locus-tag	class	description
J4T80_00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
J4T80_00020	COG0187	DNA topoisomerase II activity
J4T80_00030	COG0501	Belongs to the peptidase M48B family
J4T80_00065	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
J4T80_00075	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J4T80_00120	COG0793	Belongs to the peptidase S41A family
J4T80_00125	COG4942	peptidase
J4T80_00135	COG2234	aminopeptidase activity
J4T80_00145	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
J4T80_00150	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
J4T80_00160	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
J4T80_00165	COG1064	alcohol dehydrogenase
J4T80_00170	COG0493	'glutamate synthase
J4T80_00175	COG0067	glutamate synthase
J4T80_00175	COG0069	glutamate synthase activity
J4T80_00175	COG0070	glutamate synthase
J4T80_00215	COG3328	transposase activity
J4T80_00255	COG1205	dead DEAH box helicase
J4T80_00255	COG1111	helicase
J4T80_00260	COG1272	protein, Hemolysin III
J4T80_00285	COG3039	Transposase
J4T80_00300	COG3039	Transposase
J4T80_00325	COG1262	PFAM Formylglycine-generating sulfatase enzyme
J4T80_00340	COG0517	IMP dehydrogenase activity
J4T80_00340	COG1125	glycine betaine transport
J4T80_00355	COG1119	ATPase activity
J4T80_00365	COG1752	Esterase of the alpha-beta hydrolase superfamily
J4T80_00375	COG1522	sequence-specific DNA binding
J4T80_00380	COG3186	Phenylalanine-4-hydroxylase
J4T80_00390	COG2755	lipolytic protein G-D-S-L family
J4T80_00400	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_00405	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
J4T80_00410	COG1609	Transcriptional regulator
J4T80_00415	COG3507	Belongs to the glycosyl hydrolase 43 family
J4T80_00430	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
J4T80_00440	COG0657	acetylesterase activity
J4T80_00440	COG2755	lipolytic protein G-D-S-L family
J4T80_00460	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
J4T80_00465	COG0366	Alpha amylase catalytic
J4T80_00470	COG0366	Alpha amylase catalytic
J4T80_00485	COG3039	Transposase
J4T80_00495	COG3039	Transposase
J4T80_00515	COG3328	transposase activity
J4T80_00540	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
J4T80_00545	COG3710	Transcriptional regulator
J4T80_00565	COG2197	response regulator
J4T80_00570	COG4585	Histidine kinase
J4T80_00580	COG1304	FMN binding
J4T80_00605	COG1012	belongs to the aldehyde dehydrogenase family
J4T80_00620	COG4772	TonB-dependent receptor
J4T80_00630	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
J4T80_00660	COG0714	Associated with various cellular activities
J4T80_00700	COG0477	Major facilitator Superfamily
J4T80_00705	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J4T80_00750	COG3237	CsbD-like
J4T80_00765	COG3039	Transposase
J4T80_00780	COG0489	protein tyrosine kinase activity
J4T80_00785	COG2062	phosphohistidine phosphatase, SixA
J4T80_00795	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J4T80_00840	COG1968	undecaprenyl-diphosphatase activity
J4T80_00845	COG0174	glutamine synthetase
J4T80_00850	COG0347	Belongs to the P(II) protein family
J4T80_00855	COG0004	ammonium transporteR
J4T80_00865	COG3852	Histidine kinase
J4T80_00870	COG2204	response regulator
J4T80_00875	COG2032	superoxide dismutase activity
J4T80_00880	COG2032	superoxide dismutase activity
J4T80_00890	COG3039	Transposase
J4T80_00905	COG0183	Belongs to the thiolase family
J4T80_00940	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
J4T80_00945	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
J4T80_00950	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
J4T80_00965	COG0028	Belongs to the TPP enzyme family
J4T80_00970	COG2205	protein histidine kinase activity
J4T80_00995	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
J4T80_01010	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J4T80_01020	COG0596	Alpha beta hydrolase
J4T80_01025	COG0727	PFAM Uncharacterised protein family (UPF0153)
J4T80_01030	COG0318	PFAM AMP-dependent synthetase and ligase
J4T80_01035	COG0745	RESPONSE REGULATOR receiver
J4T80_01045	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J4T80_01065	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
J4T80_01075	COG0564	pseudouridine synthase activity
J4T80_01095	COG1446	asparaginase
J4T80_01100	COG0339	signal peptide processing
J4T80_01135	COG0475	glutathione-regulated potassium exporter activity
J4T80_01140	COG0583	DNA-binding transcription factor activity
J4T80_01145	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
J4T80_01150	COG2224	Isocitrate lyase
J4T80_01180	COG4770	biotin carboxylase activity
J4T80_01185	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
J4T80_01190	COG1960	acyl-CoA dehydrogenase activity
J4T80_01255	COG0697	spore germination
J4T80_01265	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
J4T80_01270	COG1846	Transcriptional regulator
J4T80_01275	COG1764	response to oxidative stress
J4T80_01300	COG2130	NADP-dependent
J4T80_01315	COG1187	pseudouridine synthase activity
J4T80_01330	COG1643	Atp-dependent helicase
J4T80_01335	COG4807	Protein conserved in bacteria
J4T80_01340	COG2351	hydroxyisourate hydrolase activity
J4T80_01345	COG2072	flavoprotein involved in K transport
J4T80_01365	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
J4T80_01375	COG0583	DNA-binding transcription factor activity
J4T80_01410	COG2252	PERMEase
J4T80_01430	COG0084	hydrolase, TatD family'
J4T80_01440	COG0583	DNA-binding transcription factor activity
J4T80_01445	COG2814	Major facilitator Superfamily
J4T80_01455	COG2267	carboxylic ester hydrolase activity
J4T80_01460	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
J4T80_01465	COG1902	pentaerythritol trinitrate reductase activity
J4T80_01485	COG0745	RESPONSE REGULATOR receiver
J4T80_01490	COG2205	protein histidine kinase activity
J4T80_01495	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4T80_01515	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
J4T80_01520	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
J4T80_01525	COG0583	DNA-binding transcription factor activity
J4T80_01555	COG0702	epimerase
J4T80_01560	COG1733	regulation of RNA biosynthetic process
J4T80_01565	COG3328	transposase activity
J4T80_01575	COG3328	transposase activity
J4T80_01590	COG0129	dihydroxy-acid dehydratase activity
J4T80_01605	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
J4T80_01660	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
J4T80_01665	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
J4T80_01690	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
J4T80_01695	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
J4T80_01705	COG3485	protocatechuate 3,4-dioxygenase
J4T80_01710	COG3485	protocatechuate 3,4-dioxygenase
J4T80_01720	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J4T80_01725	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
J4T80_01735	COG1414	Transcriptional regulator
J4T80_01745	COG0657	acetylesterase activity
J4T80_01755	COG0445	tRNA wobble uridine modification
J4T80_01765	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
J4T80_01790	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_01795	COG2267	carboxylic ester hydrolase activity
J4T80_01805	COG0156	8-amino-7-oxononanoate synthase activity
J4T80_01810	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
J4T80_01815	COG1040	competence protein
J4T80_01820	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
J4T80_01905	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
J4T80_01975	COG1511	domain protein
J4T80_01975	COG3264	Mechanosensitive ion channel
J4T80_01980	COG1368	sulfuric ester hydrolase activity
J4T80_01985	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
J4T80_01990	COG2354	Protein conserved in bacteria
J4T80_02000	COG0297	glycogen (starch) synthase activity
J4T80_02005	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
J4T80_02010	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
J4T80_02035	COG0702	epimerase
J4T80_02040	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_02070	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J4T80_02075	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_02085	COG0513	Belongs to the DEAD box helicase family
J4T80_02090	COG0508	dehydrogenase complex catalyzes the overall conversion of
J4T80_02105	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
J4T80_02115	COG3483	tryptophan 2,3-dioxygenase activity
J4T80_02120	COG3104	oligopeptide transport
J4T80_02155	COG1320	monovalent cation:proton antiporter activity
J4T80_02160	COG2212	antiporter activity
J4T80_02170	COG0651	ATP synthesis coupled electron transport
J4T80_02175	COG1006	Multisubunit Na H antiporter MnhC subunit
J4T80_02180	COG2111	Na H antiporter
J4T80_02180	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
J4T80_02205	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
J4T80_02210	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
J4T80_02225	COG0456	acetyltransferase
J4T80_02230	COG1597	lipid kinase activity
J4T80_02250	COG0582	viral genome integration into host DNA
J4T80_02255	COG3039	Transposase
J4T80_02270	COG3039	Transposase
J4T80_02290	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
J4T80_02295	COG0134	indole-3-glycerol-phosphate synthase activity
J4T80_02305	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J4T80_02310	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
J4T80_02320	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
J4T80_02330	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
J4T80_02345	COG1051	belongs to the nudix hydrolase family
J4T80_02385	COG0316	Belongs to the HesB IscA family
J4T80_02400	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
J4T80_02415	COG2814	Major facilitator Superfamily
J4T80_02425	COG2814	Major facilitator Superfamily
J4T80_02430	COG1289	transmembrane transporter activity
J4T80_02435	COG0151	Belongs to the GarS family
J4T80_02445	COG0138	bifunctional purine biosynthesis protein purh
J4T80_02450	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
J4T80_02465	COG2453	phosphatase
J4T80_02465	COG0671	phosphoesterase, PA-phosphatase related
J4T80_02500	COG4589	Belongs to the CDS family
J4T80_02505	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
J4T80_02530	COG2264	protein methyltransferase activity
J4T80_02550	COG0439	Biotin carboxylase
J4T80_02560	COG0511	ligase activity, forming carbon-carbon bonds
J4T80_02565	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
J4T80_02575	COG1324	tolerance protein
J4T80_02585	COG2356	endonuclease I
J4T80_02595	COG0459	protein refolding
J4T80_02610	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
J4T80_02625	COG3386	PFAM SMP-30 Gluconolaconase
J4T80_02635	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
J4T80_02640	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
J4T80_02665	COG0778	Nitroreductase
J4T80_02670	COG2353	YceI-like domain
J4T80_02695	COG3052	prosthetic group binding
J4T80_02720	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
J4T80_02735	COG3039	Transposase
J4T80_02765	COG3328	transposase activity
J4T80_02815	COG1802	Transcriptional regulator
J4T80_02855	COG3039	Transposase
J4T80_02890	COG3328	transposase activity
J4T80_02910	COG3039	Transposase
J4T80_02945	COG3039	Transposase
J4T80_02950	COG3039	Transposase
J4T80_02960	COG3328	transposase activity
J4T80_02970	COG4221	oxidoreductase activity
J4T80_02985	COG4221	oxidoreductase activity
J4T80_02995	COG0435	Glutathione S-transferase
J4T80_03030	COG0823	Involved in the tonB-independent uptake of proteins
J4T80_03030	COG1506	peptidase
J4T80_03065	COG0697	spore germination
J4T80_03080	COG1113	amino acid transport
J4T80_03100	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
J4T80_03145	COG0840	transmembrane signaling receptor activity
J4T80_03150	COG5297	Belongs to the glycosyl hydrolase family 6
J4T80_03150	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
J4T80_03155	COG0659	secondary active sulfate transmembrane transporter activity
J4T80_03170	COG2943	transferase activity, transferring hexosyl groups
J4T80_03180	COG3275	phosphorelay sensor kinase activity
J4T80_03190	COG0181	hydroxymethylbilane synthase activity
J4T80_03215	COG1505	serine-type exopeptidase activity
J4T80_03220	COG0436	Aminotransferase
J4T80_03230	COG2832	Protein of unknown function (DUF454)
J4T80_03240	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
J4T80_03250	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
J4T80_03255	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
J4T80_03260	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
J4T80_03285	COG2226	methyltransferase
J4T80_03290	COG5001	Diguanylate cyclase
J4T80_03290	COG3300	MHYT domain
J4T80_03295	COG0308	aminopeptidase N
J4T80_03340	COG3284	Transcriptional regulator
J4T80_03345	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J4T80_03350	COG1077	Cell shape determining protein MreB Mrl
J4T80_03355	COG1792	Involved in formation and maintenance of cell shape
J4T80_03370	COG0772	Belongs to the SEDS family
J4T80_03380	COG2951	lytic endotransglycosylase activity
J4T80_03385	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
J4T80_03390	COG1686	Belongs to the peptidase S11 family
J4T80_03400	COG2921	Belongs to the UPF0250 family
J4T80_03405	COG0321	lipoyl(octanoyl) transferase activity
J4T80_03410	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
J4T80_03425	COG0583	DNA-binding transcription factor activity
J4T80_03435	COG1051	belongs to the nudix hydrolase family
J4T80_03435	COG1056	cytidyltransferase-related domain
J4T80_03470	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
J4T80_03475	COG0673	inositol 2-dehydrogenase activity
J4T80_03480	COG2823	Periplasmic or secreted lipoprotein
J4T80_03485	COG4251	negative regulation of phosphorylation
J4T80_03490	COG0784	Response regulator, receiver
J4T80_03495	COG4191	Histidine kinase
J4T80_03500	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
J4T80_03555	COG1459	type II secretion system
J4T80_03560	COG2165	general secretion pathway protein
J4T80_03575	COG4795	General secretion pathway protein
J4T80_03605	COG3250	beta-galactosidase activity
J4T80_03620	COG2188	Transcriptional regulator
J4T80_03630	COG1609	Transcriptional regulator
J4T80_03635	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
J4T80_03640	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
J4T80_03655	COG0617	tRNA 3'-terminal CCA addition
J4T80_03660	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
J4T80_03665	COG1012	belongs to the aldehyde dehydrogenase family
J4T80_03670	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J4T80_03685	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
J4T80_03700	COG0218	Necessary for normal cell division and for the maintenance of normal septation
J4T80_03720	COG2205	protein histidine kinase activity
J4T80_03750	COG3791	Glutathione-dependent formaldehyde-activating
J4T80_03765	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J4T80_03785	COG0488	(ABC) transporter
J4T80_03795	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
J4T80_03800	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
J4T80_03810	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J4T80_03810	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J4T80_03830	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
J4T80_03835	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
J4T80_03840	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
J4T80_03860	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
J4T80_03865	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
J4T80_03870	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
J4T80_03875	COG2205	protein histidine kinase activity
J4T80_03880	COG0745	RESPONSE REGULATOR receiver
J4T80_03885	COG0277	FAD linked oxidase domain protein
J4T80_03890	COG1988	membrane-bound metal-dependent
J4T80_03895	COG0792	nuclease activity
J4T80_03925	COG0275	rRNA processing
J4T80_03930	COG3116	cell division
J4T80_03940	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
J4T80_03945	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
J4T80_03950	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
J4T80_03960	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
J4T80_03965	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
J4T80_03970	COG1181	Belongs to the D-alanine--D-alanine ligase family
J4T80_03975	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
J4T80_03990	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
J4T80_04000	COG0739	heme binding
J4T80_04005	COG0653	protein targeting
J4T80_04010	COG0494	nUDIX hydrolase
J4T80_04020	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
J4T80_04030	COG3328	transposase activity
J4T80_04040	COG0604	alcohol dehydrogenase
J4T80_04040	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_04040	COG3321	synthase
J4T80_04060	COG0366	Alpha amylase catalytic
J4T80_04095	COG2226	methyltransferase
J4T80_04100	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
J4T80_04110	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
J4T80_04150	COG3039	Transposase
J4T80_04155	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
J4T80_04165	COG4106	trans-aconitate 2-methyltransferase activity
J4T80_04170	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J4T80_04180	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J4T80_04185	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
J4T80_04200	COG0667	Aldo Keto reductase
J4T80_04210	COG4771	TonB-dependent receptor
J4T80_04230	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J4T80_04235	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
J4T80_04245	COG2175	clavaminate synthase activity
J4T80_04255	COG4181	ATPase activity
J4T80_04270	COG0642	Histidine kinase
J4T80_04280	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
J4T80_04300	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
J4T80_04305	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
J4T80_04320	COG3829	transcription factor binding
J4T80_04330	COG1116	anion transmembrane transporter activity
J4T80_04335	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J4T80_04345	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J4T80_04350	COG0431	NADPH-dependent FMN reductase
J4T80_04375	COG0747	negative chemotaxis
J4T80_04385	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J4T80_04395	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
J4T80_04400	COG2967	ApaG domain
J4T80_04405	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
J4T80_04410	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
J4T80_04415	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J4T80_04420	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
J4T80_04430	COG0123	including yeast histone deacetylase and acetoin utilization protein
J4T80_04435	COG2096	Adenosyltransferase
J4T80_04450	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J4T80_04455	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J4T80_04485	COG3384	dioxygenase
J4T80_04490	COG0583	DNA-binding transcription factor activity
J4T80_04505	COG1024	Enoyl-CoA hydratase
J4T80_04535	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
J4T80_04560	COG0697	spore germination
J4T80_04570	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J4T80_04595	COG2197	response regulator
J4T80_04605	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J4T80_04615	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
J4T80_04620	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J4T80_04625	COG0583	DNA-binding transcription factor activity
J4T80_04630	COG3634	alkyl hydroperoxide reductase activity
J4T80_04640	COG2890	protein-(glutamine-N5) methyltransferase activity
J4T80_04660	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J4T80_04660	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J4T80_04685	COG3328	transposase activity
J4T80_04745	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
J4T80_04750	COG1404	Belongs to the peptidase S8 family
J4T80_04755	COG1404	Belongs to the peptidase S8 family
J4T80_04760	COG1404	Belongs to the peptidase S8 family
J4T80_04765	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
J4T80_04790	COG1295	ribonuclease BN
J4T80_04795	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J4T80_04800	COG1254	Belongs to the acylphosphatase family
J4T80_04815	COG0521	Mo-molybdopterin cofactor biosynthetic process
J4T80_04825	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
J4T80_04830	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
J4T80_04840	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
J4T80_04845	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
J4T80_04855	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
J4T80_04860	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
J4T80_04865	COG0193	aminoacyl-tRNA hydrolase activity
J4T80_04870	COG0012	GTP binding
J4T80_04890	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
J4T80_04905	COG0250	Participates in transcription elongation, termination and antitermination
J4T80_04910	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
J4T80_04915	COG0081	regulation of translation
J4T80_04920	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
J4T80_04925	COG0222	ribosome binding
J4T80_04930	COG0085	RNA polymerase activity
J4T80_04935	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
J4T80_04940	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
J4T80_04945	COG0049	tRNA binding
J4T80_04950	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
J4T80_04955	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
J4T80_04960	COG0051	transcription antitermination factor activity, RNA binding
J4T80_04965	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
J4T80_04970	COG0088	Forms part of the polypeptide exit tunnel
J4T80_04975	COG0089	rRNA binding
J4T80_04980	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
J4T80_04985	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
J4T80_04995	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
J4T80_05000	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
J4T80_05005	COG0255	Belongs to the universal ribosomal protein uL29 family
J4T80_05010	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
J4T80_05020	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
J4T80_05025	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
J4T80_05035	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
J4T80_05040	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
J4T80_05045	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
J4T80_05055	COG1841	ribosomal large subunit assembly
J4T80_05060	COG0200	Binds to the 23S rRNA
J4T80_05065	COG0201	protein transport
J4T80_05090	COG0203	ribosomal protein L17
J4T80_05095	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
J4T80_05110	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
J4T80_05125	COG0154	amidase activity
J4T80_05135	COG1217	gtp-binding protein TYPA
J4T80_05140	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J4T80_05145	COG0039	L-malate dehydrogenase activity
J4T80_05150	COG0625	glutathione transferase activity
J4T80_05160	COG0446	pyridine nucleotide-disulphide oxidoreductase
J4T80_05160	COG1902	pentaerythritol trinitrate reductase activity
J4T80_05165	COG0604	alcohol dehydrogenase
J4T80_05190	COG0156	8-amino-7-oxononanoate synthase activity
J4T80_05200	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
J4T80_05205	COG4208	sulfate ABC transporter
J4T80_05210	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
J4T80_05240	COG0406	alpha-ribazole phosphatase activity
J4T80_05245	COG0285	dihydrofolate synthase activity
J4T80_05265	COG2833	Protein of unknown function (DUF455)
J4T80_05280	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J4T80_05285	COG0671	phosphoesterase, PA-phosphatase related
J4T80_05290	COG0438	transferase activity, transferring glycosyl groups
J4T80_05300	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
J4T80_05315	COG4783	chaperone-mediated protein folding
J4T80_05330	COG0473	3-isopropylmalate dehydrogenase activity
J4T80_05370	COG0544	peptidyl-prolyl cis-trans isomerase activity
J4T80_05380	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
J4T80_05410	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J4T80_05420	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J4T80_05430	COG0328	RNA-DNA hybrid ribonuclease activity
J4T80_05435	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
J4T80_05440	COG0631	protein serine/threonine phosphatase activity
J4T80_05455	COG0859	PFAM glycosyl transferase family 9
J4T80_05460	COG3642	lipopolysaccharide core region biosynthetic process
J4T80_05465	COG1234	tRNA 3'-trailer cleavage
J4T80_05470	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
J4T80_05480	COG0315	cyclic pyranopterin monophosphate synthase activity
J4T80_05485	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
J4T80_05490	COG0314	molybdopterin synthase activity
J4T80_05510	COG3328	transposase activity
J4T80_05535	COG3039	Transposase
J4T80_05540	COG3328	transposase activity
J4T80_05570	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
J4T80_05575	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
J4T80_05580	COG0537	adenosine 5'-monophosphoramidase activity
J4T80_05600	COG0714	Associated with various cellular activities
J4T80_05625	COG0424	maF-like protein
J4T80_05630	COG1399	metal-binding, possibly nucleic acid-binding protein
J4T80_05640	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J4T80_05650	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
J4T80_05655	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_05670	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
J4T80_05675	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
J4T80_05700	COG3829	transcription factor binding
J4T80_05740	COG2373	Large extracellular alpha-helical protein
J4T80_05755	COG4953	penicillin-binding protein 1C
J4T80_05765	COG0678	peroxiredoxin activity
J4T80_05785	COG0330	HflC and HflK could
J4T80_05790	COG0330	HflC and HflK could
J4T80_05800	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
J4T80_05815	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_05820	COG1309	transcriptional regulator
J4T80_05850	COG3328	transposase activity
J4T80_05870	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
J4T80_05900	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
J4T80_05910	COG3039	Transposase
J4T80_05915	COG3387	PFAM Glycoside hydrolase 15-related
J4T80_05920	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_05925	COG3537	Alpha-1,2-mannosidase
J4T80_05930	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_05945	COG0492	ferredoxin-NADP+ reductase activity
J4T80_05980	COG1529	Aldehyde oxidase and xanthine dehydrogenase
J4T80_05985	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
J4T80_05990	COG2080	2 iron, 2 sulfur cluster binding
J4T80_06025	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
J4T80_06040	COG0587	DNA-directed DNA polymerase activity
J4T80_06060	COG1297	OPT oligopeptide transporter protein
J4T80_06075	COG0823	Involved in the tonB-independent uptake of proteins
J4T80_06075	COG1506	peptidase
J4T80_06090	COG1917	Cupin 2, conserved barrel domain protein
J4T80_06090	COG2207	Transcriptional regulator
J4T80_06110	COG0753	catalase activity
J4T80_06115	COG0656	L-ascorbic acid biosynthetic process
J4T80_06125	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
J4T80_06125	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
J4T80_06130	COG2814	Major facilitator Superfamily
J4T80_06145	COG2194	sulfuric ester hydrolase activity
J4T80_06160	COG0745	RESPONSE REGULATOR receiver
J4T80_06165	COG0642	Histidine kinase
J4T80_06175	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
J4T80_06180	COG2894	cell division
J4T80_06185	COG0850	regulation of cytokinetic process
J4T80_06195	COG4585	Histidine kinase
J4T80_06200	COG2197	response regulator
J4T80_06215	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
J4T80_06240	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
J4T80_06250	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
J4T80_06270	COG1946	Acyl-CoA thioesterase
J4T80_06285	COG0824	Thioesterase
J4T80_06290	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
J4T80_06295	COG0261	This protein binds to 23S rRNA in the presence of protein L20
J4T80_06300	COG0211	Belongs to the bacterial ribosomal protein bL27 family
J4T80_06305	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
J4T80_06310	COG0268	Binds directly to 16S ribosomal RNA
J4T80_06320	COG0196	riboflavin kinase activity
J4T80_06325	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
J4T80_06330	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
J4T80_06335	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
J4T80_06360	COG3328	transposase activity
J4T80_06380	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
J4T80_06385	COG1845	cytochrome c oxidase, subunit III
J4T80_06390	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
J4T80_06405	COG3152	Membrane
J4T80_06415	COG2207	Transcriptional regulator
J4T80_06420	COG0326	Molecular chaperone. Has ATPase activity
J4T80_06430	COG1366	Belongs to the anti-sigma-factor antagonist family
J4T80_06435	COG1366	Belongs to the anti-sigma-factor antagonist family
J4T80_06440	COG2172	sigma factor antagonist activity
J4T80_06465	COG4771	TonB-dependent receptor
J4T80_06475	COG5507	3-demethylubiquinone-9 3-methyltransferase
J4T80_06480	COG2205	protein histidine kinase activity
J4T80_06490	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
J4T80_06495	COG2205	protein histidine kinase activity
J4T80_06495	COG3850	Histidine kinase
J4T80_06495	COG3437	response regulator, receiver
J4T80_06495	COG4999	Histidine kinase
J4T80_06500	COG0784	Response regulator, receiver
J4T80_06500	COG4191	Histidine kinase
J4T80_06530	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
J4T80_06535	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
J4T80_06550	COG0228	four-way junction DNA binding
J4T80_06555	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
J4T80_06560	COG0336	Belongs to the RNA methyltransferase TrmD family
J4T80_06565	COG0335	large ribosomal subunit rRNA binding
J4T80_06570	COG0534	Mate efflux family protein
J4T80_06590	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
J4T80_06600	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
J4T80_06615	COG3328	transposase activity
J4T80_06630	COG3250	beta-galactosidase activity
J4T80_06635	COG3867	Arabinogalactan endo-beta-1,4-galactanase
J4T80_06655	COG1960	acyl-CoA dehydrogenase activity
J4T80_06660	COG1024	Enoyl-CoA hydratase
J4T80_06695	COG2801	Transposase and inactivated derivatives
J4T80_06705	COG1024	Enoyl-CoA hydratase
J4T80_06705	COG1250	3-hydroxyacyl-CoA dehydrogenase
J4T80_06720	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J4T80_06725	COG0481	GTPase activity
J4T80_06740	COG0571	ribonuclease III activity
J4T80_06745	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
J4T80_06750	COG1381	Involved in DNA repair and RecF pathway recombination
J4T80_06760	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
J4T80_06765	COG2954	triphosphatase activity
J4T80_06770	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
J4T80_06775	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
J4T80_06780	COG3046	protein related to deoxyribodipyrimidine photolyase
J4T80_06785	COG1472	Belongs to the glycosyl hydrolase 3 family
J4T80_06790	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
J4T80_06795	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
J4T80_06800	COG1278	Cold shock
J4T80_06805	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J4T80_06815	COG1201	RNA secondary structure unwinding
J4T80_06820	COG1793	dna ligase
J4T80_06830	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
J4T80_06830	COG1793	dna ligase
J4T80_06860	COG0183	Belongs to the thiolase family
J4T80_06885	COG1451	nucleotide metabolic process
J4T80_06890	COG5487	UPF0391 membrane protein
J4T80_06900	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
J4T80_06915	COG1077	Cell shape determining protein MreB Mrl
J4T80_06920	COG1047	Peptidyl-prolyl cis-trans
J4T80_06930	COG2824	Alkylphosphonate utilization operon protein PhnA
J4T80_06935	COG1902	pentaerythritol trinitrate reductase activity
J4T80_06940	COG2814	Major facilitator Superfamily
J4T80_06960	COG3328	transposase activity
J4T80_06985	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
J4T80_06985	COG0392	lysyltransferase activity
J4T80_06995	COG0251	oxidation-reduction process
J4T80_07000	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
J4T80_07015	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
J4T80_07040	COG1595	DNA-templated transcription, initiation
J4T80_07055	COG2878	Part of a membrane complex involved in electron transport
J4T80_07065	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J4T80_07065	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J4T80_07080	COG3039	Transposase
J4T80_07085	COG1131	(ABC) transporter
J4T80_07090	COG0346	lactoylglutathione lyase activity
J4T80_07095	COG0833	amino acid
J4T80_07100	COG2040	homocysteine
J4T80_07110	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
J4T80_07130	COG1695	Transcriptional regulator
J4T80_07150	COG1981	membrane
J4T80_07165	COG0825	malonyl-CoA metabolic process
J4T80_07180	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J4T80_07185	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J4T80_07190	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
J4T80_07195	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J4T80_07210	COG0750	zinc metalloprotease
J4T80_07215	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
J4T80_07220	COG0575	Belongs to the CDS family
J4T80_07225	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
J4T80_07230	COG0233	cytoplasmic translational termination
J4T80_07235	COG0528	UMP kinase activity
J4T80_07245	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
J4T80_07250	COG0052	Belongs to the universal ribosomal protein uS2 family
J4T80_07290	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
J4T80_07300	COG1393	Belongs to the ArsC family
J4T80_07305	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
J4T80_07310	COG0367	asparagine synthase
J4T80_07320	COG4774	siderophore transport
J4T80_07335	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
J4T80_07360	COG1566	PFAM secretion protein HlyD family protein
J4T80_07365	COG2814	Major facilitator Superfamily
J4T80_07415	COG0339	signal peptide processing
J4T80_07420	COG0386	Belongs to the glutathione peroxidase family
J4T80_07475	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
J4T80_07480	COG0084	hydrolase, TatD family'
J4T80_07495	COG1960	acyl-CoA dehydrogenase activity
J4T80_07510	COG0367	asparagine synthase
J4T80_07520	COG0305	Participates in initiation and elongation during chromosome replication
J4T80_07525	COG0415	Belongs to the DNA photolyase family
J4T80_07535	COG0583	DNA-binding transcription factor activity
J4T80_07580	COG3706	GGDEF domain
J4T80_07595	COG3328	transposase activity
J4T80_07600	COG0582	viral genome integration into host DNA
J4T80_07615	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
J4T80_07630	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J4T80_07640	COG0497	DNA recombination
J4T80_07645	COG1420	regulation of RNA biosynthetic process
J4T80_07650	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
J4T80_07655	COG0443	Heat shock 70 kDa protein
J4T80_07660	COG0484	heat shock protein binding
J4T80_07665	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
J4T80_07695	COG0583	DNA-binding transcription factor activity
J4T80_07700	COG1132	(ABC) transporter
J4T80_07725	COG0567	Dehydrogenase, E1 component
J4T80_07735	COG2850	peptidyl-arginine hydroxylation
J4T80_07755	COG1253	flavin adenine dinucleotide binding
J4T80_07785	COG1131	(ABC) transporter
J4T80_07790	COG1725	Transcriptional regulator
J4T80_07800	COG0386	Belongs to the glutathione peroxidase family
J4T80_07815	COG2900	Belongs to the SlyX family
J4T80_07840	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J4T80_07850	COG0646	methionine synthase
J4T80_07850	COG1410	methionine synthase
J4T80_07855	COG1410	methionine synthase
J4T80_07855	COG0646	methionine synthase
J4T80_07860	COG2226	methyltransferase
J4T80_07865	COG1960	acyl-CoA dehydrogenase activity
J4T80_07885	COG0557	exoribonuclease II activity
J4T80_07895	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J4T80_07905	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
J4T80_07915	COG0704	Plays a role in the regulation of phosphate uptake
J4T80_07920	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J4T80_07925	COG0581	inorganic phosphate transmembrane transporter activity
J4T80_07930	COG0573	inorganic phosphate transmembrane transporter activity
J4T80_07935	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
J4T80_07960	COG0659	secondary active sulfate transmembrane transporter activity
J4T80_07965	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
J4T80_07975	COG1024	Enoyl-CoA hydratase
J4T80_07985	COG0494	nUDIX hydrolase
J4T80_08020	COG0488	(ABC) transporter
J4T80_08030	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
J4T80_08030	COG0116	Belongs to the methyltransferase superfamily
J4T80_08035	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
J4T80_08060	COG2925	Exonuclease
J4T80_08065	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J4T80_08070	COG3844	kynureninase activity
J4T80_08080	COG0662	Cupin 2, conserved barrel domain protein
J4T80_08085	COG0288	reversible hydration of carbon dioxide
J4T80_08135	COG3039	Transposase
J4T80_08145	COG3039	Transposase
J4T80_08175	COG0017	Asparaginyl-tRNA synthetase
J4T80_08180	COG0316	Belongs to the HesB IscA family
J4T80_08185	COG0360	Binds together with S18 to 16S ribosomal RNA
J4T80_08190	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
J4T80_08195	COG0359	binds to the 23S rRNA
J4T80_08210	COG3115	cell septum assembly
J4T80_08220	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
J4T80_08225	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
J4T80_08230	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
J4T80_08240	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
J4T80_08250	COG4993	Dehydrogenase
J4T80_08260	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
J4T80_08270	COG2986	histidine ammonia-lyase
J4T80_08275	COG1228	amidohydrolase
J4T80_08310	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
J4T80_08315	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
J4T80_08320	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
J4T80_08325	COG0077	Prephenate dehydratase
J4T80_08325	COG1605	Chorismate mutase
J4T80_08330	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
J4T80_08345	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
J4T80_08350	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
J4T80_08355	COG0583	DNA-binding transcription factor activity
J4T80_08370	COG3039	Transposase
J4T80_08385	COG0840	transmembrane signaling receptor activity
J4T80_08410	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
J4T80_08415	COG0784	Response regulator, receiver
J4T80_08415	COG4191	Histidine kinase
J4T80_08430	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J4T80_08440	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
J4T80_08450	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
J4T80_08465	COG1595	DNA-templated transcription, initiation
J4T80_08515	COG2244	polysaccharide biosynthetic process
J4T80_08545	COG2264	protein methyltransferase activity
J4T80_08570	COG1136	(ABC) transporter
J4T80_08600	COG1253	flavin adenine dinucleotide binding
J4T80_08610	COG0306	phosphate transporter
J4T80_08635	COG0504	CTP synthase activity
J4T80_08650	COG0148	phosphopyruvate hydratase activity
J4T80_08655	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
J4T80_08660	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
J4T80_08665	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
J4T80_08670	COG0585	pseudouridine synthase activity
J4T80_08675	COG2840	Smr protein MutS2
J4T80_08680	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
J4T80_08685	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
J4T80_08690	COG1238	metal cluster binding
J4T80_08705	COG1534	Rna-binding protein
J4T80_08710	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
J4T80_08720	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
J4T80_08725	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
J4T80_08735	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
J4T80_08740	COG1546	Belongs to the CinA family
J4T80_08750	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
J4T80_08755	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
J4T80_08760	COG2137	regulation of response to DNA damage stimulus
J4T80_08765	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
J4T80_08770	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
J4T80_08785	COG1741	Belongs to the pirin family
J4T80_08790	COG0583	DNA-binding transcription factor activity
J4T80_08815	COG0351	phosphomethylpyrimidine kinase
J4T80_08830	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
J4T80_08835	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
J4T80_08850	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J4T80_08860	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
J4T80_08865	COG3734	2-keto-3-deoxy-galactonokinase
J4T80_08875	COG4948	Mandelate Racemase Muconate Lactonizing
J4T80_08880	COG0800	Aldolase
J4T80_08915	COG1501	Belongs to the glycosyl hydrolase 31 family
J4T80_08925	COG1070	Carbohydrate kinase
J4T80_08930	COG2115	Belongs to the xylose isomerase family
J4T80_08935	COG0477	Major facilitator Superfamily
J4T80_08945	COG3328	transposase activity
J4T80_08960	COG1082	Xylose isomerase domain protein TIM barrel
J4T80_08970	COG2190	(PTS) system
J4T80_08970	COG2211	Major facilitator Superfamily
J4T80_08985	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
J4T80_08990	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
J4T80_09005	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
J4T80_09010	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J4T80_09010	COG0072	phenylalanine-tRNA ligase activity
J4T80_09060	COG0438	transferase activity, transferring glycosyl groups
J4T80_09065	COG0438	transferase activity, transferring glycosyl groups
J4T80_09075	COG0438	transferase activity, transferring glycosyl groups
J4T80_09100	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J4T80_09105	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J4T80_09110	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J4T80_09130	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
J4T80_09140	COG1960	acyl-CoA dehydrogenase activity
J4T80_09150	COG3040	lipid binding
J4T80_09160	COG0582	viral genome integration into host DNA
J4T80_09170	COG3039	Transposase
J4T80_09185	COG3039	Transposase
J4T80_09205	COG3039	Transposase
J4T80_09220	COG0322	excinuclease ABC activity
J4T80_09235	COG0784	Response regulator, receiver
J4T80_09235	COG4191	Histidine kinase
J4T80_09240	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
J4T80_09245	COG1194	a g-specific adenine glycosylase
J4T80_09250	COG0552	protein localization to endoplasmic reticulum
J4T80_09260	COG3938	Belongs to the proline racemase family
J4T80_09265	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J4T80_09280	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J4T80_09290	COG0006	proline dipeptidase activity
J4T80_09305	COG0531	amino acid
J4T80_09375	COG3328	transposase activity
J4T80_09380	COG0326	Molecular chaperone. Has ATPase activity
J4T80_09385	COG0742	ribosomal rna small subunit methyltransferase
J4T80_09390	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
J4T80_09400	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
J4T80_09405	COG0405	Gamma-glutamyltransferase
J4T80_09410	COG3291	Pkd domain containing protein
J4T80_09415	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
J4T80_09450	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
J4T80_09455	COG0343	queuine tRNA-ribosyltransferase activity
J4T80_09460	COG1862	Preprotein translocase
J4T80_09470	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J4T80_09485	COG3039	Transposase
J4T80_09520	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4T80_09520	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J4T80_09525	COG1105	Belongs to the carbohydrate kinase PfkB family
J4T80_09530	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
J4T80_09530	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4T80_09535	COG1609	Transcriptional regulator
J4T80_09540	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J4T80_09545	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4T80_09555	COG2902	Dehydrogenase
J4T80_09565	COG0604	alcohol dehydrogenase
J4T80_09565	COG3321	synthase
J4T80_09575	COG1902	pentaerythritol trinitrate reductase activity
J4T80_09590	COG3039	Transposase
J4T80_09605	COG0477	Major facilitator Superfamily
J4T80_09620	COG0784	Response regulator, receiver
J4T80_09620	COG2205	protein histidine kinase activity
J4T80_09620	COG5002	protein histidine kinase activity
J4T80_09625	COG2733	membrane
J4T80_09635	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
J4T80_09640	COG2223	nitrite transmembrane transporter activity
J4T80_09645	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
J4T80_09650	COG0243	molybdopterin cofactor binding
J4T80_09660	COG0477	Major facilitator Superfamily
J4T80_09665	COG2703	oxygen carrier activity
J4T80_09675	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J4T80_09680	COG0174	glutamine synthetase
J4T80_09685	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
J4T80_09705	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
J4T80_09735	COG1176	ABC-type spermidine putrescine transport system, permease component I
J4T80_09740	COG1177	transmembrane transport
J4T80_09745	COG1012	belongs to the aldehyde dehydrogenase family
J4T80_09760	COG4535	Mg2 and Co2 transporter CorC
J4T80_09770	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
J4T80_09780	COG1702	phosphate starvation-inducible protein PhoH
J4T80_09785	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
J4T80_09800	COG0741	lytic transglycosylase activity
J4T80_09805	COG0723	plastoquinol--plastocyanin reductase activity
J4T80_09810	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
J4T80_09815	COG2857	Cytochrome c1
J4T80_09820	COG0625	glutathione transferase activity
J4T80_09825	COG2969	positive regulation of protein catabolic process
J4T80_09845	COG1201	RNA secondary structure unwinding
J4T80_09850	COG2094	Belongs to the DNA glycosylase MPG family
J4T80_09855	COG0840	transmembrane signaling receptor activity
J4T80_09860	COG0835	chemotaxis
J4T80_09905	COG1262	PFAM Formylglycine-generating sulfatase enzyme
J4T80_09915	COG1570	exodeoxyribonuclease VII activity
J4T80_09920	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
J4T80_09925	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
J4T80_09925	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
J4T80_09930	COG0802	atpase or kinase
J4T80_09935	COG0860	N-Acetylmuramoyl-L-alanine amidase
J4T80_09940	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
J4T80_09965	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_09970	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J4T80_09975	COG0501	Belongs to the peptidase M48B family
J4T80_09985	COG2081	HI0933 family
J4T80_09990	COG4681	YaeQ
J4T80_10000	COG0625	glutathione transferase activity
J4T80_10010	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
J4T80_10015	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
J4T80_10020	COG0513	Belongs to the DEAD box helicase family
J4T80_10025	COG0488	(ABC) transporter
J4T80_10040	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
J4T80_10045	COG0483	inositol monophosphate 1-phosphatase activity
J4T80_10060	COG5001	Diguanylate cyclase
J4T80_10060	COG3300	MHYT domain
J4T80_10065	COG1509	lysine 2,3-aminomutase activity
J4T80_10070	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
J4T80_10080	COG0402	S-adenosylhomocysteine deaminase activity
J4T80_10085	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
J4T80_10150	COG4302	ethanolamine ammonia-lyase activity
J4T80_10175	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
J4T80_10180	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
J4T80_10195	COG2166	iron-sulfur cluster assembly
J4T80_10200	COG0215	cysteine-tRNA ligase activity
J4T80_10210	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
J4T80_10215	COG0137	argininosuccinate synthase activity
J4T80_10225	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
J4T80_10230	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
J4T80_10240	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
J4T80_10245	COG0165	Argininosuccinate lyase
J4T80_10255	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
J4T80_10260	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
J4T80_10290	COG1294	oxidase, subunit
J4T80_10305	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
J4T80_10310	COG1278	Cold shock
J4T80_10315	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J4T80_10335	COG1138	Cytochrome C-type biogenesis protein
J4T80_10340	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
J4T80_10360	COG4133	protoheme IX ABC transporter activity
J4T80_10365	COG0436	Aminotransferase
J4T80_10385	COG1187	pseudouridine synthase activity
J4T80_10390	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
J4T80_10395	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
J4T80_10400	COG2350	Protein conserved in bacteria
J4T80_10430	COG1175	transmembrane transport
J4T80_10435	COG0395	ABC-type sugar transport system, permease component
J4T80_10460	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
J4T80_10465	COG2957	Belongs to the agmatine deiminase family
J4T80_10480	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
J4T80_10485	COG0539	negative regulation of cytoplasmic translation
J4T80_10490	COG0776	regulation of translation
J4T80_10500	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
J4T80_10505	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
J4T80_10515	COG1210	Utp--glucose-1-phosphate uridylyltransferase
J4T80_10520	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
J4T80_10520	COG0475	glutathione-regulated potassium exporter activity
J4T80_10530	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
J4T80_10540	COG0518	GMP synthase (glutamine-hydrolyzing) activity
J4T80_10540	COG0519	Catalyzes the synthesis of GMP from XMP
J4T80_10550	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
J4T80_10555	COG0583	DNA-binding transcription factor activity
J4T80_10570	COG2197	response regulator
J4T80_10585	COG1335	isochorismatase
J4T80_10600	COG2814	Major facilitator Superfamily
J4T80_10615	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
J4T80_10615	COG1648	precorrin-2 dehydrogenase activity
J4T80_10630	COG3685	Protein conserved in bacteria
J4T80_10650	COG5001	Diguanylate cyclase
J4T80_10665	COG4566	intracellular signal transduction
J4T80_10700	COG3275	phosphorelay sensor kinase activity
J4T80_10705	COG3279	Response regulator of the LytR AlgR family
J4T80_10745	COG3920	Histidine kinase
J4T80_10770	COG3220	belongs to the UPF0276 family
J4T80_10780	COG3039	Transposase
J4T80_10795	COG3328	transposase activity
J4T80_10800	COG0604	alcohol dehydrogenase
J4T80_10800	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_10800	COG3321	synthase
J4T80_10805	COG0583	DNA-binding transcription factor activity
J4T80_10815	COG3039	Transposase
J4T80_10820	COG3328	transposase activity
J4T80_10860	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J4T80_10870	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J4T80_10870	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J4T80_10870	COG3321	synthase
J4T80_10870	COG3321	synthase
J4T80_10870	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_10870	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_10870	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J4T80_10870	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J4T80_10870	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J4T80_10870	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J4T80_10940	COG4221	oxidoreductase activity
J4T80_10940	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_10940	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J4T80_10940	COG3321	synthase
J4T80_10945	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
J4T80_10950	COG1136	(ABC) transporter
J4T80_11085	COG3328	transposase activity
J4T80_11170	COG3328	transposase activity
J4T80_11180	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
J4T80_11185	COG1073	alpha beta
J4T80_11185	COG2226	methyltransferase
J4T80_11230	COG0316	Belongs to the HesB IscA family
J4T80_11230	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
J4T80_11235	COG2154	pterin-4-alpha-carbinolamine dehydratase
J4T80_11245	COG0428	transporter
J4T80_11250	COG3064	Membrane
J4T80_11260	COG1530	ribonuclease E activity
J4T80_11270	COG1054	Belongs to the UPF0176 family
J4T80_11290	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
J4T80_11315	COG3328	transposase activity
J4T80_11330	COG3328	transposase activity
J4T80_11355	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
J4T80_11360	COG0322	excinuclease ABC activity
J4T80_11370	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
J4T80_11375	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
J4T80_11380	COG1663	tetraacyldisaccharide 4'-kinase activity
J4T80_11385	COG1132	(ABC) transporter
J4T80_11390	COG0848	biopolymer transport protein
J4T80_11395	COG0811	peptide transport
J4T80_11410	COG1136	(ABC) transporter
J4T80_11415	COG4591	ABC-type transport system involved in lipoprotein release permease component
J4T80_11425	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
J4T80_11430	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
J4T80_11445	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
J4T80_11460	COG0354	folic acid binding
J4T80_11470	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
J4T80_11475	COG0837	glucose binding
J4T80_11480	COG0363	glucosamine-6-phosphate deaminase activity
J4T80_11485	COG0129	dihydroxy-acid dehydratase activity
J4T80_11490	COG0800	Aldolase
J4T80_11555	COG0784	Response regulator, receiver
J4T80_11555	COG2205	protein histidine kinase activity
J4T80_11560	COG2183	response to ionizing radiation
J4T80_11570	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J4T80_11570	COG0723	plastoquinol--plastocyanin reductase activity
J4T80_11585	COG3243	poly(R)-hydroxyalkanoic acid synthase
J4T80_11595	COG1183	phosphatidylcholine synthase activity
J4T80_11600	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_11615	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
J4T80_11625	COG0668	transmembrane transport
J4T80_11630	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
J4T80_11645	COG1914	H( )-stimulated, divalent metal cation uptake system
J4T80_11675	COG0746	molybdenum cofactor guanylyltransferase activity
J4T80_11680	COG0303	'Molybdopterin
J4T80_11690	COG0708	Exodeoxyribonuclease III
J4T80_11725	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
J4T80_11730	COG0303	'Molybdopterin
J4T80_11735	COG1160	GTP binding
J4T80_11740	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J4T80_11750	COG1426	Protein conserved in bacteria
J4T80_11760	COG0820	rRNA (adenine-C2-)-methyltransferase activity
J4T80_11775	COG1250	3-hydroxyacyl-CoA dehydrogenase
J4T80_11775	COG1024	Enoyl-CoA hydratase
J4T80_11780	COG0183	Belongs to the thiolase family
J4T80_11785	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
J4T80_11790	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
J4T80_11800	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
J4T80_11810	COG1674	ftsk spoiiie
J4T80_11815	COG0492	ferredoxin-NADP+ reductase activity
J4T80_11825	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
J4T80_11835	COG0542	response to heat
J4T80_11850	COG0482	sulfurtransferase activity
J4T80_11855	COG2915	High frequency lysogenization protein hflD homolog
J4T80_11885	COG5002	protein histidine kinase activity
J4T80_11910	COG0835	chemotaxis
J4T80_11910	COG0784	Response regulator, receiver
J4T80_11920	COG1558	bacterial-type flagellum-dependent cell motility
J4T80_11925	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
J4T80_11935	COG4787	bacterial-type flagellum-dependent cell motility
J4T80_11945	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
J4T80_11950	COG1706	bacterial-type flagellum-dependent cell motility
J4T80_11955	COG1705	Flagellar rod assembly protein muramidase FlgJ
J4T80_11955	COG3951	Flagellar rod assembly protein muramidase FlgJ
J4T80_11965	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J4T80_11980	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
J4T80_12010	COG2201	protein-glutamate methylesterase activity
J4T80_12030	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J4T80_12035	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_12040	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_12070	COG3039	Transposase
J4T80_12085	COG1677	Flagellar hook-basal body complex protein FliE
J4T80_12135	COG3190	flagellar
J4T80_12155	COG1684	flagellar biosynthetic protein fliR
J4T80_12180	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
J4T80_12210	COG0643	Histidine kinase
J4T80_12210	COG0784	Response regulator, receiver
J4T80_12210	COG2198	Histidine kinase
J4T80_12220	COG3328	transposase activity
J4T80_12240	COG3039	Transposase
J4T80_12250	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
J4T80_12255	COG1360	Flagellar Motor Protein
J4T80_12265	COG0835	chemotaxis
J4T80_12275	COG0745	RESPONSE REGULATOR receiver
J4T80_12285	COG0840	transmembrane signaling receptor activity
J4T80_12305	COG0840	transmembrane signaling receptor activity
J4T80_12310	COG0840	transmembrane signaling receptor activity
J4T80_12315	COG0840	transmembrane signaling receptor activity
J4T80_12325	COG0840	transmembrane signaling receptor activity
J4T80_12330	COG0840	transmembrane signaling receptor activity
J4T80_12335	COG3328	transposase activity
J4T80_12340	COG0840	transmembrane signaling receptor activity
J4T80_12345	COG0840	transmembrane signaling receptor activity
J4T80_12365	COG0835	chemotaxis
J4T80_12380	COG0840	transmembrane signaling receptor activity
J4T80_12390	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
J4T80_12395	COG2201	protein-glutamate methylesterase activity
J4T80_12405	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J4T80_12430	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
J4T80_12440	COG0318	PFAM AMP-dependent synthetase and ligase
J4T80_12445	COG1024	Enoyl-CoA hydratase
J4T80_12450	COG2205	protein histidine kinase activity
J4T80_12450	COG2198	Histidine kinase
J4T80_12450	COG0784	Response regulator, receiver
J4T80_12455	COG2198	Histidine kinase
J4T80_12455	COG0784	Response regulator, receiver
J4T80_12455	COG2205	protein histidine kinase activity
J4T80_12465	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
J4T80_12475	COG3279	Response regulator of the LytR AlgR family
J4T80_12485	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
J4T80_12495	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J4T80_12500	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
J4T80_12510	COG0505	Belongs to the CarA family
J4T80_12515	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
J4T80_12520	COG2258	MOSC domain
J4T80_12525	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J4T80_12570	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
J4T80_12590	COG0277	FAD linked oxidase domain protein
J4T80_12595	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J4T80_12605	COG0531	amino acid
J4T80_12610	COG0531	amino acid
J4T80_12615	COG0235	Class ii aldolase
J4T80_12620	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
J4T80_12625	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
J4T80_12640	COG0140	phosphoribosyl-ATP diphosphatase activity
J4T80_12640	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
J4T80_12645	COG0107	imidazoleglycerol-phosphate synthase activity
J4T80_12650	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
J4T80_12655	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
J4T80_12660	COG0131	Imidazoleglycerol-phosphate dehydratase
J4T80_12660	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
J4T80_12665	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
J4T80_12670	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
J4T80_12675	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
J4T80_12685	COG0124	histidyl-tRNA synthetase
J4T80_12690	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J4T80_12730	COG3328	transposase activity
J4T80_12740	COG3039	Transposase
J4T80_12780	COG1649	PFAM Uncharacterised BCR, COG1649
J4T80_12780	COG0726	polysaccharide deacetylase
J4T80_12785	COG1215	transferase activity, transferring glycosyl groups
J4T80_12800	COG1012	belongs to the aldehyde dehydrogenase family
J4T80_12815	COG0167	dihydroorotate dehydrogenase activity
J4T80_12820	COG0812	UDP-N-acetylmuramate dehydrogenase activity
J4T80_12825	COG0697	spore germination
J4T80_12830	COG1794	racemase activity, acting on amino acids and derivatives
J4T80_12850	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
J4T80_12860	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
J4T80_12865	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
J4T80_12870	COG2203	Gaf domain
J4T80_12870	COG3706	GGDEF domain
J4T80_12870	COG4251	negative regulation of phosphorylation
J4T80_12870	COG5001	Diguanylate cyclase
J4T80_12880	COG1472	Belongs to the glycosyl hydrolase 3 family
J4T80_12905	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
J4T80_12910	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
J4T80_12915	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
J4T80_12935	COG1469	GTP cyclohydrolase I activity
J4T80_12940	COG3328	transposase activity
J4T80_12970	COG3039	Transposase
J4T80_13005	COG3702	type iv secretory pathway
J4T80_13025	COG2948	multi-organism process
J4T80_13045	COG3505	Type IV secretory pathway VirD4
J4T80_13060	COG0556	nucleotide-excision repair
J4T80_13065	COG4969	Belongs to the N-Me-Phe pilin family
J4T80_13105	COG1611	Belongs to the LOG family
J4T80_13115	COG2095	MarC family integral membrane protein
J4T80_13125	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
J4T80_13160	COG1185	polyribonucleotide nucleotidyltransferase activity
J4T80_13165	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
J4T80_13170	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
J4T80_13175	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
J4T80_13180	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
J4T80_13185	COG0195	Participates in both transcription termination and antitermination
J4T80_13190	COG0779	Required for maturation of 30S ribosomal subunits
J4T80_13200	COG1007	ATP synthesis coupled electron transport
J4T80_13225	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J4T80_13230	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
J4T80_13240	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
J4T80_13245	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
J4T80_13250	COG0649	NAD binding
J4T80_13255	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J4T80_13260	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J4T80_13265	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J4T80_13280	COG0149	triose-phosphate isomerase activity
J4T80_13285	COG0300	oxidoreductase activity
J4T80_13315	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J4T80_13320	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
J4T80_13325	COG0159	tryptophan synthase activity
J4T80_13335	COG0133	tryptophan synthase activity
J4T80_13345	COG0135	phosphoribosylanthranilate isomerase activity
J4T80_13350	COG0101	tRNA pseudouridine synthase activity
J4T80_13365	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
J4T80_13370	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
J4T80_13375	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
J4T80_13380	COG2890	protein-(glutamine-N5) methyltransferase activity
J4T80_13390	COG0688	phosphatidylethanolamine metabolic process
J4T80_13400	COG0433	COG0433 Predicted ATPase
J4T80_13405	COG0494	nUDIX hydrolase
J4T80_13420	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J4T80_13425	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
J4T80_13430	COG3039	Transposase
J4T80_13485	COG0717	Belongs to the dCTP deaminase family
J4T80_13490	COG0489	protein tyrosine kinase activity
J4T80_13510	COG3590	peptidase
J4T80_13515	COG3590	peptidase
J4T80_13535	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J4T80_13540	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J4T80_13545	COG2311	Membrane
J4T80_13550	COG1047	Peptidyl-prolyl cis-trans
J4T80_13555	COG0791	NLP P60 protein
J4T80_13560	COG0791	NLP P60 protein
J4T80_13570	COG4106	trans-aconitate 2-methyltransferase activity
J4T80_13575	COG1301	dicarboxylic acid transport
J4T80_13580	COG1785	Belongs to the alkaline phosphatase family
J4T80_13585	COG0037	tRNA processing
J4T80_13590	COG1722	exodeoxyribonuclease VII activity
J4T80_13595	COG0142	geranyltranstransferase activity
J4T80_13600	COG4104	PAAR repeat-containing protein
J4T80_13610	COG0312	modulator of DNA gyrase
J4T80_13615	COG3028	Belongs to the UPF0307 family
J4T80_13620	COG0312	modulator of DNA gyrase
J4T80_13630	COG3164	Protein of unknown function
J4T80_13640	COG0424	maF-like protein
J4T80_13645	COG2968	Membrane
J4T80_13660	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
J4T80_13675	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
J4T80_13690	COG0495	leucyl-tRNA aminoacylation
J4T80_13700	COG3118	belongs to the thioredoxin family
J4T80_13745	COG2155	Conserved Protein
J4T80_13790	COG1132	(ABC) transporter
J4T80_13815	COG1538	Outer membrane efflux protein
J4T80_13820	COG0745	RESPONSE REGULATOR receiver
J4T80_13825	COG5000	phosphorelay sensor kinase activity
J4T80_13825	COG5002	protein histidine kinase activity
J4T80_13830	COG0475	glutathione-regulated potassium exporter activity
J4T80_13840	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
J4T80_13860	COG1187	pseudouridine synthase activity
J4T80_13865	COG5001	Diguanylate cyclase
J4T80_13865	COG5002	protein histidine kinase activity
J4T80_13875	COG1595	DNA-templated transcription, initiation
J4T80_13975	COG0667	Aldo Keto reductase
J4T80_13980	COG2814	Major facilitator Superfamily
J4T80_13985	COG0583	DNA-binding transcription factor activity
J4T80_13995	COG2207	Transcriptional regulator
J4T80_14005	COG1309	transcriptional regulator
J4T80_14015	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J4T80_14030	COG0735	belongs to the Fur family
J4T80_14035	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J4T80_14065	COG3328	transposase activity
J4T80_14070	COG4452	Inner membrane protein CreD
J4T80_14080	COG2205	protein histidine kinase activity
J4T80_14085	COG0745	RESPONSE REGULATOR receiver
J4T80_14090	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
J4T80_14100	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
J4T80_14110	COG0643	Histidine kinase
J4T80_14110	COG2198	Histidine kinase
J4T80_14115	COG0840	transmembrane signaling receptor activity
J4T80_14120	COG0835	chemotaxis
J4T80_14125	COG2199	diguanylate cyclase activity
J4T80_14125	COG2200	EAL domain
J4T80_14125	COG2202	Pas domain
J4T80_14130	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
J4T80_14135	COG2201	protein-glutamate methylesterase activity
J4T80_14140	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J4T80_14145	COG3590	peptidase
J4T80_14155	COG0588	phosphoglycerate mutase activity
J4T80_14160	COG1515	deoxyribonuclease V activity
J4T80_14170	COG1741	Belongs to the pirin family
J4T80_14185	COG1741	Belongs to the pirin family
J4T80_14190	COG1966	Carbon starvation protein
J4T80_14195	COG2879	small protein
J4T80_14230	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
J4T80_14235	COG1529	Aldehyde oxidase and xanthine dehydrogenase
J4T80_14240	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
J4T80_14245	COG2080	2 iron, 2 sulfur cluster binding
J4T80_14250	COG3321	synthase
J4T80_14250	COG0604	alcohol dehydrogenase
J4T80_14250	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_14255	COG4251	negative regulation of phosphorylation
J4T80_14255	COG3706	GGDEF domain
J4T80_14255	COG5001	Diguanylate cyclase
J4T80_14255	COG2203	Gaf domain
J4T80_14260	COG0629	single-stranded DNA binding
J4T80_14265	COG0142	geranyltranstransferase activity
J4T80_14280	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
J4T80_14295	COG0527	aspartate kinase activity
J4T80_14300	COG0384	phenazine biosynthesis protein PhzF
J4T80_14305	COG0384	phenazine biosynthesis protein PhzF
J4T80_14315	COG1764	response to oxidative stress
J4T80_14320	COG0540	Belongs to the ATCase OTCase family
J4T80_14325	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
J4T80_14330	COG1678	Uncharacterized ACR, COG1678
J4T80_14335	COG0519	Catalyzes the synthesis of GMP from XMP
J4T80_14360	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
J4T80_14375	COG0739	heme binding
J4T80_14395	COG0693	protein deglycase activity
J4T80_14405	COG1959	2 iron, 2 sulfur cluster binding
J4T80_14410	COG0719	Fe-S assembly protein
J4T80_14415	COG0396	ATPase activity
J4T80_14420	COG0719	Fe-S assembly protein
J4T80_14425	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
J4T80_14435	COG2146	nitrite reductase [NAD(P)H] activity
J4T80_14440	COG4774	siderophore transport
J4T80_14445	COG3128	pkhd-type hydroxylase
J4T80_14470	COG1477	protein flavinylation
J4T80_14475	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
J4T80_14485	COG1555	photosystem II stabilization
J4T80_14500	COG3178	'Phosphotransferase
J4T80_14505	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
J4T80_14515	COG0628	permease
J4T80_14525	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
J4T80_14535	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
J4T80_14555	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
J4T80_14560	COG0271	Belongs to the BolA IbaG family
J4T80_14570	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
J4T80_14580	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
J4T80_14585	COG1137	ATPase activity
J4T80_14600	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4T80_14605	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
J4T80_14610	COG1660	Displays ATPase and GTPase activities
J4T80_14620	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
J4T80_14625	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
J4T80_14630	COG2239	Acts as a magnesium transporter
J4T80_14640	COG1294	oxidase, subunit
J4T80_14645	COG1271	oxidase subunit
J4T80_14655	COG1113	amino acid transport
J4T80_14665	COG3328	transposase activity
J4T80_14680	COG2197	response regulator
J4T80_14685	COG0531	amino acid
J4T80_14710	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
J4T80_14715	COG4691	Plasmid stability protein
J4T80_14735	COG3328	transposase activity
J4T80_14745	COG2951	lytic endotransglycosylase activity
J4T80_14810	COG2814	Major facilitator Superfamily
J4T80_14820	COG0754	glutathionylspermidine amidase activity
J4T80_14845	COG1842	Phage shock protein A
J4T80_14855	COG0259	pyridoxamine-phosphate oxidase activity
J4T80_14860	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
J4T80_14865	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
J4T80_14875	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
J4T80_14880	COG2814	Major facilitator Superfamily
J4T80_14900	COG2205	protein histidine kinase activity
J4T80_14900	COG2198	Histidine kinase
J4T80_14900	COG0784	Response regulator, receiver
J4T80_14905	COG2353	YceI-like domain
J4T80_14925	COG1760	l-serine dehydratase
J4T80_14935	COG0460	homoserine dehydrogenase
J4T80_14935	COG0527	aspartate kinase activity
J4T80_14940	COG0626	cystathionine gamma-synthase activity
J4T80_14945	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
J4T80_14950	COG0739	heme binding
J4T80_14955	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
J4T80_14960	COG1272	protein, Hemolysin III
J4T80_14965	COG2982	Protein involved in outer membrane biogenesis
J4T80_14970	COG0516	GMP reductase activity
J4T80_14970	COG0517	IMP dehydrogenase activity
J4T80_14975	COG0463	Glycosyl transferase, family 2
J4T80_14980	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J4T80_14985	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
J4T80_14995	COG4771	TonB-dependent receptor
J4T80_15010	COG3328	transposase activity
J4T80_15020	COG3039	Transposase
J4T80_15025	COG1309	transcriptional regulator
J4T80_15035	COG1960	acyl-CoA dehydrogenase activity
J4T80_15060	COG3328	transposase activity
J4T80_15080	COG0509	glycine decarboxylation via glycine cleavage system
J4T80_15085	COG0404	The glycine cleavage system catalyzes the degradation of glycine
J4T80_15105	COG1742	UPF0060 membrane protein
J4T80_15110	COG3956	TIGRFAM MazG family protein
J4T80_15115	COG1218	3'(2'),5'-bisphosphate nucleotidase
J4T80_15120	COG0494	nUDIX hydrolase
J4T80_15130	COG1385	rRNA (uridine-N3-)-methyltransferase activity
J4T80_15135	COG0837	glucose binding
J4T80_15150	COG1388	LysM domain
J4T80_15150	COG3858	chitin binding
J4T80_15155	COG3525	Glycosyl hydrolase, family 20, catalytic domain
J4T80_15165	COG1472	Belongs to the glycosyl hydrolase 3 family
J4T80_15185	COG0531	amino acid
J4T80_15195	COG1486	melibiose metabolic process
J4T80_15205	COG3537	Alpha-1,2-mannosidase
J4T80_15240	COG3142	Participates in the control of copper homeostasis
J4T80_15245	COG1446	asparaginase
J4T80_15265	COG0784	Response regulator, receiver
J4T80_15265	COG2198	Histidine kinase
J4T80_15265	COG0643	Histidine kinase
J4T80_15270	COG0840	transmembrane signaling receptor activity
J4T80_15275	COG0835	chemotaxis
J4T80_15290	COG0189	ligase activity
J4T80_15300	COG1397	ADP-ribosylglycohydrolase
J4T80_15310	COG1199	ATP-dependent helicase activity
J4T80_15320	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J4T80_15325	COG1215	transferase activity, transferring glycosyl groups
J4T80_15335	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
J4T80_15345	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
J4T80_15350	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
J4T80_15355	COG0535	radical SAM domain protein
J4T80_15360	COG0535	radical SAM domain protein
J4T80_15375	COG0837	glucose binding
J4T80_15385	COG1643	Atp-dependent helicase
J4T80_15390	COG0783	Belongs to the Dps family
J4T80_15395	COG0514	ATP-dependent DNA helicase (RecQ)
J4T80_15440	COG0840	transmembrane signaling receptor activity
J4T80_15460	COG3920	Histidine kinase
J4T80_15465	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
J4T80_15475	COG0602	queuosine metabolic process
J4T80_15485	COG2885	chlorophyll binding
J4T80_15490	COG0823	Involved in the tonB-independent uptake of proteins
J4T80_15500	COG0848	biopolymer transport protein
J4T80_15510	COG0824	Thioesterase
J4T80_15515	COG2255	four-way junction helicase activity
J4T80_15520	COG3158	transport of potassium into the cell
J4T80_15525	COG0632	four-way junction helicase activity
J4T80_15530	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
J4T80_15535	COG0217	transcriptional regulatory protein
J4T80_15550	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
J4T80_15565	COG0477	Major facilitator Superfamily
J4T80_15605	COG0488	(ABC) transporter
J4T80_15635	COG4651	solute:proton antiporter activity
J4T80_15635	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
J4T80_15645	COG4772	TonB-dependent receptor
J4T80_15655	COG4264	IucA IucC family
J4T80_15670	COG0019	diaminopimelate decarboxylase activity
J4T80_15695	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
J4T80_15705	COG1492	cobalamin metabolic process
J4T80_15715	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
J4T80_15740	COG4206	TonB-dependent receptor
J4T80_15745	COG0542	response to heat
J4T80_15750	COG1116	anion transmembrane transporter activity
J4T80_15755	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
J4T80_15760	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
J4T80_15765	COG0667	Aldo Keto reductase
J4T80_15770	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J4T80_15775	COG4771	TonB-dependent receptor
J4T80_15780	COG2827	Endonuclease containing a URI domain
J4T80_15820	COG1877	trehalose-phosphatase activity
J4T80_15825	COG3387	PFAM Glycoside hydrolase 15-related
J4T80_15840	COG0840	transmembrane signaling receptor activity
J4T80_15845	COG3011	Protein conserved in bacteria
J4T80_15860	COG0564	pseudouridine synthase activity
J4T80_15865	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J4T80_15875	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
J4T80_15875	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
J4T80_15885	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
J4T80_15890	COG0045	succinate-CoA ligase (ADP-forming) activity
J4T80_15915	COG3039	Transposase
J4T80_15925	COG1459	type II secretion system
J4T80_15930	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
J4T80_15935	COG0237	dephospho-CoA kinase activity
J4T80_15945	COG3328	transposase activity
J4T80_15970	COG0745	RESPONSE REGULATOR receiver
J4T80_15980	COG0189	ligase activity
J4T80_16005	COG3328	transposase activity
J4T80_16030	COG3039	Transposase
J4T80_16050	COG3328	transposase activity
J4T80_16070	COG3039	Transposase
J4T80_16080	COG3328	transposase activity
J4T80_16085	COG3039	Transposase
J4T80_16095	COG3328	transposase activity
J4T80_16170	COG2022	thiamine diphosphate biosynthetic process
J4T80_16175	COG0220	tRNA (guanine-N7-)-methyltransferase activity
J4T80_16180	COG0471	metal ion transport
J4T80_16180	COG3273	potassium ion transport
J4T80_16200	COG1970	mechanosensitive ion channel activity
J4T80_16210	COG1609	Transcriptional regulator
J4T80_16220	COG3250	beta-galactosidase activity
J4T80_16225	COG4948	Mandelate Racemase Muconate Lactonizing
J4T80_16235	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J4T80_16245	COG0308	aminopeptidase N
J4T80_16250	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J4T80_16260	COG2895	sulfate adenylyltransferase (ATP) activity
J4T80_16260	COG0529	Catalyzes the synthesis of activated sulfate
J4T80_16265	COG0175	sulfate reduction
J4T80_16270	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
J4T80_16275	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
J4T80_16280	COG0175	sulfate reduction
J4T80_16305	COG2205	protein histidine kinase activity
J4T80_16305	COG2198	Histidine kinase
J4T80_16305	COG0784	Response regulator, receiver
J4T80_16320	COG1648	precorrin-2 dehydrogenase activity
J4T80_16320	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
J4T80_16335	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
J4T80_16340	COG3588	fructose-bisphosphate aldolase
J4T80_16345	COG0469	pyruvate kinase activity
J4T80_16355	COG0126	phosphoglycerate kinase activity
J4T80_16375	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
J4T80_16385	COG3047	cAMP biosynthetic process
J4T80_16390	COG3047	cAMP biosynthetic process
J4T80_16400	COG3453	Protein conserved in bacteria
J4T80_16400	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J4T80_16405	COG0725	ABC transporter, periplasmic molybdate-binding protein
J4T80_16410	COG4149	molybdate abc transporter
J4T80_16415	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
J4T80_16450	COG1376	ErfK ybiS ycfS ynhG family protein
J4T80_16455	COG0739	heme binding
J4T80_16460	COG4773	Receptor
J4T80_16470	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
J4T80_16475	COG1301	dicarboxylic acid transport
J4T80_16485	COG2304	oxidoreductase activity
J4T80_16505	COG0714	Associated with various cellular activities
J4T80_16535	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
J4T80_16560	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
J4T80_16570	COG2721	sulfolactate sulfo-lyase activity
J4T80_16585	COG2271	Major facilitator Superfamily
J4T80_16600	COG0583	DNA-binding transcription factor activity
J4T80_16605	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
J4T80_16620	COG1561	YicC-like family, N-terminal region
J4T80_16625	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
J4T80_16635	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
J4T80_16640	COG0635	Involved in the biosynthesis of porphyrin-containing compound
J4T80_16655	COG0006	proline dipeptidase activity
J4T80_16665	COG0006	proline dipeptidase activity
J4T80_16670	COG3079	Belongs to the UPF0149 family
J4T80_16690	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
J4T80_16700	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
J4T80_16710	COG2912	Transglutaminase-like superfamily
J4T80_16715	COG1773	rubredoxin
J4T80_16720	COG0352	thiamine-phosphate diphosphorylase activity
J4T80_16735	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
J4T80_16750	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
J4T80_16780	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J4T80_16785	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J4T80_16790	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_16800	COG0671	phosphoesterase, PA-phosphatase related
J4T80_16805	COG3781	membrane
J4T80_16815	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
J4T80_16820	COG0563	adenylate kinase activity
J4T80_16835	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
J4T80_16845	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
J4T80_16870	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
J4T80_16880	COG0840	transmembrane signaling receptor activity
J4T80_16885	COG0405	Gamma-glutamyltransferase
J4T80_16890	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
J4T80_16910	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
J4T80_16915	COG0473	3-isopropylmalate dehydrogenase activity
J4T80_16920	COG0066	3-isopropylmalate dehydratase activity
J4T80_16925	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
J4T80_16945	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
J4T80_16950	COG1538	Outer membrane efflux protein
J4T80_16955	COG1519	Transferase
J4T80_16960	COG1560	Kdo2-lipid A biosynthetic process
J4T80_16985	COG0280	phosphate acetyltransferase
J4T80_16985	COG0281	malic enzyme
J4T80_16990	COG1301	dicarboxylic acid transport
J4T80_17000	COG4191	Histidine kinase
J4T80_17015	COG0583	DNA-binding transcription factor activity
J4T80_17020	COG0667	Aldo Keto reductase
J4T80_17035	COG2197	response regulator
J4T80_17045	COG0642	Histidine kinase
J4T80_17060	COG2851	Citrate transporter
J4T80_17065	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_17070	COG1609	Transcriptional regulator
J4T80_17075	COG2211	Major facilitator Superfamily
J4T80_17105	COG1162	GTPase activity
J4T80_17110	COG0436	Aminotransferase
J4T80_17125	COG0726	polysaccharide deacetylase
J4T80_17130	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
J4T80_17145	COG3964	amidohydrolase
J4T80_17150	COG0402	S-adenosylhomocysteine deaminase activity
J4T80_17170	COG3039	Transposase
J4T80_17175	COG1307	EDD domain protein, DegV family
J4T80_17180	COG0242	peptide deformylase activity
J4T80_17200	COG0457	Tetratricopeptide repeat
J4T80_17205	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
J4T80_17210	COG1215	transferase activity, transferring glycosyl groups
J4T80_17215	COG1215	transferase activity, transferring glycosyl groups
J4T80_17230	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
J4T80_17275	COG2188	Transcriptional regulator
J4T80_17285	COG1450	Type ii and iii secretion system protein
J4T80_17300	COG3166	PFAM Fimbrial assembly family protein
J4T80_17305	COG3156	type II secretion system protein K
J4T80_17310	COG4795	General secretion pathway protein
J4T80_17315	COG2165	general secretion pathway protein
J4T80_17320	COG4970	Tfp pilus assembly protein FimT
J4T80_17325	COG2165	general secretion pathway protein
J4T80_17330	COG1459	type II secretion system
J4T80_17335	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J4T80_17345	COG5295	Hep Hag repeat protein
J4T80_17350	COG1404	Belongs to the peptidase S8 family
J4T80_17355	COG5295	Hep Hag repeat protein
J4T80_17360	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
J4T80_17360	COG0047	phosphoribosylformylglycinamidine synthase activity
J4T80_17365	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
J4T80_17370	COG4974	Belongs to the 'phage' integrase family
J4T80_17385	COG0795	lipopolysaccharide-transporting ATPase activity
J4T80_17395	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
J4T80_17410	COG0525	valine-tRNA ligase activity
J4T80_17445	COG1183	phosphatidylcholine synthase activity
J4T80_17455	COG0442	prolyl-tRNA aminoacylation
J4T80_17470	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
J4T80_17475	COG1127	ABC transporter
J4T80_17480	COG3218	ABC-type transport auxiliary lipoprotein component
J4T80_17480	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
J4T80_17510	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J4T80_17515	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
J4T80_17515	COG0662	Cupin 2, conserved barrel domain protein
J4T80_17545	COG2086	electron transfer activity
J4T80_17560	COG0463	Glycosyl transferase, family 2
J4T80_17595	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
J4T80_17600	COG0438	transferase activity, transferring glycosyl groups
J4T80_17620	COG0438	transferase activity, transferring glycosyl groups
J4T80_17625	COG0626	cystathionine gamma-synthase activity
J4T80_17655	COG0625	glutathione transferase activity
J4T80_17665	COG0513	Belongs to the DEAD box helicase family
J4T80_17675	COG4771	TonB-dependent receptor
J4T80_17680	COG0720	synthase
J4T80_17705	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
J4T80_17710	COG1956	GAF domain-containing protein
J4T80_17720	COG2819	hydrolase of the alpha beta superfamily
J4T80_17730	COG0546	phosphoglycolate phosphatase activity
J4T80_17735	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
J4T80_17740	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
J4T80_17755	COG0339	signal peptide processing
J4T80_17805	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
J4T80_17810	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4T80_17815	COG1136	(ABC) transporter
J4T80_17820	COG0577	efflux transmembrane transporter activity
J4T80_17825	COG0577	efflux transmembrane transporter activity
J4T80_17825	COG1136	(ABC) transporter
J4T80_17840	COG4191	Histidine kinase
J4T80_17845	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
J4T80_17860	COG0355	proton-transporting ATP synthase activity, rotational mechanism
J4T80_17865	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
J4T80_17870	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
J4T80_17875	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
J4T80_17880	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
J4T80_17885	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
J4T80_17895	COG0356	it plays a direct role in the translocation of protons across the membrane
J4T80_17915	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J4T80_17925	COG0508	dehydrogenase complex catalyzes the overall conversion of
J4T80_17960	COG2011	ABC-type metal ion transport system permease component
J4T80_17965	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
J4T80_17970	COG0697	spore germination
J4T80_17975	COG1666	GTP binding
J4T80_17985	COG5002	protein histidine kinase activity
J4T80_17985	COG0784	Response regulator, receiver
J4T80_17985	COG2198	Histidine kinase
J4T80_18010	COG1187	pseudouridine synthase activity
J4T80_18015	COG2813	Specifically methylates the guanine in position
J4T80_18035	COG2202	Pas domain
J4T80_18035	COG2205	protein histidine kinase activity
J4T80_18055	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
J4T80_18060	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J4T80_18115	COG0842	Transport permease protein
J4T80_18120	COG1131	(ABC) transporter
J4T80_18125	COG0025	NhaP-type Na H and K H
J4T80_18130	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
J4T80_18135	COG1573	uracil-dna glycosylase
J4T80_18145	COG3384	dioxygenase
J4T80_18155	COG0583	DNA-binding transcription factor activity
J4T80_18165	COG0667	Aldo Keto reductase
J4T80_18175	COG3590	peptidase
J4T80_18190	COG0531	amino acid
J4T80_18205	COG2972	Histidine kinase
J4T80_18220	COG3685	Protein conserved in bacteria
J4T80_18225	COG3546	catalase activity
J4T80_18260	COG2204	response regulator
J4T80_18270	COG1271	oxidase subunit
J4T80_18275	COG1294	oxidase, subunit
J4T80_18290	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_18295	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
J4T80_18315	COG3039	Transposase
J4T80_18325	COG1132	(ABC) transporter
J4T80_18340	COG1063	alcohol dehydrogenase
J4T80_18415	COG0251	oxidation-reduction process
J4T80_18445	COG0583	DNA-binding transcription factor activity
J4T80_18450	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
J4T80_18475	COG3039	Transposase
J4T80_18495	COG0659	secondary active sulfate transmembrane transporter activity
J4T80_18505	COG0024	Methionine aminopeptidase
J4T80_18555	COG3328	transposase activity
J4T80_18575	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J4T80_18580	COG1490	D-aminoacyl-tRNA deacylase activity
J4T80_18585	COG1560	Kdo2-lipid A biosynthetic process
J4T80_18635	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
J4T80_18635	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
J4T80_18640	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
J4T80_18645	COG0242	peptide deformylase activity
J4T80_18650	COG1652	LysM domain
J4T80_18655	COG0758	DNA mediated transformation
J4T80_18675	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
J4T80_18675	COG1754	DNA topoisomerase type I activity
J4T80_18680	COG0009	L-threonylcarbamoyladenylate synthase
J4T80_18695	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_18705	COG0616	signal peptide processing
J4T80_18710	COG0534	Mate efflux family protein
J4T80_18730	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
J4T80_18735	COG0625	glutathione transferase activity
J4T80_18750	COG1252	NADH dehydrogenase
J4T80_18760	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J4T80_18765	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
J4T80_18770	COG2201	protein-glutamate methylesterase activity
J4T80_18775	COG2177	Part of the ABC transporter FtsEX involved in
J4T80_18780	COG2884	Cell division ATP-binding protein ftsE
J4T80_18785	COG0513	Belongs to the DEAD box helicase family
J4T80_18790	COG3118	belongs to the thioredoxin family
J4T80_18795	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
J4T80_18800	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
J4T80_18805	COG0583	DNA-binding transcription factor activity
J4T80_18825	COG1652	LysM domain
J4T80_18830	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
J4T80_18830	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
J4T80_18835	COG1473	amidohydrolase
J4T80_18840	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4T80_18845	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J4T80_18865	COG5383	Protein conserved in bacteria
J4T80_18890	COG3039	Transposase
J4T80_18910	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
J4T80_18915	COG3023	N-Acetylmuramoyl-L-alanine amidase
J4T80_18925	COG4948	Mandelate Racemase Muconate Lactonizing
J4T80_18935	COG0531	amino acid
J4T80_18955	COG2133	pyrroloquinoline quinone binding
J4T80_18965	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
J4T80_18970	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
J4T80_18980	COG1610	YqeY-like protein
J4T80_18985	COG1295	ribonuclease BN
J4T80_18990	COG0358	DNA primase activity
J4T80_19005	COG0109	protoheme IX farnesyltransferase activity
J4T80_19035	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
J4T80_19050	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
J4T80_19090	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
J4T80_19095	COG0739	heme binding
J4T80_19100	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
J4T80_19110	COG2223	nitrite transmembrane transporter activity
J4T80_19115	COG0708	Exodeoxyribonuclease III
J4T80_19120	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
J4T80_19130	COG1192	Involved in chromosome partitioning
J4T80_19135	COG1475	DNA binding
J4T80_19150	COG0463	Glycosyl transferase, family 2
J4T80_19165	COG0756	dUTP diphosphatase activity
J4T80_19170	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
J4T80_19175	COG2003	Belongs to the UPF0758 family
J4T80_19180	COG0018	arginyl-trna synthetase
J4T80_19195	COG4221	oxidoreductase activity
J4T80_19200	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
J4T80_19200	COG2755	lipolytic protein G-D-S-L family
J4T80_19215	COG1166	arginine decarboxylase activity
J4T80_19220	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
J4T80_19240	COG3291	Pkd domain containing protein
J4T80_19240	COG3525	Glycosyl hydrolase, family 20, catalytic domain
J4T80_19255	COG0606	chelatase, subunit chli
J4T80_19270	COG4943	cyclic-guanylate-specific phosphodiesterase activity
J4T80_19295	COG1690	Belongs to the RtcB family
J4T80_19330	COG1090	epimerase
J4T80_19340	COG0642	Histidine kinase
J4T80_19360	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J4T80_19385	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J4T80_19390	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
J4T80_19395	COG3328	transposase activity
J4T80_19405	COG0753	catalase activity
J4T80_19420	COG2197	response regulator
J4T80_19425	COG4585	Histidine kinase
J4T80_19430	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4T80_19435	COG1136	(ABC) transporter
J4T80_19460	COG0697	spore germination
J4T80_19480	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J4T80_19485	COG0180	Tryptophanyl-tRNA synthetase
J4T80_19490	COG3237	CsbD-like
J4T80_19530	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
J4T80_19550	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
J4T80_19595	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J4T80_19620	COG1199	ATP-dependent helicase activity
J4T80_19635	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
J4T80_19700	COG3328	transposase activity
J4T80_19710	COG0625	glutathione transferase activity
J4T80_19745	COG4555	ABC transporter
J4T80_19755	COG1476	TRANSCRIPTIONal
J4T80_19775	COG1230	cation diffusion facilitator family transporter
J4T80_19785	COG4774	siderophore transport
J4T80_19800	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
J4T80_19805	COG1131	(ABC) transporter
J4T80_19810	COG0842	Transport permease protein
J4T80_19815	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
J4T80_19845	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J4T80_19850	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J4T80_19860	COG0045	succinate-CoA ligase (ADP-forming) activity
J4T80_19860	COG1042	CoA-binding domain protein
J4T80_19860	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J4T80_19865	COG2239	Acts as a magnesium transporter
J4T80_19880	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
J4T80_19885	COG3387	PFAM Glycoside hydrolase 15-related
J4T80_19900	COG3100	YcgL domain-containing protein
J4T80_19905	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
J4T80_19915	COG0463	Glycosyl transferase, family 2
J4T80_19925	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_19960	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
J4T80_19975	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J4T80_20000	COG1506	peptidase
J4T80_20000	COG4946	Tricorn protease homolog
J4T80_20000	COG0823	Involved in the tonB-independent uptake of proteins
J4T80_20020	COG0408	coproporphyrinogen oxidase activity
J4T80_20130	COG1595	DNA-templated transcription, initiation
J4T80_20240	COG0210	DNA helicase
J4T80_20250	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J4T80_20255	COG0583	DNA-binding transcription factor activity
J4T80_20260	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
J4T80_20290	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J4T80_20310	COG0357	Ribosomal RNA small subunit methyltransferase G
J4T80_20315	COG3540	Alkaline phosphatase
J4T80_20325	COG2091	lysine biosynthetic process via aminoadipic acid
J4T80_20340	COG0708	Exodeoxyribonuclease III
J4T80_20345	COG1846	Transcriptional regulator
J4T80_20345	COG1940	carbohydrate kinase activity
J4T80_20365	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J4T80_20370	COG3162	membrane
J4T80_20380	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
J4T80_20425	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_20430	COG0179	Fumarylacetoacetate (FAA) hydrolase
J4T80_20435	COG4948	Mandelate Racemase Muconate Lactonizing
J4T80_20440	COG3254	rhamnose metabolic process
J4T80_20445	COG0738	Major facilitator superfamily
J4T80_20450	COG1414	Transcriptional regulator
J4T80_20455	COG1971	Probably functions as a manganese efflux pump
J4T80_20460	COG2205	protein histidine kinase activity
J4T80_20470	COG3459	Glycosyltransferase 36 associated
J4T80_20475	COG2211	Major facilitator Superfamily
J4T80_20480	COG3265	gluconokinase activity
J4T80_20485	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J4T80_20510	COG2911	Protein conserved in bacteria
J4T80_20515	COG0729	surface antigen
J4T80_20525	COG3039	Transposase
J4T80_20540	COG3328	transposase activity
J4T80_20580	COG0752	glycyl-tRNA synthetase alpha subunit
J4T80_20585	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J4T80_20605	COG0518	GMP synthase (glutamine-hydrolyzing) activity
J4T80_20605	COG0519	Catalyzes the synthesis of GMP from XMP
J4T80_20615	COG0805	protein transport
J4T80_20620	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
J4T80_20625	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
J4T80_20635	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
J4T80_20655	COG2974	May be involved in recombination
J4T80_20660	COG0037	tRNA processing
J4T80_20665	COG2115	Belongs to the xylose isomerase family
J4T80_20675	COG3661	Belongs to the glycosyl hydrolase 67 family
J4T80_20685	COG4948	Mandelate Racemase Muconate Lactonizing
J4T80_20695	COG1472	Belongs to the glycosyl hydrolase 3 family
J4T80_20700	COG0246	Mannitol dehydrogenase
J4T80_20770	COG3386	PFAM SMP-30 Gluconolaconase
J4T80_20780	COG3250	beta-galactosidase activity
J4T80_20785	COG1904	glucuronate isomerase
J4T80_20805	COG3693	PFAM glycoside hydrolase, family 10
J4T80_20820	COG2211	Major facilitator Superfamily
J4T80_20840	COG3039	Transposase
J4T80_20860	COG3321	synthase
J4T80_20860	COG0604	alcohol dehydrogenase
J4T80_20860	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_20865	COG2937	Belongs to the GPAT DAPAT family
J4T80_20895	COG0284	orotidine-5'-phosphate decarboxylase activity
J4T80_20900	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
J4T80_20905	COG3132	Protein of unknown function, DUF480
J4T80_20930	COG0210	DNA helicase
J4T80_20935	COG1435	thymidine kinase activity
J4T80_20945	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
J4T80_20955	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
J4T80_20985	COG3135	benzoate transporter
J4T80_21005	COG0676	glucose-6-phosphate 1-epimerase activity
J4T80_21015	COG3012	SEC-C Motif Domain Protein
J4T80_21020	COG0730	response to heat
J4T80_21040	COG0302	gtp cyclohydrolase
J4T80_21055	COG1566	PFAM secretion protein HlyD family protein
J4T80_21065	COG1289	transmembrane transporter activity
J4T80_21070	COG0477	Major facilitator Superfamily
J4T80_21080	COG0583	DNA-binding transcription factor activity
J4T80_21085	COG4221	oxidoreductase activity
J4T80_21095	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J4T80_21120	COG3328	transposase activity
J4T80_21145	COG1028	Short-chain dehydrogenase reductase Sdr
J4T80_21170	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
J4T80_21175	COG1074	ATP-dependent DNA helicase activity
J4T80_21180	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
J4T80_21215	COG1127	ABC transporter
J4T80_21220	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
J4T80_21225	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
J4T80_21240	COG2853	Lipoprotein
J4T80_21250	COG0386	Belongs to the glutathione peroxidase family
J4T80_21275	COG0625	glutathione transferase activity
J4T80_21290	COG3537	Alpha-1,2-mannosidase
J4T80_21310	COG1929	Belongs to the glycerate kinase type-1 family
J4T80_21315	COG2271	Major facilitator Superfamily
J4T80_21330	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
J4T80_21335	COG0861	Integral membrane protein TerC family
J4T80_21345	COG0584	glycerophosphoryl diester phosphodiesterase
J4T80_21360	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
J4T80_21370	COG0706	membrane insertase activity
J4T80_21375	COG0594	ribonuclease P activity
J4T80_21520	COG3328	transposase activity