J172_00001 SM00966 SpoVT / AbrB like domain J172_00023 SM00857 Resolvase, N terminal domain J172_00030 SM00670 Large family of predicted nucleotide-binding domains J172_00032 SM00857 Resolvase, N terminal domain J172_00088 SM00470 ParB-like nuclease domain J172_00095 SM00857 Resolvase, N terminal domain J172_00101 SM00670 Large family of predicted nucleotide-binding domains J172_00103 SM00857 Resolvase, N terminal domain J172_00104 SM00382 ATPases associated with a variety of cellular activities J172_00104 SM00760 Bacterial dnaA protein helix-turn-helix domain J172_00105 SM00480 DNA polymerase III beta subunit J172_00108 SM00387 Histidine kinase-like ATPases J172_00108 SM00433 TopoisomeraseII J172_00111 SM00028 Tetratricopeptide repeats J172_00118 SM00155 Phospholipase D. Active site motifs. J172_00121 SM00729 Elongator protein 3, MiaB family, Radical SAM J172_00127 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J172_00127 SM00245 tail specific protease J172_00135 SM00829 Enoylreductase J172_00160 SM00382 ATPases associated with a variety of cellular activities J172_00184 SM00487 DEAD-like helicases superfamily J172_00184 SM00490 helicase superfamily c-terminal domain J172_00188 SM00822 J172_00188 J172_00189 SM00822 J172_00189 J172_00238 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen J172_00242 SM00421 helix_turn_helix, Lux Regulon J172_00242 SM00448 cheY-homologous receiver domain J172_00246 SM00862 Transcriptional regulatory protein, C terminal J172_00262 SM00642 Alpha-amylase domain J172_00263 SM00642 Alpha-amylase domain J172_00264 SM00642 Alpha-amylase domain J172_00274 SM00354 helix_turn _helix lactose operon repressor J172_00282 SM00344 helix_turn_helix ASNC type J172_00286 SM00382 ATPases associated with a variety of cellular activities J172_00289 SM00382 ATPases associated with a variety of cellular activities J172_00295 SM00530 Helix-turn-helix XRE-family like proteins J172_00300 SM00855 Phosphoglycerate mutase family J172_00301 SM00867 YceI-like domain J172_00302 SM00155 Phospholipase D. Active site motifs. J172_00304 SM00563 Phosphate acyltransferases J172_00307 SM00028 Tetratricopeptide repeats J172_00309 SM00829 Enoylreductase J172_00312 SM01230 J172_00312 J172_00313 SM00938 Nitrogen regulatory protein P-II J172_00315 SM00387 Histidine kinase-like ATPases J172_00315 SM00388 His Kinase A (phosphoacceptor) domain J172_00316 SM00382 ATPases associated with a variety of cellular activities J172_00316 SM00448 cheY-homologous receiver domain J172_00328 SM00450 Rhodanese Homology Domain J172_00333 SM00387 Histidine kinase-like ATPases J172_00333 SM00388 His Kinase A (phosphoacceptor) domain J172_00334 SM00382 ATPases associated with a variety of cellular activities J172_00334 SM00448 cheY-homologous receiver domain J172_00356 SM00563 Phosphate acyltransferases J172_00362 SM00342 helix_turn_helix, arabinose operon control protein J172_00367 SM00100 Cyclic nucleotide-monophosphate binding domain J172_00367 SM00267 diguanylate cyclase J172_00373 SM00878 Biotin carboxylase C-terminal domain J172_00378 SM00953 J172_00378 J172_00386 SM00833 Cobalamin synthesis protein cobW C-terminal domain J172_00391 SM00347 helix_turn_helix multiple antibiotic resistance protein J172_00397 SM00829 Enoylreductase J172_00403 SM00487 DEAD-like helicases superfamily J172_00403 SM00490 helicase superfamily c-terminal domain J172_00403 SM00847 Helicase associated domain (HA2) Add an annotation J172_00428 SM00422 helix_turn_helix, mercury resistance J172_00435 SM00448 cheY-homologous receiver domain J172_00435 SM00862 Transcriptional regulatory protein, C terminal J172_00436 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_00436 SM00387 Histidine kinase-like ATPases J172_00436 SM00388 His Kinase A (phosphoacceptor) domain J172_00462 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J172_00463 SM00347 helix_turn_helix multiple antibiotic resistance protein J172_00467 SM00342 helix_turn_helix, arabinose operon control protein J172_00474 SM00420 helix_turn_helix, Deoxyribose operon repressor J172_00474 SM01134 J172_00474 J172_00477 SM00882 Coenzyme A transferase J172_00478 SM00882 Coenzyme A transferase J172_00482 SM00998 Adenylosuccinate lyase C-terminus J172_00486 SM00346 helix_turn_helix isocitrate lyase regulation J172_00487 SM00090 RIO-like kinase J172_00490 SM01228 J172_00490 J172_00501 SM00729 Elongator protein 3, MiaB family, Radical SAM J172_00501 SM00876 Biotin and Thiamin Synthesis associated domain J172_00506 SM00369 Leucine-rich repeats, typical (most populated) subfamily J172_00526 SM00382 ATPases associated with a variety of cellular activities J172_00538 SM00267 diguanylate cyclase J172_00540 SM00642 Alpha-amylase domain J172_00541 SM00642 Alpha-amylase domain J172_00543 SM00642 Alpha-amylase domain J172_00545 SM00642 Alpha-amylase domain J172_00554 SM00822 J172_00554 J172_00556 SM00487 DEAD-like helicases superfamily J172_00556 SM00490 helicase superfamily c-terminal domain J172_00559 SM00326 Src homology 3 domains J172_00560 SM00861 Transketolase, pyrimidine binding domain J172_00562 SM00237 Domains in Na-Ca exchangers and integrin-beta4 J172_00566 SM00347 helix_turn_helix multiple antibiotic resistance protein J172_00585 SM00271 DnaJ molecular chaperone homology domain J172_00589 SM00046 Diacylglycerol kinase catalytic domain (presumed) J172_00593 SM00903 Flavin reductase like domain J172_00597 SM00100 Cyclic nucleotide-monophosphate binding domain J172_00597 SM00419 helix_turn_helix, cAMP Regulatory protein J172_00607 SM00387 Histidine kinase-like ATPases J172_00607 SM00388 His Kinase A (phosphoacceptor) domain J172_00607 SM00448 cheY-homologous receiver domain J172_00608 SM00052 Putative diguanylate phosphodiesterase J172_00608 SM00267 diguanylate cyclase J172_00608 SM00448 cheY-homologous receiver domain J172_00619 SM00563 Phosphate acyltransferases J172_00623 SM01209 J172_00623 J172_00623 SM01210 J172_00623 J172_00625 SM00798 AICARFT/IMPCHase bienzyme J172_00625 SM00851 MGS-like domain J172_00628 SM00195 Dual specificity phosphatase, catalytic domain J172_00632 SM00563 Phosphate acyltransferases J172_00637 SM00530 Helix-turn-helix XRE-family like proteins J172_00642 SM00878 Biotin carboxylase C-terminal domain J172_00648 SM00342 helix_turn_helix, arabinose operon control protein J172_00650 SM00234 in StAR and phosphatidylcholine transfer protein J172_00654 SM00883 Chaperonin 10 Kd subunit J172_00665 SM00944 Pro-kumamolisin, activation domain J172_00668 SM00867 YceI-like domain J172_00679 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. J172_00681 SM00345 helix_turn_helix gluconate operon transcriptional repressor J172_00681 SM00895 J172_00681 J172_00685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_00685 SM00331 Sigma factor PP2C-like phosphatases J172_00693 SM00342 helix_turn_helix, arabinose operon control protein J172_00705 SM00267 diguanylate cyclase J172_00710 SM00062 Bacterial periplasmic substrate-binding proteins J172_00719 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain J172_00719 SM01232 J172_00719 J172_00721 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J172_00724 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J172_00724 SM00091 PAS domain J172_00724 SM00267 diguanylate cyclase J172_00725 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_00725 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_00725 SM01049 J172_00725 J172_00726 SM00637 J172_00726 J172_00728 SM00267 diguanylate cyclase J172_00734 SM00448 cheY-homologous receiver domain J172_00734 SM00850 LytTr DNA-binding domain J172_00750 SM00382 ATPases associated with a variety of cellular activities J172_00750 SM01086 C-terminal, D2-small domain, of ClpB protein J172_00756 SM00267 diguanylate cyclase J172_00757 SM01263 J172_00757 J172_00760 SM00564 beta-propeller repeat J172_00761 SM00062 Bacterial periplasmic substrate-binding proteins J172_00761 SM00248 ankyrin repeats J172_00764 SM00829 Enoylreductase J172_00766 SM00382 ATPases associated with a variety of cellular activities J172_00768 SM00268 Actin J172_00773 SM00710 Parallel beta-helix repeats J172_00776 SM00936 Penicillin-binding protein 5, C-terminal domain J172_00780 SM00729 Elongator protein 3, MiaB family, Radical SAM J172_00781 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J172_00781 SM00245 tail specific protease J172_00792 SM01350 J172_00792 J172_00794 SM00749 bacterial OsmY and nodulation domain J172_00795 SM00387 Histidine kinase-like ATPases J172_00795 SM00388 His Kinase A (phosphoacceptor) domain J172_00796 SM00448 cheY-homologous receiver domain J172_00797 SM00387 Histidine kinase-like ATPases J172_00797 SM00388 His Kinase A (phosphoacceptor) domain J172_00797 SM00448 cheY-homologous receiver domain J172_00803 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. J172_00808 SM00382 ATPases associated with a variety of cellular activities J172_00824 SM00345 helix_turn_helix gluconate operon transcriptional repressor J172_00824 SM00866 J172_00824 J172_00826 SM00354 helix_turn _helix lactose operon repressor J172_00840 SM00849 Metallo-beta-lactamase superfamily J172_00841 SM00342 helix_turn_helix, arabinose operon control protein J172_00843 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_00843 SM00387 Histidine kinase-like ATPases J172_00843 SM00388 His Kinase A (phosphoacceptor) domain J172_00844 SM00448 cheY-homologous receiver domain J172_00844 SM00862 Transcriptional regulatory protein, C terminal J172_00848 SM00829 Enoylreductase J172_00851 SM00345 helix_turn_helix gluconate operon transcriptional repressor J172_00855 SM00382 ATPases associated with a variety of cellular activities J172_00868 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J172_00874 SM00387 Histidine kinase-like ATPases J172_00874 SM00388 His Kinase A (phosphoacceptor) domain J172_00875 SM00448 cheY-homologous receiver domain J172_00875 SM00862 Transcriptional regulatory protein, C terminal J172_00899 SM00842 Cell division protein FtsA J172_00900 SM00864 Tubulin/FtsZ family, GTPase domain J172_00900 SM00865 Tubulin/FtsZ family, C-terminal domain J172_00904 SM00957 SecA DEAD-like domain J172_00904 SM00958 SecA preprotein cross-linking domain J172_00910 SM00829 Enoylreductase J172_00911 SM00944 Pro-kumamolisin, activation domain J172_00914 SM00642 Alpha-amylase domain J172_00921 SM00996 S-adenosyl-L-homocysteine hydrolase J172_00921 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain J172_00946 SM00382 ATPases associated with a variety of cellular activities J172_00950 SM00382 ATPases associated with a variety of cellular activities J172_00952 SM00448 cheY-homologous receiver domain J172_00952 SM00862 Transcriptional regulatory protein, C terminal J172_00953 SM00387 Histidine kinase-like ATPases J172_00953 SM00388 His Kinase A (phosphoacceptor) domain J172_00963 SM00382 ATPases associated with a variety of cellular activities J172_00965 SM00382 ATPases associated with a variety of cellular activities J172_00978 SM00382 ATPases associated with a variety of cellular activities J172_00981 SM00650 Ribosomal RNA adenine dimethylases J172_00986 SM00108 Bulb-type mannose-specific lectin J172_00995 SM00345 helix_turn_helix gluconate operon transcriptional repressor J172_00995 SM00895 J172_00995 J172_01002 SM00347 helix_turn_helix multiple antibiotic resistance protein J172_01014 SM00448 cheY-homologous receiver domain J172_01015 SM00387 Histidine kinase-like ATPases J172_01015 SM00388 His Kinase A (phosphoacceptor) domain J172_01015 SM00448 cheY-homologous receiver domain J172_01016 SM00421 helix_turn_helix, Lux Regulon J172_01029 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs J172_01029 SM00475 5'-3' exonuclease J172_01035 SM01002 Alanine dehydrogenase/PNT, C-terminal domain J172_01035 SM01003 Alanine dehydrogenase/PNT, N-terminal domain J172_01059 SM00852 Probable molybdopterin binding domain J172_01060 SM00028 Tetratricopeptide repeats J172_01061 SM00937 J172_01061 J172_01063 SM00028 Tetratricopeptide repeats J172_01067 SM01400 J172_01067 J172_01077 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. J172_01077 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. J172_01078 SM00649 Ribosomal protein L11/L12 J172_01084 SM00663 RNA polymerase I subunit A N-terminus J172_01087 SM00838 Elongation factor G C-terminus J172_01087 SM00889 Elongation factor G, domain IV J172_01089 SM01403 J172_01089 J172_01093 SM01382 J172_01093 J172_01093 SM01383 J172_01093 J172_01096 SM00322 K homology RNA-binding domain J172_01100 SM01374 J172_01100 J172_01101 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. J172_01113 SM00363 S4 RNA-binding domain J172_01113 SM01390 J172_01113 J172_01114 SM00662 RNA polymerases D J172_01122 SM00838 Elongation factor G C-terminus J172_01128 SM00829 Enoylreductase J172_01137 SM00382 ATPases associated with a variety of cellular activities J172_01139 SM00829 Enoylreductase J172_01144 SM00855 Phosphoglycerate mutase family J172_01155 SM00014 Acid phosphatase homologues J172_01159 SM00091 PAS domain J172_01159 SM00387 Histidine kinase-like ATPases J172_01159 SM00388 His Kinase A (phosphoacceptor) domain J172_01160 SM00448 cheY-homologous receiver domain J172_01160 SM00862 Transcriptional regulatory protein, C terminal J172_01164 SM01329 J172_01164 J172_01198 SM00387 Histidine kinase-like ATPases J172_01199 SM00091 PAS domain J172_01203 SM00382 ATPases associated with a variety of cellular activities J172_01203 SM00994 ClpX C4-type zinc finger J172_01203 SM01086 C-terminal, D2-small domain, of ClpB protein J172_01204 SM00382 ATPases associated with a variety of cellular activities J172_01204 SM00464 Found in ATP-dependent protease La (LON) J172_01205 SM00411 bacterial (prokaryotic) histone like domain J172_01211 SM00257 Lysin motif J172_01212 SM00849 Metallo-beta-lactamase superfamily J172_01215 SM00479 J172_01215 J172_01216 SM00331 Sigma factor PP2C-like phosphatases J172_01216 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain J172_01221 SM00849 Metallo-beta-lactamase superfamily J172_01222 SM00729 Elongator protein 3, MiaB family, Radical SAM J172_01235 SM00382 ATPases associated with a variety of cellular activities J172_01237 SM00493 J172_01237 J172_01240 SM00460 Transglutaminase/protease-like homologues J172_01242 SM00382 ATPases associated with a variety of cellular activities J172_01251 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. J172_01252 SM00822 J172_01252 J172_01254 SM00825 Beta-ketoacyl synthase J172_01261 SM00382 ATPases associated with a variety of cellular activities J172_01270 SM01359 J172_01270 J172_01270 SM01360 J172_01270 J172_01277 SM00271 DnaJ molecular chaperone homology domain J172_01279 SM00448 cheY-homologous receiver domain J172_01281 SM00244 prohibitin homologues J172_01282 SM00244 prohibitin homologues J172_01283 SM01321 J172_01283 J172_01284 SM00788 Adenylosuccinate synthetase J172_01287 SM00822 J172_01287 J172_01297 SM00220 Serine/Threonine protein kinases, catalytic domain J172_01301 SM00855 Phosphoglycerate mutase family J172_01312 SM00052 Putative diguanylate phosphodiesterase J172_01313 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J172_01315 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J172_01316 SM01092 CO dehydrogenase flavoprotein C-terminal domain J172_01319 SM00974 J172_01319 J172_01323 SM00966 SpoVT / AbrB like domain J172_01327 SM00481 DNA polymerase alpha chain like domain J172_01329 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J172_01336 SM00091 PAS domain J172_01336 SM00342 helix_turn_helix, arabinose operon control protein J172_01341 SM01060 J172_01341 J172_01353 SM00448 cheY-homologous receiver domain J172_01353 SM00862 Transcriptional regulatory protein, C terminal J172_01354 SM00387 Histidine kinase-like ATPases J172_01354 SM00388 His Kinase A (phosphoacceptor) domain J172_01361 SM00421 helix_turn_helix, Lux Regulon J172_01361 SM00448 cheY-homologous receiver domain J172_01364 SM00478 endonuclease III J172_01368 SM00244 prohibitin homologues J172_01386 SM00904 Riboflavin kinase J172_01395 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J172_01396 SM00382 ATPases associated with a variety of cellular activities J172_01398 SM00862 Transcriptional regulatory protein, C terminal J172_01399 SM00342 helix_turn_helix, arabinose operon control protein J172_01406 SM00387 Histidine kinase-like ATPases J172_01406 SM00388 His Kinase A (phosphoacceptor) domain J172_01407 SM00387 Histidine kinase-like ATPases J172_01407 SM00388 His Kinase A (phosphoacceptor) domain J172_01407 SM00448 cheY-homologous receiver domain J172_01412 SM00387 Histidine kinase-like ATPases J172_01412 SM00388 His Kinase A (phosphoacceptor) domain J172_01412 SM00448 cheY-homologous receiver domain J172_01414 SM00138 Methyltransferase, chemotaxis proteins J172_01415 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J172_01415 SM00387 Histidine kinase-like ATPases J172_01415 SM00388 His Kinase A (phosphoacceptor) domain J172_01415 SM00448 cheY-homologous receiver domain J172_01416 SM00091 PAS domain J172_01416 SM00387 Histidine kinase-like ATPases J172_01416 SM00388 His Kinase A (phosphoacceptor) domain J172_01417 SM00448 cheY-homologous receiver domain J172_01419 SM00813 Alpha-L-arabinofuranosidase C-terminus J172_01422 SM00382 ATPases associated with a variety of cellular activities J172_01422 SM00962 SRP54-type protein, GTPase domain J172_01422 SM00963 SRP54-type protein, helical bundle domain J172_01436 SM00533 DNA-binding domain of DNA mismatch repair MUTS family J172_01436 SM00534 ATPase domain of DNA mismatch repair MUTS family J172_01441 SM00812 Alpha-L-fucosidase J172_01446 SM00530 Helix-turn-helix XRE-family like proteins J172_01456 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J172_01457 SM00838 Elongation factor G C-terminus J172_01460 SM00358 Double-stranded RNA binding motif J172_01460 SM00535 Ribonuclease III family J172_01463 SM00448 cheY-homologous receiver domain J172_01465 SM01118 J172_01465 J172_01472 SM00357 Cold shock protein domain J172_01475 SM00487 DEAD-like helicases superfamily J172_01475 SM00490 helicase superfamily c-terminal domain J172_01481 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J172_01481 SM00267 diguanylate cyclase J172_01485 SM00869 Autotransporter beta-domain J172_01486 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J172_01487 SM00671 Sel1-like repeats. J172_01487 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. J172_01526 SM00382 ATPases associated with a variety of cellular activities J172_01543 SM00481 DNA polymerase alpha chain like domain J172_01551 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J172_01557 SM00267 diguanylate cyclase J172_01562 SM00972 Spore Coat Protein U domain J172_01565 SM00972 Spore Coat Protein U domain J172_01567 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J172_01571 SM01172 J172_01571 J172_01572 SM00710 Parallel beta-helix repeats J172_01572 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses J172_01579 SM00434 DNA Topoisomerase IV J172_01580 SM00342 helix_turn_helix, arabinose operon control protein J172_01581 SM00347 helix_turn_helix multiple antibiotic resistance protein J172_01586 SM01217 J172_01586 J172_01587 SM00631 J172_01587 J172_01593 SM00347 helix_turn_helix multiple antibiotic resistance protein J172_01597 SM00382 ATPases associated with a variety of cellular activities J172_01600 SM00947 Carbonic anhydrase J172_01603 SM00357 Cold shock protein domain J172_01626 SM00267 diguanylate cyclase J172_01628 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J172_01628 SM00267 diguanylate cyclase J172_01664 SM00271 DnaJ molecular chaperone homology domain J172_01673 SM00382 ATPases associated with a variety of cellular activities J172_01678 SM00861 Transketolase, pyrimidine binding domain J172_01680 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. J172_01684 SM00116 Domain in cystathionine beta-synthase and other proteins. J172_01684 SM01091 Transporter associated domain J172_01690 SM00382 ATPases associated with a variety of cellular activities J172_01691 SM00345 helix_turn_helix gluconate operon transcriptional repressor J172_01695 SM00984 UDP binding domain J172_01699 SM00354 helix_turn _helix lactose operon repressor J172_01703 SM01018 B12 binding domain J172_01705 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor J172_01709 SM00316 Ribosomal protein S1-like RNA-binding domain J172_01709 SM00357 Cold shock protein domain J172_01709 SM00955 J172_01709 J172_01711 SM00967 RNA 2'-O ribose methyltransferase substrate binding J172_01712 SM00267 diguanylate cyclase J172_01713 SM00479 J172_01713 J172_01716 SM00382 ATPases associated with a variety of cellular activities J172_01723 SM00947 Carbonic anhydrase J172_01725 SM00478 endonuclease III J172_01730 SM00450 Rhodanese Homology Domain J172_01732 SM00644 J172_01732 J172_01736 SM00382 ATPases associated with a variety of cellular activities J172_01737 SM00981 J172_01737 J172_01742 SM00479 J172_01742 J172_01747 SM00947 Carbonic anhydrase J172_01756 SM00421 helix_turn_helix, Lux Regulon J172_01756 SM00448 cheY-homologous receiver domain J172_01768 SM00968 SMC proteins Flexible Hinge Domain J172_01769 SM00771 ZipA, C-terminal domain (FtsZ-binding) J172_01772 SM00292 breast cancer carboxy-terminal domain J172_01772 SM00532 Ligase N family J172_01776 SM00434 DNA Topoisomerase IV J172_01777 SM00564 beta-propeller repeat J172_01784 SM00345 helix_turn_helix gluconate operon transcriptional repressor J172_01784 SM00866 J172_01784 J172_01789 SM00240 Forkhead associated domain J172_01793 SM00830 Chorismate mutase type II J172_01810 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_01810 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_01812 SM00347 helix_turn_helix multiple antibiotic resistance protein J172_01813 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J172_01813 SM00091 PAS domain J172_01813 SM00387 Histidine kinase-like ATPases J172_01813 SM00388 His Kinase A (phosphoacceptor) domain J172_01813 SM00448 cheY-homologous receiver domain J172_01814 SM00448 cheY-homologous receiver domain J172_01815 SM00382 ATPases associated with a variety of cellular activities J172_01816 SM00091 PAS domain J172_01816 SM00387 Histidine kinase-like ATPases J172_01816 SM00388 His Kinase A (phosphoacceptor) domain J172_01816 SM00448 cheY-homologous receiver domain J172_01847 SM00729 Elongator protein 3, MiaB family, Radical SAM J172_01849 SM00382 ATPases associated with a variety of cellular activities J172_01854 SM00116 Domain in cystathionine beta-synthase and other proteins. J172_01854 SM01091 Transporter associated domain J172_01859 SM00387 Histidine kinase-like ATPases J172_01859 SM00433 TopoisomeraseII J172_01864 SM01192 J172_01864 J172_01864 SM01193 J172_01864 J172_01869 SM00463 Small MutS-related domain J172_01873 SM00257 Lysin motif J172_01876 SM01103 J172_01876 J172_01878 SM00382 ATPases associated with a variety of cellular activities J172_01886 SM00382 ATPases associated with a variety of cellular activities J172_01888 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain J172_01891 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J172_01891 SM00091 PAS domain J172_01891 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_01901 SM00670 Large family of predicted nucleotide-binding domains J172_01905 SM01130 J172_01905 J172_01910 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J172_01919 SM00758 J172_01919 J172_01926 SM00646 J172_01926 J172_01942 SM00052 Putative diguanylate phosphodiesterase J172_01942 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J172_01942 SM00267 diguanylate cyclase J172_01944 SM00448 cheY-homologous receiver domain J172_01945 SM00387 Histidine kinase-like ATPases J172_01947 SM00014 Acid phosphatase homologues J172_01962 SM00912 haemagglutination activity domain J172_01972 SM00100 Cyclic nucleotide-monophosphate binding domain J172_01972 SM00419 helix_turn_helix, cAMP Regulatory protein J172_01987 SM01007 Class II Aldolase and Adducin N-terminal domain J172_01996 SM00841 Elongation factor P, C-terminal J172_01996 SM01185 J172_01996 J172_01997 SM00822 J172_01997 J172_02001 SM00899 J172_02001 J172_02008 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain J172_02010 SM00851 MGS-like domain J172_02010 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J172_02021 SM00850 LytTr DNA-binding domain J172_02022 SM00937 J172_02022 J172_02024 SM00448 cheY-homologous receiver domain J172_02024 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J172_02025 SM00073 Histidine Phosphotransfer domain J172_02025 SM00387 Histidine kinase-like ATPases J172_02025 SM00388 His Kinase A (phosphoacceptor) domain J172_02025 SM00448 cheY-homologous receiver domain J172_02030 SM00966 SpoVT / AbrB like domain J172_02034 SM00052 Putative diguanylate phosphodiesterase J172_02034 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J172_02034 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J172_02034 SM00091 PAS domain J172_02034 SM00267 diguanylate cyclase J172_02035 SM00448 cheY-homologous receiver domain J172_02037 SM00138 Methyltransferase, chemotaxis proteins J172_02038 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_02038 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_02039 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_02039 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_02040 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_02040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_02041 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_02041 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_02042 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_02042 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_02043 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_02043 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_02044 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_02046 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_02046 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_02047 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_02047 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_02047 SM01049 J172_02047 J172_02049 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_02049 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_02050 SM00073 Histidine Phosphotransfer domain J172_02050 SM00260 Two component signalling adaptor domain J172_02050 SM00387 Histidine kinase-like ATPases J172_02050 SM01231 J172_02050 J172_02051 SM00448 cheY-homologous receiver domain J172_02053 SM00260 Two component signalling adaptor domain J172_02059 SM00220 Serine/Threonine protein kinases, catalytic domain J172_02073 SM00530 Helix-turn-helix XRE-family like proteins J172_02078 SM00073 Histidine Phosphotransfer domain J172_02078 SM00260 Two component signalling adaptor domain J172_02078 SM00387 Histidine kinase-like ATPases J172_02078 SM01231 J172_02078 J172_02080 SM00448 cheY-homologous receiver domain J172_02083 SM00382 ATPases associated with a variety of cellular activities J172_02083 SM00962 SRP54-type protein, GTPase domain J172_02086 SM00052 Putative diguanylate phosphodiesterase J172_02086 SM00267 diguanylate cyclase J172_02087 SM00267 diguanylate cyclase J172_02088 SM00267 diguanylate cyclase J172_02099 SM00382 ATPases associated with a variety of cellular activities J172_02110 SM00822 J172_02110 J172_02115 SM00382 ATPases associated with a variety of cellular activities J172_02116 SM00448 cheY-homologous receiver domain J172_02118 SM00421 helix_turn_helix, Lux Regulon J172_02118 SM00448 cheY-homologous receiver domain J172_02126 SM00047 Lysozyme subfamily 2 J172_02135 SM00260 Two component signalling adaptor domain J172_02135 SM00448 cheY-homologous receiver domain J172_02136 SM00858 J172_02136 J172_02139 SM00387 Histidine kinase-like ATPases J172_02140 SM00052 Putative diguanylate phosphodiesterase J172_02140 SM00267 diguanylate cyclase J172_02140 SM00448 cheY-homologous receiver domain J172_02141 SM00091 PAS domain J172_02141 SM00387 Histidine kinase-like ATPases J172_02142 SM00052 Putative diguanylate phosphodiesterase J172_02142 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J172_02142 SM00091 PAS domain J172_02142 SM00267 diguanylate cyclase J172_02144 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_02149 SM00382 ATPases associated with a variety of cellular activities J172_02149 SM01086 C-terminal, D2-small domain, of ClpB protein J172_02150 SM00316 Ribosomal protein S1-like RNA-binding domain J172_02154 SM00382 ATPases associated with a variety of cellular activities J172_02154 SM00843 J172_02154 J172_02158 SM00382 ATPases associated with a variety of cellular activities J172_02165 SM00562 J172_02165 J172_02167 SM00028 Tetratricopeptide repeats J172_02170 SM00564 beta-propeller repeat J172_02171 SM00382 ATPases associated with a variety of cellular activities J172_02172 SM00852 Probable molybdopterin binding domain J172_02173 SM00450 Rhodanese Homology Domain J172_02182 SM00852 Probable molybdopterin binding domain J172_02187 SM00529 Helix-turn-helix diphteria tox regulatory element J172_02189 SM00479 J172_02189 J172_02203 SM00316 Ribosomal protein S1-like RNA-binding domain J172_02203 SM00732 Likely ribonuclease with RNase H fold. J172_02204 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J172_02204 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J172_02204 SM00091 PAS domain J172_02204 SM00387 Histidine kinase-like ATPases J172_02204 SM00388 His Kinase A (phosphoacceptor) domain J172_02204 SM00448 cheY-homologous receiver domain J172_02205 SM00448 cheY-homologous receiver domain J172_02222 SM00382 ATPases associated with a variety of cellular activities J172_02233 SM00382 ATPases associated with a variety of cellular activities J172_02235 SM00849 Metallo-beta-lactamase superfamily J172_02238 SM00382 ATPases associated with a variety of cellular activities J172_02241 SM00226 Low molecular weight phosphatase family J172_02243 SM00278 Helix-hairpin-helix DNA-binding motif class 1 J172_02243 SM00465 GIY-YIG type nucleases (URI domain) J172_02249 SM00823 Phosphopantetheine attachment site J172_02256 SM00984 UDP binding domain J172_02260 SM00450 Rhodanese Homology Domain J172_02261 SM00421 helix_turn_helix, Lux Regulon J172_02261 SM00448 cheY-homologous receiver domain J172_02262 SM00316 Ribosomal protein S1-like RNA-binding domain J172_02263 SM00363 S4 RNA-binding domain J172_02271 SM01034 Sensors of blue-light using FAD J172_02292 SM00448 cheY-homologous receiver domain J172_02292 SM00850 LytTr DNA-binding domain J172_02295 SM00869 Autotransporter beta-domain J172_02299 SM00387 Histidine kinase-like ATPases J172_02299 SM00388 His Kinase A (phosphoacceptor) domain J172_02300 SM00421 helix_turn_helix, Lux Regulon J172_02300 SM00448 cheY-homologous receiver domain J172_02301 SM00869 Autotransporter beta-domain J172_02302 SM00052 Putative diguanylate phosphodiesterase J172_02307 SM01012 J172_02307 J172_02316 SM00342 helix_turn_helix, arabinose operon control protein J172_02317 SM00387 Histidine kinase-like ATPases J172_02318 SM00421 helix_turn_helix, Lux Regulon J172_02318 SM00448 cheY-homologous receiver domain J172_02319 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_02326 SM00530 Helix-turn-helix XRE-family like proteins J172_02340 SM00966 SpoVT / AbrB like domain J172_02345 SM00965 Secretin and TonB N terminus short domain J172_02350 SM00736 Dystroglycan-type cadherin-like domains. J172_02355 SM00382 ATPases associated with a variety of cellular activities J172_02366 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain J172_02366 SM00437 Bacterial DNA topoisomerase I DNA-binding domain J172_02391 SM00342 helix_turn_helix, arabinose operon control protein J172_02400 SM00487 DEAD-like helicases superfamily J172_02451 SM00116 Domain in cystathionine beta-synthase and other proteins. J172_02451 SM01240 J172_02451 J172_02456 SM00822 J172_02456 J172_02458 SM00028 Tetratricopeptide repeats J172_02460 SM00411 bacterial (prokaryotic) histone like domain J172_02461 SM00316 Ribosomal protein S1-like RNA-binding domain J172_02477 SM00354 helix_turn _helix lactose operon repressor J172_02482 SM00363 S4 RNA-binding domain J172_02487 SM00382 ATPases associated with a variety of cellular activities J172_02497 SM00357 Cold shock protein domain J172_02498 SM00382 ATPases associated with a variety of cellular activities J172_02499 SM00382 ATPases associated with a variety of cellular activities J172_02505 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J172_02507 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase J172_02510 SM00859 Semialdehyde dehydrogenase, NAD binding domain J172_02518 SM00840 J172_02518 J172_02522 SM01234 J172_02522 J172_02530 SM00849 Metallo-beta-lactamase superfamily J172_02535 SM00656 J172_02535 J172_02543 SM00841 Elongation factor P, C-terminal J172_02543 SM01185 J172_02543 J172_02545 SM00052 Putative diguanylate phosphodiesterase J172_02545 SM00267 diguanylate cyclase J172_02545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_02552 SM00382 ATPases associated with a variety of cellular activities J172_02553 SM00487 DEAD-like helicases superfamily J172_02553 SM00490 helicase superfamily c-terminal domain J172_02558 SM00357 Cold shock protein domain J172_02559 SM01322 J172_02559 J172_02561 SM00052 Putative diguanylate phosphodiesterase J172_02561 SM00267 diguanylate cyclase J172_02564 SM00822 J172_02564 J172_02568 SM00853 MutL C terminal dimerisation domain J172_02568 SM01340 J172_02568 J172_02569 SM00646 J172_02569 J172_02576 SM00474 3'-5' exonuclease J172_02580 SM00528 Domain in histone-like proteins of HNS family J172_02598 SM00857 Resolvase, N terminal domain J172_02613 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J172_02613 SM00267 diguanylate cyclase J172_02614 SM00260 Two component signalling adaptor domain J172_02615 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_02615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_02617 SM00487 DEAD-like helicases superfamily J172_02617 SM00490 helicase superfamily c-terminal domain J172_02628 SM00729 Elongator protein 3, MiaB family, Radical SAM J172_02633 SM00116 Domain in cystathionine beta-synthase and other proteins. J172_02633 SM01091 Transporter associated domain J172_02639 SM00382 ATPases associated with a variety of cellular activities J172_02645 SM01230 J172_02645 J172_02647 SM01230 J172_02647 J172_02649 SM00267 diguanylate cyclase J172_02649 SM00448 cheY-homologous receiver domain J172_02659 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J172_02659 SM00091 PAS domain J172_02659 SM00387 Histidine kinase-like ATPases J172_02659 SM00388 His Kinase A (phosphoacceptor) domain J172_02659 SM00448 cheY-homologous receiver domain J172_02659 SM01079 J172_02659 J172_02660 SM00448 cheY-homologous receiver domain J172_02660 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J172_02666 SM00354 helix_turn _helix lactose operon repressor J172_02679 SM01323 J172_02679 J172_02682 SM00344 helix_turn_helix ASNC type J172_02697 SM00387 Histidine kinase-like ATPases J172_02707 SM00944 Pro-kumamolisin, activation domain J172_02718 SM01130 J172_02718 J172_02723 SM00342 helix_turn_helix, arabinose operon control protein J172_02724 SM00382 ATPases associated with a variety of cellular activities J172_02724 SM00962 SRP54-type protein, GTPase domain J172_02724 SM00963 SRP54-type protein, helical bundle domain J172_02725 SM00478 endonuclease III J172_02727 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J172_02727 SM00091 PAS domain J172_02727 SM00387 Histidine kinase-like ATPases J172_02727 SM00388 His Kinase A (phosphoacceptor) domain J172_02727 SM00448 cheY-homologous receiver domain J172_02730 SM00465 GIY-YIG type nucleases (URI domain) J172_02736 SM00507 HNH nucleases J172_02737 SM00861 Transketolase, pyrimidine binding domain J172_02742 SM00849 Metallo-beta-lactamase superfamily J172_02759 SM00422 helix_turn_helix, mercury resistance J172_02760 SM00411 bacterial (prokaryotic) histone like domain J172_02761 SM00873 B3/4 domain J172_02761 SM00874 tRNA synthetase B5 domain J172_02761 SM00896 Ferredoxin-fold anticodon binding domain J172_02767 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain J172_02768 SM00354 helix_turn _helix lactose operon repressor J172_02769 SM00642 Alpha-amylase domain J172_02776 SM00642 Alpha-amylase domain J172_02787 SM00382 ATPases associated with a variety of cellular activities J172_02799 SM00487 DEAD-like helicases superfamily J172_02799 SM00490 helicase superfamily c-terminal domain J172_02850 SM01001 AIR carboxylase J172_02854 SM00316 Ribosomal protein S1-like RNA-binding domain J172_02854 SM00322 K homology RNA-binding domain J172_02855 SM01387 J172_02855 J172_02859 SM00316 Ribosomal protein S1-like RNA-binding domain J172_02859 SM00322 K homology RNA-binding domain J172_02869 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J172_02870 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J172_02879 SM00822 J172_02879 J172_02882 SM00052 Putative diguanylate phosphodiesterase J172_02882 SM00267 diguanylate cyclase J172_02882 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_02896 SM00859 Semialdehyde dehydrogenase, NAD binding domain J172_02902 SM00257 Lysin motif J172_02908 SM00729 Elongator protein 3, MiaB family, Radical SAM J172_02921 SM01160 J172_02921 J172_02932 SM00098 Alkaline phosphatase homologues J172_02933 SM00977 TilS substrate C-terminal domain J172_02936 SM01351 J172_02936 J172_02943 SM00316 Ribosomal protein S1-like RNA-binding domain J172_02969 SM00382 ATPases associated with a variety of cellular activities J172_02976 SM00448 cheY-homologous receiver domain J172_02976 SM00862 Transcriptional regulatory protein, C terminal J172_02977 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_02977 SM00387 Histidine kinase-like ATPases J172_02977 SM00388 His Kinase A (phosphoacceptor) domain J172_02983 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J172_02983 SM00267 diguanylate cyclase J172_02984 SM00363 S4 RNA-binding domain J172_02985 SM00052 Putative diguanylate phosphodiesterase J172_02985 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J172_02985 SM00091 PAS domain J172_02985 SM00267 diguanylate cyclase J172_02986 SM00487 DEAD-like helicases superfamily J172_02986 SM00490 helicase superfamily c-terminal domain J172_02995 SM00342 helix_turn_helix, arabinose operon control protein J172_02995 SM00478 endonuclease III J172_02995 SM01009 AlkA N-terminal domain J172_02999 SM00829 Enoylreductase J172_03013 SM00342 helix_turn_helix, arabinose operon control protein J172_03027 SM00645 Papain family cysteine protease J172_03028 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_03028 SM00387 Histidine kinase-like ATPases J172_03028 SM00388 His Kinase A (phosphoacceptor) domain J172_03029 SM00448 cheY-homologous receiver domain J172_03029 SM00862 Transcriptional regulatory protein, C terminal J172_03032 SM00487 DEAD-like helicases superfamily J172_03032 SM00490 helicase superfamily c-terminal domain J172_03032 SM00982 J172_03032 J172_03032 SM01058 CarD-like/TRCF domain J172_03039 SM00073 Histidine Phosphotransfer domain J172_03039 SM00260 Two component signalling adaptor domain J172_03039 SM00387 Histidine kinase-like ATPases J172_03039 SM01231 J172_03039 J172_03040 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_03040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_03041 SM00260 Two component signalling adaptor domain J172_03042 SM00052 Putative diguanylate phosphodiesterase J172_03042 SM00448 cheY-homologous receiver domain J172_03043 SM00138 Methyltransferase, chemotaxis proteins J172_03044 SM00448 cheY-homologous receiver domain J172_03045 SM00155 Phospholipase D. Active site motifs. J172_03048 SM00855 Phosphoglycerate mutase family J172_03058 SM00248 ankyrin repeats J172_03068 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J172_03069 SM01092 CO dehydrogenase flavoprotein C-terminal domain J172_03071 SM00829 Enoylreductase J172_03072 SM00267 diguanylate cyclase J172_03073 SM00487 DEAD-like helicases superfamily J172_03093 SM00732 Likely ribonuclease with RNase H fold. J172_03100 SM00382 ATPases associated with a variety of cellular activities J172_03103 SM00411 bacterial (prokaryotic) histone like domain J172_03109 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain J172_03112 SM00382 ATPases associated with a variety of cellular activities J172_03118 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. J172_03119 SM00671 Sel1-like repeats. J172_03125 SM00054 EF-hand, calcium binding motif J172_03143 SM00116 Domain in cystathionine beta-synthase and other proteins. J172_03147 SM00382 ATPases associated with a variety of cellular activities J172_03156 SM00924 MgtE intracellular N domain J172_03162 SM00656 J172_03162 J172_03164 SM00421 helix_turn_helix, Lux Regulon J172_03170 SM00849 Metallo-beta-lactamase superfamily J172_03172 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. J172_03176 SM00422 helix_turn_helix, mercury resistance J172_03203 SM00342 helix_turn_helix, arabinose operon control protein J172_03205 SM00387 Histidine kinase-like ATPases J172_03205 SM00388 His Kinase A (phosphoacceptor) domain J172_03205 SM00448 cheY-homologous receiver domain J172_03206 SM00387 Histidine kinase-like ATPases J172_03206 SM00388 His Kinase A (phosphoacceptor) domain J172_03206 SM00448 cheY-homologous receiver domain J172_03208 SM00387 Histidine kinase-like ATPases J172_03208 SM00388 His Kinase A (phosphoacceptor) domain J172_03208 SM00448 cheY-homologous receiver domain J172_03209 SM00867 YceI-like domain J172_03211 SM00867 YceI-like domain J172_03223 SM00116 Domain in cystathionine beta-synthase and other proteins. J172_03229 SM00028 Tetratricopeptide repeats J172_03249 SM00812 Alpha-L-fucosidase J172_03250 SM00636 J172_03250 J172_03253 SM00758 J172_03253 J172_03253 SM01217 J172_03253 J172_03259 SM01149 J172_03259 J172_03266 SM00369 Leucine-rich repeats, typical (most populated) subfamily J172_03270 SM00260 Two component signalling adaptor domain J172_03272 SM00073 Histidine Phosphotransfer domain J172_03272 SM00260 Two component signalling adaptor domain J172_03272 SM00387 Histidine kinase-like ATPases J172_03272 SM00448 cheY-homologous receiver domain J172_03272 SM01231 J172_03272 J172_03273 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_03274 SM00260 Two component signalling adaptor domain J172_03275 SM00448 cheY-homologous receiver domain J172_03276 SM00448 cheY-homologous receiver domain J172_03281 SM00491 J172_03281 J172_03286 SM00954 Region found in RelA / SpoT proteins J172_03295 SM00382 ATPases associated with a variety of cellular activities J172_03295 SM00487 DEAD-like helicases superfamily J172_03295 SM00490 helicase superfamily c-terminal domain J172_03295 SM00847 Helicase associated domain (HA2) Add an annotation J172_03297 SM00341 Helicase and RNase D C-terminal J172_03297 SM00487 DEAD-like helicases superfamily J172_03297 SM00490 helicase superfamily c-terminal domain J172_03297 SM00956 J172_03297 J172_03299 SM00448 cheY-homologous receiver domain J172_03304 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_03304 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_03307 SM00448 cheY-homologous receiver domain J172_03308 SM00091 PAS domain J172_03308 SM00911 HWE histidine kinase J172_03319 SM00382 ATPases associated with a variety of cellular activities J172_03322 SM00278 Helix-hairpin-helix DNA-binding motif class 1 J172_03329 SM00834 Putative regulatory protein J172_03338 SM00382 ATPases associated with a variety of cellular activities J172_03358 SM00855 Phosphoglycerate mutase family J172_03369 SM00382 ATPases associated with a variety of cellular activities J172_03369 SM01086 C-terminal, D2-small domain, of ClpB protein J172_03370 SM00382 ATPases associated with a variety of cellular activities J172_03372 SM00062 Bacterial periplasmic substrate-binding proteins J172_03387 SM00564 beta-propeller repeat J172_03388 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_03409 SM01126 J172_03409 J172_03411 SM00881 CoA binding domain J172_03413 SM00387 Histidine kinase-like ATPases J172_03413 SM00388 His Kinase A (phosphoacceptor) domain J172_03414 SM00382 ATPases associated with a variety of cellular activities J172_03414 SM00448 cheY-homologous receiver domain J172_03428 SM00387 Histidine kinase-like ATPases J172_03428 SM00388 His Kinase A (phosphoacceptor) domain J172_03429 SM00448 cheY-homologous receiver domain J172_03429 SM00862 Transcriptional regulatory protein, C terminal J172_03432 SM00642 Alpha-amylase domain J172_03433 SM00528 Domain in histone-like proteins of HNS family J172_03435 SM00318 Staphylococcal nuclease homologues J172_03450 SM00387 Histidine kinase-like ATPases J172_03450 SM00388 His Kinase A (phosphoacceptor) domain J172_03451 SM00448 cheY-homologous receiver domain J172_03453 SM00646 J172_03453 J172_03462 SM00530 Helix-turn-helix XRE-family like proteins J172_03466 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J172_03466 SM00387 Histidine kinase-like ATPases J172_03470 SM00255 Toll - interleukin 1 - resistance J172_03474 SM00869 Autotransporter beta-domain J172_03484 SM00354 helix_turn _helix lactose operon repressor J172_03490 SM00967 RNA 2'-O ribose methyltransferase substrate binding J172_03511 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J172_03511 SM00387 Histidine kinase-like ATPases J172_03517 SM00506 Appr-1"-p processing enzyme J172_03526 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J172_03531 SM00849 Metallo-beta-lactamase superfamily J172_03534 SM00382 ATPases associated with a variety of cellular activities J172_03546 SM00861 Transketolase, pyrimidine binding domain J172_03549 SM00028 Tetratricopeptide repeats J172_03549 SM00327 von Willebrand factor (vWF) type A domain J172_03550 SM00327 von Willebrand factor (vWF) type A domain J172_03553 SM00382 ATPases associated with a variety of cellular activities J172_03555 SM00965 Secretin and TonB N terminus short domain J172_03566 SM00487 DEAD-like helicases superfamily J172_03566 SM00490 helicase superfamily c-terminal domain J172_03568 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. J172_03568 SM00954 Region found in RelA / SpoT proteins J172_03569 SM01409 J172_03569 J172_03570 SM00072 Guanylate kinase homologues. J172_03575 SM00729 Elongator protein 3, MiaB family, Radical SAM J172_03581 SM01011 Aminopeptidase P, N-terminal domain J172_03596 SM00028 Tetratricopeptide repeats J172_03596 SM00382 ATPases associated with a variety of cellular activities J172_03596 SM00421 helix_turn_helix, Lux Regulon J172_03610 SM00464 Found in ATP-dependent protease La (LON) J172_03620 SM00342 helix_turn_helix, arabinose operon control protein J172_03621 SM00862 Transcriptional regulatory protein, C terminal J172_03625 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_03631 SM00917 LeuA allosteric (dimerisation) domain J172_03632 SM01329 J172_03632 J172_03636 SM00267 diguanylate cyclase J172_03646 SM00919 Malic enzyme, NAD binding domain J172_03646 SM01274 J172_03646 J172_03649 SM00387 Histidine kinase-like ATPases J172_03649 SM00388 His Kinase A (phosphoacceptor) domain J172_03649 SM00448 cheY-homologous receiver domain J172_03657 SM00421 helix_turn_helix, Lux Regulon J172_03657 SM00448 cheY-homologous receiver domain J172_03659 SM00387 Histidine kinase-like ATPases J172_03659 SM00388 His Kinase A (phosphoacceptor) domain J172_03660 SM00448 cheY-homologous receiver domain J172_03660 SM00862 Transcriptional regulatory protein, C terminal J172_03664 SM00822 J172_03664 J172_03665 SM00354 helix_turn _helix lactose operon repressor J172_03668 SM00642 Alpha-amylase domain J172_03670 SM01154 J172_03670 J172_03677 SM00450 Rhodanese Homology Domain J172_03690 SM00028 Tetratricopeptide repeats J172_03707 SM00345 helix_turn_helix gluconate operon transcriptional repressor J172_03707 SM00866 J172_03707 J172_03719 SM00382 ATPases associated with a variety of cellular activities J172_03724 SM01211 J172_03724 J172_03737 SM00656 J172_03737 J172_03743 SM00528 Domain in histone-like proteins of HNS family J172_03746 SM00382 ATPases associated with a variety of cellular activities J172_03752 SM00882 Coenzyme A transferase J172_03753 SM00882 Coenzyme A transferase J172_03756 SM00984 UDP binding domain J172_03761 SM00893 Electron transfer flavoprotein domain J172_03762 SM00893 Electron transfer flavoprotein domain J172_03776 SM00382 ATPases associated with a variety of cellular activities J172_03779 SM00116 Domain in cystathionine beta-synthase and other proteins. J172_03786 SM00487 DEAD-like helicases superfamily J172_03786 SM00490 helicase superfamily c-terminal domain J172_03793 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J172_03800 SM00825 Beta-ketoacyl synthase J172_03815 SM00382 ATPases associated with a variety of cellular activities J172_03819 SM00382 ATPases associated with a variety of cellular activities J172_03819 SM00387 Histidine kinase-like ATPases J172_03819 SM00448 cheY-homologous receiver domain J172_03822 SM00830 Chorismate mutase type II J172_03824 SM00382 ATPases associated with a variety of cellular activities J172_03838 SM00986 Uracil DNA glycosylase superfamily J172_03838 SM00987 UreE urease accessory protein, C-terminal domain J172_03844 SM00382 ATPases associated with a variety of cellular activities J172_03844 SM00930 J172_03844 J172_03848 SM00387 Histidine kinase-like ATPases J172_03848 SM00388 His Kinase A (phosphoacceptor) domain J172_03848 SM00448 cheY-homologous receiver domain J172_03858 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J172_03858 SM00091 PAS domain J172_03858 SM00387 Histidine kinase-like ATPases J172_03858 SM00388 His Kinase A (phosphoacceptor) domain J172_03858 SM00448 cheY-homologous receiver domain J172_03862 SM01005 Alanine racemase, C-terminal domain J172_03864 SM00344 helix_turn_helix ASNC type J172_03875 SM00382 ATPases associated with a variety of cellular activities J172_03877 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. J172_03878 SM00986 Uracil DNA glycosylase superfamily J172_03878 SM00987 UreE urease accessory protein, C-terminal domain J172_03879 SM00729 Elongator protein 3, MiaB family, Radical SAM J172_03892 SM00448 cheY-homologous receiver domain J172_03892 SM00850 LytTr DNA-binding domain J172_03893 SM00387 Histidine kinase-like ATPases J172_03900 SM00091 PAS domain J172_03900 SM00138 Methyltransferase, chemotaxis proteins J172_03900 SM00911 HWE histidine kinase J172_03901 SM00448 cheY-homologous receiver domain J172_03903 SM00382 ATPases associated with a variety of cellular activities J172_03903 SM00448 cheY-homologous receiver domain J172_03914 SM00382 ATPases associated with a variety of cellular activities J172_03929 SM00382 ATPases associated with a variety of cellular activities J172_03930 SM00631 J172_03930 J172_03938 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). J172_03938 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_03939 SM00477 DNA/RNA non-specific endonuclease J172_03939 SM00892 DNA/RNA non-specific endonuclease J172_03970 SM00257 Lysin motif J172_03975 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain J172_03975 SM00437 Bacterial DNA topoisomerase I DNA-binding domain J172_03975 SM00493 J172_03975 J172_03986 SM00487 DEAD-like helicases superfamily J172_03986 SM00490 helicase superfamily c-terminal domain J172_03993 SM00986 Uracil DNA glycosylase superfamily J172_03993 SM00987 UreE urease accessory protein, C-terminal domain J172_03994 SM00448 cheY-homologous receiver domain J172_03996 SM00382 ATPases associated with a variety of cellular activities J172_03997 SM00487 DEAD-like helicases superfamily J172_03997 SM00490 helicase superfamily c-terminal domain J172_03999 SM00357 Cold shock protein domain J172_03999 SM00382 ATPases associated with a variety of cellular activities J172_03999 SM00959 Rho termination factor, N-terminal domain J172_04005 SM00487 DEAD-like helicases superfamily J172_04014 SM00257 Lysin motif J172_04020 SM01150 J172_04020 J172_04029 SM00644 J172_04029 J172_04031 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J172_04038 SM01217 J172_04038 J172_04039 SM00905 Dihydroneopterin aldolase J172_04044 SM00400 zinc finger J172_04044 SM00493 J172_04044 J172_04044 SM00766 DNA primase DnaG DnaB-binding J172_04066 SM00363 S4 RNA-binding domain J172_04075 SM00470 ParB-like nuclease domain J172_04079 SM01259 J172_04079 J172_04085 SM00836 DALR anticodon binding domain J172_04085 SM01016 Arginyl tRNA synthetase N terminal dom J172_04091 SM00823 Phosphopantetheine attachment site J172_04091 SM00824 Thioesterase J172_04098 SM00938 Nitrogen regulatory protein P-II J172_04100 SM00382 ATPases associated with a variety of cellular activities J172_04126 SM00052 Putative diguanylate phosphodiesterase J172_04134 SM00244 prohibitin homologues J172_04144 SM00448 cheY-homologous receiver domain J172_04144 SM00862 Transcriptional regulatory protein, C terminal J172_04145 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain J172_04145 SM00387 Histidine kinase-like ATPases J172_04145 SM00388 His Kinase A (phosphoacceptor) domain J172_04149 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. J172_04158 SM01060 J172_04158 J172_04161 SM00421 helix_turn_helix, Lux Regulon J172_04161 SM00448 cheY-homologous receiver domain J172_04164 SM00382 ATPases associated with a variety of cellular activities J172_04173 SM00849 Metallo-beta-lactamase superfamily J172_04179 SM00960 Roadblock/LC7 domain J172_04192 SM00387 Histidine kinase-like ATPases J172_04192 SM00388 His Kinase A (phosphoacceptor) domain J172_04193 SM00448 cheY-homologous receiver domain J172_04193 SM00862 Transcriptional regulatory protein, C terminal J172_04197 SM00248 ankyrin repeats J172_04198 SM01060 J172_04198 J172_04199 SM00491 J172_04199 J172_04205 SM00477 DNA/RNA non-specific endonuclease J172_04205 SM00892 DNA/RNA non-specific endonuclease J172_04208 SM01004 Delta-aminolevulinic acid dehydratase J172_04216 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. J172_04220 SM00382 ATPases associated with a variety of cellular activities J172_04222 SM00530 Helix-turn-helix XRE-family like proteins J172_04230 SM00342 helix_turn_helix, arabinose operon control protein J172_04232 SM00382 ATPases associated with a variety of cellular activities J172_04245 SM00881 CoA binding domain J172_04246 SM00116 Domain in cystathionine beta-synthase and other proteins. J172_04246 SM00924 MgtE intracellular N domain J172_04247 SM01057 Eukaryotic-type carbonic anhydrase J172_04252 SM00248 ankyrin repeats J172_04254 SM00825 Beta-ketoacyl synthase J172_04259 SM00822 J172_04259 J172_04268 SM00563 Phosphate acyltransferases J172_04279 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs J172_04279 SM00474 3'-5' exonuclease J172_04279 SM00475 5'-3' exonuclease J172_04279 SM00482 DNA polymerase A domain J172_04282 SM00912 haemagglutination activity domain J172_04286 SM00331 Sigma factor PP2C-like phosphatases J172_04286 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain J172_04291 SM00240 Forkhead associated domain J172_04294 SM00028 Tetratricopeptide repeats J172_04296 SM00220 Serine/Threonine protein kinases, catalytic domain J172_04300 SM00965 Secretin and TonB N terminus short domain J172_04302 SM00915 Jacalin-like lectin domain J172_04308 SM00382 ATPases associated with a variety of cellular activities J172_04308 SM01086 C-terminal, D2-small domain, of ClpB protein J172_04316 SM00342 helix_turn_helix, arabinose operon control protein J172_04318 SM01266 J172_04318 J172_04321 SM00155 Phospholipase D. Active site motifs. J172_04350 SM00421 helix_turn_helix, Lux Regulon J172_04350 SM00448 cheY-homologous receiver domain J172_04360 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J172_04364 SM00346 helix_turn_helix isocitrate lyase regulation J172_04366 SM00091 PAS domain J172_04366 SM00387 Histidine kinase-like ATPases J172_04366 SM00388 His Kinase A (phosphoacceptor) domain J172_04366 SM00448 cheY-homologous receiver domain J172_04371 SM00564 beta-propeller repeat J172_04381 SM00382 ATPases associated with a variety of cellular activities J172_04383 SM00836 DALR anticodon binding domain J172_04385 SM00382 ATPases associated with a variety of cellular activities J172_04399 SM00354 helix_turn _helix lactose operon repressor J172_04402 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain J172_04404 SM00758 J172_04404 J172_04404 SM01217 J172_04404 J172_04408 SM00612 J172_04408 J172_04415 SM01007 Class II Aldolase and Adducin N-terminal domain J172_04420 SM00633 Glycosyl hydrolase family 10 J172_04423 SM00633 Glycosyl hydrolase family 10 J172_04425 SM00633 Glycosyl hydrolase family 10 J172_04439 SM00829 Enoylreductase J172_04440 SM00563 Phosphate acyltransferases J172_04442 SM00354 helix_turn _helix lactose operon repressor J172_04446 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family J172_04454 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J172_04454 SM00388 His Kinase A (phosphoacceptor) domain J172_04457 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain J172_04457 SM01232 J172_04457 J172_04465 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J172_04465 SM00091 PAS domain J172_04476 SM00347 helix_turn_helix multiple antibiotic resistance protein J172_04483 SM00155 Phospholipase D. Active site motifs. J172_04499 SM00796 Allophanate hydrolase subunit 1 J172_04499 SM00797 Allophanate hydrolase subunit 2 J172_04499 SM00878 Biotin carboxylase C-terminal domain J172_04513 SM00382 ATPases associated with a variety of cellular activities J172_04523 SM00829 Enoylreductase J172_04531 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. J172_04531 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) J172_04531 SM00091 PAS domain J172_04531 SM00267 diguanylate cyclase J172_04537 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase J172_04543 SM00014 Acid phosphatase homologues J172_04545 SM00028 Tetratricopeptide repeats