Lyase J172_01684 PF01595 Cyclin M transmembrane N-terminal domain J172_01684 PF00571 CBS domain J172_01684 PF03471 Transporter associated domain J172_01685 PF00206 Lyase J172_01685 PF10415 Fumarase C C-terminus J172_01690 PF00005 ABC transporter J172_01691 PF00392 Bacterial regulatory proteins, gntR family J172_01693 PF00255 Glutathione peroxidase J172_01694 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J172_01694 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J172_01695 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J172_01695 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J172_01695 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J172_01696 PF04102 SlyX J172_01699 PF00356 Bacterial regulatory proteins, lacI family J172_01700 PF07690 Major Facilitator Superfamily J172_01701 PF00294 pfkB family carbohydrate kinase J172_01703 PF00809 Pterin binding enzyme J172_01703 PF02574 Homocysteine S-methyltransferase J172_01703 PF02310 B12 binding domain J172_01703 PF02607 B12 binding domain J172_01703 PF02965 Vitamin B12 dependent methionine synthase, activation domain J172_01704 PF00809 Pterin binding enzyme J172_01704 PF02574 Homocysteine S-methyltransferase J172_01705 PF01209 ubiE/COQ5 methyltransferase family J172_01706 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J172_01706 PF02770 Acyl-CoA dehydrogenase, middle domain J172_01706 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J172_01709 PF00575 S1 RNA binding domain J172_01709 PF08206 Ribonuclease B OB domain J172_01709 PF08461 Ribonuclease R winged-helix domain J172_01709 PF17876 Cold shock domain J172_01709 PF00773 RNB domain J172_01711 PF08032 RNA 2'-O ribose methyltransferase substrate binding J172_01711 PF00588 SpoU rRNA Methylase family J172_01712 PF00990 Diguanylate cyclase, GGDEF domain J172_01712 PF07694 5TMR of 5TMR-LYT J172_01713 PF00929 Exonuclease J172_01715 PF01895 PhoU domain J172_01716 PF00005 ABC transporter J172_01717 PF00528 Binding-protein-dependent transport system inner membrane component J172_01718 PF00528 Binding-protein-dependent transport system inner membrane component J172_01719 PF12849 PBP superfamily domain J172_01720 PF12849 PBP superfamily domain J172_01723 PF00484 Carbonic anhydrase J172_01724 PF01740 STAS domain J172_01724 PF00916 Sulfate permease family J172_01725 PF00730 HhH-GPD superfamily base excision DNA repair protein J172_01725 PF00633 Helix-hairpin-helix motif J172_01725 PF10576 Iron-sulfur binding domain of endonuclease III J172_01727 PF00378 Enoyl-CoA hydratase/isomerase J172_01728 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J172_01728 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J172_01729 PF00293 NUDIX domain J172_01730 PF00581 Rhodanese-like domain J172_01737 PF01170 Putative RNA methylase family UPF0020 J172_01737 PF02926 THUMP domain J172_01737 PF10672 S-adenosylmethionine-dependent methyltransferase J172_01738 PF01513 ATP-NAD kinase J172_01742 PF00929 Exonuclease J172_01742 PF08411 Exonuclease C-terminal J172_01743 PF01494 FAD binding domain J172_01744 PF00266 Aminotransferase class-V J172_01746 PF06052 3-hydroxyanthranilic acid dioxygenase J172_01747 PF00484 Carbonic anhydrase J172_01756 PF00072 Response regulator receiver domain J172_01756 PF00196 Bacterial regulatory proteins, luxR family J172_01759 PF04299 Putative FMN-binding domain J172_01763 PF01336 OB-fold nucleic acid binding domain J172_01763 PF00152 tRNA synthetases class II (D, K and N) J172_01764 PF01521 Iron-sulphur cluster biosynthesis J172_01765 PF01250 Ribosomal protein S6 J172_01766 PF01084 Ribosomal protein S18 J172_01767 PF01281 Ribosomal protein L9, N-terminal domain J172_01767 PF03948 Ribosomal protein L9, C-terminal domain J172_01768 PF02463 RecF/RecN/SMC N terminal domain J172_01769 PF04354 ZipA, C-terminal FtsZ-binding domain J172_01771 PF00155 Aminotransferase class I and II J172_01772 PF03120 NAD-dependent DNA ligase OB-fold domain J172_01772 PF00533 BRCA1 C Terminus (BRCT) domain J172_01772 PF01653 NAD-dependent DNA ligase adenylation domain J172_01772 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J172_01772 PF12826 Helix-hairpin-helix motif J172_01773 PF00152 tRNA synthetases class II (D, K and N) J172_01775 PF01008 Initiation factor 2 subunit family J172_01776 PF03989 DNA gyrase C-terminal domain, beta-propeller J172_01776 PF00521 DNA gyrase/topoisomerase IV, subunit A J172_01777 PF13360 PQQ-like domain J172_01779 PF17391 Urocanase N-terminal domain J172_01779 PF17392 Urocanase C-terminal domain J172_01779 PF01175 Urocanase Rossmann-like domain J172_01781 PF00221 Aromatic amino acid lyase J172_01782 PF07969 Amidohydrolase family J172_01784 PF07702 UTRA domain J172_01784 PF00392 Bacterial regulatory proteins, gntR family J172_01790 PF01794 Ferric reductase like transmembrane component J172_01791 PF00174 Oxidoreductase molybdopterin binding domain J172_01792 PF00266 Aminotransferase class-V J172_01793 PF01842 ACT domain J172_01793 PF01817 Chorismate mutase type II J172_01793 PF00800 Prephenate dehydratase J172_01794 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J172_01796 PF03544 Gram-negative bacterial TonB protein C-terminal J172_01797 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J172_01797 PF02403 Seryl-tRNA synthetase N-terminal domain J172_01798 PF02525 Flavodoxin-like fold J172_01799 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_01799 PF03466 LysR substrate binding domain J172_01804 PF01527 Transposase J172_01805 PF13276 HTH-like domain J172_01805 PF13333 Integrase core domain J172_01805 PF00665 Integrase core domain J172_01810 PF00672 HAMP domain J172_01810 PF02203 Tar ligand binding domain homologue J172_01810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_01813 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_01813 PF13188 PAS domain J172_01813 PF08448 PAS fold J172_01813 PF00072 Response regulator receiver domain J172_01813 PF00512 His Kinase A (phospho-acceptor) domain J172_01814 PF00072 Response regulator receiver domain J172_01814 PF00486 Transcriptional regulatory protein, C terminal J172_01815 PF06745 KaiC J172_01816 PF00072 Response regulator receiver domain J172_01816 PF13426 PAS domain J172_01816 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_01818 PF03918 Cytochrome C biogenesis protein J172_01819 PF08534 Redoxin J172_01820 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J172_01820 PF01578 Cytochrome C assembly protein J172_01821 PF03100 CcmE J172_01823 PF01578 Cytochrome C assembly protein J172_01824 PF00082 Subtilase family J172_01826 PF08281 Sigma-70, region 4 J172_01826 PF04542 Sigma-70 region 2 J172_01829 PF00034 Cytochrome c J172_01832 PF05523 WxcM-like, C-terminal J172_01836 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J172_01837 PF01943 Polysaccharide biosynthesis protein J172_01838 PF00535 Glycosyl transferase family 2 J172_01841 PF08241 Methyltransferase domain J172_01845 PF00534 Glycosyl transferases group 1 J172_01845 PF13579 Glycosyl transferase 4-like domain J172_01848 PF00005 ABC transporter J172_01849 PF00664 ABC transporter transmembrane region J172_01849 PF00005 ABC transporter J172_01850 PF07690 Major Facilitator Superfamily J172_01851 PF00296 Luciferase-like monooxygenase J172_01854 PF01595 Cyclin M transmembrane N-terminal domain J172_01854 PF03471 Transporter associated domain J172_01854 PF00571 CBS domain J172_01856 PF01384 Phosphate transporter family J172_01859 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_01859 PF00986 DNA gyrase B subunit, carboxyl terminus J172_01859 PF01751 Toprim domain J172_01859 PF00204 DNA gyrase B J172_01861 PF06418 CTP synthase N-terminus J172_01861 PF00117 Glutamine amidotransferase class-I J172_01862 PF00793 DAHP synthetase I family J172_01864 PF03952 Enolase, N-terminal domain J172_01864 PF00113 Enolase, C-terminal TIM barrel domain J172_01865 PF04977 Septum formation initiator J172_01866 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J172_01867 PF02542 YgbB family J172_01868 PF01142 tRNA pseudouridine synthase D (TruD) J172_01869 PF01713 Smr domain J172_01870 PF01975 Survival protein SurE J172_01872 PF09335 SNARE associated Golgi protein J172_01873 PF01476 LysM domain J172_01873 PF01551 Peptidase family M23 J172_01875 PF04430 Protein of unknown function (DUF498/DUF598) J172_01876 PF01985 CRS1 / YhbY (CRM) domain J172_01877 PF01728 FtsJ-like methyltransferase J172_01878 PF17862 AAA+ lid domain J172_01878 PF00004 ATPase family associated with various cellular activities (AAA) J172_01878 PF01434 Peptidase family M41 J172_01878 PF06480 FtsH Extracellular J172_01879 PF00809 Pterin binding enzyme J172_01881 PF17209 Hfq protein J172_01882 PF16360 GTP-binding GTPase Middle Region J172_01882 PF01926 50S ribosome-binding GTPase J172_01882 PF13167 GTP-binding GTPase N-terminal J172_01883 PF02464 Competence-damaged protein J172_01884 PF03109 ABC1 family J172_01885 PF01726 LexA DNA binding domain J172_01885 PF00717 Peptidase S24-like J172_01886 PF00154 recA bacterial DNA recombination protein J172_01887 PF02631 RecX family J172_01888 PF01411 tRNA synthetases class II (A) J172_01888 PF02272 DHHA1 domain J172_01888 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J172_01889 PF02599 Global regulator protein family J172_01891 PF08447 PAS fold J172_01891 PF13426 PAS domain J172_01891 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_01892 PF02678 Pirin J172_01892 PF17954 Quercetinase C-terminal cupin domain J172_01893 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_01893 PF03466 LysR substrate binding domain J172_01898 PF02581 Thiamine monophosphate synthase J172_01898 PF08543 Phosphomethylpyrimidine kinase J172_01901 PF13638 PIN domain J172_01901 PF02562 PhoH-like protein J172_01902 PF00578 AhpC/TSA family J172_01905 PF00701 Dihydrodipicolinate synthetase family J172_01907 PF11953 Domain of unknown function (DUF3470) J172_01907 PF00037 4Fe-4S binding domain J172_01908 PF05035 2-keto-3-deoxy-galactonokinase J172_01909 PF08450 SMP-30/Gluconolactonase/LRE-like region J172_01910 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J172_01910 PF13378 Enolase C-terminal domain-like J172_01911 PF01081 KDPG and KHG aldolase J172_01913 PF03466 LysR substrate binding domain J172_01913 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_01916 PF00942 Cellulose binding domain J172_01916 PF03442 Carbohydrate binding domain X2 J172_01919 PF01055 Glycosyl hydrolases family 31 J172_01919 PF17137 Domain of unknown function (DUF5110) J172_01919 PF16338 Domain of unknown function (DUF4968) J172_01921 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J172_01921 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J172_01923 PF00083 Sugar (and other) transporter J172_01926 PF01520 N-acetylmuramoyl-L-alanine amidase J172_01927 PF02649 Type I GTP cyclohydrolase folE2 J172_01931 PF12627 Probable RNA and SrmB- binding site of polymerase A J172_01931 PF12626 Polymerase A arginine-rich C-terminus J172_01931 PF01743 Poly A polymerase head domain J172_01932 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J172_01933 PF02548 Ketopantoate hydroxymethyltransferase J172_01934 PF02569 Pantoate-beta-alanine ligase J172_01935 PF02261 Aspartate decarboxylase J172_01936 PF00342 Phosphoglucose isomerase J172_01940 PF01915 Glycosyl hydrolase family 3 C-terminal domain J172_01940 PF00933 Glycosyl hydrolase family 3 N terminal domain J172_01940 PF14310 Fibronectin type III-like domain J172_01941 PF00474 Sodium:solute symporter family J172_01942 PF00563 EAL domain J172_01942 PF01590 GAF domain J172_01942 PF00990 Diguanylate cyclase, GGDEF domain J172_01942 PF00360 Phytochrome region J172_01943 PF02013 Cellulose or protein binding domain J172_01943 PF00150 Cellulase (glycosyl hydrolase family 5) J172_01944 PF00072 Response regulator receiver domain J172_01946 PF04551 GcpE protein J172_01947 PF01569 PAP2 superfamily J172_01948 PF07690 Major Facilitator Superfamily J172_01949 PF01177 Asp/Glu/Hydantoin racemase J172_01950 PF00892 EamA-like transporter family J172_01951 PF01565 FAD binding domain J172_01951 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J172_01952 PF01180 Dihydroorotate dehydrogenase J172_01955 PF00171 Aldehyde dehydrogenase family J172_01958 PF00535 Glycosyl transferase family 2 J172_01959 PF14883 Hypothetical glycosyl hydrolase family 13 J172_01959 PF01522 Polysaccharide deacetylase J172_01961 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB J172_01961 PF17287 POTRA domain J172_01961 PF08479 POTRA domain, ShlB-type J172_01962 PF13332 Hemagglutinin repeat J172_01962 PF04829 Pre-toxin domain with VENN motif J172_01962 PF05594 Haemagluttinin repeat J172_01963 PF05594 Haemagluttinin repeat J172_01963 PF13332 Hemagglutinin repeat J172_01963 PF04829 Pre-toxin domain with VENN motif J172_01965 PF13018 Extended Signal Peptide of Type V secretion system J172_01965 PF13332 Hemagglutinin repeat J172_01965 PF05860 haemagglutination activity domain J172_01965 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain J172_01965 PF05594 Haemagluttinin repeat J172_01967 PF03447 Homoserine dehydrogenase, NAD binding domain J172_01967 PF00742 Homoserine dehydrogenase J172_01967 PF13840 ACT domain J172_01967 PF01842 ACT domain J172_01967 PF00696 Amino acid kinase family J172_01968 PF08544 GHMP kinases C terminal J172_01968 PF00288 GHMP kinases N terminal domain J172_01970 PF00291 Pyridoxal-phosphate dependent enzyme J172_01970 PF14821 Threonine synthase N terminus J172_01972 PF13545 Crp-like helix-turn-helix domain J172_01972 PF00027 Cyclic nucleotide-binding domain J172_01973 PF13393 Histidyl-tRNA synthetase J172_01973 PF03129 Anticodon binding domain J172_01975 PF08029 HisG, C-terminal domain J172_01975 PF01634 ATP phosphoribosyltransferase J172_01976 PF00815 Histidinol dehydrogenase J172_01977 PF00155 Aminotransferase class I and II J172_01978 PF00475 Imidazoleglycerol-phosphate dehydratase J172_01979 PF00117 Glutamine amidotransferase class-I J172_01980 PF00977 Histidine biosynthesis protein J172_01981 PF00977 Histidine biosynthesis protein J172_01982 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J172_01982 PF01502 Phosphoribosyl-AMP cyclohydrolase J172_01986 PF03079 ARD/ARD' family J172_01987 PF00596 Class II Aldolase and Adducin N-terminal domain J172_01988 PF13520 Amino acid permease J172_01989 PF13520 Amino acid permease J172_01991 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J172_01991 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J172_01991 PF01842 ACT domain J172_01992 PF02913 FAD linked oxidases, C-terminal domain J172_01992 PF01565 FAD binding domain J172_01996 PF09285 Elongation factor P, C-terminal J172_01996 PF08207 Elongation factor P (EF-P) KOW-like domain J172_01996 PF01132 Elongation factor P (EF-P) OB domain J172_01997 PF00106 short chain dehydrogenase J172_01998 PF00682 HMGL-like J172_02000 PF00378 Enoyl-CoA hydratase/isomerase J172_02002 PF07664 Ferrous iron transport protein B C terminus J172_02002 PF02421 Ferrous iron transport protein B J172_02002 PF07670 Nucleoside recognition J172_02005 PF00155 Aminotransferase class I and II J172_02006 PF03475 3-alpha domain J172_02006 PF03473 MOSC domain J172_02007 PF01113 Dihydrodipicolinate reductase, N-terminus J172_02007 PF05173 Dihydrodipicolinate reductase, C-terminus J172_02008 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J172_02008 PF00117 Glutamine amidotransferase class-I J172_02010 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J172_02010 PF02142 MGS-like domain J172_02010 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J172_02011 PF01272 Transcription elongation factor, GreA/GreB, C-term J172_02011 PF03449 Transcription elongation factor, N-terminal J172_02013 PF01368 DHH family J172_02013 PF02272 DHHA1 domain J172_02013 PF17768 RecJ OB domain J172_02021 PF00072 Response regulator receiver domain J172_02021 PF04397 LytTr DNA-binding domain J172_02022 PF00472 RF-1 domain J172_02022 PF03462 PCRF domain J172_02023 PF01336 OB-fold nucleic acid binding domain J172_02023 PF00152 tRNA synthetases class II (D, K and N) J172_02024 PF00072 Response regulator receiver domain J172_02025 PF00072 Response regulator receiver domain J172_02025 PF01627 Hpt domain J172_02025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_02025 PF00512 His Kinase A (phospho-acceptor) domain J172_02026 PF00378 Enoyl-CoA hydratase/isomerase J172_02027 PF00501 AMP-binding enzyme J172_02027 PF13193 AMP-binding enzyme C-terminal domain J172_02029 PF00694 Aconitase C-terminal domain J172_02029 PF00330 Aconitase family (aconitate hydratase) J172_02032 PF00330 Aconitase family (aconitate hydratase) J172_02032 PF11791 Aconitate B N-terminal domain J172_02032 PF06434 Aconitate hydratase 2 N-terminus J172_02033 PF00561 alpha/beta hydrolase fold J172_02034 PF00563 EAL domain J172_02034 PF03707 Bacterial signalling protein N terminal repeat J172_02034 PF00990 Diguanylate cyclase, GGDEF domain J172_02035 PF00072 Response regulator receiver domain J172_02035 PF01339 CheB methylesterase J172_02036 PF03975 CheD chemotactic sensory transduction J172_02037 PF01739 CheR methyltransferase, SAM binding domain J172_02037 PF03705 CheR methyltransferase, all-alpha domain J172_02038 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_02038 PF00672 HAMP domain J172_02038 PF02203 Tar ligand binding domain homologue J172_02039 PF00672 HAMP domain J172_02039 PF02203 Tar ligand binding domain homologue J172_02039 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_02040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_02040 PF00672 HAMP domain J172_02040 PF02203 Tar ligand binding domain homologue J172_02041 PF00672 HAMP domain J172_02041 PF02203 Tar ligand binding domain homologue J172_02041 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_02042 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_02042 PF02203 Tar ligand binding domain homologue J172_02042 PF00672 HAMP domain J172_02043 PF00672 HAMP domain J172_02043 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_02044 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_02044 PF00672 HAMP domain J172_02044 PF02203 Tar ligand binding domain homologue J172_02046 PF00672 HAMP domain J172_02046 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_02046 PF02203 Tar ligand binding domain homologue J172_02047 PF00672 HAMP domain J172_02047 PF17200 Single Cache domain 2 J172_02047 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_02047 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_02047 PF00672 HAMP domain J172_02047 PF17200 Single Cache domain 2 J172_02049 PF00672 HAMP domain J172_02049 PF02203 Tar ligand binding domain homologue J172_02049 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_02050 PF01627 Hpt domain J172_02050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_02050 PF02895 Signal transducing histidine kinase, homodimeric domain J172_02050 PF09078 CheY binding J172_02050 PF01584 CheW-like domain J172_02051 PF00072 Response regulator receiver domain J172_02053 PF01584 CheW-like domain J172_02054 PF13614 AAA domain J172_02055 PF13677 Membrane MotB of proton-channel complex MotA/MotB J172_02055 PF00691 OmpA family J172_02056 PF01618 MotA/TolQ/ExbB proton channel family J172_02059 PF03793 PASTA domain J172_02059 PF00069 Protein kinase domain J172_02069 PF01527 Transposase J172_02075 PF04055 Radical SAM superfamily J172_02075 PF13186 Iron-sulfur cluster-binding domain J172_02078 PF01584 CheW-like domain J172_02078 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_02078 PF01627 Hpt domain J172_02078 PF07194 P2 response regulator binding domain J172_02078 PF02895 Signal transducing histidine kinase, homodimeric domain J172_02079 PF04344 Chemotaxis phosphatase, CheZ J172_02080 PF00072 Response regulator receiver domain J172_02081 PF04542 Sigma-70 region 2 J172_02081 PF04545 Sigma-70, region 4 J172_02081 PF04539 Sigma-70 region 3 J172_02082 PF10609 NUBPL iron-transfer P-loop NTPase J172_02083 PF00448 SRP54-type protein, GTPase domain J172_02084 PF00771 FHIPEP family J172_02085 PF01312 FlhB HrpN YscU SpaS Family J172_02086 PF03707 Bacterial signalling protein N terminal repeat J172_02086 PF00990 Diguanylate cyclase, GGDEF domain J172_02086 PF00563 EAL domain J172_02087 PF00563 EAL domain J172_02087 PF00990 Diguanylate cyclase, GGDEF domain J172_02087 PF03707 Bacterial signalling protein N terminal repeat J172_02087 PF13188 PAS domain J172_02088 PF03707 Bacterial signalling protein N terminal repeat J172_02088 PF13188 PAS domain J172_02088 PF00563 EAL domain J172_02088 PF00990 Diguanylate cyclase, GGDEF domain J172_02089 PF01311 Bacterial export proteins, family 1 J172_02090 PF01313 Bacterial export proteins, family 3 J172_02092 PF00813 FliP family J172_02093 PF04347 Flagellar biosynthesis protein, FliO J172_02094 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J172_02095 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term J172_02095 PF02154 Flagellar motor switch protein FliM J172_02099 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J172_02099 PF18269 T3SS EscN ATPase C-terminal domain J172_02101 PF14842 FliG N-terminal domain J172_02101 PF01706 FliG C-terminal domain J172_02101 PF14841 FliG middle domain J172_02102 PF01514 Secretory protein of YscJ/FliF family J172_02102 PF08345 Flagellar M-ring protein C-terminal J172_02103 PF02049 Flagellar hook-basal body complex protein FliE J172_02104 PF00535 Glycosyl transferase family 2 J172_02104 PF00534 Glycosyl transferases group 1 J172_02112 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J172_02112 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J172_02114 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J172_02115 PF00072 Response regulator receiver domain J172_02115 PF02954 Bacterial regulatory protein, Fis family J172_02115 PF00158 Sigma-54 interaction domain J172_02116 PF00072 Response regulator receiver domain J172_02116 PF01339 CheB methylesterase J172_02117 PF00309 Sigma-54 factor, Activator interacting domain (AID) J172_02117 PF04963 Sigma-54 factor, core binding domain J172_02117 PF04552 Sigma-54, DNA binding domain J172_02118 PF00196 Bacterial regulatory proteins, luxR family J172_02118 PF00072 Response regulator receiver domain J172_02121 PF02561 Flagellar protein FliS J172_02122 PF07196 Flagellin hook IN motif J172_02122 PF02465 Flagellar hook-associated protein 2 N-terminus J172_02122 PF07195 Flagellar hook-associated protein 2 C-terminus J172_02123 PF00669 Bacterial flagellin N-terminal helical region J172_02123 PF00700 Bacterial flagellin C-terminal helical region J172_02124 PF00669 Bacterial flagellin N-terminal helical region J172_02124 PF00700 Bacterial flagellin C-terminal helical region J172_02125 PF07196 Flagellin hook IN motif J172_02125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J172_02126 PF10135 Rod binding protein J172_02126 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase J172_02127 PF02119 Flagellar P-ring protein J172_02128 PF02107 Flagellar L-ring protein J172_02129 PF00460 Flagella basal body rod protein J172_02129 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J172_02130 PF00460 Flagella basal body rod protein J172_02130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J172_02131 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J172_02131 PF00460 Flagella basal body rod protein J172_02131 PF07559 Flagellar basal body protein FlaE J172_02132 PF03963 Flagellar hook capping protein - N-terminal region J172_02133 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J172_02133 PF00460 Flagella basal body rod protein J172_02135 PF00072 Response regulator receiver domain J172_02135 PF01584 CheW-like domain J172_02139 PF13188 PAS domain J172_02139 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_02139 PF00512 His Kinase A (phospho-acceptor) domain J172_02139 PF00989 PAS fold J172_02139 PF13426 PAS domain J172_02140 PF00563 EAL domain J172_02140 PF00990 Diguanylate cyclase, GGDEF domain J172_02140 PF03707 Bacterial signalling protein N terminal repeat J172_02141 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_02141 PF07730 Histidine kinase J172_02142 PF03707 Bacterial signalling protein N terminal repeat J172_02142 PF00563 EAL domain J172_02142 PF00990 Diguanylate cyclase, GGDEF domain J172_02144 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_02144 PF00672 HAMP domain J172_02144 PF12729 Four helix bundle sensory module for signal transduction J172_02145 PF04356 Protein of unknown function (DUF489) J172_02147 PF00293 NUDIX domain J172_02148 PF02617 ATP-dependent Clp protease adaptor protein ClpS J172_02149 PF07724 AAA domain (Cdc48 subfamily) J172_02149 PF10431 C-terminal, D2-small domain, of ClpB protein J172_02149 PF02861 Clp amino terminal domain, pathogenicity island component J172_02149 PF00004 ATPase family associated with various cellular activities (AAA) J172_02149 PF17871 AAA lid domain J172_02150 PF01176 Translation initiation factor 1A / IF-1 J172_02151 PF03588 Leucyl/phenylalanyl-tRNA protein transferase J172_02153 PF07992 Pyridine nucleotide-disulphide oxidoreductase J172_02154 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J172_02154 PF17854 FtsK alpha domain J172_02154 PF09397 Ftsk gamma domain J172_02154 PF01580 FtsK/SpoIIIE family J172_02156 PF03548 Outer membrane lipoprotein carrier protein LolA J172_02158 PF12002 MgsA AAA+ ATPase C terminal J172_02158 PF00004 ATPase family associated with various cellular activities (AAA) J172_02158 PF16193 AAA C-terminal domain J172_02160 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J172_02162 PF02803 Thiolase, C-terminal domain J172_02162 PF00108 Thiolase, N-terminal domain J172_02163 PF00378 Enoyl-CoA hydratase/isomerase J172_02163 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J172_02163 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J172_02165 PF00334 Nucleoside diphosphate kinase J172_02166 PF04055 Radical SAM superfamily J172_02168 PF13464 Domain of unknown function (DUF4115) J172_02170 PF13360 PQQ-like domain J172_02170 PF01011 PQQ enzyme repeat J172_02171 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J172_02171 PF01926 50S ribosome-binding GTPase J172_02172 PF03454 MoeA C-terminal region (domain IV) J172_02172 PF03453 MoeA N-terminal region (domain I and II) J172_02172 PF00994 Probable molybdopterin binding domain J172_02173 PF00899 ThiF family J172_02178 PF00107 Zinc-binding dehydrogenase J172_02178 PF13823 Alcohol dehydrogenase GroES-associated J172_02178 PF08240 Alcohol dehydrogenase GroES-like domain J172_02180 PF03372 Endonuclease/Exonuclease/phosphatase family J172_02182 PF03453 MoeA N-terminal region (domain I and II) J172_02182 PF03454 MoeA C-terminal region (domain IV) J172_02182 PF00994 Probable molybdopterin binding domain J172_02183 PF12804 MobA-like NTP transferase domain J172_02185 PF00561 alpha/beta hydrolase fold J172_02186 PF01566 Natural resistance-associated macrophage protein J172_02187 PF01325 Iron dependent repressor, N-terminal DNA binding domain J172_02187 PF02742 Iron dependent repressor, metal binding and dimerisation domain J172_02188 PF14437 MafB19-like deaminase J172_02189 PF00929 Exonuclease J172_02190 PF05552 Conserved TM helix J172_02190 PF00924 Mechanosensitive ion channel J172_02191 PF02896 PEP-utilising enzyme, TIM barrel domain J172_02191 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J172_02191 PF00391 PEP-utilising enzyme, mobile domain J172_02192 PF03618 Kinase/pyrophosphorylase J172_02196 PF01066 CDP-alcohol phosphatidyltransferase J172_02198 PF00561 alpha/beta hydrolase fold J172_02201 PF00355 Rieske [2Fe-2S] domain J172_02201 PF01266 FAD dependent oxidoreductase J172_02203 PF17674 HHH domain J172_02203 PF09371 Tex-like protein N-terminal domain J172_02203 PF16921 Tex protein YqgF-like domain J172_02203 PF00575 S1 RNA binding domain J172_02204 PF00072 Response regulator receiver domain J172_02204 PF09308 LuxQ, periplasmic J172_02204 PF00512 His Kinase A (phospho-acceptor) domain J172_02204 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_02212 PF00034 Cytochrome c J172_02214 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J172_02215 PF00873 AcrB/AcrD/AcrF family J172_02216 PF00873 AcrB/AcrD/AcrF family J172_02217 PF01081 KDPG and KHG aldolase J172_02218 PF00920 Dehydratase family J172_02219 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J172_02220 PF02685 Glucokinase J172_02221 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J172_02221 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J172_02222 PF00005 ABC transporter J172_02222 PF17912 MalK OB fold domain J172_02225 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J172_02226 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J172_02227 PF00890 FAD binding domain J172_02227 PF02910 Fumarate reductase flavoprotein C-term J172_02229 PF13085 2Fe-2S iron-sulfur cluster binding domain J172_02230 PF03937 Flavinator of succinate dehydrogenase J172_02232 PF02687 FtsX-like permease family J172_02232 PF12704 MacB-like periplasmic core domain J172_02233 PF00005 ABC transporter J172_02235 PF00753 Metallo-beta-lactamase superfamily J172_02235 PF03772 Competence protein J172_02236 PF01618 MotA/TolQ/ExbB proton channel family J172_02238 PF00664 ABC transporter transmembrane region J172_02238 PF00005 ABC transporter J172_02239 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J172_02240 PF02348 Cytidylyltransferase J172_02241 PF01451 Low molecular weight phosphotyrosine protein phosphatase J172_02243 PF08459 UvrC Helix-hairpin-helix N-terminal J172_02243 PF02151 UvrB/uvrC motif J172_02243 PF01541 GIY-YIG catalytic domain J172_02244 PF01066 CDP-alcohol phosphatidyltransferase J172_02248 PF00668 Condensation domain J172_02248 PF00550 Phosphopantetheine attachment site J172_02248 PF00501 AMP-binding enzyme J172_02248 PF13193 AMP-binding enzyme C-terminal domain J172_02249 PF13193 AMP-binding enzyme C-terminal domain J172_02249 PF00550 Phosphopantetheine attachment site J172_02249 PF00975 Thioesterase domain J172_02249 PF00668 Condensation domain J172_02249 PF00501 AMP-binding enzyme J172_02251 PF01527 Transposase J172_02253 PF01527 Transposase J172_02254 PF00589 Phage integrase family J172_02256 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J172_02256 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J172_02256 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J172_02258 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J172_02261 PF00072 Response regulator receiver domain J172_02261 PF00196 Bacterial regulatory proteins, luxR family J172_02262 PF12111 Polyribonucleotide phosphorylase C terminal J172_02262 PF00575 S1 RNA binding domain J172_02262 PF10150 Ribonuclease E/G family J172_02263 PF01479 S4 domain J172_02263 PF00849 RNA pseudouridylate synthase J172_02264 PF11737 Protein of unknown function (DUF3300) J172_02265 PF02535 ZIP Zinc transporter J172_02267 PF01329 Pterin 4 alpha carbinolamine dehydratase J172_02268 PF01106 NifU-like domain J172_02279 PF00106 short chain dehydrogenase J172_02284 PF01527 Transposase J172_02285 PF01494 FAD binding domain J172_02286 PF09335 SNARE associated Golgi protein J172_02288 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J172_02289 PF07995 Glucose / Sorbosone dehydrogenase J172_02291 PF00144 Beta-lactamase J172_02292 PF04397 LytTr DNA-binding domain J172_02292 PF00072 Response regulator receiver domain J172_02293 PF06580 Histidine kinase J172_02293 PF07694 5TMR of 5TMR-LYT J172_02293 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_02295 PF00082 Subtilase family J172_02295 PF03797 Autotransporter beta-domain J172_02296 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J172_02297 PF00873 AcrB/AcrD/AcrF family J172_02299 PF00512 His Kinase A (phospho-acceptor) domain J172_02299 PF00072 Response regulator receiver domain J172_02299 PF08448 PAS fold J172_02299 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_02299 PF13426 PAS domain J172_02300 PF00196 Bacterial regulatory proteins, luxR family J172_02300 PF00072 Response regulator receiver domain J172_02301 PF12951 Passenger-associated-transport-repeat J172_02301 PF12951 Passenger-associated-transport-repeat J172_02302 PF00563 EAL domain J172_02302 PF00990 Diguanylate cyclase, GGDEF domain J172_02302 PF08448 PAS fold J172_02302 PF08447 PAS fold J172_02305 PF05974 Domain of unknown function (DUF892) J172_02307 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J172_02309 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J172_02309 PF10414 Sirohaem synthase dimerisation region J172_02309 PF14824 Sirohaem biosynthesis protein central J172_02312 PF05977 Transmembrane secretion effector J172_02313 PF07969 Amidohydrolase family J172_02315 PF00857 Isochorismatase family J172_02318 PF00196 Bacterial regulatory proteins, luxR family J172_02318 PF00072 Response regulator receiver domain J172_02321 PF03466 LysR substrate binding domain J172_02321 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_02322 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus J172_02322 PF00361 Proton-conducting membrane transporter J172_02322 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J172_02323 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) J172_02325 PF01527 Transposase J172_02326 PF01381 Helix-turn-helix J172_02327 PF05284 Protein of unknown function (DUF736) J172_02328 PF04002 RadC-like JAB domain J172_02333 PF13356 Arm DNA-binding domain J172_02333 PF00589 Phage integrase family J172_02336 PF07715 TonB-dependent Receptor Plug Domain J172_02336 PF00593 TonB dependent receptor J172_02340 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin J172_02345 PF00593 TonB dependent receptor J172_02345 PF07715 TonB-dependent Receptor Plug Domain J172_02348 PF10947 Protein of unknown function (DUF2628) J172_02350 PF00722 Glycosyl hydrolases family 16 J172_02350 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) J172_02355 PF00664 ABC transporter transmembrane region J172_02355 PF03412 Peptidase C39 family J172_02355 PF00005 ABC transporter J172_02357 PF13614 AAA domain J172_02365 PF01131 DNA topoisomerase J172_02365 PF01751 Toprim domain J172_02366 PF01751 Toprim domain J172_02366 PF01131 DNA topoisomerase J172_02367 PF00145 C-5 cytosine-specific DNA methylase J172_02379 PF17761 DUF1016 N-terminal domain J172_02379 PF06250 YhcG PDDEXK nuclease domain J172_02380 PF01527 Transposase J172_02382 PF00892 EamA-like transporter family J172_02383 PF00892 EamA-like transporter family J172_02385 PF02525 Flavodoxin-like fold J172_02386 PF02798 Glutathione S-transferase, N-terminal domain J172_02386 PF00043 Glutathione S-transferase, C-terminal domain J172_02387 PF05544 Proline racemase J172_02388 PF03358 NADPH-dependent FMN reductase J172_02390 PF07690 Major Facilitator Superfamily J172_02391 PF12833 Helix-turn-helix domain J172_02391 PF02311 AraC-like ligand binding domain J172_02421 PF13361 UvrD-like helicase C-terminal domain J172_02421 PF12462 DNA helicase IV / RNA helicase N terminal J172_02421 PF00580 UvrD/REP helicase N-terminal domain J172_02436 PF03466 LysR substrate binding domain J172_02436 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_02437 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J172_02437 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J172_02438 PF03401 Tripartite tricarboxylate transporter family receptor J172_02442 PF04002 RadC-like JAB domain J172_02449 PF13356 Arm DNA-binding domain J172_02449 PF00589 Phage integrase family J172_02450 PF02540 NAD synthase J172_02450 PF00958 GMP synthase C terminal domain J172_02450 PF00117 Glutamine amidotransferase class-I J172_02451 PF00478 IMP dehydrogenase / GMP reductase domain J172_02451 PF00571 CBS domain J172_02452 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J172_02452 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J172_02454 PF02254 TrkA-N domain J172_02454 PF00999 Sodium/hydrogen exchanger family J172_02455 PF00483 Nucleotidyl transferase J172_02456 PF02719 Polysaccharide biosynthesis protein J172_02457 PF00953 Glycosyl transferase family 4 J172_02458 PF18073 Rubredoxin metal binding domain J172_02460 PF00216 Bacterial DNA-binding protein J172_02461 PF00575 S1 RNA binding domain J172_02462 PF02224 Cytidylate kinase J172_02463 PF00444 Ribosomal protein L36 J172_02466 PF04371 Porphyromonas-type peptidyl-arginine deiminase J172_02467 PF00795 Carbon-nitrogen hydrolase J172_02472 PF00528 Binding-protein-dependent transport system inner membrane component J172_02473 PF00528 Binding-protein-dependent transport system inner membrane component J172_02477 PF00356 Bacterial regulatory proteins, lacI family J172_02479 PF03795 YCII-related domain J172_02480 PF02616 Segregation and condensation protein ScpA J172_02481 PF04079 Segregation and condensation complex subunit ScpB J172_02482 PF01479 S4 domain J172_02482 PF00849 RNA pseudouridylate synthase J172_02485 PF00795 Carbon-nitrogen hydrolase J172_02486 PF00155 Aminotransferase class I and II J172_02487 PF00005 ABC transporter J172_02488 PF03379 CcmB protein J172_02489 PF01578 Cytochrome C assembly protein J172_02491 PF03100 CcmE J172_02492 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J172_02492 PF01578 Cytochrome C assembly protein J172_02493 PF08534 Redoxin J172_02494 PF03918 Cytochrome C biogenesis protein J172_02496 PF00561 alpha/beta hydrolase fold J172_02497 PF00313 'Cold-shock' DNA-binding domain J172_02498 PF00664 ABC transporter transmembrane region J172_02498 PF00005 ABC transporter J172_02499 PF00664 ABC transporter transmembrane region J172_02499 PF00005 ABC transporter J172_02500 PF01654 Cytochrome bd terminal oxidase subunit I J172_02501 PF02322 Cytochrome bd terminal oxidase subunit II J172_02505 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J172_02505 PF02129 X-Pro dipeptidyl-peptidase (S15 family) J172_02506 PF00171 Aldehyde dehydrogenase family J172_02507 PF01472 PUA domain J172_02507 PF00696 Amino acid kinase family J172_02509 PF00206 Lyase J172_02510 PF01118 Semialdehyde dehydrogenase, NAD binding domain J172_02512 PF00696 Amino acid kinase family J172_02512 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase J172_02515 PF00764 Arginosuccinate synthase J172_02516 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J172_02516 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J172_02518 PF09190 DALR domain J172_02518 PF01406 tRNA synthetases class I (C) catalytic domain J172_02519 PF02657 Fe-S metabolism associated domain J172_02521 PF01258 Prokaryotic dksA/traR C4-type zinc finger J172_02522 PF01809 Putative membrane protein insertion efficiency factor J172_02523 PF01979 Amidohydrolase family J172_02524 PF01551 Peptidase family M23 J172_02524 PF08460 Bacterial SH3 domain J172_02527 PF06751 Ethanolamine ammonia lyase large subunit (EutB) J172_02528 PF05985 Ethanolamine ammonia-lyase light chain (EutC) J172_02530 PF00753 Metallo-beta-lactamase superfamily J172_02534 PF01527 Transposase J172_02537 PF00295 Glycosyl hydrolases family 28 J172_02539 PF13419 Haloacid dehalogenase-like hydrolase J172_02541 PF01979 Amidohydrolase family J172_02543 PF08207 Elongation factor P (EF-P) KOW-like domain J172_02543 PF01132 Elongation factor P (EF-P) OB domain J172_02543 PF09285 Elongation factor P, C-terminal J172_02544 PF04055 Radical SAM superfamily J172_02545 PF03707 Bacterial signalling protein N terminal repeat J172_02545 PF00990 Diguanylate cyclase, GGDEF domain J172_02545 PF13188 PAS domain J172_02545 PF00563 EAL domain J172_02547 PF00588 SpoU rRNA Methylase family J172_02548 PF00459 Inositol monophosphatase family J172_02549 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J172_02549 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J172_02550 PF00545 ribonuclease J172_02553 PF03880 DbpA RNA binding domain J172_02553 PF00271 Helicase conserved C-terminal domain J172_02553 PF00270 DEAD/DEAH box helicase J172_02554 PF00156 Phosphoribosyl transferase domain J172_02555 PF02696 Uncharacterized ACR, YdiU/UPF0061 family J172_02556 PF00135 Carboxylesterase family J172_02557 PF02798 Glutathione S-transferase, N-terminal domain J172_02557 PF14497 Glutathione S-transferase, C-terminal domain J172_02558 PF00313 'Cold-shock' DNA-binding domain J172_02559 PF07152 YaeQ protein J172_02561 PF00990 Diguanylate cyclase, GGDEF domain J172_02561 PF00072 Response regulator receiver domain J172_02561 PF00563 EAL domain J172_02562 PF01435 Peptidase family M48 J172_02563 PF00749 tRNA synthetases class I (E and Q), catalytic domain J172_02564 PF00106 short chain dehydrogenase J172_02565 PF05233 PHB accumulation regulatory domain J172_02565 PF07879 PHB/PHA accumulation regulator DNA-binding domain J172_02568 PF08676 MutL C terminal dimerisation domain J172_02568 PF01119 DNA mismatch repair protein, C-terminal domain J172_02569 PF01520 N-acetylmuramoyl-L-alanine amidase J172_02569 PF11741 AMIN domain J172_02570 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J172_02571 PF03853 YjeF-related protein N-terminus J172_02571 PF01256 Carbohydrate kinase J172_02572 PF08331 Domain of unknown function (DUF1730) J172_02573 PF13742 OB-fold nucleic acid binding domain J172_02573 PF02601 Exonuclease VII, large subunit J172_02575 PF03781 Sulfatase-modifying factor enzyme 1 J172_02576 PF00570 HRDC domain J172_02576 PF01612 3'-5' exonuclease J172_02578 PF04679 ATP dependent DNA ligase C terminal region J172_02578 PF13298 DNA polymerase Ligase (LigD) J172_02578 PF01068 ATP dependent DNA ligase domain J172_02582 PF00589 Phage integrase family J172_02586 PF05598 Transposase domain (DUF772) J172_02588 PF01527 Transposase J172_02592 PF00171 Aldehyde dehydrogenase family J172_02592 PF14850 DNA-binding domain of Proline dehydrogenase J172_02592 PF01619 Proline dehydrogenase J172_02592 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J172_02594 PF01527 Transposase J172_02596 PF13276 HTH-like domain J172_02596 PF00665 Integrase core domain J172_02596 PF13333 Integrase core domain J172_02598 PF00239 Resolvase, N terminal domain J172_02598 PF02796 Helix-turn-helix domain of resolvase J172_02601 PF02384 N-6 DNA Methylase J172_02602 PF09572 XamI restriction endonuclease J172_02614 PF01584 CheW-like domain J172_02615 PF12729 Four helix bundle sensory module for signal transduction J172_02615 PF00672 HAMP domain J172_02615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_02616 PF02245 Methylpurine-DNA glycosylase (MPG) J172_02617 PF08494 DEAD/H associated J172_02617 PF00271 Helicase conserved C-terminal domain J172_02617 PF00270 DEAD/DEAH box helicase J172_02620 PF04386 Stringent starvation protein B J172_02621 PF02798 Glutathione S-transferase, N-terminal domain J172_02621 PF00043 Glutathione S-transferase, C-terminal domain J172_02622 PF02167 Cytochrome C1 family J172_02623 PF00033 Cytochrome b/b6/petB J172_02623 PF00032 Cytochrome b(C-terminal)/b6/petD J172_02624 PF00355 Rieske [2Fe-2S] domain J172_02624 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal J172_02625 PF01464 Transglycosylase SLT domain J172_02628 PF01938 TRAM domain J172_02628 PF00919 Uncharacterized protein family UPF0004 J172_02628 PF04055 Radical SAM superfamily J172_02629 PF02562 PhoH-like protein J172_02631 PF02130 Uncharacterized protein family UPF0054 J172_02633 PF03471 Transporter associated domain J172_02633 PF00571 CBS domain J172_02636 PF00171 Aldehyde dehydrogenase family J172_02637 PF00528 Binding-protein-dependent transport system inner membrane component J172_02638 PF00528 Binding-protein-dependent transport system inner membrane component J172_02639 PF08402 TOBE domain J172_02639 PF00005 ABC transporter J172_02640 PF02321 Outer membrane efflux protein J172_02641 PF07690 Major Facilitator Superfamily J172_02642 PF13533 Biotin-lipoyl like J172_02643 PF13416 Bacterial extracellular solute-binding protein J172_02644 PF00202 Aminotransferase class-III J172_02645 PF00120 Glutamine synthetase, catalytic domain J172_02646 PF07722 Peptidase C26 J172_02647 PF00120 Glutamine synthetase, catalytic domain J172_02648 PF01266 FAD dependent oxidoreductase J172_02649 PF00072 Response regulator receiver domain J172_02649 PF00990 Diguanylate cyclase, GGDEF domain J172_02650 PF01814 Hemerythrin HHE cation binding domain J172_02651 PF07690 Major Facilitator Superfamily J172_02651 PF00083 Sugar (and other) transporter J172_02653 PF00384 Molybdopterin oxidoreductase J172_02654 PF02634 FdhD/NarQ family J172_02655 PF07690 Major Facilitator Superfamily J172_02656 PF00202 Aminotransferase class-III J172_02658 PF04286 Protein of unknown function (DUF445) J172_02659 PF01627 Hpt domain J172_02659 PF00072 Response regulator receiver domain J172_02659 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J172_02659 PF00672 HAMP domain J172_02659 PF00512 His Kinase A (phospho-acceptor) domain J172_02659 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_02660 PF00072 Response regulator receiver domain J172_02661 PF07690 Major Facilitator Superfamily J172_02662 PF05088 Bacterial NAD-glutamate dehydrogenase J172_02664 PF00529 HlyD membrane-fusion protein of T1SS J172_02664 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J172_02665 PF00873 AcrB/AcrD/AcrF family J172_02666 PF00356 Bacterial regulatory proteins, lacI family J172_02667 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J172_02667 PF02896 PEP-utilising enzyme, TIM barrel domain J172_02667 PF05524 PEP-utilising enzyme, N-terminal J172_02667 PF00381 PTS HPr component phosphorylation site J172_02667 PF00391 PEP-utilising enzyme, mobile domain J172_02668 PF00294 pfkB family carbohydrate kinase J172_02669 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J172_02677 PF02355 Protein export membrane protein J172_02677 PF07549 SecD/SecF GG Motif J172_02678 PF13721 SecD export protein N-terminal TM region J172_02678 PF02355 Protein export membrane protein J172_02678 PF07549 SecD/SecF GG Motif J172_02679 PF02699 Preprotein translocase subunit J172_02680 PF01702 Queuine tRNA-ribosyltransferase J172_02681 PF02547 Queuosine biosynthesis protein J172_02690 PF02927 Cellulase N-terminal ig-like domain J172_02690 PF00759 Glycosyl hydrolase family 9 J172_02692 PF00037 4Fe-4S binding domain J172_02695 PF01467 Cytidylyltransferase-like J172_02697 PF00183 Hsp90 protein J172_02697 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_02701 PF00593 TonB dependent receptor J172_02701 PF07715 TonB-dependent Receptor Plug Domain J172_02703 PF04616 Glycosyl hydrolases family 43 J172_02704 PF07532 Bacterial Ig-like domain (group 4) J172_02705 PF00593 TonB dependent receptor J172_02705 PF07715 TonB-dependent Receptor Plug Domain J172_02707 PF00082 Subtilase family J172_02707 PF09286 Pro-kumamolisin, activation domain J172_02713 PF13520 Amino acid permease J172_02716 PF00557 Metallopeptidase family M24 J172_02716 PF01321 Creatinase/Prolidase N-terminal domain J172_02717 PF00171 Aldehyde dehydrogenase family J172_02718 PF00701 Dihydrodipicolinate synthetase family J172_02719 PF04324 BFD-like [2Fe-2S] binding domain J172_02719 PF07992 Pyridine nucleotide-disulphide oxidoreductase J172_02721 PF01266 FAD dependent oxidoreductase J172_02722 PF05544 Proline racemase J172_02724 PF02881 SRP54-type protein, helical bundle domain J172_02724 PF00448 SRP54-type protein, GTPase domain J172_02725 PF00633 Helix-hairpin-helix motif J172_02725 PF10576 Iron-sulfur binding domain of endonuclease III J172_02725 PF00730 HhH-GPD superfamily base excision DNA repair protein J172_02725 PF14815 NUDIX domain J172_02726 PF04362 Bacterial Fe(2+) trafficking J172_02727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_02727 PF13426 PAS domain J172_02727 PF00072 Response regulator receiver domain J172_02733 PF08212 Lipocalin-like domain J172_02735 PF12806 Acetyl-CoA dehydrogenase C-terminal like J172_02735 PF02770 Acyl-CoA dehydrogenase, middle domain J172_02735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J172_02735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J172_02737 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J172_02737 PF02779 Transketolase, pyrimidine binding domain J172_02737 PF02780 Transketolase, C-terminal domain J172_02741 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family J172_02742 PF00753 Metallo-beta-lactamase superfamily J172_02742 PF16123 Hydroxyacylglutathione hydrolase C-terminus J172_02743 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J172_02743 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J172_02746 PF03808 Glycosyl transferase WecB/TagA/CpsF family J172_02749 PF14667 Polysaccharide biosynthesis C-terminal domain J172_02751 PF00534 Glycosyl transferases group 1 J172_02751 PF13439 Glycosyltransferase Family 4 J172_02755 PF02397 Bacterial sugar transferase J172_02759 PF13411 MerR HTH family regulatory protein J172_02760 PF00216 Bacterial DNA-binding protein J172_02761 PF03483 B3/4 domain J172_02761 PF03484 tRNA synthetase B5 domain J172_02761 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J172_02761 PF03147 Ferredoxin-fold anticodon binding domain J172_02761 PF01588 Putative tRNA binding domain J172_02762 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J172_02762 PF01409 tRNA synthetases class II core domain (F) J172_02763 PF00453 Ribosomal protein L20 J172_02764 PF01632 Ribosomal protein L35 J172_02766 PF05198 Translation initiation factor IF-3, N-terminal domain J172_02766 PF00707 Translation initiation factor IF-3, C-terminal domain J172_02767 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J172_02767 PF02824 TGS domain J172_02767 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J172_02767 PF03129 Anticodon binding domain J172_02768 PF00356 Bacterial regulatory proteins, lacI family J172_02769 PF00128 Alpha amylase, catalytic domain J172_02769 PF00686 Starch binding domain J172_02770 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J172_02772 PF14508 Glycosyl-hydrolase 97 N-terminal J172_02772 PF10566 Glycoside hydrolase 97 J172_02772 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation J172_02776 PF00128 Alpha amylase, catalytic domain J172_02778 PF01527 Transposase J172_02787 PF03135 CagE, TrbE, VirB family, component of type IV transporter system J172_02790 PF01464 Transglycosylase SLT domain J172_02791 PF00437 Type II/IV secretion system protein J172_02792 PF03743 Bacterial conjugation TrbI-like protein J172_02796 PF02534 Type IV secretory system Conjugative DNA transfer J172_02799 PF17757 UvrB interaction domain J172_02799 PF12344 Ultra-violet resistance protein B J172_02799 PF02151 UvrB/uvrC motif J172_02799 PF04851 Type III restriction enzyme, res subunit J172_02799 PF00271 Helicase conserved C-terminal domain J172_02807 PF01527 Transposase J172_02816 PF01555 DNA methylase J172_02826 PF00182 Chitinase class I J172_02837 PF01527 Transposase J172_02838 PF00114 Pilin (bacterial filament) J172_02838 PF07963 Prokaryotic N-terminal methylation motif J172_02839 PF05567 Neisseria PilC beta-propeller domain J172_02842 PF06580 Histidine kinase J172_02842 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_02842 PF07694 5TMR of 5TMR-LYT J172_02843 PF03641 Possible lysine decarboxylase J172_02843 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases J172_02843 PF11892 Domain of unknown function (DUF3412) J172_02844 PF00593 TonB dependent receptor J172_02845 PF01914 MarC family integral membrane protein J172_02847 PF00462 Glutaredoxin J172_02848 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J172_02848 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J172_02849 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J172_02849 PF02222 ATP-grasp domain J172_02850 PF00731 AIR carboxylase J172_02852 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain J172_02852 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain J172_02854 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J172_02854 PF00575 S1 RNA binding domain J172_02854 PF03725 3' exoribonuclease family, domain 2 J172_02854 PF01138 3' exoribonuclease family, domain 1 J172_02854 PF00013 KH domain J172_02855 PF00312 Ribosomal protein S15 J172_02856 PF01509 TruB family pseudouridylate synthase (N terminal domain) J172_02856 PF09157 Pseudouridine synthase II TruB, C-terminal J172_02856 PF16198 tRNA pseudouridylate synthase B C-terminal domain J172_02857 PF02033 Ribosome-binding factor A J172_02858 PF00009 Elongation factor Tu GTP binding domain J172_02858 PF08364 Bacterial translation initiation factor IF-2 associated region J172_02858 PF11987 Translation-initiation factor 2 J172_02858 PF04760 Translation initiation factor IF-2, N-terminal region J172_02859 PF13184 NusA-like KH domain J172_02859 PF08529 NusA N-terminal domain J172_02859 PF00575 S1 RNA binding domain J172_02860 PF17384 RimP C-terminal SH3 domain J172_02860 PF02576 RimP N-terminal domain J172_02862 PF00361 Proton-conducting membrane transporter J172_02863 PF00361 Proton-conducting membrane transporter J172_02863 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus J172_02864 PF00361 Proton-conducting membrane transporter J172_02864 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J172_02865 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J172_02866 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 J172_02867 PF12838 4Fe-4S dicluster domain J172_02868 PF00146 NADH dehydrogenase J172_02869 PF00384 Molybdopterin oxidoreductase J172_02869 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J172_02869 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal J172_02870 PF10531 SLBB domain J172_02870 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J172_02870 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J172_02872 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit J172_02873 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit J172_02874 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit J172_02875 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 J172_02878 PF00121 Triosephosphate isomerase J172_02879 PF00106 short chain dehydrogenase J172_02882 PF00563 EAL domain J172_02882 PF03707 Bacterial signalling protein N terminal repeat J172_02882 PF00990 Diguanylate cyclase, GGDEF domain J172_02885 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J172_02885 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J172_02885 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J172_02885 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J172_02886 PF17848 Acetyl-coA carboxylase zinc finger domain J172_02886 PF01039 Carboxyl transferase domain J172_02887 PF00290 Tryptophan synthase alpha chain J172_02889 PF00291 Pyridoxal-phosphate dependent enzyme J172_02890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_02890 PF03466 LysR substrate binding domain J172_02891 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase J172_02892 PF01416 tRNA pseudouridine synthase J172_02896 PF02774 Semialdehyde dehydrogenase, dimerisation domain J172_02896 PF01118 Semialdehyde dehydrogenase, NAD binding domain J172_02897 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J172_02897 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J172_02898 PF01264 Chorismate synthase J172_02899 PF05175 Methyltransferase small domain J172_02900 PF02630 SCO1/SenC J172_02901 PF02666 Phosphatidylserine decarboxylase J172_02903 PF05872 Bacterial protein of unknown function (DUF853) J172_02904 PF00293 NUDIX domain J172_02907 PF03449 Transcription elongation factor, N-terminal J172_02907 PF01272 Transcription elongation factor, GreA/GreB, C-term J172_02908 PF18693 TRAM domain J172_02908 PF00919 Uncharacterized protein family UPF0004 J172_02908 PF04055 Radical SAM superfamily J172_02909 PF01738 Dienelactone hydrolase family J172_02913 PF00692 dUTPase J172_02914 PF10609 NUBPL iron-transfer P-loop NTPase J172_02915 PF07715 TonB-dependent Receptor Plug Domain J172_02915 PF00593 TonB dependent receptor J172_02918 PF05649 Peptidase family M13 J172_02918 PF01431 Peptidase family M13 J172_02919 PF05649 Peptidase family M13 J172_02919 PF01431 Peptidase family M13 J172_02922 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J172_02923 PF07992 Pyridine nucleotide-disulphide oxidoreductase J172_02923 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J172_02924 PF01266 FAD dependent oxidoreductase J172_02925 PF04235 Protein of unknown function (DUF418) J172_02926 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J172_02927 PF00877 NlpC/P60 family J172_02928 PF00877 NlpC/P60 family J172_02931 PF00375 Sodium:dicarboxylate symporter family J172_02932 PF00245 Alkaline phosphatase J172_02933 PF01171 PP-loop family J172_02933 PF09179 TilS substrate binding domain J172_02933 PF11734 TilS substrate C-terminal domain J172_02934 PF02609 Exonuclease VII small subunit J172_02935 PF00348 Polyprenyl synthetase J172_02936 PF14521 Lysine-specific metallo-endopeptidase J172_02938 PF01523 Putative modulator of DNA gyrase J172_02939 PF04751 Protein of unknown function (DUF615) J172_02940 PF01523 Putative modulator of DNA gyrase J172_02942 PF13116 Protein of unknown function J172_02942 PF13502 AsmA-like C-terminal region J172_02943 PF10150 Ribonuclease E/G family J172_02943 PF00575 S1 RNA binding domain J172_02944 PF02545 Maf-like protein J172_02945 PF04402 Protein of unknown function (DUF541) J172_02948 PF02590 Predicted SPOUT methyltransferase J172_02951 PF01467 Cytidylyltransferase-like J172_02954 PF13603 Leucyl-tRNA synthetase, Domain 2 J172_02954 PF00133 tRNA synthetases class I (I, L, M and V) J172_02954 PF08264 Anticodon-binding domain of tRNA J172_02956 PF00085 Thioredoxin J172_02961 PF04070 Domain of unknown function (DUF378) J172_02962 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J172_02964 PF03466 LysR substrate binding domain J172_02964 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_02969 PF00664 ABC transporter transmembrane region J172_02969 PF00005 ABC transporter J172_02972 PF00873 AcrB/AcrD/AcrF family J172_02975 PF02321 Outer membrane efflux protein J172_02976 PF00486 Transcriptional regulatory protein, C terminal J172_02976 PF00072 Response regulator receiver domain J172_02977 PF00512 His Kinase A (phospho-acceptor) domain J172_02977 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_02977 PF00672 HAMP domain J172_02978 PF00999 Sodium/hydrogen exchanger family J172_02979 PF00144 Beta-lactamase J172_02980 PF03737 Aldolase/RraA J172_02983 PF00072 Response regulator receiver domain J172_02983 PF00990 Diguanylate cyclase, GGDEF domain J172_02984 PF01479 S4 domain J172_02984 PF00849 RNA pseudouridylate synthase J172_02985 PF00990 Diguanylate cyclase, GGDEF domain J172_02985 PF08448 PAS fold J172_02985 PF00563 EAL domain J172_02986 PF00271 Helicase conserved C-terminal domain J172_02986 PF00270 DEAD/DEAH box helicase J172_02986 PF03880 DbpA RNA binding domain J172_02996 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J172_02996 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J172_02998 PF00654 Voltage gated chloride channel J172_02999 PF00107 Zinc-binding dehydrogenase J172_02999 PF08240 Alcohol dehydrogenase GroES-like domain J172_03002 PF07715 TonB-dependent Receptor Plug Domain J172_03002 PF00593 TonB dependent receptor J172_03004 PF01483 Proprotein convertase P-domain J172_03004 PF00082 Subtilase family J172_03007 PF01483 Proprotein convertase P-domain J172_03007 PF00082 Subtilase family J172_03009 PF00248 Aldo/keto reductase family J172_03010 PF07690 Major Facilitator Superfamily J172_03011 PF03466 LysR substrate binding domain J172_03011 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_03013 PF06719 AraC-type transcriptional regulator N-terminus J172_03013 PF12833 Helix-turn-helix domain J172_03015 PF16859 Tetracyclin repressor-like, C-terminal domain J172_03015 PF00440 Bacterial regulatory proteins, tetR family J172_03016 PF02321 Outer membrane efflux protein J172_03017 PF00873 AcrB/AcrD/AcrF family J172_03018 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J172_03018 PF00529 HlyD membrane-fusion protein of T1SS J172_03020 PF01475 Ferric uptake regulator family J172_03021 PF00749 tRNA synthetases class I (E and Q), catalytic domain J172_03026 PF06123 Inner membrane protein CreD J172_03028 PF00512 His Kinase A (phospho-acceptor) domain J172_03028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_03028 PF00672 HAMP domain J172_03029 PF00072 Response regulator receiver domain J172_03029 PF00486 Transcriptional regulatory protein, C terminal J172_03030 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ J172_03032 PF17757 UvrB interaction domain J172_03032 PF03461 TRCF domain J172_03032 PF00271 Helicase conserved C-terminal domain J172_03032 PF00270 DEAD/DEAH box helicase J172_03032 PF02559 CarD-like/TRCF domain J172_03039 PF02895 Signal transducing histidine kinase, homodimeric domain J172_03039 PF01627 Hpt domain J172_03039 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_03039 PF09078 CheY binding J172_03039 PF01584 CheW-like domain J172_03040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_03040 PF02203 Tar ligand binding domain homologue J172_03040 PF00672 HAMP domain J172_03041 PF01584 CheW-like domain J172_03042 PF13426 PAS domain J172_03042 PF00563 EAL domain J172_03042 PF00990 Diguanylate cyclase, GGDEF domain J172_03043 PF01739 CheR methyltransferase, SAM binding domain J172_03043 PF03705 CheR methyltransferase, all-alpha domain J172_03044 PF01339 CheB methylesterase J172_03044 PF00072 Response regulator receiver domain J172_03045 PF13091 PLD-like domain J172_03046 PF01431 Peptidase family M13 J172_03046 PF05649 Peptidase family M13 J172_03048 PF00300 Histidine phosphatase superfamily (branch 1) J172_03049 PF04493 Endonuclease V J172_03051 PF05726 Pirin C-terminal cupin domain J172_03051 PF02678 Pirin J172_03054 PF05726 Pirin C-terminal cupin domain J172_03054 PF02678 Pirin J172_03055 PF02554 Carbon starvation protein CstA J172_03055 PF13722 5TM C-terminal transporter carbon starvation CstA J172_03056 PF04328 Selenoprotein, putative J172_03065 PF01527 Transposase J172_03067 PF02625 XdhC and CoxI family J172_03067 PF13478 XdhC Rossmann domain J172_03068 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J172_03068 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J172_03069 PF03450 CO dehydrogenase flavoprotein C-terminal domain J172_03069 PF00941 FAD binding domain in molybdopterin dehydrogenase J172_03070 PF10518 TAT (twin-arginine translocation) pathway signal sequence J172_03070 PF00111 2Fe-2S iron-sulfur cluster binding domain J172_03070 PF01799 [2Fe-2S] binding domain J172_03071 PF00698 Acyl transferase domain J172_03071 PF16197 Ketoacyl-synthetase C-terminal extension J172_03071 PF09277 Erythronolide synthase, docking J172_03071 PF00550 Phosphopantetheine attachment site J172_03071 PF08240 Alcohol dehydrogenase GroES-like domain J172_03071 PF08990 Erythronolide synthase docking J172_03071 PF02801 Beta-ketoacyl synthase, C-terminal domain J172_03071 PF14765 Polyketide synthase dehydratase J172_03071 PF00109 Beta-ketoacyl synthase, N-terminal domain J172_03071 PF08659 KR domain J172_03072 PF01590 GAF domain J172_03072 PF00563 EAL domain J172_03072 PF00360 Phytochrome region J172_03072 PF00990 Diguanylate cyclase, GGDEF domain J172_03075 PF02384 N-6 DNA Methylase J172_03075 PF12161 HsdM N-terminal domain J172_03081 PF00436 Single-strand binding protein family J172_03082 PF00348 Polyprenyl synthetase J172_03084 PF08245 Mur ligase middle domain J172_03084 PF02875 Mur ligase family, glutamate ligase domain J172_03087 PF01842 ACT domain J172_03087 PF00696 Amino acid kinase family J172_03088 PF02567 Phenazine biosynthesis-like protein J172_03089 PF02567 Phenazine biosynthesis-like protein J172_03091 PF02566 OsmC-like protein J172_03092 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J172_03092 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J172_03093 PF03652 Holliday junction resolvase J172_03094 PF02622 Uncharacterized ACR, COG1678 J172_03095 PF00117 Glutamine amidotransferase class-I J172_03095 PF13302 Acetyltransferase (GNAT) domain J172_03095 PF13673 Acetyltransferase (GNAT) domain J172_03095 PF00958 GMP synthase C terminal domain J172_03095 PF03352 Methyladenine glycosylase J172_03098 PF03211 Pectate lyase J172_03099 PF00437 Type II/IV secretion system protein J172_03100 PF00437 Type II/IV secretion system protein J172_03101 PF01168 Alanine racemase, N-terminal domain J172_03102 PF14748 Pyrroline-5-carboxylate reductase dimerisation J172_03102 PF03807 NADP oxidoreductase coenzyme F420-dependent J172_03104 PF01551 Peptidase family M23 J172_03108 PF01965 DJ-1/PfpI family J172_03110 PF02082 Transcriptional regulator J172_03111 PF01458 Uncharacterized protein family (UPF0051) J172_03112 PF00005 ABC transporter J172_03113 PF01458 Uncharacterized protein family (UPF0051) J172_03114 PF00266 Aminotransferase class-V J172_03116 PF00355 Rieske [2Fe-2S] domain J172_03117 PF07715 TonB-dependent Receptor Plug Domain J172_03117 PF00593 TonB dependent receptor J172_03118 PF13640 2OG-Fe(II) oxygenase superfamily J172_03118 PF18331 PKHD-type hydroxylase C-terminal domain J172_03123 PF02424 ApbE family J172_03124 PF00667 FAD binding domain J172_03124 PF00258 Flavodoxin J172_03124 PF00175 Oxidoreductase NAD-binding domain J172_03128 PF01546 Peptidase family M20/M25/M40 J172_03128 PF07687 Peptidase dimerisation domain J172_03130 PF01636 Phosphotransferase enzyme family J172_03131 PF00483 Nucleotidyl transferase J172_03132 PF00308 Bacterial dnaA protein J172_03133 PF01594 AI-2E family transporter J172_03135 PF02769 AIR synthase related protein, C-terminal domain J172_03135 PF00586 AIR synthase related protein, N-terminal domain J172_03137 PF00551 Formyl transferase J172_03141 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J172_03142 PF01722 BolA-like protein J172_03143 PF00571 CBS domain J172_03143 PF01380 SIS domain J172_03146 PF03968 OstA-like protein J172_03147 PF00005 ABC transporter J172_03148 PF04552 Sigma-54, DNA binding domain J172_03148 PF00309 Sigma-54 factor, Activator interacting domain (AID) J172_03148 PF04963 Sigma-54 factor, core binding domain J172_03149 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J172_03150 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J172_03151 PF07475 HPr Serine kinase C-terminal domain J172_03151 PF02603 HPr Serine kinase N terminus J172_03152 PF03668 P-loop ATPase protein family J172_03154 PF00381 PTS HPr component phosphorylation site J172_03155 PF02896 PEP-utilising enzyme, TIM barrel domain J172_03155 PF05524 PEP-utilising enzyme, N-terminal J172_03155 PF00391 PEP-utilising enzyme, mobile domain J172_03156 PF03448 MgtE intracellular N domain J172_03156 PF01769 Divalent cation transporter J172_03156 PF00571 CBS domain J172_03157 PF00756 Putative esterase J172_03158 PF02322 Cytochrome bd terminal oxidase subunit II J172_03159 PF01654 Cytochrome bd terminal oxidase subunit I J172_03161 PF00324 Amino acid permease J172_03162 PF00544 Pectate lyase J172_03163 PF00561 alpha/beta hydrolase fold J172_03164 PF00196 Bacterial regulatory proteins, luxR family J172_03165 PF00324 Amino acid permease J172_03170 PF12706 Beta-lactamase superfamily domain J172_03171 PF04820 Tryptophan halogenase J172_03176 PF00376 MerR family regulatory protein J172_03176 PF09278 MerR, DNA binding J172_03177 PF07690 Major Facilitator Superfamily J172_03179 PF03738 Glutathionylspermidine synthase preATP-grasp J172_03184 PF04012 PspA/IM30 family J172_03186 PF01243 Pyridoxamine 5'-phosphate oxidase J172_03186 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J172_03187 PF01202 Shikimate kinase J172_03188 PF01761 3-dehydroquinate synthase J172_03190 PF01208 Uroporphyrinogen decarboxylase (URO-D) J172_03203 PF01590 GAF domain J172_03203 PF02954 Bacterial regulatory protein, Fis family J172_03203 PF00158 Sigma-54 interaction domain J172_03204 PF07690 Major Facilitator Superfamily J172_03205 PF17149 Periplasmic sensor domain found in signal transduction proteins J172_03205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_03205 PF00672 HAMP domain J172_03205 PF00512 His Kinase A (phospho-acceptor) domain J172_03205 PF01627 Hpt domain J172_03205 PF00072 Response regulator receiver domain J172_03206 PF00672 HAMP domain J172_03206 PF00512 His Kinase A (phospho-acceptor) domain J172_03206 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_03206 PF00072 Response regulator receiver domain J172_03206 PF17149 Periplasmic sensor domain found in signal transduction proteins J172_03206 PF01627 Hpt domain J172_03208 PF00512 His Kinase A (phospho-acceptor) domain J172_03208 PF01627 Hpt domain J172_03208 PF00072 Response regulator receiver domain J172_03208 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_03209 PF04264 YceI-like domain J172_03213 PF03313 Serine dehydratase alpha chain J172_03213 PF03315 Serine dehydratase beta chain J172_03214 PF12697 Alpha/beta hydrolase family J172_03215 PF00696 Amino acid kinase family J172_03215 PF00742 Homoserine dehydrogenase J172_03215 PF03447 Homoserine dehydrogenase, NAD binding domain J172_03216 PF01053 Cys/Met metabolism PLP-dependent enzyme J172_03217 PF00561 alpha/beta hydrolase fold J172_03219 PF01476 LysM domain J172_03219 PF01551 Peptidase family M23 J172_03219 PF08525 Opacity-associated protein A N-terminal motif J172_03220 PF00009 Elongation factor Tu GTP binding domain J172_03220 PF16658 Class II release factor RF3, C-terminal domain J172_03221 PF03006 Haemolysin-III related J172_03222 PF05170 AsmA family J172_03223 PF00478 IMP dehydrogenase / GMP reductase domain J172_03223 PF00571 CBS domain J172_03224 PF00535 Glycosyl transferase family 2 J172_03225 PF00912 Transglycosylase J172_03226 PF01430 Hsp33 protein J172_03228 PF07715 TonB-dependent Receptor Plug Domain J172_03228 PF00593 TonB dependent receptor J172_03230 PF00440 Bacterial regulatory proteins, tetR family J172_03231 PF00561 alpha/beta hydrolase fold J172_03232 PF09317 Domain of unknown function (DUF1974) J172_03232 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J172_03232 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J172_03237 PF01597 Glycine cleavage H-protein J172_03238 PF01571 Aminomethyltransferase folate-binding domain J172_03238 PF08669 Glycine cleavage T-protein C-terminal barrel domain J172_03240 PF16200 C-terminal region of band_7 J172_03240 PF01145 SPFH domain / Band 7 family J172_03241 PF02694 Uncharacterised BCR, YnfA/UPF0060 family J172_03242 PF03819 MazG nucleotide pyrophosphohydrolase domain J172_03243 PF00459 Inositol monophosphatase family J172_03244 PF00293 NUDIX domain J172_03245 PF00202 Aminotransferase class-III J172_03246 PF04452 RNA methyltransferase J172_03247 PF02685 Glucokinase J172_03250 PF01476 LysM domain J172_03250 PF00704 Glycosyl hydrolases family 18 J172_03251 PF00728 Glycosyl hydrolase family 20, catalytic domain J172_03251 PF02838 Glycosyl hydrolase family 20, domain 2 J172_03251 PF07691 PA14 domain J172_03253 PF07691 PA14 domain J172_03253 PF01915 Glycosyl hydrolase family 3 C-terminal domain J172_03253 PF14310 Fibronectin type III-like domain J172_03253 PF00933 Glycosyl hydrolase family 3 N terminal domain J172_03255 PF01301 Glycosyl hydrolases family 35 J172_03256 PF13520 Amino acid permease J172_03258 PF11975 Family 4 glycosyl hydrolase C-terminal domain J172_03258 PF02056 Family 4 glycosyl hydrolase J172_03260 PF17678 Glycosyl hydrolase family 92 N-terminal domain J172_03260 PF07971 Glycosyl hydrolase family 92 J172_03261 PF01301 Glycosyl hydrolases family 35 J172_03267 PF03932 CutC family J172_03268 PF01112 Asparaginase J172_03269 PF13302 Acetyltransferase (GNAT) domain J172_03272 PF01627 Hpt domain J172_03272 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_03272 PF00072 Response regulator receiver domain J172_03272 PF01584 CheW-like domain J172_03273 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_03273 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J172_03275 PF00072 Response regulator receiver domain J172_03276 PF00072 Response regulator receiver domain J172_03277 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain J172_03277 PF02951 Prokaryotic glutathione synthetase, N-terminal domain J172_03279 PF03747 ADP-ribosylglycohydrolase J172_03280 PF00814 Glycoprotease family J172_03281 PF13307 Helicase C-terminal domain J172_03281 PF04851 Type III restriction enzyme, res subunit J172_03283 PF00912 Transglycosylase J172_03283 PF14814 Bifunctional transglycosylase second domain J172_03283 PF00905 Penicillin binding protein transpeptidase domain J172_03284 PF00535 Glycosyl transferase family 2 J172_03286 PF13291 ACT domain J172_03286 PF04607 Region found in RelA / SpoT proteins J172_03286 PF02824 TGS domain J172_03287 PF12706 Beta-lactamase superfamily domain J172_03288 PF03070 TENA/THI-4/PQQC family J172_03289 PF05402 Coenzyme PQQ synthesis protein D (PqqD) J172_03290 PF13186 Iron-sulfur cluster-binding domain J172_03290 PF04055 Radical SAM superfamily J172_03293 PF02685 Glucokinase J172_03295 PF04408 Helicase associated domain (HA2) J172_03295 PF11898 Domain of unknown function (DUF3418) J172_03295 PF00271 Helicase conserved C-terminal domain J172_03295 PF00270 DEAD/DEAH box helicase J172_03295 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J172_03296 PF00210 Ferritin-like domain J172_03297 PF16124 RecQ zinc-binding J172_03297 PF00570 HRDC domain J172_03297 PF00271 Helicase conserved C-terminal domain J172_03297 PF00270 DEAD/DEAH box helicase J172_03297 PF09382 RQC domain J172_03304 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_03304 PF02203 Tar ligand binding domain homologue J172_03304 PF00672 HAMP domain J172_03308 PF13581 Histidine kinase-like ATPase domain J172_03308 PF07536 HWE histidine kinase J172_03308 PF13426 PAS domain J172_03309 PF06508 Queuosine biosynthesis protein QueC J172_03311 PF04055 Radical SAM superfamily J172_03313 PF00691 OmpA family J172_03314 PF07676 WD40-like Beta Propeller Repeat J172_03314 PF04052 TolB amino-terminal domain J172_03316 PF02472 Biopolymer transport protein ExbD/TolR J172_03317 PF01618 MotA/TolQ/ExbB proton channel family J172_03318 PF03061 Thioesterase superfamily J172_03319 PF05496 Holliday junction DNA helicase RuvB P-loop domain J172_03319 PF17864 RuvB AAA lid domain J172_03319 PF05491 RuvB C-terminal winged helix domain J172_03321 PF02705 K+ potassium transporter J172_03322 PF07499 RuvA, C-terminal domain J172_03322 PF01330 RuvA N terminal domain J172_03323 PF02075 Crossover junction endodeoxyribonuclease RuvC J172_03324 PF01709 Transcriptional regulator J172_03327 PF01336 OB-fold nucleic acid binding domain J172_03327 PF00152 tRNA synthetases class II (D, K and N) J172_03327 PF02938 GAD domain J172_03330 PF07690 Major Facilitator Superfamily J172_03333 PF05506 Domain of unknown function (DUF756) J172_03333 PF04185 Phosphoesterase family J172_03336 PF03466 LysR substrate binding domain J172_03336 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_03338 PF12848 ABC transporter J172_03338 PF00005 ABC transporter J172_03339 PF07715 TonB-dependent Receptor Plug Domain J172_03339 PF00593 TonB dependent receptor J172_03341 PF00593 TonB dependent receptor J172_03341 PF07715 TonB-dependent Receptor Plug Domain J172_03342 PF00593 TonB dependent receptor J172_03342 PF07715 TonB-dependent Receptor Plug Domain J172_03343 PF00067 Cytochrome P450 J172_03344 PF00999 Sodium/hydrogen exchanger family J172_03344 PF02254 TrkA-N domain J172_03349 PF07715 TonB-dependent Receptor Plug Domain J172_03349 PF07660 Secretin and TonB N terminus short domain J172_03349 PF00593 TonB dependent receptor J172_03351 PF04183 IucA / IucC family J172_03351 PF06276 Ferric iron reductase FhuF-like transporter J172_03352 PF07690 Major Facilitator Superfamily J172_03354 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J172_03354 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J172_03357 PF02654 Cobalamin-5-phosphate synthase J172_03359 PF02277 Phosphoribosyltransferase J172_03360 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase J172_03361 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J172_03361 PF07685 CobB/CobQ-like glutamine amidotransferase domain J172_03362 PF00155 Aminotransferase class I and II J172_03363 PF17113 Regulatory signalling modulator protein AmpE J172_03363 PF03186 CobD/Cbib protein J172_03364 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP J172_03364 PF12557 Cob(I)alamin adenosyltransferase N terminal J172_03367 PF00593 TonB dependent receptor J172_03367 PF07715 TonB-dependent Receptor Plug Domain J172_03369 PF17871 AAA lid domain J172_03369 PF10431 C-terminal, D2-small domain, of ClpB protein J172_03369 PF02861 Clp amino terminal domain, pathogenicity island component J172_03369 PF00004 ATPase family associated with various cellular activities (AAA) J172_03369 PF07724 AAA domain (Cdc48 subfamily) J172_03370 PF00005 ABC transporter J172_03371 PF00528 Binding-protein-dependent transport system inner membrane component J172_03372 PF09084 NMT1/THI5 like J172_03373 PF00248 Aldo/keto reductase family J172_03375 PF07715 TonB-dependent Receptor Plug Domain J172_03375 PF00593 TonB dependent receptor J172_03376 PF01541 GIY-YIG catalytic domain J172_03383 PF00593 TonB dependent receptor J172_03383 PF07715 TonB-dependent Receptor Plug Domain J172_03384 PF02358 Trehalose-phosphatase J172_03385 PF00723 Glycosyl hydrolases family 15 J172_03386 PF00982 Glycosyltransferase family 20 J172_03387 PF01011 PQQ enzyme repeat J172_03388 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_03388 PF02203 Tar ligand binding domain homologue J172_03388 PF00672 HAMP domain J172_03389 PF04134 Protein of unknown function, DUF393 J172_03392 PF00849 RNA pseudouridylate synthase J172_03393 PF13525 Outer membrane lipoprotein J172_03395 PF02540 NAD synthase J172_03395 PF00795 Carbon-nitrogen hydrolase J172_03397 PF01527 Transposase J172_03401 PF13406 Transglycosylase SLT domain J172_03402 PF01526 Tn3 transposase DDE domain J172_03402 PF13700 Domain of unknown function (DUF4158) J172_03406 PF01129 NAD:arginine ADP-ribosyltransferase J172_03411 PF02629 CoA binding domain J172_03411 PF00549 CoA-ligase J172_03412 PF00549 CoA-ligase J172_03412 PF08442 ATP-grasp domain J172_03413 PF00512 His Kinase A (phospho-acceptor) domain J172_03413 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_03414 PF00072 Response regulator receiver domain J172_03414 PF00158 Sigma-54 interaction domain J172_03414 PF02954 Bacterial regulatory protein, Fis family J172_03416 PF00437 Type II/IV secretion system protein J172_03416 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J172_03417 PF00437 Type II/IV secretion system protein J172_03417 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J172_03418 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J172_03418 PF00437 Type II/IV secretion system protein J172_03419 PF00114 Pilin (bacterial filament) J172_03419 PF07963 Prokaryotic N-terminal methylation motif J172_03420 PF07963 Prokaryotic N-terminal methylation motif J172_03420 PF00114 Pilin (bacterial filament) J172_03421 PF00482 Type II secretion system (T2SS), protein F J172_03422 PF01478 Type IV leader peptidase family J172_03422 PF06750 Bacterial Peptidase A24 N-terminal domain J172_03423 PF01121 Dephospho-CoA kinase J172_03426 PF01527 Transposase J172_03427 PF13276 HTH-like domain J172_03427 PF00665 Integrase core domain J172_03427 PF13333 Integrase core domain J172_03428 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_03428 PF00512 His Kinase A (phospho-acceptor) domain J172_03428 PF00989 PAS fold J172_03428 PF16736 Single Cache-like J172_03429 PF00486 Transcriptional regulatory protein, C terminal J172_03429 PF00072 Response regulator receiver domain J172_03431 PF08443 RimK-like ATP-grasp domain J172_03431 PF18030 RimK PreATP-grasp domain J172_03432 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J172_03432 PF00128 Alpha amylase, catalytic domain J172_03445 PF04002 RadC-like JAB domain J172_03450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_03450 PF13426 PAS domain J172_03450 PF00072 Response regulator receiver domain J172_03451 PF13426 PAS domain J172_03451 PF00072 Response regulator receiver domain J172_03451 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_03457 PF01527 Transposase J172_03466 PF00072 Response regulator receiver domain J172_03466 PF13188 PAS domain J172_03466 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_03466 PF08448 PAS fold J172_03466 PF00512 His Kinase A (phospho-acceptor) domain J172_03470 PF13676 TIR domain J172_03474 PF00657 GDSL-like Lipase/Acylhydrolase J172_03474 PF03797 Autotransporter beta-domain J172_03476 PF05690 Thiazole biosynthesis protein ThiG J172_03477 PF02390 Putative methyltransferase J172_03478 PF03600 Citrate transporter J172_03478 PF02080 TrkA-C domain J172_03481 PF01557 Fumarylacetoacetate (FAA) hydrolase family J172_03482 PF01741 Large-conductance mechanosensitive channel, MscL J172_03484 PF00356 Bacterial regulatory proteins, lacI family J172_03486 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain J172_03486 PF02837 Glycosyl hydrolases family 2, sugar binding domain J172_03486 PF00703 Glycosyl hydrolases family 2 J172_03487 PF10566 Glycoside hydrolase 97 J172_03487 PF14508 Glycosyl-hydrolase 97 N-terminal J172_03487 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation J172_03489 PF00135 Carboxylesterase family J172_03490 PF00588 SpoU rRNA Methylase family J172_03490 PF08032 RNA 2'-O ribose methyltransferase substrate binding J172_03492 PF11838 ERAP1-like C-terminal domain J172_03492 PF01433 Peptidase family M1 domain J172_03495 PF01527 Transposase J172_03501 PF00873 AcrB/AcrD/AcrF family J172_03502 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J172_03502 PF00529 HlyD membrane-fusion protein of T1SS J172_03503 PF00009 Elongation factor Tu GTP binding domain J172_03504 PF01507 Phosphoadenosine phosphosulfate reductase family J172_03505 PF00667 FAD binding domain J172_03505 PF00175 Oxidoreductase NAD-binding domain J172_03505 PF00258 Flavodoxin J172_03506 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J172_03506 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J172_03507 PF01507 Phosphoadenosine phosphosulfate reductase family J172_03511 PF01627 Hpt domain J172_03511 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_03511 PF00512 His Kinase A (phospho-acceptor) domain J172_03511 PF00072 Response regulator receiver domain J172_03513 PF03466 LysR substrate binding domain J172_03513 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_03514 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J172_03514 PF14824 Sirohaem biosynthesis protein central J172_03514 PF10414 Sirohaem synthase dimerisation region J172_03515 PF00291 Pyridoxal-phosphate dependent enzyme J172_03517 PF01661 Macro domain J172_03518 PF00274 Fructose-bisphosphate aldolase class-I J172_03519 PF02887 Pyruvate kinase, alpha/beta domain J172_03519 PF00224 Pyruvate kinase, barrel domain J172_03521 PF00162 Phosphoglycerate kinase J172_03526 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J172_03526 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J172_03528 PF03922 OmpW family J172_03529 PF03922 OmpW family J172_03531 PF00753 Metallo-beta-lactamase superfamily J172_03531 PF04273 Putative phosphatase (DUF442) J172_03533 PF00528 Binding-protein-dependent transport system inner membrane component J172_03534 PF03459 TOBE domain J172_03534 PF00005 ABC transporter J172_03541 PF01476 LysM domain J172_03541 PF03734 L,D-transpeptidase catalytic domain J172_03542 PF04225 Opacity-associated protein A LysM-like domain J172_03542 PF01551 Peptidase family M23 J172_03544 PF07715 TonB-dependent Receptor Plug Domain J172_03544 PF00593 TonB dependent receptor J172_03545 PF12146 Serine aminopeptidase, S33 J172_03546 PF00456 Transketolase, thiamine diphosphate binding domain J172_03546 PF02780 Transketolase, C-terminal domain J172_03546 PF02779 Transketolase, pyrimidine binding domain J172_03547 PF00375 Sodium:dicarboxylate symporter family J172_03549 PF00092 von Willebrand factor type A domain J172_03549 PF07584 Aerotolerance regulator N-terminal J172_03553 PF07726 ATPase family associated with various cellular activities (AAA) J172_03553 PF17863 AAA lid domain J172_03555 PF11741 AMIN domain J172_03555 PF07660 Secretin and TonB N terminus short domain J172_03555 PF03958 Bacterial type II/III secretion system short domain J172_03555 PF00263 Bacterial type II and III secretion system protein J172_03560 PF17092 Penicillin-binding protein OB-like domain J172_03560 PF00905 Penicillin binding protein transpeptidase domain J172_03560 PF00912 Transglycosylase J172_03563 PF00285 Citrate synthase, C-terminal domain J172_03564 PF01197 Ribosomal protein L31 J172_03565 PF01156 Inosine-uridine preferring nucleoside hydrolase J172_03566 PF00270 DEAD/DEAH box helicase J172_03566 PF17191 RecG wedge domain J172_03566 PF00271 Helicase conserved C-terminal domain J172_03567 PF01042 Endoribonuclease L-PSP J172_03568 PF13291 ACT domain J172_03568 PF04607 Region found in RelA / SpoT proteins J172_03568 PF02824 TGS domain J172_03569 PF01192 RNA polymerase Rpb6 J172_03570 PF00625 Guanylate kinase J172_03571 PF03755 YicC-like family, N-terminal region J172_03571 PF08340 Domain of unknown function (DUF1732) J172_03572 PF01138 3' exoribonuclease family, domain 1 J172_03572 PF03725 3' exoribonuclease family, domain 2 J172_03574 PF01725 Ham1 family J172_03575 PF06969 HemN C-terminal domain J172_03575 PF04055 Radical SAM superfamily J172_03579 PF00557 Metallopeptidase family M24 J172_03581 PF00557 Metallopeptidase family M24 J172_03581 PF05195 Aminopeptidase P, N-terminal domain J172_03582 PF03695 Uncharacterised protein family (UPF0149) J172_03584 PF05164 Cell division protein ZapA J172_03586 PF01812 5-formyltetrahydrofolate cyclo-ligase family J172_03588 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J172_03590 PF13369 Transglutaminase-like superfamily J172_03591 PF00301 Rubredoxin J172_03592 PF02581 Thiamine monophosphate synthase J172_03595 PF00202 Aminotransferase class-III J172_03596 PF17874 MalT-like TPR region J172_03596 PF00196 Bacterial regulatory proteins, luxR family J172_03597 PF00127 Copper binding proteins, plastocyanin/azurin family J172_03598 PF00155 Aminotransferase class I and II J172_03600 PF00034 Cytochrome c J172_03600 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J172_03601 PF01593 Flavin containing amine oxidoreductase J172_03604 PF00202 Aminotransferase class-III J172_03605 PF00520 Ion transport protein J172_03605 PF00027 Cyclic nucleotide-binding domain J172_03608 PF01569 PAP2 superfamily J172_03609 PF01062 Bestrophin, RFP-TM, chloride channel J172_03611 PF02875 Mur ligase family, glutamate ligase domain J172_03611 PF08245 Mur ligase middle domain J172_03611 PF01225 Mur ligase family, catalytic domain J172_03613 PF00365 Phosphofructokinase J172_03615 PF03030 Inorganic H+ pyrophosphatase J172_03617 PF00719 Inorganic pyrophosphatase J172_03619 PF00593 TonB dependent receptor J172_03619 PF07715 TonB-dependent Receptor Plug Domain J172_03620 PF12833 Helix-turn-helix domain J172_03621 PF00486 Transcriptional regulatory protein, C terminal J172_03621 PF18500 CadC C-terminal domain 1 J172_03622 PF13667 ThiC-associated domain J172_03622 PF01964 Radical SAM ThiC family J172_03624 PF07715 TonB-dependent Receptor Plug Domain J172_03624 PF00593 TonB dependent receptor J172_03625 PF00672 HAMP domain J172_03625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_03625 PF02203 Tar ligand binding domain homologue J172_03627 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J172_03627 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J172_03628 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J172_03628 PF00205 Thiamine pyrophosphate enzyme, central domain J172_03628 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J172_03630 PF00291 Pyridoxal-phosphate dependent enzyme J172_03631 PF00682 HMGL-like J172_03631 PF08502 LeuA allosteric (dimerisation) domain J172_03632 PF00180 Isocitrate/isopropylmalate dehydrogenase J172_03633 PF00694 Aconitase C-terminal domain J172_03634 PF00330 Aconitase family (aconitate hydratase) J172_03635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_03636 PF17151 Periplasmic sensor domain J172_03636 PF00990 Diguanylate cyclase, GGDEF domain J172_03639 PF02321 Outer membrane efflux protein J172_03640 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) J172_03641 PF03279 Bacterial lipid A biosynthesis acyltransferase J172_03646 PF03949 Malic enzyme, NAD binding domain J172_03646 PF00390 Malic enzyme, N-terminal domain J172_03646 PF01515 Phosphate acetyl/butaryl transferase J172_03647 PF00375 Sodium:dicarboxylate symporter family J172_03649 PF02743 Cache domain J172_03649 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_03649 PF00512 His Kinase A (phospho-acceptor) domain J172_03650 PF07690 Major Facilitator Superfamily J172_03652 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_03652 PF03466 LysR substrate binding domain J172_03653 PF00248 Aldo/keto reductase family J172_03657 PF00072 Response regulator receiver domain J172_03657 PF00196 Bacterial regulatory proteins, luxR family J172_03659 PF00512 His Kinase A (phospho-acceptor) domain J172_03659 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_03659 PF08521 Two-component sensor kinase N-terminal J172_03660 PF00486 Transcriptional regulatory protein, C terminal J172_03660 PF00072 Response regulator receiver domain J172_03662 PF03600 Citrate transporter J172_03664 PF00106 short chain dehydrogenase J172_03665 PF00356 Bacterial regulatory proteins, lacI family J172_03668 PF00128 Alpha amylase, catalytic domain J172_03671 PF03193 RsgA GTPase J172_03675 PF07715 TonB-dependent Receptor Plug Domain J172_03675 PF00593 TonB dependent receptor J172_03676 PF01522 Polysaccharide deacetylase J172_03677 PF00462 Glutaredoxin J172_03680 PF01527 Transposase J172_03685 PF02645 Uncharacterised protein, DegV family COG1307 J172_03686 PF01327 Polypeptide deformylase J172_03687 PF03960 ArsC family J172_03690 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) J172_03691 PF01270 Glycosyl hydrolases family 8 J172_03692 PF03170 Bacterial cellulose synthase subunit J172_03693 PF07238 PilZ domain J172_03693 PF00535 Glycosyl transferase family 2 J172_03693 PF03552 Cellulose synthase J172_03697 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain J172_03697 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family J172_03705 PF07715 TonB-dependent Receptor Plug Domain J172_03705 PF00593 TonB dependent receptor J172_03707 PF00392 Bacterial regulatory proteins, gntR family J172_03707 PF07702 UTRA domain J172_03709 PF03958 Bacterial type II/III secretion system short domain J172_03709 PF00263 Bacterial type II and III secretion system protein J172_03711 PF10741 Type II secretion system (T2SS), protein M subtype b J172_03712 PF05137 Fimbrial assembly protein (PilN) J172_03713 PF03934 Type II secretion system (T2SS), protein K J172_03715 PF07963 Prokaryotic N-terminal methylation motif J172_03716 PF12019 Type II transport protein GspH J172_03717 PF08334 Type II secretion system (T2SS), protein G J172_03718 PF00482 Type II secretion system (T2SS), protein F J172_03719 PF00437 Type II/IV secretion system protein J172_03719 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J172_03720 PF00082 Subtilase family J172_03720 PF04151 Bacterial pre-peptidase C-terminal domain J172_03721 PF13018 Extended Signal Peptide of Type V secretion system J172_03721 PF03895 YadA-like membrane anchor domain J172_03721 PF05658 Head domain of trimeric autotransporter adhesin J172_03721 PF05662 Coiled stalk of trimeric autotransporter adhesin J172_03722 PF04151 Bacterial pre-peptidase C-terminal domain J172_03722 PF00082 Subtilase family J172_03723 PF13018 Extended Signal Peptide of Type V secretion system J172_03723 PF05658 Head domain of trimeric autotransporter adhesin J172_03723 PF03895 YadA-like membrane anchor domain J172_03723 PF05662 Coiled stalk of trimeric autotransporter adhesin J172_03724 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal J172_03724 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J172_03724 PF02769 AIR synthase related protein, C-terminal domain J172_03725 PF13098 Thioredoxin-like domain J172_03725 PF10411 Disulfide bond isomerase protein N-terminus J172_03726 PF02899 Phage integrase, N-terminal SAM-like domain J172_03726 PF00589 Phage integrase family J172_03729 PF03739 Lipopolysaccharide export system permease LptF/LptG J172_03731 PF00883 Cytosol aminopeptidase family, catalytic domain J172_03731 PF02789 Cytosol aminopeptidase family, N-terminal domain J172_03734 PF10458 Valyl tRNA synthetase tRNA binding arm J172_03734 PF00133 tRNA synthetases class I (I, L, M and V) J172_03734 PF08264 Anticodon-binding domain of tRNA J172_03735 PF00593 TonB dependent receptor J172_03735 PF07715 TonB-dependent Receptor Plug Domain J172_03736 PF01464 Transglycosylase SLT domain J172_03736 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J172_03737 PF00544 Pectate lyase J172_03740 PF01066 CDP-alcohol phosphatidyltransferase J172_03742 PF03129 Anticodon binding domain J172_03742 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J172_03742 PF04073 Aminoacyl-tRNA editing domain J172_03743 PF00816 H-NS histone family J172_03745 PF02405 Permease MlaE J172_03746 PF00005 ABC transporter J172_03747 PF02470 MlaD protein J172_03747 PF03886 ABC-type transport auxiliary lipoprotein component J172_03751 PF05045 Rhamnan synthesis protein F J172_03751 PF14307 Glycosyltransferase WbsX J172_03752 PF01144 Coenzyme A transferase J172_03753 PF01144 Coenzyme A transferase J172_03754 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J172_03754 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J172_03754 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J172_03754 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J172_03755 PF00483 Nucleotidyl transferase J172_03755 PF01050 Mannose-6-phosphate isomerase J172_03756 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J172_03756 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J172_03756 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J172_03757 PF04321 RmlD substrate binding domain J172_03758 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase J172_03759 PF00483 Nucleotidyl transferase J172_03760 PF16363 GDP-mannose 4,6 dehydratase J172_03761 PF01012 Electron transfer flavoprotein domain J172_03762 PF01012 Electron transfer flavoprotein domain J172_03762 PF00766 Electron transfer flavoprotein FAD-binding domain J172_03764 PF01040 UbiA prenyltransferase family J172_03765 PF04030 D-arabinono-1,4-lactone oxidase J172_03765 PF01565 FAD binding domain J172_03766 PF00106 short chain dehydrogenase J172_03768 PF01370 NAD dependent epimerase/dehydratase family J172_03769 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J172_03769 PF07992 Pyridine nucleotide-disulphide oxidoreductase J172_03774 PF00535 Glycosyl transferase family 2 J172_03776 PF00005 ABC transporter J172_03776 PF14524 Wzt C-terminal domain J172_03778 PF01053 Cys/Met metabolism PLP-dependent enzyme J172_03779 PF00571 CBS domain J172_03779 PF00291 Pyridoxal-phosphate dependent enzyme J172_03783 PF00437 Type II/IV secretion system protein J172_03784 PF14497 Glutathione S-transferase, C-terminal domain J172_03784 PF02798 Glutathione S-transferase, N-terminal domain J172_03786 PF00271 Helicase conserved C-terminal domain J172_03786 PF00270 DEAD/DEAH box helicase J172_03789 PF00593 TonB dependent receptor J172_03789 PF07715 TonB-dependent Receptor Plug Domain J172_03790 PF01242 6-pyruvoyl tetrahydropterin synthase J172_03793 PF13185 GAF domain J172_03795 PF00756 Putative esterase J172_03796 PF07715 TonB-dependent Receptor Plug Domain J172_03796 PF00593 TonB dependent receptor J172_03797 PF13419 Haloacid dehalogenase-like hydrolase J172_03798 PF11799 impB/mucB/samB family C-terminal domain J172_03798 PF00817 impB/mucB/samB family J172_03799 PF07977 FabA-like domain J172_03800 PF02801 Beta-ketoacyl synthase, C-terminal domain J172_03800 PF00109 Beta-ketoacyl synthase, N-terminal domain J172_03802 PF01432 Peptidase family M3 J172_03805 PF00394 Multicopper oxidase J172_03805 PF07731 Multicopper oxidase J172_03805 PF07732 Multicopper oxidase J172_03806 PF05275 Copper resistance protein B precursor (CopB) J172_03807 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J172_03813 PF01380 SIS domain J172_03814 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J172_03815 PF00005 ABC transporter J172_03815 PF12704 MacB-like periplasmic core domain J172_03815 PF02687 FtsX-like permease family J172_03816 PF12704 MacB-like periplasmic core domain J172_03816 PF02687 FtsX-like permease family J172_03816 PF00005 ABC transporter J172_03817 PF02687 FtsX-like permease family J172_03817 PF12704 MacB-like periplasmic core domain J172_03819 PF00072 Response regulator receiver domain J172_03819 PF00158 Sigma-54 interaction domain J172_03820 PF00132 Bacterial transferase hexapeptide (six repeats) J172_03820 PF12804 MobA-like NTP transferase domain J172_03820 PF14602 Hexapeptide repeat of succinyl-transferase J172_03823 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J172_03823 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J172_03824 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J172_03824 PF02874 ATP synthase alpha/beta family, beta-barrel domain J172_03825 PF00231 ATP synthase J172_03826 PF02874 ATP synthase alpha/beta family, beta-barrel domain J172_03826 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J172_03826 PF00306 ATP synthase alpha/beta chain, C terminal domain J172_03827 PF00213 ATP synthase delta (OSCP) subunit J172_03828 PF00430 ATP synthase B/B' CF(0) J172_03829 PF00137 ATP synthase subunit C J172_03830 PF00119 ATP synthase A chain J172_03834 PF07992 Pyridine nucleotide-disulphide oxidoreductase J172_03834 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J172_03836 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J172_03836 PF00364 Biotin-requiring enzyme J172_03836 PF02817 e3 binding domain J172_03842 PF03180 NLPA lipoprotein J172_03843 PF00528 Binding-protein-dependent transport system inner membrane component J172_03844 PF00005 ABC transporter J172_03844 PF09383 NIL domain J172_03845 PF00892 EamA-like transporter family J172_03846 PF04461 Protein of unknown function (DUF520) J172_03848 PF00989 PAS fold J172_03848 PF00072 Response regulator receiver domain J172_03848 PF00512 His Kinase A (phospho-acceptor) domain J172_03848 PF01627 Hpt domain J172_03848 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_03848 PF18415 Histidine kinase receptor ArcB trans-membrane domain J172_03852 PF13419 Haloacid dehalogenase-like hydrolase J172_03853 PF01479 S4 domain J172_03853 PF00849 RNA pseudouridylate synthase J172_03854 PF08468 Methyltransferase small domain N-terminal J172_03854 PF05175 Methyltransferase small domain J172_03856 PF07995 Glucose / Sorbosone dehydrogenase J172_03858 PF00989 PAS fold J172_03858 PF00512 His Kinase A (phospho-acceptor) domain J172_03858 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_03862 PF01168 Alanine racemase, N-terminal domain J172_03862 PF00842 Alanine racemase, C-terminal domain J172_03863 PF01266 FAD dependent oxidoreductase J172_03864 PF01037 Lrp/AsnC ligand binding domain J172_03866 PF01641 SelR domain J172_03868 PF01618 MotA/TolQ/ExbB proton channel family J172_03869 PF13677 Membrane MotB of proton-channel complex MotA/MotB J172_03869 PF00691 OmpA family J172_03874 PF01061 ABC-2 type transporter J172_03875 PF00005 ABC transporter J172_03876 PF00999 Sodium/hydrogen exchanger family J172_03877 PF02469 Fasciclin domain J172_03878 PF03167 Uracil DNA glycosylase superfamily J172_03880 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J172_03882 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_03882 PF03466 LysR substrate binding domain J172_03883 PF03358 NADPH-dependent FMN reductase J172_03884 PF00248 Aldo/keto reductase family J172_03886 PF05649 Peptidase family M13 J172_03886 PF01431 Peptidase family M13 J172_03890 PF13520 Amino acid permease J172_03892 PF00072 Response regulator receiver domain J172_03892 PF04397 LytTr DNA-binding domain J172_03893 PF00672 HAMP domain J172_03893 PF02743 Cache domain J172_03893 PF06580 Histidine kinase J172_03893 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_03896 PF05974 Domain of unknown function (DUF892) J172_03897 PF05067 Manganese containing catalase J172_03900 PF08448 PAS fold J172_03900 PF01339 CheB methylesterase J172_03900 PF01739 CheR methyltransferase, SAM binding domain J172_03900 PF03705 CheR methyltransferase, all-alpha domain J172_03903 PF00158 Sigma-54 interaction domain J172_03903 PF00072 Response regulator receiver domain J172_03903 PF02954 Bacterial regulatory protein, Fis family J172_03905 PF01654 Cytochrome bd terminal oxidase subunit I J172_03906 PF02322 Cytochrome bd terminal oxidase subunit II J172_03910 PF16363 GDP-mannose 4,6 dehydratase J172_03912 PF03275 UDP-galactopyranose mutase J172_03914 PF00664 ABC transporter transmembrane region J172_03914 PF00005 ABC transporter J172_03917 PF13823 Alcohol dehydrogenase GroES-associated J172_03917 PF00107 Zinc-binding dehydrogenase J172_03917 PF08240 Alcohol dehydrogenase GroES-like domain J172_03926 PF00593 TonB dependent receptor J172_03926 PF07715 TonB-dependent Receptor Plug Domain J172_03929 PF00005 ABC transporter J172_03931 PF03466 LysR substrate binding domain J172_03931 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_03932 PF01042 Endoribonuclease L-PSP J172_03934 PF01527 Transposase J172_03938 PF00672 HAMP domain J172_03938 PF02203 Tar ligand binding domain homologue J172_03938 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J172_03941 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_03941 PF03466 LysR substrate binding domain J172_03942 PF02525 Flavodoxin-like fold J172_03951 PF00557 Metallopeptidase family M24 J172_03956 PF04539 Sigma-70 region 3 J172_03956 PF04542 Sigma-70 region 2 J172_03956 PF00140 Sigma-70 factor, region 1.2 J172_03956 PF03979 Sigma-70 factor, region 1.1 J172_03956 PF04546 Sigma-70, non-essential region J172_03956 PF04545 Sigma-70, region 4 J172_03957 PF02580 D-Tyr-tRNA(Tyr) deacylase J172_03958 PF03279 Bacterial lipid A biosynthesis acyltransferase J172_03960 PF00925 GTP cyclohydrolase II J172_03964 PF00535 Glycosyl transferase family 2 J172_03967 PF01189 16S rRNA methyltransferase RsmB/F J172_03967 PF01029 NusB family J172_03968 PF02911 Formyl transferase, C-terminal domain J172_03968 PF00551 Formyl transferase J172_03969 PF01327 Polypeptide deformylase J172_03970 PF01476 LysM domain J172_03971 PF02481 DNA recombination-mediator protein A J172_03971 PF17782 DprA winged helix domain J172_03972 PF04361 Protein of unknown function (DUF494) J172_03973 PF07963 Prokaryotic N-terminal methylation motif J172_03973 PF00114 Pilin (bacterial filament) J172_03975 PF01751 Toprim domain J172_03975 PF13368 Topoisomerase C-terminal repeat J172_03975 PF01131 DNA topoisomerase J172_03976 PF01300 Telomere recombination J172_03981 PF01343 Peptidase family S49 J172_03982 PF01554 MatE J172_03986 PF00270 DEAD/DEAH box helicase J172_03986 PF17764 3′ DNA-binding domain (3′BD) J172_03986 PF18074 Primosomal protein N C-terminal domain J172_03986 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J172_03986 PF00271 Helicase conserved C-terminal domain J172_03987 PF13417 Glutathione S-transferase, N-terminal domain J172_03987 PF00043 Glutathione S-transferase, C-terminal domain J172_03990 PF07992 Pyridine nucleotide-disulphide oxidoreductase J172_03991 PF03458 UPF0126 domain J172_03992 PF04542 Sigma-70 region 2 J172_03992 PF04545 Sigma-70, region 4 J172_03993 PF03167 Uracil DNA glycosylase superfamily J172_03994 PF01339 CheB methylesterase J172_03994 PF00072 Response regulator receiver domain J172_03995 PF18075 FtsX extracellular domain J172_03996 PF00005 ABC transporter J172_03997 PF00271 Helicase conserved C-terminal domain J172_03997 PF00270 DEAD/DEAH box helicase J172_03997 PF12300 ATP-dependent RNA helicase RhlB J172_03998 PF00085 Thioredoxin J172_03999 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J172_03999 PF07498 Rho termination factor, N-terminal domain J172_03999 PF07497 Rho termination factor, RNA-binding domain J172_04000 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) J172_04001 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_04001 PF03466 LysR substrate binding domain J172_04003 PF03971 Monomeric isocitrate dehydrogenase J172_04006 PF09704 CRISPR-associated protein (Cas_Cas5) J172_04011 PF01867 CRISPR associated protein Cas1 J172_04012 PF09827 CRISPR associated protein Cas2 J172_04014 PF04972 BON domain J172_04014 PF01476 LysM domain J172_04015 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J172_04015 PF14489 QueF-like protein J172_04016 PF07687 Peptidase dimerisation domain J172_04016 PF01546 Peptidase family M20/M25/M40 J172_04017 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J172_04018 PF00873 AcrB/AcrD/AcrF family J172_04019 PF00873 AcrB/AcrD/AcrF family J172_04020 PF07063 Domain of unknown function (DUF1338) J172_04028 PF01427 D-ala-D-ala dipeptidase J172_04029 PF01510 N-acetylmuramoyl-L-alanine amidase J172_04031 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J172_04031 PF13378 Enolase C-terminal domain-like J172_04033 PF13520 Amino acid permease J172_04036 PF05360 yiaA/B two helix domain J172_04037 PF07995 Glucose / Sorbosone dehydrogenase J172_04038 PF01915 Glycosyl hydrolase family 3 C-terminal domain J172_04038 PF00933 Glycosyl hydrolase family 3 N terminal domain J172_04038 PF14310 Fibronectin type III-like domain J172_04039 PF02152 Dihydroneopterin aldolase J172_04040 PF00814 Glycoprotease family J172_04041 PF01165 Ribosomal protein S21 J172_04042 PF09424 Yqey-like protein J172_04043 PF03631 Virulence factor BrkB J172_04044 PF08275 DNA primase catalytic core, N-terminal domain J172_04044 PF01807 CHC2 zinc finger J172_04044 PF10410 DnaB-helicase binding domain of primase J172_04044 PF08278 DNA primase DnaG DnaB-binding J172_04045 PF13593 SBF-like CPA transporter family (DUF4137) J172_04047 PF01040 UbiA prenyltransferase family J172_04052 PF00510 Cytochrome c oxidase subunit III J172_04053 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 J172_04055 PF00115 Cytochrome C and Quinol oxidase polypeptide I J172_04056 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J172_04056 PF02790 Cytochrome C oxidase subunit II, transmembrane domain J172_04058 PF00171 Aldehyde dehydrogenase family J172_04058 PF01619 Proline dehydrogenase J172_04058 PF14850 DNA-binding domain of Proline dehydrogenase J172_04058 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J172_04066 PF00579 tRNA synthetases class I (W and Y) J172_04067 PF01551 Peptidase family M23 J172_04067 PF04225 Opacity-associated protein A LysM-like domain J172_04068 PF03702 Anhydro-N-acetylmuramic acid kinase J172_04070 PF07690 Major Facilitator Superfamily J172_04071 PF03372 Endonuclease/Exonuclease/phosphatase family J172_04072 PF00156 Phosphoribosyl transferase domain J172_04074 PF13614 AAA domain J172_04075 PF02195 ParB-like nuclease domain J172_04075 PF17762 HTH domain found in ParB protein J172_04077 PF01370 NAD dependent epimerase/dehydratase family J172_04078 PF00535 Glycosyl transferase family 2 J172_04081 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J172_04081 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J172_04081 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J172_04081 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J172_04082 PF00692 dUTPase J172_04083 PF02441 Flavoprotein J172_04083 PF04127 DNA / pantothenate metabolism flavoprotein J172_04084 PF04002 RadC-like JAB domain J172_04085 PF03485 Arginyl tRNA synthetase N terminal domain J172_04085 PF05746 DALR anticodon binding domain J172_04085 PF00750 tRNA synthetases class I (R) J172_04088 PF00106 short chain dehydrogenase J172_04089 PF01757 Acyltransferase family J172_04090 PF03033 Glycosyltransferase family 28 N-terminal domain J172_04091 PF00668 Condensation domain J172_04091 PF00975 Thioesterase domain J172_04091 PF00501 AMP-binding enzyme J172_04091 PF00550 Phosphopantetheine attachment site J172_04091 PF13193 AMP-binding enzyme C-terminal domain J172_04092 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J172_04092 PF17810 Arginine decarboxylase helical bundle domain J172_04092 PF17944 Arginine decarboxylase C-terminal helical extension J172_04093 PF17284 Spermidine synthase tetramerisation domain J172_04098 PF00543 Nitrogen regulatory protein P-II J172_04099 PF04380 Membrane fusogenic activity J172_04100 PF13335 Magnesium chelatase, subunit ChlI C-terminal J172_04100 PF01078 Magnesium chelatase, subunit ChlI J172_04106 PF13276 HTH-like domain J172_04106 PF13683 Integrase core domain J172_04110 PF13361 UvrD-like helicase C-terminal domain J172_04110 PF00580 UvrD/REP helicase N-terminal domain J172_04110 PF00570 HRDC domain J172_04113 PF01527 Transposase J172_04114 PF02463 RecF/RecN/SMC N terminal domain J172_04123 PF13335 Magnesium chelatase, subunit ChlI C-terminal J172_04123 PF01078 Magnesium chelatase, subunit ChlI J172_04126 PF12792 CSS motif domain associated with EAL J172_04126 PF00563 EAL domain J172_04127 PF00487 Fatty acid desaturase J172_04128 PF00111 2Fe-2S iron-sulfur cluster binding domain J172_04128 PF00175 Oxidoreductase NAD-binding domain J172_04128 PF00970 Oxidoreductase FAD-binding domain J172_04129 PF00440 Bacterial regulatory proteins, tetR family J172_04135 PF01139 tRNA-splicing ligase RtcB J172_04143 PF08338 Domain of unknown function (DUF1731) J172_04143 PF01370 NAD dependent epimerase/dehydratase family J172_04144 PF00072 Response regulator receiver domain J172_04144 PF00486 Transcriptional regulatory protein, C terminal J172_04145 PF00512 His Kinase A (phospho-acceptor) domain J172_04145 PF08521 Two-component sensor kinase N-terminal J172_04145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_04149 PF00595 PDZ domain J172_04153 PF01594 AI-2E family transporter J172_04154 PF13419 Haloacid dehalogenase-like hydrolase J172_04155 PF00883 Cytosol aminopeptidase family, catalytic domain J172_04155 PF02789 Cytosol aminopeptidase family, N-terminal domain J172_04157 PF08281 Sigma-70, region 4 J172_04157 PF04542 Sigma-70 region 2 J172_04158 PF00199 Catalase J172_04161 PF00072 Response regulator receiver domain J172_04161 PF00196 Bacterial regulatory proteins, luxR family J172_04162 PF07730 Histidine kinase J172_04163 PF13533 Biotin-lipoyl like J172_04164 PF00005 ABC transporter J172_04168 PF00892 EamA-like transporter family J172_04169 PF00892 EamA-like transporter family J172_04170 PF00892 EamA-like transporter family J172_04173 PF00753 Metallo-beta-lactamase superfamily J172_04174 PF00579 tRNA synthetases class I (W and Y) J172_04175 PF05532 CsbD-like J172_04178 PF00491 Arginase family J172_04183 PF02223 Thymidylate kinase J172_04186 PF03309 Type III pantothenate kinase J172_04187 PF02237 Biotin protein ligase C terminal domain J172_04187 PF03099 Biotin/lipoate A/B protein ligase family J172_04187 PF08279 HTH domain J172_04189 PF06167 Glucose-regulated metallo-peptidase M90 J172_04192 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_04192 PF00512 His Kinase A (phospho-acceptor) domain J172_04192 PF00672 HAMP domain J172_04193 PF00072 Response regulator receiver domain J172_04193 PF00486 Transcriptional regulatory protein, C terminal J172_04195 PF01207 Dihydrouridine synthase (Dus) J172_04198 PF00199 Catalase J172_04198 PF06628 Catalase-related immune-responsive J172_04199 PF13307 Helicase C-terminal domain J172_04199 PF06733 DEAD_2 J172_04202 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J172_04202 PF01488 Shikimate / quinate 5-dehydrogenase J172_04202 PF08501 Shikimate dehydrogenase substrate binding domain J172_04204 PF00175 Oxidoreductase NAD-binding domain J172_04204 PF00258 Flavodoxin J172_04204 PF00667 FAD binding domain J172_04206 PF03466 LysR substrate binding domain J172_04206 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_04208 PF00490 Delta-aminolevulinic acid dehydratase J172_04212 PF00326 Prolyl oligopeptidase family J172_04212 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J172_04213 PF00043 Glutathione S-transferase, C-terminal domain J172_04213 PF02798 Glutathione S-transferase, N-terminal domain J172_04217 PF04820 Tryptophan halogenase J172_04220 PF00005 ABC transporter J172_04222 PF01381 Helix-turn-helix J172_04224 PF01229 Glycosyl hydrolases family 39 J172_04225 PF02583 Metal-sensitive transcriptional repressor J172_04226 PF01545 Cation efflux family J172_04226 PF16916 Dimerisation domain of Zinc Transporter J172_04228 PF00593 TonB dependent receptor J172_04228 PF07715 TonB-dependent Receptor Plug Domain J172_04230 PF12833 Helix-turn-helix domain J172_04230 PF01965 DJ-1/PfpI family J172_04231 PF00111 2Fe-2S iron-sulfur cluster binding domain J172_04231 PF00970 Oxidoreductase FAD-binding domain J172_04231 PF00175 Oxidoreductase NAD-binding domain J172_04232 PF00005 ABC transporter J172_04233 PF01061 ABC-2 type transporter J172_04236 PF08546 Ketopantoate reductase PanE/ApbA C terminal J172_04236 PF02558 Ketopantoate reductase PanE/ApbA J172_04242 PF00268 Ribonucleotide reductase, small chain J172_04243 PF02867 Ribonucleotide reductase, barrel domain J172_04243 PF00317 Ribonucleotide reductase, all-alpha domain J172_04243 PF03477 ATP cone domain J172_04245 PF13607 Succinyl-CoA ligase like flavodoxin domain J172_04245 PF00583 Acetyltransferase (GNAT) family J172_04245 PF13380 CoA binding domain J172_04246 PF00571 CBS domain J172_04246 PF01769 Divalent cation transporter J172_04246 PF03448 MgtE intracellular N domain J172_04247 PF00194 Eukaryotic-type carbonic anhydrase J172_04248 PF00999 Sodium/hydrogen exchanger family J172_04248 PF02254 TrkA-N domain J172_04249 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J172_04249 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J172_04250 PF00723 Glycosyl hydrolases family 15 J172_04253 PF05166 YcgL domain J172_04254 PF02801 Beta-ketoacyl synthase, C-terminal domain J172_04254 PF00109 Beta-ketoacyl synthase, N-terminal domain J172_04256 PF00535 Glycosyl transferase family 2 J172_04267 PF07977 FabA-like domain J172_04268 PF01553 Acyltransferase J172_04270 PF00550 Phosphopantetheine attachment site J172_04271 PF04820 Tryptophan halogenase J172_04275 PF07676 WD40-like Beta Propeller Repeat J172_04275 PF00326 Prolyl oligopeptidase family J172_04278 PF01218 Coproporphyrinogen III oxidase J172_04279 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J172_04279 PF00476 DNA polymerase family A J172_04279 PF01367 5'-3' exonuclease, C-terminal SAM fold J172_04279 PF01612 3'-5' exonuclease J172_04285 PF00069 Protein kinase domain J172_04285 PF03793 PASTA domain J172_04293 PF04717 Type VI secretion system, phage-baseplate injector J172_04296 PF00069 Protein kinase domain J172_04296 PF03793 PASTA domain J172_04298 PF04542 Sigma-70 region 2 J172_04298 PF08281 Sigma-70, region 4 J172_04301 PF00328 Histidine phosphatase superfamily (branch 2) J172_04308 PF00004 ATPase family associated with various cellular activities (AAA) J172_04308 PF17871 AAA lid domain J172_04308 PF07724 AAA domain (Cdc48 subfamily) J172_04308 PF10431 C-terminal, D2-small domain, of ClpB protein J172_04313 PF05638 Type VI secretion system effector, Hcp J172_04318 PF12464 Maltose acetyltransferase J172_04318 PF14602 Hexapeptide repeat of succinyl-transferase J172_04319 PF13361 UvrD-like helicase C-terminal domain J172_04319 PF00580 UvrD/REP helicase N-terminal domain J172_04321 PF13091 PLD-like domain J172_04321 PF13396 Phospholipase_D-nuclease N-terminal J172_04322 PF03466 LysR substrate binding domain J172_04322 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_04323 PF03737 Aldolase/RraA J172_04324 PF04303 PrpF protein J172_04325 PF04909 Amidohydrolase J172_04326 PF00471 Ribosomal protein L33 J172_04327 PF00830 Ribosomal L28 family J172_04328 PF00873 AcrB/AcrD/AcrF family J172_04329 PF13533 Biotin-lipoyl like J172_04333 PF02527 rRNA small subunit methyltransferase G J172_04334 PF09423 PhoD-like phosphatase J172_04334 PF16655 PhoD-like phosphatase, N-terminal domain J172_04336 PF09423 PhoD-like phosphatase J172_04336 PF16655 PhoD-like phosphatase, N-terminal domain J172_04337 PF01648 4'-phosphopantetheinyl transferase superfamily J172_04338 PF04226 Transglycosylase associated protein J172_04340 PF03372 Endonuclease/Exonuclease/phosphatase family J172_04342 PF00480 ROK family J172_04344 PF09312 SurA N-terminal domain J172_04346 PF00474 Sodium:solute symporter family J172_04347 PF04341 Protein of unknown function, DUF485 J172_04349 PF13193 AMP-binding enzyme C-terminal domain J172_04349 PF16177 Acetyl-coenzyme A synthetase N-terminus J172_04349 PF00501 AMP-binding enzyme J172_04350 PF00072 Response regulator receiver domain J172_04350 PF00196 Bacterial regulatory proteins, luxR family J172_04355 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J172_04355 PF04616 Glycosyl hydrolases family 43 J172_04356 PF00248 Aldo/keto reductase family J172_04359 PF01557 Fumarylacetoacetate (FAA) hydrolase family J172_04360 PF13378 Enolase C-terminal domain-like J172_04360 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J172_04362 PF05336 L-rhamnose mutarotase J172_04363 PF07690 Major Facilitator Superfamily J172_04364 PF01614 Bacterial transcriptional regulator J172_04364 PF09339 IclR helix-turn-helix domain J172_04365 PF02659 Putative manganese efflux pump J172_04366 PF00512 His Kinase A (phospho-acceptor) domain J172_04366 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_04368 PF06165 Glycosyltransferase family 36 J172_04368 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J172_04371 PF01011 PQQ enzyme repeat J172_04371 PF13360 PQQ-like domain J172_04371 PF13570 PQQ-like domain J172_04375 PF04357 TamB, inner membrane protein subunit of TAM complex J172_04376 PF17243 POTRA domain TamA domain 1 J172_04376 PF01103 Surface antigen J172_04379 PF01527 Transposase J172_04381 PF00005 ABC transporter J172_04381 PF00664 ABC transporter transmembrane region J172_04381 PF03412 Peptidase C39 family J172_04383 PF05746 DALR anticodon binding domain J172_04383 PF02092 Glycyl-tRNA synthetase beta subunit J172_04384 PF02091 Glycyl-tRNA synthetase alpha subunit J172_04385 PF00437 Type II/IV secretion system protein J172_04385 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J172_04387 PF00958 GMP synthase C terminal domain J172_04387 PF00117 Glutamine amidotransferase class-I J172_04389 PF00902 Sec-independent protein translocase protein (TatC) J172_04390 PF02416 mttA/Hcf106 family J172_04391 PF02416 mttA/Hcf106 family J172_04393 PF00762 Ferrochelatase J172_04394 PF12697 Alpha/beta hydrolase family J172_04396 PF04381 Putative exonuclease, RdgC J172_04397 PF01171 PP-loop family J172_04399 PF00356 Bacterial regulatory proteins, lacI family J172_04400 PF07488 Glycosyl hydrolase family 67 middle domain J172_04400 PF03648 Glycosyl hydrolase family 67 N-terminus J172_04400 PF07477 Glycosyl hydrolase family 67 C-terminus J172_04402 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J172_04402 PF13378 Enolase C-terminal domain-like J172_04403 PF04616 Glycosyl hydrolases family 43 J172_04403 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J172_04404 PF01915 Glycosyl hydrolase family 3 C-terminal domain J172_04404 PF14310 Fibronectin type III-like domain J172_04404 PF07691 PA14 domain J172_04404 PF00933 Glycosyl hydrolase family 3 N terminal domain J172_04405 PF01232 Mannitol dehydrogenase Rossmann domain J172_04405 PF08125 Mannitol dehydrogenase C-terminal domain J172_04410 PF00171 Aldehyde dehydrogenase family J172_04413 PF00202 Aminotransferase class-III J172_04414 PF00202 Aminotransferase class-III J172_04416 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J172_04416 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J172_04419 PF08450 SMP-30/Gluconolactonase/LRE-like region J172_04420 PF00331 Glycosyl hydrolase family 10 J172_04421 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J172_04421 PF16355 Domain of unknown function (DUF4982) J172_04421 PF00703 Glycosyl hydrolases family 2 J172_04421 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J172_04421 PF02837 Glycosyl hydrolases family 2, sugar binding domain J172_04422 PF02614 Glucuronate isomerase J172_04423 PF03422 Carbohydrate binding module (family 6) J172_04423 PF00553 Cellulose binding domain J172_04423 PF00331 Glycosyl hydrolase family 10 J172_04425 PF00553 Cellulose binding domain J172_04425 PF03422 Carbohydrate binding module (family 6) J172_04425 PF00331 Glycosyl hydrolase family 10 J172_04429 PF04616 Glycosyl hydrolases family 43 J172_04439 PF00550 Phosphopantetheine attachment site J172_04439 PF08659 KR domain J172_04439 PF02801 Beta-ketoacyl synthase, C-terminal domain J172_04439 PF00698 Acyl transferase domain J172_04439 PF16197 Ketoacyl-synthetase C-terminal extension J172_04439 PF08240 Alcohol dehydrogenase GroES-like domain J172_04439 PF00107 Zinc-binding dehydrogenase J172_04439 PF00109 Beta-ketoacyl synthase, N-terminal domain J172_04439 PF14765 Polyketide synthase dehydratase J172_04440 PF01553 Acyltransferase J172_04442 PF00356 Bacterial regulatory proteins, lacI family J172_04445 PF04820 Tryptophan halogenase J172_04446 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J172_04447 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) J172_04449 PF04337 Protein of unknown function, DUF480 J172_04452 PF13361 UvrD-like helicase C-terminal domain J172_04452 PF00580 UvrD/REP helicase N-terminal domain J172_04453 PF00265 Thymidine kinase J172_04454 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J172_04454 PF00360 Phytochrome region J172_04454 PF08446 PAS fold J172_04454 PF00512 His Kinase A (phospho-acceptor) domain J172_04454 PF01590 GAF domain J172_04455 PF04349 Periplasmic glucan biosynthesis protein, MdoG J172_04457 PF06827 Zinc finger found in FPG and IleRS J172_04457 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J172_04457 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J172_04464 PF03594 Benzoate membrane transport protein J172_04465 PF00360 Phytochrome region J172_04465 PF01590 GAF domain J172_04465 PF08446 PAS fold J172_04465 PF13426 PAS domain J172_04466 PF01126 Heme oxygenase J172_04467 PF07690 Major Facilitator Superfamily J172_04468 PF01263 Aldose 1-epimerase J172_04470 PF02810 SEC-C motif J172_04471 PF01925 Sulfite exporter TauE/SafE J172_04475 PF01227 GTP cyclohydrolase I J172_04477 PF07869 Protein of unknown function (DUF1656) J172_04478 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J172_04478 PF00529 HlyD membrane-fusion protein of T1SS J172_04479 PF02321 Outer membrane efflux protein J172_04480 PF04632 Fusaric acid resistance protein family J172_04481 PF00083 Sugar (and other) transporter J172_04482 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family J172_04483 PF13396 Phospholipase_D-nuclease N-terminal J172_04483 PF13091 PLD-like domain J172_04488 PF01850 PIN domain J172_04493 PF00849 RNA pseudouridylate synthase J172_04495 PF01527 Transposase J172_04499 PF02785 Biotin carboxylase C-terminal domain J172_04499 PF00289 Biotin carboxylase, N-terminal domain J172_04499 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J172_04500 PF01425 Amidase J172_04507 PF13538 UvrD-like helicase C-terminal domain J172_04510 PF00580 UvrD/REP helicase N-terminal domain J172_04510 PF13361 UvrD-like helicase C-terminal domain J172_04510 PF12705 PD-(D/E)XK nuclease superfamily J172_04511 PF17946 RecC C-terminal domain J172_04513 PF00005 ABC transporter J172_04514 PF02405 Permease MlaE J172_04515 PF02470 MlaD protein J172_04516 PF05494 MlaC protein J172_04518 PF04333 MlaA lipoprotein J172_04520 PF00255 Glutathione peroxidase J172_04522 PF02646 RmuC family J172_04523 PF08240 Alcohol dehydrogenase GroES-like domain J172_04523 PF00107 Zinc-binding dehydrogenase J172_04524 PF03466 LysR substrate binding domain J172_04524 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J172_04526 PF13417 Glutathione S-transferase, N-terminal domain J172_04526 PF00043 Glutathione S-transferase, C-terminal domain J172_04528 PF13520 Amino acid permease J172_04529 PF07971 Glycosyl hydrolase family 92 J172_04529 PF17678 Glycosyl hydrolase family 92 N-terminal domain J172_04530 PF10947 Protein of unknown function (DUF2628) J172_04531 PF00990 Diguanylate cyclase, GGDEF domain J172_04532 PF13556 PucR C-terminal helix-turn-helix domain J172_04532 PF17853 GGDEF-like domain J172_04532 PF05651 Putative sugar diacid recognition J172_04533 PF02595 Glycerate kinase family J172_04534 PF07690 Major Facilitator Superfamily J172_04537 PF10672 S-adenosylmethionine-dependent methyltransferase J172_04537 PF17785 PUA-like domain J172_04539 PF03741 Integral membrane protein TerC family J172_04540 PF01694 Rhomboid family J172_04541 PF03009 Glycerophosphoryl diester phosphodiesterase family J172_04543 PF01569 PAP2 superfamily J172_04544 PF01926 50S ribosome-binding GTPase J172_04544 PF10396 GTP-binding protein TrmE N-terminus J172_04544 PF12631 MnmE helical domain J172_04545 PF01522 Polysaccharide deacetylase J172_04546 PF02096 60Kd inner membrane protein J172_04546 PF14849 YidC periplasmic domain J172_04547 PF00825 Ribonuclease P J172_04548 PF00468 Ribosomal protein L34